Query 000177
Match_columns 1922
No_of_seqs 781 out of 4299
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 22:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 6.5E-31 2.2E-35 317.1 36.2 267 1502-1810 102-409 (410)
2 1got_B GT-beta; complex (GTP-b 100.0 2.3E-29 7.9E-34 295.0 37.9 271 1498-1809 45-340 (340)
3 3ow8_A WD repeat-containing pr 100.0 2.9E-29 1E-33 293.4 38.6 270 1501-1810 25-319 (321)
4 2ynn_A Coatomer subunit beta'; 100.0 3.4E-29 1.2E-33 289.1 37.7 273 1498-1811 3-301 (304)
5 2pbi_B Guanine nucleotide-bind 100.0 1.5E-28 5.3E-33 290.8 38.8 271 1499-1809 55-354 (354)
6 3frx_A Guanine nucleotide-bind 100.0 8.2E-29 2.8E-33 288.2 35.8 270 1498-1811 7-316 (319)
7 3iz6_a 40S ribosomal protein R 100.0 8.4E-29 2.9E-33 295.0 34.7 284 1496-1814 54-377 (380)
8 4ery_A WD repeat-containing pr 100.0 8.1E-28 2.8E-32 275.9 40.2 277 1496-1810 11-310 (312)
9 2xzm_R RACK1; ribosome, transl 100.0 3E-27 1E-31 277.0 36.9 274 1498-1811 11-339 (343)
10 4aow_A Guanine nucleotide-bind 100.0 1.2E-26 3.9E-31 265.8 39.2 277 1495-1811 25-336 (340)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.6E-27 5.3E-32 280.5 32.6 281 1497-1814 4-337 (345)
12 3ow8_A WD repeat-containing pr 100.0 1.9E-27 6.6E-32 278.1 33.2 240 1481-1735 53-310 (321)
13 4g56_B MGC81050 protein; prote 100.0 9.7E-28 3.3E-32 284.6 30.9 271 1503-1813 37-344 (357)
14 1vyh_C Platelet-activating fac 100.0 1.4E-27 4.8E-32 288.1 31.4 230 1492-1736 134-401 (410)
15 3zwl_B Eukaryotic translation 100.0 3.5E-26 1.2E-30 263.1 39.3 297 1498-1813 22-347 (369)
16 3dm0_A Maltose-binding peripla 100.0 7.8E-27 2.7E-31 299.3 36.5 274 1499-1812 373-693 (694)
17 1erj_A Transcriptional repress 100.0 1.5E-26 5.3E-31 276.8 36.3 266 1506-1813 62-390 (393)
18 1nr0_A Actin interacting prote 100.0 1.9E-26 6.5E-31 292.4 38.7 285 1494-1812 133-567 (611)
19 4gqb_B Methylosome protein 50; 100.0 1E-26 3.5E-31 276.0 31.8 265 1506-1812 28-331 (344)
20 2ynn_A Coatomer subunit beta'; 100.0 1.7E-26 5.9E-31 266.5 32.3 229 1492-1734 39-291 (304)
21 1nr0_A Actin interacting prote 100.0 1.3E-25 4.6E-30 284.6 41.5 274 1495-1813 46-398 (611)
22 2hes_X YDR267CP; beta-propelle 100.0 7.6E-26 2.6E-30 264.5 35.2 274 1497-1811 3-327 (330)
23 1got_B GT-beta; complex (GTP-b 99.9 7.8E-26 2.7E-30 265.1 32.8 229 1493-1736 82-333 (340)
24 1gxr_A ESG1, transducin-like e 99.9 6.2E-25 2.1E-29 250.0 37.6 265 1505-1810 48-335 (337)
25 3frx_A Guanine nucleotide-bind 99.9 1.4E-25 4.9E-30 260.9 32.9 224 1498-1737 55-308 (319)
26 1sq9_A Antiviral protein SKI8; 99.9 3.5E-25 1.2E-29 260.0 36.5 277 1499-1811 7-394 (397)
27 2ymu_A WD-40 repeat protein; u 99.9 5E-25 1.7E-29 272.6 39.7 267 1497-1809 292-577 (577)
28 4gqb_B Methylosome protein 50; 99.9 6.1E-26 2.1E-30 269.4 28.0 214 1506-1734 80-319 (344)
29 4e54_B DNA damage-binding prot 99.9 1.2E-25 4.2E-30 272.2 29.9 281 1501-1812 112-430 (435)
30 3ei3_B DNA damage-binding prot 99.9 7.4E-25 2.5E-29 258.0 35.2 281 1496-1811 61-381 (383)
31 3dw8_B Serine/threonine-protei 99.9 3.2E-25 1.1E-29 264.5 31.9 278 1507-1794 27-435 (447)
32 1r5m_A SIR4-interacting protei 99.9 1.3E-24 4.4E-29 255.0 36.1 279 1507-1810 107-423 (425)
33 3mkq_A Coatomer beta'-subunit; 99.9 1E-24 3.5E-29 281.1 36.4 258 1498-1789 3-284 (814)
34 1erj_A Transcriptional repress 99.9 9.5E-25 3.2E-29 261.3 33.4 219 1510-1735 124-378 (393)
35 1k8k_C P40, ARP2/3 complex 41 99.9 6.2E-25 2.1E-29 254.7 30.0 216 1504-1733 4-262 (372)
36 4ery_A WD repeat-containing pr 99.9 1.9E-24 6.4E-29 248.0 33.2 226 1495-1734 52-298 (312)
37 3odt_A Protein DOA1; ubiquitin 99.9 6E-24 2E-28 240.0 36.8 272 1496-1815 6-299 (313)
38 2pm9_A Protein WEB1, protein t 99.9 3.7E-25 1.3E-29 261.0 28.1 294 1500-1811 60-413 (416)
39 2pm7_B Protein transport prote 99.9 1.3E-24 4.5E-29 250.0 31.4 223 1501-1736 2-275 (297)
40 2pbi_B Guanine nucleotide-bind 99.9 1.6E-24 5.6E-29 256.4 32.9 227 1495-1736 93-347 (354)
41 2ymu_A WD-40 repeat protein; u 99.9 9.1E-24 3.1E-28 261.4 41.0 268 1497-1810 251-537 (577)
42 1r5m_A SIR4-interacting protei 99.9 3.1E-24 1.1E-28 251.7 33.9 273 1505-1812 42-361 (425)
43 3k26_A Polycomb protein EED; W 99.9 1.7E-24 5.9E-29 249.2 29.9 269 1504-1811 14-365 (366)
44 3v7d_B Cell division control p 99.9 9.4E-24 3.2E-28 255.0 37.1 275 1500-1813 113-422 (464)
45 3dwl_C Actin-related protein 2 99.9 8.7E-26 3E-30 264.4 17.4 217 1504-1735 7-271 (377)
46 2xzm_R RACK1; ribosome, transl 99.9 4.4E-24 1.5E-28 250.2 31.1 220 1498-1735 66-329 (343)
47 3vl1_A 26S proteasome regulato 99.9 4.1E-24 1.4E-28 253.4 30.5 282 1495-1811 85-418 (420)
48 3i2n_A WD repeat-containing pr 99.9 4.4E-24 1.5E-28 245.6 29.3 293 1502-1813 12-354 (357)
49 3iz6_a 40S ribosomal protein R 99.9 2.5E-24 8.5E-29 256.5 28.1 227 1493-1734 93-363 (380)
50 4g56_B MGC81050 protein; prote 99.9 2.6E-24 8.7E-29 255.3 27.6 218 1503-1735 89-332 (357)
51 3gre_A Serine/threonine-protei 99.9 3.5E-24 1.2E-28 256.7 29.0 229 1497-1738 51-351 (437)
52 3sfz_A APAF-1, apoptotic pepti 99.9 1E-23 3.4E-28 285.8 36.2 288 1503-1811 610-1033(1249)
53 3f3f_A Nucleoporin SEH1; struc 99.9 9E-24 3.1E-28 239.0 30.0 228 1502-1735 5-326 (351)
54 4h5i_A Guanine nucleotide-exch 99.9 2.3E-23 7.7E-28 248.2 33.3 264 1510-1811 15-342 (365)
55 3fm0_A Protein CIAO1; WDR39,SG 99.9 1.5E-23 5.1E-28 246.6 31.0 220 1504-1736 57-325 (345)
56 3bg1_A Protein SEC13 homolog; 99.9 2.2E-24 7.6E-29 250.6 23.6 222 1503-1736 8-283 (316)
57 4a11_B DNA excision repair pro 99.9 3.8E-23 1.3E-27 241.7 33.9 280 1495-1815 30-368 (408)
58 1gxr_A ESG1, transducin-like e 99.9 1.8E-23 6.3E-28 237.9 30.0 266 1510-1812 10-296 (337)
59 2hes_X YDR267CP; beta-propelle 99.9 1.5E-23 5.2E-28 245.1 30.0 238 1482-1735 30-317 (330)
60 3dm0_A Maltose-binding peripla 99.9 2E-23 6.7E-28 267.9 33.4 219 1499-1735 421-682 (694)
61 3mkq_A Coatomer beta'-subunit; 99.9 4.9E-23 1.7E-27 265.5 36.7 230 1491-1734 38-291 (814)
62 3v7d_B Cell division control p 99.9 1.6E-22 5.4E-27 244.3 38.1 265 1491-1793 145-449 (464)
63 3sfz_A APAF-1, apoptotic pepti 99.9 2.5E-22 8.5E-27 272.2 43.1 308 1490-1812 639-1074(1249)
64 3vl1_A 26S proteasome regulato 99.9 8.1E-24 2.8E-28 250.9 23.8 261 1511-1812 58-365 (420)
65 3mmy_A MRNA export factor; mRN 99.9 8.6E-23 2.9E-27 234.8 30.8 266 1495-1797 26-337 (368)
66 1yfq_A Cell cycle arrest prote 99.9 6.5E-23 2.2E-27 235.4 29.3 256 1501-1797 4-314 (342)
67 3i2n_A WD repeat-containing pr 99.9 8.3E-23 2.8E-27 235.0 30.0 215 1506-1734 63-341 (357)
68 3jrp_A Fusion protein of prote 99.9 2.5E-23 8.7E-28 240.7 25.8 226 1499-1737 2-278 (379)
69 2j04_B YDR362CP, TAU91; beta p 99.9 7.7E-24 2.6E-28 266.4 22.8 270 1502-1812 201-517 (524)
70 2pm9_A Protein WEB1, protein t 99.9 3.1E-23 1E-27 244.7 26.3 270 1510-1814 13-339 (416)
71 3zwl_B Eukaryotic translation 99.9 2.9E-22 9.9E-27 230.5 33.7 231 1492-1736 58-336 (369)
72 4aez_A CDC20, WD repeat-contai 99.9 2.2E-22 7.5E-27 240.4 32.3 267 1504-1812 87-380 (401)
73 4gga_A P55CDC, cell division c 99.9 8.8E-22 3E-26 237.0 37.4 264 1510-1812 106-395 (420)
74 4gga_A P55CDC, cell division c 99.9 1.8E-22 6.2E-27 243.0 31.2 231 1493-1735 130-384 (420)
75 1sq9_A Antiviral protein SKI8; 99.9 2E-22 6.7E-27 236.7 30.3 226 1498-1734 52-383 (397)
76 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.9E-21 6.7E-26 234.7 38.3 273 1491-1811 142-441 (445)
77 4ggc_A P55CDC, cell division c 99.9 1.7E-21 5.8E-26 220.9 34.0 261 1512-1811 28-314 (318)
78 4e54_B DNA damage-binding prot 99.9 4.9E-23 1.7E-27 249.4 22.7 241 1481-1734 137-419 (435)
79 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.3E-21 4.4E-26 236.3 35.0 269 1492-1812 102-391 (445)
80 3k26_A Polycomb protein EED; W 99.9 1.9E-22 6.6E-27 232.2 25.8 219 1507-1735 68-355 (366)
81 3dw8_B Serine/threonine-protei 99.9 1.5E-22 5E-27 241.6 25.5 230 1498-1734 71-435 (447)
82 1pgu_A Actin interacting prote 99.9 8.2E-22 2.8E-26 244.0 32.9 263 1506-1811 16-327 (615)
83 4aez_A CDC20, WD repeat-contai 99.9 9.1E-22 3.1E-26 235.1 31.8 226 1493-1734 118-368 (401)
84 1pgu_A Actin interacting prote 99.9 2.1E-21 7E-26 240.5 35.9 220 1499-1737 54-319 (615)
85 1k8k_C P40, ARP2/3 complex 41 99.9 9.6E-22 3.3E-26 227.9 30.3 208 1484-1706 28-274 (372)
86 3bws_A Protein LP49; two-domai 99.9 3.4E-21 1.2E-25 229.8 35.8 289 1498-1811 113-431 (433)
87 2aq5_A Coronin-1A; WD40 repeat 99.9 6.6E-22 2.2E-26 235.7 29.3 266 1511-1812 36-342 (402)
88 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.5E-21 5.3E-26 237.0 32.9 267 1510-1811 5-390 (450)
89 3ei3_B DNA damage-binding prot 99.9 6.4E-22 2.2E-26 233.0 28.5 221 1496-1734 104-371 (383)
90 4ggc_A P55CDC, cell division c 99.9 2.1E-21 7E-26 220.2 30.6 233 1491-1735 48-304 (318)
91 4aow_A Guanine nucleotide-bind 99.9 3.7E-21 1.3E-25 220.2 32.4 221 1498-1735 76-326 (340)
92 2aq5_A Coronin-1A; WD40 repeat 99.9 7.7E-22 2.6E-26 235.1 27.1 218 1499-1732 72-330 (402)
93 3odt_A Protein DOA1; ubiquitin 99.9 4.9E-21 1.7E-25 216.1 31.7 220 1492-1733 43-284 (313)
94 3dwl_C Actin-related protein 2 99.9 5.9E-22 2E-26 232.0 23.3 208 1482-1705 29-280 (377)
95 1p22_A F-BOX/WD-repeat protein 99.9 5.2E-21 1.8E-25 231.0 32.2 258 1504-1812 129-414 (435)
96 3mmy_A MRNA export factor; mRN 99.9 5.4E-21 1.8E-25 219.8 29.6 228 1498-1737 76-337 (368)
97 1l0q_A Surface layer protein; 99.9 4.1E-20 1.4E-24 217.5 36.9 226 1491-1734 15-262 (391)
98 2pm7_B Protein transport prote 99.9 3.8E-21 1.3E-25 221.2 27.3 209 1482-1705 27-284 (297)
99 1l0q_A Surface layer protein; 99.9 5E-20 1.7E-24 216.7 36.0 254 1522-1811 3-274 (391)
100 2j04_B YDR362CP, TAU91; beta p 99.9 5.8E-22 2E-26 249.4 20.4 206 1519-1739 171-421 (524)
101 2xyi_A Probable histone-bindin 99.9 8.9E-21 3.1E-25 229.6 26.8 219 1503-1734 123-398 (430)
102 2oaj_A Protein SNI1; WD40 repe 99.9 3.9E-20 1.3E-24 246.3 34.1 126 1495-1630 86-246 (902)
103 1p22_A F-BOX/WD-repeat protein 99.9 2.3E-20 7.8E-25 225.4 28.3 216 1492-1734 157-402 (435)
104 3vu4_A KMHSV2; beta-propeller 99.9 3.9E-20 1.3E-24 219.0 29.3 281 1498-1811 9-335 (355)
105 4a11_B DNA excision repair pro 99.9 1.4E-19 4.9E-24 211.5 33.3 240 1506-1773 97-373 (408)
106 3jro_A Fusion protein of prote 99.9 2.4E-21 8.4E-26 252.3 20.4 225 1501-1738 2-277 (753)
107 1yfq_A Cell cycle arrest prote 99.9 5.1E-20 1.7E-24 211.4 28.4 222 1500-1738 48-315 (342)
108 3f3f_A Nucleoporin SEH1; struc 99.9 3.3E-20 1.1E-24 209.9 26.3 201 1499-1714 48-345 (351)
109 3bg1_A Protein SEC13 homolog; 99.9 9.4E-21 3.2E-25 220.2 22.4 190 1499-1705 48-292 (316)
110 3gre_A Serine/threonine-protei 99.9 1.4E-20 4.8E-25 225.5 23.9 213 1506-1733 109-391 (437)
111 3lrv_A PRE-mRNA-splicing facto 99.9 1.6E-20 5.4E-25 219.7 22.5 205 1516-1735 43-280 (343)
112 3jrp_A Fusion protein of prote 99.9 5.7E-20 1.9E-24 212.7 26.4 218 1482-1708 29-289 (379)
113 4h5i_A Guanine nucleotide-exch 99.8 2.9E-20 1E-24 221.4 24.1 192 1506-1706 131-343 (365)
114 2oaj_A Protein SNI1; WD40 repe 99.8 1.8E-19 6.3E-24 239.9 34.2 197 1505-1712 14-248 (902)
115 2vdu_B TRNA (guanine-N(7)-)-me 99.8 6.1E-20 2.1E-24 223.0 26.9 213 1503-1733 97-371 (450)
116 3bws_A Protein LP49; two-domai 99.8 5.3E-19 1.8E-23 210.9 29.9 219 1503-1734 164-419 (433)
117 2xyi_A Probable histone-bindin 99.8 5.8E-19 2E-23 213.8 29.3 240 1545-1814 122-412 (430)
118 4gq1_A NUP37; propeller, trans 99.8 2E-20 6.8E-25 224.5 16.3 222 1506-1735 87-379 (393)
119 2j04_A TAU60, YPL007P, hypothe 99.8 2.9E-19 1E-23 224.9 25.8 246 1510-1810 16-295 (588)
120 2j04_A TAU60, YPL007P, hypothe 99.8 1.6E-19 5.3E-24 227.3 21.8 235 1503-1794 79-349 (588)
121 3lrv_A PRE-mRNA-splicing facto 99.8 4.5E-19 1.5E-23 207.4 21.5 221 1494-1735 64-322 (343)
122 1nir_A Nitrite reductase; hemo 99.8 2E-17 6.8E-22 208.8 36.0 289 1493-1811 164-513 (543)
123 3vgz_A Uncharacterized protein 99.8 5.8E-17 2E-21 186.8 35.2 255 1510-1795 41-333 (353)
124 3jro_A Fusion protein of prote 99.8 1.7E-18 5.9E-23 225.6 22.9 212 1483-1707 28-286 (753)
125 4gq1_A NUP37; propeller, trans 99.8 7E-19 2.4E-23 211.1 17.8 198 1499-1705 127-388 (393)
126 3vu4_A KMHSV2; beta-propeller 99.8 3E-17 1E-21 194.3 28.1 234 1535-1812 3-271 (355)
127 2w18_A PALB2, fancn, partner a 99.8 2.4E-18 8.2E-23 205.6 18.6 178 1519-1704 143-355 (356)
128 2hqs_A Protein TOLB; TOLB, PAL 99.8 4.5E-17 1.5E-21 197.7 27.9 259 1496-1788 103-410 (415)
129 3u4y_A Uncharacterized protein 99.8 4.1E-16 1.4E-20 179.2 33.6 259 1515-1812 3-304 (331)
130 2hqs_A Protein TOLB; TOLB, PAL 99.8 5.3E-17 1.8E-21 197.1 26.6 265 1511-1810 64-385 (415)
131 2ecf_A Dipeptidyl peptidase IV 99.8 1.5E-16 5E-21 204.3 30.7 270 1510-1811 37-412 (741)
132 2ecf_A Dipeptidyl peptidase IV 99.7 1.7E-16 5.8E-21 203.7 30.2 269 1512-1810 111-457 (741)
133 3u4y_A Uncharacterized protein 99.7 8.4E-16 2.9E-20 176.6 32.8 232 1492-1734 24-291 (331)
134 2ojh_A Uncharacterized protein 99.7 1.5E-16 5E-21 176.5 24.1 219 1502-1736 35-292 (297)
135 1xfd_A DIP, dipeptidyl aminope 99.7 6E-17 2.1E-21 207.0 23.3 276 1511-1811 18-392 (723)
136 1pby_B Quinohemoprotein amine 99.7 5.6E-16 1.9E-20 176.7 27.3 251 1522-1811 2-309 (337)
137 1nir_A Nitrite reductase; hemo 99.7 6.3E-16 2.2E-20 195.1 30.0 271 1517-1812 145-458 (543)
138 2w18_A PALB2, fancn, partner a 99.7 5.9E-16 2E-20 185.1 27.9 227 1497-1735 24-346 (356)
139 2z3z_A Dipeptidyl aminopeptida 99.7 1.4E-15 4.8E-20 194.4 30.8 275 1510-1811 82-434 (706)
140 1xfd_A DIP, dipeptidyl aminope 99.7 5.7E-16 1.9E-20 198.0 27.0 279 1495-1794 44-428 (723)
141 3vgz_A Uncharacterized protein 99.7 3.1E-15 1.1E-19 172.5 29.9 229 1495-1736 76-334 (353)
142 2ojh_A Uncharacterized protein 99.7 2.4E-15 8.1E-20 166.8 26.4 251 1526-1797 17-293 (297)
143 1ri6_A Putative isomerase YBHE 99.7 4.2E-15 1.5E-19 169.9 28.5 227 1499-1734 29-295 (343)
144 1ri6_A Putative isomerase YBHE 99.7 5.8E-15 2E-19 168.7 28.4 254 1523-1811 7-307 (343)
145 1pby_B Quinohemoprotein amine 99.7 5.5E-15 1.9E-19 168.5 26.4 243 1495-1774 18-319 (337)
146 1jmx_B Amine dehydrogenase; ox 99.7 3.7E-15 1.3E-19 171.1 24.8 233 1514-1774 4-334 (349)
147 3o4h_A Acylamino-acid-releasin 99.6 9.3E-15 3.2E-19 183.3 25.7 243 1510-1794 22-300 (582)
148 1k32_A Tricorn protease; prote 99.6 3.6E-14 1.2E-18 191.2 29.7 266 1499-1795 194-491 (1045)
149 1z68_A Fibroblast activation p 99.6 4.4E-15 1.5E-19 190.5 18.6 271 1514-1811 20-390 (719)
150 3hfq_A Uncharacterized protein 99.6 5.4E-14 1.9E-18 163.6 25.5 218 1506-1735 37-305 (347)
151 2z3z_A Dipeptidyl aminopeptida 99.6 7.2E-14 2.5E-18 178.7 26.0 254 1512-1796 28-376 (706)
152 3pe7_A Oligogalacturonate lyas 99.6 1.5E-13 5.2E-18 161.4 25.7 274 1497-1794 19-369 (388)
153 3hfq_A Uncharacterized protein 99.6 7.5E-13 2.6E-17 154.0 30.9 261 1523-1810 4-315 (347)
154 3scy_A Hypothetical bacterial 99.6 2.1E-12 7E-17 151.4 31.9 225 1499-1735 42-325 (361)
155 1z68_A Fibroblast activation p 99.5 1E-13 3.5E-18 177.8 22.6 293 1492-1810 40-441 (719)
156 1k32_A Tricorn protease; prote 99.5 2.6E-13 8.7E-18 182.9 26.8 217 1499-1737 236-493 (1045)
157 4a5s_A Dipeptidyl peptidase 4 99.5 3.9E-13 1.4E-17 174.6 24.6 212 1512-1734 19-338 (740)
158 2oit_A Nucleoporin 214KDA; NH2 99.5 2.6E-13 9E-18 166.4 20.6 184 1510-1707 37-279 (434)
159 2oit_A Nucleoporin 214KDA; NH2 99.5 1E-13 3.5E-18 170.1 16.8 155 1506-1671 90-279 (434)
160 3scy_A Hypothetical bacterial 99.5 6.1E-12 2.1E-16 147.4 30.7 264 1519-1811 11-336 (361)
161 1jmx_B Amine dehydrogenase; ox 99.5 2.4E-12 8.3E-17 147.7 24.4 216 1493-1716 26-335 (349)
162 4a5s_A Dipeptidyl peptidase 4 99.5 3.8E-12 1.3E-16 165.3 26.3 284 1493-1795 41-435 (740)
163 3pe7_A Oligogalacturonate lyas 99.4 2.9E-12 9.9E-17 150.5 20.6 231 1495-1735 67-370 (388)
164 3c5m_A Oligogalacturonate lyas 99.4 9.6E-12 3.3E-16 145.6 24.7 282 1497-1795 19-370 (396)
165 1jof_A Carboxy-CIS,CIS-muconat 99.4 2.6E-11 9E-16 143.6 26.9 215 1510-1734 40-328 (365)
166 2oiz_A Aromatic amine dehydrog 99.4 2.5E-11 8.6E-16 145.0 26.9 261 1495-1788 38-360 (361)
167 3o4h_A Acylamino-acid-releasin 99.4 7.1E-12 2.4E-16 157.2 19.8 215 1502-1736 57-302 (582)
168 1jof_A Carboxy-CIS,CIS-muconat 99.4 1.2E-10 4E-15 138.1 28.7 264 1523-1811 4-340 (365)
169 3azo_A Aminopeptidase; POP fam 99.3 5.7E-11 1.9E-15 150.8 26.2 223 1503-1734 18-312 (662)
170 3fvz_A Peptidyl-glycine alpha- 99.3 4E-10 1.4E-14 132.0 29.7 215 1510-1733 24-308 (329)
171 1q7f_A NHL, brain tumor CG1071 99.3 9.4E-10 3.2E-14 124.6 30.4 210 1506-1733 27-268 (286)
172 2dg1_A DRP35, lactonase; beta 99.3 2.2E-09 7.4E-14 124.2 31.3 222 1498-1734 34-298 (333)
173 3e5z_A Putative gluconolactona 99.3 1.1E-09 3.8E-14 125.1 28.2 218 1501-1735 20-276 (296)
174 2oiz_A Aromatic amine dehydrog 99.2 9.9E-10 3.4E-14 131.2 26.8 261 1520-1812 14-334 (361)
175 1qks_A Cytochrome CD1 nitrite 99.2 1.3E-08 4.6E-13 129.6 37.8 290 1493-1810 182-536 (567)
176 3c5m_A Oligogalacturonate lyas 99.2 1.4E-10 4.8E-15 135.8 18.1 211 1513-1734 84-369 (396)
177 2dg1_A DRP35, lactonase; beta 99.2 3.2E-09 1.1E-13 122.7 27.5 251 1510-1795 6-299 (333)
178 2xdw_A Prolyl endopeptidase; a 99.2 9.6E-10 3.3E-14 142.1 25.6 214 1506-1733 122-397 (710)
179 2gop_A Trilobed protease; beta 99.1 5.2E-09 1.8E-13 121.2 25.6 229 1511-1785 16-311 (347)
180 3azo_A Aminopeptidase; POP fam 99.1 2.3E-09 7.7E-14 136.2 23.1 223 1500-1732 59-351 (662)
181 2gop_A Trilobed protease; beta 99.1 4.8E-09 1.6E-13 121.5 22.9 200 1511-1734 60-318 (347)
182 3no2_A Uncharacterized protein 99.1 6.1E-09 2.1E-13 120.4 23.6 202 1520-1734 4-231 (276)
183 1qks_A Cytochrome CD1 nitrite 99.1 3.8E-08 1.3E-12 125.4 31.0 272 1519-1812 165-477 (567)
184 3dsm_A Uncharacterized protein 99.0 2.4E-08 8.2E-13 117.3 25.3 249 1529-1810 15-300 (328)
185 3dsm_A Uncharacterized protein 99.0 2.9E-08 9.9E-13 116.7 25.9 206 1511-1733 45-284 (328)
186 3fvz_A Peptidyl-glycine alpha- 99.0 2.6E-08 9E-13 116.6 25.3 180 1506-1699 88-310 (329)
187 2xdw_A Prolyl endopeptidase; a 99.0 6.5E-08 2.2E-12 125.1 31.3 263 1519-1811 81-413 (710)
188 1rwi_B Serine/threonine-protei 99.0 3.6E-08 1.2E-12 110.0 23.5 208 1511-1733 25-251 (270)
189 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 3.8E-08 1.3E-12 112.1 23.5 208 1510-1734 18-286 (314)
190 3sjl_D Methylamine dehydrogena 99.0 8.4E-08 2.9E-12 116.9 26.8 264 1493-1786 64-384 (386)
191 1q7f_A NHL, brain tumor CG1071 98.9 4.4E-07 1.5E-11 102.7 30.5 221 1549-1812 27-280 (286)
192 2mad_H Methylamine dehydrogena 98.9 6.1E-07 2.1E-11 108.4 33.3 252 1493-1775 52-361 (373)
193 2bkl_A Prolyl endopeptidase; m 98.9 1.6E-08 5.3E-13 130.7 20.4 212 1506-1733 118-380 (695)
194 3e5z_A Putative gluconolactona 98.9 5E-07 1.7E-11 103.2 30.1 220 1541-1794 17-275 (296)
195 3sjl_D Methylamine dehydrogena 98.9 1.6E-07 5.4E-12 114.4 25.3 271 1515-1811 38-362 (386)
196 2bkl_A Prolyl endopeptidase; m 98.9 1.8E-07 6.3E-12 120.7 27.4 259 1519-1811 77-396 (695)
197 2mad_H Methylamine dehydrogena 98.9 1.8E-06 6.2E-11 104.2 34.3 262 1517-1811 28-349 (373)
198 2z2n_A Virginiamycin B lyase; 98.8 6.2E-06 2.1E-10 92.6 35.3 210 1504-1733 10-242 (299)
199 3no2_A Uncharacterized protein 98.8 5.8E-07 2E-11 103.9 26.6 212 1496-1733 23-259 (276)
200 3g4e_A Regucalcin; six bladed 98.8 1.4E-06 4.6E-11 100.6 28.9 211 1510-1735 13-261 (297)
201 1yr2_A Prolyl oligopeptidase; 98.8 1.2E-07 4.1E-12 123.4 21.7 211 1510-1733 163-424 (741)
202 1yr2_A Prolyl oligopeptidase; 98.8 1E-06 3.4E-11 114.8 29.1 260 1519-1811 116-440 (741)
203 3c75_H MADH, methylamine dehyd 98.7 1.4E-06 4.9E-11 107.5 25.6 250 1493-1772 104-409 (426)
204 3hrp_A Uncharacterized protein 98.7 3.4E-06 1.2E-10 102.9 28.6 210 1510-1733 131-397 (409)
205 3c75_H MADH, methylamine dehyd 98.7 1.8E-06 6.2E-11 106.5 26.0 265 1520-1810 83-400 (426)
206 2ghs_A AGR_C_1268P; regucalcin 98.7 4.2E-06 1.4E-10 98.2 28.1 207 1511-1735 50-291 (326)
207 1xip_A Nucleoporin NUP159; bet 98.7 2.1E-07 7E-12 113.6 17.1 141 1506-1661 86-230 (388)
208 2qe8_A Uncharacterized protein 98.6 1.6E-06 5.3E-11 102.4 21.4 220 1510-1734 17-309 (343)
209 3iuj_A Prolyl endopeptidase; h 98.6 1E-06 3.6E-11 114.1 21.2 212 1506-1733 126-388 (693)
210 1rwi_B Serine/threonine-protei 98.6 2.9E-06 9.9E-11 94.6 21.8 174 1510-1699 67-252 (270)
211 1mda_H Methylamine dehydrogena 98.6 1.8E-06 6.1E-11 104.6 21.5 227 1532-1785 47-366 (368)
212 3dr2_A Exported gluconolactona 98.6 6.5E-06 2.2E-10 95.1 25.1 213 1503-1734 39-295 (305)
213 2qc5_A Streptogramin B lactona 98.6 0.00011 3.6E-09 82.5 34.1 205 1510-1733 20-247 (300)
214 2z2n_A Virginiamycin B lyase; 98.6 3.5E-05 1.2E-09 86.4 29.8 204 1507-1733 55-283 (299)
215 1xip_A Nucleoporin NUP159; bet 98.5 8.1E-07 2.8E-11 108.4 15.2 166 1510-1699 38-232 (388)
216 3g4e_A Regucalcin; six bladed 98.4 7.7E-06 2.6E-10 94.3 21.2 179 1510-1699 54-260 (297)
217 1pjx_A Dfpase, DIISOPROPYLFLUO 98.4 0.00014 4.8E-09 82.6 31.0 225 1551-1811 17-298 (314)
218 1mda_H Methylamine dehydrogena 98.4 4.6E-06 1.6E-10 101.1 17.5 221 1494-1725 52-366 (368)
219 3iuj_A Prolyl endopeptidase; h 98.4 2E-05 6.7E-10 102.2 24.3 217 1549-1794 126-389 (693)
220 3dr2_A Exported gluconolactona 98.3 3.1E-05 1.1E-09 89.4 22.2 193 1501-1704 78-302 (305)
221 2qc5_A Streptogramin B lactona 98.3 0.00027 9.2E-09 79.3 29.2 206 1510-1733 62-289 (300)
222 2ece_A 462AA long hypothetical 98.3 6E-05 2.1E-09 93.3 24.3 209 1563-1794 93-399 (462)
223 2ece_A 462AA long hypothetical 98.3 3.4E-05 1.2E-09 95.4 21.8 204 1519-1733 93-398 (462)
224 2hz6_A Endoplasmic reticulum t 98.2 1.1E-06 3.8E-11 105.4 8.0 188 1520-1729 8-217 (369)
225 2ghs_A AGR_C_1268P; regucalcin 98.2 5.7E-05 1.9E-09 88.6 22.3 177 1510-1699 90-290 (326)
226 1fwx_A Nitrous oxide reductase 98.2 3.8E-05 1.3E-09 97.8 21.3 206 1519-1737 99-409 (595)
227 3hrp_A Uncharacterized protein 98.1 0.001 3.4E-08 81.2 30.7 168 1553-1732 132-339 (409)
228 3nol_A Glutamine cyclotransfer 98.1 0.00012 4.1E-09 84.9 20.1 189 1499-1703 32-247 (262)
229 2iwa_A Glutamine cyclotransfer 98.1 0.00014 4.8E-09 84.6 20.4 193 1498-1703 9-228 (266)
230 1kb0_A Quinohemoprotein alcoho 98.0 0.00025 8.4E-09 92.2 24.5 251 1520-1793 127-537 (677)
231 1yiq_A Quinohemoprotein alcoho 98.0 0.00061 2.1E-08 88.8 27.7 248 1521-1794 121-536 (689)
232 1fwx_A Nitrous oxide reductase 98.0 0.00035 1.2E-08 89.1 24.1 203 1564-1795 100-407 (595)
233 2qe8_A Uncharacterized protein 98.0 0.00011 3.6E-09 86.8 18.0 182 1506-1699 64-309 (343)
234 3nok_A Glutaminyl cyclase; bet 98.0 0.00015 5E-09 84.3 18.6 190 1499-1703 44-257 (268)
235 3mbr_X Glutamine cyclotransfer 97.9 0.00045 1.5E-08 79.3 21.1 192 1498-1703 9-226 (243)
236 2hz6_A Endoplasmic reticulum t 97.9 1.9E-06 6.4E-11 103.5 0.6 182 1496-1694 27-217 (369)
237 1kb0_A Quinohemoprotein alcoho 97.8 0.00074 2.5E-08 87.8 22.5 206 1521-1733 174-537 (677)
238 1npe_A Nidogen, entactin; glyc 97.8 0.0065 2.2E-07 68.5 27.6 204 1511-1728 37-263 (267)
239 1npe_A Nidogen, entactin; glyc 97.7 0.015 5.2E-07 65.5 28.5 232 1522-1789 2-264 (267)
240 1yiq_A Quinohemoprotein alcoho 97.7 0.0012 4.2E-08 86.0 21.8 198 1529-1733 181-535 (689)
241 3q7m_A Lipoprotein YFGL, BAMB; 97.5 0.011 3.8E-07 69.7 25.2 200 1520-1733 52-283 (376)
242 2fp8_A Strictosidine synthase; 97.4 0.022 7.6E-07 66.1 25.0 173 1512-1698 21-246 (322)
243 3hxj_A Pyrrolo-quinoline quino 97.4 0.0098 3.4E-07 67.9 21.2 200 1510-1733 60-272 (330)
244 2iwa_A Glutamine cyclotransfer 97.3 0.0065 2.2E-07 70.7 19.6 170 1596-1795 24-225 (266)
245 2p4o_A Hypothetical protein; p 97.3 0.064 2.2E-06 62.0 27.7 213 1510-1735 32-277 (306)
246 3q7m_A Lipoprotein YFGL, BAMB; 97.3 0.046 1.6E-06 64.4 26.4 218 1520-1774 102-346 (376)
247 3hxj_A Pyrrolo-quinoline quino 97.2 0.011 3.9E-07 67.4 19.4 191 1521-1733 107-312 (330)
248 2xe4_A Oligopeptidase B; hydro 97.2 0.02 7E-07 75.1 24.1 112 1511-1627 175-305 (751)
249 1kv9_A Type II quinohemoprotei 97.1 0.081 2.8E-06 68.7 28.5 248 1521-1794 117-520 (668)
250 2z6h_A Catenin beta-1, beta-ca 97.1 0.035 1.2E-06 71.3 24.0 136 560-710 177-315 (644)
251 1jdh_A Beta-catenin; beta-cate 97.0 0.027 9.4E-07 69.3 22.1 433 542-1131 78-528 (529)
252 2z6h_A Catenin beta-1, beta-ca 96.9 0.044 1.5E-06 70.4 23.1 153 543-709 76-233 (644)
253 3nol_A Glutamine cyclotransfer 96.9 0.029 9.8E-07 65.2 18.5 168 1486-1666 63-246 (262)
254 1k3i_A Galactose oxidase precu 96.8 0.057 2E-06 69.6 23.1 114 1514-1629 190-326 (656)
255 3qqz_A Putative uncharacterize 96.7 0.13 4.4E-06 59.5 22.9 103 1503-1610 21-138 (255)
256 2ad6_A Methanol dehydrogenase 96.7 0.12 4E-06 66.0 24.8 110 1521-1634 115-289 (571)
257 3mbr_X Glutamine cyclotransfer 96.7 0.067 2.3E-06 61.5 20.0 171 1483-1666 38-225 (243)
258 3nok_A Glutaminyl cyclase; bet 96.7 0.025 8.5E-07 65.8 16.5 161 1490-1666 77-256 (268)
259 4hw6_A Hypothetical protein, I 96.7 0.28 9.5E-06 60.4 26.7 142 1511-1663 140-292 (433)
260 3tc9_A Hypothetical hydrolase; 96.7 0.28 9.5E-06 60.3 26.6 140 1511-1663 138-289 (430)
261 2z6g_A B-catenin; FULL-length, 96.6 0.11 3.8E-06 68.6 23.8 136 560-710 313-451 (780)
262 1kv9_A Type II quinohemoprotei 96.6 0.081 2.8E-06 68.7 22.1 206 1521-1733 162-518 (668)
263 4a2l_A BT_4663, two-component 96.6 0.41 1.4E-05 62.8 28.9 209 1510-1733 406-648 (795)
264 2p4o_A Hypothetical protein; p 96.5 0.15 5.1E-06 59.0 21.5 175 1510-1699 72-276 (306)
265 1w6s_A Methanol dehydrogenase 96.5 0.54 1.8E-05 60.5 28.5 108 1523-1634 123-295 (599)
266 2z6g_A B-catenin; FULL-length, 96.4 0.18 6.2E-06 66.7 23.8 155 543-710 169-328 (780)
267 1flg_A Protein (quinoprotein e 96.3 0.15 5.2E-06 65.2 21.4 155 1574-1733 291-546 (582)
268 4b8j_A Importin subunit alpha- 96.3 0.13 4.6E-06 63.8 20.5 155 542-710 136-296 (528)
269 4a2l_A BT_4663, two-component 96.3 2.9 0.0001 54.8 34.1 212 1510-1733 215-469 (795)
270 2ad6_A Methanol dehydrogenase 96.2 0.16 5.6E-06 64.7 21.2 154 1575-1733 273-524 (571)
271 3l6x_A Catenin delta-1; cateni 96.2 0.11 3.8E-06 66.6 19.4 138 560-711 85-246 (584)
272 4hxt_A De novo protein OR329; 96.1 0.023 7.7E-07 62.7 11.4 223 588-923 17-245 (252)
273 2ism_A Putative oxidoreductase 96.1 0.68 2.3E-05 55.2 24.4 96 1510-1610 31-152 (352)
274 2xe4_A Oligopeptidase B; hydro 96.0 0.18 6.2E-06 66.2 20.9 111 1513-1626 224-354 (751)
275 2fp8_A Strictosidine synthase; 95.8 0.38 1.3E-05 55.7 20.2 136 1511-1662 81-246 (322)
276 3a9g_A Putative uncharacterize 95.8 1.1 3.8E-05 53.6 24.7 217 1510-1733 29-329 (354)
277 2ism_A Putative oxidoreductase 95.8 1.5 5.1E-05 52.3 25.7 106 1553-1662 32-152 (352)
278 4b8j_A Importin subunit alpha- 95.8 0.26 9E-06 61.2 19.8 59 560-625 112-171 (528)
279 1jdh_A Beta-catenin; beta-cate 95.7 0.14 5E-06 62.9 17.1 156 542-710 35-195 (529)
280 1w6s_A Methanol dehydrogenase 95.7 0.33 1.1E-05 62.5 20.8 56 1574-1634 278-350 (599)
281 1flg_A Protein (quinoprotein e 95.6 0.17 5.6E-06 64.9 17.5 172 1514-1698 250-547 (582)
282 3tpo_A Importin subunit alpha- 95.4 1.4 4.9E-05 55.2 24.8 140 560-710 157-303 (529)
283 3amr_A 3-phytase; beta-propell 95.4 0.94 3.2E-05 54.7 21.9 180 1520-1714 39-272 (355)
284 3v65_B Low-density lipoprotein 95.1 2.8 9.4E-05 50.6 25.2 141 1510-1663 116-265 (386)
285 3kya_A Putative phosphatase; s 95.1 1.4 4.8E-05 55.6 23.1 109 1511-1625 140-277 (496)
286 3a9g_A Putative uncharacterize 95.1 6.6 0.00023 46.8 28.2 139 1553-1699 30-216 (354)
287 3v64_C Agrin; beta propeller, 95.1 5.7 0.00019 47.1 27.4 140 1510-1663 73-222 (349)
288 3v65_B Low-density lipoprotein 94.9 7.8 0.00027 46.6 28.3 170 1513-1699 80-264 (386)
289 3ul1_B Importin subunit alpha- 94.8 1.8 6.2E-05 54.0 23.0 140 560-710 138-284 (510)
290 3qqz_A Putative uncharacterize 94.6 3.2 0.00011 47.9 22.6 179 1546-1734 21-241 (255)
291 2jdq_A Importin alpha-1 subuni 94.6 1.8 6.2E-05 51.8 21.7 156 541-709 82-243 (450)
292 2g8s_A Glucose/sorbosone dehyd 94.5 3.1 0.00011 49.6 23.0 98 1510-1610 18-147 (353)
293 3v9f_A Two-component system se 94.4 18 0.00061 47.3 32.3 209 1510-1733 258-512 (781)
294 1k3i_A Galactose oxidase precu 94.3 0.73 2.5E-05 59.3 18.4 70 1512-1583 245-323 (656)
295 3v9f_A Two-component system se 94.3 6.7 0.00023 51.3 27.6 209 1510-1733 313-556 (781)
296 3das_A Putative oxidoreductase 94.2 10 0.00036 45.5 26.8 149 1510-1663 32-220 (347)
297 3v64_C Agrin; beta propeller, 94.1 12 0.00042 44.2 29.2 172 1512-1699 36-221 (349)
298 3p5b_L Low density lipoprotein 93.8 16 0.00053 44.3 27.9 138 1510-1661 112-262 (400)
299 4hxt_A De novo protein OR329; 93.7 0.31 1.1E-05 53.5 11.6 156 541-710 61-222 (252)
300 2xbg_A YCF48-like protein; pho 93.7 5.7 0.00019 46.5 22.9 179 1510-1699 122-311 (327)
301 2p9w_A MAL S 1 allergenic prot 93.5 2.2 7.6E-05 51.1 19.0 141 1513-1662 16-202 (334)
302 4db6_A Armadillo repeat protei 93.2 0.58 2E-05 50.4 12.5 154 543-710 31-190 (210)
303 1ijq_A LDL receptor, low-densi 93.1 16 0.00056 42.4 27.4 147 1510-1669 30-194 (316)
304 3tc9_A Hypothetical hydrolase; 92.8 1.1 3.9E-05 54.9 15.5 132 1592-1734 136-288 (430)
305 4db8_A Armadillo-repeat protei 92.5 0.18 6.1E-06 56.0 7.3 156 541-710 71-232 (252)
306 3das_A Putative oxidoreductase 92.3 2.7 9.3E-05 50.6 17.6 138 1552-1698 32-219 (347)
307 2g8s_A Glucose/sorbosone dehyd 92.3 14 0.00047 44.0 23.7 143 1553-1697 19-214 (353)
308 4hw6_A Hypothetical protein, I 92.2 4.7 0.00016 49.6 20.1 108 1510-1625 182-303 (433)
309 3sre_A PON1, serum paraoxonase 92.1 13 0.00043 44.9 23.0 159 1572-1733 81-284 (355)
310 4db8_A Armadillo-repeat protei 91.8 0.48 1.6E-05 52.5 9.7 155 542-710 30-190 (252)
311 3m0c_C LDL receptor, low-densi 91.7 30 0.001 46.0 28.1 189 1510-1713 424-639 (791)
312 2xbg_A YCF48-like protein; pho 91.4 25 0.00086 41.0 24.3 203 1510-1733 80-310 (327)
313 3m0c_C LDL receptor, low-densi 91.1 39 0.0013 45.0 28.1 159 1529-1699 402-576 (791)
314 3sov_A LRP-6, low-density lipo 90.9 16 0.00055 42.8 22.0 140 1511-1663 36-185 (318)
315 3kya_A Putative phosphatase; s 90.9 25 0.00084 44.4 24.6 134 1553-1699 140-328 (496)
316 3p5b_L Low density lipoprotein 90.7 33 0.0011 41.4 25.0 113 1510-1629 159-280 (400)
317 3amr_A 3-phytase; beta-propell 89.5 15 0.00051 44.5 20.1 163 1567-1735 43-251 (355)
318 1n7d_A LDL receptor, low-densi 89.0 2 6.9E-05 56.1 13.3 140 1511-1663 407-559 (699)
319 3sov_A LRP-6, low-density lipo 88.6 25 0.00086 41.2 21.1 109 1511-1626 80-197 (318)
320 1cru_A Protein (soluble quinop 88.6 9.3 0.00032 47.3 18.2 100 1510-1611 27-162 (454)
321 1ijq_A LDL receptor, low-densi 88.2 43 0.0015 38.8 30.0 157 1531-1699 10-182 (316)
322 1cru_A Protein (soluble quinop 88.1 8.1 0.00028 47.9 17.2 106 1553-1662 28-161 (454)
323 3ei3_A DNA damage-binding prot 87.7 1.1E+02 0.0036 42.7 34.2 72 1510-1582 554-635 (1158)
324 3s25_A Hypothetical 7-bladed b 87.4 19 0.00066 42.1 19.0 161 1514-1698 57-240 (302)
325 3sre_A PON1, serum paraoxonase 87.2 36 0.0012 41.0 21.6 175 1513-1699 53-285 (355)
326 3sbq_A Nitrous-oxide reductase 86.4 39 0.0013 43.4 21.6 99 1685-1794 327-453 (638)
327 3ii7_A Kelch-like protein 7; p 86.2 21 0.00073 40.5 18.3 139 1520-1671 55-226 (306)
328 1tl2_A L10, protein (tachylect 85.5 5 0.00017 45.8 12.0 150 1510-1670 41-208 (236)
329 4a0p_A LRP6, LRP-6, low-densit 83.5 1.1E+02 0.0039 39.3 25.6 166 1510-1690 37-217 (628)
330 4db6_A Armadillo repeat protei 83.2 1.7 5.8E-05 46.7 6.8 130 541-684 71-205 (210)
331 1n7d_A LDL receptor, low-densi 82.1 5 0.00017 52.5 11.8 109 1512-1627 455-572 (699)
332 2vpj_A Kelch-like protein 12; 81.0 43 0.0015 37.8 17.8 140 1520-1672 62-233 (301)
333 2vpj_A Kelch-like protein 12; 80.2 60 0.0021 36.6 18.7 176 1520-1709 14-234 (301)
334 3pbp_A Nucleoporin NUP82; beta 79.5 17 0.00057 45.2 14.3 102 1519-1626 30-158 (452)
335 3s94_A LRP-6, low-density lipo 79.4 1.5E+02 0.0052 38.0 24.5 147 1510-1669 40-199 (619)
336 2jdq_A Importin alpha-1 subuni 78.8 4.7 0.00016 48.2 9.2 153 543-709 253-423 (450)
337 2xzh_A Clathrin heavy chain 1; 78.6 68 0.0023 38.8 18.6 141 1573-1727 48-209 (365)
338 2xtc_A F-box-like/WD repeat-co 78.3 1.8 6.1E-05 42.6 4.3 34 1165-1198 2-35 (90)
339 3tj1_A RNA polymerase I-specif 77.3 0.49 1.7E-05 60.9 0.2 6 1425-1430 73-78 (649)
340 1bpo_A Protein (clathrin); cla 75.6 86 0.0029 39.3 18.8 141 1573-1727 47-208 (494)
341 3tj1_A RNA polymerase I-specif 75.2 0.61 2.1E-05 60.1 0.2 8 1423-1430 75-82 (649)
342 1xqr_A HSPBP1 protein; armadil 75.1 6.2 0.00021 46.3 8.7 139 544-698 105-249 (296)
343 1wa5_B Importin alpha subunit; 74.5 16 0.00055 45.3 12.7 141 556-710 290-438 (530)
344 3now_A UNC-45 protein, SD10334 73.9 8.1 0.00028 51.5 10.2 165 541-710 512-718 (810)
345 1bpo_A Protein (clathrin); cla 73.5 1.9E+02 0.0066 36.2 26.9 206 1514-1735 70-330 (494)
346 3sbq_A Nitrous-oxide reductase 73.1 31 0.0011 44.3 14.4 68 1555-1627 326-409 (638)
347 2p9w_A MAL S 1 allergenic prot 73.1 22 0.00074 42.7 12.6 108 1511-1626 64-215 (334)
348 4a0p_A LRP6, LRP-6, low-densit 72.6 2.2E+02 0.0077 36.6 30.0 158 1529-1699 13-184 (628)
349 1wa5_B Importin alpha subunit; 71.7 8.8 0.0003 47.7 9.4 157 541-710 148-309 (530)
350 1zgk_A Kelch-like ECH-associat 71.6 53 0.0018 37.4 15.3 140 1520-1672 70-242 (308)
351 3s25_A Hypothetical 7-bladed b 71.5 1E+02 0.0035 36.0 17.8 126 1515-1662 109-240 (302)
352 2xzh_A Clathrin heavy chain 1; 70.2 2E+02 0.0067 34.9 27.9 206 1514-1735 71-331 (365)
353 3nmw_A APC variant protein; AR 69.3 26 0.00087 42.1 12.3 153 542-710 148-315 (354)
354 2xn4_A Kelch-like protein 2; s 68.8 65 0.0022 36.4 15.1 105 1520-1630 61-186 (302)
355 2wg3_C Hedgehog-interacting pr 67.0 1.4E+02 0.0046 37.3 18.5 103 1554-1663 16-157 (463)
356 1xqr_A HSPBP1 protein; armadil 66.5 9 0.00031 45.0 7.4 136 561-710 77-219 (296)
357 3pbp_A Nucleoporin NUP82; beta 65.6 32 0.0011 42.7 12.1 76 1511-1589 67-164 (452)
358 2be1_A Serine/threonine-protei 65.3 5.5 0.00019 47.9 5.3 108 1522-1634 11-138 (339)
359 3s94_A LRP-6, low-density lipo 65.2 2.2E+02 0.0076 36.6 20.5 112 1510-1628 84-204 (619)
360 3opb_A SWI5-dependent HO expre 64.7 12 0.00041 49.5 8.7 160 856-1104 351-510 (778)
361 3nmw_A APC variant protein; AR 64.3 11 0.00039 45.1 7.9 78 1036-1132 255-333 (354)
362 2zwa_A Leucine carboxyl methyl 64.0 1.3E+02 0.0046 39.0 18.4 112 1514-1628 445-579 (695)
363 1uuj_A Platelet-activating fac 61.2 7.8 0.00027 38.0 4.5 29 1169-1197 11-39 (88)
364 1zgk_A Kelch-like ECH-associat 60.9 1.1E+02 0.0037 34.8 15.1 104 1520-1629 24-149 (308)
365 3nmz_A APC variant protein; pr 59.7 25 0.00085 43.8 9.9 152 543-710 265-431 (458)
366 3ii7_A Kelch-like protein 7; p 58.6 1.6E+02 0.0055 33.2 15.9 104 1520-1629 101-228 (306)
367 3tpo_A Importin subunit alpha- 58.5 68 0.0023 40.0 13.7 149 544-710 274-430 (529)
368 3dad_A FH1/FH2 domain-containi 58.2 2.6 9E-05 50.4 0.9 116 590-712 135-263 (339)
369 2wg3_C Hedgehog-interacting pr 57.1 1.2E+02 0.0041 37.7 15.5 100 1510-1611 14-157 (463)
370 2uvk_A YJHT; unknown function, 56.4 2.8E+02 0.0095 31.9 20.6 24 1520-1543 65-98 (357)
371 4asc_A Kelch repeat and BTB do 56.2 2.2E+02 0.0074 32.4 16.5 108 1516-1629 41-177 (315)
372 2zwa_A Leucine carboxyl methyl 56.0 3.1E+02 0.011 35.6 19.8 148 1519-1672 396-579 (695)
373 3ul1_B Importin subunit alpha- 55.3 90 0.0031 38.8 14.0 149 544-710 255-411 (510)
374 2xn4_A Kelch-like protein 2; s 55.0 2.7E+02 0.0091 31.3 17.9 104 1521-1630 16-137 (302)
375 3nmz_A APC variant protein; pr 54.3 14 0.00048 46.0 6.5 271 547-922 171-453 (458)
376 3now_A UNC-45 protein, SD10334 52.2 32 0.0011 45.9 9.6 155 540-710 600-760 (810)
377 1xm9_A Plakophilin 1; armadill 51.3 14 0.00049 45.4 5.8 136 560-711 39-196 (457)
378 2woz_A Kelch repeat and BTB do 49.6 3.3E+02 0.011 30.8 16.8 171 1523-1708 18-233 (318)
379 1xi4_A Clathrin heavy chain; a 48.6 90 0.0031 44.3 13.1 132 1497-1632 135-295 (1630)
380 2d68_A FOP, FGFR1OP; alpha hel 46.4 16 0.00054 35.4 4.0 30 1169-1198 19-48 (82)
381 2i7u_A Four-alpha-helix bundle 45.8 4.1 0.00014 35.4 -0.1 10 12-21 23-32 (62)
382 4asc_A Kelch repeat and BTB do 43.7 4E+02 0.014 30.1 19.4 101 1523-1629 7-129 (315)
383 1tl2_A L10, protein (tachylect 38.6 5E+02 0.017 29.7 17.7 137 1522-1667 5-158 (236)
384 2woz_A Kelch repeat and BTB do 37.8 3.3E+02 0.011 30.8 14.2 108 1516-1629 52-187 (318)
385 3ott_A Two-component system se 34.3 8.6E+02 0.03 31.2 26.2 206 1510-1733 63-296 (758)
386 4gq2_M Nucleoporin NUP120; bet 31.8 96 0.0033 42.1 9.5 37 1511-1547 237-273 (950)
387 1xi4_A Clathrin heavy chain; a 31.7 1.3E+02 0.0045 42.7 10.6 114 1573-1699 47-169 (1630)
388 2uvk_A YJHT; unknown function, 29.5 6.9E+02 0.023 28.6 18.4 21 1520-1540 19-40 (357)
389 1xm9_A Plakophilin 1; armadill 28.4 58 0.002 40.0 6.1 69 544-623 67-136 (457)
390 4h3o_A Lectin; cadmium, plant 28.1 4.4E+02 0.015 25.9 12.5 49 1648-1703 53-104 (105)
391 3tt9_A Plakophilin-2; cell adh 27.3 74 0.0025 36.1 6.2 160 541-711 27-205 (233)
392 3dad_A FH1/FH2 domain-containi 26.7 25 0.00084 42.3 2.2 80 827-920 153-232 (339)
393 4aco_A Centromere DNA-binding 25.3 15 0.00051 48.1 0.0 15 790-804 73-87 (956)
394 3l6x_A Catenin delta-1; cateni 23.1 1E+02 0.0035 39.7 7.0 146 544-705 332-492 (584)
395 3ott_A Two-component system se 22.5 1.3E+03 0.045 29.5 24.4 211 1510-1733 373-615 (758)
396 3grl_A General vesicular trans 20.5 86 0.0029 40.8 5.4 63 553-622 199-262 (651)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=6.5e-31 Score=317.08 Aligned_cols=267 Identities=15% Similarity=0.229 Sum_probs=235.8
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
.++.+|. +.|++++|+|++.+|++|+.||+|+|||+.+++...++.+|...|+++ +|+|++++|+++ .|++|+|||
T Consensus 102 ~~l~gh~-~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v--~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 102 YALSGHR-SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI--SFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp CEEECCS-SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEE--EECTTSSEEEEEETTSCCCEEE
T ss_pred EeecccC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEE--EEcCCCCEEEEEeCCCeEEEEe
Confidence 3467999 999999999999999999999999999999999999999999999999 889999999995 599999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc--eEEEEcC
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY--SQIHFSP 1654 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~--~vVaFSP 1654 (1922)
+.+ ++++.++.+| .+++|+|++++|+++ +.|++|++||++++.++.++. +|.. ..+.|+|
T Consensus 179 ~~~--~~~~~~~~~h~~~V~~v~~~p~~~~l~s~---s~D~~i~~wd~~~~~~~~~~~---------~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 179 FQG--FECIRTMHGHDHNVSSVSIMPNGDHIVSA---SRDKTIKMWEVQTGYCVKTFT---------GHREWVRMVRPNQ 244 (410)
T ss_dssp TTS--SCEEECCCCCSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTCCEEEEEE---------CCSSCEEEEEECT
T ss_pred CCC--CceeEEEcCCCCCEEEEEEeCCCCEEEEE---eCCCeEEEEECCCCcEEEEEe---------CCCccEEEEEECC
Confidence 987 7788888775 789999999999999 889999999999999988886 4544 4499999
Q ss_pred CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecC--------------------CCEEEEEe-----EEEe
Q 000177 1655 SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPA--------------------GNEVIINS-----EVWD 1703 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPd--------------------G~~LASGS-----eIWD 1703 (1922)
++.+|++++ ++||+++++++..+.+|...+ ++.|+|+ |.+|++|+ ++||
T Consensus 245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 245 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 999999887 999999999999999999988 9999996 67899998 5999
Q ss_pred cCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEE
Q 000177 1704 LRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLD 1780 (1922)
Q Consensus 1704 LrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~d 1780 (1922)
+++++++.++.+|.. ++++|+|+|++|++++. +..+++||..+...+.++.. ...|.+
T Consensus 325 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-------------------D~~i~vwd~~~~~~~~~~~~h~~~v~~ 385 (410)
T 1vyh_C 325 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-------------------DKTLRVWDYKNKRCMKTLNAHEHFVTS 385 (410)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-------------------TTEEEEECCTTSCCCEEEECCSSCEEE
T ss_pred CCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC-------------------CCeEEEEECCCCceEEEEcCCCCcEEE
Confidence 999999999999987 79999999999999852 34577788777777777765 456999
Q ss_pred EEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1781 FATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1781 La~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++|+|++.+++... .|..+++|++
T Consensus 386 l~~~~~~~~l~sgs------~D~~i~vW~~ 409 (410)
T 1vyh_C 386 LDFHKTAPYVVTGS------VDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEE------TTSEEEEEC-
T ss_pred EEEcCCCCEEEEEe------CCCcEEEEeC
Confidence 99999999988653 4578999975
No 2
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=2.3e-29 Score=295.00 Aligned_cols=271 Identities=19% Similarity=0.256 Sum_probs=229.1
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
++..++|++|. +.|++++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.++ .|+|++++|+++ .|+.|
T Consensus 45 ~~~~~~l~gH~-~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 45 MRTRRTLRGHL-AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC--AYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp CCEEEEECCCS-SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEE--EECTTSSEEEEEETTCEE
T ss_pred chhheeecCCC-CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEE--EECCCCCEEEEEeCCCeE
Confidence 45567899999 999999999999999999999999999999999999999999999999 899999999995 59999
Q ss_pred EEeccCCCCC--CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--ce
Q 000177 1577 HLWNASSIAG--GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--YS 1648 (1922)
Q Consensus 1577 kLWDl~t~~g--k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~~ 1648 (1922)
++||+.+... .....+.+| .++.|++++. ++++ +.|++|++||+.+++++.++. +|. +.
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~---s~d~~i~~wd~~~~~~~~~~~---------~h~~~v~ 188 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTS---SGDTTCALWDIETGQQTTTFT---------GHTGDVM 188 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEE---ETTSCEEEEETTTTEEEEEEC---------CCSSCEE
T ss_pred EEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEE---ECCCcEEEEECCCCcEEEEEc---------CCCCceE
Confidence 9999986211 233445554 6789998875 7777 789999999999999988875 454 44
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~ 1717 (1922)
.++|+|+++++++++ ++||+++++++.+|.+|...+ +++|+|+|++|++++ ++||+++++.+.++..+.
T Consensus 189 ~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~ 268 (340)
T 1got_B 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268 (340)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCC
Confidence 599999999999887 999999999999999999988 999999999999999 699999999888876332
Q ss_pred ----ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEE
Q 000177 1718 ----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGL 1792 (1922)
Q Consensus 1718 ----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAV 1792 (1922)
.++++|+|+|++|+++.. +..+++||..+...+.++.. ...|..++|+|++.+++.
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~-------------------d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYD-------------------DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEET-------------------TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred cccceEEEEECCCCCEEEEECC-------------------CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEE
Confidence 279999999999999853 23567777777776666654 456999999999999986
Q ss_pred EecCCCCCccceEEEEE
Q 000177 1793 ITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1793 Ve~dds~d~dSsVRLyE 1809 (1922)
.. .|+.+++|+
T Consensus 330 ~s------~D~~i~iWd 340 (340)
T 1got_B 330 GS------WDSFLKIWN 340 (340)
T ss_dssp EE------TTSCEEEEC
T ss_pred Ec------CCccEEecC
Confidence 53 457899984
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.9e-29 Score=293.42 Aligned_cols=270 Identities=16% Similarity=0.192 Sum_probs=231.1
Q ss_pred eEEecCCCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCc--eeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1501 WRTCRDDAGALLTCITFLGD----SSHIAVGSHTKELKIFDSNSSSP--LESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPD----G~lLASGS~DGtIkIWDl~tgk~--l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
.+.+++|. +.|++++|+|+ +.+|+||+.|++|+||++.+++. ..++.+|...|.++ .|++++.+++++ .|
T Consensus 25 ~~~~~~H~-~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~--~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 25 FKQEQAHD-DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSV--DISHTLPIAASSSLD 101 (321)
T ss_dssp EEETTSSS-SCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE--EECSSSSEEEEEETT
T ss_pred eeecccCC-CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEE--EECCCCCEEEEEeCC
Confidence 45667999 99999999984 67999999999999999987654 44679999999999 889999999995 59
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
++|+|||+.+ ++++..+..+ .+++|+|++++|+++ +.|+.|++||+++++....+. .++.....
T Consensus 102 ~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~g---~~dg~v~i~~~~~~~~~~~~~-------~~~~~v~~ 169 (321)
T 3ow8_A 102 AHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPDSQYLATG---THVGKVNIFGVESGKKEYSLD-------TRGKFILS 169 (321)
T ss_dssp SEEEEEETTT--TEEEEEEECCTTCCCCEEECTTSSEEEEE---CTTSEEEEEETTTCSEEEEEE-------CSSSCEEE
T ss_pred CcEEEEECCC--CCEEEEEeCCCccEEEEEECCCCCEEEEE---cCCCcEEEEEcCCCceeEEec-------CCCceEEE
Confidence 9999999988 7777777653 689999999999999 889999999999998887775 12344556
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
++|+|++++|++++ ++||++++++++++.+|...+ +++|+|++++|++++ +|||+++++++.++.+|..
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~ 249 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC
Confidence 99999999999887 999999999999999999888 999999999999998 5999999999999999987
Q ss_pred --eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEec
Q 000177 1719 --TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~ 1795 (1922)
++++|+|+|.+|++++. +..+++||..+...+.++.. ...|..++|+|++.+|+...
T Consensus 250 ~v~~~~~sp~~~~l~s~s~-------------------D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~- 309 (321)
T 3ow8_A 250 WVLNVAFCPDDTHFVSSSS-------------------DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG- 309 (321)
T ss_dssp CEEEEEECTTSSEEEEEET-------------------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-
T ss_pred ceEEEEECCCCCEEEEEeC-------------------CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe-
Confidence 79999999999999852 34577888888777777654 56799999999999988663
Q ss_pred CCCCCccceEEEEEe
Q 000177 1796 DDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1796 dds~d~dSsVRLyEV 1810 (1922)
.++.+++|+.
T Consensus 310 -----~d~~i~vwd~ 319 (321)
T 3ow8_A 310 -----DDQEIHIYDC 319 (321)
T ss_dssp -----TTCCEEEEEC
T ss_pred -----CCCeEEEEeC
Confidence 3478999985
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=3.4e-29 Score=289.07 Aligned_cols=273 Identities=12% Similarity=0.163 Sum_probs=228.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
+...++|++|. +.|++++|+|++++|++|+.||+|+|||+.++..+.++.+|..+|.++ .|+|++++|+++ .|++|
T Consensus 3 l~~~~~~~~h~-~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 3 LDIKKTFSNRS-DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG--KFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CCCEEEEEEEC-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EEEGGGTEEEEEETTSEE
T ss_pred ceeEEeecCCC-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEE--EEeCCCCEEEEECCCCEE
Confidence 45567899999 999999999999999999999999999999999999999999999999 889999999985 59999
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee-eeeccccccccCCCCcceEEE
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE-AKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i-~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
++||+.+ ++++..+.+| ++++|+|++++|++| +.|++|++||++++... ..+. ++.+.+..++
T Consensus 80 ~vwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~sg---s~D~~v~lWd~~~~~~~~~~~~-------~h~~~v~~v~ 147 (304)
T 2ynn_A 80 RVFNYNT--GEKVVDFEAHPDYIRSIAVHPTKPYVLSG---SDDLTVKLWNWENNWALEQTFE-------GHEHFVMCVA 147 (304)
T ss_dssp EEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEEEEEGGGTTEEEEEEC-------CCCSCEEEEE
T ss_pred EEEECCC--CcEEEEEeCCCCcEEEEEEcCCCCEEEEE---CCCCeEEEEECCCCcchhhhhc-------ccCCcEEEEE
Confidence 9999998 7888888876 789999999999999 88999999999987443 4443 2334455699
Q ss_pred EcC-CCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEec--CCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1652 FSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHP--AGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1652 FSP-dG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSP--dG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
|+| ++.+|++++ ++||++++.+...+.. +...+ .+.|+| ++.+|++++ +|||+++++++.++.+|
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h 227 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC
Confidence 999 568888877 9999998887766654 44556 788876 788999999 69999999999999999
Q ss_pred Cc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCce--EE
Q 000177 1717 DQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSF--VG 1791 (1922)
Q Consensus 1717 ~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~--LA 1791 (1922)
.. ++++|+|++.+|++++ .+..+++||..+++.+.++.. ...++.++++|++.. ++
T Consensus 228 ~~~v~~~~~~p~~~~l~s~s-------------------~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 288 (304)
T 2ynn_A 228 MSNVSFAVFHPTLPIIISGS-------------------EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEE-------------------TTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEE
T ss_pred CCCEEEEEECCCCCEEEEEc-------------------CCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEE
Confidence 77 7999999999999985 234578899888888888876 456999999998863 44
Q ss_pred EEecCCCCCccceEEEEEec
Q 000177 1792 LITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1792 VVe~dds~d~dSsVRLyEVG 1811 (1922)
.. .+..+.+|.++
T Consensus 289 sg-------~~~g~~~~~~~ 301 (304)
T 2ynn_A 289 SG-------FDNGFTVLSLG 301 (304)
T ss_dssp EE-------ETTEEEEEECC
T ss_pred Ee-------cCCceEEEEec
Confidence 33 12346677664
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=1.5e-28 Score=290.79 Aligned_cols=271 Identities=16% Similarity=0.241 Sum_probs=228.6
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
+..++|++|. +.|+|++|+|++++|+||+.||+|+|||..+++....+..|...|.++ .|+|++.+|+++ .|++++
T Consensus 55 ~~~~~l~gH~-~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~--~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 55 KTRRTLKGHG-NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMAC--AYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEE--EECTTSSEEEEESTTSEEE
T ss_pred EEEEEecCCC-CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEE--EECCCCCEEEEeeCCCCEE
Confidence 5567899999 999999999999999999999999999999999999999999999999 899999999996 499999
Q ss_pred EeccCCCC----CCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--c
Q 000177 1578 LWNASSIA----GGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--Y 1647 (1922)
Q Consensus 1578 LWDl~t~~----gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~ 1647 (1922)
+|++.... ......+.+| .++.|+|++..|+++ +.|++|++||+++++++.++. +|. +
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~---s~D~~v~lwd~~~~~~~~~~~---------~h~~~v 199 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA---SGDGTCALWDVESGQLLQSFH---------GHGADV 199 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEE---ETTSEEEEEETTTCCEEEEEE---------CCSSCE
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEE---eCCCcEEEEeCCCCeEEEEEc---------CCCCCe
Confidence 99986411 1223444444 789999999999999 889999999999999988886 454 4
Q ss_pred eEEEEcC--CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1648 SQIHFSP--SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1648 ~vVaFSP--dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
.+++|+| ++++|++++ ++||+++++++..+.+|...+ +++|+|+|.+|++++ ++||+++++.+..+.
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~ 279 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 4578877 568999877 999999999999999999988 999999999999999 699999998887776
Q ss_pred CCC----ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCce
Q 000177 1715 SLD----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSF 1789 (1922)
Q Consensus 1715 gH~----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~ 1789 (1922)
.+. ..+++|+|+|.+|+++..+ ..+++||..+...+.++.. ...|..++|+|++.+
T Consensus 280 ~~~~~~~~~~~~~s~~g~~l~~g~~d-------------------~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~ 340 (354)
T 2pbi_B 280 KESIIFGASSVDFSLSGRLLFAGYND-------------------YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA 340 (354)
T ss_dssp CTTCCSCEEEEEECTTSSEEEEEETT-------------------SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSC
T ss_pred CCCcccceeEEEEeCCCCEEEEEECC-------------------CcEEEEECCCCceEEEEECCCCcEEEEEECCCCCE
Confidence 443 2799999999999998532 3467777777666666644 456999999999999
Q ss_pred EEEEecCCCCCccceEEEEE
Q 000177 1790 VGLITMDDQEDMFSSARIYE 1809 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyE 1809 (1922)
|+... .|+.+++|+
T Consensus 341 l~sgs------~D~~v~vW~ 354 (354)
T 2pbi_B 341 FCSGS------WDHTLRVWA 354 (354)
T ss_dssp EEEEE------TTSEEEEEC
T ss_pred EEEEc------CCCCEEecC
Confidence 98653 457899984
No 6
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=8.2e-29 Score=288.24 Aligned_cols=270 Identities=15% Similarity=0.211 Sum_probs=218.8
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-----CceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSS-----SPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tg-----k~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
+....+|++|. +.|++++|+|++ ++|+||+.|++|++|++... .++.++.+|...|+++ .|+|++++|+++
T Consensus 7 ~~l~~~l~gH~-~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~--~~s~dg~~l~s~ 83 (319)
T 3frx_A 7 LVLRGTLEGHN-GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC--TLTADGAYALSA 83 (319)
T ss_dssp EEEEEEECCCS-SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEE--EECTTSSEEEEE
T ss_pred EEEEEEEcccc-ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEE--EECCCCCEEEEE
Confidence 45567899999 999999999965 89999999999999998643 3467889999999999 899999999995
Q ss_pred -cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.|++|+|||+.+ ++++..+.+| .+++|+|++++|+++ +.|++|++||++ ++++.++. +|.
T Consensus 84 s~D~~v~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---s~D~~i~vwd~~-~~~~~~~~---------~h~ 148 (319)
T 3frx_A 84 SWDKTLRLWDVAT--GETYQRFVGHKSDVMSVDIDKKASMIISG---SRDKTIKVWTIK-GQCLATLL---------GHN 148 (319)
T ss_dssp ETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSCEEEEE---ETTSCEEEEETT-SCEEEEEC---------CCS
T ss_pred eCCCEEEEEECCC--CCeeEEEccCCCcEEEEEEcCCCCEEEEE---eCCCeEEEEECC-CCeEEEEe---------ccC
Confidence 599999999998 7888888775 789999999999999 889999999997 45555554 444
Q ss_pred c--eEEEEcCCC------CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCC
Q 000177 1647 Y--SQIHFSPSD------TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1647 ~--~vVaFSPdG------~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTg 1707 (1922)
. ..+.|+|.+ .++++++ ++||+++++....+.+|...+ +++|+|+|++|++++ +|||+.++
T Consensus 149 ~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp SCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred CcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 4 448898854 4788777 999999999999999999999 999999999999998 59999999
Q ss_pred eEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee---------ccCCc
Q 000177 1708 RLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI---------PVDRC 1777 (1922)
Q Consensus 1708 klL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi---------dvkr~ 1777 (1922)
+++.++..+.. .+++|+|+|.+++++.... +++|+......+..+ .....
T Consensus 229 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~--------------------i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (319)
T 3frx_A 229 KAMYTLSAQDEVFSLAFSPNRYWLAAATATG--------------------IKVFSLDPQYLVDDLRPEFAGYSKAAEPH 288 (319)
T ss_dssp EEEEEEECCSCEEEEEECSSSSEEEEEETTE--------------------EEEEEETTEEEEEEECCCCTTCCGGGCCC
T ss_pred cEEEEecCCCcEEEEEEcCCCCEEEEEcCCC--------------------cEEEEeCcCeeeeccCccccccccCcCcc
Confidence 99999987665 8999999999999884321 222222211111111 12446
Q ss_pred eEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1778 VLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1778 I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+..++|+|+|++|+... .+..+++|++.
T Consensus 289 v~~~~~spdg~~l~sg~------~Dg~i~vWd~~ 316 (319)
T 3frx_A 289 AVSLAWSADGQTLFAGY------TDNVIRVWQVM 316 (319)
T ss_dssp EEEEEECTTSSEEEEEE------TTSCEEEEEEE
T ss_pred eeEEEECCCCCEEEEee------cCceEEEEEEe
Confidence 88999999999998653 35789999974
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=8.4e-29 Score=295.01 Aligned_cols=284 Identities=15% Similarity=0.190 Sum_probs=229.8
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..+...++|++|. +.|++++|+|++++|+||+.||+|+|||+.+++...++.+|...|.++ +|+|++++|+++ .|+
T Consensus 54 ~~~~~~~~l~gH~-~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~--~~s~~g~~las~~~d~ 130 (380)
T 3iz6_a 54 TDLVCCRTLQGHS-GKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMEC--AFAPNGQSVACGGLDS 130 (380)
T ss_dssp CCCEEEEEECCCS-SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCC--EECTTSSEEEECCSSS
T ss_pred ceeEEeecccccc-cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEE--EECCCCCEEEEeeCCC
Confidence 3456678899999 999999999999999999999999999999999999999999999999 899999999995 599
Q ss_pred cEEEeccCCCC-----CCcceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1575 DVHLWNASSIA-----GGPMHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1575 tVkLWDl~t~~-----gk~l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
.|++||+.+.. ......+.+| .++.|+|+ +..|++| +.|++|++||+++++++..+.... ..+
T Consensus 131 ~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~---s~D~~i~~wd~~~~~~~~~~~~~~----~~~ 203 (380)
T 3iz6_a 131 ACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG---SGDQTCVLWDVTTGQRISIFGSEF----PSG 203 (380)
T ss_dssp CCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE---CTTSCEEEECTTTCCEEEEECCCS----SSS
T ss_pred cEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE---CCCCcEEEEEcCCCcEEEEeeccc----CCC
Confidence 99999996511 1223455565 67889996 4578998 899999999999999888774111 124
Q ss_pred Ccc--eEEEEcC-CCCeEeecc-----EEEEcC-CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeE
Q 000177 1645 HAY--SQIHFSP-SDTMLLWNG-----ILWDRR-NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1645 h~~--~vVaFSP-dG~lLaSgg-----rLWDlr-tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgkl 1709 (1922)
|.. ..++|+| ++++|++++ ++||++ .++++..+.+|...| +++|+|+|++|++++ +|||+++++.
T Consensus 204 h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp CCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred CccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence 444 4488876 788999887 999998 457889999999998 999999999999999 6999999999
Q ss_pred EEEEcCCC---------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec-----cC
Q 000177 1710 LRSVPSLD---------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP-----VD 1775 (1922)
Q Consensus 1710 L~tl~gH~---------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid-----vk 1775 (1922)
+..+..+. .++++|+|+|++|+++..+ ..+++||......+..+. ..
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-------------------g~i~vwd~~~~~~~~~~~~~~~~h~ 344 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN-------------------GDCYVWDTLLAEMVLNLGTLQNSHE 344 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-------------------SCEEEEETTTCCEEEEECCSCSSCC
T ss_pred EEEecccccccccccCceEEEEECCCCCEEEEEECC-------------------CCEEEEECCCCceEEEEecccCCCC
Confidence 98887542 2689999999999998532 345666665555544441 24
Q ss_pred CceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCCC
Q 000177 1776 RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1776 r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
..|.+++|+|++.+|+.. ..|+.+++|++...+
T Consensus 345 ~~v~~l~~s~dg~~l~sg------s~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 345 GRISCLGLSSDGSALCTG------SWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCCCEEEECSSSSEEEEE------CTTSCEEEEECCSSS
T ss_pred CceEEEEECCCCCEEEEe------eCCCCEEEEecCCCc
Confidence 569999999999998865 345789999986543
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=8.1e-28 Score=275.86 Aligned_cols=277 Identities=16% Similarity=0.265 Sum_probs=232.3
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..+....++.+|. +.|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.++ .|+|++++|+++ .|+
T Consensus 11 ~~~~~~~~~~gh~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 11 PNYALKFTLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV--AWSSDSNLLVSASDDK 87 (312)
T ss_dssp CCCEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTS
T ss_pred CCceeEEEEcccC-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEE--EEcCCCCEEEEECCCC
Confidence 3456677889999 999999999999999999999999999999999999999999999999 889999999985 699
Q ss_pred cEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
+|++||+.+ ++++..+.+| .++.|+|++++|+++ +.|++|++||+++++++..+. .+......+
T Consensus 88 ~i~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~ 155 (312)
T 4ery_A 88 TLKIWDVSS--GKCLKTLKGHSNYVFCCNFNPQSNLIVSG---SFDESVRIWDVKTGKCLKTLP-------AHSDPVSAV 155 (312)
T ss_dssp EEEEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEE
T ss_pred EEEEEECCC--CcEEEEEcCCCCCEEEEEEcCCCCEEEEE---eCCCcEEEEECCCCEEEEEec-------CCCCcEEEE
Confidence 999999998 7788888765 789999999999999 889999999999999888875 122344559
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ 1718 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~ 1718 (1922)
+|+|+++++++++ ++||+++++.+..+.. +...+ .++|+|++++|++++ ++||+++++++..+.+|..
T Consensus 156 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (312)
T 4ery_A 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN 235 (312)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCC
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCC
Confidence 9999999999887 9999999998887754 44455 899999999999998 5999999999999988865
Q ss_pred ----eeEEEc-cCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEE
Q 000177 1719 ----TTITFN-ARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGL 1792 (1922)
Q Consensus 1719 ----~sVaFS-PdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAV 1792 (1922)
....|+ +++.+|+++. .+..+++|+..+...+..+.. ...|..++|+|++..++.
T Consensus 236 ~~~~~~~~~~~~~~~~l~sg~-------------------~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 236 EKYCIFANFSVTGGKWIVSGS-------------------EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp SSSCCCEEEECSSSCEEEECC-------------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred ceEEEEEEEEeCCCcEEEEEC-------------------CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence 233444 6788888874 234577788777777777764 456999999999999987
Q ss_pred EecCCCCCccceEEEEEe
Q 000177 1793 ITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1793 Ve~dds~d~dSsVRLyEV 1810 (1922)
... +.+..+++|+.
T Consensus 297 ~~~----~~d~~i~~W~~ 310 (312)
T 4ery_A 297 AAL----ENDKTIKLWKS 310 (312)
T ss_dssp EEC----TTTCCEEEEEC
T ss_pred EEc----cCCccEEEecC
Confidence 642 23578999975
No 9
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=3e-27 Score=277.00 Aligned_cols=274 Identities=18% Similarity=0.191 Sum_probs=211.0
Q ss_pred ceeeEEecCCCCCCEEEEEE-----cC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCC
Q 000177 1498 FRPWRTCRDDAGALLTCITF-----LG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaF-----SP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpD 1564 (1922)
+....+|++|. +.|++++| ++ ++++|+||+.|++|+|||+.+. .+...+.+|...|+++ .|+|+
T Consensus 11 ~~~~~~l~gH~-~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~--~~~~~ 87 (343)
T 2xzm_R 11 VVKRGILEGHS-DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDL--ALSQE 87 (343)
T ss_dssp EEEEEEEECCS-SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEE--EECSS
T ss_pred eeeeeeeccch-hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEE--EECCC
Confidence 45577899999 99999999 77 9999999999999999999754 3456789999999999 88999
Q ss_pred CcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccc
Q 000177 1565 TQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVN 1639 (1922)
Q Consensus 1565 G~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~ 1639 (1922)
+.+|+++ .|++|+|||+++ ++++.++.+| ++++|+|++++|+++ +.|++|++||+... ....+. .
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---~~d~~i~~wd~~~~-~~~~~~----~ 157 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRT--GTTYKRFVGHQSEVYSVAFSPDNRQILSA---GAEREIKLWNILGE-CKFSSA----E 157 (343)
T ss_dssp TTEEEEEETTSEEEEEETTS--SCEEEEEECCCSCEEEEEECSSTTEEEEE---ETTSCEEEEESSSC-EEEECC----T
T ss_pred CCEEEEEcCCCcEEEEECCC--CcEEEEEcCCCCcEEEEEECCCCCEEEEE---cCCCEEEEEeccCC-ceeeee----c
Confidence 9999985 599999999998 7788888775 789999999999999 88999999999843 332221 0
Q ss_pred ccCCCCcceEEEEcCCC----------CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----
Q 000177 1640 LTGRGHAYSQIHFSPSD----------TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG----------~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
...+......++|+|++ .++++++ ++|| ..++.+..+.+|...+ +++|+|+|++|++++
T Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~ 236 (343)
T 2xzm_R 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK 236 (343)
T ss_dssp TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe
Confidence 11123344559999987 6788776 9999 4567788899999988 999999999999999
Q ss_pred -EEEecCC-CeEEEEEc-CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceee--ee--
Q 000177 1700 -EVWDLRK-FRLLRSVP-SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA--TI-- 1772 (1922)
Q Consensus 1700 -eIWDLrT-gklL~tl~-gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~Ia--Ti-- 1772 (1922)
+|||+.+ ......+. ++..++++|+|++.+++++. ++. +++|+..+...+. ++
T Consensus 237 v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~-d~~-------------------v~iw~~~~~~~~~~~~~~~ 296 (343)
T 2xzm_R 237 LLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQG-------------------VKIFNLMTQSKAPVCTIEA 296 (343)
T ss_dssp EEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEE-SSC-------------------EEEEESSSCCSCSEEECCC
T ss_pred EEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEEC-CCC-------------------EEEEEeCCCCCCceEEeec
Confidence 5999954 44445553 44458999999999988763 221 2333332222111 11
Q ss_pred ----------ccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1773 ----------PVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1773 ----------dvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.....|..++|+|++.+|++.. .++.+++|++.
T Consensus 297 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~------~Dg~v~~w~~~ 339 (343)
T 2xzm_R 297 EPITKAEGQKGKNPQCTSLAWNALGKKLFAGF------TDGVIRTFSFE 339 (343)
T ss_dssp CSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE------TTSEEEEEEEE
T ss_pred CcchhhhhhcCCCCceEEEEECCCCCeEEEec------CCceEEEEEEE
Confidence 1234589999999999998653 45789999863
No 10
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=1.2e-26 Score=265.80 Aligned_cols=277 Identities=16% Similarity=0.181 Sum_probs=217.4
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCC-----ceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSS-----PLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk-----~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
..++....+|+||. +.|++|+|+|+ +++|+|||.||+|+|||+.+.+ +..++.+|...|+++ .|+|++++|
T Consensus 25 ~~~~~l~~tL~GH~-~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~--~~s~dg~~l 101 (340)
T 4aow_A 25 TEQMTLRGTLKGHN-GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV--VISSDGQFA 101 (340)
T ss_dssp -CEEEEEEEECCCS-SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEE--EECTTSSEE
T ss_pred CCceEEEEEECCcc-CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEE--EECCCCCEE
Confidence 34456677899999 99999999997 6899999999999999997654 456789999999999 889999999
Q ss_pred EEe-cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1569 LSS-SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1569 aSS-sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+++ .|+.|++|+... ......... ...+.+++++++|+++ +.|+.+++||+.......... ..+
T Consensus 102 ~s~~~d~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---s~d~~~~~~d~~~~~~~~~~~------~~~ 170 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTT--GTTTRRFVGHTKDVLSVAFSSDNRQIVSG---SRDKTIKLWNTLGVCKYTVQD------ESH 170 (340)
T ss_dssp EEEETTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEEECTTSCEEEEECS------SSC
T ss_pred EEEcccccceEEeecc--cceeeeecCCCCceeEEEEeecCccceee---cCCCeEEEEEeCCCceEEEEe------ccc
Confidence 995 599999999987 444444333 3678899999999999 889999999998765443322 112
Q ss_pred CCcceEEEEcCCC--CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1644 GHAYSQIHFSPSD--TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1644 gh~~~vVaFSPdG--~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
......++|++++ .++++++ ++||+++++++..+.+|...+ +++|+|+|++|++++ ++||+++.+.+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL 250 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee
Confidence 3344458888875 4566665 899999999999999999999 999999999999998 59999999999
Q ss_pred EEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec----------cCCceE
Q 000177 1711 RSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP----------VDRCVL 1779 (1922)
Q Consensus 1711 ~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid----------vkr~I~ 1779 (1922)
..+..+.. +++.|+|++.+++++. + ..+++|+......+..+. ....|.
T Consensus 251 ~~~~~~~~v~~~~~~~~~~~~~~~~-d-------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~ 310 (340)
T 4aow_A 251 YTLDGGDIINALCFSPNRYWLCAAT-G-------------------PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCT 310 (340)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEE-T-------------------TEEEEEETTTTEEEEEECCC-------CCCCCEE
T ss_pred eeecCCceEEeeecCCCCceeeccC-C-------------------CEEEEEECCCCeEEEeccccceeeeccCCCCCEE
Confidence 99987766 8999999998877763 2 224444444333332221 245699
Q ss_pred EEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1780 DFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1780 dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.++|+|++.+|++.. .|+.|++|++.
T Consensus 311 ~l~~s~dg~~l~sgs------~Dg~v~iW~~~ 336 (340)
T 4aow_A 311 SLAWSADGQTLFAGY------TDNLVRVWQVT 336 (340)
T ss_dssp EEEECTTSSEEEEEE------TTSCEEEEEEE
T ss_pred EEEECCCCCEEEEEe------CCCEEEEEeCC
Confidence 999999999998653 34789999874
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=1.6e-27 Score=280.46 Aligned_cols=281 Identities=13% Similarity=0.177 Sum_probs=214.5
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee--e-eccCCCCeeEEEeeecCCCcEEEEe-c
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE--S-CTSHQAPVTLVQSHLSGETQLLLSS-S 1572 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~--t-L~gHss~VtsLq~afSpDG~lLaSS-s 1572 (1922)
.+..+++|++|.++.|++++|+|+|++|++|+.|++|+|||+.++.... . ..+|...|+++ +|+|++++|+++ .
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~--~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV--AWSPCGNYLASASF 81 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEE--EECTTSSEEEEEET
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEE--EECCCCCEEEEEEC
Confidence 3566788999983499999999999999999999999999998776432 2 37899999999 899999999995 5
Q ss_pred CCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce---eeeeccccccccCCCC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL---EAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~---i~tL~d~s~~~~~~gh 1645 (1922)
|++|+|||+......++.++.+| ++++|+|++++|+++ +.|++|++||+.++.. +..+. .+..
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~---s~D~~v~iwd~~~~~~~~~~~~~~-------~h~~ 151 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC---SRDKSVWVWEVDEEDEYECVSVLN-------SHTQ 151 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEEECTTSCEEEEEEEC-------CCCS
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEE---ECCCeEEEEECCCCCCeEEEEEec-------CcCC
Confidence 99999999986323456777765 789999999999999 8899999999987643 33332 1223
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCc--ceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC------
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSV--PVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK------ 1706 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk--~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT------ 1706 (1922)
.+..++|+|++++|++++ ++||+++++ ++.++.+|...| +++|+|+|++|++++ +|||...
T Consensus 152 ~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~ 231 (345)
T 3fm0_A 152 DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231 (345)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTC
T ss_pred CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCcc
Confidence 345599999999999887 999999875 567889999999 999999999999999 5999732
Q ss_pred ---------CeEEEEEcC-CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCC--------
Q 000177 1707 ---------FRLLRSVPS-LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINY-------- 1766 (1922)
Q Consensus 1707 ---------gklL~tl~g-H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dy-------- 1766 (1922)
.+++.++.+ |.. ++++|+|++..|+++..+... ++|+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i-------------------~vw~~~~~~~~~~~~~ 292 (345)
T 3fm0_A 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI-------------------RVFQEDPNSDPQQPTF 292 (345)
T ss_dssp CCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCE-------------------EEEEECTTSCTTSCCE
T ss_pred ceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeE-------------------EEEEeCCCCCcceeeE
Confidence 245566665 443 799999999999998654432 33322111
Q ss_pred ceeeee--ccCCceEEEEEcCCCc-eEEEEecCCCCCccceEEEEEecCCC
Q 000177 1767 SDIATI--PVDRCVLDFATERTDS-FVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1767 s~IaTi--dvkr~I~dLa~SPdds-~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
...... .....|..++|+|++. +++... .|+.|++|++...+
T Consensus 293 ~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s------~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 293 SLTAHLHQAHSQDVNCVAWNPKEPGLLASCS------DDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEETTSSSSCEEEEEECSSSTTEEEEEE------TTSCEEEEEECC--
T ss_pred EEEeeecccccCcEeEeEEeCCCceEEEEcC------CCCcEEEEEecCCC
Confidence 011111 1245699999999985 666542 45789999986554
No 12
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=278.08 Aligned_cols=240 Identities=15% Similarity=0.224 Sum_probs=210.1
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEee
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSH 1560 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~a 1560 (1922)
.|+.++..+.|.+...+.....++.+|. ..|++++|++++.++++|+.|++|+|||+.+++.+..+..|...|.++ .
T Consensus 53 tgs~D~~v~vW~~~~~~~~~~~~l~gh~-~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~--~ 129 (321)
T 3ow8_A 53 TGSLDDLVKVWKWRDERLDLQWSLEGHQ-LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTL--A 129 (321)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCE--E
T ss_pred EEcCCCCEEEEECCCCCeeeeeeeccCC-CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEE--E
Confidence 3455555555555444445566789999 999999999999999999999999999999999999999999999999 8
Q ss_pred ecCCCcEEEEec-CCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1561 LSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1561 fSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
|+|++++|++++ |++|++||+.+ ++....+.. +.+++|+|++++|+++ +.|+.|++||+++++.+.++.
T Consensus 130 ~spdg~~l~~g~~dg~v~i~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~lasg---~~dg~i~iwd~~~~~~~~~~~- 203 (321)
T 3ow8_A 130 FSPDSQYLATGTHVGKVNIFGVES--GKKEYSLDTRGKFILSIAYSPDGKYLASG---AIDGIINIFDIATGKLLHTLE- 203 (321)
T ss_dssp ECTTSSEEEEECTTSEEEEEETTT--CSEEEEEECSSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTTEEEEEEC-
T ss_pred ECCCCCEEEEEcCCCcEEEEEcCC--CceeEEecCCCceEEEEEECCCCCEEEEE---cCCCeEEEEECCCCcEEEEEc-
Confidence 999999999964 99999999988 666766655 3789999999999999 889999999999999988885
Q ss_pred ccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEec
Q 000177 1636 TSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDL 1704 (1922)
.+...+..++|+|++++|++++ ++||+++++.+.++.+|...+ +++|+|+|.+|++++ +|||+
T Consensus 204 ------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 204 ------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp ------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence 1223455699999999999887 999999999999999999988 999999999999999 69999
Q ss_pred CCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1705 RKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1705 rTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
++++++.++.+|.. ++++|+|+|.+|+++..
T Consensus 278 ~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 99999999998876 89999999999999863
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.96 E-value=9.7e-28 Score=284.62 Aligned_cols=271 Identities=15% Similarity=0.176 Sum_probs=207.9
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCCcee----eeccCCCCeeEEEeeecCCCcEEEEec
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSH------TKELKIFDSNSSSPLE----SCTSHQAPVTLVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~------DGtIkIWDl~tgk~l~----tL~gHss~VtsLq~afSpDG~lLaSSs 1572 (1922)
....|. ..|++++|||||++|++|+. |++|++|+..++.... ...+|...|+++ +|+|++++|+++.
T Consensus 37 ~p~~H~-~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~s~d~~~l~~s~ 113 (357)
T 4g56_B 37 APACME-VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDV--AWVSEKGILVASD 113 (357)
T ss_dssp ---CCC-SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEE--EEETTTEEEEEET
T ss_pred Cccccc-CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEE--EEcCCCCEEEEEC
Confidence 345698 99999999999999999997 7889999988775433 346799999999 8899999998899
Q ss_pred CCcEEEeccCCCCCCcc--e--Eecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1573 SQDVHLWNASSIAGGPM--H--SFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l--~--tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
|++|+|||+.+ ++.+ . ...+ +++++|+|++++|+++ +.|++|++||+++++++..+. .+.
T Consensus 114 dg~v~lWd~~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sg---s~dg~v~iwd~~~~~~~~~~~-------~h~ 181 (357)
T 4g56_B 114 SGAVELWEILE--KESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSG---GKDFSVKVWDLSQKAVLKSYN-------AHS 181 (357)
T ss_dssp TSCEEEC----------CCCCEEECCCSSCEEEEEECSSSSEEEEE---ETTSCEEEEETTTTEEEEEEC-------CCS
T ss_pred CCEEEEeeccc--cceeEEEeeccCCCCCCEEEEEECCCCCEEEEE---eCCCeEEEEECCCCcEEEEEc-------CCC
Confidence 99999999987 4332 2 2223 4889999999999999 889999999999999988885 122
Q ss_pred CcceEEEEcCCCC-eEeecc-----EEEEcCCCcceeeecc--CCCce-EEEEecCC-CEEEEEe-----EEEecCCCeE
Q 000177 1645 HAYSQIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQ--FTDHG-GGGFHPAG-NEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1645 h~~~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~g--h~~~V-sVaFSPdG-~~LASGS-----eIWDLrTgkl 1709 (1922)
..+..++|+|++. ++++++ ++||+++++++..+.. +...+ +++|+|++ .+|++|+ ++||++++++
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 3344599999985 566665 9999999988776543 44455 89999984 6788887 5999999999
Q ss_pred EEEEcCCCc--eeEEEccCC-CEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcC-
Q 000177 1710 LRSVPSLDQ--TTITFNARG-DVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATER- 1785 (1922)
Q Consensus 1710 L~tl~gH~~--~sVaFSPdG-~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SP- 1785 (1922)
++++.+|.. ++++|+|+| ++|++++. +..+++||..+.+.+........|.+++|+|
T Consensus 262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~-------------------D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~ 322 (357)
T 4g56_B 262 AQTSAVHSQNITGLAYSYHSSPFLASISE-------------------DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPL 322 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSCCEEEEET-------------------TSCEEEECTTSCEEEEECCCSSCEEEEEECSS
T ss_pred eEEEeccceeEEEEEEcCCCCCEEEEEeC-------------------CCEEEEEECCCCcEeEECCCCCCEEEEEEeCC
Confidence 999998876 899999998 56777742 2457788877777777666677899999999
Q ss_pred CCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1786 TDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1786 dds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
++.+|+... .|..|++|++...
T Consensus 323 d~~~l~s~s------~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 323 DHSKFTTVG------WDHKVLHHHLPSE 344 (357)
T ss_dssp STTEEEEEE------TTSCEEEEECC--
T ss_pred CCCEEEEEc------CCCeEEEEECCCC
Confidence 677877653 4578999998543
No 14
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.96 E-value=1.4e-27 Score=288.08 Aligned_cols=230 Identities=18% Similarity=0.326 Sum_probs=206.4
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
.|.+...+..+++++|. +.|++++|+|+|++|++|+.||+|+|||+.+++++.++.+|...|+++ .|+|++.+|+++
T Consensus 134 vwd~~~~~~~~~l~~h~-~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v--~~~p~~~~l~s~ 210 (410)
T 1vyh_C 134 VWDYETGDFERTLKGHT-DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV--SIMPNGDHIVSA 210 (410)
T ss_dssp EEETTTCCCCEEECCCS-SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEE--EECSSSSEEEEE
T ss_pred EEECCCCcEEEEEeccC-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEE--EEeCCCCEEEEE
Confidence 34456677788999999 999999999999999999999999999999999999999999999999 899999999885
Q ss_pred -cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
.|++|++||+.+ +.++.++.+| .++.|+|++++|+++ +.|++|++||+.++++...+. .+.+.
T Consensus 211 s~D~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~g~~l~s~---s~D~~v~vwd~~~~~~~~~~~-------~h~~~ 278 (410)
T 1vyh_C 211 SRDKTIKMWEVQT--GYCVKTFTGHREWVRMVRPNQDGTLIASC---SNDQTVRVWVVATKECKAELR-------EHRHV 278 (410)
T ss_dssp ETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCCEEEEEC-------CCSSC
T ss_pred eCCCeEEEEECCC--CcEEEEEeCCCccEEEEEECCCCCEEEEE---cCCCeEEEEECCCCceeeEec-------CCCce
Confidence 599999999998 7888888875 779999999999999 889999999999999888775 23445
Q ss_pred ceEEEEcCC--------------------CCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-
Q 000177 1647 YSQIHFSPS--------------------DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS- 1699 (1922)
Q Consensus 1647 ~~vVaFSPd--------------------G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS- 1699 (1922)
+..++|+|+ |.+|++++ ++||+++++++.++.+|...+ +++|+|+|++|++++
T Consensus 279 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 358 (410)
T 1vyh_C 279 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358 (410)
T ss_dssp EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET
T ss_pred EEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeC
Confidence 566999996 66788877 999999999999999999998 999999999999998
Q ss_pred ----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1700 ----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1700 ----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
++||+.+++++.++.+|.. ++++|+|++.+|++++.+
T Consensus 359 D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D 401 (410)
T 1vyh_C 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401 (410)
T ss_dssp TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETT
T ss_pred CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 5999999999999999876 899999999999998643
No 15
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.5e-26 Score=263.11 Aligned_cols=297 Identities=15% Similarity=0.130 Sum_probs=235.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
+.....|.+|. +.|++++|+|++++|++|+.||.|+|||+.+++.+.++.+|...|+++ .|+|++++|+++ .|++|
T Consensus 22 ~~~~~~l~~h~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 22 HMKAIKLTGHE-RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI--DVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp SEEEEEEECCS-SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTTEE
T ss_pred ccccEEEEEee-ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEE--EEcCCCCEEEEEeCCCeE
Confidence 33455688999 999999999999999999999999999999999999999999999999 889999999985 69999
Q ss_pred EEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCC-----CeEEEEECCCCceeeeecccc----ccccCCC
Q 000177 1577 HLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSD-----RGILLYDIQTYQLEAKLSDTS----VNLTGRG 1644 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~D-----gtIrIWDlrTgk~i~tL~d~s----~~~~~~g 1644 (1922)
++||+.+ ++++..+.. +.++.|+|++++|+++ +.+ +.|++||+.++.....+.... .....+.
T Consensus 99 ~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 99 KLWDVSN--GQCVATWKSPVPVKRVEFSPCGNYFLAI---LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEEETTT--CCEEEEEECSSCEEEEEECTTSSEEEEE---ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEEECCC--CcEEEEeecCCCeEEEEEccCCCEEEEe---cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 9999998 777776653 4889999999999998 566 999999998775433322100 0001111
Q ss_pred C--cceEEEEcCCCCeEeecc-----EEEEcCC-CcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1645 H--AYSQIHFSPSDTMLLWNG-----ILWDRRN-SVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1645 h--~~~vVaFSPdG~lLaSgg-----rLWDlrt-gk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
. ....++|+|++++|++++ ++||+++ ++.+..+..|...+ +++|+|++++|++++ .+||+++++.+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~ 253 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee
Confidence 2 455599999999999876 8999998 78899999999888 999999999999998 59999999999
Q ss_pred EEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCc
Q 000177 1711 RSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDS 1788 (1922)
Q Consensus 1711 ~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds 1788 (1922)
..+..... ..+.|+|++.+++++...+...++... .......+++|+..+...+..+.. ...|..++|+|++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 254 KKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTS-----ANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGT 328 (369)
T ss_dssp EEEECSSCEEEEEECSSSSEEEEEECCC------------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred eeecCCCCceeEEecCCCceEEEeecCCCceEEEEe-----cCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCC
Confidence 98884433 899999999999998655433322100 001123678899888888877764 56799999999999
Q ss_pred eEEEEecCCCCCccceEEEEEecCC
Q 000177 1789 FVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1789 ~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
++++.. .++.+++|++...
T Consensus 329 ~l~s~~------~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 329 SYASGG------EDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEEE------TTSEEEEEEECHH
T ss_pred EEEEEc------CCCeEEEEECccc
Confidence 988763 3478999998543
No 16
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=7.8e-27 Score=299.30 Aligned_cols=274 Identities=20% Similarity=0.221 Sum_probs=217.6
Q ss_pred eeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCC-----ceeeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSS-----PLESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk-----~l~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
+....+++|. +.|++|+|+|++ ++|+||+.|++|+|||+.+.. ....+.+|...|+++ +|+|++++|+++
T Consensus 373 ~~~~~l~~H~-~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v--~~s~~g~~l~sgs 449 (694)
T 3dm0_A 373 VLKGTMRAHT-DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV--VLSSDGQFALSGS 449 (694)
T ss_dssp EEEEEEECCS-SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEE--EECTTSSEEEEEE
T ss_pred chhhhcccCC-ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEE--EECCCCCEEEEEe
Confidence 4456789999 999999999864 799999999999999997643 356789999999999 899999999995
Q ss_pred cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA- 1646 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~- 1646 (1922)
.|++|+|||+.+ +.++..+.+| ++++|+|++++|+++ +.|++|++||+.......... ...+|.
T Consensus 450 ~Dg~v~vwd~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---s~D~~i~iwd~~~~~~~~~~~------~~~~h~~ 518 (694)
T 3dm0_A 450 WDGELRLWDLAA--GVSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWNTLGECKYTISE------GGEGHRD 518 (694)
T ss_dssp TTSEEEEEETTT--TEEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSCEEEECTTSCEEEEECS------STTSCSS
T ss_pred CCCcEEEEECCC--CcceeEEeCCCCCEEEEEEeCCCCEEEEE---eCCCEEEEEECCCCcceeecc------CCCCCCC
Confidence 599999999988 7778888776 789999999999999 889999999987544332221 112444
Q ss_pred -ceEEEEcCCC--CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE
Q 000177 1647 -YSQIHFSPSD--TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1647 -~~vVaFSPdG--~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t 1712 (1922)
+.+++|+|++ .++++++ ++||+++++++..+.+|...+ +++|+|+|++|++++ +|||+++++.+.+
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~ 598 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYS 598 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEEC
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 5559999987 5677776 999999999999999999999 999999999999998 5999999999988
Q ss_pred EcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-----------------
Q 000177 1713 VPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV----------------- 1774 (1922)
Q Consensus 1713 l~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv----------------- 1774 (1922)
+..+.. ++++|+|++.+++++.. + .+++||..+...+..+..
T Consensus 599 ~~~~~~v~~~~~sp~~~~l~~~~~-~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 599 LEANSVIHALCFSPNRYWLCAATE-H-------------------GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp CBCSSCEEEEEECSSSSEEEEEET-T-------------------EEEEEETTTTEEEEEECCCCC--------------
T ss_pred ecCCCcEEEEEEcCCCcEEEEEcC-C-------------------CEEEEECCCCCChhhhccccccccccccccccccC
Confidence 876554 89999999999988742 2 133344333333222211
Q ss_pred ---CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1775 ---DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1775 ---kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
...+..++|+|++.+|++.. .|+.|++|++++
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs------~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGY------TDGVIRVWGIGR 693 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEE------TTSEEEEEEC--
T ss_pred CceeEEeeeEEEcCCCCEEEEEc------CCCeEEEEeccC
Confidence 11367899999999998653 457899999875
No 17
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.96 E-value=1.5e-26 Score=276.75 Aligned_cols=266 Identities=16% Similarity=0.262 Sum_probs=218.1
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCC------------------CeeEEEeeecCCCcE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQA------------------PVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss------------------~VtsLq~afSpDG~l 1567 (1922)
+|. +.|+|++|+|||++|++|+ +++++||++.+++.+..+..|.. .|+++ +|+|++++
T Consensus 62 ~h~-~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v--~~s~dg~~ 137 (393)
T 1erj_A 62 DHT-SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV--CFSPDGKF 137 (393)
T ss_dssp ECS-SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEE--EECTTSSE
T ss_pred CCC-CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEE--EECCCCCE
Confidence 698 9999999999999999987 68999999999998888866542 48899 89999999
Q ss_pred EEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1568 LLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1568 LaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
|+++ .|++|+|||+.+ ++++..+.+| ++++|+|++++|+++ +.|++|++||++++++..++.
T Consensus 138 l~s~~~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~~~~l~s~---s~d~~v~iwd~~~~~~~~~~~-------- 204 (393)
T 1erj_A 138 LATGAEDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPSGDKLVSG---SGDRTVRIWDLRTGQCSLTLS-------- 204 (393)
T ss_dssp EEEEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTTEEEEEEE--------
T ss_pred EEEEcCCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCCCCEEEEe---cCCCcEEEEECCCCeeEEEEE--------
Confidence 9995 599999999987 7777888775 789999999999999 889999999999999887775
Q ss_pred CCCcceEEEEcC-CCCeEeecc-----EEEEcCCCcceeee-------ccCCCce-EEEEecCCCEEEEEe-----EEEe
Q 000177 1643 RGHAYSQIHFSP-SDTMLLWNG-----ILWDRRNSVPVHRF-------DQFTDHG-GGGFHPAGNEVIINS-----EVWD 1703 (1922)
Q Consensus 1643 ~gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtgk~I~kf-------~gh~~~V-sVaFSPdG~~LASGS-----eIWD 1703 (1922)
.......++|+| ++++|++++ ++||+++++.+..+ .+|...+ +++|+|+|++|++++ ++||
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 234455699999 889999877 89999999888777 5677788 999999999999998 5999
Q ss_pred cCCC------------eEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee
Q 000177 1704 LRKF------------RLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI 1769 (1922)
Q Consensus 1704 LrTg------------klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I 1769 (1922)
+++. .+..++.+|.. .+++|+|++.+|++++. +..+++||..+...+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-------------------D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-------------------DRGVLFWDKKSGNPL 345 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-------------------TSEEEEEETTTCCEE
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-------------------CCeEEEEECCCCeEE
Confidence 9763 45567778876 79999999999999853 345677887777777
Q ss_pred eeecc-CCceEEEEEcC------CCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1770 ATIPV-DRCVLDFATER------TDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1770 aTidv-kr~I~dLa~SP------dds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
.++.. ...|..++|++ ++.+++... .|..+++|++...
T Consensus 346 ~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs------~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 346 LMLQGHRNSVISVAVANGSSLGPEYNVFATGS------GDCKARIWKYKKI 390 (393)
T ss_dssp EEEECCSSCEEEEEECSSCTTCTTCEEEEEEE------TTSEEEEEEEEEC
T ss_pred EEECCCCCCEEEEEecCCcCcCCCCCEEEEEC------CCCcEEECccccc
Confidence 77765 45699999876 567777542 4578999998654
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.96 E-value=1.9e-26 Score=292.39 Aligned_cols=285 Identities=15% Similarity=0.214 Sum_probs=215.8
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
++.......++.+|. ..|++++|+|++. +|++|+.|++|++||..++++..++.+|...|+++ +|+|++++|+++
T Consensus 133 ~wd~~~~~~~l~gh~-~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v--~fspdg~~las~s 209 (611)
T 1nr0_A 133 LFDTGTSNGNLTGQA-RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSV--RYNPDGSLFASTG 209 (611)
T ss_dssp ETTTCCBCBCCCCCS-SCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEE--EECTTSSEEEEEE
T ss_pred EeeCCCCcceecCCC-CCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEE--EECCCCCEEEEEE
Confidence 344556677889999 9999999999987 69999999999999999999999999999999999 899999999995
Q ss_pred cCCcEEEeccCCCCCCcceEec-------cc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc---
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFE-------GC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS--- 1637 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~-------gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s--- 1637 (1922)
.|++|+|||+.+ ++++..+. +| ++++|+|++++|+++ +.|++|++||+.+++++.++....
T Consensus 210 ~D~~i~lwd~~~--g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~---s~D~~v~lWd~~~~~~~~~~~~~~~~~ 284 (611)
T 1nr0_A 210 GDGTIVLYNGVD--GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA---SADKTIKIWNVATLKVEKTIPVGTRIE 284 (611)
T ss_dssp TTSCEEEEETTT--CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred CCCcEEEEECCC--CcEeeeeccccccccccCCCEEEEEECCCCCEEEEE---eCCCeEEEEeCCCCceeeeecCCCCcc
Confidence 699999999987 67776663 44 789999999999999 889999999999998877664110
Q ss_pred -------------------------------ccccCCCCcc--eEEEEcCCCCeEeecc-----EEEEcCCCcceeee-c
Q 000177 1638 -------------------------------VNLTGRGHAY--SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRF-D 1678 (1922)
Q Consensus 1638 -------------------------------~~~~~~gh~~--~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf-~ 1678 (1922)
......+|.. ..++|+|+|++|++++ ++||+.++++...+ .
T Consensus 285 ~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~ 364 (611)
T 1nr0_A 285 DQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD 364 (611)
T ss_dssp GCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSC
T ss_pred ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeeccc
Confidence 0001124544 4499999999999887 99999877554332 1
Q ss_pred cC------------------------------------------------------------------------------
Q 000177 1679 QF------------------------------------------------------------------------------ 1680 (1922)
Q Consensus 1679 gh------------------------------------------------------------------------------ 1680 (1922)
+|
T Consensus 365 ~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~ 444 (611)
T 1nr0_A 365 VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE 444 (611)
T ss_dssp SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE
T ss_pred CCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceee
Confidence 11
Q ss_pred ---CCce-EEEEecCCCEEEEEe-----EEEecCCCeE--EEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcc
Q 000177 1681 ---TDHG-GGGFHPAGNEVIINS-----EVWDLRKFRL--LRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1681 ---~~~V-sVaFSPdG~~LASGS-----eIWDLrTgkl--L~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~ 1747 (1922)
...+ +++|+|+|++|++|+ ++||+.++.+ +.+ .+|.. ++++|||+|++|+++..+.
T Consensus 445 ~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~---------- 513 (611)
T 1nr0_A 445 VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSR---------- 513 (611)
T ss_dssp EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTS----------
T ss_pred eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCC----------
Confidence 1123 678888888888888 5888876643 233 45554 7888888888888875332
Q ss_pred cccccCCcceEEEEecCC-Cceeee--ec-cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1748 RRVKHPLFAAFRTVDAIN-YSDIAT--IP-VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1748 rr~ksp~~ssFrt~Da~d-ys~IaT--id-vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
.+++|+..+ ...+.+ .. ....|.+++|+|++++|+... .|..|++|++..
T Consensus 514 ---------~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs------~D~~v~lW~~~~ 567 (611)
T 1nr0_A 514 ---------KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS------LDNSVIVWNMNK 567 (611)
T ss_dssp ---------CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE------TTSCEEEEETTC
T ss_pred ---------CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEE------CCCcEEEEECCC
Confidence 345555444 333222 12 355799999999999999653 457899999743
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=276.02 Aligned_cols=265 Identities=14% Similarity=0.135 Sum_probs=202.7
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----------CCceeeeccCCCCeeEEEeeecCCCcEEEEecCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-----------SSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQ 1574 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-----------gk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDg 1574 (1922)
.|. ..|.+++|+|||++|++++ |+++++||... .........|...|+++ +|+|++.+++++.|+
T Consensus 28 ~~~-~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~d~~l~~~s~dg 103 (344)
T 4gqb_B 28 CME-RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADL--TWVGERGILVASDSG 103 (344)
T ss_dssp SCC-SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEE--EEETTTEEEEEETTS
T ss_pred ccc-CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEE--EEeCCCeEEEEECCC
Confidence 455 7799999999999999888 77888887321 11112223467889999 889998877778899
Q ss_pred cEEEeccCCCCCCcceEe----ccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1575 DVHLWNASSIAGGPMHSF----EGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf----~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
+|+|||+.+ ++++..+ .+| ++++|+|+|++|++| +.|++|++||+.+++++.++. +|.
T Consensus 104 ~v~lWd~~~--~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg---s~d~~i~iwd~~~~~~~~~~~---------~h~ 169 (344)
T 4gqb_B 104 AVELWELDE--NETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG---SKDICIKVWDLAQQVVLSSYR---------AHA 169 (344)
T ss_dssp EEEEEEECT--TSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTTEEEEEEC---------CCS
T ss_pred EEEEEeccC--CCceeEeeccccCCCCCEEEEEECCCCCEEEEE---eCCCeEEEEECCCCcEEEEEc---------CcC
Confidence 999999988 5555433 243 889999999999999 889999999999999998886 555
Q ss_pred c--eEEEEcCCCC-eEeecc-----EEEEcCCCcceeeeccC--CCce-EEEEecC-CCEEEEEe-----EEEecCCCeE
Q 000177 1647 Y--SQIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQF--TDHG-GGGFHPA-GNEVIINS-----EVWDLRKFRL 1709 (1922)
Q Consensus 1647 ~--~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~gh--~~~V-sVaFSPd-G~~LASGS-----eIWDLrTgkl 1709 (1922)
. ..++|+|++. ++++++ ++||+++++++..+..+ ...+ +++|+|+ +++|++|+ +|||++++++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC 249 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence 4 4599999985 667766 99999999998887543 3344 8999995 56888887 5999999999
Q ss_pred EEEEcCCCc--eeEEEccCC-CEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCC
Q 000177 1710 LRSVPSLDQ--TTITFNARG-DVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1710 L~tl~gH~~--~sVaFSPdG-~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPd 1786 (1922)
+.++.+|.. ++++|+|+| ++|++++. +..+++||..+.+.+........|.+++|+|+
T Consensus 250 ~~~~~~h~~~v~~v~fsp~g~~~lasgs~-------------------D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~ 310 (344)
T 4gqb_B 250 VLSSAVHSQCVTGLVFSPHSVPFLASLSE-------------------DCSLAVLDSSLSELFRSQAHRDFVRDATWSPL 310 (344)
T ss_dssp CEEEECCSSCEEEEEECSSSSCCEEEEET-------------------TSCEEEECTTCCEEEEECCCSSCEEEEEECSS
T ss_pred EEEEcCCCCCEEEEEEccCCCeEEEEEeC-------------------CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCC
Confidence 999999987 799999998 57787752 23467777766665544445667999999999
Q ss_pred CceEEEEecCCCCCccceEEEEEecC
Q 000177 1787 DSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1787 ds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+..+.+.. ..|..|++|.+..
T Consensus 311 ~~~llas~-----s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 311 NHSLLTTV-----GWDHQVVHHVVPT 331 (344)
T ss_dssp STTEEEEE-----ETTSCEEEEECCC
T ss_pred CCeEEEEE-----cCCCeEEEEECCC
Confidence 87654332 2357899998853
No 20
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.95 E-value=1.7e-26 Score=266.49 Aligned_cols=229 Identities=17% Similarity=0.305 Sum_probs=197.7
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
-|.+.....++++..|. ..|++++|+|++++|++|+.|++|+|||+.+++++..+.+|...|+++ +|+|++++|+++
T Consensus 39 lWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~sg 115 (304)
T 2ynn_A 39 LWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI--AVHPTKPYVLSG 115 (304)
T ss_dssp EEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSSSEEEEE
T ss_pred EEECCCCceeEEeeccC-CcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEE--EEcCCCCEEEEE
Confidence 34456677888999999 999999999999999999999999999999999999999999999999 899999999995
Q ss_pred -cCCcEEEeccCCCCC-CcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1572 -SSQDVHLWNASSIAG-GPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~g-k~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
.|++|++||+.+ + .+...+.+| .+++|+| ++.+|++| +.|++|++||++++.....+. ..+.
T Consensus 116 s~D~~v~lWd~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg---s~D~~v~iwd~~~~~~~~~~~------~~~~ 184 (304)
T 2ynn_A 116 SDDLTVKLWNWEN--NWALEQTFEGHEHFVMCVAFNPKDPSTFASG---CLDRTVKVWSLGQSTPNFTLT------TGQE 184 (304)
T ss_dssp ETTSCEEEEEGGG--TTEEEEEECCCCSCEEEEEECTTCTTEEEEE---ETTSEEEEEETTCSSCSEEEE------CCCT
T ss_pred CCCCeEEEEECCC--CcchhhhhcccCCcEEEEEECCCCCCEEEEE---eCCCeEEEEECCCCCccceec------cCCc
Confidence 599999999987 4 344567665 7899999 67899999 889999999999887766654 1123
Q ss_pred CcceEEEEcC--CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1645 HAYSQIHFSP--SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1645 h~~~vVaFSP--dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
.....+.|+| ++.+|++++ ++||+++++++.++.+|...+ +++|+|++.+|++++ +|||+.++++++
T Consensus 185 ~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~ 264 (304)
T 2ynn_A 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264 (304)
T ss_dssp TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence 3455588876 778999887 999999999999999999999 899999999999999 699999999999
Q ss_pred EEcCCCc--eeEEEccCCC--EEEEEE
Q 000177 1712 SVPSLDQ--TTITFNARGD--VIYAIL 1734 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~--~LaSgs 1734 (1922)
++..|.. ++++|+|+|. ++++++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~asg~ 291 (304)
T 2ynn_A 265 TLNVGLERSWCIATHPTGRKNYIASGF 291 (304)
T ss_dssp EECCSSSSEEEEEECTTCGGGCEEEEE
T ss_pred eccCCCccEEEEEECCCCCceEEEEec
Confidence 9998765 7999999885 566664
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.95 E-value=1.3e-25 Score=284.65 Aligned_cols=274 Identities=11% Similarity=0.244 Sum_probs=219.3
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEec
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSSS 1572 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSSs 1572 (1922)
........+|.+|. +.|++++|+|+|++||+|+.||+|+|||+.+++ ...++.+|..+|+++ +|+|++++|++++
T Consensus 46 ~~~~~~~~~~~~h~-~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v--~fs~dg~~l~~~~ 122 (611)
T 1nr0_A 46 VGSLTDTEIYTEHS-HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI--SWDSESKRIAAVG 122 (611)
T ss_dssp TTCSSCCEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEE--EECTTSCEEEEEE
T ss_pred CCCcccCeEecCCC-CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEE--EECCCCCEEEEEE
Confidence 34566788899999 999999999999999999999999999997654 345788999999999 8999999998853
Q ss_pred -C----CcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1573 -S----QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1573 -D----gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
+ ++|++||. +.++.++.+| ++++|+|++. .|+++ +.|++|++||..++++..++.
T Consensus 123 ~~~~~~~~v~~wd~----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~---s~D~~v~lwd~~~~~~~~~l~-------- 187 (611)
T 1nr0_A 123 EGRERFGHVFLFDT----GTSNGNLTGQARAMNSVDFKPSRPFRIISG---SDDNTVAIFEGPPFKFKSTFG-------- 187 (611)
T ss_dssp CCSSCSEEEEETTT----CCBCBCCCCCSSCEEEEEECSSSSCEEEEE---ETTSCEEEEETTTBEEEEEEC--------
T ss_pred CCCCceeEEEEeeC----CCCcceecCCCCCceEEEECCCCCeEEEEE---eCCCeEEEEECCCCeEeeeec--------
Confidence 3 47889985 3456667665 7899999986 58998 889999999999998888775
Q ss_pred CCCcc--eEEEEcCCCCeEeecc-----EEEEcCCCcceeeec-------cCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1643 RGHAY--SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD-------QFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1643 ~gh~~--~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~-------gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
+|.. ..++|+|+|++|++++ ++||+.+++++..+. +|...+ +++|+|+|++|++++ +||
T Consensus 188 -~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW 266 (611)
T 1nr0_A 188 -EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 266 (611)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred -cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 5554 4599999999999887 999999999988884 788888 999999999999999 699
Q ss_pred ecCCCeEEEEE-------------------------------------------cCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1703 DLRKFRLLRSV-------------------------------------------PSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1703 DLrTgklL~tl-------------------------------------------~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
|+.+++++.++ .+|.. ++++|+|+|++|+++..+
T Consensus 267 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D- 345 (611)
T 1nr0_A 267 NVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE- 345 (611)
T ss_dssp ETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT-
T ss_pred eCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC-
Confidence 99988776554 35554 789999999999998532
Q ss_pred chhhhhhhcccccccCCcceEEEEecCCCceeeee--ccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1738 LEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI--PVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1738 ~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi--dvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
..+++||..+....... .....|..+++++++.. +.+. .+..+++|+++..
T Consensus 346 ------------------~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l-~s~s------~d~~v~~w~~~~~ 398 (611)
T 1nr0_A 346 ------------------GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVS------WDDHLKVVPAGGS 398 (611)
T ss_dssp ------------------SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEE------TTTEEEEECSSSS
T ss_pred ------------------CcEEEEECCCCceeeecccCCcceEEEEEECCCCcE-EEEE------cCCceEEeecCCc
Confidence 34566776655444333 12456999999987654 4332 3467999987543
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.6e-26 Score=264.52 Aligned_cols=274 Identities=12% Similarity=0.184 Sum_probs=203.7
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeee-cc-CCCCeeEEEeeecCCCcEEEEe-
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESC-TS-HQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL-~g-Hss~VtsLq~afSpDG~lLaSS- 1571 (1922)
.++.+++|++|. +.|++++|+|+ +|++|+.|++|+|||+.++. ....+ .+ |...|+++ +|+|++++|+++
T Consensus 3 ~~~~~~~~~~h~-~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v--~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK-EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV--AWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS-SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEE--EECTTSSEEEEEE
T ss_pred ccccceeeccCC-CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEE--EECCCCCEEEEEe
Confidence 356678899999 99999999987 99999999999999998753 44555 44 99999999 899999999995
Q ss_pred cCCcEEEeccCCC-----CCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC----ceeeeeccccc
Q 000177 1572 SSQDVHLWNASSI-----AGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTY----QLEAKLSDTSV 1638 (1922)
Q Consensus 1572 sDgtVkLWDl~t~-----~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg----k~i~tL~d~s~ 1638 (1922)
.|++|+|||+... ...++..+.+| ++++|+|++++|+++ +.|++|++||++.. +++..+.
T Consensus 78 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~---s~D~~v~iwd~~~~~~~~~~~~~~~---- 150 (330)
T 2hes_X 78 FDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC---SRDKSVWIWETDESGEEYECISVLQ---- 150 (330)
T ss_dssp TTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE---ETTSCEEEEECCTTCCCCEEEEEEC----
T ss_pred CCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE---eCCCEEEEEeccCCCCCeEEEEEec----
Confidence 5999999998531 12345666665 789999999999999 88999999999532 3444443
Q ss_pred cccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCC--cceeeeccCCCce-EEEEecC--CCEEEEEe-----EEEe
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNS--VPVHRFDQFTDHG-GGGFHPA--GNEVIINS-----EVWD 1703 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtg--k~I~kf~gh~~~V-sVaFSPd--G~~LASGS-----eIWD 1703 (1922)
.+...+..++|+|++.+|++++ ++||+.++ +++..+.+|...+ ++.|+|+ +.+|++++ +|||
T Consensus 151 ---~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 151 ---EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp ---CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEE
T ss_pred ---cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEE
Confidence 1223345599999999999887 89999877 6888999999999 9999999 77899998 6999
Q ss_pred cCCC--------eEEEEEcC-CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCC--ceee
Q 000177 1704 LRKF--------RLLRSVPS-LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINY--SDIA 1770 (1922)
Q Consensus 1704 LrTg--------klL~tl~g-H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dy--s~Ia 1770 (1922)
++++ .++..+.+ |.. ++++|++++ +|+++..+. .+++|+..+. ..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg-------------------~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADG-------------------VLAVYEEVDGEWKVFA 287 (330)
T ss_dssp EEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTS-------------------CEEEEEEETTEEEEEE
T ss_pred ecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCC-------------------EEEEEEcCCCceEEEe
Confidence 9764 45566665 554 799999776 667764322 3455554332 2222
Q ss_pred ee-c-cCC-ceEEEEEcC--CCceEEEEecCCCCCccceEEEEEec
Q 000177 1771 TI-P-VDR-CVLDFATER--TDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1771 Ti-d-vkr-~I~dLa~SP--dds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.. . ... .|..++|+| ++.+|+... .|+.+++|++.
T Consensus 288 ~~~~~h~~~~v~~v~~~~~~~~~~las~s------~Dg~v~~W~~~ 327 (330)
T 2hes_X 288 KRALCHGVYEINVVKWLELNGKTILATGG------DDGIVNFWSLE 327 (330)
T ss_dssp EESCTTTTSCEEEEEEC-----CCEEEEE------TTSEEEEEEC-
T ss_pred ccccccccceEEEEEEecCCCceEEEEec------CCCcEEEEEec
Confidence 22 1 222 699999999 577777553 45789999874
No 23
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.95 E-value=7.8e-26 Score=265.12 Aligned_cols=229 Identities=14% Similarity=0.212 Sum_probs=197.9
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
|.....+.+.++..|. ..|.+++|+|+|++|++|+.|+.|+||++.++. ....+.+|...|.++ .|++++.++
T Consensus 82 Wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~l~ 158 (340)
T 1got_B 82 WDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC--RFLDDNQIV 158 (340)
T ss_dssp EETTTCCEEEEEECSS-SCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEE--EEEETTEEE
T ss_pred EECCCCCcceEeecCC-ccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEE--EECCCCcEE
Confidence 3345677788899999 999999999999999999999999999998763 455678999999999 788888877
Q ss_pred EEecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1569 LSSSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1569 aSSsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+++.|++|++||+.+ ++++.++.+| ++++|+|++++|++| +.|++|++||++++.++.++. .+.
T Consensus 159 s~s~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~sg---~~d~~v~~wd~~~~~~~~~~~-------~h~ 226 (340)
T 1got_B 159 TSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTRLFVSG---ACDASAKLWDVREGMCRQTFT-------GHE 226 (340)
T ss_dssp EEETTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCSEEEEEC-------CCS
T ss_pred EEECCCcEEEEECCC--CcEEEEEcCCCCceEEEEECCCCCEEEEE---eCCCcEEEEECCCCeeEEEEc-------CCc
Confidence 668899999999998 7788888775 789999999999999 889999999999999988875 123
Q ss_pred CcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC--Cce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1645 HAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--DHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
..+..++|+|++++|++++ ++||+++++.+..+.... ..+ +++|+|+|++|++|+ ++||+.+++.+.
T Consensus 227 ~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~ 306 (340)
T 1got_B 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEee
Confidence 3455599999999999887 999999998887775332 345 899999999999998 599999999999
Q ss_pred EEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
++.+|.. ++++|+|+|.+|++++.+
T Consensus 307 ~~~~h~~~v~~~~~s~dg~~l~s~s~D 333 (340)
T 1got_B 307 VLAGHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EeecCCCcEEEEEEcCCCCEEEEEcCC
Confidence 9999987 799999999999999643
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=6.2e-25 Score=250.02 Aligned_cols=265 Identities=16% Similarity=0.223 Sum_probs=216.1
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce---eeec--cCCCCeeEEEeeecCCCcEEEEe-cCCcEEE
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL---ESCT--SHQAPVTLVQSHLSGETQLLLSS-SSQDVHL 1578 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l---~tL~--gHss~VtsLq~afSpDG~lLaSS-sDgtVkL 1578 (1922)
.+|. +.|++++|+|++++|++|+ ||.|+|||+.+++.. ..+. +|...|+++ .|+|++++|+++ .|+.|++
T Consensus 48 ~~h~-~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~d~~i~~ 123 (337)
T 1gxr_A 48 LNHG-EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC--KLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp ECCS-SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEE--EECTTSSEEEEEESSSEEEE
T ss_pred ccCC-CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEE--EEcCCCCEEEEEcCCCcEEE
Confidence 4798 9999999999999999999 999999999877643 3333 799999999 889999988885 5999999
Q ss_pred eccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1579 WNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
||+.+........+..| .+++|+|++++|+++ +.|+.|++||+++++.+..+. .+......++|+|
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~v~~~d~~~~~~~~~~~-------~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC---CSDGNIAVWDLHNQTLVRQFQ-------GHTDGASCIDISN 193 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECT
T ss_pred EECCCCCcceeeecccCCCceEEEEECCCCCEEEEE---eCCCcEEEEeCCCCceeeeee-------cccCceEEEEECC
Confidence 99987221244555443 789999999999998 788999999999998888775 1233445599999
Q ss_pred CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeE
Q 000177 1655 SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTI 1721 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sV 1721 (1922)
+++++++++ ++||+++++.+..+. +...+ +++|+|+|++|++++ .+||+++++.. .+..|.. +++
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~ 271 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL 271 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE
T ss_pred CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE
Confidence 999999876 899999999888875 44455 999999999999998 59999988764 5666665 799
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCc
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDM 1801 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~ 1801 (1922)
+|+|+|++|+++.. +..+++|+..+...+........|..++|+|++.++++.. .
T Consensus 272 ~~~~~~~~l~~~~~-------------------dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~ 326 (337)
T 1gxr_A 272 KFAYCGKWFVSTGK-------------------DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGS------G 326 (337)
T ss_dssp EECTTSSEEEEEET-------------------TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE------T
T ss_pred EECCCCCEEEEecC-------------------CCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEec------C
Confidence 99999999998852 2356777877777776666778899999999999988764 2
Q ss_pred cceEEEEEe
Q 000177 1802 FSSARIYEI 1810 (1922)
Q Consensus 1802 dSsVRLyEV 1810 (1922)
++.+++|++
T Consensus 327 dg~i~iw~~ 335 (337)
T 1gxr_A 327 DKKATVYEV 335 (337)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 467899986
No 25
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.95 E-value=1.4e-25 Score=260.93 Aligned_cols=224 Identities=16% Similarity=0.323 Sum_probs=191.6
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
..++++|++|. ..|++++|+|+|++|++|+.|++|+|||+.+++.+..+.+|...|+++ .|+|++.+|+++ .|++|
T Consensus 55 ~~~~~~~~~h~-~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~s~D~~i 131 (319)
T 3frx_A 55 GVPVRSFKGHS-HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSV--DIDKKASMIISGSRDKTI 131 (319)
T ss_dssp EEEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EECTTSCEEEEEETTSCE
T ss_pred cccceEEeCCc-ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEE--EEcCCCCEEEEEeCCCeE
Confidence 35678899999 999999999999999999999999999999999999999999999999 889999999995 59999
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCC------CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNS------GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPD------G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++||++ +.++.++.+| .++.|+|. +.+|+++ +.|++|++||+++++....+. ++...
T Consensus 132 ~vwd~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~---~~d~~i~~wd~~~~~~~~~~~-------~h~~~ 198 (319)
T 3frx_A 132 KVWTIK---GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA---GNDKMVKAWNLNQFQIEADFI-------GHNSN 198 (319)
T ss_dssp EEEETT---SCEEEEECCCSSCEEEEEECCC------CCEEEEE---ETTSCEEEEETTTTEEEEEEC-------CCCSC
T ss_pred EEEECC---CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE---eCCCEEEEEECCcchhheeec-------CCCCc
Confidence 999997 4567777765 67899885 4489998 889999999999988877775 12334
Q ss_pred ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcCC-
Q 000177 1647 YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSL- 1716 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH- 1716 (1922)
+..++|+|+|++|++++ ++||+++++++..+..+....+++|+|++.+|++++ ++|++.+...+..+..+
T Consensus 199 v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~ 278 (319)
T 3frx_A 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEF 278 (319)
T ss_dssp EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccc
Confidence 44599999999999887 999999999999998765444999999999999987 69999988888777532
Q ss_pred -------C--ceeEEEccCCCEEEEEEccC
Q 000177 1717 -------D--QTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1717 -------~--~~sVaFSPdG~~LaSgs~~d 1737 (1922)
. ..+++|+|+|++|+++..+.
T Consensus 279 ~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg 308 (319)
T 3frx_A 279 AGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308 (319)
T ss_dssp TTCCGGGCCCEEEEEECTTSSEEEEEETTS
T ss_pred cccccCcCcceeEEEECCCCCEEEEeecCc
Confidence 1 16899999999999996433
No 26
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=3.5e-25 Score=260.04 Aligned_cols=277 Identities=13% Similarity=0.122 Sum_probs=222.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC------ceeeeccCCCCeeEEEeeecCC----C---
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS------PLESCTSHQAPVTLVQSHLSGE----T--- 1565 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk------~l~tL~gHss~VtsLq~afSpD----G--- 1565 (1922)
...+++++|. +.|++++|+| ++|++|+.||+|+|||+.+++ .+..+.+|..+|+++ .|+|+ +
T Consensus 7 ~~~~~~~~h~-~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~g~~~ 81 (397)
T 1sq9_A 7 ATANAGKAHD-ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV--DVLQAIERDAFEL 81 (397)
T ss_dssp EEEEESSCSS-SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEE--EEEEEEETTTEEE
T ss_pred hhhhhhhhhh-cCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEE--EEecccccCCccc
Confidence 3456788999 9999999998 899999999999999999988 788899999999999 78888 8
Q ss_pred cEEEEe-cCCcEEEeccCCCCCCc-----ceEecc---------ceeEEEc----CCCCE-EEEeecCCCCCeEEEEECC
Q 000177 1566 QLLLSS-SSQDVHLWNASSIAGGP-----MHSFEG---------CKAARFS----NSGNL-FAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1566 ~lLaSS-sDgtVkLWDl~t~~gk~-----l~tf~g---------h~sVaFS----PDG~~-LaSgS~~S~DgtIrIWDlr 1625 (1922)
++|+++ .|+.|++||+.+ +.. +..+.. +.+++|+ |++++ |+++ +.|+.|++||+.
T Consensus 82 ~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~ 156 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITR--EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT---DVKGTTYIWKFH 156 (397)
T ss_dssp EEEEEEETTSCEEEEEEEE--CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE---ETTSCEEEEEEE
T ss_pred cEEEEEcCCCCEEEEEccC--CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE---eCCCcEEEEeCC
Confidence 888884 699999999987 554 555543 4789999 99999 9998 789999999999
Q ss_pred C------Cceee-----eeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc---C---CCc
Q 000177 1626 T------YQLEA-----KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ---F---TDH 1683 (1922)
Q Consensus 1626 T------gk~i~-----tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g---h---~~~ 1683 (1922)
+ ++.+. .+.........+......++|+|++ ++++++ ++||+++++++..+.. | ...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 157 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp SSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred ccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 8 66655 4420000001134455669999999 888776 8999999999999998 8 777
Q ss_pred e-EEEEecCCCEEEEEe--------EEEecCCCeEEEEEcC-------------CCc--eeEEEccCCCEEEEEEccCch
Q 000177 1684 G-GGGFHPAGNEVIINS--------EVWDLRKFRLLRSVPS-------------LDQ--TTITFNARGDVIYAILRRNLE 1739 (1922)
Q Consensus 1684 V-sVaFSPdG~~LASGS--------eIWDLrTgklL~tl~g-------------H~~--~sVaFSPdG~~LaSgs~~d~~ 1739 (1922)
+ +++|+|++++|++++ .+||+++++.+..+.+ |.. ++++|+|+|++|+++..
T Consensus 236 i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 311 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW---- 311 (397)
T ss_dssp EEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET----
T ss_pred cceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC----
Confidence 7 999999999999875 3999999999999987 666 79999999999999853
Q ss_pred hhhhhhcccccccCCcceEEEEecCCCceeeeec------c----------------CCceEEEEEcCCC----------
Q 000177 1740 DVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP------V----------------DRCVLDFATERTD---------- 1787 (1922)
Q Consensus 1740 dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid------v----------------kr~I~dLa~SPdd---------- 1787 (1922)
+..+++|+..+...+.++. . ...|..++|+|++
T Consensus 312 ---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~ 376 (397)
T 1sq9_A 312 ---------------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 376 (397)
T ss_dssp ---------------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred ---------------CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence 2346777777777777776 3 5679999999998
Q ss_pred ceEEEEecCCCCCccceEEEEEec
Q 000177 1788 SFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1788 s~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.++++.. .++.+++|++.
T Consensus 377 ~~l~s~~------~dg~i~iw~~~ 394 (397)
T 1sq9_A 377 ESLCCVC------LDRSIRWFREA 394 (397)
T ss_dssp CEEEEEE------TTTEEEEEEEE
T ss_pred ceEEEec------CCCcEEEEEcC
Confidence 5776553 35789999874
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.95 E-value=5e-25 Score=272.58 Aligned_cols=267 Identities=21% Similarity=0.350 Sum_probs=222.4
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgt 1575 (1922)
..+.++++.+|. ..|++++|+|++++|++++.|++|++||.. +..+..+.+|...|+++ +|+|++++|+++ .|++
T Consensus 292 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~--~~s~~g~~l~~~~~dg~ 367 (577)
T 2ymu_A 292 NGQLLQTLTGHS-SSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGV--AFSPDGQTIASASDDKT 367 (577)
T ss_dssp TSCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSE
T ss_pred CCcEEEEEecCC-CCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEE--EECCCCCEEEEEeCCCE
Confidence 456678889999 999999999999999999999999999975 55677889999999999 899999999995 5999
Q ss_pred EEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|++||.. ++.+.++.+| ++++|+|++++|+++ +.|+.|++||. +++.+.++. .+...+..++
T Consensus 368 v~~~~~~---~~~~~~~~~~~~~v~~~~~s~dg~~l~~~---~~d~~v~~~~~-~~~~~~~~~-------~~~~~v~~~~ 433 (577)
T 2ymu_A 368 VKLWNRN---GQLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWNR-NGQLLQTLT-------GHSSSVWGVA 433 (577)
T ss_dssp EEEEETT---CCEEEEEECCSSCEEEEEECTTSSCEEEE---ETTSEEEEECT-TCCEEEEEE-------CCSSCEEEEE
T ss_pred EEEEcCC---CCEEEEecCCCCCeEEEEECCCCCEEEEE---eCCCEEEEEeC-CCCEEEEec-------CCCCCeEEEE
Confidence 9999964 5677777764 789999999999999 88999999995 566666665 1223344499
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-- 1718 (1922)
|+|++++|++++ ++||. +++.+..+.+|...+ +++|+|+|++|++++ +|||. ++++++++.+|..
T Consensus 434 ~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v 511 (577)
T 2ymu_A 434 FSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCE
Confidence 999999999877 89995 677889999999998 999999999999998 59995 6899999999976
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCC
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
++++|+|+|++|+++..+ ..+++||. +...+.++.. ...|..++|+|++++|+...
T Consensus 512 ~~l~~s~dg~~l~s~~~d-------------------g~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~--- 568 (577)
T 2ymu_A 512 RGVAFSPDGQTIASASDD-------------------KTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--- 568 (577)
T ss_dssp EEEEECTTSSCEEEEETT-------------------SEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE---
T ss_pred EEEEEcCCCCEEEEEECc-------------------CEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe---
Confidence 899999999999998532 34566663 4455555554 56799999999999988653
Q ss_pred CCCccceEEEEE
Q 000177 1798 QEDMFSSARIYE 1809 (1922)
Q Consensus 1798 s~d~dSsVRLyE 1809 (1922)
.|..+++|+
T Consensus 569 ---~D~~i~~Wd 577 (577)
T 2ymu_A 569 ---SDKTVKLWN 577 (577)
T ss_dssp ---TTSCEEEEC
T ss_pred ---CCCEEEEeC
Confidence 346799995
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.94 E-value=6.1e-26 Score=269.37 Aligned_cols=214 Identities=15% Similarity=0.228 Sum_probs=178.3
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee----ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC----TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL----~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
.|. ..|++++|+|++ .|++|+.||+|+|||+.+++.+..+ .+|...|++| +|+|++++|+++ .|++|+|||
T Consensus 80 ~~~-~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v--~~spdg~~l~sgs~d~~i~iwd 155 (344)
T 4gqb_B 80 QTE-AGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTV--SVLSSGTQAVSGSKDICIKVWD 155 (344)
T ss_dssp EES-SCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEE--EECTTSSEEEEEETTSCEEEEE
T ss_pred ccC-CCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEE--EECCCCCEEEEEeCCCeEEEEE
Confidence 455 789999999985 6889999999999999998876543 5899999999 899999999995 599999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
+.+ ++++.++.+| ++++|+|++. +|+++ +.|++|++||+++++....+.. ..+++....++|+|+
T Consensus 156 ~~~--~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~---s~D~~v~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~p~ 225 (344)
T 4gqb_B 156 LAQ--QVVLSSYRAHAAQVTCVAASPHKDSVFLSC---SEDNRILLWDTRCPKPASQIGC-----SAPGYLPTSLAWHPQ 225 (344)
T ss_dssp TTT--TEEEEEECCCSSCEEEEEECSSCTTEEEEE---ETTSCEEEEETTSSSCEEECC---------CCCEEEEEECSS
T ss_pred CCC--CcEEEEEcCcCCceEEEEecCCCCCceeee---ccccccccccccccceeeeeec-----ceeeccceeeeecCC
Confidence 998 8888999876 7899999875 67888 8899999999999998887641 123455667999996
Q ss_pred C-CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCC-CEEEEEe-----EEEecCCCeEEEEEcCCCc--ee
Q 000177 1656 D-TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAG-NEVIINS-----EVWDLRKFRLLRSVPSLDQ--TT 1720 (1922)
Q Consensus 1656 G-~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG-~~LASGS-----eIWDLrTgklL~tl~gH~~--~s 1720 (1922)
+ ++|++++ ++||++++++++++.+|...| +++|+|+| ++|++++ +|||+++++++ .+.+|.. ++
T Consensus 226 ~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~ 304 (344)
T 4gqb_B 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRD 304 (344)
T ss_dssp CTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEE
T ss_pred CCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEE
Confidence 5 5677665 899999999999999999999 99999998 5788988 69999998876 4678876 89
Q ss_pred EEEccCCCE-EEEEE
Q 000177 1721 ITFNARGDV-IYAIL 1734 (1922)
Q Consensus 1721 VaFSPdG~~-LaSgs 1734 (1922)
++|+|+|.. |++++
T Consensus 305 v~~sp~~~~llas~s 319 (344)
T 4gqb_B 305 ATWSPLNHSLLTTVG 319 (344)
T ss_dssp EEECSSSTTEEEEEE
T ss_pred EEEeCCCCeEEEEEc
Confidence 999999975 45554
No 29
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=1.2e-25 Score=272.17 Aligned_cols=281 Identities=10% Similarity=0.094 Sum_probs=212.1
Q ss_pred eEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCce--eeeccCCCCeeEEEeeecC-CCcEEEEe-cCCc
Q 000177 1501 WRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPL--ESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQD 1575 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l--~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgt 1575 (1922)
.+...+|. ..|+||+|+| ++++||+|+.||+|+|||+.+++.. ..+.+|.+.|++| .|+| ++.+|+++ .|++
T Consensus 112 ~~~~~~~~-~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l--~f~p~~~~~l~s~s~D~~ 188 (435)
T 4e54_B 112 LQKAAPFD-RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGL--KFNPLNTNQFYASSMEGT 188 (435)
T ss_dssp CCEEEECS-SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEE--EECSSCTTEEEEECSSSC
T ss_pred cccCCCCC-CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEE--EEeCCCCCEEEEEeCCCE
Confidence 44556788 8999999999 6779999999999999999877654 4457899999999 8897 67888885 5999
Q ss_pred EEEeccCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcce
Q 000177 1576 VHLWNASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
|+|||++. . ....+.. +.+++|+|++++|++| +.|+.|++||++. +.+.++. .+...+.
T Consensus 189 v~iwd~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g---~~dg~i~~wd~~~-~~~~~~~-------~h~~~v~ 254 (435)
T 4e54_B 189 TRLQDFKG--N-ILRVFASSDTINIWFCSLDVSASSRMVVTG---DNVGNVILLNMDG-KELWNLR-------MHKKKVT 254 (435)
T ss_dssp EEEEETTS--C-EEEEEECCSSCSCCCCCEEEETTTTEEEEE---CSSSBEEEEESSS-CBCCCSB-------CCSSCEE
T ss_pred EEEeeccC--C-ceeEEeccCCCCccEEEEEECCCCCEEEEE---eCCCcEeeeccCc-ceeEEEe-------cccceEE
Confidence 99999975 3 3333322 2679999999999999 8899999999974 4444443 1223344
Q ss_pred EEEEcCCCC-eEeecc-----EEEEcCCCcceeee---ccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE
Q 000177 1649 QIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRF---DQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV 1713 (1922)
Q Consensus 1649 vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf---~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl 1713 (1922)
.++|+|++. ++++++ ++||+++++....+ .+|...| +++|+|+|.+|++++ +|||++++.....+
T Consensus 255 ~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 255 HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred eeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 599999987 555655 89999987654443 5688888 999999999999999 59999999988888
Q ss_pred cCCCc--------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc--CCceEEE-E
Q 000177 1714 PSLDQ--------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDF-A 1782 (1922)
Q Consensus 1714 ~gH~~--------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dL-a 1782 (1922)
..|.. ..+.|+|++.+++++...+.....+ ...-...+++|+..+...+..+.. ...|..+ +
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~ 407 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSC-------TPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNE 407 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCS-------STTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEE
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEE-------EecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEE
Confidence 76653 3678999999999885433222211 111234688999888887777643 3457776 6
Q ss_pred EcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1783 TERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1783 ~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
|+|++.+|+... +..|+||++..
T Consensus 408 fspdg~~lasg~-------d~~i~iW~~~~ 430 (435)
T 4e54_B 408 FNPMGDTLASAM-------GYHILIWSQQE 430 (435)
T ss_dssp ECTTSSCEEEEC-------SSEEEECCCC-
T ss_pred ECCCCCEEEEEc-------CCcEEEEECCc
Confidence 999999988531 24699998643
No 30
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=7.4e-25 Score=258.01 Aligned_cols=281 Identities=14% Similarity=0.105 Sum_probs=225.9
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceeeec--cCCCCeeEEEeeecC-CCcEEEEe
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDS-SHIAVGSHTKELKIFDSNSSSPLESCT--SHQAPVTLVQSHLSG-ETQLLLSS 1571 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk~l~tL~--gHss~VtsLq~afSp-DG~lLaSS 1571 (1922)
..++..+++.+|. +.|++++|+|++ ++|++|+.||+|+|||+.+++....+. +|...|+++ .|+| ++++|+++
T Consensus 61 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 61 KSYKLHRTASPFD-RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGM--KFNQFNTNQLFVS 137 (383)
T ss_dssp TTCEEEEEECCCS-SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEE--EEETTEEEEEEEE
T ss_pred cccceEEeccCCC-CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEE--EeCCCCCCEEEEE
Confidence 4566677889999 999999999999 999999999999999999988877774 799999999 8899 67888885
Q ss_pred -cCCcEEEeccCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
.|++|++||+.. ..+..+.. +.+++|+|++++|+++ +.|+.|++||+ +++.+.++. .+
T Consensus 138 ~~d~~i~iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~i~d~-~~~~~~~~~-------~h 203 (383)
T 3ei3_B 138 SIRGATTLRDFSG---SVIQVFAKTDSWDYWYCCVDVSVSRQMLATG---DSTGRLLLLGL-DGHEIFKEK-------LH 203 (383)
T ss_dssp ETTTEEEEEETTS---CEEEEEECCCCSSCCEEEEEEETTTTEEEEE---ETTSEEEEEET-TSCEEEEEE-------CS
T ss_pred eCCCEEEEEECCC---CceEEEeccCCCCCCeEEEEECCCCCEEEEE---CCCCCEEEEEC-CCCEEEEec-------cC
Confidence 699999999985 44444432 4789999999999999 88999999999 467777765 12
Q ss_pred CCcceEEEEcCCCC-eEeecc-----EEEEcCC----CcceeeeccCCCce-EEEEec-CCCEEEEEe-----EEEecCC
Q 000177 1644 GHAYSQIHFSPSDT-MLLWNG-----ILWDRRN----SVPVHRFDQFTDHG-GGGFHP-AGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~-lLaSgg-----rLWDlrt----gk~I~kf~gh~~~V-sVaFSP-dG~~LASGS-----eIWDLrT 1706 (1922)
...+..++|+|+++ ++++++ ++||+++ +.++..+ +|...+ +++|+| +|.+|++++ ++||+++
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 33445599999999 788776 9999998 5566666 677788 999999 999999998 5999999
Q ss_pred CeEEEEEcCCCc--------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc---C
Q 000177 1707 FRLLRSVPSLDQ--------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV---D 1775 (1922)
Q Consensus 1707 gklL~tl~gH~~--------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv---k 1775 (1922)
++.+.++.+|.. ..+.|+|++.+++.++..+..- ....+..+++||..+...+.++.. .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~----------s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL----------LLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT----------CTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCccc----------ccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 888777775542 3568999999998775433211 122567899999988888888864 3
Q ss_pred CceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1776 RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1776 r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+..++|+|++.+|+... ++.+++|++.
T Consensus 353 ~~~~~~~~s~~g~~l~s~s-------d~~i~iw~~~ 381 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASGM-------GFNILIWNRE 381 (383)
T ss_dssp SCCCEEEECTTSSEEEEEE-------TTEEEEEECC
T ss_pred ceEEEEEEecCccEEEEec-------CCcEEEEecC
Confidence 4466779999999988652 3679999874
No 31
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=3.2e-25 Score=264.52 Aligned_cols=278 Identities=14% Similarity=0.252 Sum_probs=196.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-----------ceeeeccCC------------CCeeEEEeeecC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-----------PLESCTSHQ------------APVTLVQSHLSG 1563 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-----------~l~tL~gHs------------s~VtsLq~afSp 1563 (1922)
|. +.|++++|+|+|++|++|+.||.|+|||+.+++ ....+.+|. ..|+++ .|+|
T Consensus 27 ~~-~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l--~~~~ 103 (447)
T 3dw8_B 27 EA-DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI--RWLP 103 (447)
T ss_dssp GG-GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE--EECC
T ss_pred cc-CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEE--EEcC
Confidence 56 899999999999999999999999999998877 477889998 889999 8899
Q ss_pred CC--cEEEE-ecCCcEEEeccCCCCCCc---------------------------------------ceEe-cc----ce
Q 000177 1564 ET--QLLLS-SSSQDVHLWNASSIAGGP---------------------------------------MHSF-EG----CK 1596 (1922)
Q Consensus 1564 DG--~lLaS-SsDgtVkLWDl~t~~gk~---------------------------------------l~tf-~g----h~ 1596 (1922)
++ .+|++ +.|++|++||+.. +.. ...+ .+ ++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISE--RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEE--EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred CCCcceEEEeCCCCeEEEEeccc--ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 87 66666 5699999999975 211 1122 23 37
Q ss_pred eEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcCCC-CeEeecc-----EEEEcC
Q 000177 1597 AARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG-----ILWDRR 1669 (1922)
Q Consensus 1597 sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg-----rLWDlr 1669 (1922)
+++|+|++++|+++ .|++|++||+++ ++.+..+.........+...+..++|+|++ ++|++++ ++||++
T Consensus 182 ~~~~~~~~~~l~s~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 182 SISINSDYETYLSA----DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EEEECTTSSEEEEE----CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCEEEEe----CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 89999999999986 389999999994 444443321111111233445569999999 8999877 999999
Q ss_pred CCcc----eeeeccCCC------------ce-EEEEecCCCEEEEEe----EEEecCC-CeEEEEEcCCCc-e-------
Q 000177 1670 NSVP----VHRFDQFTD------------HG-GGGFHPAGNEVIINS----EVWDLRK-FRLLRSVPSLDQ-T------- 1719 (1922)
Q Consensus 1670 tgk~----I~kf~gh~~------------~V-sVaFSPdG~~LASGS----eIWDLrT-gklL~tl~gH~~-~------- 1719 (1922)
+++. +..+..|.. .+ +++|+|+|++|++++ +|||+++ ++++.++.+|.. .
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccc
Confidence 9887 788888875 67 999999999999998 5999997 888889988864 1
Q ss_pred ---------eEEEccCCCEEEEEEccCchhhhhhhcccccc------cC-----CcceEEEEe--cC--CCceeeeeccC
Q 000177 1720 ---------TITFNARGDVIYAILRRNLEDVMSAVHTRRVK------HP-----LFAAFRTVD--AI--NYSDIATIPVD 1775 (1922)
Q Consensus 1720 ---------sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~k------sp-----~~ssFrt~D--a~--dys~IaTidvk 1775 (1922)
.++|+|+|++|+++..+....+| .+...+.. .+ ....-++.. .. .......++..
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF-DRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN 416 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTTEEEEE-ETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred cccccccceEEEECCCCCEEEEeccCCEEEEE-EcCCCcceeeeecccccccccccCCccccccCCcccccccccccccC
Confidence 29999999999988544332222 11110000 00 000000000 00 00011133456
Q ss_pred CceEEEEEcCCCceEEEEe
Q 000177 1776 RCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1776 r~I~dLa~SPdds~LAVVe 1794 (1922)
..|..++|+|++..||+..
T Consensus 417 ~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp SCCCEEEECSSSSEEEEEC
T ss_pred CceeEEEECCCCCEEEEEe
Confidence 6799999999999999773
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-24 Score=254.98 Aligned_cols=279 Identities=17% Similarity=0.259 Sum_probs=214.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~ 1585 (1922)
|. +.|++++|+|++++|++|+.||.|+||| .+++.+..+.+|...|+++ .|+|++++|+++ .|+.|++||+.+
T Consensus 107 ~~-~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~d~~i~iwd~~~-- 180 (425)
T 1r5m_A 107 TT-NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSV--KWNKDGTHIISMDVENVTILWNVIS-- 180 (425)
T ss_dssp -C-BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEE--EECTTSSEEEEEETTCCEEEEETTT--
T ss_pred CC-CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEE--EECCCCCEEEEEecCCeEEEEECCC--
Confidence 67 8999999999999999999999999999 6788889999999999999 889999998885 599999999987
Q ss_pred CCcceEecc-------------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1586 GGPMHSFEG-------------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1586 gk~l~tf~g-------------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++.+..+.. +.++.|+|++. ++++ +.|+.|++||+.+++.+..+. .+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~g~i~~~d~~~~~~~~~~~-------~~~~~ 249 (425)
T 1r5m_A 181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIP---GPKGAIFVYQITEKTPTGKLI-------GHHGP 249 (425)
T ss_dssp TEEEEEECCC---------------CCCBSCCEEEETTE-EEEE---CGGGCEEEEETTCSSCSEEEC-------CCSSC
T ss_pred CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEE---cCCCeEEEEEcCCCceeeeec-------cCCCc
Confidence 666665543 56789998855 6676 778999999999998877775 12334
Q ss_pred ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1647 YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
...++|+|++++|++++ ++||+++++++..+..|...+ ++.|+|++ ++++++ .+||+++++.+..+..
T Consensus 250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 328 (425)
T 1r5m_A 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV 328 (425)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc
Confidence 45599999999999877 999999999999999998888 99999999 888887 5999999999999988
Q ss_pred CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccc-cccC-CcceEEEEecCCCceeeeeccC--C-ceEEEEEcCCCc
Q 000177 1716 LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRR-VKHP-LFAAFRTVDAINYSDIATIPVD--R-CVLDFATERTDS 1788 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr-~ksp-~~ssFrt~Da~dys~IaTidvk--r-~I~dLa~SPdds 1788 (1922)
|.. ++++|+|+|++|+++..+....++. +.... .... ....-..+.......+..+... . .|.+++|+|++.
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 407 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYD-LKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN 407 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEE-CHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS
T ss_pred CCccEEEEEEcCCCCEEEEEECCCeEEEEE-CCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc
Confidence 765 8999999999999986443222221 10000 0000 0000001111111255666554 4 899999999999
Q ss_pred eEEEEecCCCCCccceEEEEEe
Q 000177 1789 FVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1789 ~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
++++.. .++.+++|++
T Consensus 408 ~l~~~~------~dg~i~iw~~ 423 (425)
T 1r5m_A 408 KISVAY------SLQEGSVVAI 423 (425)
T ss_dssp EEEEEE------SSSCCEEEEC
T ss_pred eEEEEe------cCceEEEEee
Confidence 988764 3367899986
No 33
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.94 E-value=1e-24 Score=281.13 Aligned_cols=258 Identities=14% Similarity=0.185 Sum_probs=222.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
+...++|.+|. +.|++++|+|+|++|++|+.||+|+|||+.+++.+.++.+|..+|+++ .|+|++++|+++ .|++|
T Consensus 3 l~~~~~~~~h~-~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 3 LDIKKTFSNRS-DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAG--KFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp CCCEEEEEEEC-SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EEEGGGTEEEEEETTSEE
T ss_pred cccceeeecCC-CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEE--EEeCCCCEEEEEeCCCeE
Confidence 45567889999 999999999999999999999999999999999999999999999999 889999999985 59999
Q ss_pred EEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceEEE
Q 000177 1577 HLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
++||+.+ ++.+.++.+| ++++|+|++++|+++ +.|++|++||+.++ .....+. .+.+....++
T Consensus 80 ~vw~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~vw~~~~~~~~~~~~~-------~~~~~v~~~~ 147 (814)
T 3mkq_A 80 RVFNYNT--GEKVVDFEAHPDYIRSIAVHPTKPYVLSG---SDDLTVKLWNWENNWALEQTFE-------GHEHFVMCVA 147 (814)
T ss_dssp EEEETTT--CCEEEEEECCSSCEEEEEECSSSSEEEEE---ETTSEEEEEEGGGTSEEEEEEE-------CCSSCEEEEE
T ss_pred EEEECCC--CcEEEEEecCCCCEEEEEEeCCCCEEEEE---cCCCEEEEEECCCCceEEEEEc-------CCCCcEEEEE
Confidence 9999998 7788888765 789999999999998 88999999999987 5555553 2334456699
Q ss_pred EcC-CCCeEeecc-----EEEEcCCCcceeeeccCC-Cce-EEEEec--CCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1652 FSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQFT-DHG-GGGFHP--AGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1652 FSP-dG~lLaSgg-----rLWDlrtgk~I~kf~gh~-~~V-sVaFSP--dG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
|+| ++.++++++ ++||+.+++....+..+. ..+ +++|+| ++.+|++++ .+||+++++.+.++.+|
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~ 227 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 999 788888776 899999998888887665 556 999999 999999998 59999999999999988
Q ss_pred Cc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCce
Q 000177 1717 DQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSF 1789 (1922)
Q Consensus 1717 ~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~ 1789 (1922)
.. ++++|+|+|++|+++.. +..+++|+..++..+.++.. ...+..++|+|++..
T Consensus 228 ~~~v~~~~~~~~~~~l~~~~~-------------------dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 228 MSNVSFAVFHPTLPIIISGSE-------------------DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEET-------------------TSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGG
T ss_pred CCCEEEEEEcCCCCEEEEEeC-------------------CCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCc
Confidence 66 79999999999999852 24577888888877777765 356999999999874
No 34
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.94 E-value=9.5e-25 Score=261.28 Aligned_cols=219 Identities=16% Similarity=0.224 Sum_probs=183.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~ 1588 (1922)
..|++++|+|+|++|++|+.|++|+|||+.+++.+..+.+|...|+++ .|+|++++|+++ .|++|++||+++ +++
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~--~~~p~~~~l~s~s~d~~v~iwd~~~--~~~ 199 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL--DYFPSGDKLVSGSGDRTVRIWDLRT--GQC 199 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EECTTSSEEEEEETTSEEEEEETTT--TEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEE--EEcCCCCEEEEecCCCcEEEEECCC--Cee
Confidence 359999999999999999999999999999999999999999999999 889999999985 699999999987 666
Q ss_pred ceEecc---ceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-
Q 000177 1589 MHSFEG---CKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG- 1663 (1922)
Q Consensus 1589 l~tf~g---h~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg- 1663 (1922)
...+.. +.+++|+| ++++|+++ +.|++|++||++++..+..+........++...+..++|+|+|++|++++
T Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~---s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 200 SLTLSIEDGVTTVAVSPGDGKYIAAG---SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEE---ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEcCCCcEEEEEECCCCCEEEEE---cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 666543 47899999 89999999 88999999999999888777422111122334455599999999999887
Q ss_pred ----EEEEcCCC------------cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--e
Q 000177 1664 ----ILWDRRNS------------VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--T 1719 (1922)
Q Consensus 1664 ----rLWDlrtg------------k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~ 1719 (1922)
++||+++. .+...+.+|...+ +++|+|++.+|++++ ++||+++++++.++.+|.. .
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~ 356 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEE
Confidence 99999863 3566788899888 999999999999999 5999999999999999987 7
Q ss_pred eEEEcc------CCCEEEEEEc
Q 000177 1720 TITFNA------RGDVIYAILR 1735 (1922)
Q Consensus 1720 sVaFSP------dG~~LaSgs~ 1735 (1922)
+++|++ ++.+|++++.
T Consensus 357 ~v~~~~~~~~~p~~~~l~sgs~ 378 (393)
T 1erj_A 357 SVAVANGSSLGPEYNVFATGSG 378 (393)
T ss_dssp EEEECSSCTTCTTCEEEEEEET
T ss_pred EEEecCCcCcCCCCCEEEEECC
Confidence 888876 6889998853
No 35
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.94 E-value=6.2e-25 Score=254.66 Aligned_cols=216 Identities=13% Similarity=0.174 Sum_probs=183.6
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
+..|. +.|++++|+|++++|++|+.|+.|+|||+.+++ .+..+.+|...|+++ .|+|++++|+++ .|++|++||
T Consensus 4 ~~~~~-~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLV-EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGV--DWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCS-SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEE--EEETTTTEEEEEETTSCEEEEE
T ss_pred ecccC-CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEE--EEeCCCCEEEEEcCCCeEEEEE
Confidence 34588 899999999999999999999999999999887 888999999999999 889999999985 599999999
Q ss_pred cCCCCCCcceEe--cc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee---eeeccccccccCCCCcceEEE
Q 000177 1581 ASSIAGGPMHSF--EG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE---AKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1581 l~t~~gk~l~tf--~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i---~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
+.+ ++....+ .. +.+++|+|++++|+++ +.|+.|++||+.++... ..+. ..+......++
T Consensus 81 ~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~v~i~d~~~~~~~~~~~~~~------~~~~~~i~~~~ 149 (372)
T 1k8k_C 81 LKG--RTWKPTLVILRINRAARCVRWAPNEKKFAVG---SGSRVISICYFEQENDWWVCKHIK------KPIRSTVLSLD 149 (372)
T ss_dssp EET--TEEEEEEECCCCSSCEEEEEECTTSSEEEEE---ETTSSEEEEEEETTTTEEEEEEEC------TTCCSCEEEEE
T ss_pred CCC--CeeeeeEEeecCCCceeEEEECCCCCEEEEE---eCCCEEEEEEecCCCcceeeeeee------cccCCCeeEEE
Confidence 987 4433332 22 4789999999999999 78899999999987742 2222 11234455599
Q ss_pred EcCCCCeEeecc-----EEEEcC------------------CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1652 FSPSDTMLLWNG-----ILWDRR------------------NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlr------------------tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
|+|++++|++++ ++||++ +++++..+..|...+ +++|+|++++|++++ ++|
T Consensus 150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 999999999876 899954 678889999998888 999999999999998 599
Q ss_pred ecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1703 DLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1703 DLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
|+++++++.++..|.. ++++|+|+|.+++++
T Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 230 DADKKMAVATLASETLPLLAVTFITESSLVAAG 262 (372)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE
T ss_pred ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE
Confidence 9999999999998865 899999999999888
No 36
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.94 E-value=1.9e-24 Score=247.96 Aligned_cols=226 Identities=18% Similarity=0.297 Sum_probs=197.4
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
....+...++.+|. ..|++++|+|++++|++|+.||+|+|||+.+++++..+.+|...|.++ .|+|++++|+++ .|
T Consensus 52 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~s~~~d 128 (312)
T 4ery_A 52 AYDGKFEKTISGHK-LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC--NFNPQSNLIVSGSFD 128 (312)
T ss_dssp TTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSSSEEEEEETT
T ss_pred CCCcccchhhccCC-CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEE--EEcCCCCEEEEEeCC
Confidence 44566778889999 999999999999999999999999999999999999999999999999 889999999995 59
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
++|++||+++ ++++..+..| .++.|+|++++|+++ +.|+.|++||+++++.+..+. .........
T Consensus 129 ~~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~~wd~~~~~~~~~~~------~~~~~~~~~ 197 (312)
T 4ery_A 129 ESVRIWDVKT--GKCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLI------DDDNPPVSF 197 (312)
T ss_dssp SCEEEEETTT--CCEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTTCCEEEEEC------CSSCCCEEE
T ss_pred CcEEEEECCC--CEEEEEecCCCCcEEEEEEcCCCCEEEEE---eCCCcEEEEECCCCceeeEEe------ccCCCceEE
Confidence 9999999998 7778887764 789999999999999 889999999999998887764 112334555
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce---EEEEe-cCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG---GGGFH-PAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V---sVaFS-PdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
++|+|++++|++++ ++||+++++++..+.+|.... ...|+ +++.+|++++ ++||+.+++++..+.+
T Consensus 198 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~ 277 (312)
T 4ery_A 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277 (312)
T ss_dssp EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhc
Confidence 99999999999877 999999999999998887643 34444 6788999998 5999999999999999
Q ss_pred CCc--eeEEEccCCCEEEEEE
Q 000177 1716 LDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs 1734 (1922)
|.. .+++|+|++.+++++.
T Consensus 278 h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 278 HTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEE
T ss_pred cCCcEEEEeecCcCCceEEEE
Confidence 977 7999999999999885
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6e-24 Score=239.95 Aligned_cols=272 Identities=15% Similarity=0.124 Sum_probs=218.3
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..+++.++|.+|. +.|++++| +++++|++|+.||.|+|||+.+++....+..|...|+++ .|+|++++|+++ .|+
T Consensus 6 ~~~~~~~~l~~h~-~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 6 TGYQLSATLKGHD-QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSV--CYDSEKELLLFGGKDT 81 (313)
T ss_dssp CCCEEEEEECCCS-SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEE--EEETTTTEEEEEETTS
T ss_pred ccHHHHHHhhCCC-CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEE--EECCCCCEEEEecCCC
Confidence 4567788999999 99999999 999999999999999999999999899999999999999 889999999985 699
Q ss_pred cEEEeccCCCC-CCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1575 DVHLWNASSIA-GGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1575 tVkLWDl~t~~-gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
.|++|++.... .+++..+.+| .++.| ++++++++ +.|+.|++|| .++.+..+. .+......
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~---~~d~~i~~~d--~~~~~~~~~-------~~~~~v~~ 147 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISG---SWDKTAKVWK--EGSLVYNLQ-------AHNASVWD 147 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEE---ETTSEEEEEE--TTEEEEEEE-------CCSSCEEE
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEE---eCCCCEEEEc--CCcEEEecc-------cCCCceeE
Confidence 99999987621 3456666654 67777 67899998 8899999999 556666654 12334444
Q ss_pred EEEcC-CCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1650 IHFSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1650 VaFSP-dG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
+.|+| +++++++++ ++|| .++.+..+.. |...+ ++.|+|++. +++++ .+||+++++++..+.+|
T Consensus 148 ~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~ 224 (313)
T 3odt_A 148 AKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGH 224 (313)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcC
Confidence 88887 888998777 9999 5567777877 77777 999999999 77776 59999999999999988
Q ss_pred Cc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-ceEEEEEcCCCceEEEE
Q 000177 1717 DQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-CVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1717 ~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-~I~dLa~SPdds~LAVV 1793 (1922)
.. ++++|+|+|. |+++. .+..+++|+..+.+.+..+.... .|..++|+|++.+++ .
T Consensus 225 ~~~i~~~~~~~~~~-l~~~~-------------------~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~ 283 (313)
T 3odt_A 225 ESFVYCIKLLPNGD-IVSCG-------------------EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIV-G 283 (313)
T ss_dssp SSCEEEEEECTTSC-EEEEE-------------------TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEE-E
T ss_pred CceEEEEEEecCCC-EEEEe-------------------cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEE-E
Confidence 76 8999999995 55653 23457788877777777776644 799999999998554 2
Q ss_pred ecCCCCCccceEEEEEecCCCC
Q 000177 1794 TMDDQEDMFSSARIYEIGRRRP 1815 (1922)
Q Consensus 1794 e~dds~d~dSsVRLyEVGr~r~ 1815 (1922)
..++.+++|++...+.
T Consensus 284 ------~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 284 ------SSDNLVRIFSQEKSRW 299 (313)
T ss_dssp ------ETTSCEEEEESCGGGC
T ss_pred ------eCCCcEEEEeCCCCce
Confidence 1347899999865443
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.7e-25 Score=260.95 Aligned_cols=294 Identities=13% Similarity=0.169 Sum_probs=212.9
Q ss_pred eeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CCceeeeccCCCCeeEEEeeecCC-CcEEEEe-cC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS----SSPLESCTSHQAPVTLVQSHLSGE-TQLLLSS-SS 1573 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t----gk~l~tL~gHss~VtsLq~afSpD-G~lLaSS-sD 1573 (1922)
++..+ .|. ..|++++|+|++++|++|+.||.|+|||+.+ .+.+..+.+|...|+++ .|+|+ +++|+++ .|
T Consensus 60 ~~~~~-~~~-~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~~~d 135 (416)
T 2pm9_A 60 PIASL-QVD-SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTV--KFNAKQDNVLASGGNN 135 (416)
T ss_dssp CSCCC-CCS-SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEE--EECSSSTTBEEEECSS
T ss_pred EEEEE-ecC-CceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEE--EEcCCCCCEEEEEcCC
Confidence 33433 577 8999999999999999999999999999987 45778889999999999 88998 8888885 59
Q ss_pred CcEEEeccCCCCCC------cceEe---cc----ceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeecccccc
Q 000177 1574 QDVHLWNASSIAGG------PMHSF---EG----CKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVN 1639 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk------~l~tf---~g----h~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~ 1639 (1922)
++|++||+.+ +. ....+ .. +.+++|+|+ +.+|+++ +.|+.|++||+++++.+..+.....
T Consensus 136 g~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~v~iwd~~~~~~~~~~~~~~~- 209 (416)
T 2pm9_A 136 GEIFIWDMNK--CTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA---GSSNFASIWDLKAKKEVIHLSYTSP- 209 (416)
T ss_dssp SCEEBCBTTT--TSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE---SSSSCEEEEETTTTEEEEEECCCCC-
T ss_pred CeEEEEECCC--CccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE---cCCCCEEEEECCCCCcceEEecccc-
Confidence 9999999987 33 22222 22 488999998 7899998 8899999999999998888761110
Q ss_pred ccCCCCcceEEEEcCCC-CeEeecc--------EEEEcCCC-cceeeec-cCCCce-EEEEec-CCCEEEEEe-----EE
Q 000177 1640 LTGRGHAYSQIHFSPSD-TMLLWNG--------ILWDRRNS-VPVHRFD-QFTDHG-GGGFHP-AGNEVIINS-----EV 1701 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG-~lLaSgg--------rLWDlrtg-k~I~kf~-gh~~~V-sVaFSP-dG~~LASGS-----eI 1701 (1922)
..++......++|+|++ .++++++ ++||++++ +++..+. +|...+ +++|+| ++++|++++ ++
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 00113345569999998 5676544 79999987 6788888 888888 999999 999999998 59
Q ss_pred EecCCCeEEEEEcCCCc--eeEEEccCC-CEEEEEEccCchhhhhhhcccccccCCc--------ceEEEEec-------
Q 000177 1702 WDLRKFRLLRSVPSLDQ--TTITFNARG-DVIYAILRRNLEDVMSAVHTRRVKHPLF--------AAFRTVDA------- 1763 (1922)
Q Consensus 1702 WDLrTgklL~tl~gH~~--~sVaFSPdG-~~LaSgs~~d~~dv~s~lh~rr~ksp~~--------ssFrt~Da------- 1763 (1922)
||+++++++.++.+|.. ++++|+|++ .+|+++..+....++. +.......... .....+..
T Consensus 290 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 290 WNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT-LQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp ECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE-SCCCCCSSCC----------------------CC
T ss_pred eeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE-ccCCCCCcccccccccccCCcccccccccccccc
Confidence 99999999999998876 799999999 7888875444333221 11111000000 00000000
Q ss_pred ---CCCceeeeec-cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1764 ---INYSDIATIP-VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1764 ---~dys~IaTid-vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+.. .... ..+.+..++|+|+|+++++. ..++.|+||++.
T Consensus 369 ~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~------~~d~~v~~w~~~ 413 (416)
T 2pm9_A 369 EKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQIT------PDGKGVSITNPK 413 (416)
T ss_dssp SCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBC------TTSSCBCCBCCC
T ss_pred cccccccc-cCCccccCCccceEEeeCCeEEEEe------CCCCeEEEEEec
Confidence 00000 0001 24567789999999998854 345788999763
No 39
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=1.3e-24 Score=250.00 Aligned_cols=223 Identities=12% Similarity=0.188 Sum_probs=177.5
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CCceeeeccCCCCeeEEEeeecC--CCcEEEEe-cCCc
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS--SSPLESCTSHQAPVTLVQSHLSG--ETQLLLSS-SSQD 1575 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t--gk~l~tL~gHss~VtsLq~afSp--DG~lLaSS-sDgt 1575 (1922)
+.++.+|. +.|++++|+|+|++|++|+.|++|+|||+.+ ++++.++.+|..+|+++ .|++ ++++|+++ .|++
T Consensus 2 ~~~~~~h~-~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v--~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 2 VVIANAHN-EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV--DWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp CEECCSCS-SCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEE--EECCGGGCSEEEEEETTTE
T ss_pred ceeccCCc-CceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEE--EecCCCcCCEEEEEcCCCE
Confidence 34678999 9999999999999999999999999999974 46788999999999999 7765 48888885 5999
Q ss_pred EEEeccCCCCCCcceEecc----ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCcee--eeeccccccccCCCCcc
Q 000177 1576 VHLWNASSIAGGPMHSFEG----CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLE--AKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~g----h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i--~tL~d~s~~~~~~gh~~ 1647 (1922)
|+|||+.+.....+..+.+ +++++|+|+ +.+|+++ +.|++|++||++++... ..+. .+...+
T Consensus 79 v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~---s~d~~v~~wd~~~~~~~~~~~~~-------~h~~~v 148 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVA---SSDGKVSVVEFKENGTTSPIIID-------AHAIGV 148 (297)
T ss_dssp EEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSEEEEEEBCSSSCBCCEEEE-------CCSSCE
T ss_pred EEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEE---ECCCcEEEEEecCCCceeeeeee-------cccCcc
Confidence 9999998722235556655 378999997 8899999 88999999999876422 2222 123344
Q ss_pred eEEEEcCC-------------CCeEeecc-----EEEEcCCCc----ceeeeccCCCce-EEEEecCC---CEEEEEe--
Q 000177 1648 SQIHFSPS-------------DTMLLWNG-----ILWDRRNSV----PVHRFDQFTDHG-GGGFHPAG---NEVIINS-- 1699 (1922)
Q Consensus 1648 ~vVaFSPd-------------G~lLaSgg-----rLWDlrtgk----~I~kf~gh~~~V-sVaFSPdG---~~LASGS-- 1699 (1922)
..++|+|+ +++|++++ ++||+++++ .+..+.+|...| +++|+|++ .+|++++
T Consensus 149 ~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred ceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECC
Confidence 55999997 56888877 999999876 567889999999 99999995 8999998
Q ss_pred ---EEEecCCCe---EEEEE--cCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1700 ---EVWDLRKFR---LLRSV--PSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1700 ---eIWDLrTgk---lL~tl--~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
+|||+++.. ....+ ..|.. ++++|+|+|++|+++..+
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD 275 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETT
T ss_pred CcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCC
Confidence 699998743 22233 34443 799999999999998643
No 40
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.94 E-value=1.6e-24 Score=256.36 Aligned_cols=227 Identities=15% Similarity=0.232 Sum_probs=194.2
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------CceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS------SPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg------k~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
....+..+.+..|. ..|.+++|+|+|.+|++|+.|+.|++|++... .....+.+|...|.++ .|+|++..|
T Consensus 93 ~~~~~~~~~~~~~~-~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l 169 (354)
T 2pbi_B 93 SFTTNKEHAVTMPC-TWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSAC--SFTNSDMQI 169 (354)
T ss_dssp TTTCCEEEEEECSS-SCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEE--EECSSSSEE
T ss_pred CCCCCcceEEecCC-CCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEE--EEeCCCCEE
Confidence 34566677888898 89999999999999999999999999998654 2456778999999999 889999888
Q ss_pred EE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1569 LS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1569 aS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
++ +.|++|++||+.+ ++++.++.+| .++.|+| ++++|++| +.|++|++||+++++++.++.
T Consensus 170 ~t~s~D~~v~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sg---s~Dg~v~~wd~~~~~~~~~~~------- 237 (354)
T 2pbi_B 170 LTASGDGTCALWDVES--GQLLQSFHGHGADVLCLDLAPSETGNTFVSG---GCDKKAMVWDMRSGQCVQAFE------- 237 (354)
T ss_dssp EEEETTSEEEEEETTT--CCEEEEEECCSSCEEEEEECCCSSCCEEEEE---ETTSCEEEEETTTCCEEEEEC-------
T ss_pred EEEeCCCcEEEEeCCC--CeEEEEEcCCCCCeEEEEEEeCCCCCEEEEE---eCCCeEEEEECCCCcEEEEec-------
Confidence 88 5699999999998 8888888876 5788887 57899999 889999999999999988875
Q ss_pred CCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC--Cce-EEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1642 GRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--DHG-GGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--~~V-sVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
.+...+..++|+|++.+|++++ ++||+++++.+..+..+. ..+ ++.|+|+|.+|++++ +|||+.+++
T Consensus 238 ~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 238 THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence 1233455599999999999887 999999998887776543 234 899999999999998 599999999
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
.+.++.+|.. ++++|+|+|++|++++.+
T Consensus 318 ~~~~l~~h~~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 318 RVSILFGHENRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred eEEEEECCCCcEEEEEECCCCCEEEEEcCC
Confidence 9999999987 799999999999999643
No 41
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.94 E-value=9.1e-24 Score=261.35 Aligned_cols=268 Identities=19% Similarity=0.318 Sum_probs=222.1
Q ss_pred CceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCc
Q 000177 1497 RFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQD 1575 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgt 1575 (1922)
..+.+.++.+|. ..|++++|+|++++|++++.|++|++||. +++.+..+.+|...|+++ +|+|++++|+++ .|++
T Consensus 251 ~~~~~~~~~~~~-~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~--~~~~~~~~l~t~~~d~~ 326 (577)
T 2ymu_A 251 NGQLLQTLTGHS-SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV--AFSPDGQTIASASDDKT 326 (577)
T ss_dssp TSCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSC
T ss_pred CCCEEEEEecCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEE--EECCCCCEEEEEeCCCe
Confidence 456778899999 99999999999999999999999999996 577888899999999999 899999999984 6999
Q ss_pred EEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|++||+.. ..+..+.+| ++++|+|++++|+++ +.|+.|++||. +++.+.++. .+...+..++
T Consensus 327 i~~w~~~~---~~~~~~~~~~~~v~~~~~s~~g~~l~~~---~~dg~v~~~~~-~~~~~~~~~-------~~~~~v~~~~ 392 (577)
T 2ymu_A 327 VKLWNRNG---QHLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWNR-NGQLLQTLT-------GHSSSVRGVA 392 (577)
T ss_dssp EEEEETTS---CEEEEECCCSSCEEEEEECTTSSEEEEE---ETTSEEEEEET-TCCEEEEEE-------CCSSCEEEEE
T ss_pred EEEEeCCC---CeeEEEeCCCCCEEEEEECCCCCEEEEE---eCCCEEEEEcC-CCCEEEEec-------CCCCCeEEEE
Confidence 99999864 455666654 789999999999999 88999999995 566666665 1233444599
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-- 1718 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-- 1718 (1922)
|+|++++|++++ ++||. +++.+.++.+|...+ +++|+|++++|++++ ++||+ +++.+.++.+|..
T Consensus 393 ~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v 470 (577)
T 2ymu_A 393 FSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSV 470 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCE
T ss_pred ECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCE
Confidence 999999999876 89994 678889999999988 999999999999998 59996 5788889998876
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCC
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
++++|+|+|++|+++..+ ..+++|+. +.+.+.++.. ...|..++|+|++++|++..
T Consensus 471 ~~~~~spd~~~las~~~d-------------------~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--- 527 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASDD-------------------KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--- 527 (577)
T ss_dssp EEEEECTTSCEEEEEETT-------------------SEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE---
T ss_pred EEEEEcCCCCEEEEEeCC-------------------CEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE---
Confidence 799999999999998532 34556663 3444555544 45699999999999998764
Q ss_pred CCCccceEEEEEe
Q 000177 1798 QEDMFSSARIYEI 1810 (1922)
Q Consensus 1798 s~d~dSsVRLyEV 1810 (1922)
.+..+++|+.
T Consensus 528 ---~dg~v~lwd~ 537 (577)
T 2ymu_A 528 ---DDKTVKLWNR 537 (577)
T ss_dssp ---TTSEEEEECT
T ss_pred ---CcCEEEEEeC
Confidence 3468999974
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.1e-24 Score=251.70 Aligned_cols=273 Identities=9% Similarity=0.126 Sum_probs=216.2
Q ss_pred cCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCC------ceeeecc----------CCCCeeEEEeeecC
Q 000177 1505 RDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDS----NSSS------PLESCTS----------HQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl----~tgk------~l~tL~g----------Hss~VtsLq~afSp 1563 (1922)
..|. +.|++++|+|+|+ +|++|+.||.|+||++ .+++ ....+.. |...|+++ .|+|
T Consensus 42 ~~~~-~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~ 118 (425)
T 1r5m_A 42 IVKL-DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCL--AWSH 118 (425)
T ss_dssp EEEC-SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEE--EECT
T ss_pred eecc-CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEE--EEcC
Confidence 3477 8999999999999 9999999999999999 8888 4444443 68899999 8899
Q ss_pred CCcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1564 ETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1564 DG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
++++|+++ .|+.|++||. + +..+..+.+| ++++|+|++++|+++ +.|+.|++||+.+++.+..+.....
T Consensus 119 ~~~~l~~~~~dg~i~i~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 119 DGNSIVTGVENGELRLWNK-T--GALLNVLNFHRAPIVSVKWNKDGTHIISM---DVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp TSSEEEEEETTSCEEEEET-T--SCEEEEECCCCSCEEEEEECTTSSEEEEE---ETTCCEEEEETTTTEEEEEECCC--
T ss_pred CCCEEEEEeCCCeEEEEeC-C--CCeeeeccCCCccEEEEEECCCCCEEEEE---ecCCeEEEEECCCCcEEEEeecccc
Confidence 99999985 5999999994 3 6777777764 789999999999999 7899999999999998887752110
Q ss_pred cc--------cCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----E
Q 000177 1639 NL--------TGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----E 1700 (1922)
Q Consensus 1639 ~~--------~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----e 1700 (1922)
.. ...+.....+.|+|++.+++.+. ++||+++++++..+..|...+ +++|+|++++|++++ .
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 00 00001144589999877555443 999999999999999999888 999999999999998 5
Q ss_pred EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCc
Q 000177 1701 VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRC 1777 (1922)
Q Consensus 1701 IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~ 1777 (1922)
+||+++++.+..+.+|.. .++.|+|+| +++++.. +..+++|+..+...+..+.. ...
T Consensus 273 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-------------------d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 273 IWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSM-------------------DGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp EECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEET-------------------TSEEEEEETTTTEEEEEEECTTCC
T ss_pred EEECCCCccceEecCCCccEEEEEECCCC-EEEEEeC-------------------CCcEEEEECCCCcEeEecccCCcc
Confidence 999999999999987766 799999999 7777742 34567788777777777765 567
Q ss_pred eEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1778 VLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1778 I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
|..++|+|++.++++.. .++.+++|++..
T Consensus 333 i~~~~~s~~~~~l~~~~------~dg~i~i~~~~~ 361 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAF------MDGQVNVYDLKK 361 (425)
T ss_dssp EEEEEECTTSSEEEEEE------TTSCEEEEECHH
T ss_pred EEEEEEcCCCCEEEEEE------CCCeEEEEECCC
Confidence 99999999999998764 246799998754
No 43
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.93 E-value=1.7e-24 Score=249.24 Aligned_cols=269 Identities=13% Similarity=0.142 Sum_probs=211.5
Q ss_pred ecCCCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCceeeecc-----CCCCeeEEEeeecCC----CcEEEE
Q 000177 1504 CRDDAGALLTCITFLGD----SSHIAVGSHTKELKIFDSNSSSPLESCTS-----HQAPVTLVQSHLSGE----TQLLLS 1570 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPD----G~lLASGS~DGtIkIWDl~tgk~l~tL~g-----Hss~VtsLq~afSpD----G~lLaS 1570 (1922)
..+|. +.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|+++ +|+|+ +.+|++
T Consensus 14 ~~~h~-~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 14 KEDHN-QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTC--AWTYDSNTSHPLLAV 90 (366)
T ss_dssp ECTTC-SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEE--EEEECTTTCCEEEEE
T ss_pred ecCCC-CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEE--EeccCCCCCCCEEEE
Confidence 34799 99999999984 45777777788999999998887776653 56789999 77877 668888
Q ss_pred -ecCCcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1571 -SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1571 -SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+.|++|++||+.+ ++++..+.+| ++++|+| ++++|+++ +.|+.|++||+++++.+..+.. ...+.
T Consensus 91 ~~~dg~i~v~d~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~----~~~~~ 161 (366)
T 3k26_A 91 AGSRGIIRIINPIT--MQCIKHYVGHGNAINELKFHPRDPNLLLSV---SKDHALRLWNIQTDTLVAIFGG----VEGHR 161 (366)
T ss_dssp EETTCEEEEECTTT--CCEEEEEESCCSCEEEEEECSSCTTEEEEE---ETTSCEEEEETTTTEEEEEECS----TTSCS
T ss_pred ecCCCEEEEEEchh--ceEeeeecCCCCcEEEEEECCCCCCEEEEE---eCCCeEEEEEeecCeEEEEecc----ccccc
Confidence 4699999999998 7788888764 7899999 89999999 8899999999999998887730 01123
Q ss_pred CcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc----------------------------CCCce-EEEEec
Q 000177 1645 HAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ----------------------------FTDHG-GGGFHP 1690 (1922)
Q Consensus 1645 h~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g----------------------------h~~~V-sVaFSP 1690 (1922)
..+..++|+|++++|++++ ++||+++++.+..+.. |...+ ++.|+
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~- 240 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL- 240 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-
T ss_pred CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-
Confidence 4455599999999999887 9999998876655544 77777 99999
Q ss_pred CCCEEEEEe-----EEEecCCCe--------------EEEEEcCCCc--eeEEEccC--CCEEEEEEccCchhhhhhhcc
Q 000177 1691 AGNEVIINS-----EVWDLRKFR--------------LLRSVPSLDQ--TTITFNAR--GDVIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1691 dG~~LASGS-----eIWDLrTgk--------------lL~tl~gH~~--~sVaFSPd--G~~LaSgs~~d~~dv~s~lh~ 1747 (1922)
+++|++++ ++||++++. .+..+.+|.. ++++|+|+ |.+|+++..+
T Consensus 241 -~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d----------- 308 (366)
T 3k26_A 241 -GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV----------- 308 (366)
T ss_dssp -TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT-----------
T ss_pred -CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC-----------
Confidence 77999998 599998864 4778887765 79999999 9999998422
Q ss_pred cccccCCcceEEEEecCCCcee----eeecc---CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1748 RRVKHPLFAAFRTVDAINYSDI----ATIPV---DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1748 rr~ksp~~ssFrt~Da~dys~I----aTidv---kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+++|+..+...+ ..+.. ...|..++|+|++.++++.. .++.+++|++.
T Consensus 309 --------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~iwd~~ 365 (366)
T 3k26_A 309 --------GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC------DDASIWRWDRL 365 (366)
T ss_dssp --------SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE------TTSEEEEEEC-
T ss_pred --------CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe------CCCEEEEEEec
Confidence 34566665554322 23443 36799999999999998764 34789999874
No 44
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=9.4e-24 Score=255.02 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=224.4
Q ss_pred eeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEE
Q 000177 1500 PWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1500 pirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVk 1577 (1922)
+..++++|. .. ++|+.| ++++|++|+.||+|++||+.+++.+.++.+|...|+++ .|++++ +|++ +.|++|+
T Consensus 113 ~~~~l~~h~-~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l--~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 113 QRTTLRGHM-TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL--KYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp EEEEEECCS-SSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EECSTT-EEEEEETTSCEE
T ss_pred ceEEEcCCC-CCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEE--EEcCCC-EEEEEeCCCCEE
Confidence 456789998 55 577777 46799999999999999999999999999999999999 788888 5555 6799999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEc--CCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc--------------c
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFS--NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT--------------S 1637 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFS--PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~--------------s 1637 (1922)
+||+.+ ++++..+.+| .+++|+ +++++++++ +.|++|++||++++......... .
T Consensus 187 vwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~---s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (464)
T 3v7d_B 187 VWDIKK--GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG---SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261 (464)
T ss_dssp EEETTT--TEEEEEECCCSSCEEEEEEEESSSCEEEEEE---ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred EEECCC--CcEEEEECCCCCccEEEEEecCCCCCEEEEE---cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence 999998 7788888765 678888 577899999 88999999999987654321100 0
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
......+|...+.+++++++++++++ ++||+++++++..+.+|...+ +++|+|++++|++++ ++||+++
T Consensus 262 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 262 FVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 01122467788888899999999887 999999999999999999988 999999999999998 5999999
Q ss_pred CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEc
Q 000177 1707 FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATE 1784 (1922)
Q Consensus 1707 gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~S 1784 (1922)
++++.++.+|.. .++.|+ +.+|+++. .+..+++|+..+............+..++++
T Consensus 342 ~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-------------------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 400 (464)
T 3v7d_B 342 GELMYTLQGHTALVGLLRLS--DKFLVSAA-------------------ADGSIRGWDANDYSRKFSYHHTNLSAITTFY 400 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEC--SSEEEEEE-------------------TTSEEEEEETTTCCEEEEEECTTCCCEEEEE
T ss_pred CcEEEEEeCCCCcEEEEEEc--CCEEEEEe-------------------CCCcEEEEECCCCceeeeecCCCCccEEEEE
Confidence 999999999887 678887 57888885 2345778888777777777667778889999
Q ss_pred CCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1785 RTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1785 Pdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
+++.++++.. ++.+++|++...
T Consensus 401 ~~~~~l~~~~-------dg~i~iwd~~~g 422 (464)
T 3v7d_B 401 VSDNILVSGS-------ENQFNIYNLRSG 422 (464)
T ss_dssp ECSSEEEEEE-------TTEEEEEETTTC
T ss_pred eCCCEEEEec-------CCeEEEEECCCC
Confidence 9999888652 367999997543
No 45
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=8.7e-26 Score=264.41 Aligned_cols=217 Identities=11% Similarity=0.133 Sum_probs=173.8
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--CceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS--SPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg--k~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
+..|. +.|++++|+|+|++|++|+.|+.|+|||+.++ +.+.++.+|...|+++ .|+|++++|+++ .|++|+|||
T Consensus 7 ~~~~~-~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILP-KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCV--DWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECS-SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEE--EECTTTCCEEEEETTSSEEEC-
T ss_pred EecCC-CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEE--EEeCCCCEEEEEeCCCeEEEEE
Confidence 34466 78999999999999999999999999999988 7788899999999999 889999999885 599999999
Q ss_pred cCCCCCC---cceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce---eeeeccccccccCCCCcceEE
Q 000177 1581 ASSIAGG---PMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL---EAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1581 l~t~~gk---~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~---i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
+.+ +. +...+.+| ++++|+|++++|+++ +.|++|++||+++++. ...+. ..+...+..+
T Consensus 84 ~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~------~~h~~~v~~~ 152 (377)
T 3dwl_C 84 KRP--DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG---SGARVISVCYFEQENDWWVSKHLK------RPLRSTILSL 152 (377)
T ss_dssp -------CCCCEEECCCCSSCEEEEECCTTSSCCEEE---ESSSCEEECCC-----CCCCEEEC------SSCCSCEEEE
T ss_pred cCC--CCceeeeeEecccCCceEEEEECCCCCEEEEE---ecCCeEEEEEECCcccceeeeEee------cccCCCeEEE
Confidence 987 44 45555543 889999999999999 7899999999998873 45554 0123345559
Q ss_pred EEcCCCCeEeecc-----EEEEcC------------------CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EE
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRR------------------NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EV 1701 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlr------------------tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eI 1701 (1922)
+|+|++++|++++ ++||++ .++++..+ +|...+ +++|+|+|++|++++ ++
T Consensus 153 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~i 231 (377)
T 3dwl_C 153 DWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTI 231 (377)
T ss_dssp EECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-
T ss_pred EEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEE
Confidence 9999999999877 899995 35567777 888888 999999999999998 49
Q ss_pred EecCCCeE----EEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1702 WDLRKFRL----LRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1702 WDLrTgkl----L~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
||+++++. +.++.+|.. ++++|+|+|++|+++..
T Consensus 232 wd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 271 (377)
T 3dwl_C 232 AYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYN 271 (377)
T ss_dssp CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESS
T ss_pred EECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC
Confidence 99999887 778888876 89999999999998843
No 46
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.93 E-value=4.4e-24 Score=250.18 Aligned_cols=220 Identities=18% Similarity=0.335 Sum_probs=176.9
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
..+..++.+|. ..|++++|+|++.+|++|+.|++|+|||+.+++.+.++.+|...|+++ +|+|++++|+++ .|++|
T Consensus 66 ~~~~~~l~~h~-~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v--~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 66 GIPHKALTGHN-HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSV--AFSPDNRQILSAGAEREI 142 (343)
T ss_dssp EEEEEEECCCS-SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEE--EECSSTTEEEEEETTSCE
T ss_pred ccccchhccCC-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEE--EECCCCCEEEEEcCCCEE
Confidence 35677899999 999999999999999999999999999999999999999999999999 899999999985 69999
Q ss_pred EEeccCCCCCCcceEec---c----ceeEEEcCCC----------CEEEEeecCCCCCeEEEEECCCCceeeeecccccc
Q 000177 1577 HLWNASSIAGGPMHSFE---G----CKAARFSNSG----------NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVN 1639 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~---g----h~sVaFSPDG----------~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~ 1639 (1922)
++||+.. .....+. + +.+++|+|++ .+|+++ +.|++|++||. +++...++.
T Consensus 143 ~~wd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~-~~~~~~~~~----- 210 (343)
T 2xzm_R 143 KLWNILG---ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV---GWDGRLKVWNT-NFQIRYTFK----- 210 (343)
T ss_dssp EEEESSS---CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE---ETTSEEEEEET-TTEEEEEEE-----
T ss_pred EEEeccC---CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEE---cCCCEEEEEcC-CCceeEEEc-----
Confidence 9999974 2222222 2 4789999986 789998 88999999994 455555554
Q ss_pred ccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC-CcceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCe
Q 000177 1640 LTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN-SVPVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFR 1708 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt-gk~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgk 1708 (1922)
.+...+..++|+|+|++|++++ ++||++. ..+...+. +...+ +++|+|++.++++++ ++||+.+++
T Consensus 211 --~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 211 --AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQS 287 (343)
T ss_dssp --CCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEESSCEEEEESSSCC
T ss_pred --CccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCC
Confidence 1233445599999999999887 8999954 44555553 33446 999999999998877 699998876
Q ss_pred EEE--EEc-----------CCCc--eeEEEccCCCEEEEEEc
Q 000177 1709 LLR--SVP-----------SLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1709 lL~--tl~-----------gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
... ++. +|.. ++++|+|+|++|+++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~ 329 (343)
T 2xzm_R 288 KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFT 329 (343)
T ss_dssp SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEET
T ss_pred CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecC
Confidence 543 443 4443 79999999999999853
No 47
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.93 E-value=4.1e-24 Score=253.44 Aligned_cols=282 Identities=12% Similarity=0.107 Sum_probs=211.1
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SS 1573 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sD 1573 (1922)
....+...++..|. .+....|++++++|++|+.||.|+|||+.+++....+.+|...|+++ .|+|++++|+++ .|
T Consensus 85 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~s~d 160 (420)
T 3vl1_A 85 TIIRDGSKMLKRAD--YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKL--KFFPSGEALISSSQD 160 (420)
T ss_dssp CCSEETTTTSCSCC--EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEE--EECTTSSEEEEEETT
T ss_pred ecccceeeEEecCC--ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEE--EECCCCCEEEEEeCC
Confidence 34444445555553 45566789999999999999999999999999888889999999999 889999999985 59
Q ss_pred CcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccc---------
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNL--------- 1640 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~--------- 1640 (1922)
++|++||+.+ ++++..+.+| ++++|+|++++|+++ +.|++|++||+++++.+..+.......
T Consensus 161 ~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 235 (420)
T 3vl1_A 161 MQLKIWSVKD--GSNPRTLIGHRATVTDIAIIDRGRNVLSA---SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235 (420)
T ss_dssp SEEEEEETTT--CCCCEEEECCSSCEEEEEEETTTTEEEEE---ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE
T ss_pred CeEEEEeCCC--CcCceEEcCCCCcEEEEEEcCCCCEEEEE---cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEe
Confidence 9999999998 7788888765 789999999999999 889999999999999988875211000
Q ss_pred --------cCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc-CCCce-EEEEecCCC-EEEEEe-----
Q 000177 1641 --------TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGN-EVIINS----- 1699 (1922)
Q Consensus 1641 --------~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~-~LASGS----- 1699 (1922)
..+......++|+|++++|++++ ++||+++++.+..+.. |...+ +++|+|++. +|++++
T Consensus 236 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 236 VGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp ECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeE
Confidence 00012222366789999999877 9999999988777754 66667 999999999 999998
Q ss_pred EEEecCCCe-EEEEEcCCCc---eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC----------
Q 000177 1700 EVWDLRKFR-LLRSVPSLDQ---TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN---------- 1765 (1922)
Q Consensus 1700 eIWDLrTgk-lL~tl~gH~~---~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d---------- 1765 (1922)
++||+++++ ++..+.+|.. +++ +.++|.+|+++..+. .+++|+..+
T Consensus 316 ~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~~~d~-------------------~v~iw~~~~~~~~~~~~~~ 375 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFVSSGFDT-------------------SIKLDIISDPESERPAIEF 375 (420)
T ss_dssp EEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEEEETTTE-------------------EEEEEEECCTTCCSCEECT
T ss_pred EEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEEEecCCc-------------------cEEEEeccCCCCCccceec
Confidence 599999874 4777776433 556 556788888884322 334444322
Q ss_pred CceeeeeccCCceEEEEEcCCCc---eEEEEecCCCCCccceEEEEEec
Q 000177 1766 YSDIATIPVDRCVLDFATERTDS---FVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1766 ys~IaTidvkr~I~dLa~SPdds---~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
............|.+++|+|++. .+.++. ..+.+.+|.+.
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g------~~g~~~~~~~~ 418 (420)
T 3vl1_A 376 ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVG------KNNFCALYNLS 418 (420)
T ss_dssp TSCEEECCSSCCCCEEEEECCSSSSCEEEEEE------TTTEEEEEESC
T ss_pred cCccEEccCCcceEEEEEccCCCCcceEEEEc------CCceEEEEecc
Confidence 11112223356799999999998 455443 23578999863
No 48
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=4.4e-24 Score=245.59 Aligned_cols=293 Identities=10% Similarity=0.097 Sum_probs=204.2
Q ss_pred EEecCCCCCCEEEEEEcCCCC-EEEEEeC---CCcEEEEECCCCCceeee-ccCCCCeeEEEeeecCC---CcEEEEe-c
Q 000177 1502 RTCRDDAGALLTCITFLGDSS-HIAVGSH---TKELKIFDSNSSSPLESC-TSHQAPVTLVQSHLSGE---TQLLLSS-S 1572 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~-lLASGS~---DGtIkIWDl~tgk~l~tL-~gHss~VtsLq~afSpD---G~lLaSS-s 1572 (1922)
+.+++|. +.|++++|+|++. ++++|+. ||.|+|||+.+++..... .+|...|+++ .|+|+ +.+|+++ .
T Consensus 12 ~~~~~h~-~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 12 HIQKGFN-YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCG--TFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEECS-SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEE--ECTTCCTTTCCEEEEET
T ss_pred hhccCCC-CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEE--EEcCCCCCCceEEEecC
Confidence 4557899 9999999999996 5556766 999999999998876554 4899999999 88998 6888875 5
Q ss_pred CCcEEEeccCCCCCC-cceEeccc----eeE------EEcCCCCEEEEeecCCCCCeEEEEECCCCc-eeeeeccccccc
Q 000177 1573 SQDVHLWNASSIAGG-PMHSFEGC----KAA------RFSNSGNLFAALPTETSDRGILLYDIQTYQ-LEAKLSDTSVNL 1640 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk-~l~tf~gh----~sV------aFSPDG~~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~s~~~ 1640 (1922)
|+.|++||+.+ ++ ++..+.+| .++ +|+|++++|+++ +.|+.|++||+++++ .+..+....
T Consensus 89 dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~---~~d~~i~vwd~~~~~~~~~~~~~~~--- 160 (357)
T 3i2n_A 89 GGNLHIWNLEA--PEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTG---SRDGTVKVWDPRQKDDPVANMEPVQ--- 160 (357)
T ss_dssp TSCEEEECTTS--CSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEE---ETTSCEEEECTTSCSSCSEEECCCT---
T ss_pred CCeEEEEeCCC--CCccEEEEEecccceEEEeeccccccCCCccEEEEE---eCCCeEEEEeCCCCCCcceeccccC---
Confidence 99999999997 55 77777765 556 567899999999 889999999999887 566664110
Q ss_pred cCCCCcceEEE----EcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEec---CCCEEEEEe-----EEE
Q 000177 1641 TGRGHAYSQIH----FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHP---AGNEVIINS-----EVW 1702 (1922)
Q Consensus 1641 ~~~gh~~~vVa----FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSP---dG~~LASGS-----eIW 1702 (1922)
.........+. |+|+++++++++ ++||+++++.+.. ..|...+ ++.|+| ++.+|++++ .+|
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~ 239 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVF 239 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence 00011334455 789999999876 9999999887554 5566677 999999 999999998 599
Q ss_pred ecCCCeEEEEEc-----CCCc--eeEEEccCCC-EEEEEEccCchhhhhhhcccccccCC--cceEEEEecCCCceeeee
Q 000177 1703 DLRKFRLLRSVP-----SLDQ--TTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPL--FAAFRTVDAINYSDIATI 1772 (1922)
Q Consensus 1703 DLrTgklL~tl~-----gH~~--~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~--~ssFrt~Da~dys~IaTi 1772 (1922)
|+++++.+..+. +|.. ++++|+|+|. +++++..+....++ .+......... ..... .....+..+.++
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 317 (357)
T 3i2n_A 240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW-KYEYPIQRSKKDSEGIEM-GVAGSVSLLQNV 317 (357)
T ss_dssp EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE-EEECCSCC--CCTTSCCC-CCCCEEEEEEEE
T ss_pred eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe-ecCCCcccccccCCCCcc-ccccccceeecc
Confidence 998876554443 7766 8999999999 77777544322222 11100000000 00000 000011233333
Q ss_pred cc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCC
Q 000177 1773 PV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1773 dv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
.. ...|.+++|+|++.++++.. ..+..+++|++.+.
T Consensus 318 ~~~~~~v~~~~~s~~~~~l~~s~-----~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 318 TLSTQPISSLDWSPDKRGLCVCS-----SFDQTVRVLIVTKL 354 (357)
T ss_dssp ECCSSCEEEEEECSSSTTEEEEE-----ETTSEEEEEEECC-
T ss_pred ccCCCCeeEEEEcCCCCeEEEEe-----cCCCcEEEEECCCc
Confidence 33 45699999999999998532 23478999998653
No 49
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.93 E-value=2.5e-24 Score=256.53 Aligned_cols=227 Identities=16% Similarity=0.256 Sum_probs=187.4
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-------ceeeeccCCCCeeEEEeeecCCC
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-------PLESCTSHQAPVTLVQSHLSGET 1565 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-------~l~tL~gHss~VtsLq~afSpDG 1565 (1922)
|.....+...++++|. ..|++++|+|+|++|++|+.|+.|+|||+.+.. ....+.+|.+.|.++ .|+|++
T Consensus 93 Wd~~~~~~~~~~~~h~-~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~--~~~~~~ 169 (380)
T 3iz6_a 93 WNALTSQKTHAIKLHC-PWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC--QYVPDQ 169 (380)
T ss_dssp EETTTTEEEEEEECCC-TTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCC--BCCSSS
T ss_pred EECCCCccceEEecCC-CCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEE--EEecCC
Confidence 3345677888999999 999999999999999999999999999996532 345778999999999 778863
Q ss_pred -cEEEE-ecCCcEEEeccCCCCCCcceEe-----ccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECC-CCceeee
Q 000177 1566 -QLLLS-SSSQDVHLWNASSIAGGPMHSF-----EGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQ-TYQLEAK 1632 (1922)
Q Consensus 1566 -~lLaS-SsDgtVkLWDl~t~~gk~l~tf-----~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~t 1632 (1922)
..|++ +.|++|++||+.+ ++++..+ .+| .++.|++ ++++|++| +.|++|++||++ ++..+.+
T Consensus 170 ~~~l~s~s~D~~i~~wd~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg---s~D~~v~~wd~~~~~~~~~~ 244 (380)
T 3iz6_a 170 ETRLITGSGDQTCVLWDVTT--GQRISIFGSEFPSGHTADVLSLSINSLNANMFISG---SCDTTVRLWDLRITSRAVRT 244 (380)
T ss_dssp SSCEEEECTTSCEEEECTTT--CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE---ETTSCEEEEETTTTCCCCEE
T ss_pred CCEEEEECCCCcEEEEEcCC--CcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE---ECCCeEEEEECCCCCcceEE
Confidence 45666 5699999999998 7777666 333 6788977 78999999 889999999998 4466666
Q ss_pred eccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC-------ce-EEEEecCCCEEEEEe
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD-------HG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~-------~V-sVaFSPdG~~LASGS 1699 (1922)
+. ++...+..++|+|++++|++++ ++||+++++++..+..+.. .+ +++|+|+|++|++|+
T Consensus 245 ~~-------~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 317 (380)
T 3iz6_a 245 YH-------GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY 317 (380)
T ss_dssp EC-------CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC
T ss_pred EC-------CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE
Confidence 64 2233455699999999999988 9999999998888865432 24 899999999999998
Q ss_pred -----EEEecCCCeEEEEE----cCCCc--eeEEEccCCCEEEEEE
Q 000177 1700 -----EVWDLRKFRLLRSV----PSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 -----eIWDLrTgklL~tl----~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
.+||+.+++.+..+ .+|.. ++++|+|+|.+|++++
T Consensus 318 ~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 59999999988887 46665 8999999999999995
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.93 E-value=2.6e-24 Score=255.31 Aligned_cols=218 Identities=13% Similarity=0.194 Sum_probs=174.1
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee----eeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE----SCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~----tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
...+|. ..|++++|+|++. +++++.||+|+|||+.+++... ...+|...|++| +|+|++++|+++ .|++|+
T Consensus 89 ~~~~~~-~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v--~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 89 AGVQTE-AGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL--SVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp EEEECS-SCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEE--EECSSSSEEEEEETTSCEE
T ss_pred ccCCCC-CCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEE--EECCCCCEEEEEeCCCeEE
Confidence 345688 8999999999975 5578899999999998886543 345899999999 899999999985 599999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
|||+.+ ++++..+.+| ++++|+|++. +++++ +.|++|++||+++++....+. ...+......++|
T Consensus 165 iwd~~~--~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~---~~dg~v~~wd~~~~~~~~~~~-----~~~~~~~v~~v~~ 234 (357)
T 4g56_B 165 VWDLSQ--KAVLKSYNAHSSEVNCVAACPGKDTIFLSC---GEDGRILLWDTRKPKPATRID-----FCASDTIPTSVTW 234 (357)
T ss_dssp EEETTT--TEEEEEECCCSSCEEEEEECTTCSSCEEEE---ETTSCEEECCTTSSSCBCBCC-----CTTCCSCEEEEEE
T ss_pred EEECCC--CcEEEEEcCCCCCEEEEEEccCCCceeeee---ccCCceEEEECCCCceeeeee-----eccccccccchhh
Confidence 999998 7888888775 7899999875 67887 789999999999988776553 0112233455999
Q ss_pred cCCC-CeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCC-CEEEEEe-----EEEecCCCeEEEEEcCCCc-
Q 000177 1653 SPSD-TMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAG-NEVIINS-----EVWDLRKFRLLRSVPSLDQ- 1718 (1922)
Q Consensus 1653 SPdG-~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG-~~LASGS-----eIWDLrTgklL~tl~gH~~- 1718 (1922)
+|++ .+|++++ ++||+++++++.++.+|...+ +++|+|++ ++|++++ +|||++++++++.+ +|..
T Consensus 235 sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~ 313 (357)
T 4g56_B 235 HPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF 313 (357)
T ss_dssp CTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC
T ss_pred hhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC
Confidence 9986 5666655 899999999999999999998 99999997 5788888 59999999988765 5766
Q ss_pred -eeEEEcc-CCCEEEEEEc
Q 000177 1719 -TTITFNA-RGDVIYAILR 1735 (1922)
Q Consensus 1719 -~sVaFSP-dG~~LaSgs~ 1735 (1922)
++|+|+| ++.+|++++.
T Consensus 314 V~~vafsP~d~~~l~s~s~ 332 (357)
T 4g56_B 314 VTGVAWSPLDHSKFTTVGW 332 (357)
T ss_dssp EEEEEECSSSTTEEEEEET
T ss_pred EEEEEEeCCCCCEEEEEcC
Confidence 8999999 7999999863
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.5e-24 Score=256.74 Aligned_cols=229 Identities=14% Similarity=0.170 Sum_probs=179.8
Q ss_pred CceeeEEe-cCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC---CC---ceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1497 RFRPWRTC-RDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNS---SS---PLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1497 rfrpirtL-rgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~t---gk---~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
..+.+.++ .+|. +.|++++|+| ++++|++|+.||+|+|||+.+ +. ....+ +|...|+++ .|+|++++|
T Consensus 51 ~g~~~~~~~~~h~-~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~--~~~~~~~~l 126 (437)
T 3gre_A 51 RGKLIATLMENEP-NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQI--TMIPNFDAF 126 (437)
T ss_dssp CCCEEEEECTTTT-SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEE--EECTTSSEE
T ss_pred cceEEeeeccCCC-CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEE--EEeCCCCEE
Confidence 45667788 8899 9999999999 999999999999999999876 43 22333 599999999 889999999
Q ss_pred EEe-cCCcEEEeccCCC-CCCcceEeccc--eeEE----------------EcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1569 LSS-SSQDVHLWNASSI-AGGPMHSFEGC--KAAR----------------FSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1569 aSS-sDgtVkLWDl~t~-~gk~l~tf~gh--~sVa----------------FSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
+++ .|++|++||+... .++.+..+.++ ..+. |++++++|+++ +.|+.|++||+++++
T Consensus 127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~ 203 (437)
T 3gre_A 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL---TNLSRVIIFDIRTLE 203 (437)
T ss_dssp EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE---ETTSEEEEEETTTCC
T ss_pred EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE---eCCCeEEEEeCCCCe
Confidence 885 5999999999520 14444443322 2233 55679999999 889999999999999
Q ss_pred eeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeec-cCCCce-EEEEe----cCCCEEEE
Q 000177 1629 LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFD-QFTDHG-GGGFH----PAGNEVII 1697 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~-gh~~~V-sVaFS----PdG~~LAS 1697 (1922)
++.++..+ .+...+..++|+|++++|++++ ++||+++++++..+. .|...+ +++|+ |++.+|++
T Consensus 204 ~~~~~~~~-----~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s 278 (437)
T 3gre_A 204 RLQIIENS-----PRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG 278 (437)
T ss_dssp EEEEEECC-----GGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE
T ss_pred eeEEEccC-----CCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE
Confidence 99888610 0123445599999999999887 999999999999886 666677 88555 56889999
Q ss_pred Ee-----EEEecCCCeEEEEEcCCC----------------------------ceeEEEccCCCEEEEEEccCc
Q 000177 1698 NS-----EVWDLRKFRLLRSVPSLD----------------------------QTTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~gH~----------------------------~~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
++ +|||+++++++.++.+|. .++++|+ ++.+|+++..+..
T Consensus 279 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~ 351 (437)
T 3gre_A 279 GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSS 351 (437)
T ss_dssp ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE
T ss_pred EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCe
Confidence 98 599999999999888663 1578888 7788888854443
No 52
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=1e-23 Score=285.82 Aligned_cols=288 Identities=16% Similarity=0.240 Sum_probs=226.6
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEecc
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNA 1581 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl 1581 (1922)
++.+|. +.|++++|+|+|++|++|+.||+|+|||+.+++.+.++.+|...|+++ +|+|++++|+++ .|++|+|||+
T Consensus 610 ~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 610 VVRPHT-DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCC--AFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp EECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EECTTSSEEEEEETTSEEEEEET
T ss_pred EEeccc-ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEE--EEecCCCEEEEEeCCCeEEEEEC
Confidence 578999 999999999999999999999999999999999999999999999999 899999999995 5999999999
Q ss_pred CCCCCCcceEeccc----eeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1582 SSIAGGPMHSFEGC----KAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1582 ~t~~gk~l~tf~gh----~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
.+ ++++.++.+| ++++|+| ++.+++++ +.|++|++||+.+++++.++. ++...+..++|+|+
T Consensus 687 ~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg---~~d~~v~vwd~~~~~~~~~~~-------~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 687 AT--GKLVHTYDEHSEQVNCCHFTNKSNHLLLATG---SNDFFLKLWDLNQKECRNTMF-------GHTNSVNHCRFSPD 754 (1249)
T ss_dssp TT--CCEEEEEECCSSCEEEEEECSSSSCCEEEEE---ETTSCEEEEETTSSSEEEEEC-------CCSSCEEEEEECSS
T ss_pred CC--CceEEEEcCCCCcEEEEEEecCCCceEEEEE---eCCCeEEEEECCCcchhheec-------CCCCCEEEEEEecC
Confidence 98 8888888775 7899999 45678888 889999999999999988875 12333445999999
Q ss_pred CCeEeecc-----EEEEcCCCcceeeec----------------------------------------------------
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFD---------------------------------------------------- 1678 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~---------------------------------------------------- 1678 (1922)
++++++++ ++||+++++.+..+.
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 99999877 899988765443321
Q ss_pred ---cCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcc
Q 000177 1679 ---QFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHT 1747 (1922)
Q Consensus 1679 ---gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~ 1747 (1922)
+|...+ ++.|+|++.++++++ ++||+.++..+..+.+|.. ++++|+|+|.+|++++.+....+|.....
T Consensus 835 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~ 914 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKV 914 (1249)
T ss_dssp EECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHH
T ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccc
Confidence 455556 899999999999998 5999999999999999987 89999999999999876554333321100
Q ss_pred cc---------------------------------------------------ccc---------CCcceEEEEecCCCc
Q 000177 1748 RR---------------------------------------------------VKH---------PLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1748 rr---------------------------------------------------~ks---------p~~ssFrt~Da~dys 1767 (1922)
.. ..+ .....+++|+..+..
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 00 000 012234555555555
Q ss_pred eeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1768 DIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1768 ~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+..+.. ...|..++|+|++.++++.. .++.+++|++.
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~------~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADGKTLISSS------EDSVIQVWNWQ 1033 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSSSCEEEEC------SSSBEEEEETT
T ss_pred eeeecccCCCceEEEEECCCCCEEEEEc------CCCEEEEEECC
Confidence 5554443 45699999999999988663 24667888764
No 53
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.93 E-value=9e-24 Score=238.99 Aligned_cols=228 Identities=14% Similarity=0.194 Sum_probs=183.3
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC----ceeeeccCCCCeeEEEeeecC--CCcEEEEe-cCC
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS----PLESCTSHQAPVTLVQSHLSG--ETQLLLSS-SSQ 1574 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk----~l~tL~gHss~VtsLq~afSp--DG~lLaSS-sDg 1574 (1922)
+.+.+|. +.|++++|+|++++|++|+.||+|+|||+.++. ....+.+|...|+++ .|+| ++++|+++ .|+
T Consensus 5 ~~~~gH~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 5 PFDSGHD-DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI--DWASPEYGRIIASASYDK 81 (351)
T ss_dssp CEECCCS-SCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEE--EECCGGGCSEEEEEETTS
T ss_pred ccCcccc-cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEE--EEcCCCCCCEEEEEcCCC
Confidence 3467999 999999999999999999999999999998763 566778999999999 7888 68888885 599
Q ss_pred cEEEeccCCCCC-------CcceEeccc----eeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccc-----
Q 000177 1575 DVHLWNASSIAG-------GPMHSFEGC----KAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDT----- 1636 (1922)
Q Consensus 1575 tVkLWDl~t~~g-------k~l~tf~gh----~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~----- 1636 (1922)
+|++||+..... +++..+.+| .+++|+|+ +++|+++ +.|+.|++||+++++.+..+...
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACL---GNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEe---cCCCcEEEecCCChHHhccccccccccc
Confidence 999999987211 335556554 78999999 9999999 88999999999988866554310
Q ss_pred -cccccCCCCcceEEEEcCC---CCeEeecc-----EEEEcCCCcc--eeeeccCCCce-EEEEecCC----CEEEEEe-
Q 000177 1637 -SVNLTGRGHAYSQIHFSPS---DTMLLWNG-----ILWDRRNSVP--VHRFDQFTDHG-GGGFHPAG----NEVIINS- 1699 (1922)
Q Consensus 1637 -s~~~~~~gh~~~vVaFSPd---G~lLaSgg-----rLWDlrtgk~--I~kf~gh~~~V-sVaFSPdG----~~LASGS- 1699 (1922)
......+......++|+|+ +.++++++ .+|+...++. +..+.+|...+ +++|+|++ ++|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 1111123345566999997 88888777 5666666654 77888999888 99999998 8999998
Q ss_pred ----EEEecCCC----------------------------------------------eEEEEEcCCCc--eeEEEccCC
Q 000177 1700 ----EVWDLRKF----------------------------------------------RLLRSVPSLDQ--TTITFNARG 1727 (1922)
Q Consensus 1700 ----eIWDLrTg----------------------------------------------klL~tl~gH~~--~sVaFSPdG 1727 (1922)
++||++++ +++..+.+|.. ++++|+|+|
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 59999875 67788888866 899999999
Q ss_pred CEEEEEEc
Q 000177 1728 DVIYAILR 1735 (1922)
Q Consensus 1728 ~~LaSgs~ 1735 (1922)
++|+++..
T Consensus 319 ~~l~s~~~ 326 (351)
T 3f3f_A 319 TILSSAGD 326 (351)
T ss_dssp CCEEEEET
T ss_pred CEEEEecC
Confidence 99999853
No 54
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.92 E-value=2.3e-23 Score=248.21 Aligned_cols=264 Identities=10% Similarity=0.097 Sum_probs=202.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC-------cEEEEECCCCCce----------eeeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTK-------ELKIFDSNSSSPL----------ESCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DG-------tIkIWDl~tgk~l----------~tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
.+|+|++|+|||++|++|+.+. .|+||++..+... ..+.+|...|.++ ++ ++.+++++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~--~~--~~~~~~~g~ 90 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAI--DA--SKGIILVGC 90 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEE--EE--ETTEEEEEC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEE--Ee--CCCEEEEEE
Confidence 5899999999999999998654 4999999765421 2467899999998 55 45566653
Q ss_pred -----------cCCcEEEeccCCCCCCc--ceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1572 -----------SSQDVHLWNASSIAGGP--MHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1572 -----------sDgtVkLWDl~t~~gk~--l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
.|+++++|++....... +..... .++++|+|||+++++++ ++.|++|+|||+.++++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as-~~~d~~i~iwd~~~~~~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS-SKVPAIMRIIDPSDLTE 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE-SCSSCEEEEEETTTTEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE-CCCCCEEEEeECCCCcE
Confidence 26789999987621111 111111 26799999999987653 26799999999999999
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceee--eccCCCce-EEEEecCCCEEEEEe---
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHR--FDQFTDHG-GGGFHPAGNEVIINS--- 1699 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~k--f~gh~~~V-sVaFSPdG~~LASGS--- 1699 (1922)
+..+. +.+.+..++|+|+|+++++++ .+|+..+++.+.. ...|...+ +++|+|+|+++++++
T Consensus 170 ~~~~~--------~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~ 241 (365)
T 4h5i_A 170 KFEIE--------TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKK 241 (365)
T ss_dssp EEEEE--------CSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred EEEeC--------CCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence 88875 345567799999999999877 8888888876543 34566667 899999999999987
Q ss_pred ------EEEecCCCeE----EEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc
Q 000177 1700 ------EVWDLRKFRL----LRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1700 ------eIWDLrTgkl----L~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys 1767 (1922)
.+|++..... ...+.+|.. ++++|||+|++|++++ .+..+++||..+.+
T Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs-------------------~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS-------------------NDNSIALVKLKDLS 302 (365)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE-------------------TTSCEEEEETTTTE
T ss_pred cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc-------------------CCCEEEEEECCCCc
Confidence 3688876543 345667765 8999999999999995 23457889998988
Q ss_pred eeeeec-c-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1768 DIATIP-V-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1768 ~IaTid-v-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+.++. . ...|.+++|+|++++|+.. ..|.+||||++.
T Consensus 303 ~~~~~~~gH~~~V~~v~fSpdg~~laS~------S~D~tvrvw~ip 342 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISPDSTYVASV------SAANTIHIIKLP 342 (365)
T ss_dssp EEEEETTSSSSCEEEEEECTTSCEEEEE------ETTSEEEEEECC
T ss_pred EEEEecCcccCCEEEEEECCCCCEEEEE------eCCCeEEEEEcC
Confidence 888763 3 5679999999999999965 356899999984
No 55
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.92 E-value=1.5e-23 Score=246.60 Aligned_cols=220 Identities=14% Similarity=0.171 Sum_probs=173.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEec
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWD 1580 (1922)
..+|. ..|++++|+|+|++|++|+.|++|+||++.++. ++.++.+|...|+++ +|+|++++|+++ .|++|++||
T Consensus 57 ~~~h~-~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v--~~sp~~~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 57 SEGHQ-RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSV--AWAPSGNLLATCSRDKSVWVWE 133 (345)
T ss_dssp CSSCS-SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEE--EECTTSSEEEEEETTSCEEEEE
T ss_pred ccccC-CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEE--EEeCCCCEEEEEECCCeEEEEE
Confidence 36899 999999999999999999999999999998764 567889999999999 889999999995 599999999
Q ss_pred cCCCCC-CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce--eeeeccccccccCCCCcceEEEEc
Q 000177 1581 ASSIAG-GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1581 l~t~~g-k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
+..... .++..+.+| .+++|+|++++|+++ +.|++|++||+++++. ..++. ++...+..++|+
T Consensus 134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~---s~d~~i~~w~~~~~~~~~~~~~~-------~h~~~v~~l~~s 203 (345)
T 3fm0_A 134 VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA---SYDDTVKLYREEEDDWVCCATLE-------GHESTVWSLAFD 203 (345)
T ss_dssp ECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEE---ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEEC
T ss_pred CCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEE---eCCCcEEEEEecCCCEEEEEEec-------CCCCceEEEEEC
Confidence 986211 234455554 789999999999999 8899999999988753 34443 122334459999
Q ss_pred CCCCeEeecc-----EEEEcCCC---------------cceeeecc-CCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1654 PSDTMLLWNG-----ILWDRRNS---------------VPVHRFDQ-FTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtg---------------k~I~kf~g-h~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
|+|++|++++ ++||.... +++.++.+ |...+ +++|+|++..|++++ ++|+..+
T Consensus 204 p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 204 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 9999999887 99997532 23445555 66667 999999999999998 6999875
Q ss_pred Ce--------E-EEEEcCCCc--eeEEEccCCC-EEEEEEcc
Q 000177 1707 FR--------L-LRSVPSLDQ--TTITFNARGD-VIYAILRR 1736 (1922)
Q Consensus 1707 gk--------l-L~tl~gH~~--~sVaFSPdG~-~LaSgs~~ 1736 (1922)
.. . .+...+|.. ++|+|+|++. +|++++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~D 325 (345)
T 3fm0_A 284 NSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325 (345)
T ss_dssp TSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCC
Confidence 42 1 222346765 8999999985 88888543
No 56
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.92 E-value=2.2e-24 Score=250.62 Aligned_cols=222 Identities=14% Similarity=0.216 Sum_probs=170.2
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecC--CCcEEEE-ecCCcEE
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSG--ETQLLLS-SSSQDVH 1577 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSp--DG~lLaS-SsDgtVk 1577 (1922)
++.+|. +.|++++|+|+|++|++|+.|++|+|||+.++. .+.++.+|..+|+++ +|++ ++++|++ +.|++|+
T Consensus 8 ~~~~H~-~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v--~~~~~~~~~~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHE-DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV--AWAHPMYGNILASCSYDRKVI 84 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEE--EECCGGGSSCEEEEETTSCEE
T ss_pred eccccc-CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEE--EeCCCCCCCEEEEEECCCEEE
Confidence 457899 999999999999999999999999999998775 467889999999999 7765 4788888 4699999
Q ss_pred EeccCCCCCCcceEeccc----eeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--ceE
Q 000177 1578 LWNASSIAGGPMHSFEGC----KAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--YSQ 1649 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~gh----~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~~v 1649 (1922)
|||+++....++..+.+| ++++|+|+ +.+|+++ +.|++|++||++++....... ...+|. ...
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg---s~D~~i~lwd~~~~~~~~~~~------~~~~h~~~v~~ 155 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG---SSDGAISLLTYTGEGQWEVKK------INNAHTIGCNA 155 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEE---CSSSCEEEEEECSSSCEEECC------BTTSSSSCBCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEE---cCCCCEEEEecCCCCCcceee------eeccccCCcce
Confidence 999987222345666654 78999997 7899999 889999999998764321111 112344 344
Q ss_pred EEEcCC-----------------CCeEeecc-----EEEEcCCC---cceeeeccCCCce-EEEEecCC----CEEEEEe
Q 000177 1650 IHFSPS-----------------DTMLLWNG-----ILWDRRNS---VPVHRFDQFTDHG-GGGFHPAG----NEVIINS 1699 (1922)
Q Consensus 1650 VaFSPd-----------------G~lLaSgg-----rLWDlrtg---k~I~kf~gh~~~V-sVaFSPdG----~~LASGS 1699 (1922)
++|+|+ +++|++++ ++||++.+ +++..+.+|...| +++|+|++ .+|++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 156 VSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp CEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred EEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 899997 46888877 89999865 4678899999999 99999997 8899998
Q ss_pred -----EEEecCCC---e-EEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1700 -----EVWDLRKF---R-LLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1700 -----eIWDLrTg---k-lL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
+|||+.+. . ....+..|.. ++++|+|+|++|+++..+
T Consensus 236 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D 283 (316)
T 3bg1_A 236 QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGD 283 (316)
T ss_dssp TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESS
T ss_pred CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCC
Confidence 59999762 1 1223344544 899999999999998643
No 57
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=3.8e-23 Score=241.66 Aligned_cols=280 Identities=13% Similarity=0.108 Sum_probs=213.6
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeec-------------cCCCCeeEEEee
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCT-------------SHQAPVTLVQSH 1560 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~-------------gHss~VtsLq~a 1560 (1922)
+...+....+++|. +.|++++|+| ++++|++|+.||.|+|||+.+++....+. +|...|+++ .
T Consensus 30 ~~~~~~~~~~~~h~-~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 106 (408)
T 4a11_B 30 LELNKDRDVERIHG-GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV--Q 106 (408)
T ss_dssp EEECTTEEECCCCS-SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE--E
T ss_pred cccCcceeeeeccC-CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE--E
Confidence 33445567788999 9999999999 99999999999999999999887765553 699999999 8
Q ss_pred ecC-CCcEEEEe-cCCcEEEeccCCCCCCcceEecc---ceeEEEcCC---CCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1561 LSG-ETQLLLSS-SSQDVHLWNASSIAGGPMHSFEG---CKAARFSNS---GNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1561 fSp-DG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPD---G~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
|+| ++.+|+++ .|+.|++||+.+ ++++..+.. ..++.|+|. +.+++++ +.|+.|++||+++++.+..
T Consensus 107 ~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~d~~~~~~~~~ 181 (408)
T 4a11_B 107 WYPHDTGMFTSSSFDKTLKVWDTNT--LQTADVFNFEETVYSHHMSPVSTKHCLVAVG---TRGPKVQLCDLKSGSCSHI 181 (408)
T ss_dssp ECTTCTTCEEEEETTSEEEEEETTT--TEEEEEEECSSCEEEEEECSSCSSCCEEEEE---ESSSSEEEEESSSSCCCEE
T ss_pred EccCCCcEEEEEeCCCeEEEeeCCC--CccceeccCCCceeeeEeecCCCCCcEEEEE---cCCCeEEEEeCCCcceeee
Confidence 899 67777775 599999999987 666655543 377888884 4589998 7889999999999988887
Q ss_pred eccccccccCCCCcceEEEEcCCCCe-Eeecc-----EEEEcCCCc-ceeee---------------ccCCCce-EEEEe
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSDTM-LLWNG-----ILWDRRNSV-PVHRF---------------DQFTDHG-GGGFH 1689 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG~l-LaSgg-----rLWDlrtgk-~I~kf---------------~gh~~~V-sVaFS 1689 (1922)
+. .+...+..++|+|++++ +++++ ++||++++. ++..+ ..|...+ +++|+
T Consensus 182 ~~-------~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 182 LQ-------GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp EC-------CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred ec-------CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 75 12334455999999985 66665 999999775 44444 4667777 99999
Q ss_pred cCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--------eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcc
Q 000177 1690 PAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--------TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFA 1756 (1922)
Q Consensus 1690 PdG~~LASGS-----eIWDLrTgklL~tl~gH~~--------~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~s 1756 (1922)
|+|++|++++ .+||+++++.+..+.++.. ..+.+.+.+.+++++ ...
T Consensus 255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 314 (408)
T 4a11_B 255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP--------------------YGS 314 (408)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE--------------------ETT
T ss_pred CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe--------------------cCC
Confidence 9999999998 5999999877655443221 233333344444444 224
Q ss_pred eEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecCCCC
Q 000177 1757 AFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGRRRP 1815 (1922)
Q Consensus 1757 sFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr~r~ 1815 (1922)
.+++|+..+...+..+.. ...|..++|+|++.++++.. .++.+++|++.....
T Consensus 315 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 315 TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS------RDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE------TTSCEEEEEECC---
T ss_pred EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC------CCCeEEEEeCCCCCc
Confidence 577888888888888774 56799999999999988663 347899999866543
No 58
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.92 E-value=1.8e-23 Score=237.93 Aligned_cols=266 Identities=14% Similarity=0.185 Sum_probs=210.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC-CCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA-GGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~-gk~ 1588 (1922)
+.|.+++|+|||++++++..++.+.+|............+|...|+++ .|+|++++|++++|+.|++||+.+.. ...
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAV--TISNPTRHVYTGGKGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEE--EECSSSSEEEEECBSEEEEEETTSTTCCSC
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEE--EEecCCcEEEEcCCCeEEEEECCCCCceee
Confidence 679999999999999999988888777665554445556899999999 88999999999889999999998621 112
Q ss_pred ceEec--c----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc--eeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1589 MHSFE--G----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ--LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1589 l~tf~--g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk--~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
+..+. + +.+++|+|++++|+++ +.|+.|++||+.+++ ....+. .+......++|+|++++++
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~~~d~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~ 157 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVG---GEASTLSIWDLAAPTPRIKAELT-------SSAPACYALAISPDSKVCF 157 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEE---ESSSEEEEEECCCC--EEEEEEE-------CSSSCEEEEEECTTSSEEE
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEE---cCCCcEEEEECCCCCcceeeecc-------cCCCceEEEEECCCCCEEE
Confidence 33332 2 4889999999999998 788999999999887 333343 1223345599999999999
Q ss_pred ecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-eeEEEccCCC
Q 000177 1661 WNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGD 1728 (1922)
Q Consensus 1661 Sgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~ 1728 (1922)
+++ ++||+++++++..+..|...+ ++.|+|++++|++++ .+||+++++.+..+..... .+++|+|+|+
T Consensus 158 ~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~ 237 (337)
T 1gxr_A 158 SCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE 237 (337)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS
T ss_pred EEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCC
Confidence 876 999999999999999999888 999999999999998 5999999999888764333 8999999999
Q ss_pred EEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEE
Q 000177 1729 VIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIY 1808 (1922)
Q Consensus 1729 ~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLy 1808 (1922)
+|+++..+ ..+++|+..+............|..++|+|++.++++.. .++.+++|
T Consensus 238 ~l~~~~~~-------------------~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~~ 292 (337)
T 1gxr_A 238 WLAVGMES-------------------SNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG------KDNLLNAW 292 (337)
T ss_dssp EEEEEETT-------------------SCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEE------TTSEEEEE
T ss_pred EEEEEcCC-------------------CcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEec------CCCcEEEE
Confidence 99998532 235566655555444444567799999999999988664 24689999
Q ss_pred EecC
Q 000177 1809 EIGR 1812 (1922)
Q Consensus 1809 EVGr 1812 (1922)
++..
T Consensus 293 ~~~~ 296 (337)
T 1gxr_A 293 RTPY 296 (337)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 8743
No 59
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.5e-23 Score=245.07 Aligned_cols=238 Identities=13% Similarity=0.132 Sum_probs=175.9
Q ss_pred cCCccccccceeeecCceeeEEe-cC-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CCceeeeccCCC
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTC-RD-DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-------SSPLESCTSHQA 1552 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtL-rg-H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-------gk~l~tL~gHss 1552 (1922)
++.++..+.+.+....+..+.++ .+ |. ..|++++|+|++++|++|+.|++|+|||+.. .+++.++.+|..
T Consensus 30 ~~~D~~i~lw~~~~~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~ 108 (330)
T 2hes_X 30 GSTDRKIKLVSVKYDDFTLIDVLDETAHK-KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHEN 108 (330)
T ss_dssp EESSSCEEEEECSSSCCEEEEEECTTCCC-SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----
T ss_pred EcCCCEEEEEEecCCCeEEEEEEecCCcc-CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCC
Confidence 34444444444433345566667 45 99 9999999999999999999999999999853 345677899999
Q ss_pred CeeEEEeeecCCCcEEEEe-cCCcEEEeccCCC--CCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1553 PVTLVQSHLSGETQLLLSS-SSQDVHLWNASSI--AGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~--~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
.|+++ +|+|++++|+++ .|++|+|||+... ..+++..+.+| ++++|+|++++|+++ +.|++|++||+.
T Consensus 109 ~V~~v--~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~---s~D~~i~iW~~~ 183 (330)
T 2hes_X 109 EVKGV--AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS---SYDDTVRIWKDY 183 (330)
T ss_dssp CEEEE--EECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEE---ETTSCEEEEEEE
T ss_pred cEEEE--EECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEE---cCCCeEEEEECC
Confidence 99999 899999999995 5999999999531 12345666665 789999999999999 889999999998
Q ss_pred CC--ceeeeeccccccccCCCCcc--eEEEEcCC--CCeEeecc-----EEEEcCCC--------cceeeecc-CCCce-
Q 000177 1626 TY--QLEAKLSDTSVNLTGRGHAY--SQIHFSPS--DTMLLWNG-----ILWDRRNS--------VPVHRFDQ-FTDHG- 1684 (1922)
Q Consensus 1626 Tg--k~i~tL~d~s~~~~~~gh~~--~vVaFSPd--G~lLaSgg-----rLWDlrtg--------k~I~kf~g-h~~~V- 1684 (1922)
++ +++.++. +|.. ..++|+|+ +.+|++++ ++||++.+ .++..+.+ |...+
T Consensus 184 ~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 254 (330)
T 2hes_X 184 DDDWECVAVLN---------GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVY 254 (330)
T ss_dssp TTEEEEEEEEC---------CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEE
T ss_pred CCCeeEEEEcc---------CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceE
Confidence 76 5566664 4544 44999999 67888876 99999865 34555655 77778
Q ss_pred EEEEecCCCEEEEEe-----EEEecCCCe--EEEEE-cCCCc---eeEEEcc--CCCEEEEEEc
Q 000177 1685 GGGFHPAGNEVIINS-----EVWDLRKFR--LLRSV-PSLDQ---TTITFNA--RGDVIYAILR 1735 (1922)
Q Consensus 1685 sVaFSPdG~~LASGS-----eIWDLrTgk--lL~tl-~gH~~---~sVaFSP--dG~~LaSgs~ 1735 (1922)
+++|++++ +|++++ +|||..+++ .+... .+|.. ++++|+| ++++|++++.
T Consensus 255 ~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 255 NVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred EEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence 99999776 677777 699998874 34333 45653 7999999 6889998853
No 60
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.92 E-value=2e-23 Score=267.87 Aligned_cols=219 Identities=18% Similarity=0.335 Sum_probs=186.4
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVk 1577 (1922)
...+.+.+|. ..|++++|+|+|++|++|+.||+|+|||+.+++....+.+|...|+++ +|+|++++|+++ .|++|+
T Consensus 421 ~~~~~~~~h~-~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~--~~s~~~~~l~s~s~D~~i~ 497 (694)
T 3dm0_A 421 VAQRRLTGHS-HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSV--AFSLDNRQIVSASRDRTIK 497 (694)
T ss_dssp EEEEEEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EECTTSSCEEEEETTSCEE
T ss_pred cccceecCCC-CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEE--EEeCCCCEEEEEeCCCEEE
Confidence 3456789999 999999999999999999999999999999999999999999999999 889999999885 699999
Q ss_pred EeccCCCCCCcceEe----cc----ceeEEEcCCC--CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-
Q 000177 1578 LWNASSIAGGPMHSF----EG----CKAARFSNSG--NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA- 1646 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf----~g----h~sVaFSPDG--~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~- 1646 (1922)
|||+.. .+...+ .+ +.+++|+|++ ..|+++ +.|++|++||++++++..++. +|.
T Consensus 498 iwd~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~---s~d~~v~vwd~~~~~~~~~~~---------~h~~ 562 (694)
T 3dm0_A 498 LWNTLG---ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA---SWDKTVKVWNLSNCKLRSTLA---------GHTG 562 (694)
T ss_dssp EECTTS---CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE---ETTSCEEEEETTTCCEEEEEC---------CCSS
T ss_pred EEECCC---CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE---eCCCeEEEEECCCCcEEEEEc---------CCCC
Confidence 999864 233332 22 3789999986 578998 889999999999998888775 454
Q ss_pred -ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEcCC
Q 000177 1647 -YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1647 -~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH 1716 (1922)
+..++|+|++++|++++ ++||+++++++..+..+....+++|+|++.+|++++ +|||+++++++..+..+
T Consensus 563 ~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~ 642 (694)
T 3dm0_A 563 YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC
T ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccc
Confidence 44599999999999887 999999999988887654433999999999999887 69999999998877532
Q ss_pred C---------------------ceeEEEccCCCEEEEEEc
Q 000177 1717 D---------------------QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1717 ~---------------------~~sVaFSPdG~~LaSgs~ 1735 (1922)
. .++++|||+|++|++++.
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~ 682 (694)
T 3dm0_A 643 LKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682 (694)
T ss_dssp CC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence 1 157899999999999963
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.92 E-value=4.9e-23 Score=265.45 Aligned_cols=230 Identities=17% Similarity=0.304 Sum_probs=199.4
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
+.|.+...+.++++.+|. +.|++++|+|++++|++|+.||.|+|||+.+++.+.++.+|...|+++ .|+|++++|++
T Consensus 38 ~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~l~~ 114 (814)
T 3mkq_A 38 EIWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI--AVHPTKPYVLS 114 (814)
T ss_dssp EEEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSSSEEEE
T ss_pred EEEECCCCceEEEEecCC-CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEE--EEeCCCCEEEE
Confidence 344456788889999999 999999999999999999999999999999999999999999999999 89999999988
Q ss_pred e-cCCcEEEeccCCCCC-CcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1571 S-SSQDVHLWNASSIAG-GPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~g-k~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+ .|++|++||+.+ + .....+.+| .+++|+| +++.|+++ +.|++|++||+.++.....+. ..+
T Consensus 115 ~~~dg~i~vw~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~---~~dg~v~vwd~~~~~~~~~~~------~~~ 183 (814)
T 3mkq_A 115 GSDDLTVKLWNWEN--NWALEQTFEGHEHFVMCVAFNPKDPSTFASG---CLDRTVKVWSLGQSTPNFTLT------TGQ 183 (814)
T ss_dssp EETTSEEEEEEGGG--TSEEEEEEECCSSCEEEEEEETTEEEEEEEE---ETTSEEEEEETTCSSCSEEEE------CCC
T ss_pred EcCCCEEEEEECCC--CceEEEEEcCCCCcEEEEEEEcCCCCEEEEE---eCCCeEEEEECCCCcceeEEe------cCC
Confidence 5 599999999987 4 455666554 7899999 88899998 889999999999888777665 112
Q ss_pred CCcceEEEEcC--CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1644 GHAYSQIHFSP--SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1644 gh~~~vVaFSP--dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
......++|+| ++.++++++ ++||+++++++..+.+|...+ +++|+|+|.+|++++ ++||+.+++.+
T Consensus 184 ~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 24456699999 999999877 899999999999999999888 999999999999998 59999999999
Q ss_pred EEEcCCCc--eeEEEccCCC--EEEEEE
Q 000177 1711 RSVPSLDQ--TTITFNARGD--VIYAIL 1734 (1922)
Q Consensus 1711 ~tl~gH~~--~sVaFSPdG~--~LaSgs 1734 (1922)
.++..+.. ++++|+|+|. +++++.
T Consensus 264 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 264 KTLNVGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp EEECCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred EEeecCCCcEEEEEEccCCCceEEEEEe
Confidence 99987755 8999999997 455553
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.92 E-value=1.6e-22 Score=244.32 Aligned_cols=265 Identities=10% Similarity=0.128 Sum_probs=214.1
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
+.|.....+.+.++.+|. +.|++++|+|++ +|++|+.||+|++||+.+++++.++.+|...|+++.|.+++++.+|++
T Consensus 145 ~vwd~~~~~~~~~~~~h~-~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 145 RVYDSINKKFLLQLSGHD-GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp EEEETTTTEEEEEECCCS-SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred EEEECCCCcEEEEEeCCC-cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence 344456788899999999 999999999988 999999999999999999999999999999999996655578888888
Q ss_pred e-cCCcEEEeccCCCCCCc-----------------------ceEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEEC
Q 000177 1571 S-SSQDVHLWNASSIAGGP-----------------------MHSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDI 1624 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~-----------------------l~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDl 1624 (1922)
+ .|++|++||+.+ ... +..+.+| ....+++++++++++ +.|+.|++||+
T Consensus 223 ~s~d~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~---~~d~~i~vwd~ 297 (464)
T 3v7d_B 223 GSRDNTLHVWKLPK--ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG---SYDNTLIVWDV 297 (464)
T ss_dssp EETTSCEEEEECCC--CCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEE---ETTSCEEEEET
T ss_pred EcCCCcEEEeeCCC--CcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEE---eCCCeEEEEEC
Confidence 5 599999999987 322 2334444 334567889999999 88999999999
Q ss_pred CCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEE
Q 000177 1625 QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1625 rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASG 1698 (1922)
++++++..+. .+......++|+|+++++++++ ++||+++++++.++.+|...+ ++.|+ +.+|+++
T Consensus 298 ~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 368 (464)
T 3v7d_B 298 AQMKCLYILS-------GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA 368 (464)
T ss_dssp TTTEEEEEEC-------CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEE
T ss_pred CCCcEEEEec-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEE
Confidence 9999988875 1223344599999999999887 999999999999999999988 88887 5899998
Q ss_pred e-----EEEecCCCeEEEEEcCC-CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee
Q 000177 1699 S-----EVWDLRKFRLLRSVPSL-DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI 1772 (1922)
Q Consensus 1699 S-----eIWDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi 1772 (1922)
+ ++||++++.....+... ....++|+|++.+++++. +..+++|+..+.+.+...
T Consensus 369 s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------------dg~i~iwd~~~g~~~~~~ 428 (464)
T 3v7d_B 369 AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--------------------ENQFNIYNLRSGKLVHAN 428 (464)
T ss_dssp ETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--------------------TTEEEEEETTTCCEEESC
T ss_pred eCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec--------------------CCeEEEEECCCCcEEehh
Confidence 8 59999998877666532 237889999999999984 134677887777777652
Q ss_pred --ccCCceEEEEEcCCCceEEEE
Q 000177 1773 --PVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1773 --dvkr~I~dLa~SPdds~LAVV 1793 (1922)
.....|.+++|+ +..+++.
T Consensus 429 ~~~~~~~v~~v~~~--~~~l~~~ 449 (464)
T 3v7d_B 429 ILKDADQIWSVNFK--GKTLVAA 449 (464)
T ss_dssp TTTTCSEEEEEEEE--TTEEEEE
T ss_pred hccCCCcEEEEEec--CCEEEEE
Confidence 335569999997 4445444
No 63
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=2.5e-22 Score=272.20 Aligned_cols=308 Identities=17% Similarity=0.239 Sum_probs=230.9
Q ss_pred cceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC--CCcE
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG--ETQL 1567 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp--DG~l 1567 (1922)
.+.|...+.+.+.++.+|. +.|++++|+|+|++|++|+.||+|+|||+.+++.+.++.+|...|+++ .|+| ++.+
T Consensus 639 i~vw~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~ 715 (1249)
T 3sfz_A 639 LQVFKAETGEKLLDIKAHE-DEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC--HFTNKSNHLL 715 (1249)
T ss_dssp EEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE--EECSSSSCCE
T ss_pred EEEEECCCCCEEEEeccCC-CCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEE--EEecCCCceE
Confidence 3444557788899999999 999999999999999999999999999999999999999999999999 7787 5567
Q ss_pred EEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccc----
Q 000177 1568 LLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSV---- 1638 (1922)
Q Consensus 1568 LaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~---- 1638 (1922)
++++ .|++|++||+.+ ++++.++.+| ++++|+|++++|+++ +.|++|++||+.+++....+.....
T Consensus 716 l~sg~~d~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~sp~~~~l~s~---s~dg~v~vwd~~~~~~~~~~~~~~~~~~~ 790 (1249)
T 3sfz_A 716 LATGSNDFFLKLWDLNQ--KECRNTMFGHTNSVNHCRFSPDDELLASC---SADGTLRLWDVRSANERKSINVKRFFLSS 790 (1249)
T ss_dssp EEEEETTSCEEEEETTS--SSEEEEECCCSSCEEEEEECSSTTEEEEE---ESSSEEEEEEGGGTEEEEEEECCCCC---
T ss_pred EEEEeCCCeEEEEECCC--cchhheecCCCCCEEEEEEecCCCEEEEE---ECCCeEEEEeCCCCcccceeccccccccc
Confidence 7774 699999999998 7888888775 789999999999999 8899999999998877665431100
Q ss_pred --------------------------------------------cccCCCCcceEEEEcCCCCeEeecc-----EEEEcC
Q 000177 1639 --------------------------------------------NLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRR 1669 (1922)
Q Consensus 1639 --------------------------------------------~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlr 1669 (1922)
....+......++|+|+++++++++ ++||+.
T Consensus 791 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 791 EDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870 (1249)
T ss_dssp -----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred CCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence 0001223344589999999999877 899999
Q ss_pred CCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe-----------------------------------
Q 000177 1670 NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR----------------------------------- 1708 (1922)
Q Consensus 1670 tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk----------------------------------- 1708 (1922)
+++.+..+.+|...+ +++|+|+|++|++++ ++||+.+..
T Consensus 871 ~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred CCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 999999999999998 999999999999998 599975310
Q ss_pred ----EEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhh----------ccccc-------------ccCCcceEEEE
Q 000177 1709 ----LLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAV----------HTRRV-------------KHPLFAAFRTV 1761 (1922)
Q Consensus 1709 ----lL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~l----------h~rr~-------------ksp~~ssFrt~ 1761 (1922)
.+.........+++|+|+|++++++..+....++... |...+ ....+..+++|
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 0001111223688999999999988654332222110 00000 00123456677
Q ss_pred ecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1762 DAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1762 Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+..+...+........|..++|+|++.+++.. .++.+++|++..
T Consensus 1031 d~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-------~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1031 NWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS-------FDGTVKVWNVIT 1074 (1249)
T ss_dssp ETTTTEEECCBCCSSCEEEEEECSSSEEEEEE-------SSSEEEEEETTT
T ss_pred ECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-------CCCcEEEEECCC
Confidence 76666555555556779999999977654432 346799998754
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.91 E-value=8.1e-24 Score=250.87 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=204.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l 1589 (1922)
.+++++|+|+|++|++|+.||.|++||+.+++....+.+| .+..+. .|++++++|+++ .|+.|++||+.+ ++++
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~ 132 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVD-TAKLQMRRFILGTTEGDIKVLDSNF--NLQR 132 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEE-EECSSSCEEEEEETTSCEEEECTTS--CEEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEE-EEecCCCEEEEEECCCCEEEEeCCC--ccee
Confidence 3558999999999999999999999999988887777777 444443 689999999985 599999999987 6666
Q ss_pred eEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1590 HSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1590 ~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
..+.+| ++++|+|++++|+++ +.|++|++||+.+++.+..+. .+...+..++|+|++++|++++
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~---s~d~~i~iwd~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~l~s~~~d 202 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISS---SQDMQLKIWSVKDGSNPRTLI-------GHRATVTDIAIIDRGRNVLSASLD 202 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEE---ETTSEEEEEETTTCCCCEEEE-------CCSSCEEEEEEETTTTEEEEEETT
T ss_pred eecccccCccEEEEECCCCCEEEEE---eCCCeEEEEeCCCCcCceEEc-------CCCCcEEEEEEcCCCCEEEEEcCC
Confidence 766654 889999999999999 889999999999999888875 1223344599999999999877
Q ss_pred ---EEEEcCCCcceeeeccCC---Cce----------------------EEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1664 ---ILWDRRNSVPVHRFDQFT---DHG----------------------GGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1664 ---rLWDlrtgk~I~kf~gh~---~~V----------------------sVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
++||+++++++..+..+. ..+ +++|+|+|++|++++ ++||+++++.+
T Consensus 203 ~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 899999999999887542 222 345689999999998 59999999988
Q ss_pred EEEcC-CCc--eeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc-eeeeecc--CCceEEEEE
Q 000177 1711 RSVPS-LDQ--TTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS-DIATIPV--DRCVLDFAT 1783 (1922)
Q Consensus 1711 ~tl~g-H~~--~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys-~IaTidv--kr~I~dLa~ 1783 (1922)
..+.. |.. ++++|+|+|. +|+++.. +..+++||..+.. .+..+.. ...|..+.+
T Consensus 283 ~~~~~~~~~~v~~~~~~~~~~~~l~~g~~-------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~ 343 (420)
T 3vl1_A 283 IQLPSKFTCSCNSLTVDGNNANYIYAGYE-------------------NGMLAQWDLRSPECPVGEFLINEGTPINNVYF 343 (420)
T ss_dssp EEECCTTSSCEEEEEECSSCTTEEEEEET-------------------TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE
T ss_pred EEcccccCCCceeEEEeCCCCCEEEEEeC-------------------CCeEEEEEcCCCcCchhhhhccCCCCceEEEe
Confidence 88764 443 8999999999 8888853 2346677766543 3455543 445777755
Q ss_pred cCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1784 ERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1784 SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+++.++++. ..++.+++|++..
T Consensus 344 -~~~~~l~s~------~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 344 -AAGALFVSS------GFDTSIKLDIISD 365 (420)
T ss_dssp -ETTEEEEEE------TTTEEEEEEEECC
T ss_pred -CCCCEEEEe------cCCccEEEEeccC
Confidence 567777654 2457899999865
No 65
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.91 E-value=8.6e-23 Score=234.78 Aligned_cols=266 Identities=11% Similarity=0.141 Sum_probs=204.0
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCC-CCce-eeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGD---SSHIAVGSHTKELKIFDSNS-SSPL-ESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPD---G~lLASGS~DGtIkIWDl~t-gk~l-~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
...+++++.+.+|. +.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|+++ .|+|++++|+
T Consensus 26 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~ 102 (368)
T 3mmy_A 26 HNPMKDIEVTSSPD-DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDV--CWSDDGSKVF 102 (368)
T ss_dssp SCTTCCEECSSCCS-SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEE--EECTTSSEEE
T ss_pred CCCcceeEeccCCC-CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEE--EECcCCCEEE
Confidence 34567788899999 99999999999 69999999999999999987 5555 6789999999999 8899999999
Q ss_pred Ee-cCCcEEEeccCCCCCCcceEec---cceeEEE--cCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1570 SS-SSQDVHLWNASSIAGGPMHSFE---GCKAARF--SNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1570 SS-sDgtVkLWDl~t~~gk~l~tf~---gh~sVaF--SPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
++ .|++|++||+.+ ++++.... .+++++| +|++++|+++ +.|+.|++||+++++.+..+.
T Consensus 103 s~~~dg~v~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~~~~~--------- 168 (368)
T 3mmy_A 103 TASCDKTAKMWDLSS--NQAIQIAQHDAPVKTIHWIKAPNYSCVMTG---SWDKTLKFWDTRSSNPMMVLQ--------- 168 (368)
T ss_dssp EEETTSEEEEEETTT--TEEEEEEECSSCEEEEEEEECSSCEEEEEE---ETTSEEEEECSSCSSCSEEEE---------
T ss_pred EEcCCCcEEEEEcCC--CCceeeccccCceEEEEEEeCCCCCEEEEc---cCCCcEEEEECCCCcEEEEEe---------
Confidence 85 599999999987 55544332 2488999 8899999999 889999999999999888876
Q ss_pred CCcceEEEEcCCCCeEeecc-----EEEEcCCCccee-eecc-CCCce-EEEEecCCCE----EEEEe-----EEEecCC
Q 000177 1644 GHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVH-RFDQ-FTDHG-GGGFHPAGNE----VIINS-----EVWDLRK 1706 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~-kf~g-h~~~V-sVaFSPdG~~----LASGS-----eIWDLrT 1706 (1922)
.+. .+.++.+....+++++ .+||++...... .+.. +.... ++.+.+++.. +++++ ++||+++
T Consensus 169 ~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 169 LPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp CSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred cCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 222 3333333344444333 999998765332 2222 22223 5666655544 88887 5999998
Q ss_pred C---eEEEEEcCCC--------------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee
Q 000177 1707 F---RLLRSVPSLD--------------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI 1769 (1922)
Q Consensus 1707 g---klL~tl~gH~--------------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I 1769 (1922)
. ..+..+.+|. .++++|+|+|++|+++.. +..+++||..+...+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-------------------dg~i~iwd~~~~~~~ 308 (368)
T 3mmy_A 248 PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-------------------DGRFSFWDKDARTKL 308 (368)
T ss_dssp SCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-------------------TSCEEEEETTTTEEE
T ss_pred CCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc-------------------CCeEEEEECCCCcEE
Confidence 7 5667777764 479999999999999852 345778888888877
Q ss_pred eeecc-CCceEEEEEcCCCceEEEEecCC
Q 000177 1770 ATIPV-DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1770 aTidv-kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
.++.. ...|.+++|+|++.++++...++
T Consensus 309 ~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 309 KTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp EECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred EEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 77765 56799999999999999886544
No 66
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=6.5e-23 Score=235.45 Aligned_cols=256 Identities=11% Similarity=0.057 Sum_probs=205.0
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceeeeccCCCCeeEEEeeecCCCc-EEEEe-cCCc
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---PLESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQD 1575 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---~l~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgt 1575 (1922)
+....+|. +.|++++|+|++++|++|+.||.|+||++.+++ ....+.+|...|+++ .|+|+++ +|+++ .|+.
T Consensus 4 ~~~~~~h~-~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~l~~~~~dg~ 80 (342)
T 1yfq_A 4 VQIEQAPK-DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC--NFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EECSSCCS-SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEE--EEEESSSEEEEEEETTSC
T ss_pred eecccCCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEE--EECCCCCcEEEEEcCCCe
Confidence 34456899 999999999999999999999999999998877 345567899999999 8899999 88875 5999
Q ss_pred EEEecc-CCCCCCcceEecc--c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC---------Cceeeeecccccc
Q 000177 1576 VHLWNA-SSIAGGPMHSFEG--C----KAARFSNSGNLFAALPTETSDRGILLYDIQT---------YQLEAKLSDTSVN 1639 (1922)
Q Consensus 1576 VkLWDl-~t~~gk~l~tf~g--h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT---------gk~i~tL~d~s~~ 1639 (1922)
|++||+ .+ +. ...+.+ | ++++|+| +++|+++ +.|+.|++||+++ ++++.++.
T Consensus 81 i~~wd~~~~--~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----- 148 (342)
T 1yfq_A 81 ILKVDLIGS--PS-FQALTNNEANLGICRICKYG-DDKLIAA---SWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----- 148 (342)
T ss_dssp EEEECSSSS--SS-EEECBSCCCCSCEEEEEEET-TTEEEEE---ETTSEEEEECHHHHTTBCEEEEESCSSSSS-----
T ss_pred EEEEEeccC--Cc-eEeccccCCCCceEEEEeCC-CCEEEEE---cCCCeEEEEcccccccccccccCCeeeEEe-----
Confidence 999999 76 33 355555 4 7899999 9999999 8899999999997 66655543
Q ss_pred ccCCCCcceEEEEcCCCCeEeecc-----EEEEcCC-Ccc--eeeeccCCCce-EEEEec-CCCEEEEEe-----EEEec
Q 000177 1640 LTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRN-SVP--VHRFDQFTDHG-GGGFHP-AGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrt-gk~--I~kf~gh~~~V-sVaFSP-dG~~LASGS-----eIWDL 1704 (1922)
+......++|+|++ +++++ ++||+++ +.. ......+...+ ++.|+| +++++++++ ++|++
T Consensus 149 ---~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~ 223 (342)
T 1yfq_A 149 ---VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF 223 (342)
T ss_dssp ---SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred ---eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence 33445569999988 55444 9999998 653 23344566667 999999 999999998 59999
Q ss_pred CCC------eEEEEEcCC-----------CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc
Q 000177 1705 RKF------RLLRSVPSL-----------DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1705 rTg------klL~tl~gH-----------~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys 1767 (1922)
+.. +.+..+..| ..++++|+|+|++|+++.. +..+++||..+.+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------------------dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 224 DDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-------------------DGIISCWNLQTRK 284 (342)
T ss_dssp CTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-------------------TSCEEEEETTTTE
T ss_pred cCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-------------------CceEEEEcCccHh
Confidence 887 778888877 3479999999999999852 2357788888888
Q ss_pred eeeeecc--CCceEEEEEcCCCceEEEEecCC
Q 000177 1768 DIATIPV--DRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1768 ~IaTidv--kr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
.+.++.. ...|..++ |++.++++...+.
T Consensus 285 ~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 285 KIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp EEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred HhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 8877765 45688988 9999998876444
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.91 E-value=8.3e-23 Score=234.96 Aligned_cols=215 Identities=16% Similarity=0.304 Sum_probs=180.3
Q ss_pred CCCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCC-ceeeeccCCCCeeEEEe----eecCCCcEEEEe-cCCcE
Q 000177 1506 DDAGALLTCITFLGD---SSHIAVGSHTKELKIFDSNSSS-PLESCTSHQAPVTLVQS----HLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPD---G~lLASGS~DGtIkIWDl~tgk-~l~tL~gHss~VtsLq~----afSpDG~lLaSS-sDgtV 1576 (1922)
+|. ..|++++|+|+ |++|++|+.||.|++||+.+++ .+..+.+|...|+++.| +|+|++++|+++ .|++|
T Consensus 63 ~~~-~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 63 EKA-KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EES-SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ccc-CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 688 89999999998 7999999999999999999988 88999999999999976 468899999985 59999
Q ss_pred EEeccCCCCCC-cceEecc--------ceeEE----EcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1577 HLWNASSIAGG-PMHSFEG--------CKAAR----FSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1577 kLWDl~t~~gk-~l~tf~g--------h~sVa----FSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
++||+.+ +. ++..+.. ++++. |+|++++|+++ +.|+.|++||+++++...... +
T Consensus 142 ~vwd~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~~~~~~--------~ 208 (357)
T 3i2n_A 142 KVWDPRQ--KDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAG---YDNGDIKLFDLRNMALRWETN--------I 208 (357)
T ss_dssp EEECTTS--CSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEE---ETTSEEEEEETTTTEEEEEEE--------C
T ss_pred EEEeCCC--CCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEE---ccCCeEEEEECccCceeeecC--------C
Confidence 9999987 44 5666643 35566 78999999999 888999999999988765543 3
Q ss_pred CCcceEEEEcC---CCCeEeecc-----EEEEcCCCcceeeec-----cCCCce-EEEEecCCC-EEEEEe-----EEEe
Q 000177 1644 GHAYSQIHFSP---SDTMLLWNG-----ILWDRRNSVPVHRFD-----QFTDHG-GGGFHPAGN-EVIINS-----EVWD 1703 (1922)
Q Consensus 1644 gh~~~vVaFSP---dG~lLaSgg-----rLWDlrtgk~I~kf~-----gh~~~V-sVaFSPdG~-~LASGS-----eIWD 1703 (1922)
......++|+| ++.++++++ ++||+++++++..+. +|...+ ++.|+|++. +|++++ ++||
T Consensus 209 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd 288 (357)
T 3i2n_A 209 KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWK 288 (357)
T ss_dssp SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEee
Confidence 34556699999 899999877 899999988776665 888888 999999998 788888 5999
Q ss_pred cCCC-------------------eEEEEEcCCCc--eeEEEccCCCEEE-EEE
Q 000177 1704 LRKF-------------------RLLRSVPSLDQ--TTITFNARGDVIY-AIL 1734 (1922)
Q Consensus 1704 LrTg-------------------klL~tl~gH~~--~sVaFSPdG~~La-Sgs 1734 (1922)
++++ +++.++.+|.. ++++|+|+|++|+ ++.
T Consensus 289 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 289 YEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp EECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE
T ss_pred cCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec
Confidence 9853 56778888876 8999999999998 564
No 68
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.5e-23 Score=240.69 Aligned_cols=226 Identities=14% Similarity=0.227 Sum_probs=180.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCceeeeccCCCCeeEEEeeecCC--CcEEEEe-cC
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN--SSSPLESCTSHQAPVTLVQSHLSGE--TQLLLSS-SS 1573 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~--tgk~l~tL~gHss~VtsLq~afSpD--G~lLaSS-sD 1573 (1922)
+++.++++|. +.|++++|+|++++|++|+.||.|+|||+. +++.+..+.+|...|+++ .|+++ +++|+++ .|
T Consensus 2 ~~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~~l~s~~~d 78 (379)
T 3jrp_A 2 SMVVIANAHN-ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV--DWAHPKFGTILASCSYD 78 (379)
T ss_dssp ---CCEEECC-CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE--EECCGGGCSEEEEEETT
T ss_pred CccEEecCCc-ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEE--EeCCCCCCCEEEEeccC
Confidence 3566788999 999999999999999999999999999997 556778889999999999 77766 8888885 59
Q ss_pred CcEEEeccCCCCCC--cceEecc----ceeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1574 QDVHLWNASSIAGG--PMHSFEG----CKAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk--~l~tf~g----h~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
++|++||+.+ ++ .+..+.. +++++|+|+ +++|+++ +.|+.|++||++++.....+. ...+..
T Consensus 79 g~v~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~---~~d~~i~v~d~~~~~~~~~~~-----~~~~~~ 148 (379)
T 3jrp_A 79 GKVLIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA---SSDGKVSVVEFKENGTTSPII-----IDAHAI 148 (379)
T ss_dssp SCEEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSEEEEEECCTTSCCCEEE-----EECCTT
T ss_pred CEEEEEEcCC--CceeEeeeecCCCcceEEEEeCCCCCCCEEEEe---cCCCcEEEEecCCCCceeeEE-----ecCCCC
Confidence 9999999987 54 5556654 388999999 9999999 889999999999875433221 011233
Q ss_pred cceEEEEcC-------------CCCeEeecc-----EEEEcCCCc----ceeeeccCCCce-EEEEecC---CCEEEEEe
Q 000177 1646 AYSQIHFSP-------------SDTMLLWNG-----ILWDRRNSV----PVHRFDQFTDHG-GGGFHPA---GNEVIINS 1699 (1922)
Q Consensus 1646 ~~~vVaFSP-------------dG~lLaSgg-----rLWDlrtgk----~I~kf~gh~~~V-sVaFSPd---G~~LASGS 1699 (1922)
....++|+| ++.++++++ ++||+++++ ++..+.+|...+ +++|+|+ +.+|++++
T Consensus 149 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~ 228 (379)
T 3jrp_A 149 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228 (379)
T ss_dssp CEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred ceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence 455599999 689999877 999999875 456778898888 9999999 89999998
Q ss_pred -----EEEecCCCe---EEEEEc--CCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 -----EVWDLRKFR---LLRSVP--SLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 -----eIWDLrTgk---lL~tl~--gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+|||++++. ....+. .|.. ++++|+|+|++|+++..+.
T Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg 278 (379)
T 3jrp_A 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278 (379)
T ss_dssp TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence 599999864 222222 2433 7999999999999986543
No 69
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.7e-24 Score=266.36 Aligned_cols=270 Identities=10% Similarity=0.056 Sum_probs=194.7
Q ss_pred EEecCCCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCCc-----------eeeeccCCCCeeEEEeeecCC
Q 000177 1502 RTCRDDAGALLTCITFLGD------SSHIAVGSHTKELKIFDSNSSSP-----------LESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPD------G~lLASGS~DGtIkIWDl~tgk~-----------l~tL~gHss~VtsLq~afSpD 1564 (1922)
.++.+|. +.|++++|+|+ +.+||+|+.||+|+|||+.++.. ..++.+|...|+++ +|+++
T Consensus 201 ~~l~~~~-~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv--~~s~~ 277 (524)
T 2j04_B 201 QTIVHSF-GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTF--DFLSP 277 (524)
T ss_dssp EEEEECC-CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEE--EESSS
T ss_pred EEEEecC-CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEE--EecCC
Confidence 4567788 89999999996 57999999999999999987642 24778999999999 77877
Q ss_pred CcEEEE-ecCCcEEEeccCCCCCCcceEeccc----eeE--EEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1565 TQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAA--RFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1565 G~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sV--aFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
+ .|++ +.|++|++||+++. ..+...+.+| +++ .|+|++ ++|+++ +.|++|+|||++++++..++...
T Consensus 278 ~-~lasgs~DgtV~lWD~~~~-~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~---S~D~tvklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 278 T-TVVCGFKNGFVAEFDLTDP-EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV---AVDGYFYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp S-EEEEEETTSEEEEEETTBC-SSCSEEEECSSSCEEEEEEECCTTSCCEEEEE---ETTSEEEEECGGGHHHHCEEEEE
T ss_pred C-eEEEEeCCCEEEEEECCCC-CCceEEeecccccEEEEEEEcCCCCCeEEEEe---ccCCeEEEEECCCCCcccccccc
Confidence 6 5555 56999999999862 2445566665 677 578888 899999 89999999999998877666410
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecC
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLr 1705 (1922)
. ....+..++|+|+++.+++++ ++||++++.+++++.+|...| +++|+|+|++|++|+ +|||+.
T Consensus 353 ~-----~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 353 F-----RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp C-----SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred c-----ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 0 011234599999999988776 999999999999999999999 999999999999999 599986
Q ss_pred CCeEEEEEcC----CC---ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec-cCCc
Q 000177 1706 KFRLLRSVPS----LD---QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP-VDRC 1777 (1922)
Q Consensus 1706 TgklL~tl~g----H~---~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid-vkr~ 1777 (1922)
.. ++..... +. .++++|+|+|..+. .+. . ..++. +. .+...+.++. ....
T Consensus 428 ~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~-~-~~~~~-----------------~~-~~g~~~~~l~gh~~~ 485 (524)
T 2j04_B 428 RR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS-S-YEVYP-----------------LT-VNDVSKAKIDAHGIN 485 (524)
T ss_dssp SS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC-C-CCCCC-------------------------------CCCS
T ss_pred Hh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC-C-ceecc-----------------cc-cCCcceeeecCCCce
Confidence 53 2222111 11 25889999998553 211 1 00100 00 0011112222 2457
Q ss_pred eEEEEEcCCCc---eEEEEecCCCCCccceEEEEEecC
Q 000177 1778 VLDFATERTDS---FVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1778 I~dLa~SPdds---~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
|..++|+|++. .+|.. ..++.||||.+..
T Consensus 486 V~~Vafsp~~~~~~~lAsg------~~~g~vrlw~l~~ 517 (524)
T 2j04_B 486 ITCTKWNETSAGGKCYAFS------NSAGLLTLEYLSL 517 (524)
T ss_dssp CCCEEECCSTTTTTEEEEE------CTTSEEEEEECSC
T ss_pred EEEEECCCCCCccHHHHhh------ccCceEEEEEccc
Confidence 99999999964 66643 3458999999754
No 70
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.1e-23 Score=244.65 Aligned_cols=270 Identities=12% Similarity=0.214 Sum_probs=211.9
Q ss_pred CCEEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCC---ceeeeccCCCCeeEEEeeecCCCcEEEEe-cCC
Q 000177 1510 ALLTCITFLGDSS-HIAVG----------SHTKELKIFDSNSSS---PLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQ 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~-lLASG----------S~DGtIkIWDl~tgk---~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDg 1574 (1922)
..|++++|+|+|+ +|++| +.|+.|+|||+.++. .+..+ .|...|+++ .|+|++++|+++ .|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~--~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDL--DWSHNNKIIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEE--EECSSSSCEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEE--EECCCCCeEEEEccCC
Confidence 4688999999997 99999 899999999998876 33333 589999999 889999999985 699
Q ss_pred cEEEeccCCC--CCCcceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCc------eeeeecccccccc
Q 000177 1575 DVHLWNASSI--AGGPMHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQ------LEAKLSDTSVNLT 1641 (1922)
Q Consensus 1575 tVkLWDl~t~--~gk~l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk------~i~tL~d~s~~~~ 1641 (1922)
.|++||+... ..+++..+.+| ++++|+|+ +++|+++ +.|++|++||+.+++ ....+. ...
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~----~~~ 162 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASG---GNNGEIFIWDMNKCTESPSNYTPLTPG----QSM 162 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEE---CSSSCEEBCBTTTTSSCTTTCCCBCCC----CSC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEE---cCCCeEEEEECCCCccccccccccccc----ccc
Confidence 9999999761 12356666654 78999998 8999998 889999999999876 322221 011
Q ss_pred CCCCcceEEEEcCC-CCeEeecc-----EEEEcCCCcceeeeccC------CCce-EEEEecCC-CEEEEEe--------
Q 000177 1642 GRGHAYSQIHFSPS-DTMLLWNG-----ILWDRRNSVPVHRFDQF------TDHG-GGGFHPAG-NEVIINS-------- 1699 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPd-G~lLaSgg-----rLWDlrtgk~I~kf~gh------~~~V-sVaFSPdG-~~LASGS-------- 1699 (1922)
.+......++|+|+ +.++++++ ++||+++++++..+..+ ...+ +++|+|++ .+|++++
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 13334556999999 67888766 99999999999988876 5666 99999997 5888876
Q ss_pred EEEecCCC-eEEEEEc-CCCc--eeEEEcc-CCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc
Q 000177 1700 EVWDLRKF-RLLRSVP-SLDQ--TTITFNA-RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1700 eIWDLrTg-klL~tl~-gH~~--~sVaFSP-dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
++||++++ +++..+. +|.. ++++|+| ++.+|+++.. +..+++|+..+.+.+.++..
T Consensus 243 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-------------------dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-------------------DNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp CEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES-------------------SSEEEEECSSSCCEEEEEEC
T ss_pred EEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC-------------------CCCEEEeeCCCCccceeecC
Confidence 39999986 6777777 7766 8999999 8999999853 34567788777777777765
Q ss_pred -CCceEEEEEcCCC-ceEEEEecCCCCCccceEEEEEecCCC
Q 000177 1775 -DRCVLDFATERTD-SFVGLITMDDQEDMFSSARIYEIGRRR 1814 (1922)
Q Consensus 1775 -kr~I~dLa~SPdd-s~LAVVe~dds~d~dSsVRLyEVGr~r 1814 (1922)
...|.+++|+|++ .++++. ..++.+++|++....
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~------~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACA------SFDNKIEVQTLQNLT 339 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEEC------CSSSEEEEEESCCCC
T ss_pred CCCceEEEEECCCCCCEEEEE------ecCCcEEEEEccCCC
Confidence 5569999999998 666643 345789999986544
No 71
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.9e-22 Score=230.49 Aligned_cols=231 Identities=15% Similarity=0.177 Sum_probs=193.4
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS 1571 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS 1571 (1922)
.|.....+.+.++.+|. +.|++++|+|++++|++|+.||+|++||+.+++.+..+. |...|.++ .|+|++++|+++
T Consensus 58 vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~--~~~~~~~~l~~~ 133 (369)
T 3zwl_B 58 VWYSLNGERLGTLDGHT-GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRV--EFSPCGNYFLAI 133 (369)
T ss_dssp EEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEE--EECTTSSEEEEE
T ss_pred EEeCCCchhhhhhhhcC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEE--EEccCCCEEEEe
Confidence 34456778889999999 999999999999999999999999999999999998888 88999999 889999999985
Q ss_pred -cC-----CcEEEeccCCCCC---------CcceEec------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cce
Q 000177 1572 -SS-----QDVHLWNASSIAG---------GPMHSFE------GCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQL 1629 (1922)
Q Consensus 1572 -sD-----gtVkLWDl~t~~g---------k~l~tf~------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~ 1629 (1922)
.+ +.|++||+..... ..+..+. .+.+++|+|++++|+++ +.|+.|++||+++ ++.
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~ 210 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG---HKDGKISKYDVSNNYEY 210 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE---ETTSEEEEEETTTTTEE
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE---cCCCEEEEEECCCCcEe
Confidence 46 8999999986211 1222222 34789999999999998 8899999999998 677
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----- 1699 (1922)
+..+. .+...+..++|+|++++|++++ ++||+++++.+..+.......++.|+|+++++++++
T Consensus 211 ~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (369)
T 3zwl_B 211 VDSID-------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAK 283 (369)
T ss_dssp EEEEE-------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC--
T ss_pred EEEEe-------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCc
Confidence 77665 1233445599999999999876 899999999999888443333999999999999976
Q ss_pred --------------EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1700 --------------EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1700 --------------eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
.+||+.+++.+..+.+|.. ++++|+|+|++|+++..+
T Consensus 284 ~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d 336 (369)
T 3zwl_B 284 DVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGED 336 (369)
T ss_dssp -----------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCC
Confidence 3899999999999998876 799999999999998543
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.2e-22 Score=240.45 Aligned_cols=267 Identities=12% Similarity=0.148 Sum_probs=208.3
Q ss_pred ecCCCCCC--EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEEe-cCCcEEEe
Q 000177 1504 CRDDAGAL--LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1504 LrgH~d~~--Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaSS-sDgtVkLW 1579 (1922)
..+|. .. +.++.|++ ..+++++.||.|+|||+.+++....+.. |...|+++ +|+|++++|+++ .|+.|++|
T Consensus 87 ~~~~~-~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v--~~s~~~~~l~~~~~dg~i~iw 161 (401)
T 4aez_A 87 APGII-DDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASV--KWSHDGSFLSVGLGNGLVDIY 161 (401)
T ss_dssp CTTCC-CCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEE--EECTTSSEEEEEETTSCEEEE
T ss_pred CCCCc-CCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEE--EECCCCCEEEEECCCCeEEEE
Confidence 34665 44 45566664 5688999999999999999998887755 89999999 889999999985 59999999
Q ss_pred ccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEcC
Q 000177 1580 NASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
|+.+ ++.+..+.+| .++.| ++++|+++ +.|+.|++||+++ +..+..+. .+...+..++|+|
T Consensus 162 d~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~ 227 (401)
T 4aez_A 162 DVES--QTKLRTMAGHQARVGCLSW--NRHVLSSG---SRSGAIHHHDVRIANHQIGTLQ-------GHSSEVCGLAWRS 227 (401)
T ss_dssp ETTT--CCEEEEECCCSSCEEEEEE--ETTEEEEE---ETTSEEEEEETTSSSCEEEEEE-------CCSSCEEEEEECT
T ss_pred ECcC--CeEEEEecCCCCceEEEEE--CCCEEEEE---cCCCCEEEEecccCcceeeEEc-------CCCCCeeEEEEcC
Confidence 9988 7788888765 67888 56799998 8899999999994 55555554 1233445599999
Q ss_pred CCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCC-EEEEEe-------EEEecCCCeEEEEEcCCCc-e
Q 000177 1655 SDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGN-EVIINS-------EVWDLRKFRLLRSVPSLDQ-T 1719 (1922)
Q Consensus 1655 dG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~-~LASGS-------eIWDLrTgklL~tl~gH~~-~ 1719 (1922)
++++|++++ ++||+++++++..+..|...+ +++|+|++. .+++++ .+||+++++++..+..+.. +
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~ 307 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEE
T ss_pred CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 999999887 999999999999999999888 999999774 566653 4999999999999975544 8
Q ss_pred eEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeee--e-ccCCceEEEEEcCCCceEEEEecC
Q 000177 1720 TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIAT--I-PVDRCVLDFATERTDSFVGLITMD 1796 (1922)
Q Consensus 1720 sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaT--i-dvkr~I~dLa~SPdds~LAVVe~d 1796 (1922)
+++|+|+|.+++++... .+..+++|+..+...... + .....|..++|+|++.++++..
T Consensus 308 ~~~~s~~~~~l~~~~g~-----------------~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~-- 368 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGF-----------------PDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA-- 368 (401)
T ss_dssp EEEECSSSSEEEEEECT-----------------TTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC--
T ss_pred EEEECCCCCeEEEEeec-----------------CCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe--
Confidence 99999999999986321 123455666554333222 2 2355799999999999988763
Q ss_pred CCCCccceEEEEEecC
Q 000177 1797 DQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1797 ds~d~dSsVRLyEVGr 1812 (1922)
.++.+++|++..
T Consensus 369 ----~dg~i~iw~~~~ 380 (401)
T 4aez_A 369 ----SDENLKFWRVYD 380 (401)
T ss_dssp ----TTSEEEEEECCC
T ss_pred ----CCCcEEEEECCC
Confidence 347899998754
No 73
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=8.8e-22 Score=237.02 Aligned_cols=264 Identities=14% Similarity=0.199 Sum_probs=212.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~g 1586 (1922)
-.+++|+||++ ++|++|. |++|+|||+.++++...+ .+|...|++| +|+|+|++|++| .|++|+|||+.+ +
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv--~fspdg~~lasgs~Dg~v~iWd~~~--~ 179 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSV--AWIKEGNYLAVGTSSAEVQLWDVQQ--Q 179 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEE--EECTTSSEEEEEETTSCEEEEETTT--T
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEE--EECCCCCEEEEEECCCeEEEEEcCC--C
Confidence 45678999975 5788776 999999999999988766 5678899999 889999999995 599999999998 8
Q ss_pred CcceEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1587 GPMHSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1587 k~l~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
+++..+.+| ...++++++.++++| +.|+.+++||...... +.++. ++......+.|+|+++++++++
T Consensus 180 ~~~~~~~~h~~~v~~~s~~~~~l~sg---s~d~~i~~~d~~~~~~~~~~~~-------~h~~~~~~~~~~~~g~~l~s~~ 249 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWNSYILSSG---SRSGHIHHHDVRVAEHHVATLS-------GHSQEVCGLRWAPDGRHLASGG 249 (420)
T ss_dssp EEEEEECCCSSCEEEEEEETTEEEEE---ETTSEEEEEETTSSSCEEEEEE-------CCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEeCCCCceEEEeeCCCEEEEE---eCCCceeEeeecccceeeEEec-------ccccceeeeeecCCCCeeeeee
Confidence 888888887 334556678899998 8899999999987543 34443 1233444599999999999877
Q ss_pred -----EEEEcCCCc----ceeeeccCCCce-EEEEecCCC-EEEEEe-------EEEecCCCeEEEEEcCCCc-eeEEEc
Q 000177 1664 -----ILWDRRNSV----PVHRFDQFTDHG-GGGFHPAGN-EVIINS-------EVWDLRKFRLLRSVPSLDQ-TTITFN 1724 (1922)
Q Consensus 1664 -----rLWDlrtgk----~I~kf~gh~~~V-sVaFSPdG~-~LASGS-------eIWDLrTgklL~tl~gH~~-~sVaFS 1724 (1922)
++||..+++ .+..+..|...+ +++|+|++. .+++++ +|||+.+++++..+..+.. +++.|+
T Consensus 250 ~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~ 329 (420)
T 4gga_A 250 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 329 (420)
T ss_dssp TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEE
T ss_pred ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeec
Confidence 899999875 456677888888 999999765 555543 5999999999999987766 899999
Q ss_pred cCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccc
Q 000177 1725 ARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFS 1803 (1922)
Q Consensus 1725 PdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dS 1803 (1922)
|++..++++... .+..+++|+..+...+.++.. ...|.+++|+|++.+|+... .|.
T Consensus 330 ~~~~~lv~~sg~-----------------~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s------~D~ 386 (420)
T 4gga_A 330 PHYKELISGHGF-----------------AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA------ADE 386 (420)
T ss_dssp TTTTEEEEEECT-----------------TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE------TTT
T ss_pred CCCCeEEEEEec-----------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe------cCC
Confidence 999999987421 124578888888888888875 45699999999999998653 457
Q ss_pred eEEEEEecC
Q 000177 1804 SARIYEIGR 1812 (1922)
Q Consensus 1804 sVRLyEVGr 1812 (1922)
.||+|++-.
T Consensus 387 tvriWdv~~ 395 (420)
T 4gga_A 387 TLRLWRCFE 395 (420)
T ss_dssp EEEEECCSC
T ss_pred eEEEEECCC
Confidence 899998743
No 74
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.91 E-value=1.8e-22 Score=242.98 Aligned_cols=231 Identities=14% Similarity=0.215 Sum_probs=186.8
Q ss_pred eeecCceeeEEec--CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1493 FVYSRFRPWRTCR--DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1493 fi~srfrpirtLr--gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
|...+++.++.+. +|. ..|+||+|+|+|++|++|+.||+|+|||+.+++++.++.+|...|.++ .+ ++.+|++
T Consensus 130 Wd~~tg~~~~~~~~~~~~-~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~--s~--~~~~l~s 204 (420)
T 4gga_A 130 WSASSGDILQLLQMEQPG-EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SW--NSYILSS 204 (420)
T ss_dssp EETTTCCEEEEEECCSTT-CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EE--ETTEEEE
T ss_pred EECCCCCEEEEEEecCCC-CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEE--ee--CCCEEEE
Confidence 3345566566554 677 889999999999999999999999999999999999999999999999 55 5678888
Q ss_pred e-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 S-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+ .|+.+++||.... ...+.++.+| ..+.|+|++++++++ +.|+.+++||..+++...... .....+..
T Consensus 205 gs~d~~i~~~d~~~~-~~~~~~~~~h~~~~~~~~~~~~g~~l~s~---~~D~~v~i~~~~~~~~~~~~~---~~~~~~~~ 277 (420)
T 4gga_A 205 GSRSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPDGRHLASG---GNDNLVNVWPSAPGEGGWVPL---QTFTQHQG 277 (420)
T ss_dssp EETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEESSCCSSCSCCS---EEECCCSS
T ss_pred EeCCCceeEeeeccc-ceeeEEecccccceeeeeecCCCCeeeee---eccccceEEeeccccccceee---eeecccCC
Confidence 5 5999999999862 3445666665 678999999999999 889999999999876432110 00011223
Q ss_pred cceEEEEcCCCCeEe-ec--c-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-------EEEecCCCeEE
Q 000177 1646 AYSQIHFSPSDTMLL-WN--G-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-------EVWDLRKFRLL 1710 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLa-Sg--g-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-------eIWDLrTgklL 1710 (1922)
.+..++|+|.+..++ ++ + ++||+.+++++..+..+...+++.|+|+++++++++ .|||+.+++++
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 345599999876444 32 2 899999999999998887777999999999998875 59999999999
Q ss_pred EEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1711 RSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1711 ~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
.++.+|.. ++++|+|+|++|++++.
T Consensus 358 ~~l~gH~~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 358 AELKGHTSRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999987 89999999999999863
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.91 E-value=2e-22 Score=236.74 Aligned_cols=226 Identities=12% Similarity=0.227 Sum_probs=188.2
Q ss_pred ceeeEEecCCCCCCEEEEEEcCC----C---CEEEEEeCCCcEEEEECCCCCc-----eeeeccC-----CCCeeEEEee
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGD----S---SHIAVGSHTKELKIFDSNSSSP-----LESCTSH-----QAPVTLVQSH 1560 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPD----G---~lLASGS~DGtIkIWDl~tgk~-----l~tL~gH-----ss~VtsLq~a 1560 (1922)
+..+..+.+|. ..|++++|+|+ | ++|++|+.||.|++||+.+++. ...+.+| ...|+++ .
T Consensus 52 ~~~~~~~~~h~-~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 128 (397)
T 1sq9_A 52 KDKSYSHFVHK-SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL--K 128 (397)
T ss_dssp GGGEEEEECCT-TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEE--E
T ss_pred CCcceEEecCC-CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEE--E
Confidence 34688888999 99999999999 9 9999999999999999999887 8888889 5999999 7
Q ss_pred ec----CCCcE-EEEe-cCCcEEEeccCCCC----CCcce-----Eecc-----------ceeEEEcCCCCEEEEeecCC
Q 000177 1561 LS----GETQL-LLSS-SSQDVHLWNASSIA----GGPMH-----SFEG-----------CKAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1561 fS----pDG~l-LaSS-sDgtVkLWDl~t~~----gk~l~-----tf~g-----------h~sVaFSPDG~~LaSgS~~S 1614 (1922)
|+ |++++ |+++ .|+.|++||+.+.. +..+. .+.+ +++++|+|++ +|+++ +
T Consensus 129 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~---~ 204 (397)
T 1sq9_A 129 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATG---F 204 (397)
T ss_dssp EECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEE---C
T ss_pred EeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEE---e
Confidence 88 99998 8885 69999999997510 12333 5532 4889999999 99998 8
Q ss_pred CCCeEEEEECCCCceeeeeccccccccCC---CCcceEEEEcCCCCeEeec------c--EEEEcCCCcceeeecc----
Q 000177 1615 SDRGILLYDIQTYQLEAKLSDTSVNLTGR---GHAYSQIHFSPSDTMLLWN------G--ILWDRRNSVPVHRFDQ---- 1679 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i~tL~d~s~~~~~~---gh~~~vVaFSPdG~lLaSg------g--rLWDlrtgk~I~kf~g---- 1679 (1922)
.|+.|++||+++++.+..+... ..+ ......++|+|++++|+++ + ++||+++++++..+.+
T Consensus 205 ~dg~i~i~d~~~~~~~~~~~~~----~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 205 NNGTVQISELSTLRPLYNFESQ----HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 280 (397)
T ss_dssp TTSEEEEEETTTTEEEEEEECC----C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred CCCcEEEEECCCCceeEEEecc----ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence 8999999999999988888610 001 3345569999999999965 3 8999999999999998
Q ss_pred ---------CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc------CC---------------Cc--eeE
Q 000177 1680 ---------FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP------SL---------------DQ--TTI 1721 (1922)
Q Consensus 1680 ---------h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~------gH---------------~~--~sV 1721 (1922)
|...+ +++|+|++++|++++ .|||+++++++.++. +| .. +++
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 88888 999999999999998 599999999999999 66 54 899
Q ss_pred EEccCC----------CEEEEEE
Q 000177 1722 TFNARG----------DVIYAIL 1734 (1922)
Q Consensus 1722 aFSPdG----------~~LaSgs 1734 (1922)
+|+|+| ++|+++.
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEE
T ss_pred EeccccccccccccccceEEEec
Confidence 999999 7888885
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.90 E-value=1.9e-21 Score=234.69 Aligned_cols=273 Identities=14% Similarity=0.228 Sum_probs=221.1
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
+.|.....+.+.++.+|. +.|++++|+ +++|++|+.||+|++||+.+++.+.++.+|...|.++ .|+ +.++++
T Consensus 142 ~vwd~~~~~~~~~~~~h~-~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~--~~~l~s 214 (445)
T 2ovr_B 142 KVWSAVTGKCLRTLVGHT-GGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCM--HLH--EKRVVS 214 (445)
T ss_dssp EEEETTTCCEEEECCCCS-SCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE--EEE--TTEEEE
T ss_pred EEEECCCCcEEEEEcCCC-CCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEE--Eec--CCEEEE
Confidence 334456778889999999 999999998 6799999999999999999999999999999999999 564 456666
Q ss_pred -ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 -SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 -SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+.|++|++||+.+ ++++..+.+| .++.| ++++++++ +.|+.|++||+++++++.++. +|
T Consensus 215 ~s~dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~--~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~---------~~ 278 (445)
T 2ovr_B 215 GSRDATLRVWDIET--GQCLHVLMGHVAAVRCVQY--DGRRVVSG---AYDFMVKVWDPETETCLHTLQ---------GH 278 (445)
T ss_dssp EETTSEEEEEESSS--CCEEEEEECCSSCEEEEEE--CSSCEEEE---ETTSCEEEEEGGGTEEEEEEC---------CC
T ss_pred EeCCCEEEEEECCC--CcEEEEEcCCcccEEEEEE--CCCEEEEE---cCCCEEEEEECCCCcEeEEec---------CC
Confidence 5699999999998 7788888765 66777 78899998 889999999999999988885 55
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
...+.++..++.++++++ ++||+++++++..+.+|...+ ++.+ +++++++++ ++||+++++.+.++.
T Consensus 279 ~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 279 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred CCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 555533344888999877 999999999999999998877 5555 567999988 599999999999998
Q ss_pred C---CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeee------ccCCceEEEEE
Q 000177 1715 S---LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATI------PVDRCVLDFAT 1783 (1922)
Q Consensus 1715 g---H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTi------dvkr~I~dLa~ 1783 (1922)
+ |.. ++++|+ +.+|+++.. +..+++|+..+.+.+..+ .....|..++|
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~-------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 415 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSD-------------------DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 415 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEET-------------------TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeC-------------------CCeEEEEECCCCceeeeeeccccCCCCceEEEEEe
Confidence 6 444 678885 578888852 345777887777777666 33556999999
Q ss_pred cCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1784 ERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1784 SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+|++.++++...+.. ....+.+|+.+
T Consensus 416 s~~~~~la~~~~dg~--~~~~l~v~df~ 441 (445)
T 2ovr_B 416 SNTKLVCAVGSRNGT--EETKLLVLDFD 441 (445)
T ss_dssp CSSEEEEEEECSSSS--SCCEEEEEECC
T ss_pred cCCEEEEEEcccCCC--CccEEEEEECC
Confidence 999999888754433 23678899864
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.90 E-value=1.7e-21 Score=220.90 Aligned_cols=261 Identities=15% Similarity=0.206 Sum_probs=206.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCc
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~ 1588 (1922)
+++|+||+++ +|++|. |++|+|||+.+++++.++ .+|...|+++ .|+|++++|++| .|++|+|||+.+ +++
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v--~~~~~~~~l~sgs~Dg~v~iw~~~~--~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSV--AWIKEGNYLAVGTSSAEVQLWDVQQ--QKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEE--EECTTSSEEEEEETTSEEEEEETTT--TEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEE--EECCCCCEEEEEECCCcEEEeecCC--cee
Confidence 5789999886 777765 999999999999988877 4678889999 899999999995 599999999998 888
Q ss_pred ceEeccc--eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee-eeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1589 MHSFEGC--KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE-AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1589 l~tf~gh--~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i-~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
+..+.+| ....+++++..++++ +.++.+++|+..+.... ..+. ++......+.|+++++++++++
T Consensus 102 ~~~~~~h~~~~~~~~~~~~~l~s~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~d 171 (318)
T 4ggc_A 102 LRNMTSHSARVGSLSWNSYILSSG---SRSGHIHHHDVRVAEHHVATLS-------GHSQEVCGLRWAPDGRHLASGGND 171 (318)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEE---ETTSEEEEEETTSSSCEEEEEE-------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEecCccceEEEeecCCCEEEEE---ecCCceEeeecCCCceeEEEEc-------CccCceEEEEEcCCCCEEEEEecC
Confidence 8888887 456677788999998 88899999999876543 3332 2233445599999999999877
Q ss_pred ---EEEEcCCCcc----eeeeccCCCce-EEEEecCCCEEE-E--Ee-----EEEecCCCeEEEEEcCCCc-eeEEEccC
Q 000177 1664 ---ILWDRRNSVP----VHRFDQFTDHG-GGGFHPAGNEVI-I--NS-----EVWDLRKFRLLRSVPSLDQ-TTITFNAR 1726 (1922)
Q Consensus 1664 ---rLWDlrtgk~----I~kf~gh~~~V-sVaFSPdG~~LA-S--GS-----eIWDLrTgklL~tl~gH~~-~sVaFSPd 1726 (1922)
++||+++++. +.....+...+ ++.|+|++..++ + ++ ++||.++.........+.. ..+.|+|+
T Consensus 172 ~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~ 251 (318)
T 4ggc_A 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPH 251 (318)
T ss_dssp SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETT
T ss_pred cceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccc
Confidence 8999998764 34455666677 889999876433 3 32 5999999888777665444 89999999
Q ss_pred CCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEEEEEcCCCceEEEEecCCCCCccceE
Q 000177 1727 GDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSA 1805 (1922)
Q Consensus 1727 G~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsV 1805 (1922)
+..++++... .+..+++||..+.+.+.++.. ...|.+++|+|++.+|+... .|+.|
T Consensus 252 ~~~~~~~sg~-----------------~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s------~D~~v 308 (318)
T 4ggc_A 252 YKELISGHGF-----------------AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA------ADETL 308 (318)
T ss_dssp TTEEEEEECT-----------------TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE------TTTEE
T ss_pred ccceEEEEEc-----------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe------cCCeE
Confidence 9999887421 234578889888888888875 55799999999999998653 45789
Q ss_pred EEEEec
Q 000177 1806 RIYEIG 1811 (1922)
Q Consensus 1806 RLyEVG 1811 (1922)
++|++-
T Consensus 309 ~iWd~~ 314 (318)
T 4ggc_A 309 RLWRCF 314 (318)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 999873
No 78
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.90 E-value=4.9e-23 Score=249.36 Aligned_cols=241 Identities=12% Similarity=0.149 Sum_probs=184.0
Q ss_pred ccCCccccccceeeecCceeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccC--CCCeeEE
Q 000177 1481 YSGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSH--QAPVTLV 1557 (1922)
Q Consensus 1481 ~Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gH--ss~VtsL 1557 (1922)
.|+.+|....|.+..........+.+|. +.|++|+|+| ++++|+||+.||+|+|||+.++........| ...+.++
T Consensus 137 sGs~dg~i~lWd~~~~~~~~~~~~~gH~-~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 215 (435)
T 4e54_B 137 VGSKGGDIMLWNFGIKDKPTFIKGIGAG-GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSL 215 (435)
T ss_dssp EEETTSCEEEECSSCCSCCEEECCCSSS-CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCE
T ss_pred EEeCCCEEEEEECCCCCceeEEEccCCC-CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEE
Confidence 4555566666655444445556677999 9999999998 7899999999999999999766543333333 4456777
Q ss_pred EeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceee
Q 000177 1558 QSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1558 q~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
.|+|++++|+++ .|++|++||++. +.+.++.+| ++++|+|++. +|+++ +.|++|+|||+++.+...
T Consensus 216 --~~~~~~~~l~~g~~dg~i~~wd~~~---~~~~~~~~h~~~v~~v~~~p~~~~~~~s~---s~d~~v~iwd~~~~~~~~ 287 (435)
T 4e54_B 216 --DVSASSRMVVTGDNVGNVILLNMDG---KELWNLRMHKKKVTHVALNPCCDWFLATA---SVDQTVKIWDLRQVRGKA 287 (435)
T ss_dssp --EEETTTTEEEEECSSSBEEEEESSS---CBCCCSBCCSSCEEEEEECTTCSSEEEEE---ETTSBCCEEETTTCCSSS
T ss_pred --EECCCCCEEEEEeCCCcEeeeccCc---ceeEEEecccceEEeeeecCCCceEEEEe---cCcceeeEEecccccccc
Confidence 889999999996 599999999974 566677664 7899999876 67777 789999999999877655
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC-------ceEEEEecCCCEEEEEe
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD-------HGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~-------~VsVaFSPdG~~LASGS 1699 (1922)
.+. ....+...+..++|+|+|++|++++ ++||++++.+...+..|.. .+.+.|+|++.++++++
T Consensus 288 ~~~----~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (435)
T 4e54_B 288 SFL----YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR 363 (435)
T ss_dssp CCS----BCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred eEE----EeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence 442 1112333455599999999999887 8999999988877766543 22678899888887764
Q ss_pred -----------------EEEecCCCeEEEEEcC-CCc--eeE-EEccCCCEEEEEE
Q 000177 1700 -----------------EVWDLRKFRLLRSVPS-LDQ--TTI-TFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 -----------------eIWDLrTgklL~tl~g-H~~--~sV-aFSPdG~~LaSgs 1734 (1922)
++||..+++++.++.. |.. .++ +|||+|++|+++.
T Consensus 364 ~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 364 YPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp CCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred cCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 4999999999988764 433 455 7999999999873
No 79
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.90 E-value=1.3e-21 Score=236.25 Aligned_cols=269 Identities=16% Similarity=0.280 Sum_probs=215.4
Q ss_pred eeeecCceeeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
+|...++++.+.+.+|. +. ++|+.| +|++|++|+.||+|+|||+.+++.+.++.+|...|+++ .|+ +.+|++
T Consensus 102 ~w~~~~~~~~~~l~~h~-~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~--~~~--~~~l~s 174 (445)
T 2ovr_B 102 NWRRGELKSPKVLKGHD-DHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSS--QMR--DNIIIS 174 (445)
T ss_dssp HHHHSCCCCCEEEECST-TSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEE--EEE--TTEEEE
T ss_pred cccCCCcceeEEecccC-CCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEE--Eec--CCEEEE
Confidence 34445666778899999 65 566555 68999999999999999999999999999999999999 665 457777
Q ss_pred -ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1571 -SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1571 -SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
+.|++|++||+.+ ++++.++.+| .++.|+ ++.++++ +.|++|++||+.+++.+..+. +|
T Consensus 175 ~~~dg~i~vwd~~~--~~~~~~~~~h~~~v~~~~~~--~~~l~s~---s~dg~i~~wd~~~~~~~~~~~---------~~ 238 (445)
T 2ovr_B 175 GSTDRTLKVWNAET--GECIHTLYGHTSTVRCMHLH--EKRVVSG---SRDATLRVWDIETGQCLHVLM---------GH 238 (445)
T ss_dssp EETTSCEEEEETTT--TEEEEEECCCSSCEEEEEEE--TTEEEEE---ETTSEEEEEESSSCCEEEEEE---------CC
T ss_pred EeCCCeEEEEECCc--CcEEEEECCCCCcEEEEEec--CCEEEEE---eCCCEEEEEECCCCcEEEEEc---------CC
Confidence 5699999999998 7788888775 567774 6789998 889999999999999988876 45
Q ss_pred cceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1646 AYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1646 ~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
...+.++..+++++++++ ++||+++++++.++.+|...+ ++.| ++.++++++ ++||+++++++.++.
T Consensus 239 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 316 (445)
T 2ovr_B 239 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316 (445)
T ss_dssp SSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred cccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc
Confidence 555533333788888777 999999999999999999888 8888 889999998 599999999999999
Q ss_pred CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc----CCceEEEEEcCCCceE
Q 000177 1715 SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV----DRCVLDFATERTDSFV 1790 (1922)
Q Consensus 1715 gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv----kr~I~dLa~SPdds~L 1790 (1922)
+|......+.+++.+++++.. +..+++||..+...+.++.. ...|..++|+ +.++
T Consensus 317 ~~~~~v~~~~~~~~~l~~~~~-------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 317 GHQSLTSGMELKDNILVSGNA-------------------DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp CCCSCEEEEEEETTEEEEEET-------------------TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred CCcccEEEEEEeCCEEEEEeC-------------------CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 998755555567789998852 34567778777777777753 4569999996 4666
Q ss_pred EEEecCCCCCccceEEEEEecC
Q 000177 1791 GLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1791 AVVe~dds~d~dSsVRLyEVGr 1812 (1922)
++.. .++.+++|++..
T Consensus 376 ~s~~------~dg~v~iwd~~~ 391 (445)
T 2ovr_B 376 ITSS------DDGTVKLWDLKT 391 (445)
T ss_dssp EEEE------TTSEEEEEETTT
T ss_pred EEEe------CCCeEEEEECCC
Confidence 6553 347899998743
No 80
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.90 E-value=1.9e-22 Score=232.21 Aligned_cols=219 Identities=15% Similarity=0.239 Sum_probs=180.5
Q ss_pred CCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEec
Q 000177 1507 DAGALLTCITFLGD----SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWN 1580 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPD----G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWD 1580 (1922)
|. ..|++++|+|+ |++|++|+.||.|+|||+.+++.+..+.+|...|+++ .|+| ++++|+++ .|++|++||
T Consensus 68 ~~-~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 68 AD-ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINEL--KFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp TT-CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEE--EECSSCTTEEEEEETTSCEEEEE
T ss_pred CC-CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEE--EECCCCCCEEEEEeCCCeEEEEE
Confidence 55 78999999998 6799999999999999999999999999999999999 8899 89999885 599999999
Q ss_pred cCCCCCCcceEe---cc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc-----------------
Q 000177 1581 ASSIAGGPMHSF---EG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT----------------- 1636 (1922)
Q Consensus 1581 l~t~~gk~l~tf---~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~----------------- 1636 (1922)
+.+ ++.+..+ .+ +.+++|+|++++|+++ +.|+.|++||+++++....+...
T Consensus 145 ~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 145 IQT--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSC---GMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp TTT--TEEEEEECSTTSCSSCEEEEEECTTSSEEEEE---ETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred eec--CeEEEEecccccccCceeEEEECCCCCEEEEe---cCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 987 6777776 34 3889999999999999 78999999999988765544310
Q ss_pred ----cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcc--------------eeeeccCCCce-EEEEecC-
Q 000177 1637 ----SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVP--------------VHRFDQFTDHG-GGGFHPA- 1691 (1922)
Q Consensus 1637 ----s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~--------------I~kf~gh~~~V-sVaFSPd- 1691 (1922)
......+...+..++|+ ++++++++ ++||++++.. +..+..|...+ +++|+|+
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 297 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 297 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT
T ss_pred ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC
Confidence 00001133445558888 77888777 9999998754 77888888888 8999999
Q ss_pred -CCEEEEEe-----EEEecCCCe----EEEEEcCCC--c--eeEEEccCCCEEEEEEc
Q 000177 1692 -GNEVIINS-----EVWDLRKFR----LLRSVPSLD--Q--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1692 -G~~LASGS-----eIWDLrTgk----lL~tl~gH~--~--~sVaFSPdG~~LaSgs~ 1735 (1922)
|++|++++ ++||+.+++ .+..+.+|. . ++++|+|+|++|+++..
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD 355 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC
Confidence 99999998 599999875 555788772 3 89999999999999853
No 81
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.90 E-value=1.5e-22 Score=241.61 Aligned_cols=230 Identities=15% Similarity=0.258 Sum_probs=178.6
Q ss_pred ceeeEEecCCC-----------CCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCCCce--------------------
Q 000177 1498 FRPWRTCRDDA-----------GALLTCITFLGDS--SHIAVGSHTKELKIFDSNSSSPL-------------------- 1544 (1922)
Q Consensus 1498 frpirtLrgH~-----------d~~Vt~LaFSPDG--~lLASGS~DGtIkIWDl~tgk~l-------------------- 1544 (1922)
++...++.+|. ++.|++++|+|++ .+|++|+.||+|+|||+.+++..
T Consensus 71 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 150 (447)
T 3dw8_B 71 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVT 150 (447)
T ss_dssp EEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCC
T ss_pred eeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCccccc
Confidence 34677888985 2569999999998 89999999999999998764331
Q ss_pred -------------------ee-eccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceE-------ecc---
Q 000177 1545 -------------------ES-CTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS-------FEG--- 1594 (1922)
Q Consensus 1545 -------------------~t-L~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t-------f~g--- 1594 (1922)
.. ..+|...|+++ +|+|++++|+++.|++|+|||+... +.++.. +.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~s~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 227 (447)
T 3dw8_B 151 TLRVPVFRPMDLMVEASPRRIFANAHTYHINSI--SINSDYETYLSADDLRINLWHLEIT-DRSFNIVDIKPANMEELTE 227 (447)
T ss_dssp SCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE--EECTTSSEEEEECSSEEEEEETTEE-EEEEEEEECCCSSGGGCCC
T ss_pred ceEeccccchheeeeccceEEeccCCCcceEEE--EEcCCCCEEEEeCCCeEEEEECCCC-CceeeeeecccccccccCc
Confidence 13 36899999999 8899999999999999999999841 333332 333
Q ss_pred -ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCce----eeeecccccc---c--cCCCCcceEEEEcCCCCeEeecc
Q 000177 1595 -CKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQL----EAKLSDTSVN---L--TGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1595 -h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~----i~tL~d~s~~---~--~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
+++++|+|++ ++|+++ +.|++|++||+++++. +..+...... . ..+...+..++|+|+|++|++++
T Consensus 228 ~v~~~~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 228 VITAAEFHPNSCNTFVYS---SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp CEEEEEECSSCTTEEEEE---ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred ceEEEEECCCCCcEEEEE---eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 4889999998 999999 8899999999999886 5555410000 0 00001455699999999999877
Q ss_pred ----EEEEcCC-CcceeeeccCCCce----------------EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC
Q 000177 1664 ----ILWDRRN-SVPVHRFDQFTDHG----------------GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1664 ----rLWDlrt-gk~I~kf~gh~~~V----------------sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~ 1717 (1922)
++||+++ ++++..+.+|...+ .++|+|+|++|++++ +|||+.+++.+. +.++.
T Consensus 305 ~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~ 383 (447)
T 3dw8_B 305 YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASR 383 (447)
T ss_dssp SSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCS
T ss_pred CCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecc
Confidence 9999997 88999998886432 399999999999998 599999988763 33221
Q ss_pred -----------------------------------ceeEEEccCCCEEEEEE
Q 000177 1718 -----------------------------------QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1718 -----------------------------------~~sVaFSPdG~~LaSgs 1734 (1922)
...++|+|+|++|+++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~ 435 (447)
T 3dw8_B 384 ENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVAT 435 (447)
T ss_dssp TTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEEC
T ss_pred cccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEe
Confidence 15799999999999884
No 82
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.90 E-value=8.2e-22 Score=244.03 Aligned_cols=263 Identities=15% Similarity=0.169 Sum_probs=211.5
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----CceeeeccCCCC-eeEEEeeecC--CCcEEEEe-cCCcEE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----SPLESCTSHQAP-VTLVQSHLSG--ETQLLLSS-SSQDVH 1577 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----k~l~tL~gHss~-VtsLq~afSp--DG~lLaSS-sDgtVk 1577 (1922)
.|. +.|++++|+|+|++|++|+ ++.|+|||+.++ +....+.+|... |+++ +|+| ++++|+++ .|++|+
T Consensus 16 ~~~-~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~--~~sp~~~~~~l~s~~~dg~v~ 91 (615)
T 1pgu_A 16 TQR-NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTV--KFSPIKGSQYLCSGDESGKVI 91 (615)
T ss_dssp CCT-TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEE--EECSSTTCCEEEEEETTSEEE
T ss_pred Ccc-CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEE--EECcCCCCCEEEEecCCCEEE
Confidence 477 8999999999999999999 889999999999 899999999999 9999 8899 99999995 599999
Q ss_pred EeccCCC------CCCcceEecc----ceeEEEcCCCCEEEEeecCCCC----CeEEEEECCCCceeeeeccccccccCC
Q 000177 1578 LWNASSI------AGGPMHSFEG----CKAARFSNSGNLFAALPTETSD----RGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1578 LWDl~t~------~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~D----gtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
|||+.+. ....+..+.. +.+++|+|++++|+++ +.+ +.|++|| +++.+..+. .+
T Consensus 92 vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~~~~~~~~v~~~d--~~~~~~~~~-------~~ 159 (615)
T 1pgu_A 92 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV---GEGRDNFGVFISWD--SGNSLGEVS-------GH 159 (615)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE---ECCSSCSEEEEETT--TCCEEEECC-------SC
T ss_pred EEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEe---ccCCCCccEEEEEE--CCCcceeee-------cC
Confidence 9999741 1245556654 4889999999999998 444 6788888 566666664 12
Q ss_pred CCcceEEEEcCCCC-eEeecc-----EEEEcCCCcceeeeccCCC---ce-EEEEecC-CCEEEEEe-----EEEecCCC
Q 000177 1644 GHAYSQIHFSPSDT-MLLWNG-----ILWDRRNSVPVHRFDQFTD---HG-GGGFHPA-GNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~-lLaSgg-----rLWDlrtgk~I~kf~gh~~---~V-sVaFSPd-G~~LASGS-----eIWDLrTg 1707 (1922)
...+..++|+|+++ ++++++ ++||+.+++++..+.+|.. .+ +++|+|+ |++|++++ .+||++++
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 239 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG 239 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence 33445599999998 677766 9999999999999999988 78 9999999 99999998 59999999
Q ss_pred eEEEEE-c---CCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-----C
Q 000177 1708 RLLRSV-P---SLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-----R 1776 (1922)
Q Consensus 1708 klL~tl-~---gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-----r 1776 (1922)
+.+..+ . +|.. .++.|+ ++.+|+++.. +..+++|+..+...+..+... .
T Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 240 EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA-------------------DATIRVWDVTTSKCVQKWTLDKQQLGN 299 (615)
T ss_dssp CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET-------------------TSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred CEeEEecccccccCCceEEEEEc-CCCEEEEEcC-------------------CCcEEEEECCCCcEEEEEcCCCCcccC
Confidence 999999 5 6765 799999 9999999853 234667777777666666654 4
Q ss_pred ceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+..+.|+ ++.++++.. .++.+++|++.
T Consensus 300 ~~~~~~~~-~~~~l~~~~------~~g~i~~~d~~ 327 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLS------LDGTLNFYELG 327 (615)
T ss_dssp CEEEEEEE-ETTEEEEEE------TTSCEEEEETT
T ss_pred ceeEEEeC-CCCeEEEEE------CCCCEEEEECC
Confidence 57777775 677776553 23567777654
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.90 E-value=9.1e-22 Score=235.10 Aligned_cols=226 Identities=15% Similarity=0.254 Sum_probs=184.5
Q ss_pred eeecCceeeEEecC-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-
Q 000177 1493 FVYSRFRPWRTCRD-DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS- 1570 (1922)
Q Consensus 1493 fi~srfrpirtLrg-H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS- 1570 (1922)
|.....+....+.. |. ..|++++|+|++++|++|+.||.|+|||+.+++.+.++.+|...|.++ .| ++++|++
T Consensus 118 w~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~--~~--~~~~l~~~ 192 (401)
T 4aez_A 118 WNADSGSVSALAETDES-TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCL--SW--NRHVLSSG 192 (401)
T ss_dssp EETTTCCEEEEEECCTT-CCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--EE--ETTEEEEE
T ss_pred eeCCCCcEeEeeecCCC-CCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEE--EE--CCCEEEEE
Confidence 33455566666665 77 899999999999999999999999999999999999999999999999 66 4567777
Q ss_pred ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~ 1646 (1922)
+.|+.|++||++.. ...+..+.+| .+++|+|++++|+++ +.|+.|++||+++++.+..+. .+...
T Consensus 193 ~~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~~~~~~~~~-------~~~~~ 261 (401)
T 4aez_A 193 SRSGAIHHHDVRIA-NHQIGTLQGHSSEVCGLAWRSDGLQLASG---GNDNVVQIWDARSSIPKFTKT-------NHNAA 261 (401)
T ss_dssp ETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEETTCSSEEEEEC-------CCSSC
T ss_pred cCCCCEEEEecccC-cceeeEEcCCCCCeeEEEEcCCCCEEEEE---eCCCeEEEccCCCCCccEEec-------CCcce
Confidence 56999999999851 4556666654 789999999999999 889999999999998888775 12344
Q ss_pred ceEEEEcCCCCeE-eec-----c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-------EEEecCCCeEEE
Q 000177 1647 YSQIHFSPSDTML-LWN-----G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-------EVWDLRKFRLLR 1711 (1922)
Q Consensus 1647 ~~vVaFSPdG~lL-aSg-----g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-------eIWDLrTgklL~ 1711 (1922)
+..++|+|++..+ +++ + ++||+++++++..+..+....+++|+|+|+++++++ .|||+.+++...
T Consensus 262 v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 262 VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE
T ss_pred EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee
Confidence 5569999987544 443 1 899999999999887554434999999999999843 599999976555
Q ss_pred E--EcCCCc--eeEEEccCCCEEEEEE
Q 000177 1712 S--VPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1712 t--l~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
. +.+|.. .+++|+|+|.+|+++.
T Consensus 342 ~~~~~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 342 QVDIPAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp EEEEECCSSCCCEEEECTTSSEEEEEC
T ss_pred EEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 4 567766 7999999999999984
No 84
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.90 E-value=2.1e-21 Score=240.49 Aligned_cols=220 Identities=12% Similarity=0.184 Sum_probs=188.3
Q ss_pred eeeEEecCCCCCC-EEEEEEcC--CCCEEEEEeCCCcEEEEECCCC--------CceeeeccCCCCeeEEEeeecCCCcE
Q 000177 1499 RPWRTCRDDAGAL-LTCITFLG--DSSHIAVGSHTKELKIFDSNSS--------SPLESCTSHQAPVTLVQSHLSGETQL 1567 (1922)
Q Consensus 1499 rpirtLrgH~d~~-Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tg--------k~l~tL~gHss~VtsLq~afSpDG~l 1567 (1922)
++.+.+.+|. +. |++++|+| ++++|++|+.||+|+|||+.++ +....+.+|..+|+++ .|+|++++
T Consensus 54 ~~~~~~~~h~-~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~~~~~ 130 (615)
T 1pgu_A 54 PPVVQFTGHG-SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI--SWDFEGRR 130 (615)
T ss_dssp CSEEEECTTT-TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEE--EECTTSSE
T ss_pred ccceEEecCC-CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEE--EEeCCCCE
Confidence 7888999999 89 99999999 9999999999999999999755 6677889999999999 89999999
Q ss_pred EEEec-C----CcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1568 LLSSS-S----QDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1568 LaSSs-D----gtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
|+++. + +.|++||. ++.+..+.+| ++++|+|+++ +++++ +.|+.|++||+.+++.+.++.
T Consensus 131 l~~~~~~~~~~~~v~~~d~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~v~vwd~~~~~~~~~~~--- 200 (615)
T 1pgu_A 131 LCVVGEGRDNFGVFISWDS----GNSLGEVSGHSQRINACHLKQSRPMRSMTV---GDDGSVVFYQGPPFKFSASDR--- 200 (615)
T ss_dssp EEEEECCSSCSEEEEETTT----CCEEEECCSCSSCEEEEEECSSSSCEEEEE---ETTTEEEEEETTTBEEEEEEC---
T ss_pred EEEeccCCCCccEEEEEEC----CCcceeeecCCccEEEEEECCCCCcEEEEE---eCCCcEEEEeCCCcceeeeec---
Confidence 99854 4 68999993 4567777765 7899999997 78888 889999999999999988875
Q ss_pred ccccCCCC---cceEEEEcCC-CCeEeecc-----EEEEcCCCcceeee-c---cCCCce-EEEEecCCCEEEEEe----
Q 000177 1638 VNLTGRGH---AYSQIHFSPS-DTMLLWNG-----ILWDRRNSVPVHRF-D---QFTDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1638 ~~~~~~gh---~~~vVaFSPd-G~lLaSgg-----rLWDlrtgk~I~kf-~---gh~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
.+.. ....++|+|+ +++|++++ ++||+++++.+..+ . .|...+ ++.|+ ++.+|++++
T Consensus 201 ----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 201 ----THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT 275 (615)
T ss_dssp ----SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSE
T ss_pred ----ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCc
Confidence 1122 4455999999 99999776 99999999999999 6 788888 99999 999999998
Q ss_pred -EEEecCCCeEEEEEcCCC----c--eeEEEccCCCEEEEEEccC
Q 000177 1700 -EVWDLRKFRLLRSVPSLD----Q--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 -eIWDLrTgklL~tl~gH~----~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
++||+++++.+..+..+. . .++.|+ ++.+++++..+.
T Consensus 276 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g 319 (615)
T 1pgu_A 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDG 319 (615)
T ss_dssp EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTS
T ss_pred EEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCC
Confidence 599999999999998762 1 577775 888999886443
No 85
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.90 E-value=9.6e-22 Score=227.89 Aligned_cols=208 Identities=10% Similarity=0.061 Sum_probs=168.6
Q ss_pred CccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee--eccCCCCeeEEEeee
Q 000177 1484 VHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES--CTSHQAPVTLVQSHL 1561 (1922)
Q Consensus 1484 ~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t--L~gHss~VtsLq~af 1561 (1922)
.++....+.+....++.+.++.+|. ..|++++|+|++++|++|+.||.|++||+.+++.... +..|...|+++ .|
T Consensus 28 ~d~~v~i~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~--~~ 104 (372)
T 1k8k_C 28 NNHEVHIYEKSGNKWVQVHELKEHN-GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCV--RW 104 (372)
T ss_dssp SSSEEEEEEEETTEEEEEEEEECCS-SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEE--EE
T ss_pred CCCEEEEEeCCCCcEEeeeeecCCC-CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEE--EE
Confidence 3333334433222334888999999 9999999999999999999999999999988875544 47899999999 88
Q ss_pred cCCCcEEEEe-cCCcEEEeccCCCCCCc---ceEe-cc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECC-------
Q 000177 1562 SGETQLLLSS-SSQDVHLWNASSIAGGP---MHSF-EG----CKAARFSNSGNLFAALPTETSDRGILLYDIQ------- 1625 (1922)
Q Consensus 1562 SpDG~lLaSS-sDgtVkLWDl~t~~gk~---l~tf-~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr------- 1625 (1922)
+|++++|+++ .|+.|++||+.. ... ...+ .. +.+++|+|++++|+++ +.|+.|++||++
T Consensus 105 ~~~~~~l~~~~~d~~v~i~d~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~i~~~d~~~~~~~~~ 179 (372)
T 1k8k_C 105 APNEKKFAVGSGSRVISICYFEQ--ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG---SCDFKCRIFSAYIKEVEER 179 (372)
T ss_dssp CTTSSEEEEEETTSSEEEEEEET--TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE---ETTSCEEEEECCCTTTSCC
T ss_pred CCCCCEEEEEeCCCEEEEEEecC--CCcceeeeeeecccCCCeeEEEEcCCCCEEEEE---cCCCCEEEEEccccccccc
Confidence 9999999985 599999999987 442 2222 22 4889999999999999 789999999964
Q ss_pred -----------CCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEE
Q 000177 1626 -----------TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGF 1688 (1922)
Q Consensus 1626 -----------Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaF 1688 (1922)
+++.+..+. .+......++|+|++++|++++ ++||+++++++..+..|...+ +++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 252 (372)
T 1k8k_C 180 PAPTPWGSKMPFGELMFESS-------SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 252 (372)
T ss_dssp CCCBTTBSCCCTTCEEEECC-------CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred ccccccccccchhhheEecC-------CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEE
Confidence 556666554 1233455599999999999877 999999999999999998888 9999
Q ss_pred ecCCCEEEEEe----EEEecCC
Q 000177 1689 HPAGNEVIINS----EVWDLRK 1706 (1922)
Q Consensus 1689 SPdG~~LASGS----eIWDLrT 1706 (1922)
+|++.+|+++. .+|++.+
T Consensus 253 ~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 253 ITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EETTEEEEEETTSSCEEEEEET
T ss_pred ecCCCEEEEEeCCeEEEEEccC
Confidence 99999999887 5999987
No 86
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.90 E-value=3.4e-21 Score=229.79 Aligned_cols=289 Identities=12% Similarity=0.130 Sum_probs=223.7
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-----eeccCCCCeeEEEeeecCCCcEEEEe-
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-----SCTSHQAPVTLVQSHLSGETQLLLSS- 1571 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-----tL~gHss~VtsLq~afSpDG~lLaSS- 1571 (1922)
++.+..+..|. .+.+++|+|++.++++++.++.|++||+.+++... .+.+|...|+++ .|++++++++++
T Consensus 113 ~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~s~~ 188 (433)
T 3bws_A 113 HRFISRFKTGF--QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETI--SIPEHNELWVSQM 188 (433)
T ss_dssp EEEEEEEECSS--CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEE--EEGGGTEEEEEEG
T ss_pred ceEEEEEcCCC--CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEE--EEcCCCEEEEEEC
Confidence 35566666554 46699999988888999999999999999998877 456899999999 789999999996
Q ss_pred cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
.|+.|++||+.+ ++.+.++.. ..+++|+|+++++++++ +.|+.|++||+++++.+..+. .....
T Consensus 189 ~d~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~d~~~~~~~~~~~--------~~~~~ 256 (433)
T 3bws_A 189 QANAVHVFDLKT--LAYKATVDLTGKWSKILLYDPIRDLVYCSN--WISEDISVIDRKTKLEIRKTD--------KIGLP 256 (433)
T ss_dssp GGTEEEEEETTT--CCEEEEEECSSSSEEEEEEETTTTEEEEEE--TTTTEEEEEETTTTEEEEECC--------CCSEE
T ss_pred CCCEEEEEECCC--ceEEEEEcCCCCCeeEEEEcCCCCEEEEEe--cCCCcEEEEECCCCcEEEEec--------CCCCc
Confidence 489999999987 777777764 37899999999885541 578999999999998887775 12234
Q ss_pred eEEEEcCCCCeEeecc-------------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEE-e-----EEEecCCCe
Q 000177 1648 SQIHFSPSDTMLLWNG-------------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIIN-S-----EVWDLRKFR 1708 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-------------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASG-S-----eIWDLrTgk 1708 (1922)
..++|+|+|+++++++ ++||+++++.+..+.......+++|+|+|++++.. + .+||+.+++
T Consensus 257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE
T ss_pred eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc
Confidence 4599999999888654 49999999887766333333389999999876554 4 599999999
Q ss_pred EEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCC
Q 000177 1709 LLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1709 lL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdd 1787 (1922)
.+..++.... .+++|+|+|++++++........ .........+..+.+||..+.+.+..+.....+..++|+|++
T Consensus 337 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~----~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg 412 (433)
T 3bws_A 337 VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPT----EGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDN 412 (433)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTT----TCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccc----cccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCC
Confidence 9988874333 89999999999998854321100 001112334568899999888888888887889999999999
Q ss_pred ceEEEEecCCCCCccceEEEEEec
Q 000177 1788 SFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1788 s~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.++++... .+..+++|++.
T Consensus 413 ~~l~~~~~-----~d~~i~v~~~~ 431 (433)
T 3bws_A 413 RYLVISDF-----LDHQIRVYRRD 431 (433)
T ss_dssp CEEEEEET-----TTTEEEEEEET
T ss_pred CEEEEEEC-----CCCeEEEEEec
Confidence 99987642 24789999874
No 87
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.90 E-value=6.6e-22 Score=235.66 Aligned_cols=266 Identities=12% Similarity=0.153 Sum_probs=201.7
Q ss_pred CEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC----CceeeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEeccCC
Q 000177 1511 LLTCITFLGDSSH-IAVGSHTKELKIFDSNSS----SPLESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~l-LASGS~DGtIkIWDl~tg----k~l~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWDl~t 1583 (1922)
...+++++|+... +++|+.||.|+||++.+. ..+..+.+|...|+++ .|+| ++++|+++ .|++|+|||+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~--~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDI--AWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEE--EECTTCTTEEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEE--EeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 3457889987764 446899999999999654 3456778999999999 8899 89999985 599999999987
Q ss_pred CCC-----CcceEeccc----eeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEc
Q 000177 1584 IAG-----GPMHSFEGC----KAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1584 ~~g-----k~l~tf~gh----~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
... .++..+.+| ++++|+|++ ++|+++ +.|++|++||+++++.+.++.. ..+...+..++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA---GCDNVILVWDVGTGAAVLTLGP-----DVHPDTIYSVDWS 185 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE---ETTSCEEEEETTTTEEEEEECT-----TTCCSCEEEEEEC
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE---cCCCEEEEEECCCCCccEEEec-----CCCCCceEEEEEC
Confidence 211 566777765 789999998 689998 8899999999999998887720 0123345559999
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeee-ccCCCc-e-EEEEecCCCEEEEE---e-----EEEecCCCeE-EEEEc-C
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRF-DQFTDH-G-GGGFHPAGNEVIIN---S-----EVWDLRKFRL-LRSVP-S 1715 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf-~gh~~~-V-sVaFSPdG~~LASG---S-----eIWDLrTgkl-L~tl~-g 1715 (1922)
|++++|++++ ++||+++++.+..+ ..|... + ++.|+|+|.+|++| + .+||+++++. +.... .
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~ 265 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD 265 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence 9999999877 99999999999998 788765 4 99999999999998 3 4999998654 32222 2
Q ss_pred CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc----eeeeeccCCceEEEEEcCCCce
Q 000177 1716 LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS----DIATIPVDRCVLDFATERTDSF 1789 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys----~IaTidvkr~I~dLa~SPdds~ 1789 (1922)
+.. .+++|+|+|.+|+++...+ ..+++|+..+.. .+..+.....|..++|+|++.+
T Consensus 266 ~~~~v~~~~~s~~~~~l~~~g~~d------------------g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~ 327 (402)
T 2aq5_A 266 TSSGVLLPFFDPDTNIVYLCGKGD------------------SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGL 327 (402)
T ss_dssp CCSSCEEEEEETTTTEEEEEETTC------------------SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGS
T ss_pred CCCceeEEEEcCCCCEEEEEEcCC------------------CeEEEEEecCCCcceEeecccccCCcccceEEeccccc
Confidence 322 7999999999998664322 345566655544 2333334577999999999987
Q ss_pred EEEEecCCCCCccceEEEEEecC
Q 000177 1790 VGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1790 LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
++. .+..+++|++..
T Consensus 328 ~~s--------~~~~~~~~~l~~ 342 (402)
T 2aq5_A 328 EVN--------KCEIARFYKLHE 342 (402)
T ss_dssp CGG--------GTEEEEEEEEET
T ss_pred cee--------cceeEEEEEcCC
Confidence 651 224788887643
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-21 Score=236.98 Aligned_cols=267 Identities=9% Similarity=0.051 Sum_probs=204.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceeeecc-------------------------------------
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---PLESCTS------------------------------------- 1549 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---~l~tL~g------------------------------------- 1549 (1922)
.+|+|++|+++|++|+++ .++.|++||+.+|+ .+.++..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 458899999999966655 57899999999998 6655543
Q ss_pred -----------------CCCCeeEEEeeecCCCcEE-EEe-cCCcEEEeccC--CCCCCcceEecc------ceeEEEcC
Q 000177 1550 -----------------HQAPVTLVQSHLSGETQLL-LSS-SSQDVHLWNAS--SIAGGPMHSFEG------CKAARFSN 1602 (1922)
Q Consensus 1550 -----------------Hss~VtsLq~afSpDG~lL-aSS-sDgtVkLWDl~--t~~gk~l~tf~g------h~sVaFSP 1602 (1922)
|.+.|+++ +|+|++++| +++ .|++|+|||+. + +.++..+.. +.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~--~~s~d~~~l~~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNL--RLTSDESRLIACADSDKSLLVFDVDKTS--KNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp ----------------CCCCCEEEE--EECTTSSEEEEEEGGGTEEEEEEECSSS--SSCEEEEEEEECSSCEEEEEECT
T ss_pred ccccCccccCCCCCCCccCCceEEE--EEcCCCCEEEEEECCCCeEEEEECcCCC--CceeeeeecccCCCCceEEEEcC
Confidence 34479999 899999996 666 59999999998 5 677777642 37899999
Q ss_pred CCCEEEEeecCCCCCeEEEEECCCCceee----eeccccccccCCCCcceEEEEcCC---CCeEeecc-----EEEEcCC
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQTYQLEA----KLSDTSVNLTGRGHAYSQIHFSPS---DTMLLWNG-----ILWDRRN 1670 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrTgk~i~----tL~d~s~~~~~~gh~~~vVaFSPd---G~lLaSgg-----rLWDlrt 1670 (1922)
++++|+++ +.|+.|++||+.+++... .+. ++...+..++|+|+ +++|++++ ++||+++
T Consensus 160 ~~~~l~~~---~~~g~v~~~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~ 229 (450)
T 2vdu_B 160 DDTTVIIA---DKFGDVYSIDINSIPEEKFTQEPIL-------GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ 229 (450)
T ss_dssp TSSEEEEE---ETTSEEEEEETTSCCCSSCCCCCSE-------ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC
T ss_pred CCCEEEEE---eCCCcEEEEecCCcccccccceeee-------cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC
Confidence 99999999 779999999999877543 332 12334555999999 99999887 9999999
Q ss_pred Ccceee-eccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC---------------------------
Q 000177 1671 SVPVHR-FDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL--------------------------- 1716 (1922)
Q Consensus 1671 gk~I~k-f~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH--------------------------- 1716 (1922)
++++.. +.+|...+ +++|+ +|++|++++ +|||+++++++.++..+
T Consensus 230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp TTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred CceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 998888 55888888 99999 999999999 59999999999888632
Q ss_pred CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEec--CCC---ceeeeeccCCceEEEEEcCCCceEE
Q 000177 1717 DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDA--INY---SDIATIPVDRCVLDFATERTDSFVG 1791 (1922)
Q Consensus 1717 ~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da--~dy---s~IaTidvkr~I~dLa~SPdds~LA 1791 (1922)
....++|+|+|++|+++...+ ..+++|+. ... ..+.++.....|.+++|+|+ ..++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d------------------~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~v 369 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEAT------------------KCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND-EFQV 369 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTC------------------SEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT-EEEE
T ss_pred EEEEEEEeCCCCEEEEEECCC------------------CeEEEEEeccCCCCceeeccEeccCCceEEEEecCC-cEEE
Confidence 126899999999999985322 23455555 222 55666666778999999995 4444
Q ss_pred EEecCC-CCCccceEEEEEec
Q 000177 1792 LITMDD-QEDMFSSARIYEIG 1811 (1922)
Q Consensus 1792 VVe~dd-s~d~dSsVRLyEVG 1811 (1922)
.+...+ .......+++|.+.
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEE
T ss_pred EEecccCCCCCCcceEEEEEE
Confidence 443221 11124568899864
No 89
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.89 E-value=6.4e-22 Score=233.04 Aligned_cols=221 Identities=15% Similarity=0.185 Sum_probs=174.5
Q ss_pred cCceeeEEec--CCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeecc---CCCCeeEEEeeecCCCcEEE
Q 000177 1496 SRFRPWRTCR--DDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTS---HQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1496 srfrpirtLr--gH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~g---Hss~VtsLq~afSpDG~lLa 1569 (1922)
...+....+. +|. +.|++++|+| ++++|++|+.|++|++||+.+ ..+..+.. |...|+++ .|+|++++|+
T Consensus 104 ~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~ 179 (383)
T 3ei3_B 104 DVQNKTSFIQGMGPG-DAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCV--DVSVSRQMLA 179 (383)
T ss_dssp TSTTCEEEECCCSTT-CBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEE--EEETTTTEEE
T ss_pred CCcccceeeecCCcC-CceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEE--EECCCCCEEE
Confidence 3344444444 799 9999999999 789999999999999999985 55556644 45889999 8899999999
Q ss_pred Ee-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCC----Cceeeeecccccc
Q 000177 1570 SS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQT----YQLEAKLSDTSVN 1639 (1922)
Q Consensus 1570 SS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrT----gk~i~tL~d~s~~ 1639 (1922)
++ .|+.|++||+. ++++..+.+| .+++|+|+++ +|+++ +.|++|++||+++ +.++..+.
T Consensus 180 ~~~~d~~i~i~d~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~----- 248 (383)
T 3ei3_B 180 TGDSTGRLLLLGLD---GHEIFKEKLHKAKVTHAEFNPRCDWLMATS---SVDATVKLWDLRNIKDKNSYIAEMP----- 248 (383)
T ss_dssp EEETTSEEEEEETT---SCEEEEEECSSSCEEEEEECSSCTTEEEEE---ETTSEEEEEEGGGCCSTTCEEEEEE-----
T ss_pred EECCCCCEEEEECC---CCEEEEeccCCCcEEEEEECCCCCCEEEEE---eCCCEEEEEeCCCCCcccceEEEec-----
Confidence 95 59999999994 5677777764 7899999998 89998 8899999999998 55555553
Q ss_pred ccCCCCcceEEEEcC-CCCeEeecc-----EEEEcCCCcceeeeccCC-------CceEEEEecCCCEEE---------E
Q 000177 1640 LTGRGHAYSQIHFSP-SDTMLLWNG-----ILWDRRNSVPVHRFDQFT-------DHGGGGFHPAGNEVI---------I 1697 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtgk~I~kf~gh~-------~~VsVaFSPdG~~LA---------S 1697 (1922)
+...+..++|+| ++++|++++ ++||+++++.+..+.+|. ..+.+.|+|++..++ +
T Consensus 249 ---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s 325 (383)
T 3ei3_B 249 ---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLL 325 (383)
T ss_dssp ---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTC
T ss_pred ---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccc
Confidence 344556699999 999999877 999999998877776553 223345555554444 3
Q ss_pred Ee-----EEEecCCCeEEEEEcCCC--c--eeEEEccCCCEEEEEE
Q 000177 1698 NS-----EVWDLRKFRLLRSVPSLD--Q--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~gH~--~--~sVaFSPdG~~LaSgs 1734 (1922)
++ +|||+.+++++.++.++. . ..++|+|+|++|+++.
T Consensus 326 ~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s 371 (383)
T 3ei3_B 326 LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371 (383)
T ss_dssp TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE
T ss_pred cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec
Confidence 33 599999999999998754 2 5779999999999984
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.89 E-value=2.1e-21 Score=220.20 Aligned_cols=233 Identities=14% Similarity=0.211 Sum_probs=184.1
Q ss_pred ceeeecCceeeEEec--CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1491 RQFVYSRFRPWRTCR--DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1491 r~fi~srfrpirtLr--gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
+-|...+++.+++++ +|. ..|++++|+|++++|++|+.||+|+|||+.+++++.++.+|...+.++ .+ ++.++
T Consensus 48 ~iWd~~tg~~~~~~~~~~~~-~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~--~~--~~~~l 122 (318)
T 4ggc_A 48 YLWSASSGDILQLLQMEQPG-EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL--SW--NSYIL 122 (318)
T ss_dssp EEEETTTCCEEEEEECCSTT-CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EE--ETTEE
T ss_pred EEEECCCCCEEEEEEecCCC-CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEe--ec--CCCEE
Confidence 334455667677665 577 889999999999999999999999999999999999999999998887 44 56788
Q ss_pred EEe-cCCcEEEeccCCCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1569 LSS-SSQDVHLWNASSIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1569 aSS-sDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+++ .++.+++|+.... ...+..+.+| ..+.|++++++|+++ +.|++|++||+++++....... ....+
T Consensus 123 ~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---~~d~~i~iwd~~~~~~~~~~~~---~~~~~ 195 (318)
T 4ggc_A 123 SSGSRSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPDGRHLASG---GNDNLVNVWPSAPGEGGWVPLQ---TFTQH 195 (318)
T ss_dssp EEEETTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTTSSEEEEE---ETTSCEEEEESSCBTTBSCCSE---EECCC
T ss_pred EEEecCCceEeeecCCC-ceeEEEEcCccCceEEEEEcCCCCEEEEE---ecCcceeEEECCCCccccccee---eeccc
Confidence 885 5999999998762 3445556554 778999999999999 8899999999998765433220 01112
Q ss_pred CCcceEEEEcCCCCeEe---ecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-------EEEecCCCe
Q 000177 1644 GHAYSQIHFSPSDTMLL---WNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-------EVWDLRKFR 1708 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLa---Sgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-------eIWDLrTgk 1708 (1922)
...+..+.++|++..++ +++ ++||.+.......+..+.....+.|+|++.++++++ +|||+++++
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~ 275 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA 275 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCc
Confidence 33445588999876554 333 899999888777665555444999999999988765 599999999
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
++.++.+|.. ++++|+|+|++|++++.
T Consensus 276 ~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 276 KVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 9999999987 89999999999999863
No 91
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.89 E-value=3.7e-21 Score=220.19 Aligned_cols=221 Identities=18% Similarity=0.323 Sum_probs=184.4
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
..+.+++++|. ..|++++|+|+|++|++|+.|+.|++|+............|...+..+ .+++++.+|+++ .|+.+
T Consensus 76 ~~~~~~l~~h~-~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 76 GIPQRALRGHS-HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV--AFSSDNRQIVSGSRDKTI 152 (340)
T ss_dssp EEEEEEECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--EECTTSSCEEEEETTSCE
T ss_pred ceeeEEEeCCC-CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEE--EEeecCccceeecCCCeE
Confidence 35678899999 999999999999999999999999999999998888888888999988 789999988885 69999
Q ss_pred EEeccCCCCCCc-ceEecc----ceeEEEcCCC--CEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc--c
Q 000177 1577 HLWNASSIAGGP-MHSFEG----CKAARFSNSG--NLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA--Y 1647 (1922)
Q Consensus 1577 kLWDl~t~~gk~-l~tf~g----h~sVaFSPDG--~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~--~ 1647 (1922)
++||+.. ... ...+.+ +..++|++++ .+++++ +.|++|++||+++++.+..+. +|. +
T Consensus 153 ~~~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~---~~d~~i~i~d~~~~~~~~~~~---------~h~~~v 218 (340)
T 4aow_A 153 KLWNTLG--VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC---GWDKLVKVWNLANCKLKTNHI---------GHTGYL 218 (340)
T ss_dssp EEECTTS--CEEEEECSSSCSSCEEEEEECSCSSSCEEEEE---ETTSCEEEEETTTTEEEEEEC---------CCSSCE
T ss_pred EEEEeCC--CceEEEEeccccCcccceEEccCCCCcEEEEE---cCCCEEEEEECCCCceeeEec---------CCCCcE
Confidence 9999975 222 222333 3678898864 567787 789999999999999888875 444 4
Q ss_pred eEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe----EEEecCCCeEEEEEc----
Q 000177 1648 SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS----EVWDLRKFRLLRSVP---- 1714 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS----eIWDLrTgklL~tl~---- 1714 (1922)
..++|+|++++|++++ ++||+++++++..+..+....++.|+|++.+++++. +|||++++..+..+.
T Consensus 219 ~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 298 (340)
T 4aow_A 219 NTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVI 298 (340)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC--
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccce
Confidence 4599999999999887 899999999999998776545999999998887776 599999988887765
Q ss_pred -----CCCc--eeEEEccCCCEEEEEEc
Q 000177 1715 -----SLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1715 -----gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
+|.. ++++|+|+|++|++++.
T Consensus 299 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~ 326 (340)
T 4aow_A 299 STSSKAEPPQCTSLAWSADGQTLFAGYT 326 (340)
T ss_dssp -----CCCCCEEEEEECTTSSEEEEEET
T ss_pred eeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence 3433 79999999999999863
No 92
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.89 E-value=7.7e-22 Score=235.06 Aligned_cols=218 Identities=15% Similarity=0.227 Sum_probs=178.5
Q ss_pred eeeEEecCCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------CceeeeccCCCCeeEEEeeecCCC-cEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSS-------SPLESCTSHQAPVTLVQSHLSGET-QLLL 1569 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tg-------k~l~tL~gHss~VtsLq~afSpDG-~lLa 1569 (1922)
..+.++.+|. +.|++++|+| ++++|++|+.||+|+|||+.++ +.+..+.+|...|+++ .|+|++ .+|+
T Consensus 72 ~~~~~~~~h~-~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~p~~~~~l~ 148 (402)
T 2aq5_A 72 KNVPLVCGHT-APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV--AWHPTAQNVLL 148 (402)
T ss_dssp TTCCCBCCCS-SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE--EECSSBTTEEE
T ss_pred CCCceEecCC-CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEE--EECcCCCCEEE
Confidence 3456688999 9999999999 9999999999999999999988 6678899999999999 889998 5787
Q ss_pred E-ecCCcEEEeccCCCCCCcceEe--ccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSF--EGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf--~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
+ +.|++|++||+.+ ++++..+ .+| .+++|+|++++|+++ +.|+.|++||+++++.+..+.
T Consensus 149 s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~-------- 215 (402)
T 2aq5_A 149 SAGCDNVILVWDVGT--GAAVLTLGPDVHPDTIYSVDWSRDGALICTS---CRDKRVRVIEPRKGTVVAEKD-------- 215 (402)
T ss_dssp EEETTSCEEEEETTT--TEEEEEECTTTCCSCEEEEEECTTSSCEEEE---ETTSEEEEEETTTTEEEEEEE--------
T ss_pred EEcCCCEEEEEECCC--CCccEEEecCCCCCceEEEEECCCCCEEEEE---ecCCcEEEEeCCCCceeeeec--------
Confidence 7 5699999999998 7778887 444 789999999999999 889999999999999888773
Q ss_pred CCCc---ceEEEEcCCCCeEeec---c-----EEEEcCCCcc-eeeec-cCCCce-EEEEecCCCEEEEEe------EEE
Q 000177 1643 RGHA---YSQIHFSPSDTMLLWN---G-----ILWDRRNSVP-VHRFD-QFTDHG-GGGFHPAGNEVIINS------EVW 1702 (1922)
Q Consensus 1643 ~gh~---~~vVaFSPdG~lLaSg---g-----rLWDlrtgk~-I~kf~-gh~~~V-sVaFSPdG~~LASGS------eIW 1702 (1922)
.+|. ...+.|+|++++|+++ + ++||+++++. +..+. .+...+ ++.|+|+|++|++++ ++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~ 295 (402)
T 2aq5_A 216 RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYF 295 (402)
T ss_dssp CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEE
T ss_pred cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEE
Confidence 1233 4559999999999987 3 8999998764 43333 344445 999999999996543 599
Q ss_pred ecCCCeE-EEEEcCCC--c--eeEEEccCCCEEEE
Q 000177 1703 DLRKFRL-LRSVPSLD--Q--TTITFNARGDVIYA 1732 (1922)
Q Consensus 1703 DLrTgkl-L~tl~gH~--~--~sVaFSPdG~~LaS 1732 (1922)
|+.+++. +..+..|. . ++++|+|++.++++
T Consensus 296 d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 296 EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG
T ss_pred EecCCCcceEeecccccCCcccceEEeccccccee
Confidence 9998873 44444332 2 89999999987764
No 93
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.9e-21 Score=216.11 Aligned_cols=220 Identities=13% Similarity=0.200 Sum_probs=179.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---CceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSS---SPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg---k~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
.|.....+....+..|. ..|++++|+|++++|++|+.||.|++|++... +.+..+.+|...|.++ .| ++.+|
T Consensus 43 vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~--~~~~l 117 (313)
T 3odt_A 43 LWSKDDQWLGTVVYTGQ-GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSL--SF--QDGVV 117 (313)
T ss_dssp EEEESSSEEEEEEEECS-SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEE--EE--ETTEE
T ss_pred EEECCCCEEEEEeecCC-ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEE--Ee--cCCEE
Confidence 34446677788888998 99999999999999999999999999998654 5677889999999999 56 45677
Q ss_pred EE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1569 LS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1569 aS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
++ +.|+.|++||. +..+..+..| .++.|+| ++++++++ +.|+.|++|| .++....+. ..
T Consensus 118 ~~~~~d~~i~~~d~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~d~~i~i~d--~~~~~~~~~------~~ 182 (313)
T 3odt_A 118 ISGSWDKTAKVWKE----GSLVYNLQAHNASVWDAKVVSFSENKFLTA---SADKTIKLWQ--NDKVIKTFS------GI 182 (313)
T ss_dssp EEEETTSEEEEEET----TEEEEEEECCSSCEEEEEEEETTTTEEEEE---ETTSCEEEEE--TTEEEEEEC------SS
T ss_pred EEEeCCCCEEEEcC----CcEEEecccCCCceeEEEEccCCCCEEEEE---ECCCCEEEEe--cCceEEEEe------cc
Confidence 77 56999999993 4566666654 6788888 89999999 8899999999 344555554 11
Q ss_pred CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEE
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLR 1711 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~ 1711 (1922)
+......++|+|++. +++++ ++||+++++++..+.+|...+ +++|+|+|. |++++ ++||+++++++.
T Consensus 183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 260 (313)
T 3odt_A 183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQ 260 (313)
T ss_dssp CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEE
T ss_pred CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeE
Confidence 234455699999999 55554 999999999999999999988 999999995 66766 599999999999
Q ss_pred EEcCCCc--eeEEEccCCCEEEEE
Q 000177 1712 SVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1712 tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.+..|.. ++++|+|+|++++++
T Consensus 261 ~~~~~~~~i~~~~~~~~~~~~~~~ 284 (313)
T 3odt_A 261 VITLPAISIWSVDCMSNGDIIVGS 284 (313)
T ss_dssp EEECSSSCEEEEEECTTSCEEEEE
T ss_pred EEeccCceEEEEEEccCCCEEEEe
Confidence 9998875 899999999965533
No 94
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.88 E-value=5.9e-22 Score=231.98 Aligned_cols=208 Identities=12% Similarity=0.085 Sum_probs=160.2
Q ss_pred cCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---ceeeeccCCCCeeEEE
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---PLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---~l~tL~gHss~VtsLq 1558 (1922)
++.++....+.+....++.+.++.+|. +.|++++|+|++++|++|+.||+|+|||+.+++ ....+.+|...|+++
T Consensus 29 ~~~d~~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~- 106 (377)
T 3dwl_C 29 TTATNQVELYEQDGNGWKHARTFSDHD-KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFV- 106 (377)
T ss_dssp CCSSSCBCEEEEETTEEEECCCBCCCS-SCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEE-
T ss_pred ecCCCEEEEEEccCCceEEEEEEecCC-ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEE-
Confidence 334444444443322227788899999 999999999999999999999999999999877 677788999999999
Q ss_pred eeecCCCcEEEEe-cCCcEEEeccCCCCCC---cceEecc-c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc-
Q 000177 1559 SHLSGETQLLLSS-SSQDVHLWNASSIAGG---PMHSFEG-C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQ- 1628 (1922)
Q Consensus 1559 ~afSpDG~lLaSS-sDgtVkLWDl~t~~gk---~l~tf~g-h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk- 1628 (1922)
.|+|++++|+++ .|++|++||+.+ ++ +...+.+ | ++++|+|++++|+++ +.|++|++||+.++.
T Consensus 107 -~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~ 180 (377)
T 3dwl_C 107 -RWSPNEDKFAVGSGARVISVCYFEQ--ENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG---CADRKAYVLSAYVRDV 180 (377)
T ss_dssp -ECCTTSSCCEEEESSSCEEECCC-------CCCCEEECSSCCSCEEEEEECTTSSEEEEE---ESSSCEEEEEECCSSC
T ss_pred -EECCCCCEEEEEecCCeEEEEEECC--cccceeeeEeecccCCCeEEEEEcCCCCEEEEE---eCCCEEEEEEEEeccc
Confidence 889999988885 599999999987 44 3566655 3 789999999999999 889999999996433
Q ss_pred -----------------eeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcc----eeeeccCCC
Q 000177 1629 -----------------LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVP----VHRFDQFTD 1682 (1922)
Q Consensus 1629 -----------------~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~----I~kf~gh~~ 1682 (1922)
++..+ .+...+..++|+|++++|++++ ++||+++++. +..+.+|..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 252 (377)
T 3dwl_C 181 DAKPEASVWGSRLPFNTVCAEY--------PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL 252 (377)
T ss_dssp C-CCCSCSSCSCCCEEEEEECC--------CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS
T ss_pred CCCccccccccccchhhhhhcc--------cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC
Confidence 22211 2334455599999999999887 8999999987 889999998
Q ss_pred ce-EEEEecCCCEEEEEe----EEEecC
Q 000177 1683 HG-GGGFHPAGNEVIINS----EVWDLR 1705 (1922)
Q Consensus 1683 ~V-sVaFSPdG~~LASGS----eIWDLr 1705 (1922)
.+ +++|+|+|++|++++ .+|+..
T Consensus 253 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 253 PLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp CEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred ceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 88 999999999999998 377765
No 95
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.88 E-value=5.2e-21 Score=230.99 Aligned_cols=258 Identities=15% Similarity=0.230 Sum_probs=198.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccC
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNAS 1582 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~ 1582 (1922)
..+|. ..|+|+.| ++++|++|+.||+|++||+.+++...++.+|...|+++ .| ++++|+++ .|++|++||+.
T Consensus 129 ~~~~~-~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l--~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 129 RSETS-KGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL--QY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCSSC-CCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEE--EC--CSSEEEEEETTSCEEEEESS
T ss_pred ccCCC-CcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEE--EE--CCCEEEEEcCCCeEEEEECC
Confidence 34576 78999887 78999999999999999999999999999999999999 55 77788885 69999999999
Q ss_pred CCCCCcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1583 SIAGGPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1583 t~~gk~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
+ ++++.++.+| .++.|+ +.+++++ +.|++|++||+.++....... ...+|...+.++..++++
T Consensus 202 ~--~~~~~~~~~h~~~v~~l~~~--~~~l~s~---s~dg~i~vwd~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~ 268 (435)
T 1p22_A 202 T--GEMLNTLIHHCEAVLHLRFN--NGMMVTC---SKDRSIAVWDMASPTDITLRR------VLVGHRAAVNVVDFDDKY 268 (435)
T ss_dssp S--CCEEEEECCCCSCEEEEECC--TTEEEEE---ETTSCEEEEECSSSSCCEEEE------EECCCSSCEEEEEEETTE
T ss_pred C--CcEEEEEcCCCCcEEEEEEc--CCEEEEe---eCCCcEEEEeCCCCCCceeee------EecCCCCcEEEEEeCCCE
Confidence 8 7888888765 667776 4689998 889999999999887653211 012565555444448889
Q ss_pred Eeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEcc
Q 000177 1659 LLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNA 1725 (1922)
Q Consensus 1659 LaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSP 1725 (1922)
+++++ ++||+++++++.++.+|...+ ++.| ++.+|++|+ ++||+++++++.++.+|.. ++++|
T Consensus 269 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-- 344 (435)
T 1p22_A 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-- 344 (435)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--
T ss_pred EEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--
Confidence 99877 999999999999999999888 7887 468999998 5999999999999999887 67777
Q ss_pred CCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc---------eeeeecc-CCceEEEEEcCCCceEEEEec
Q 000177 1726 RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS---------DIATIPV-DRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1726 dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys---------~IaTidv-kr~I~dLa~SPdds~LAVVe~ 1795 (1922)
++.+|+++..+.. +++||..+.. .+.++.. ...|..++| ++.++++.
T Consensus 345 ~~~~l~sg~~dg~-------------------i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~-- 401 (435)
T 1p22_A 345 DNKRIVSGAYDGK-------------------IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSS-- 401 (435)
T ss_dssp CSSEEEEEETTSC-------------------EEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEEC--
T ss_pred cCCEEEEEeCCCc-------------------EEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEE--
Confidence 7889999864432 3333322221 3333332 446888888 56666643
Q ss_pred CCCCCccceEEEEEecC
Q 000177 1796 DDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1796 dds~d~dSsVRLyEVGr 1812 (1922)
..++.+++|++..
T Consensus 402 ----s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 402 ----SHDDTILIWDFLN 414 (435)
T ss_dssp ----CSSSEEEEEC---
T ss_pred ----eCCCEEEEEECCC
Confidence 3457899998743
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.88 E-value=5.4e-21 Score=219.84 Aligned_cols=228 Identities=15% Similarity=0.215 Sum_probs=182.0
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
......+.+|. +.|++++|+|++++|++|+.||.|++||+.+++.+. +.+|...|+++.|..++++++|+++ .|++|
T Consensus 76 ~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 76 QTIPKAQQMHT-GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp CEEEEEEEECS-SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred ceeEEEecccc-CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 33447888999 999999999999999999999999999999887665 5679999999944449999988885 59999
Q ss_pred EEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1577 HLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
++||+++ ++++..+..+ ....+.+.+..++++ +.++.+++||++......... .....+...++.+.++
T Consensus 154 ~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 154 KFWDTRS--SNPMMVLQLPERCYCADVIYPMAVVA---TAERGLIVYQLENQPSEFRRI-----ESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EEECSSC--SSCSEEEECSSCEEEEEEETTEEEEE---EGGGCEEEEECSSSCEEEEEC-----CCSCSSCEEEEEEEEC
T ss_pred EEEECCC--CcEEEEEecCCCceEEEecCCeeEEE---eCCCcEEEEEeccccchhhhc-----cccccCCCceEEEccc
Confidence 9999998 7788887764 333344445577777 678999999999765443322 1123456666666665
Q ss_pred CCe----Eeecc-----EEEEcCCC---cceeeeccCCC------------ce-EEEEecCCCEEEEEe-----EEEecC
Q 000177 1656 DTM----LLWNG-----ILWDRRNS---VPVHRFDQFTD------------HG-GGGFHPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1656 G~l----LaSgg-----rLWDlrtg---k~I~kf~gh~~------------~V-sVaFSPdG~~LASGS-----eIWDLr 1705 (1922)
... +++++ ++||++.. +.+..+.+|.. .+ +++|+|+|++|++++ ++||+.
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 544 66665 99999987 56778888775 46 999999999999998 599999
Q ss_pred CCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1706 KFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1706 TgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
+++++.++.+|.. ++++|+|+|.+|++++.++
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 304 ARTKLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp TTEEEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred CCcEEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 9999999998876 8999999999999997654
No 97
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=4.1e-20 Score=217.47 Aligned_cols=226 Identities=13% Similarity=0.164 Sum_probs=184.2
Q ss_pred ceeeecCceeeEEecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1491 RQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1491 r~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
+.|.....+.++.+..|. .+++++|+|+|++| ++++.|++|++||+.+++.+..+..|. .|.++ +|+|++++|+
T Consensus 15 ~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~--~~spdg~~l~ 89 (391)
T 1l0q_A 15 SVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV--AVSPDGKQVY 89 (391)
T ss_dssp EEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE--EECTTSSEEE
T ss_pred EEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce--EECCCCCEEE
Confidence 334455677788888776 48999999999977 677799999999999999988887665 89999 8999999775
Q ss_pred E-ec-CCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEE-EEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1570 S-SS-SQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLF-AALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1570 S-Ss-DgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~L-aSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
. +. +++|++||+.+ ++.+..+.. ..+++|+|+++++ +++ +.|+.|++||+.+++.+..+. .
T Consensus 90 ~~~~~~~~v~v~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~~v~~~d~~~~~~~~~~~--------~ 156 (391)
T 1l0q_A 90 VTNMASSTLSVIDTTS--NTVAGTVKTGKSPLGLALSPDGKKLYVTN---NGDKTVSVINTVTKAVINTVS--------V 156 (391)
T ss_dssp EEETTTTEEEEEETTT--TEEEEEEECSSSEEEEEECTTSSEEEEEE---TTTTEEEEEETTTTEEEEEEE--------C
T ss_pred EEECCCCEEEEEECCC--CeEEEEEeCCCCcceEEECCCCCEEEEEe---CCCCEEEEEECCCCcEEEEEe--------c
Confidence 4 54 79999999987 666666654 3789999999977 566 778999999999999888775 2
Q ss_pred CCcceEEEEcCCCCeEe-ecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--------EEEecCCCeE
Q 000177 1644 GHAYSQIHFSPSDTMLL-WNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--------EVWDLRKFRL 1709 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--------eIWDLrTgkl 1709 (1922)
+.....++|+|++++++ +++ ++||+++++.+..+..+....+++|+|+|++|++++ .+||+.+++.
T Consensus 157 ~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 33445699999998874 443 899999998888776554444999999999888775 3999999999
Q ss_pred EEEEcCCCc-eeEEEccCCCEEEEEE
Q 000177 1710 LRSVPSLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1710 L~tl~gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
+..++.+.. .+++|+|+|++|+++.
T Consensus 237 ~~~~~~~~~~~~~~~s~dg~~l~~s~ 262 (391)
T 1l0q_A 237 TARIPVGPDPAGIAVTPDGKKVYVAL 262 (391)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEE
T ss_pred EEEEecCCCccEEEEccCCCEEEEEc
Confidence 999987766 7899999999987653
No 98
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.88 E-value=3.8e-21 Score=221.21 Aligned_cols=209 Identities=15% Similarity=0.217 Sum_probs=160.2
Q ss_pred cCCccccccceeeecCceeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEE
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLV 1557 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsL 1557 (1922)
++.++..+.+.+.....+.+.+|.+|. +.|++++|++ ++++|++|+.||+|+|||+.+++ .+.++.+|...|+++
T Consensus 27 ~s~D~~v~iw~~~~~~~~~~~~l~gH~-~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v 105 (297)
T 2pm7_B 27 CSSDKTIKIFEVEGETHKLIDTLTGHE-GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSV 105 (297)
T ss_dssp EETTSCEEEEEBCSSCBCCCEEECCCS-SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEE
T ss_pred EeCCCEEEEEecCCCCcEEEEEEcccc-CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEE
Confidence 334444444433223456788999999 9999999986 48999999999999999998874 566788999999999
Q ss_pred EeeecCC--CcEEEE-ecCCcEEEeccCCCCCCcceEeccc----eeEEEcCC-------------CCEEEEeecCCCCC
Q 000177 1558 QSHLSGE--TQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC----KAARFSNS-------------GNLFAALPTETSDR 1617 (1922)
Q Consensus 1558 q~afSpD--G~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh----~sVaFSPD-------------G~~LaSgS~~S~Dg 1617 (1922)
.|+|+ +.+|++ +.|++|++||++.........+.+| ++++|+|+ +++|++| +.|+
T Consensus 106 --~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sg---s~D~ 180 (297)
T 2pm7_B 106 --QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG---GADN 180 (297)
T ss_dssp --EECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEE---ETTS
T ss_pred --EeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEE---cCCC
Confidence 78887 788888 5699999999986211123445544 78999997 5789998 8899
Q ss_pred eEEEEECCCCc----eeeeeccccccccCCCCcc--eEEEEcCCC---CeEeecc-----EEEEcCCCcc---eeee--c
Q 000177 1618 GILLYDIQTYQ----LEAKLSDTSVNLTGRGHAY--SQIHFSPSD---TMLLWNG-----ILWDRRNSVP---VHRF--D 1678 (1922)
Q Consensus 1618 tIrIWDlrTgk----~i~tL~d~s~~~~~~gh~~--~vVaFSPdG---~lLaSgg-----rLWDlrtgk~---I~kf--~ 1678 (1922)
+|++||+++++ ...++. +|.. ..++|+|++ .+|++++ ++||++++.. ...+ .
T Consensus 181 ~v~lwd~~~~~~~~~~~~~l~---------~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~ 251 (297)
T 2pm7_B 181 LVKIWKYNSDAQTYVLESTLE---------GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEE 251 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEEC---------CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSS
T ss_pred cEEEEEEcCCCceEEEEEEec---------CCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecc
Confidence 99999998876 334443 4554 459999995 7888877 9999987531 1223 4
Q ss_pred cCCCce-EEEEecCCCEEEEEe-----EEEecC
Q 000177 1679 QFTDHG-GGGFHPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1679 gh~~~V-sVaFSPdG~~LASGS-----eIWDLr 1705 (1922)
.|...+ +++|+|+|++|++++ +||+..
T Consensus 252 ~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 252 KFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 566777 999999999999998 599986
No 99
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.88 E-value=5e-20 Score=216.73 Aligned_cols=254 Identities=14% Similarity=0.159 Sum_probs=204.4
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE-EEe-cCCcEEEeccCCCCCCcceEecc---ce
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL-LSS-SSQDVHLWNASSIAGGPMHSFEG---CK 1596 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL-aSS-sDgtVkLWDl~t~~gk~l~tf~g---h~ 1596 (1922)
.++++++.|+.|++||+.+++.+..+.+|.. +.++ .|+|++++| +++ .|++|++||+.+ ++.+..+.. +.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~--~~s~dg~~l~~~~~~d~~i~v~d~~~--~~~~~~~~~~~~v~ 77 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGA--VISPDGTKVYVANAHSNDVSIIDTAT--NNVIATVPAGSSPQ 77 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEE--EECTTSSEEEEEEGGGTEEEEEETTT--TEEEEEEECSSSEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceE--EECCCCCEEEEECCCCCeEEEEECCC--CeEEEEEECCCCcc
Confidence 4688999999999999999999988887754 8899 899999876 455 599999999987 777777654 47
Q ss_pred eEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE-eecc-----EEEEcCC
Q 000177 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML-LWNG-----ILWDRRN 1670 (1922)
Q Consensus 1597 sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL-aSgg-----rLWDlrt 1670 (1922)
+++|+|++++++.++ ..++.|++||+.+++.+..+. .+.....++|+|+++++ ++++ ++||+.+
T Consensus 78 ~~~~spdg~~l~~~~--~~~~~v~v~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 147 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTN--MASSTLSVIDTTSNTVAGTVK--------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT 147 (391)
T ss_dssp EEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEEE--------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred ceEECCCCCEEEEEE--CCCCEEEEEECCCCeEEEEEe--------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence 899999999876551 567999999999999888775 22334559999999977 4544 9999999
Q ss_pred CcceeeeccCCCceEEEEecCCCEEE-EEe-----EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhh
Q 000177 1671 SVPVHRFDQFTDHGGGGFHPAGNEVI-INS-----EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMS 1743 (1922)
Q Consensus 1671 gk~I~kf~gh~~~VsVaFSPdG~~LA-SGS-----eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s 1743 (1922)
++.+..+..+....+++|+|+|++|+ +++ .+||+++++.+..+..+.. .+++|+|+|++|+++....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~------ 221 (391)
T 1l0q_A 148 KAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK------ 221 (391)
T ss_dssp TEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS------
T ss_pred CcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCc------
Confidence 99998888776666999999999885 444 5999999999888875544 7999999999999885211
Q ss_pred hhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1744 AVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1744 ~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
....+++||..+...+..+.....+..++|+|++.++.+... .+..+++|++.
T Consensus 222 ----------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~-----~d~~v~v~d~~ 274 (391)
T 1l0q_A 222 ----------YFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALS-----FXNTVSVIDTA 274 (391)
T ss_dssp ----------SCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET-----TTTEEEEEETT
T ss_pred ----------CCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcC-----CCCEEEEEECC
Confidence 234577888888888888888778999999999998866532 23678899864
No 100
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.8e-22 Score=249.36 Aligned_cols=206 Identities=11% Similarity=0.023 Sum_probs=154.6
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCce----eeeccCCCCeeEEEeeecCC------CcEEEE-ecCCcEEEeccCCCCC-
Q 000177 1519 GDSSHIAVGSHTKELKIFDSNSSSPL----ESCTSHQAPVTLVQSHLSGE------TQLLLS-SSSQDVHLWNASSIAG- 1586 (1922)
Q Consensus 1519 PDG~lLASGS~DGtIkIWDl~tgk~l----~tL~gHss~VtsLq~afSpD------G~lLaS-SsDgtVkLWDl~t~~g- 1586 (1922)
|+++.|++|+.|++|+|||+.+++.. .++.+|.+.|++| +|+|+ +.+|++ +.|++|+|||+.....
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v--~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~ 248 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDL--KWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD 248 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEE--EECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEE--EECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc
Confidence 44445556778899999999887653 3567788999999 77875 578888 5699999999976211
Q ss_pred --------CcceEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeeccccccccCCCCcceE--E-
Q 000177 1587 --------GPMHSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVNLTGRGHAYSQ--I- 1650 (1922)
Q Consensus 1587 --------k~l~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~~~~~gh~~~v--V- 1650 (1922)
.+..++.+| ++++|+++ ..|++| +.||+|++||++++.. ...+. +|...+ +
T Consensus 249 ~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasg---s~DgtV~lWD~~~~~~~~~~~~---------~H~~~V~sv~ 315 (524)
T 2j04_B 249 VHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCG---FKNGFVAEFDLTDPEVPSFYDQ---------VHDSYILSVS 315 (524)
T ss_dssp SSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEE---ETTSEEEEEETTBCSSCSEEEE---------CSSSCEEEEE
T ss_pred cccceeecCceEEEEcCCCCEEEEEecCC-CeEEEE---eCCCEEEEEECCCCCCceEEee---------cccccEEEEE
Confidence 123456543 78999986 478998 8899999999998743 33343 455444 5
Q ss_pred -EEcCCC-CeEeecc-----EEEEcCCCcceeeeccCCC--ce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1651 -HFSPSD-TMLLWNG-----ILWDRRNSVPVHRFDQFTD--HG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1651 -aFSPdG-~lLaSgg-----rLWDlrtgk~I~kf~gh~~--~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
.|+|++ ++|++++ +|||+++++++.++.+|.. .+ +++|+|+++.+++++ ++||++++.++.++.+
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g 395 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS 395 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence 578888 8899888 9999999988888877754 35 899999999999887 6999999998888988
Q ss_pred CCc--eeEEEccCCCEEEEEEccCch
Q 000177 1716 LDQ--TTITFNARGDVIYAILRRNLE 1739 (1922)
Q Consensus 1716 H~~--~sVaFSPdG~~LaSgs~~d~~ 1739 (1922)
|.. ++|+|||+|++|++++.+...
T Consensus 396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv 421 (524)
T 2j04_B 396 RETTITAIGVSRLHPMVLAGSADGSL 421 (524)
T ss_dssp CSSCEEEEECCSSCCBCEEEETTTEE
T ss_pred CCCceEEEEeCCCCCeEEEEECCCEE
Confidence 876 899999999999999655433
No 101
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.87 E-value=8.9e-21 Score=229.58 Aligned_cols=219 Identities=18% Similarity=0.333 Sum_probs=177.5
Q ss_pred EecCCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC----------CCceeeeccCCCCeeEEEeeecCCCc-EEEE
Q 000177 1503 TCRDDAGALLTCITFLGD-SSHIAVGSHTKELKIFDSNS----------SSPLESCTSHQAPVTLVQSHLSGETQ-LLLS 1570 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~t----------gk~l~tL~gHss~VtsLq~afSpDG~-lLaS 1570 (1922)
.+.+|. +.|++++|+|+ +.+|++|+.||.|+|||+.+ .+.+.++.+|...|++| .|+|++. +|++
T Consensus 123 ~~~~h~-~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l--~~~~~~~~~l~s 199 (430)
T 2xyi_A 123 IKINHE-GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGL--SWNPNLNGYLLS 199 (430)
T ss_dssp EEEEES-SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCE--EECTTSTTEEEE
T ss_pred EEEcCC-CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEE--EeCCCCCCeEEE
Confidence 345788 99999999997 78999999999999999976 57788899999999999 8899988 8888
Q ss_pred e-cCCcEEEeccCCCCC-----CcceEeccc----eeEEEcC-CCCEEEEeecCCCCCeEEEEECCCC---ceeeeeccc
Q 000177 1571 S-SSQDVHLWNASSIAG-----GPMHSFEGC----KAARFSN-SGNLFAALPTETSDRGILLYDIQTY---QLEAKLSDT 1636 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~g-----k~l~tf~gh----~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTg---k~i~tL~d~ 1636 (1922)
+ .|++|++||+..... .+...+.+| ++++|+| ++.+|+++ +.|+.|++||++++ +.+..+.
T Consensus 200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~---~~dg~i~i~d~~~~~~~~~~~~~~-- 274 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV---ADDQKLMIWDTRNNNTSKPSHTVD-- 274 (430)
T ss_dssp ECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE---ETTSEEEEEETTCSCSSSCSEEEE--
T ss_pred EeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE---eCCCeEEEEECCCCCCCcceeEee--
Confidence 5 599999999986211 013444443 7899999 67888888 88999999999987 3444443
Q ss_pred cccccCCCCcceEEEEcCCCC-eEeecc-----EEEEcCC-CcceeeeccCCCce-EEEEecCCC-EEEEEe-----EEE
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDT-MLLWNG-----ILWDRRN-SVPVHRFDQFTDHG-GGGFHPAGN-EVIINS-----EVW 1702 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~-lLaSgg-----rLWDlrt-gk~I~kf~gh~~~V-sVaFSPdG~-~LASGS-----eIW 1702 (1922)
.+......++|+|+++ ++++++ ++||+++ ++++..+..|...+ ++.|+|++. +|++++ .||
T Consensus 275 -----~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iw 349 (430)
T 2xyi_A 275 -----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349 (430)
T ss_dssp -----CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEE
T ss_pred -----cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEE
Confidence 1334456699999998 566665 9999998 56899999999888 999999995 577777 599
Q ss_pred ecCC--------------CeEEEEEcCCCc--eeEEEccCCC-EEEEEE
Q 000177 1703 DLRK--------------FRLLRSVPSLDQ--TTITFNARGD-VIYAIL 1734 (1922)
Q Consensus 1703 DLrT--------------gklL~tl~gH~~--~sVaFSPdG~-~LaSgs 1734 (1922)
|+.+ .+++..+.+|.. ++++|+|++. +|+++.
T Consensus 350 d~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 350 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp EGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred eCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 9987 367788888875 8999999999 777774
No 102
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.9e-20 Score=246.30 Aligned_cols=126 Identities=9% Similarity=0.094 Sum_probs=103.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-----------eeeccCCCCeeEEEeeecC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-----------ESCTSHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-----------~tL~gHss~VtsLq~afSp 1563 (1922)
....+.+.++. |. +.|++++|+|++++|++|+.||+|++||+.++++. ..+.+|.++|++| +|+|
T Consensus 86 ~~~~~~~~~~~-~~-~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl--~~sp 161 (902)
T 2oaj_A 86 LYSQKVLTTVF-VP-GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSI--QWNP 161 (902)
T ss_dssp TTTCSEEEEEE-CS-SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEE--EEET
T ss_pred CCCCcEEEEEc-CC-CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEE--EEcc
Confidence 34455666675 66 78999999999999999999999999999988753 3457899999999 8899
Q ss_pred C-CcEEEE-ecCCcEEEeccCCCCCCcceEecc----------------------ceeEEEcCCCCEEEEeecCCCCCeE
Q 000177 1564 E-TQLLLS-SSSQDVHLWNASSIAGGPMHSFEG----------------------CKAARFSNSGNLFAALPTETSDRGI 1619 (1922)
Q Consensus 1564 D-G~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g----------------------h~sVaFSPDG~~LaSgS~~S~DgtI 1619 (1922)
+ +.+|++ +.|++| |||+++ ++++..+.. +++++|+|+|++|+++ +.|++|
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg---s~Dg~i 235 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVE--NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI---HEDNSL 235 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTT--TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE---ETTCCE
T ss_pred CCCCEEEEEeCCCcE-EEECCC--CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE---ECCCeE
Confidence 6 356666 469999 999987 666666542 4789999999999999 889999
Q ss_pred EEEECCCCcee
Q 000177 1620 LLYDIQTYQLE 1630 (1922)
Q Consensus 1620 rIWDlrTgk~i 1630 (1922)
++||+++++++
T Consensus 236 ~lWd~~~g~~~ 246 (902)
T 2oaj_A 236 VFWDANSGHMI 246 (902)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcEE
Confidence 99999877654
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.86 E-value=2.3e-20 Score=225.39 Aligned_cols=216 Identities=17% Similarity=0.316 Sum_probs=181.0
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS- 1570 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS- 1570 (1922)
.|.....+.+.++.+|. +.|++++| ++++|++|+.||+|++||+.+++.+.++.+|...|.++ .|++ .++++
T Consensus 157 iwd~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l--~~~~--~~l~s~ 229 (435)
T 1p22_A 157 IWDKNTLECKRILTGHT-GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL--RFNN--GMMVTC 229 (435)
T ss_dssp EEESSSCCEEEEECCCS-SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEE--ECCT--TEEEEE
T ss_pred EEeCCCCeEEEEEcCCC-CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEE--EEcC--CEEEEe
Confidence 34456778889999999 99999999 78999999999999999999999999999999999999 6653 46666
Q ss_pred ecCCcEEEeccCCCCCCcc---eEeccc----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1571 SSSQDVHLWNASSIAGGPM---HSFEGC----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l---~tf~gh----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+.|++|++||+.+ +..+ ..+.+| .++.| ++++++++ +.|++|++||+++++.+.++.
T Consensus 230 s~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~---~~dg~i~vwd~~~~~~~~~~~--------- 293 (435)
T 1p22_A 230 SKDRSIAVWDMAS--PTDITLRRVLVGHRAAVNVVDF--DDKYIVSA---SGDRTIKVWNTSTCEFVRTLN--------- 293 (435)
T ss_dssp ETTSCEEEEECSS--SSCCEEEEEECCCSSCEEEEEE--ETTEEEEE---ETTSEEEEEETTTCCEEEEEE---------
T ss_pred eCCCcEEEEeCCC--CCCceeeeEecCCCCcEEEEEe--CCCEEEEE---eCCCeEEEEECCcCcEEEEEc---------
Confidence 5699999999987 4444 445554 56777 78999999 889999999999999988886
Q ss_pred CCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe----
Q 000177 1644 GHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR---- 1708 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk---- 1708 (1922)
+|...+.++..+++++++++ ++||+++++++..+.+|...+ ++.| ++.+|++|+ ++||+++++
T Consensus 294 ~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~ 371 (435)
T 1p22_A 294 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRA 371 (435)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTS
T ss_pred CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccc
Confidence 55555544444678888877 999999999999999999888 7888 789999998 599998766
Q ss_pred -----EEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1709 -----LLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1709 -----lL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
++.++.+|.. ++++| ++.+|++++
T Consensus 372 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 372 PAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp CTTTTEEEEECCCSSCCCCEEE--CSSCEEECC
T ss_pred cccchheeeccCCCCCeEEEEe--CCCEEEEEe
Confidence 8899998877 78888 778888874
No 104
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.86 E-value=3.9e-20 Score=219.02 Aligned_cols=281 Identities=11% Similarity=0.070 Sum_probs=186.8
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE-E-ecCCc
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL-S-SSSQD 1575 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa-S-SsDgt 1575 (1922)
.+++.++.+|. +.|+|++|+|||++|++|+.++ ++|||+.+++....... ..+..+ .+.+++++++ + +.|++
T Consensus 9 ~~~~~~~~~h~-~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 9 RNPIVPENHVS-NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKV--RMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp ----------C-CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEE--EECTTSSEEEEECSSTTE
T ss_pred cCCccccccCC-CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEE--EEcCCCCEEEEEECCccE
Confidence 44566678899 9999999999999999999876 78999987766554432 357777 5566777664 3 45899
Q ss_pred EEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC-ceeeeeccccccccCCCCcceEEE
Q 000177 1576 VHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTY-QLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg-k~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
|+|||+.+ ++++..+.. +.++.|+++. ++++ .|+.|++||+.++ +.+.++. . ....++
T Consensus 83 v~iWd~~~--~~~~~~~~~~~~v~~v~~~~~~--~~~~----~~~~i~i~d~~~~~~~~~~~~---------~-~~~~~~ 144 (355)
T 3vu4_A 83 VHIWDDVK--KQDVSRIKVDAPVKDLFLSREF--IVVS----YGDVISVFKFGNPWKRITDDI---------R-FGGVCE 144 (355)
T ss_dssp EEEEETTT--TEEEEEEECSSCEEEEEECSSE--EEEE----ETTEEEEEESSTTCCBSSCCE---------E-EEEEEE
T ss_pred EEEEECCC--CcEEEEEECCCceEEEEEcCCE--EEEE----EcCEEEEEECCCCceeeEEec---------c-CCceEE
Confidence 99999988 777776653 4778888764 4443 3678999999988 7766664 1 344577
Q ss_pred EcCCCCeEeec--c-----EEEEcCCCc---------------c-eeeeccCCCce-EEEEecCCCEEEEEe------EE
Q 000177 1652 FSPSDTMLLWN--G-----ILWDRRNSV---------------P-VHRFDQFTDHG-GGGFHPAGNEVIINS------EV 1701 (1922)
Q Consensus 1652 FSPdG~lLaSg--g-----rLWDlrtgk---------------~-I~kf~gh~~~V-sVaFSPdG~~LASGS------eI 1701 (1922)
+++ .+++.. + ++||+++++ + +..+.+|...+ +++|+|+|++|++++ +|
T Consensus 145 ~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~i 222 (355)
T 3vu4_A 145 FSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRV 222 (355)
T ss_dssp EET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEE
T ss_pred EEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEE
Confidence 888 556543 3 999999875 2 78899999999 999999999999998 59
Q ss_pred EecCCCeEEEEEc-C-CCc--eeEEEccCCCEEEEEEccCchhhhhhhcccc-cccCCcceEEE-EecCCCceeeeecc-
Q 000177 1702 WDLRKFRLLRSVP-S-LDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRR-VKHPLFAAFRT-VDAINYSDIATIPV- 1774 (1922)
Q Consensus 1702 WDLrTgklL~tl~-g-H~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr-~ksp~~ssFrt-~Da~dys~IaTidv- 1774 (1922)
||+++++++.++. + |.. ++++|+|+|++|++++.+....+|....... ..+.+...+.. +-...+ .+..+..
T Consensus 223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 301 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW-SLCNFKLS 301 (355)
T ss_dssp EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS-CSEEEECC
T ss_pred EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc-ceeEEEec
Confidence 9999999999998 5 665 8999999999999997554433332110000 00001000000 000001 0111111
Q ss_pred ---CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1775 ---DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1775 ---kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
......++|+++|.++++.. .++.+++|++.
T Consensus 302 ~~~~~~~~~~a~~~d~~~l~~~~------~dg~~~~~~~~ 335 (355)
T 3vu4_A 302 VDKHVRGCKIAWISESSLVVVWP------HTRMIETFKVV 335 (355)
T ss_dssp CCTTCCCCEEEESSSSEEEEEET------TTTEEEEEEEE
T ss_pred cCCCCCceEEEEeCCCCEEEEEe------CCCeEEEEEEE
Confidence 22346689999999988763 24678888763
No 105
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.86 E-value=1.4e-19 Score=211.48 Aligned_cols=240 Identities=16% Similarity=0.169 Sum_probs=177.2
Q ss_pred CCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecC---CCcEEEE-ecCCcEEEec
Q 000177 1506 DDAGALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSG---ETQLLLS-SSSQDVHLWN 1580 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSp---DG~lLaS-SsDgtVkLWD 1580 (1922)
+|. ..|++++|+| ++.+|++|+.||.|++||+.+++....+. |...+.++ .|++ ++.++++ +.|+.|++||
T Consensus 97 ~~~-~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~d 172 (408)
T 4a11_B 97 VHR-YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSH--HMSPVSTKHCLVAVGTRGPKVQLCD 172 (408)
T ss_dssp CCS-SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE--EECSSCSSCCEEEEEESSSSEEEEE
T ss_pred cCC-CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeee--EeecCCCCCcEEEEEcCCCeEEEEe
Confidence 588 9999999999 78899999999999999999998887776 77889999 5565 4557877 4699999999
Q ss_pred cCCCCCCcceEeccc----eeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCc-eeeeeccc------cccc--cCCCCc
Q 000177 1581 ASSIAGGPMHSFEGC----KAARFSNSGN-LFAALPTETSDRGILLYDIQTYQ-LEAKLSDT------SVNL--TGRGHA 1646 (1922)
Q Consensus 1581 l~t~~gk~l~tf~gh----~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk-~i~tL~d~------s~~~--~~~gh~ 1646 (1922)
+.+ ++++..+.+| .+++|+|+++ .|+++ +.|+.|++||++++. ++..+... .... ..+...
T Consensus 173 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
T 4a11_B 173 LKS--GSCSHILQGHRQEILAVSWSPRYDYILATA---SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK 247 (408)
T ss_dssp SSS--SCCCEEECCCCSCEEEEEECSSCTTEEEEE---ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSC
T ss_pred CCC--cceeeeecCCCCcEEEEEECCCCCcEEEEE---cCCCcEEEEECCCCCcccccccccccccceeeccccccccCc
Confidence 998 7778888764 7899999998 47888 889999999999876 34433210 0011 122334
Q ss_pred ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC-----ce--EEEEecCCCEEEEEe----EEEecCCCeEE
Q 000177 1647 YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD-----HG--GGGFHPAGNEVIINS----EVWDLRKFRLL 1710 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~-----~V--sVaFSPdG~~LASGS----eIWDLrTgklL 1710 (1922)
+..++|+|++++|++++ ++||+++++.+..+..+.. .. ...+.+.+.+++++. .+||+.+++++
T Consensus 248 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 327 (408)
T 4a11_B 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI 327 (408)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE
T ss_pred eeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce
Confidence 45599999999999877 9999999887665544321 12 233334445555544 59999999999
Q ss_pred EEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec
Q 000177 1711 RSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP 1773 (1922)
Q Consensus 1711 ~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid 1773 (1922)
.++.+|.. ++++|+|+|.+|+++.. +..+++|+..+++.+...+
T Consensus 328 ~~~~~~~~~v~~~~~s~~~~~l~s~~~-------------------dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 328 TMLKGHYKTVDCCVFQSNFQELYSGSR-------------------DCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp EEECCCSSCEEEEEEETTTTEEEEEET-------------------TSCEEEEEECC--------
T ss_pred eeeccCCCeEEEEEEcCCCCEEEEECC-------------------CCeEEEEeCCCCCccCCCC
Confidence 99999876 89999999999999853 2346777777766665443
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.4e-21 Score=252.32 Aligned_cols=225 Identities=15% Similarity=0.236 Sum_probs=177.1
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCceeeeccCCCCeeEEEeeecCC--CcEEEEe-cCCc
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN--SSSPLESCTSHQAPVTLVQSHLSGE--TQLLLSS-SSQD 1575 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~--tgk~l~tL~gHss~VtsLq~afSpD--G~lLaSS-sDgt 1575 (1922)
+.++.+|. +.|++++|+|+|++|++|+.||+|+|||+. +++.+.++.+|..+|+++ .|+++ +++|+++ .||+
T Consensus 2 ~~~l~gH~-~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l--~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 2 VVIANAHN-ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRV--DWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp ------CC-CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEE--EECCTTSCSEEEEEETTSC
T ss_pred eeecccCc-ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEE--EecCCCCCCEEEEEeCCCe
Confidence 35678999 999999999999999999999999999997 556778889999999999 77777 8899885 5999
Q ss_pred EEEeccCCCCCC--cceEeccc----eeEEEcCC--CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1576 VHLWNASSIAGG--PMHSFEGC----KAARFSNS--GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1576 VkLWDl~t~~gk--~l~tf~gh----~sVaFSPD--G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
|++||+.+ ++ .+..+.+| ++++|+|+ +++++++ +.|++|++||++++....... ...+...+
T Consensus 79 I~vwd~~~--~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sg---s~dg~I~vwdl~~~~~~~~~~-----~~~~~~~v 148 (753)
T 3jro_A 79 VLIWKEEN--GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA---SSDGKVSVVEFKENGTTSPII-----IDAHAIGV 148 (753)
T ss_dssp EEEEEEET--TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEE---ETTSEEEEEECCSSSCCCCEE-----EECCSSCE
T ss_pred EEEEECCC--CcccccccccCCCCCeEEEEECCCCCCCEEEEE---eCCCcEEEEEeecCCCcceeE-----eecCCCce
Confidence 99999987 44 45555544 88999999 9999999 889999999999874433221 01123345
Q ss_pred eEEEEcC-------------CCCeEeecc-----EEEEcCCC----cceeeeccCCCce-EEEEecC---CCEEEEEe--
Q 000177 1648 SQIHFSP-------------SDTMLLWNG-----ILWDRRNS----VPVHRFDQFTDHG-GGGFHPA---GNEVIINS-- 1699 (1922)
Q Consensus 1648 ~vVaFSP-------------dG~lLaSgg-----rLWDlrtg----k~I~kf~gh~~~V-sVaFSPd---G~~LASGS-- 1699 (1922)
..++|+| ++.++++++ ++||++++ .++..+.+|...+ +++|+|+ |.+|++++
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~D 228 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQD 228 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESS
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecC
Confidence 5599999 588888877 99999987 4567788899988 9999999 89999998
Q ss_pred ---EEEecCCCe-----EEEEEcCCCc--eeEEEccCCCEEEEEEccCc
Q 000177 1700 ---EVWDLRKFR-----LLRSVPSLDQ--TTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1700 ---eIWDLrTgk-----lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
++||++++. .+.....|.. ++++|+|+|.+|+++..+..
T Consensus 229 g~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 229 RTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp SCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred CEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 599999864 2222223443 79999999999999865443
No 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.86 E-value=5.1e-20 Score=211.39 Aligned_cols=222 Identities=10% Similarity=0.116 Sum_probs=178.5
Q ss_pred eeEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEEC-CCCCceeeecc--CCCCeeEEEeeecCCCcEEEE-ecCC
Q 000177 1500 PWRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDS-NSSSPLESCTS--HQAPVTLVQSHLSGETQLLLS-SSSQ 1574 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl-~tgk~l~tL~g--Hss~VtsLq~afSpDG~lLaS-SsDg 1574 (1922)
+...+.+|. ..|++++|+|+++ +|++|+.||.|++||+ .+++. ..+.+ |...|+++ .|+| +.+|++ +.|+
T Consensus 48 ~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l--~~~~-~~~l~s~~~d~ 122 (342)
T 1yfq_A 48 DLLQSLRYK-HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRI--CKYG-DDKLIAASWDG 122 (342)
T ss_dssp EEEEEEECS-SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEE--EEET-TTEEEEEETTS
T ss_pred cceeeeecC-CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEE--EeCC-CCEEEEEcCCC
Confidence 355566898 9999999999999 9999999999999999 77654 77888 99999999 7888 888887 5699
Q ss_pred cEEEeccCCCC-------CCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCC
Q 000177 1575 DVHLWNASSIA-------GGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1575 tVkLWDl~t~~-------gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~ 1643 (1922)
.|++||+++.. ++++.++. .+.+++|+|++ ++++ +.|+.|++||+++ +....... ...+
T Consensus 123 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~---~~d~~i~i~d~~~~~~~~~~~~-----~~~~ 192 (342)
T 1yfq_A 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVG---MNNSQVQWFRLPLCEDDNGTIE-----ESGL 192 (342)
T ss_dssp EEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEE---ESTTEEEEEESSCCTTCCCEEE-----ECSC
T ss_pred eEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEE---eCCCeEEEEECCccccccceee-----ecCC
Confidence 99999987400 22333333 24889999987 7777 7889999999998 55422111 0112
Q ss_pred CCcceEEEEcC-CCCeEeecc-----EEEEcCCC------cceeeeccCCC---------ce-EEEEecCCCEEEEEe--
Q 000177 1644 GHAYSQIHFSP-SDTMLLWNG-----ILWDRRNS------VPVHRFDQFTD---------HG-GGGFHPAGNEVIINS-- 1699 (1922)
Q Consensus 1644 gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtg------k~I~kf~gh~~---------~V-sVaFSPdG~~LASGS-- 1699 (1922)
......++|+| +++++++++ ++||+... +++..+..|.. .+ +++|+|++++|++++
T Consensus 193 ~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 272 (342)
T 1yfq_A 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD 272 (342)
T ss_dssp SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence 34556699999 999999877 89999987 78888988865 67 999999999999998
Q ss_pred ---EEEecCCCeEEEEEcCC-Cc--eeEEEccCCCEEEEEEccCc
Q 000177 1700 ---EVWDLRKFRLLRSVPSL-DQ--TTITFNARGDVIYAILRRNL 1738 (1922)
Q Consensus 1700 ---eIWDLrTgklL~tl~gH-~~--~sVaFSPdG~~LaSgs~~d~ 1738 (1922)
.+||+.+++++.++.+| .. ++++ |+|.+|++++.++.
T Consensus 273 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 273 GIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 59999999999999988 66 5666 99999999976553
No 108
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.86 E-value=3.3e-20 Score=209.87 Aligned_cols=201 Identities=13% Similarity=0.180 Sum_probs=164.2
Q ss_pred eeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---------CceeeeccCCCCeeEEEeeecCC--C
Q 000177 1499 RPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSS---------SPLESCTSHQAPVTLVQSHLSGE--T 1565 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tg---------k~l~tL~gHss~VtsLq~afSpD--G 1565 (1922)
+...++.+|. ..|++++|+| ++++|++|+.||+|+|||+.++ +.+..+.+|...|+++ .|+|+ +
T Consensus 48 ~~~~~~~~~~-~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~ 124 (351)
T 3f3f_A 48 ELSDSWRAHD-SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSV--KFAPAHLG 124 (351)
T ss_dssp EEEEEEECCS-SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEE--EECCGGGC
T ss_pred eecceeccCC-CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEE--EEcCCCCC
Confidence 5677888999 9999999999 6999999999999999999887 4477889999999999 88998 9
Q ss_pred cEEEE-ecCCcEEEeccCCCCCCcceEec-----------------cceeEEEcCC---CCEEEEeecCCCCCeEEEEEC
Q 000177 1566 QLLLS-SSSQDVHLWNASSIAGGPMHSFE-----------------GCKAARFSNS---GNLFAALPTETSDRGILLYDI 1624 (1922)
Q Consensus 1566 ~lLaS-SsDgtVkLWDl~t~~gk~l~tf~-----------------gh~sVaFSPD---G~~LaSgS~~S~DgtIrIWDl 1624 (1922)
.+|++ +.|++|++||+.+ ++.+..+. .+.++.|+|+ +.+++++ +.|+.+.+|+.
T Consensus 125 ~~l~~~~~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~~~~~~~~ 199 (351)
T 3f3f_A 125 LKLACLGNDGILRLYDALE--PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS---ALEQAIIYQRG 199 (351)
T ss_dssp SEEEEEETTCEEEEEECSS--TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE---ETTEEEEEEEC
T ss_pred cEEEEecCCCcEEEecCCC--hHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe---cCCCcEEEEcc
Confidence 98888 5699999999987 54443322 2378999997 8999998 78899988888
Q ss_pred CCCce--eeeeccccccccCCCCcceEEEEcCCC----CeEeecc-----EEEEcCCC----------------------
Q 000177 1625 QTYQL--EAKLSDTSVNLTGRGHAYSQIHFSPSD----TMLLWNG-----ILWDRRNS---------------------- 1671 (1922)
Q Consensus 1625 rTgk~--i~tL~d~s~~~~~~gh~~~vVaFSPdG----~lLaSgg-----rLWDlrtg---------------------- 1671 (1922)
..++. +..+. .+...+..++|+|++ ++|++++ ++||++++
T Consensus 200 ~~~~~~~~~~~~-------~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (351)
T 3f3f_A 200 KDGKLHVAAKLP-------GHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV 272 (351)
T ss_dssp TTSCEEEEEECC-------CCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred CCCceeeeeecC-------CCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc
Confidence 87765 33332 123344559999998 7888877 99999875
Q ss_pred ------------------------cceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1672 ------------------------VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1672 ------------------------k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
+++..+.+|...+ +++|+|+|++|++++ +|||+.+++.+..+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp ------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred ccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 5677888898888 999999999999999 599999876555443
No 109
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.86 E-value=9.4e-21 Score=220.17 Aligned_cols=190 Identities=15% Similarity=0.219 Sum_probs=151.7
Q ss_pred eeeEEecCCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCC--CcEEEEe-
Q 000177 1499 RPWRTCRDDAGALLTCITFLG--DSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGE--TQLLLSS- 1571 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP--DG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpD--G~lLaSS- 1571 (1922)
..+.+|++|. +.|++++|++ ++++|++|+.|++|+|||+.+++ ...++.+|...|+++ +|+|+ +.+|+++
T Consensus 48 ~~~~~l~gH~-~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v--~~~p~~~g~~lasgs 124 (316)
T 3bg1_A 48 ILIADLRGHE-GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSV--CWAPHDYGLILACGS 124 (316)
T ss_dssp EEEEEEECCS-SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEE--EECCTTTCSCEEEEC
T ss_pred EEEEEEcCCC-ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEE--EECCCCCCcEEEEEc
Confidence 4567899999 9999999986 48999999999999999998874 566788999999999 78887 7888885
Q ss_pred cCCcEEEeccCCCCCCc---ceEecc----ceeEEEcCC-----------------CCEEEEeecCCCCCeEEEEECCCC
Q 000177 1572 SSQDVHLWNASSIAGGP---MHSFEG----CKAARFSNS-----------------GNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~---l~tf~g----h~sVaFSPD-----------------G~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
.|++|++||+.. ... ...+.+ +.++.|+|+ +++|+++ +.|++|++||++++
T Consensus 125 ~D~~i~lwd~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg---s~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 125 SDGAISLLTYTG--EGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG---GCDNLIKLWKEEED 199 (316)
T ss_dssp SSSCEEEEEECS--SSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC---BTTSBCCEEEECTT
T ss_pred CCCCEEEEecCC--CCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe---cCCCeEEEEEeCCC
Confidence 599999999986 321 233334 378899997 4688998 88999999999765
Q ss_pred c---eeeeeccccccccCCCCcc--eEEEEcCCC----CeEeecc-----EEEEcCCC---c-ceeeeccCCCce-EEEE
Q 000177 1628 Q---LEAKLSDTSVNLTGRGHAY--SQIHFSPSD----TMLLWNG-----ILWDRRNS---V-PVHRFDQFTDHG-GGGF 1688 (1922)
Q Consensus 1628 k---~i~tL~d~s~~~~~~gh~~--~vVaFSPdG----~lLaSgg-----rLWDlrtg---k-~I~kf~gh~~~V-sVaF 1688 (1922)
. ++.++. +|.. ..++|+|++ ++|++++ ++||+.+. . ....+..|...+ +++|
T Consensus 200 ~~~~~~~~l~---------~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~ 270 (316)
T 3bg1_A 200 GQWKEEQKLE---------AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSW 270 (316)
T ss_dssp SCEEEEECCB---------CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEE
T ss_pred Cccceeeecc---------cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEE
Confidence 2 344443 5554 459999987 7888877 99999863 1 234456777788 9999
Q ss_pred ecCCCEEEEEe-----EEEecC
Q 000177 1689 HPAGNEVIINS-----EVWDLR 1705 (1922)
Q Consensus 1689 SPdG~~LASGS-----eIWDLr 1705 (1922)
+|+|++|++++ +||+..
T Consensus 271 sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 271 SITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CTTTCCEEEEESSSCEEEEEEC
T ss_pred cCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999998 599976
No 110
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.4e-20 Score=225.54 Aligned_cols=213 Identities=13% Similarity=0.144 Sum_probs=167.2
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCCceeeecc------------CCCCeeEEEeeecCCCcEEEE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN---SSSPLESCTS------------HQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~---tgk~l~tL~g------------Hss~VtsLq~afSpDG~lLaS 1570 (1922)
+|. +.|++++|+|++++|++|+.||+|+|||+. +++....+.+ |...+.++.+.+++++.+|++
T Consensus 109 ~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 109 DCS-STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp ECS-SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred cCC-CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 488 999999999999999999999999999994 5555443322 566777776668889999998
Q ss_pred e-cCCcEEEeccCCCCCCcceEecc--c----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1571 S-SSQDVHLWNASSIAGGPMHSFEG--C----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~~gk~l~tf~g--h----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+ .|++|++||+++ ++++.++.+ | ++++|+|++++|+++ +.|++|++||+++++++.++. .
T Consensus 188 ~~~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~--------~ 254 (437)
T 3gre_A 188 LTNLSRVIIFDIRT--LERLQIIENSPRHGAVSSICIDEECCVLILG---TTRGIIDIWDIRFNVLIRSWS--------F 254 (437)
T ss_dssp EETTSEEEEEETTT--CCEEEEEECCGGGCCEEEEEECTTSCEEEEE---ETTSCEEEEETTTTEEEEEEB--------C
T ss_pred EeCCCeEEEEeCCC--CeeeEEEccCCCCCceEEEEECCCCCEEEEE---cCCCeEEEEEcCCccEEEEEe--------c
Confidence 5 599999999998 788888865 3 789999999999999 889999999999999988774 1
Q ss_pred CCc--ceEEEEc----CCCCeEeecc-----EEEEcCCCcceeeeccCC--------------------------Cce-E
Q 000177 1644 GHA--YSQIHFS----PSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--------------------------DHG-G 1685 (1922)
Q Consensus 1644 gh~--~~vVaFS----PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--------------------------~~V-s 1685 (1922)
+|. +..++|+ |++.+|++++ ++||+++++++..+.+|. ..+ +
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 233 3447554 5678999887 999999999888776542 334 7
Q ss_pred EEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-----eeEEEccCCCEEEEE
Q 000177 1686 GGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ-----TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1686 VaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~-----~sVaFSPdG~~LaSg 1733 (1922)
++|+ ++++|++++ ++||+.+++.+..+.+|.. ....++++..+++..
T Consensus 335 l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (437)
T 3gre_A 335 ISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRK 391 (437)
T ss_dssp EEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred EEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEe
Confidence 8898 778999998 5999999998888887643 344455554444433
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.6e-20 Score=219.73 Aligned_cols=205 Identities=12% Similarity=0.047 Sum_probs=162.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCC-------CCCc
Q 000177 1516 TFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSI-------AGGP 1588 (1922)
Q Consensus 1516 aFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~-------~gk~ 1588 (1922)
.+.+++.+|++|+.||+|++||+.+++.+.++. ...|.++ .|+|+ ++.++.|++|++|+.... .++.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~--~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTG--GEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTT--CCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceee--eeCCc--eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 345688899999999999999999999888886 5678888 77887 444466999999976520 1333
Q ss_pred ceEec-----cceeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEee
Q 000177 1589 MHSFE-----GCKAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1589 l~tf~-----gh~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaS 1661 (1922)
+..+. .+.+++|+| ++++|+++ +.|++|++||+++++++..+. ..+......++|+|+|.+|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---s~dg~i~~wd~~~~~~~~~~~------~~~~~~i~~~~~~pdg~~las 187 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWA---DNRGTIGFQSYEDDSQYIVHS------AKSDVEYSSGVLHKDSLLLAL 187 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEE---ETTCCEEEEESSSSCEEEEEC------CCSSCCCCEEEECTTSCEEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEE---eCCCcEEEEECCCCcEEEEEe------cCCCCceEEEEECCCCCEEEE
Confidence 44443 258899999 99999999 889999999999999866553 112234667999999999998
Q ss_pred cc-----EEEEcCCCcce-eeecc-CCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcC---CCc----eeEE
Q 000177 1662 NG-----ILWDRRNSVPV-HRFDQ-FTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPS---LDQ----TTIT 1722 (1922)
Q Consensus 1662 gg-----rLWDlrtgk~I-~kf~g-h~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~g---H~~----~sVa 1722 (1922)
++ ++||+++++.+ .+|.. |...+ +++|+|+|.+|++++ ++||+++++.+.++.. |.. .+++
T Consensus 188 g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 188 YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 76 99999999987 88988 88888 999999999999998 5999999877655543 222 3699
Q ss_pred EccCCCEEEEEEc
Q 000177 1723 FNARGDVIYAILR 1735 (1922)
Q Consensus 1723 FSPdG~~LaSgs~ 1735 (1922)
|+|+|++|+++..
T Consensus 268 ~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 268 IDDSGKNMIAYSN 280 (343)
T ss_dssp ECTTSSEEEEEET
T ss_pred ECCCCCEEEEecC
Confidence 9999999999864
No 112
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=5.7e-20 Score=212.67 Aligned_cols=218 Identities=14% Similarity=0.186 Sum_probs=167.4
Q ss_pred cCCccccccceeeecCceeeEEecCCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEE
Q 000177 1482 SGVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGD--SSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLV 1557 (1922)
Q Consensus 1482 Gg~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD--G~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsL 1557 (1922)
++.++....|.+.....+.++++.+|. +.|++++|+++ +++|++|+.||.|+|||+.+++ .+..+.+|...|+++
T Consensus 29 ~~~dg~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 107 (379)
T 3jrp_A 29 CSSDKTIKIFEVEGETHKLIDTLTGHE-GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 107 (379)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCS-SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred EECCCcEEEEecCCCcceeeeEecCCC-CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEE
Confidence 334444455554333677888999999 99999999987 9999999999999999999887 677888999999999
Q ss_pred EeeecCC--CcEEEE-ecCCcEEEeccCCCCCCcceEecc----ceeEEEcC-------------CCCEEEEeecCCCCC
Q 000177 1558 QSHLSGE--TQLLLS-SSSQDVHLWNASSIAGGPMHSFEG----CKAARFSN-------------SGNLFAALPTETSDR 1617 (1922)
Q Consensus 1558 q~afSpD--G~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSP-------------DG~~LaSgS~~S~Dg 1617 (1922)
.|+|+ +.+|++ +.|++|++||+..........+.+ +.+++|+| ++++|+++ +.|+
T Consensus 108 --~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg 182 (379)
T 3jrp_A 108 --QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG---GADN 182 (379)
T ss_dssp --EECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE---ETTS
T ss_pred --EeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE---eCCC
Confidence 88998 888888 469999999998732233344444 48899999 69999999 8899
Q ss_pred eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC---CCeEeecc-----EEEEcCCCc-----ceeeeccCCCce
Q 000177 1618 GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS---DTMLLWNG-----ILWDRRNSV-----PVHRFDQFTDHG 1684 (1922)
Q Consensus 1618 tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd---G~lLaSgg-----rLWDlrtgk-----~I~kf~gh~~~V 1684 (1922)
.|++||++++.....+. .....+...+..++|+|+ +++|++++ ++||++++. .+.....|...+
T Consensus 183 ~i~i~d~~~~~~~~~~~---~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v 259 (379)
T 3jrp_A 183 LVKIWKYNSDAQTYVLE---STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL 259 (379)
T ss_dssp CEEEEEEETTTTEEEEE---EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE
T ss_pred eEEEEEecCCCcceeeE---EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcE
Confidence 99999998876432221 000112334455999999 89999877 999999874 222233466677
Q ss_pred -EEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1685 -GGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1685 -sVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
+++|+|+|++|++++ .+|++.+..
T Consensus 260 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 260 WRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 999999999999988 599998543
No 113
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.85 E-value=2.9e-20 Score=221.41 Aligned_cols=192 Identities=10% Similarity=0.070 Sum_probs=150.0
Q ss_pred CCCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVG--SHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASS 1583 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASG--S~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t 1583 (1922)
.+. ..+.+++|||||++|+++ +.|++|+|||+.+++++..+. |...|++| +|+|||++|++++++.+++|+..+
T Consensus 131 ~~~-~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v--~fspdg~~l~s~s~~~~~~~~~~~ 206 (365)
T 4h5i_A 131 NAD-DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDL--HFSTDGKVVAYITGSSLEVISTVT 206 (365)
T ss_dssp CTT-CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEE--EECTTSSEEEEECSSCEEEEETTT
T ss_pred Ccc-cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEE--EEccCCceEEeccceeEEEEEecc
Confidence 344 679999999999987654 478999999999999988886 77889999 899999999998888888888776
Q ss_pred CCCCcceE--ecc----ceeEEEcCCCCEEEEeecCCC-CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1584 IAGGPMHS--FEG----CKAARFSNSGNLFAALPTETS-DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1584 ~~gk~l~t--f~g----h~sVaFSPDG~~LaSgS~~S~-DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+..+.. ..+ +++++|+|+++++++++.++. ..++++||+..+....... .....+...+..++|+|+|
T Consensus 207 --~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 207 --GSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRS---KQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp --CCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEE---EEEESSCSCEEEEEECTTS
T ss_pred --CcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceee---eeecCCCCCeEeEEECCCC
Confidence 554432 222 378999999999999843221 1268899988765422111 0001122334559999999
Q ss_pred CeEeecc-----EEEEcCCCcceeee-ccCCCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRF-DQFTDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf-~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
++|++++ +|||++++++++++ .+|...| +++|+|||++|+++| +|||+..
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999887 99999999999886 6899999 999999999999999 6999964
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.8e-19 Score=239.91 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=159.1
Q ss_pred cCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCC
Q 000177 1505 RDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASS 1583 (1922)
Q Consensus 1505 rgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t 1583 (1922)
.+|. +.|++++|+|++++||+|+.||+|+||+..+.+....+ .|..+|++| .|+| +++|++ +.|++|+|||+.+
T Consensus 14 ~gh~-~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l--~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 14 YGMS-SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEM--RFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EECS-SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEE--EEET-TTEEEEEETTCEEEEEETTT
T ss_pred cCCC-CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEE--EEcC-CCEEEEEECcCeEEEEECCC
Confidence 4798 99999999999999999999999999999877665554 488899999 8899 787777 5699999999998
Q ss_pred CCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc-----ccccCCCCcceEEEEcCC
Q 000177 1584 IAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS-----VNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1584 ~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s-----~~~~~~gh~~~vVaFSPd 1655 (1922)
++++.++.. +++++|+|++++|++| +.|++|++||++++++. .+..+. ....++...+..++|+|+
T Consensus 89 --~~~~~~~~~~~~V~~v~~sp~g~~l~sg---s~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 89 --QKVLTTVFVPGKITSIDTDASLDWMLIG---LQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp --CSEEEEEECSSCEEEEECCTTCSEEEEE---ETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred --CcEEEEEcCCCCEEEEEECCCCCEEEEE---cCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEccC
Confidence 777777643 4899999999999999 88999999999988763 221000 011123334556999997
Q ss_pred C-CeEeecc----EEEEcCCCcceeeeccC------------------CCce-EEEEecCCCEEEEEe-----EEEecCC
Q 000177 1656 D-TMLLWNG----ILWDRRNSVPVHRFDQF------------------TDHG-GGGFHPAGNEVIINS-----EVWDLRK 1706 (1922)
Q Consensus 1656 G-~lLaSgg----rLWDlrtgk~I~kf~gh------------------~~~V-sVaFSPdG~~LASGS-----eIWDLrT 1706 (1922)
+ .++++++ .+||++++++++.|..| ...+ +++|+|+|.+|++++ ++||+++
T Consensus 163 ~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 163 DIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred CCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 5 5677665 89999999998888766 3556 999999999999999 5999999
Q ss_pred CeEEEE
Q 000177 1707 FRLLRS 1712 (1922)
Q Consensus 1707 gklL~t 1712 (1922)
++++..
T Consensus 243 g~~~~~ 248 (902)
T 2oaj_A 243 GHMIMA 248 (902)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 988764
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=6.1e-20 Score=222.96 Aligned_cols=213 Identities=14% Similarity=0.120 Sum_probs=173.4
Q ss_pred EecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECC--CCCceeeec--cCCCCeeEEEeeecCCCcEEEEe-cCCcE
Q 000177 1503 TCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSN--SSSPLESCT--SHQAPVTLVQSHLSGETQLLLSS-SSQDV 1576 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~--tgk~l~tL~--gHss~VtsLq~afSpDG~lLaSS-sDgtV 1576 (1922)
...+|. +.|++++|+|+|++| ++|+.||+|+|||+. +++.+..+. .|...|+++ .|+|++++|+++ .|+.|
T Consensus 97 ~~~~~~-~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~--~~sp~~~~l~~~~~~g~v 173 (450)
T 2vdu_B 97 GAPPIY-SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAI--SIAEDDTTVIIADKFGDV 173 (450)
T ss_dssp ---CCC-CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEE--EECTTSSEEEEEETTSEE
T ss_pred CCCccC-CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEE--EEcCCCCEEEEEeCCCcE
Confidence 345788 899999999999996 999999999999999 888888886 677899999 899999999985 59999
Q ss_pred EEeccCCCCCCcc----eEecc----ceeEEEcCC---CCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC
Q 000177 1577 HLWNASSIAGGPM----HSFEG----CKAARFSNS---GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1577 kLWDl~t~~gk~l----~tf~g----h~sVaFSPD---G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh 1645 (1922)
++|++.+ +... ..+.+ +++++|+|+ +++|+++ +.|++|++||+++++++..+. .+|
T Consensus 174 ~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~---~~d~~i~vwd~~~~~~~~~~~--------~~h 240 (450)
T 2vdu_B 174 YSIDINS--IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS---DRDEHIKISHYPQCFIVDKWL--------FGH 240 (450)
T ss_dssp EEEETTS--CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEE---ETTSCEEEEEESCTTCEEEEC--------CCC
T ss_pred EEEecCC--cccccccceeeecccCceEEEEEcCCCCCCcEEEEE---cCCCcEEEEECCCCceeeeee--------cCC
Confidence 9999987 3332 24444 488999999 9999999 789999999999998877743 244
Q ss_pred c--ceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccC-------------------------CCce-EEEEecCC
Q 000177 1646 A--YSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF-------------------------TDHG-GGGFHPAG 1692 (1922)
Q Consensus 1646 ~--~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh-------------------------~~~V-sVaFSPdG 1692 (1922)
. +..++|+ ++++|++++ ++||+++++++..+..+ ...+ ++.|+|++
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 4 4559999 999999887 99999999988887632 2344 89999999
Q ss_pred CEEEEEe------EEEec--CCC---eEEEEEcCCCc-eeEEEccCCCEEEEE
Q 000177 1693 NEVIINS------EVWDL--RKF---RLLRSVPSLDQ-TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1693 ~~LASGS------eIWDL--rTg---klL~tl~gH~~-~sVaFSPdG~~LaSg 1733 (1922)
++|++++ .||++ .++ +.+.++..+.. ++++|+|++ ++++.
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~-~~v~~ 371 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDE-FQVTL 371 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTE-EEEEE
T ss_pred CEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCc-EEEEE
Confidence 9999887 49999 555 77888887744 899999954 44444
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.84 E-value=5.3e-19 Score=210.86 Aligned_cols=219 Identities=9% Similarity=0.089 Sum_probs=180.8
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE-Ee-cCCcEEEec
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL-SS-SSQDVHLWN 1580 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa-SS-sDgtVkLWD 1580 (1922)
.+.+|. +.|++++|+++++++++++.|+.|++||+.+++.+.++..|...+.++ +|+|++++++ ++ .|+.|++||
T Consensus 164 ~~~~~~-~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~i~~~d 240 (433)
T 3bws_A 164 KYKKKL-GFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKIL--LYDPIRDLVYCSNWISEDISVID 240 (433)
T ss_dssp HHHTTC-CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEE--EEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccC-CceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEE--EEcCCCCEEEEEecCCCcEEEEE
Confidence 456898 899999999999999999999999999999999999999999999999 8899998775 45 489999999
Q ss_pred cCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCC-----CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1581 ASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTET-----SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S-----~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
+.+ ++.+..+.. ..+++|+|+++++++++.+. .|+.|++||+.+++.+..+. +......++|
T Consensus 241 ~~~--~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--------~~~~~~~~~~ 310 (433)
T 3bws_A 241 RKT--KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--------PPGNKRHIVS 310 (433)
T ss_dssp TTT--TEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--------EEECEEEEEE
T ss_pred CCC--CcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--------CCCCcceEEE
Confidence 987 666666654 37899999999998884322 58899999999998877664 1223345999
Q ss_pred cCCCCeEe-ecc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--------------------EEEecCC
Q 000177 1653 SPSDTMLL-WNG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--------------------EVWDLRK 1706 (1922)
Q Consensus 1653 SPdG~lLa-Sgg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--------------------eIWDLrT 1706 (1922)
+|+++.++ +++ ++||+.+++.+..+.......+++|+|+|++|++++ .+||+.+
T Consensus 311 ~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 311 GNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp CSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred CCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 99997654 433 899999999888886443334999999999887754 3899999
Q ss_pred CeEEEEEcCCCc-eeEEEccCCCEEEEEE
Q 000177 1707 FRLLRSVPSLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1707 gklL~tl~gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
++.+..+..+.. ..++|+|+|++|+++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 391 DTVKEFWEAGNQPTGLDVSPDNRYLVISD 419 (433)
T ss_dssp TEEEEEEECSSSEEEEEECTTSCEEEEEE
T ss_pred CcEEEEecCCCCCceEEEcCCCCEEEEEE
Confidence 999999887554 8999999999999874
No 117
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.83 E-value=5.8e-19 Score=213.75 Aligned_cols=240 Identities=16% Similarity=0.245 Sum_probs=172.2
Q ss_pred eeeccCCCCeeEEEeeecCC-CcEEEEe-cCCcEEEeccCC--------CCCCcceEeccc----eeEEEcCCCC-EEEE
Q 000177 1545 ESCTSHQAPVTLVQSHLSGE-TQLLLSS-SSQDVHLWNASS--------IAGGPMHSFEGC----KAARFSNSGN-LFAA 1609 (1922)
Q Consensus 1545 ~tL~gHss~VtsLq~afSpD-G~lLaSS-sDgtVkLWDl~t--------~~gk~l~tf~gh----~sVaFSPDG~-~LaS 1609 (1922)
.....|.+.|+++ .|+|+ +.+|+++ .|+.|++||+.. ....++.++.+| .+++|+|++. +|++
T Consensus 122 ~~~~~h~~~v~~l--~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHEGEVNRA--RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEESSCCSEE--EEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEcCCCcEEEE--EECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 3457899999999 88997 6788885 599999999975 113556677665 7899999988 9999
Q ss_pred eecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC-CCCeEeecc-----EEEEcCCC---cceeeeccC
Q 000177 1610 LPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWNG-----ILWDRRNS---VPVHRFDQF 1680 (1922)
Q Consensus 1610 gS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSgg-----rLWDlrtg---k~I~kf~gh 1680 (1922)
+ +.||+|++||+.++........+......+...+..++|+| ++.+|++++ ++||++++ +++..+..|
T Consensus 200 ~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 200 A---SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp E---CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred E---eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 8 88999999999984321111000011112233455599999 567777765 99999987 678888889
Q ss_pred CCce-EEEEecCCC-EEEEEe-----EEEecCC-CeEEEEEcCCCc--eeEEEccCCC-EEEEEEccCchhhhhhhcccc
Q 000177 1681 TDHG-GGGFHPAGN-EVIINS-----EVWDLRK-FRLLRSVPSLDQ--TTITFNARGD-VIYAILRRNLEDVMSAVHTRR 1749 (1922)
Q Consensus 1681 ~~~V-sVaFSPdG~-~LASGS-----eIWDLrT-gklL~tl~gH~~--~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr 1749 (1922)
...+ +++|+|++. ++++|+ ++||+++ ..++.++.+|.. ++++|+|++. +|+++..++
T Consensus 277 ~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~------------ 344 (430)
T 2xyi_A 277 TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR------------ 344 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS------------
T ss_pred CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCC------------
Confidence 8888 999999997 577887 5999998 567888888866 8999999996 566664333
Q ss_pred cccCCcceEEEEecCC--------------Cceeeeecc-CCceEEEEEcCCCc-eEEEEecCCCCCccceEEEEEecCC
Q 000177 1750 VKHPLFAAFRTVDAIN--------------YSDIATIPV-DRCVLDFATERTDS-FVGLITMDDQEDMFSSARIYEIGRR 1813 (1922)
Q Consensus 1750 ~ksp~~ssFrt~Da~d--------------ys~IaTidv-kr~I~dLa~SPdds-~LAVVe~dds~d~dSsVRLyEVGr~ 1813 (1922)
.+++|+... ...+..... ...|.+++|+|++. .++... .++.+++|++...
T Consensus 345 -------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s------~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 345 -------RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS------EDNIMQVWQMAEN 411 (430)
T ss_dssp -------CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE------TTSEEEEEEECHH
T ss_pred -------cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE------CCCCEEEeEcccc
Confidence 233333322 123333333 44699999999999 555442 3478999998654
Q ss_pred C
Q 000177 1814 R 1814 (1922)
Q Consensus 1814 r 1814 (1922)
.
T Consensus 412 ~ 412 (430)
T 2xyi_A 412 V 412 (430)
T ss_dssp H
T ss_pred c
Confidence 3
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.83 E-value=2e-20 Score=224.49 Aligned_cols=222 Identities=11% Similarity=0.105 Sum_probs=145.8
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-----eeeccCCCCeeEEEeeecC--------CCcEEEE-e
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-----ESCTSHQAPVTLVQSHLSG--------ETQLLLS-S 1571 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-----~tL~gHss~VtsLq~afSp--------DG~lLaS-S 1571 (1922)
.|. ..+....+++++.+|++|+.|++|+|||+.++... ..+.+|.+.|++| +|+| |+++|++ |
T Consensus 87 ~~~-~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v--~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 87 LHD-GDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDI--DIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp -----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEE--EEEEEECTTCSEEEEEEEEEE
T ss_pred ccC-CCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEE--EEccccccccCCCCCEEEEEE
Confidence 354 55666677778899999999999999999887643 3568999999999 6776 8899999 4
Q ss_pred cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCceeeeecccc---------
Q 000177 1572 SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTS--------- 1637 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s--------- 1637 (1922)
.|++|+|||+.+ +.++..+.+ +.+++|+|++. +|+++ +.|++|++||+++++.........
T Consensus 164 ~D~tv~~Wd~~~--~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~---~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 164 DDCTLIIWRLTD--EGPILAGYPLSSPGISVQFRPSNPNQLIVG---ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp TTSEEEEEEEET--TEEEEEEEECSSCEEEEEEETTEEEEEEEE---ETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred CCCeEEEEECCC--CceeeeecCCCCCcEEEEECCCCCceEEec---CCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 699999999987 555555544 37899999874 78888 889999999999887654332100
Q ss_pred ---------ccccCCCCcceEEEEc-CCCCeEeecc-----EEEEcCCCcceeeeccCCCce------------------
Q 000177 1638 ---------VNLTGRGHAYSQIHFS-PSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG------------------ 1684 (1922)
Q Consensus 1638 ---------~~~~~~gh~~~vVaFS-PdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V------------------ 1684 (1922)
....++......+.|+ |+++.|++++ ++||+.+++....+..+...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL 318 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence 0011122233346665 8999999877 899999887666554443222
Q ss_pred -EEEEec--CCCEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1685 -GGGFHP--AGNEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1685 -sVaFSP--dG~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
.+.|+| ++.++++|+ +|||+.+++.+..+.+|.. ++|+|||+|++|+++..
T Consensus 319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES
T ss_pred eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 334554 344666666 5999999988887777765 89999999999999853
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.9e-19 Score=224.90 Aligned_cols=246 Identities=9% Similarity=0.036 Sum_probs=183.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
..|.+++|||||+++||++.|++|+ |...++ .+.+|...|+++ +|+|+| .++++.+|+.+. ..+
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V--~FsPdg------~~~~~~~~~~~~---~~~ 79 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHV--KEFPLE------FENKLDFELAQQ---NGL 79 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEE--EEECCC------CCCTTTTSCCCS---SCS
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEE--EECCCC------CcceEEEEeCCC---ceE
Confidence 7799999999999999999999999 755554 447999999999 899998 566666666542 222
Q ss_pred eE---eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc---
Q 000177 1590 HS---FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--- 1663 (1922)
Q Consensus 1590 ~t---f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--- 1663 (1922)
.+ -..+.+++|+|+|++|+++ +.||.|++||..+ ++..+. ..... ....+..++|||+|++|++++
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~---s~dg~V~iwd~~~--~l~~l~-~~~~~--~~~sv~svafSPDG~~LAsgs~DG 151 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVL---SNNGNVSVFKDNK--MLTNLD-SKGNL--SSRTYHCFEWNPIESSIVVGNEDG 151 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEE---ETTSCEEEEETTE--EEEECC-CSSCS--TTTCEEEEEECSSSSCEEEEETTS
T ss_pred eecCCCCcEEEEEECCCCCEEEEE---eCCCcEEEEeCCc--eeeecc-CCCcc--ccccEEEEEEcCCCCEEEEEcCCC
Confidence 22 1236899999999999999 8899999999654 444442 11000 012356799999999999988
Q ss_pred --EEEEcCCCcc-------eeee----ccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe---EEEEEc-CCCc--
Q 000177 1664 --ILWDRRNSVP-------VHRF----DQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR---LLRSVP-SLDQ-- 1718 (1922)
Q Consensus 1664 --rLWDlrtgk~-------I~kf----~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk---lL~tl~-gH~~-- 1718 (1922)
++||+.+++. +.++ .+|..+| +++|+|+| +++++ ++||+.+++ ..+++. +|..
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 8999998863 6776 5677788 99999999 55555 699998877 346674 6653
Q ss_pred eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce-eeeeccCCceEEEEE--cCCCceEEEEec
Q 000177 1719 TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD-IATIPVDRCVLDFAT--ERTDSFVGLITM 1795 (1922)
Q Consensus 1719 ~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~-IaTidvkr~I~dLa~--SPdds~LAVVe~ 1795 (1922)
.+++|+ |.+|++++ ...++.|+..+... .........|+++++ +|++..+++..
T Consensus 230 ~svaFs--g~~LASa~--------------------~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~- 286 (588)
T 2j04_A 230 TDLKIV--DYKVVLTC--------------------PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN- 286 (588)
T ss_dssp CCEEEE--TTEEEEEC--------------------SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS-
T ss_pred EEEEEE--CCEEEEEe--------------------CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc-
Confidence 899999 68998883 24577888776666 344355667999999 99998877642
Q ss_pred CCCCCccceEEEEEe
Q 000177 1796 DDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1796 dds~d~dSsVRLyEV 1810 (1922)
.++. ++|..
T Consensus 287 -----edG~-klw~~ 295 (588)
T 2j04_A 287 -----KTSY-KVLLE 295 (588)
T ss_dssp -----SCEE-EEEES
T ss_pred -----CCCC-EEEee
Confidence 2245 77764
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.6e-19 Score=227.34 Aligned_cols=235 Identities=6% Similarity=0.037 Sum_probs=174.8
Q ss_pred Eec-CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCC-----CeeEEEeeecCCCcEEEEe-cCCc
Q 000177 1503 TCR-DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQA-----PVTLVQSHLSGETQLLLSS-SSQD 1575 (1922)
Q Consensus 1503 tLr-gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss-----~VtsLq~afSpDG~lLaSS-sDgt 1575 (1922)
.+. .|. ..|++|+|||||++||+++.||+|+|||... ++..+. |.. .|.++ +|||||++|+++ .||+
T Consensus 79 ~~~~~~~-~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sv--afSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 79 LLNSQPV-CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCF--EWNPIESSIVVGNEDGE 152 (588)
T ss_dssp SSTTSCS-CCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEE--EECSSSSCEEEEETTSE
T ss_pred EeecCCC-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEE--EEcCCCCEEEEEcCCCE
Confidence 344 576 8999999999999999999999999999644 666677 766 49999 899999999995 5999
Q ss_pred EEEeccCCCCCCc-------ceEe----cc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee---eeecccc
Q 000177 1576 VHLWNASSIAGGP-------MHSF----EG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE---AKLSDTS 1637 (1922)
Q Consensus 1576 VkLWDl~t~~gk~-------l~tf----~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i---~tL~d~s 1637 (1922)
|+|||+.. +.. +.++ .+ +.+++|+|+| ++++ +.|++|++||+.++... .++.
T Consensus 153 VkIWd~~~--~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas---s~D~tVrlWd~~~~~~~~~~~tL~--- 222 (588)
T 2j04_A 153 LQFFSIRK--NSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA---LSNNSVFSMTVSASSHQPVSRMIQ--- 222 (588)
T ss_dssp EEEEECCC--CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE---ETTCCEEEECCCSSSSCCCEEEEE---
T ss_pred EEEEECCC--CccccccceeeeeeecccccccccEEEEEEcCCc--EEEE---eCCCeEEEEECCCCccccceeeec---
Confidence 99999987 432 4565 33 4889999999 6666 67999999999987742 3442
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeeccCCCce-EEEE--ecCCCEEEEEe----EEEecCC
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGF--HPAGNEVIINS----EVWDLRK 1706 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaF--SPdG~~LASGS----eIWDLrT 1706 (1922)
.++...+..++|+ |+.+++++ ++||+.+++......+|...+ .+.| +|++..|++++ ++|...
T Consensus 223 ---~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~klw~~d- 296 (588)
T 2j04_A 223 ---NASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSYKVLLED- 296 (588)
T ss_dssp ---CCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEEEEEESS-
T ss_pred ---ccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCCEEEeec-
Confidence 0122345559999 68888776 999999887733333788888 9999 99999999988 488876
Q ss_pred CeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCC
Q 000177 1707 FRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1707 gklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPd 1786 (1922)
.++|+|++..+++. +.....| .. .+..+..++....|+.++++|+
T Consensus 297 -------------~~~~spd~~l~a~~--d~~v~lW-~~-------------------~g~~l~~~~~~~~I~~va~SPd 341 (588)
T 2j04_A 297 -------------ELHVTADNIIAPYL--EKKFKKW-ST-------------------IWNEFNNYETTLVIHGISLSPD 341 (588)
T ss_dssp -------------SEEEECCCSSHHHH--HHHHHHT-TT-------------------TTTSSSSSCCEEEEEEEEECTT
T ss_pred -------------cEEECCCceEEEEc--CCEEEEE-EC-------------------CCCceeeeccceEEEEEEECCC
Confidence 36799999877764 1111111 11 1111222333345899999999
Q ss_pred CceEEEEe
Q 000177 1787 DSFVGLIT 1794 (1922)
Q Consensus 1787 ds~LAVVe 1794 (1922)
|..+|+..
T Consensus 342 G~~lA~~~ 349 (588)
T 2j04_A 342 GYSIAIVY 349 (588)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 99988764
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.5e-19 Score=207.45 Aligned_cols=221 Identities=8% Similarity=0.076 Sum_probs=163.8
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCCceeee-ccCCCCeeEEEeeecC
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN---------SSSPLESC-TSHQAPVTLVQSHLSG 1563 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~---------tgk~l~tL-~gHss~VtsLq~afSp 1563 (1922)
.....+.+.++. . ..|+++.|+|+ +++|+.|++|++|+.. +++.+..+ .+|...|.++ .|+|
T Consensus 64 d~~~~~~~~~~~--~-~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 135 (343)
T 3lrv_A 64 QLKDSKTITTIT--T-PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYM--YGHN 135 (343)
T ss_dssp EESSSSCEEEEE--E-ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEE--ECCC
T ss_pred ECCCCcEEEEEe--c-CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEE--EcCC
Confidence 345556666665 3 56888999988 9999999999999665 55545555 4788999999 8899
Q ss_pred --CCcEEEEe-cCCcEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee-eeec
Q 000177 1564 --ETQLLLSS-SSQDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE-AKLS 1634 (1922)
Q Consensus 1564 --DG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i-~tL~ 1634 (1922)
++++++++ .|++|++||+++ ++++..+.. +++++|+|++.+|++| +.|+.|++||+++++.+ .++.
T Consensus 136 ~~~~~~l~s~s~dg~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~~pdg~~lasg---~~dg~i~iwd~~~~~~~~~~~~ 210 (343)
T 3lrv_A 136 EVNTEYFIWADNRGTIGFQSYED--DSQYIVHSAKSDVEYSSGVLHKDSLLLALY---SPDGILDVYNLSSPDQASSRFP 210 (343)
T ss_dssp ---CCEEEEEETTCCEEEEESSS--SCEEEEECCCSSCCCCEEEECTTSCEEEEE---CTTSCEEEEESSCTTSCCEECC
T ss_pred CCCCCEEEEEeCCCcEEEEECCC--CcEEEEEecCCCCceEEEEECCCCCEEEEE---cCCCEEEEEECCCCCCCccEEe
Confidence 99999984 699999999997 666554432 4789999999999999 89999999999999887 6665
Q ss_pred cccccccCCCCcceEEEEcCCCCeEeecc----EEEEcCCCcceeeecc---CCCce---EEEEecCCCEEEEEe-----
Q 000177 1635 DTSVNLTGRGHAYSQIHFSPSDTMLLWNG----ILWDRRNSVPVHRFDQ---FTDHG---GGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1635 d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----rLWDlrtgk~I~kf~g---h~~~V---sVaFSPdG~~LASGS----- 1699 (1922)
..+...+..++|+|+|.+|++++ ++||++++++++.+.. +...+ +++|+|+|++|++++
T Consensus 211 ------~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~ 284 (343)
T 3lrv_A 211 ------VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS 284 (343)
T ss_dssp ------CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTE
T ss_pred ------ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCc
Confidence 01233445599999999999877 9999999988776654 33333 499999999999955
Q ss_pred -EEEecCCCeEEEEEcCCCceeEEEcc---CCCEEEEEEc
Q 000177 1700 -EVWDLRKFRLLRSVPSLDQTTITFNA---RGDVIYAILR 1735 (1922)
Q Consensus 1700 -eIWDLrTgklL~tl~gH~~~sVaFSP---dG~~LaSgs~ 1735 (1922)
+||++.+....... .....+.|+| ++..++++..
T Consensus 285 i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~ 322 (343)
T 3lrv_A 285 LTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCG 322 (343)
T ss_dssp EEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEE
T ss_pred EEEEEEcccccceEe--cCceeEecCccccccceeEEEec
Confidence 59998654322211 1225677887 7777777753
No 122
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.80 E-value=2e-17 Score=208.80 Aligned_cols=289 Identities=10% Similarity=0.068 Sum_probs=215.6
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCCceeeeccCCCCeeEEEeeecC----CCc
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDS--NSSSPLESCTSHQAPVTLVQSHLSG----ETQ 1566 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl--~tgk~l~tL~gHss~VtsLq~afSp----DG~ 1566 (1922)
|....++.+.++..+. . +.+++|+|||++|++++.|++|++||+ .+++++.++.. ...+..+ +|+| ||+
T Consensus 164 ~D~~t~~~~~~i~~g~-~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~v--a~sp~~~~dg~ 238 (543)
T 1nir_A 164 VDGDSKKIVKVIDTGY-A-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSV--ESSKFKGYEDR 238 (543)
T ss_dssp EETTTCCEEEEEECST-T-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEE--EECCSTTCTTT
T ss_pred EECCCceEEEEEecCc-c-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceE--EeCCCcCCCCC
Confidence 4456677888888544 3 899999999999999999999999999 88888888874 4567888 8999 999
Q ss_pred EEEEec--CCcEEEeccCCCCCCcceEecc---------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1567 LLLSSS--SQDVHLWNASSIAGGPMHSFEG---------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1567 lLaSSs--DgtVkLWDl~t~~gk~l~tf~g---------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
+|+++. +++|.|||..+ ++++.++.. ...+.|+|++..++... ..+++|.+||+.+.+.
T Consensus 239 ~l~v~~~~~~~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~--~~~g~i~vvd~~~~~~ 314 (543)
T 1nir_A 239 YTIAGAYWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDIDN 314 (543)
T ss_dssp EEEEEEEESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEECTTSSS
T ss_pred EEEEEEccCCeEEEEeccc--cccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE--CCCCeEEEEEecCCCc
Confidence 988853 89999999987 777776642 25689999877655542 6789999999998765
Q ss_pred ee--eeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeecc----CCCceEEEEecC-CCEEE
Q 000177 1630 EA--KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQ----FTDHGGGGFHPA-GNEVI 1696 (1922)
Q Consensus 1630 i~--tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~g----h~~~VsVaFSPd-G~~LA 1696 (1922)
+. ++. .+.....+.|+|+|+++++++ .+||+.+++++..+.. |.......++|+ |..++
T Consensus 315 l~~~~i~--------~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~ 386 (543)
T 1nir_A 315 LTVTSIG--------AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 386 (543)
T ss_dssp CEEEEEE--------CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEE
T ss_pred ceeEEec--------cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEE
Confidence 54 332 122233489999999876443 8999999999888875 333332336887 66667
Q ss_pred EEe------EEEecCC-------CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEE
Q 000177 1697 INS------EVWDLRK-------FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTV 1761 (1922)
Q Consensus 1697 SGS------eIWDLrT-------gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~ 1761 (1922)
+++ .|||+.+ +++++++++|.. ..|+|||+|++|++...-+.+. ....++.+|
T Consensus 387 s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~------------~~~~~v~v~ 454 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA------------RISQSVAVF 454 (543)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH------------HHHTCEEEE
T ss_pred eccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc------------ccCceEEEE
Confidence 764 4999998 899999998865 6899999999999984211000 023568899
Q ss_pred ecCCCcee-eeec---------cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1762 DAINYSDI-ATIP---------VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1762 Da~dys~I-aTid---------vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
|..+++.+ ..+. ....+..++++|+|..+.+...... +.++.+.+|+..
T Consensus 455 d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~-~~~~~i~v~D~~ 513 (543)
T 1nir_A 455 DLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK-NDSSALVVVDDK 513 (543)
T ss_dssp ETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCT-TSCCEEEEEETT
T ss_pred ECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCC-CCCCeEEEEECC
Confidence 98888766 4432 2567999999999999987643221 234778888753
No 123
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.80 E-value=5.8e-17 Score=186.82 Aligned_cols=255 Identities=13% Similarity=0.082 Sum_probs=200.5
Q ss_pred CCEEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEec
Q 000177 1510 ALLTCITFLGDSSHIAVGSH-------TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWN 1580 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~-------DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWD 1580 (1922)
..+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..+ .|++++++++. +. ++.|.+||
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~--~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGA--TINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSE--EEETTTTEEEEEETTTTEEEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceE--EECCCCCEEEEEecCCCEEEEEe
Confidence 56889999999999988884 568999999999988887643 346777 78999985544 44 78999999
Q ss_pred cCCCCCCcceEecc-------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1581 ASSIAGGPMHSFEG-------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g-------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
..+ ++.+..+.. ..++.|+|++++++++.. +.++.|.+||+.+++.+..+. ..+...
T Consensus 118 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~d~~~~~~~~~~~-------~~~~~~ 187 (353)
T 3vgz_A 118 AKT--GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQ-------NTGKMS 187 (353)
T ss_dssp TTT--CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEEETTTTEEEEEEC-------CCCTTC
T ss_pred CCC--CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEEcCCCCceEEEec-------CCCCcc
Confidence 987 666666543 366899999998877622 357899999999999887774 112333
Q ss_pred eEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc----CCCce-EEEEecCCCEEEEEe------EEEecCCCeEEE
Q 000177 1648 SQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ----FTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLR 1711 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g----h~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~ 1711 (1922)
..++|+|+|+++++.+ .+||+.+++.+..+.. +...+ +++|+|+|+++++++ .+||+.+++.+.
T Consensus 188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 267 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA 267 (353)
T ss_dssp CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 4589999999877655 8999999998887764 33334 799999999887765 399999999999
Q ss_pred EEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEE
Q 000177 1712 SVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVG 1791 (1922)
Q Consensus 1712 tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LA 1791 (1922)
.+.......++|+|+|++++++... ...+.+||..+.+.+..+.....+..++|+|+++++.
T Consensus 268 ~~~~~~~~~~~~s~dg~~l~v~~~~------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 329 (353)
T 3vgz_A 268 KVAAPESLAVLFNPARNEAYVTHRQ------------------AGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLY 329 (353)
T ss_dssp EEECSSCCCEEEETTTTEEEEEETT------------------TTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEE
T ss_pred EEEcCCCceEEECCCCCEEEEEECC------------------CCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEE
Confidence 8886656789999999988877421 2356788888888888888888899999999999888
Q ss_pred EEec
Q 000177 1792 LITM 1795 (1922)
Q Consensus 1792 VVe~ 1795 (1922)
+...
T Consensus 330 v~~~ 333 (353)
T 3vgz_A 330 VSVK 333 (353)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 7753
No 124
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.7e-18 Score=225.61 Aligned_cols=212 Identities=14% Similarity=0.199 Sum_probs=167.4
Q ss_pred CCccccccceeeecCceeeEEecCCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEE
Q 000177 1483 GVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGD--SSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQ 1558 (1922)
Q Consensus 1483 g~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPD--G~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq 1558 (1922)
+.++....|.+.....+.+.++.+|. +.|++++|+|+ +++|++|+.||+|++||+.+++ .+..+.+|...|+++
T Consensus 28 ~~dg~I~vwd~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v- 105 (753)
T 3jro_A 28 SSDKTIKIFEVEGETHKLIDTLTGHE-GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV- 105 (753)
T ss_dssp ETTTEEEEEEEETTEEEEEEEECCCS-SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE-
T ss_pred ECCCcEEEEecCCCCCccceeccCCc-CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEE-
Confidence 33444444444333667788999999 99999999988 9999999999999999999887 677889999999999
Q ss_pred eeecCC--CcEEEEe-cCCcEEEeccCCCCCCcceEecc----ceeEEEcC-------------CCCEEEEeecCCCCCe
Q 000177 1559 SHLSGE--TQLLLSS-SSQDVHLWNASSIAGGPMHSFEG----CKAARFSN-------------SGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1559 ~afSpD--G~lLaSS-sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSP-------------DG~~LaSgS~~S~Dgt 1618 (1922)
.|+|+ +++++++ .|++|++||+..........+.+ +.++.|+| ++++|++| +.|++
T Consensus 106 -~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg---s~dg~ 181 (753)
T 3jro_A 106 -QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG---GADNL 181 (753)
T ss_dssp -EECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE---ETTSC
T ss_pred -EECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE---ECCCe
Confidence 88998 8888885 59999999998732233444444 38899999 58999999 88999
Q ss_pred EEEEECCCCce----eeeeccccccccCCCCcceEEEEcCC---CCeEeecc-----EEEEcCCCc-----ceeeeccCC
Q 000177 1619 ILLYDIQTYQL----EAKLSDTSVNLTGRGHAYSQIHFSPS---DTMLLWNG-----ILWDRRNSV-----PVHRFDQFT 1681 (1922)
Q Consensus 1619 IrIWDlrTgk~----i~tL~d~s~~~~~~gh~~~vVaFSPd---G~lLaSgg-----rLWDlrtgk-----~I~kf~gh~ 1681 (1922)
|++||++++.. ..++. .+...+..++|+|+ ++++++++ ++||++++. .+.....|.
T Consensus 182 I~iwd~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 254 (753)
T 3jro_A 182 VKIWKYNSDAQTYVLESTLE-------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFP 254 (753)
T ss_dssp EEEEEEETTTTEEEEEEEEC-------CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCS
T ss_pred EEEEeccCCcccceeeeeec-------CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCC
Confidence 99999998743 33332 12334455999999 89999887 999999874 334445577
Q ss_pred Cce-EEEEecCCCEEEEEe-----EEEecCCC
Q 000177 1682 DHG-GGGFHPAGNEVIINS-----EVWDLRKF 1707 (1922)
Q Consensus 1682 ~~V-sVaFSPdG~~LASGS-----eIWDLrTg 1707 (1922)
..+ +++|+|+|++|++++ .+||+.++
T Consensus 255 ~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 255 DVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp SCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 777 999999999999998 59999854
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.79 E-value=7e-19 Score=211.11 Aligned_cols=198 Identities=13% Similarity=0.086 Sum_probs=141.6
Q ss_pred eeeEEecCCCCCCEEEEEEcC--------CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLG--------DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLL 1569 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSP--------DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLa 1569 (1922)
.++.++.+|. +.|++++|+| ||++|+|||.|++|+|||+.++.++..+.+|..+|.++ +|+|++. +|+
T Consensus 127 ~~~~~~~gH~-~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v--~~~p~~~~~l~ 203 (393)
T 4gq1_A 127 HVLGGKSGHH-NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISV--QFRPSNPNQLI 203 (393)
T ss_dssp EEECTTTSCS-SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEE--EEETTEEEEEE
T ss_pred eeecccCCCC-CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEE--EECCCCCceEE
Confidence 3455678999 9999999998 89999999999999999999998888888999999999 8899874 677
Q ss_pred E-ecCCcEEEeccCCCCCCcceEe-------------------------cc----ceeEEEc-CCCCEEEEeecCCCCCe
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSF-------------------------EG----CKAARFS-NSGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf-------------------------~g----h~sVaFS-PDG~~LaSgS~~S~Dgt 1618 (1922)
+ +.|++|++||+.+ ++....+ .+ +.++.|+ |+++.|+++ +.|++
T Consensus 204 ~~~~d~~v~~wd~~t--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~---s~d~~ 278 (393)
T 4gq1_A 204 VGERNGNIRIFDWTL--NLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM---CKSGA 278 (393)
T ss_dssp EEETTSEEEEEETTC--CC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE---CTTSE
T ss_pred ecCCCCEEEEEECCC--CcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE---eCCCC
Confidence 7 4699999999987 3322211 11 2567776 799999999 89999
Q ss_pred EEEEECCCCceeeeeccccccc------------cCCCCcceEEEEcC-CCC-eEeecc-----EEEEcCCCcceeeecc
Q 000177 1619 ILLYDIQTYQLEAKLSDTSVNL------------TGRGHAYSQIHFSP-SDT-MLLWNG-----ILWDRRNSVPVHRFDQ 1679 (1922)
Q Consensus 1619 IrIWDlrTgk~i~tL~d~s~~~------------~~~gh~~~vVaFSP-dG~-lLaSgg-----rLWDlrtgk~I~kf~g 1679 (1922)
+++||+.+++....+....... ........ ..|+| .+. ++++++ ++||+.+++++..+.+
T Consensus 279 i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~ 357 (393)
T 4gq1_A 279 WLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLG-ACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ 357 (393)
T ss_dssp EEEEEC-------------------CCSCSEEEECSSCCSSC-CEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred EEEEECccCCCCceEeeecCccccEEEccccccccccCccee-EEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence 9999999877665543111000 00011111 33444 344 445554 8999999999988888
Q ss_pred CCCce-EEEEecCCCEEEEEeE----EEecC
Q 000177 1680 FTDHG-GGGFHPAGNEVIINSE----VWDLR 1705 (1922)
Q Consensus 1680 h~~~V-sVaFSPdG~~LASGSe----IWDLr 1705 (1922)
|...| +++|||+|++||++++ +|.+.
T Consensus 358 ~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 358 LGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 98888 9999999999999983 56654
No 126
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.77 E-value=3e-17 Score=194.26 Aligned_cols=234 Identities=11% Similarity=0.103 Sum_probs=170.5
Q ss_pred EEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceE--eccceeEEEcCCCCEEEEeec
Q 000177 1535 IFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHS--FEGCKAARFSNSGNLFAALPT 1612 (1922)
Q Consensus 1535 IWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~t--f~gh~sVaFSPDG~~LaSgS~ 1612 (1922)
||++.+.+.+.++..|...|+++ +|+|||++|+++.+..++|||+.+ ...+.. +.++..+.|.++++.++..
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v--~fs~dg~~la~g~~~~~~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 76 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDY--EFNQDQSCLILSTLKSFEIYNVHP--VAHIMSQEMRHLSKVRMLHRTNYVAFV-- 76 (355)
T ss_dssp ----------------CCCCCEE--EECTTSSEEEEECSSEEEEEEETT--EEEEEEEECSCCCEEEECTTSSEEEEE--
T ss_pred cccccccCCccccccCCCceEEE--EECCCCCEEEEEcCCEEEEEecCC--cceeeeeecCCeEEEEEcCCCCEEEEE--
Confidence 67777888888889999999999 899999999998877899999986 443333 3356778999988887543
Q ss_pred CCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--EEEEcCCC-cceeeeccCCCce-EEEE
Q 000177 1613 ETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--ILWDRRNS-VPVHRFDQFTDHG-GGGF 1688 (1922)
Q Consensus 1613 ~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--rLWDlrtg-k~I~kf~gh~~~V-sVaF 1688 (1922)
++.|++|++||+.+++++..+. ....+..+.|+++.-.++..+ ++||+.++ +.++++.. .. .+++
T Consensus 77 ~~~d~~v~iWd~~~~~~~~~~~--------~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~ 145 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVSRIK--------VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEF 145 (355)
T ss_dssp CSSTTEEEEEETTTTEEEEEEE--------CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEE
T ss_pred ECCccEEEEEECCCCcEEEEEE--------CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEE
Confidence 1677899999999999988875 233455588988876665555 99999998 78887766 33 5677
Q ss_pred ecCCCEEEEE--e-----EEEecCCCe----------------EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhh
Q 000177 1689 HPAGNEVIIN--S-----EVWDLRKFR----------------LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMS 1743 (1922)
Q Consensus 1689 SPdG~~LASG--S-----eIWDLrTgk----------------lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s 1743 (1922)
+| .+++++ + ++||+++++ .+.++.+|.. ++++|+|+|++|++++.
T Consensus 146 s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-------- 215 (355)
T 3vu4_A 146 SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-------- 215 (355)
T ss_dssp ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--------
T ss_pred Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--------
Confidence 77 667765 3 599999865 2678888877 89999999999999952
Q ss_pred hhcccccccCCcce-EEEEecCCCceeeeec---cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1744 AVHTRRVKHPLFAA-FRTVDAINYSDIATIP---VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1744 ~lh~rr~ksp~~ss-Frt~Da~dys~IaTid---vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
+.. +++||..+...+.++. ....|..++|+|++.+++... .+..+++|++..
T Consensus 216 -----------d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s------~d~~v~iw~~~~ 271 (355)
T 3vu4_A 216 -----------DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS------DKWTLHVFEIFN 271 (355)
T ss_dssp -----------TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE------TTCEEEEEESSC
T ss_pred -----------CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE------CCCEEEEEEccC
Confidence 344 7888888888888887 466799999999999998764 347899999854
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.77 E-value=2.4e-18 Score=205.63 Aligned_cols=178 Identities=11% Similarity=0.119 Sum_probs=137.1
Q ss_pred CCCCEEEEEe--CCCcEEEEEC-CCCCceeeeccCCCCeeEEEeeecC---CCcEEEE-ecCCcEEEeccCCCCCCcceE
Q 000177 1519 GDSSHIAVGS--HTKELKIFDS-NSSSPLESCTSHQAPVTLVQSHLSG---ETQLLLS-SSSQDVHLWNASSIAGGPMHS 1591 (1922)
Q Consensus 1519 PDG~lLASGS--~DGtIkIWDl-~tgk~l~tL~gHss~VtsLq~afSp---DG~lLaS-SsDgtVkLWDl~t~~gk~l~t 1591 (1922)
++|+++.+++ .|+.|++|++ .+|+.+.++.+|...++.+ +|++ ++.+|++ +.|++|+|||+.+ ++++++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l--~fs~~~g~~~~LaSgS~D~TIkIWDl~T--Gk~l~t 218 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETIL--TFAEVQGMQEALLGTTIMNNIVIWNLKT--GQLLKK 218 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEE--EEEEEETSTTEEEEEETTSEEEEEETTT--CCEEEE
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeE--EeeccCCCCceEEEecCCCcEEEEECCC--CcEEEE
Confidence 3455444433 5999999999 4588888899999999999 5666 7789999 5699999999998 899999
Q ss_pred eccc-------eeEEEcCCCCEEEEeec---------CCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1592 FEGC-------KAARFSNSGNLFAALPT---------ETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1592 f~gh-------~sVaFSPDG~~LaSgS~---------~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
+.++ .+++|+|+|+++++++. ++.|++|++||..+++++.++.-. . ..+|....+..+.+
T Consensus 219 L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~-~---p~Gh~~~~lsg~~s 294 (356)
T 2w18_A 219 MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC-L---PPGQAGRFLEGDVK 294 (356)
T ss_dssp EECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC-C---CTTCCCCEEEEEEE
T ss_pred EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee-c---cCCCcceeEccccC
Confidence 9753 35689999998754321 278999999999999987765300 0 12555445555555
Q ss_pred CCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCCEEEEEe-----EEEec
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGNEVIINS-----EVWDL 1704 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~~LASGS-----eIWDL 1704 (1922)
+.++++++ +|||+.++++++++.+|...+ +++|||||++|++|+ +|||+
T Consensus 295 g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 295 DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 88888865 999999999999999988754 589999999999999 69986
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.77 E-value=4.5e-17 Score=197.74 Aligned_cols=259 Identities=14% Similarity=0.089 Sum_probs=183.4
Q ss_pred cCceee--EEecCCCCCCEEEEEEcC--------------CCCEEEEEeCC------CcEEEEECCCCCceeeeccCCCC
Q 000177 1496 SRFRPW--RTCRDDAGALLTCITFLG--------------DSSHIAVGSHT------KELKIFDSNSSSPLESCTSHQAP 1553 (1922)
Q Consensus 1496 srfrpi--rtLrgH~d~~Vt~LaFSP--------------DG~lLASGS~D------GtIkIWDl~tgk~l~tL~gHss~ 1553 (1922)
...+.+ .++.+|. ..+..+++++ .+..|+.++.+ ++|++||+. +.....+.+|...
T Consensus 103 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~ 180 (415)
T 2hqs_A 103 APGTVLAQNSYKVNK-QWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQP 180 (415)
T ss_dssp STTCEEEEEEEEECG-GGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSC
T ss_pred CCCCEEeeeEEEcCh-hHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCc
Confidence 455555 5588888 7888888775 26677776664 799999997 5567888889999
Q ss_pred eeEEEeeecCCCcEEEEe-cC---CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1554 VTLVQSHLSGETQLLLSS-SS---QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1554 VtsLq~afSpDG~lLaSS-sD---gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
|.++ +|+|||++|+++ .+ .+|++||+.+ +++. .+.. ..+++|+|+|++|+..+....+..|++||+.
T Consensus 181 v~~~--~~Spdg~~la~~s~~~~~~~i~~~d~~t--g~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~ 255 (415)
T 2hqs_A 181 LMSP--AWSPDGSKLAYVTFESGRSALVIQTLAN--GAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 255 (415)
T ss_dssp EEEE--EECTTSSEEEEEECTTSSCEEEEEETTT--CCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred ceee--EEcCCCCEEEEEEecCCCcEEEEEECCC--CcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence 9999 899999999885 45 3899999987 5543 3332 3789999999988844222234569999999
Q ss_pred CCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEE
Q 000177 1626 TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVI 1696 (1922)
Q Consensus 1626 Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LA 1696 (1922)
+++.. .+. .+......++|+|+|++|++.+ .+||+.+++. ..+..+...+ +++|+|+|++|+
T Consensus 256 ~~~~~-~l~-------~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 256 SGQIR-QVT-------DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMV 326 (415)
T ss_dssp TCCEE-ECC-------CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEE
T ss_pred CCCEE-eCc-------CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEE
Confidence 88763 333 1223345599999999887543 5568887764 3454555555 899999999998
Q ss_pred EEe--------EEEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc
Q 000177 1697 INS--------EVWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1697 SGS--------eIWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys 1767 (1922)
+++ .+||+.+++.. .+..+. ..+++|+|+|++|+++..++. ...+..++....
T Consensus 327 ~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~spdg~~l~~~s~~~~----------------~~~l~~~d~~g~- 388 (415)
T 2hqs_A 327 MVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPSLAPNGTMVIYSSSQGM----------------GSVLNLVSTDGR- 388 (415)
T ss_dssp EEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEEECTTSSEEEEEEEETT----------------EEEEEEEETTSC-
T ss_pred EEECcCCceEEEEEECCCCCEE-EecCCCCcCCeEEcCCCCEEEEEEcCCC----------------ccEEEEEECCCC-
Confidence 876 38999988774 454443 379999999999988753321 124566665432
Q ss_pred eeeeec-cCCceEEEEEcCCCc
Q 000177 1768 DIATIP-VDRCVLDFATERTDS 1788 (1922)
Q Consensus 1768 ~IaTid-vkr~I~dLa~SPdds 1788 (1922)
....+. ....|.+++|+|.-.
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CEEECCCSSSEEEEEEECCCCC
T ss_pred cEEEeeCCCCCCcCCccccccc
Confidence 333333 345799999999654
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.76 E-value=4.1e-16 Score=179.25 Aligned_cols=259 Identities=13% Similarity=0.141 Sum_probs=179.8
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ec-CCcEEEeccCCCCCCc-ce
Q 000177 1515 ITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SS-SQDVHLWNASSIAGGP-MH 1590 (1922)
Q Consensus 1515 LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-Ss-DgtVkLWDl~t~~gk~-l~ 1590 (1922)
..|.++++ .+++++.++.|++||+.+++.+..+..+...+ .+ .|+|+++++++ +. ++.|.+||+.+ ++. ..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~--~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~ 77 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DT--AITSDCSNVVVTSDFCQTLVQIETQL--EPPKVV 77 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EE--EECSSSCEEEEEESTTCEEEEEECSS--SSCEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eE--EEcCCCCEEEEEeCCCCeEEEEECCC--CceeEE
Confidence 34666555 47788899999999999999988887766667 88 89999996655 44 88999999987 565 44
Q ss_pred Eecc---cee-EEEcCCCCEEEEeecCCCC-C--eEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1591 SFEG---CKA-ARFSNSGNLFAALPTETSD-R--GILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1591 tf~g---h~s-VaFSPDG~~LaSgS~~S~D-g--tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
.+.. ... ++|+|+|++++++ ..+ + .|.+||+.+++.+..+. .+.....++|+|+|+++++.+
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~---~~~~~~~~i~v~d~~~~~~~~~~~--------~~~~~~~~~~spdg~~l~~~~ 146 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTV---TGLNHPFNMQSYSFLKNKFISTIP--------IPYDAVGIAISPNGNGLILID 146 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEEC---CCSSSSCEEEEEETTTTEEEEEEE--------CCTTEEEEEECTTSSCEEEEE
T ss_pred ecccCCCCccceEECCCCCEEEEe---cCCCCcccEEEEECCCCCeEEEEE--------CCCCccceEECCCCCEEEEEe
Confidence 4443 245 9999999999854 333 3 99999999999888775 233345699999998665432
Q ss_pred -------EEEEcCCCcce-----eeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeE---EEEEcCCCc-eeE
Q 000177 1664 -------ILWDRRNSVPV-----HRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRL---LRSVPSLDQ-TTI 1721 (1922)
Q Consensus 1664 -------rLWDlrtgk~I-----~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgkl---L~tl~gH~~-~sV 1721 (1922)
.+|++.....+ ..+........++|+|+|++++.++ .+||+.+++. +..++.+.. ..+
T Consensus 147 ~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~ 226 (331)
T 3u4y_A 147 RSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTI 226 (331)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCE
T ss_pred cCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceE
Confidence 58998754433 2222223334899999999776655 4999999988 888875544 799
Q ss_pred EEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCce--eeeecc-----CC---ceEEEEEcCCCceEE
Q 000177 1722 TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSD--IATIPV-----DR---CVLDFATERTDSFVG 1791 (1922)
Q Consensus 1722 aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~--IaTidv-----kr---~I~dLa~SPdds~LA 1791 (1922)
+|+|+|++++++...+ ..+.++|..+.+. +..+.. .. ....++|+|+++++.
T Consensus 227 ~~spdg~~l~v~~~~~------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 288 (331)
T 3u4y_A 227 VVSRDGSTVYVLTEST------------------VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF 288 (331)
T ss_dssp EECTTSSEEEEECSSE------------------EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred EECCCCCEEEEEEcCC------------------CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence 9999999988773211 2234455444333 222211 11 134589999999988
Q ss_pred EEecCCCCCccceEEEEEecC
Q 000177 1792 LITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1792 VVe~dds~d~dSsVRLyEVGr 1812 (1922)
+...+ ...+.+|++..
T Consensus 289 v~~~~-----~~~v~v~d~~~ 304 (331)
T 3u4y_A 289 ISANI-----SRELKVFTISG 304 (331)
T ss_dssp EEETT-----TTEEEEEETTS
T ss_pred EecCC-----CCcEEEEEecC
Confidence 76422 36789998753
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.76 E-value=5.3e-17 Score=197.10 Aligned_cols=265 Identities=9% Similarity=0.043 Sum_probs=186.2
Q ss_pred CEEEEEEcCCCC-EEEEEe----CCC----cEEEEEC--CCCCce--eeeccCCCCeeEEEeeecC--------------
Q 000177 1511 LLTCITFLGDSS-HIAVGS----HTK----ELKIFDS--NSSSPL--ESCTSHQAPVTLVQSHLSG-------------- 1563 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~-lLASGS----~DG----tIkIWDl--~tgk~l--~tL~gHss~VtsLq~afSp-------------- 1563 (1922)
.|....|++.|. ++++|+ .|| +|+|||+ .+++++ ..+.+|...+..+ ++++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYA--GHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHH--HHHHHHHHHHHHHSSCCC
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHH--HHHHHHHHHHHHcCCCCc
Confidence 455667877665 666876 467 8999999 999887 4588999888887 5553
Q ss_pred -CCcEEEEecC------CcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee
Q 000177 1564 -ETQLLLSSSS------QDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1564 -DG~lLaSSsD------gtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t 1632 (1922)
.+++++++.+ ++|++||+.. .....+.+ +.+++|+|+|++|++++.+..+..|++||+.++++...
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g---~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l 218 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDG---YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV 218 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTS---CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCC---CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEe
Confidence 3444444433 7999999974 34555554 37899999999999985443346999999999887543
Q ss_pred eccccccccCCCCcceEEEEcCCCCeEe-ecc-------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe----
Q 000177 1633 LSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG-------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1633 L~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg-------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
.. +......++|+|+|++|+ +++ ++||+.+++. ..+..+...+ ++.|+|+|++|++++
T Consensus 219 ~~--------~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g 289 (415)
T 2hqs_A 219 AS--------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAG 289 (415)
T ss_dssp EC--------CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTS
T ss_pred ec--------CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCC
Confidence 22 123345599999999877 432 7889988865 5676777666 899999999998876
Q ss_pred --E--EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec
Q 000177 1700 --E--VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP 1773 (1922)
Q Consensus 1700 --e--IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid 1773 (1922)
. +||+.+++.. .+..+.. .+++|+|+|++|+++...+. ...+.+++..+.... .+.
T Consensus 290 ~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g----------------~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 290 RPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGG----------------QQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp SCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSS----------------CEEEEEEETTTCCEE-ECC
T ss_pred CcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCC----------------ceEEEEEECCCCCEE-Eec
Confidence 3 5588877643 3433333 68999999999998854321 234566676554432 222
Q ss_pred cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1774 VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1774 vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
....+..++|+|++++|+....+. ....+.+|++
T Consensus 352 ~~~~~~~~~~spdg~~l~~~s~~~---~~~~l~~~d~ 385 (415)
T 2hqs_A 352 STFLDETPSLAPNGTMVIYSSSQG---MGSVLNLVST 385 (415)
T ss_dssp CSSSCEEEEECTTSSEEEEEEEET---TEEEEEEEET
T ss_pred CCCCcCCeEEcCCCCEEEEEEcCC---CccEEEEEEC
Confidence 233789999999999988775332 1235677765
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.75 E-value=1.5e-16 Score=204.27 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=186.8
Q ss_pred CCEEEEEEcCCCCEEEEEeC-CC-----cEEEEECCCCCceeeeccCCC------------------------CeeEEEe
Q 000177 1510 ALLTCITFLGDSSHIAVGSH-TK-----ELKIFDSNSSSPLESCTSHQA------------------------PVTLVQS 1559 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~-DG-----tIkIWDl~tgk~l~tL~gHss------------------------~VtsLq~ 1559 (1922)
..|++++|||||++|++++. |+ +|++||+.+++....+..|.. .|.++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-- 114 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY-- 114 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC--
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee--
Confidence 56999999999999999998 88 999999999988777755433 37788
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCC--cceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeee
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGG--PMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk--~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL 1633 (1922)
+|||||++|+++.+++|++||+.+ +. .+..+.. +.+++|+|||++|+++ + ++.|++||+.+++.....
T Consensus 115 ~~SpDg~~l~~~~~~~i~~~d~~~--~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~---~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 115 QWSPDAQRLLFPLGGELYLYDLKQ--EGKAAVRQLTHGEGFATDAKLSPKGGFVSFI---R-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp EECTTSSEEEEEETTEEEEEESSS--CSTTSCCBCCCSSSCEEEEEECTTSSEEEEE---E-TTEEEEEETTTTEEEECC
T ss_pred EECCCCCEEEEEeCCcEEEEECCC--CCcceEEEcccCCcccccccCCCCCCEEEEE---e-CCcEEEEecCCCCEEEec
Confidence 899999999997779999999987 41 2333333 4789999999999997 3 468999999988765543
Q ss_pred ccccccccCCCC----------cceEEEEcCCCCeEeec-------------------------------------c-EE
Q 000177 1634 SDTSVNLTGRGH----------AYSQIHFSPSDTMLLWN-------------------------------------G-IL 1665 (1922)
Q Consensus 1634 ~d~s~~~~~~gh----------~~~vVaFSPdG~lLaSg-------------------------------------g-rL 1665 (1922)
...... ...++ ....++|||||++|++. . .+
T Consensus 189 ~~~~~~-~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 ADGSTT-IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCSS-EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred cCCccc-eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 310000 00000 02348999999988854 1 57
Q ss_pred EEcCC-Ccceeeec--cCCCce-EEEEecCCCEEEEEe----------EEEecCCCeEEEEEcCCCc------eeEEEcc
Q 000177 1666 WDRRN-SVPVHRFD--QFTDHG-GGGFHPAGNEVIINS----------EVWDLRKFRLLRSVPSLDQ------TTITFNA 1725 (1922)
Q Consensus 1666 WDlrt-gk~I~kf~--gh~~~V-sVaFSPdG~~LASGS----------eIWDLrTgklL~tl~gH~~------~sVaFSP 1725 (1922)
||+.+ ++...... .+...+ .++| |||++|++++ .+||+.+++....+..+.. ..++|+|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC
Confidence 88888 77654433 244555 8999 9999998764 3899999988777665432 4899999
Q ss_pred CCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec-cCCceEEE-EEcCCCceEEEEecCCCCCccc
Q 000177 1726 RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP-VDRCVLDF-ATERTDSFVGLITMDDQEDMFS 1803 (1922)
Q Consensus 1726 dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid-vkr~I~dL-a~SPdds~LAVVe~dds~d~dS 1803 (1922)
+|++++++..+.. ..+..++.... +..+. ....+..+ .|+|++..+++....+ ...
T Consensus 347 dg~~~~~~~~~g~-----------------~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~---~~~ 404 (741)
T 2ecf_A 347 DGSILWSSERTGF-----------------QHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIE---SAR 404 (741)
T ss_dssp TSCEEEEECTTSS-----------------CEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSS---CTT
T ss_pred CCeEEEEecCCCc-----------------cEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCC---CCc
Confidence 9997777632221 11222332111 22222 24457776 5999999887765322 123
Q ss_pred eEEEEEec
Q 000177 1804 SARIYEIG 1811 (1922)
Q Consensus 1804 sVRLyEVG 1811 (1922)
.++||.+.
T Consensus 405 ~~~l~~~~ 412 (741)
T 2ecf_A 405 ESQIYAVP 412 (741)
T ss_dssp CBEEEEEE
T ss_pred eEEEEEEE
Confidence 67888874
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.75 E-value=1.7e-16 Score=203.70 Aligned_cols=269 Identities=8% Similarity=0.021 Sum_probs=185.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
|.+++|||||++|++++. +.|++||+.++. ....+..|...+..+ .|||||++|++++++.|++||+.+ ++..
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~--~~SPDG~~la~~~~~~i~~~d~~~--g~~~ 185 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDA--KLSPKGGFVSFIRGRNLWVIDLAS--GRQM 185 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEE--EECTTSSEEEEEETTEEEEEETTT--TEEE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccc--cCCCCCCEEEEEeCCcEEEEecCC--CCEE
Confidence 789999999999999987 999999998883 456677888899999 899999999998888999999986 4433
Q ss_pred eEecc--------------------ceeEEEcCCCCEEEEeecCCC------------------------------CCeE
Q 000177 1590 HSFEG--------------------CKAARFSNSGNLFAALPTETS------------------------------DRGI 1619 (1922)
Q Consensus 1590 ~tf~g--------------------h~sVaFSPDG~~LaSgS~~S~------------------------------DgtI 1619 (1922)
..... ...+.|+|||++|++++.+.. ...|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 32221 267999999999998833210 0178
Q ss_pred EEEECCC-CceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeeccCCC----ce
Q 000177 1620 LLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQFTD----HG 1684 (1922)
Q Consensus 1620 rIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~gh~~----~V 1684 (1922)
++||+.+ ++....... ..+......++| |||++|+..+ .+||+.++++...+..+.. .+
T Consensus 266 ~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLG-----KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLH 339 (741)
T ss_dssp EEECSSTTCCCEEECCC-----SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCC
T ss_pred EEEECCCCCceEEecCC-----CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcC
Confidence 8999998 776543320 012233445999 9999988432 8999999987776665543 23
Q ss_pred -EEEEecCCCEEEEEe-----EEEecC-CCeEEEEEcCCCc--eeE-EEccCCCEEEEEEccCchhhhhhhcccccccCC
Q 000177 1685 -GGGFHPAGNEVIINS-----EVWDLR-KFRLLRSVPSLDQ--TTI-TFNARGDVIYAILRRNLEDVMSAVHTRRVKHPL 1754 (1922)
Q Consensus 1685 -sVaFSPdG~~LASGS-----eIWDLr-TgklL~tl~gH~~--~sV-aFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~ 1754 (1922)
.+.|+|+|+++++++ +||.+. +++ +..+..+.. ..+ .|+|+|+.|+.....+..
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~--------------- 403 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA--------------- 403 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT---------------
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC---------------
Confidence 789999999888776 488765 355 677766654 455 699999988766433210
Q ss_pred cceEEEEecC-CCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1755 FAAFRTVDAI-NYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1755 ~ssFrt~Da~-dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
...++|+.. +...+..+.....+..++|+|+++++++...... .-..+.+++.
T Consensus 404 -~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~p~~~~l~~~ 457 (741)
T 2ecf_A 404 -RESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNS--TPPQIELFRA 457 (741)
T ss_dssp -TCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETT--EEEEEEEEET
T ss_pred -ceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCC--CCCeEEEEEc
Confidence 012222211 1222333333556889999999999987753321 1234556654
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.74 E-value=8.4e-16 Score=176.62 Aligned_cols=232 Identities=12% Similarity=0.120 Sum_probs=169.3
Q ss_pred eeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCc-eeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSH-TKELKIFDSNSSSP-LESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~-l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
.|.....+.+..+..+. ..+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+..++.++ .|+|++++|+
T Consensus 24 ~~d~~~~~~~~~~~~~~-~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~ 99 (331)
T 3u4y_A 24 FFSTDTLEILNQITLGY-DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADV--DITPDDQFAV 99 (331)
T ss_dssp EEETTTCCEEEEEECCC-CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCE--EECTTSSEEE
T ss_pred EEeCcccceeeeEEccC-Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccce--EECCCCCEEE
Confidence 33345566666666665 667 9999999997776665 89999999999988 77777777777768 8899999988
Q ss_pred EecCC----cEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCe-EEEEECCCCceeeeecccccccc
Q 000177 1570 SSSSQ----DVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRG-ILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1570 SSsDg----tVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~Dgt-IrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
++.+. .|.+||+.+ ++.+..+.. ..+++|+|+|++++++. ..++. |.+|++.....+.... ....
T Consensus 100 ~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~i~~~~~~~~g~~~~~~-~~~~-- 172 (331)
T 3u4y_A 100 TVTGLNHPFNMQSYSFLK--NKFISTIPIPYDAVGIAISPNGNGLILID--RSSANTVRRFKIDADGVLFDTG-QEFI-- 172 (331)
T ss_dssp ECCCSSSSCEEEEEETTT--TEEEEEEECCTTEEEEEECTTSSCEEEEE--ETTTTEEEEEEECTTCCEEEEE-EEEE--
T ss_pred EecCCCCcccEEEEECCC--CCeEEEEECCCCccceEECCCCCEEEEEe--cCCCceEEEEEECCCCcEeecC-Cccc--
Confidence 75433 899999987 666666643 37899999998666552 44567 9999998644432221 0000
Q ss_pred CCCCcceEEEEcCCCCeEe-ecc-----EEEEcCCCcc---eeeeccCCCceEEEEecCCCEEEEEe------EEEecCC
Q 000177 1642 GRGHAYSQIHFSPSDTMLL-WNG-----ILWDRRNSVP---VHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRK 1706 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrtgk~---I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrT 1706 (1922)
..+.....++|+|+|++++ ++. .+||+.+++. +..+........++|+|+|++|++++ .+||+.+
T Consensus 173 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 173 SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 1233445599999999654 332 8999999988 88887665555899999999876654 3999999
Q ss_pred CeE--EEEEcCC----Cc-----eeEEEccCCCEEEEEE
Q 000177 1707 FRL--LRSVPSL----DQ-----TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1707 gkl--L~tl~gH----~~-----~sVaFSPdG~~LaSgs 1734 (1922)
+++ +..+..+ .. +.++|+|+|++|+++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 253 GTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp TEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred CceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 887 5555533 11 3589999999998774
No 134
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=1.5e-16 Score=176.51 Aligned_cols=219 Identities=16% Similarity=0.156 Sum_probs=160.4
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCceeeeccC-CCCeeEEEeeecCCCcEEEEec---CCcE
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-SSPLESCTSH-QAPVTLVQSHLSGETQLLLSSS---SQDV 1576 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-gk~l~tL~gH-ss~VtsLq~afSpDG~lLaSSs---DgtV 1576 (1922)
..+..|. ..|.+++|+|+|++|++++ ++.|++||+.+ ++....+.+| ...|.++ .|+|++++|+++. ++.+
T Consensus 35 ~~~~~~~-~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 35 RVVWQTP-ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDH--GISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEES-SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCC--EECTTSSEEEEEECTTTSSC
T ss_pred eeeccCC-cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccce--EECCCCCEEEEEEeCCCCcc
Confidence 3456687 8999999999999999987 88999999999 8877777666 4778888 8899999998853 3456
Q ss_pred EEeccCCCCCCcceEecc---ceeEEEcCCCCEEE-EeecCCCCCeEEEEECC--CCceeeeeccccccccCCCCcceEE
Q 000177 1577 HLWNASSIAGGPMHSFEG---CKAARFSNSGNLFA-ALPTETSDRGILLYDIQ--TYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~La-SgS~~S~DgtIrIWDlr--Tgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
.||.+....+. ...+.. ...++|+|++++|+ ++ ..++.++||++. +++. ..+. .+......+
T Consensus 111 ~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~---~~~~~~~l~~~~~~~~~~-~~~~-------~~~~~~~~~ 178 (297)
T 2ojh_A 111 AIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCG---IRDQVFDIYSMDIDSGVE-TRLT-------HGEGRNDGP 178 (297)
T ss_dssp EEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEE---EETTEEEEEEEETTTCCE-EECC-------CSSSCEEEE
T ss_pred eEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEE---CCCCceEEEEEECCCCcc-eEcc-------cCCCccccc
Confidence 66655431133 333332 47789999999887 45 567889999864 3333 3332 122344559
Q ss_pred EEcCCCCeEeecc------EEEEcC-CCcceeeeccCCCce-EEEEecCCCEEEEEe----------------EEEecCC
Q 000177 1651 HFSPSDTMLLWNG------ILWDRR-NSVPVHRFDQFTDHG-GGGFHPAGNEVIINS----------------EVWDLRK 1706 (1922)
Q Consensus 1651 aFSPdG~lLaSgg------rLWDlr-tgk~I~kf~gh~~~V-sVaFSPdG~~LASGS----------------eIWDLrT 1706 (1922)
+|+|+|++|+..+ .+|++. .+..+..+..+...+ ++.|+|+|++|++++ .+||+.+
T Consensus 179 ~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred eECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 9999999877432 899987 566777777777666 899999999887764 2789988
Q ss_pred CeE--EEEEcCCCc--eeEEEccCCCEEEEEEcc
Q 000177 1707 FRL--LRSVPSLDQ--TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1707 gkl--L~tl~gH~~--~sVaFSPdG~~LaSgs~~ 1736 (1922)
++. +..+.+|.. ..++|+|+|++|+++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 259 GNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp CSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 765 444445543 789999999999988543
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.73 E-value=6e-17 Score=206.96 Aligned_cols=276 Identities=12% Similarity=0.077 Sum_probs=186.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCC---CeeEEEeeecCCCcEEEEec-C---------CcEE
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQA---PVTLVQSHLSGETQLLLSSS-S---------QDVH 1577 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss---~VtsLq~afSpDG~lLaSSs-D---------gtVk 1577 (1922)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.++ +|||||++|+++. + +.|+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~--~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRY--EISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEE--EECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceE--EECCCCCEEEEEecCccceeecceeeEE
Confidence 3668899999998877 7899999999999998888887765 49999 8999999998853 2 7789
Q ss_pred EeccCCCCCCcceEec---c----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC-----
Q 000177 1578 LWNASSIAGGPMHSFE---G----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH----- 1645 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~---g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh----- 1645 (1922)
+||+.+ +++ ..+. + +..++|+|||++|+++ + ++.|++||+.+++...............++
T Consensus 95 ~~d~~~--~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~---~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 95 LSKIPH--GDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFI---F-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EEESSS--CCC-EECCCTTCCSCCCSBCCBCSSTTCEEEE---E-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHH
T ss_pred EEECCC--Cce-EeccCCccccccccccEECCCCCEEEEE---E-CCeEEEEECCCCceEEEecCCCCCceECcccceeE
Confidence 999987 544 2332 2 3679999999999997 3 378999999998876554311000000000
Q ss_pred ------cceEEEEcCCCCeEeecc---------------------------------------EEEEcCCCcceeeeccC
Q 000177 1646 ------AYSQIHFSPSDTMLLWNG---------------------------------------ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1646 ------~~~vVaFSPdG~lLaSgg---------------------------------------rLWDlrtgk~I~kf~gh 1680 (1922)
....++|||||++|++.+ ++||+.+++....+..+
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 124599999999888531 68898888766666554
Q ss_pred ------CCce-EEEEecCCCEEEEEe---------EEEecCCCeEEEEEcCC-Cc------eeEEEccCCCEEEEE-Ecc
Q 000177 1681 ------TDHG-GGGFHPAGNEVIINS---------EVWDLRKFRLLRSVPSL-DQ------TTITFNARGDVIYAI-LRR 1736 (1922)
Q Consensus 1681 ------~~~V-sVaFSPdG~~LASGS---------eIWDLrTgklL~tl~gH-~~------~sVaFSPdG~~LaSg-s~~ 1736 (1922)
...+ .+.|+|||++|++.+ .+||+.++++...+..+ .. ..++|+|+|+.|+.. ...
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 327 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP 327 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence 3445 899999999887664 38999999877665432 22 279999999988765 322
Q ss_pred CchhhhhhhcccccccCCcceEEEEe-cCCCce--eeeec-cCCceEE-EEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1737 NLEDVMSAVHTRRVKHPLFAAFRTVD-AINYSD--IATIP-VDRCVLD-FATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1737 d~~dv~s~lh~rr~ksp~~ssFrt~D-a~dys~--IaTid-vkr~I~d-La~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+... .....+..++ ...... +..+. ....+.. ++|+|+++.|+....++ ....+++|.+.
T Consensus 328 ~~~~------------~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~---~~~~~~l~~~~ 392 (723)
T 1xfd_A 328 QGGR------------GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTED---LPRRRQLYSAN 392 (723)
T ss_dssp CSSS------------SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSS---CTTCCEEEEEC
T ss_pred cCCC------------cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCC---CCcceEEEEEe
Confidence 2100 0011344455 222220 22222 2333444 68999999998775332 12457888874
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.73 E-value=5.6e-16 Score=176.67 Aligned_cols=251 Identities=13% Similarity=0.127 Sum_probs=186.3
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeecc-CCC-CeeEEEeeecCCCcEEE-Ee-cCCcEEEeccCCCCCCcceEec----
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTS-HQA-PVTLVQSHLSGETQLLL-SS-SSQDVHLWNASSIAGGPMHSFE---- 1593 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~g-Hss-~VtsLq~afSpDG~lLa-SS-sDgtVkLWDl~t~~gk~l~tf~---- 1593 (1922)
++|++++.+++|++||+.+++.+..+.. +.. .+..+ +|+|++++++ ++ .++.|.+||+.+ ++.+..+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~~~~~~~~~~ 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVP--MVAPGGRIAYATVNKSESLVKIDLVT--GETLGRIDLSTP 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCE--EECTTSSEEEEEETTTTEEEEEETTT--CCEEEEEECCBT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccce--EEcCCCCEEEEEeCCCCeEEEEECCC--CCeEeeEEcCCc
Confidence 4799999999999999999988887753 322 47888 8899997654 44 478999999987 66665554
Q ss_pred -----cceeEEEcCCCCEEEEeecCC---------CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1594 -----GCKAARFSNSGNLFAALPTET---------SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1594 -----gh~sVaFSPDG~~LaSgS~~S---------~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
....++|+|+|++++++..+. .++.|.+||+.+++.+..+. .+.....++|+|+|+++
T Consensus 78 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l 149 (337)
T 1pby_B 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE--------APRQITMLAWARDGSKL 149 (337)
T ss_dssp TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE--------CCSSCCCEEECTTSSCE
T ss_pred ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe--------CCCCcceeEECCCCCEE
Confidence 346799999999888873110 47999999999988877765 12334448899999977
Q ss_pred eecc---EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----------------------------EEEecCCC
Q 000177 1660 LWNG---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----------------------------EVWDLRKF 1707 (1922)
Q Consensus 1660 aSgg---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----------------------------eIWDLrTg 1707 (1922)
++++ .+||+.+++.+..+..+.....+.|+|+|.+++..+ .+||+.++
T Consensus 150 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 229 (337)
T 1pby_B 150 YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229 (337)
T ss_dssp EEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC
T ss_pred EEeCCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCC
Confidence 6555 999999998887776554222347899988664433 48999988
Q ss_pred eEE-EEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEc
Q 000177 1708 RLL-RSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATE 1784 (1922)
Q Consensus 1708 klL-~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~S 1784 (1922)
+.. ..+..+.. ..++|+|+|++++++. ..+.+||..+.+.+..+.....+..++|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~---------------------~~v~~~d~~~~~~~~~~~~~~~~~~~~~s 288 (337)
T 1pby_B 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAY---------------------NVLESFDLEKNASIKRVPLPHSYYSVNVS 288 (337)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEE---------------------SEEEEEETTTTEEEEEEECSSCCCEEEEC
T ss_pred CceEeecCCCCCceeeEEECCCCCEEEEeC---------------------CeEEEEECCCCcCcceecCCCceeeEEEC
Confidence 765 12223332 6899999999999871 23567777777777777777788999999
Q ss_pred CCCceEEEEecCCCCCccceEEEEEec
Q 000177 1785 RTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1785 Pdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
|+++++.+.. .+..+++|++.
T Consensus 289 ~dg~~l~~~~------~~~~i~v~d~~ 309 (337)
T 1pby_B 289 TDGSTVWLGG------ALGDLAAYDAE 309 (337)
T ss_dssp TTSCEEEEES------BSSEEEEEETT
T ss_pred CCCCEEEEEc------CCCcEEEEECc
Confidence 9999888752 13678888764
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.72 E-value=6.3e-16 Score=195.14 Aligned_cols=271 Identities=11% Similarity=0.081 Sum_probs=196.3
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEecc--CCCCCCcceEec
Q 000177 1517 FLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNA--SSIAGGPMHSFE 1593 (1922)
Q Consensus 1517 FSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl--~t~~gk~l~tf~ 1593 (1922)
|+|++.++++++.|++|.+||..+++++.++..+.. +..+ .|+|||++|++ +.|++|.+||+ .+ ++++.++.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v--~~spdg~~l~v~~~d~~V~v~D~~~~t--~~~~~~i~ 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHIS--RMSASGRYLLVIGRDARIDMIDLWAKE--PTKVAEIK 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEE--EECTTSCEEEEEETTSEEEEEETTSSS--CEEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceE--EECCCCCEEEEECCCCeEEEEECcCCC--CcEEEEEe
Confidence 889999999999999999999999999999973333 8888 89999999988 45899999999 66 66777765
Q ss_pred c---ceeEEEcC----CCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc---CC-CCcceEEEEcCCCCeEeec
Q 000177 1594 G---CKAARFSN----SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT---GR-GHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1594 g---h~sVaFSP----DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~---~~-gh~~~vVaFSPdG~lLaSg 1662 (1922)
. .++++|+| +|+++++++ ..+++|.+||..+++++.++........ .+ +.....+.|+|++..++..
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~--~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGA--YWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEE--EESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEE--ccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 3 37899999 999999882 2479999999999999988862110000 00 1123448999988766533
Q ss_pred c------EEEEcCCCccee--eeccCCCce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcC----CCceeEE-
Q 000177 1663 G------ILWDRRNSVPVH--RFDQFTDHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPS----LDQTTIT- 1722 (1922)
Q Consensus 1663 g------rLWDlrtgk~I~--kf~gh~~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~g----H~~~sVa- 1722 (1922)
. .+||+.+.+.+. .+. +.... .+.|+|+|+++++++ .+||+.+++++.++.. |....+.
T Consensus 298 ~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~ 376 (543)
T 1nir_A 298 VKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 376 (543)
T ss_dssp ETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE
T ss_pred ECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc
Confidence 2 789988876544 443 33334 899999999877665 4999999999999884 5433333
Q ss_pred EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-------CceeeeeccC-CceEEEEEcCCCceEEEEe
Q 000177 1723 FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-------YSDIATIPVD-RCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1723 FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-------ys~IaTidvk-r~I~dLa~SPdds~LAVVe 1794 (1922)
++|++..++++... .+..+.+|+..+ ++.+.++... ..+..++++|+++++++..
T Consensus 377 ~~p~~g~~~~s~~~-----------------~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 377 VHPKYGPVWSTSHL-----------------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp EETTTEEEEEEEBS-----------------SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CCCCCccEEEeccC-----------------CCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 47874444443211 123567777666 8888888875 4578899999999999753
Q ss_pred c-CCCCCccceEEEEEecC
Q 000177 1795 M-DDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1795 ~-dds~d~dSsVRLyEVGr 1812 (1922)
. ....+.+..|.+|++..
T Consensus 440 ~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 440 TFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TTCSSHHHHTCEEEEETTC
T ss_pred CCCCCcccCceEEEEECCC
Confidence 1 11011356899998753
No 138
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.72 E-value=5.9e-16 Score=185.13 Aligned_cols=227 Identities=12% Similarity=0.162 Sum_probs=155.0
Q ss_pred CceeeEEecCCCCCC---EEEEEEcCCCC---EEEEEeCCCcEEEEECCCC---CceeeeccCCCCeeEEEe--------
Q 000177 1497 RFRPWRTCRDDAGAL---LTCITFLGDSS---HIAVGSHTKELKIFDSNSS---SPLESCTSHQAPVTLVQS-------- 1559 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~---Vt~LaFSPDG~---lLASGS~DGtIkIWDl~tg---k~l~tL~gHss~VtsLq~-------- 1559 (1922)
+++.+..|+.-.++. +.++-|-.-|- .|++++ ..+|++|+..++ +.++++.+|..+|..|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 102 (356)
T 2w18_A 24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV 102 (356)
T ss_dssp CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence 345566666544233 34444544322 455555 568999999988 778888888876655411
Q ss_pred ---------------eecCC----CcEEEE-e-----------------c---CCcEEEeccCCCCCCcceEeccc----
Q 000177 1560 ---------------HLSGE----TQLLLS-S-----------------S---SQDVHLWNASSIAGGPMHSFEGC---- 1595 (1922)
Q Consensus 1560 ---------------afSpD----G~lLaS-S-----------------s---DgtVkLWDl~t~~gk~l~tf~gh---- 1595 (1922)
+++|| ++++++ | . |++|++|++.. .++.+.++.+|
T Consensus 103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~-dG~~~~s~~~~~~~v 181 (356)
T 2w18_A 103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE-DGGGKENQFLMPPEE 181 (356)
T ss_dssp EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT-TSCEEEEEEECCCSS
T ss_pred eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC-CCceeeeeccCCCce
Confidence 55667 666654 1 2 78888888843 25555555544
Q ss_pred eeEEEcC---CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC--cceEEEEcCCCCeEe----------
Q 000177 1596 KAARFSN---SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH--AYSQIHFSPSDTMLL---------- 1660 (1922)
Q Consensus 1596 ~sVaFSP---DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh--~~~vVaFSPdG~lLa---------- 1660 (1922)
+.++|+| ++.+|+++ +.|++|+|||+.+|+++.++.. .+.+ ....++|+|+|.+++
T Consensus 182 ~~l~fs~~~g~~~~LaSg---S~D~TIkIWDl~TGk~l~tL~g------~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~ 252 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGT---TIMNNIVIWNLKTGQLLKKMHI------DDSYQASVCHKAYSEMGLLFIVLSHPCAKES 252 (356)
T ss_dssp CEEEEEEEETSTTEEEEE---ETTSEEEEEETTTCCEEEEEEC------CC---CCCEEEEEEETTEEEEEEC-------
T ss_pred eeEEeeccCCCCceEEEe---cCCCcEEEEECCCCcEEEEEcC------CCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence 6788888 67999999 8999999999999999999861 1111 233478999999874
Q ss_pred --ecc-----EEEEcCCCcceeee-----ccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc---ee
Q 000177 1661 --WNG-----ILWDRRNSVPVHRF-----DQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TT 1720 (1922)
Q Consensus 1661 --Sgg-----rLWDlrtgk~I~kf-----~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---~s 1720 (1922)
+++ ++||..+++.+..+ ++|...+ +..+.++.++++++ +|||+.++++++++.+|.. .+
T Consensus 253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~-lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~ 331 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRF-LEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF 331 (356)
T ss_dssp -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCE-EEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred eeccCCCcEEEEEECCCCEEEEEEEeeccCCCccee-EccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence 333 89999999887765 3555443 23333488899988 6999999999999998865 36
Q ss_pred EEEccCCCEEEEEEc
Q 000177 1721 ITFNARGDVIYAILR 1735 (1922)
Q Consensus 1721 VaFSPdG~~LaSgs~ 1735 (1922)
++|||+|++|++++.
T Consensus 332 vafSPDG~~LaSGS~ 346 (356)
T 2w18_A 332 VKWSGTDSHLLAGQK 346 (356)
T ss_dssp EEECSSSSEEEEECT
T ss_pred EEECCCCCEEEEEEC
Confidence 899999999999953
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.71 E-value=1.4e-15 Score=194.37 Aligned_cols=275 Identities=12% Similarity=0.067 Sum_probs=187.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCC---CC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSI---AG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~---~g 1586 (1922)
..|++++|||| ++++.+ .+++|++||+.+++.. .+..|...+.++ .|||||++|+++.++.|++||+.+. .+
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~--~~SpdG~~la~~~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASL--DFSPVGDRVAYVRNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTC--EECTTSSEEEEEETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE-EccCCcccccCC--cCCCCCCEEEEEECCeEEEEecCcccccCC
Confidence 35999999999 665555 4599999999887654 445567778888 8899999999988999999999750 01
Q ss_pred CcceEec---c---------------ceeEEEcCCCCEEEEeecC------------------------------CCCCe
Q 000177 1587 GPMHSFE---G---------------CKAARFSNSGNLFAALPTE------------------------------TSDRG 1618 (1922)
Q Consensus 1587 k~l~tf~---g---------------h~sVaFSPDG~~LaSgS~~------------------------------S~Dgt 1618 (1922)
+...... . ..++.|+|||++|++++.+ ..+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 2222111 1 2689999999999998421 14578
Q ss_pred EEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeec--cCCC---c
Q 000177 1619 ILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFD--QFTD---H 1683 (1922)
Q Consensus 1619 IrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~--gh~~---~ 1683 (1922)
|++||+.+++...... ...+......++|+|+|++|++.+ .+||+.+++.+..+. .+.. .
T Consensus 237 l~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQT-----GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEEETTTTEEEECCC-----CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred EEEEECCCCceEeecc-----CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 9999999887654332 001223344599999999888632 799999984433332 1222 1
Q ss_pred e-EEEEec--CCCEEEEEe-----EEEecC-CCeEEEEEcCCCc--ee-EEEccCCCEEEEEEccCchhhhhhhcccccc
Q 000177 1684 G-GGGFHP--AGNEVIINS-----EVWDLR-KFRLLRSVPSLDQ--TT-ITFNARGDVIYAILRRNLEDVMSAVHTRRVK 1751 (1922)
Q Consensus 1684 V-sVaFSP--dG~~LASGS-----eIWDLr-TgklL~tl~gH~~--~s-VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~k 1751 (1922)
+ .+.|+| +|++|++++ +||.+. +++.+..+..+.. .. ++|+|+|+.|+.+...+.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~------------- 378 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS------------- 378 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC-------------
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC-------------
Confidence 2 689999 999988876 599886 6777788876654 34 899999999887743321
Q ss_pred cCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1752 HPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1752 sp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+....+..++..+.. +..+.....+..++|+|+++++++...+.. .-..+.+|++.
T Consensus 379 -~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~--~p~~i~l~d~~ 434 (706)
T 2z3z_A 379 -PLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPT--VPRKVTVTNIG 434 (706)
T ss_dssp -TTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSS--CSCEEEEEESS
T ss_pred -CceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCC--CCcEEEEEECC
Confidence 112234455544332 333334556899999999999887753332 22567888764
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.71 E-value=5.7e-16 Score=198.02 Aligned_cols=279 Identities=10% Similarity=0.062 Sum_probs=182.1
Q ss_pred ecCceeeEEecCCCCC---CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCceeee---ccCCCCeeEEEe
Q 000177 1495 YSRFRPWRTCRDDAGA---LLTCITFLGDSSHIAVGSHT---------KELKIFDSNSSSPLESC---TSHQAPVTLVQS 1559 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~---~Vt~LaFSPDG~lLASGS~D---------GtIkIWDl~tgk~l~tL---~gHss~VtsLq~ 1559 (1922)
....+....+.+|. . .|++++|||||++|++++.+ +.|.+||+.+++. ..+ .+|...|..+
T Consensus 44 ~~~g~~~~~~~~~~-~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~-- 119 (723)
T 1xfd_A 44 VETNTSTVLIEGKK-IESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYA-- 119 (723)
T ss_dssp GGGCCCEEEECTTT-TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBC--
T ss_pred CCCCcEEEEecccc-ccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCcccccccccc--
Confidence 34455566676666 4 49999999999999999875 7888999998876 333 4555668888
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----c------------------eeEEEcCCCCEEEEeecCCC--
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----C------------------KAARFSNSGNLFAALPTETS-- 1615 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h------------------~sVaFSPDG~~LaSgS~~S~-- 1615 (1922)
.|||||+.|+++++++|++||+.+ ++....... + .++.|+|||++|++++.+..
T Consensus 120 ~~SPdG~~la~~~~~~i~~~~~~~--g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~ 197 (723)
T 1xfd_A 120 GWGPKGQQLIFIFENNIYYCAHVG--KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV 197 (723)
T ss_dssp CBCSSTTCEEEEETTEEEEESSSS--SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred EECCCCCEEEEEECCeEEEEECCC--CceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc
Confidence 899999999998889999999987 555443322 1 57999999999998843210
Q ss_pred -----------------------------CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc---
Q 000177 1616 -----------------------------DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG--- 1663 (1922)
Q Consensus 1616 -----------------------------DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg--- 1663 (1922)
+..|++||+.+++....+..+... ..+......++|+|||+++++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~ 276 (723)
T 1xfd_A 198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP-RMREYYITMVKWATSTKVAVTWLNRA 276 (723)
T ss_dssp CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG-GGSSEEEEEEEESSSSEEEEEEEETT
T ss_pred ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC-CCccceeEEEEEeCCCeEEEEEEcCC
Confidence 227999999998865555411100 00122334499999999886432
Q ss_pred ------EEEEcCCCcceeeeccC-CCc-----eEEEEecCCCEEEEE-e----------EE--Ee-cCCCe--EEEEEcC
Q 000177 1664 ------ILWDRRNSVPVHRFDQF-TDH-----GGGGFHPAGNEVIIN-S----------EV--WD-LRKFR--LLRSVPS 1715 (1922)
Q Consensus 1664 ------rLWDlrtgk~I~kf~gh-~~~-----VsVaFSPdG~~LASG-S----------eI--WD-LrTgk--lL~tl~g 1715 (1922)
.+||+.++++...+..+ ... ..+.|+|||+.|+.. + +| || ..+++ +...+..
T Consensus 277 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 277 QNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred CCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 79999999876665433 222 268999999977754 2 24 55 23333 1444442
Q ss_pred -CCc-e-eEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec----cCCceEEEEEcCCCc
Q 000177 1716 -LDQ-T-TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP----VDRCVLDFATERTDS 1788 (1922)
Q Consensus 1716 -H~~-~-sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid----vkr~I~dLa~SPdds 1788 (1922)
+.. . .++|+|+|+.|+.....+. +....+..++.........+. ....+..++|+|+++
T Consensus 357 ~~~~~~~~~~~spdg~~l~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 357 GDWDVTKILAYDEKGNKIYFLSTEDL--------------PRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp SSSCEEEEEEEETTTTEEEEEESSSC--------------TTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred CCeEEEeeeEEcCCCCEEEEEEcCCC--------------CcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCC
Confidence 222 2 4799999999987643320 000111122211111111121 134578999999999
Q ss_pred eEEEEe
Q 000177 1789 FVGLIT 1794 (1922)
Q Consensus 1789 ~LAVVe 1794 (1922)
++++..
T Consensus 423 ~l~~~~ 428 (723)
T 1xfd_A 423 FFLLKC 428 (723)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 988764
No 141
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.70 E-value=3.1e-15 Score=172.46 Aligned_cols=229 Identities=10% Similarity=0.151 Sum_probs=175.3
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCC---------eeEEEeeecCC
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAP---------VTLVQSHLSGE 1564 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~---------VtsLq~afSpD 1564 (1922)
...++.++.+... ..+..++|+|+|++++ ++..++.|.+||..+++.+..+..+... +.++ .|+|+
T Consensus 76 ~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~d 151 (353)
T 3vgz_A 76 PVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPREL--VADDA 151 (353)
T ss_dssp TTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEE--EEETT
T ss_pred CCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceE--EECCC
Confidence 3455666666543 3477899999999655 5556799999999999988888655432 6778 88999
Q ss_pred CcEEEEe---cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1565 TQLLLSS---SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1565 G~lLaSS---sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
+++++.+ .++.|.+||..+ ++.+..+.. ..+++|+|++++++++ ..++.|.+||+.+++.+..+...
T Consensus 152 g~~l~~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~~~i~~~d~~~~~~~~~~~~~- 225 (353)
T 3vgz_A 152 TNTVYISGIGKESVIWVVDGGN--IKLKTAIQNTGKMSTGLALDSEGKRLYTT---NADGELITIDTADNKILSRKKLL- 225 (353)
T ss_dssp TTEEEEEEESSSCEEEEEETTT--TEEEEEECCCCTTCCCCEEETTTTEEEEE---CTTSEEEEEETTTTEEEEEEECC-
T ss_pred CCEEEEEecCCCceEEEEcCCC--CceEEEecCCCCccceEEECCCCCEEEEE---cCCCeEEEEECCCCeEEEEEEcC-
Confidence 9877663 378899999987 666766652 3789999999999888 66899999999999988777511
Q ss_pred ccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe------EEEecC
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLR 1705 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLr 1705 (1922)
.....+....++|+|+|++++..+ .+||+.+++.+..+.... ...+.|+|+|+++++++ .+||+.
T Consensus 226 --~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 226 --DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp --CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred --CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 111233344599999999766433 899999999888887543 35799999999766555 499999
Q ss_pred CCeEEEEEcCCCc-eeEEEccCCCEEEEEEcc
Q 000177 1706 KFRLLRSVPSLDQ-TTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1706 TgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~ 1736 (1922)
+++.+..+..... ..++|+|+|++|+.+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 303 SYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 9999998886554 899999999988887543
No 142
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.70 E-value=2.4e-15 Score=166.80 Aligned_cols=251 Identities=12% Similarity=0.047 Sum_probs=171.2
Q ss_pred EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc-----ceeEEE
Q 000177 1526 VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG-----CKAARF 1600 (1922)
Q Consensus 1526 SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g-----h~sVaF 1600 (1922)
+++.|++|++||+.+++.. .+..|...|.++ .|+|++++|+++.++.|++||+.+. +++...+.. +.+++|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~--~~spdg~~l~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAP--NWSPDGKYLLLNSEGLLYRLSLAGD-PSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEE--EECTTSSEEEEEETTEEEEEESSSC-CSCEECCCTTCCCBCSCCEE
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEee--EECCCCCEEEEEcCCeEEEEeCCCC-CCceEeccccccccccceEE
Confidence 4568899999999887765 556689999999 8999999999988999999999751 233333322 367999
Q ss_pred cCCCCEEEEeecCC-CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ecc-----EEEEcCC-Cc
Q 000177 1601 SNSGNLFAALPTET-SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WNG-----ILWDRRN-SV 1672 (1922)
Q Consensus 1601 SPDG~~LaSgS~~S-~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sgg-----rLWDlrt-gk 1672 (1922)
+|++++|++++... ....|.+||+.+++. ..+. .......++|+|++++|+ +++ +||++.. +.
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~--------~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMT--------KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECC--------SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCce-EEee--------cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 99999999983211 134455555555543 3332 122345589999999887 333 7998653 33
Q ss_pred ceeeeccCCCce-EEEEecCCCEEEEEe------EEEecC-CCeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhh
Q 000177 1673 PVHRFDQFTDHG-GGGFHPAGNEVIINS------EVWDLR-KFRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1673 ~I~kf~gh~~~V-sVaFSPdG~~LASGS------eIWDLr-TgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
....+..+...+ ++.|+|+|++|+.++ +||++. .+..+..+..+.. ..+.|+|+|++|+++..+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~- 242 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD- 242 (297)
T ss_dssp CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS-
T ss_pred cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc-
Confidence 455666666666 899999999888665 599886 4566677776655 68999999999988754321100
Q ss_pred hhhcccccccCCcceEEEEecCCCce--eeee-ccCCceEEEEEcCCCceEEEEecCC
Q 000177 1743 SAVHTRRVKHPLFAAFRTVDAINYSD--IATI-PVDRCVLDFATERTDSFVGLITMDD 1797 (1922)
Q Consensus 1743 s~lh~rr~ksp~~ssFrt~Da~dys~--IaTi-dvkr~I~dLa~SPdds~LAVVe~dd 1797 (1922)
........+.+|+..+... +... .....+..++|+|++.+|+++..++
T Consensus 243 -------~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 243 -------HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -------CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -------ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 0000124567777655443 3332 2345688899999999998876443
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.69 E-value=4.2e-15 Score=169.85 Aligned_cols=227 Identities=15% Similarity=0.182 Sum_probs=154.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEEECC--CCCc--eeeeccCCCCeeEEEeeecCCCcEEEE-ec
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHT-KELKIFDSN--SSSP--LESCTSHQAPVTLVQSHLSGETQLLLS-SS 1572 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~D-GtIkIWDl~--tgk~--l~tL~gHss~VtsLq~afSpDG~lLaS-Ss 1572 (1922)
+.+..+ .|. ..+.+++|+|+|++|++++.+ +.|++|++. +++. +..+..+. .+..+ +|+|++++|++ +.
T Consensus 29 ~~~~~~-~~~-~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~dg~~l~~~~~ 103 (343)
T 1ri6_A 29 TLTQVV-DVP-GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHI--STDHQGQFVFVGSY 103 (343)
T ss_dssp EEEEEE-ECS-SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEE--EECTTSSEEEEEET
T ss_pred EEeeeE-ecC-CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEE--EEcCCCCEEEEEec
Confidence 334433 465 678999999999999998887 999999997 5553 34455444 78888 88999997765 44
Q ss_pred -CCcEEEeccCCC-CCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-CceeeeeccccccccCCCCc
Q 000177 1573 -SQDVHLWNASSI-AGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQLEAKLSDTSVNLTGRGHA 1646 (1922)
Q Consensus 1573 -DgtVkLWDl~t~-~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~ 1646 (1922)
++.|.+||+... ....+..+.. ..+++|+|+++++++++ ..++.|++||+.+ ++...... ... ....+..
T Consensus 104 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~~~~-~~~-~~~~~~~ 179 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA--LKQDRICLFTVSDDGHLVAQDP-AEV-TTVEGAG 179 (343)
T ss_dssp TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEE-EEE-ECSTTCC
T ss_pred CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEec--CCCCEEEEEEecCCCceeeecc-ccc-ccCCCCC
Confidence 889999999420 0233444433 47899999999888772 3679999999987 65432210 000 0011233
Q ss_pred ceEEEEcCCCCeEe-ecc-----EEEEcCC--Ccc--eeeeccC----C--Cce-EEEEecCCCEEEEEe------EEEe
Q 000177 1647 YSQIHFSPSDTMLL-WNG-----ILWDRRN--SVP--VHRFDQF----T--DHG-GGGFHPAGNEVIINS------EVWD 1703 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLa-Sgg-----rLWDlrt--gk~--I~kf~gh----~--~~V-sVaFSPdG~~LASGS------eIWD 1703 (1922)
...++|+|++++++ ++. .+||+.. ++. +..+... . ..+ .++|+|+|++|+++. .+||
T Consensus 180 ~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d 259 (343)
T 1ri6_A 180 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259 (343)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEE
Confidence 44599999999665 332 8999953 433 2233211 1 123 799999999887544 4999
Q ss_pred cC----CCeEEEEEcCCC-ceeEEEccCCCEEEEEE
Q 000177 1704 LR----KFRLLRSVPSLD-QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1704 Lr----TgklL~tl~gH~-~~sVaFSPdG~~LaSgs 1734 (1922)
+. +.+.+..+..+. ...++|+|+|++|+++.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 295 (343)
T 1ri6_A 260 VSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG 295 (343)
T ss_dssp ECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred EcCCCCceEEeeeecCCCccceEEECCCCCEEEEec
Confidence 98 345666666443 37999999999999884
No 144
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.68 E-value=5.8e-15 Score=168.71 Aligned_cols=254 Identities=11% Similarity=0.155 Sum_probs=166.6
Q ss_pred EEEEEeCCCcEEEEECCC-CCce-eeeccCCCCeeEEEeeecCCCcEEEEe-c-CCcEEEeccCCCCCC--cceEec---
Q 000177 1523 HIAVGSHTKELKIFDSNS-SSPL-ESCTSHQAPVTLVQSHLSGETQLLLSS-S-SQDVHLWNASSIAGG--PMHSFE--- 1593 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~t-gk~l-~tL~gHss~VtsLq~afSpDG~lLaSS-s-DgtVkLWDl~t~~gk--~l~tf~--- 1593 (1922)
++++++.|+.|++|++.. ++.. .....|...+.++ +|+|++++|+++ . ++.|.+|++....+. .+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPM--VVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCE--EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceE--EECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 444557899999999963 3321 2224577788999 889999977774 4 489999999721133 233333
Q ss_pred cceeEEEcCCCCEEEEeecCCCCCeEEEEECC---CCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------E
Q 000177 1594 GCKAARFSNSGNLFAALPTETSDRGILLYDIQ---TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------I 1664 (1922)
Q Consensus 1594 gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr---Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------r 1664 (1922)
....++|+|+++++++++ ..++.|.+||+. +++.+..+. .......++|+|+|+++++++ .
T Consensus 85 ~~~~~~~s~dg~~l~~~~--~~~~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~s~dg~~l~~~~~~~~~v~ 154 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGS--YNAGNVSVTRLEDGLPVGVVDVVE--------GLDGCHSANISPDNRTLWVPALKQDRIC 154 (343)
T ss_dssp CCSEEEECTTSSEEEEEE--TTTTEEEEEEEETTEEEEEEEEEC--------CCTTBCCCEECTTSSEEEEEEGGGTEEE
T ss_pred CCcEEEEcCCCCEEEEEe--cCCCeEEEEECCCCcccccccccc--------CCCCceEEEECCCCCEEEEecCCCCEEE
Confidence 247899999999887662 457899999994 444444443 122344489999998776543 8
Q ss_pred EEEcCC-Cccee----eeccCC-Cce-EEEEecCCCEEEEEe------EEEecCC--CeE--EEEEc----CCC----ce
Q 000177 1665 LWDRRN-SVPVH----RFDQFT-DHG-GGGFHPAGNEVIINS------EVWDLRK--FRL--LRSVP----SLD----QT 1719 (1922)
Q Consensus 1665 LWDlrt-gk~I~----kf~gh~-~~V-sVaFSPdG~~LASGS------eIWDLrT--gkl--L~tl~----gH~----~~ 1719 (1922)
+||+.+ ++... .+..+. ..+ .++|+|+|+++++++ .+|++.. ++. +..+. ++. ..
T Consensus 155 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 155 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred EEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 999987 65432 222222 233 899999999876654 4999953 432 33333 111 14
Q ss_pred eEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC----CCceeeeeccCCceEEEEEcCCCceEEEEec
Q 000177 1720 TITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI----NYSDIATIPVDRCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1720 sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~----dys~IaTidvkr~I~dLa~SPdds~LAVVe~ 1795 (1922)
.++|+|+|++|+++...+ ..+.+|+.. ....+..+.....+..++|+|+++++.+...
T Consensus 235 ~i~~s~dg~~l~v~~~~~------------------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTA------------------SLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp EEEECTTSSEEEEEETTT------------------TEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred ceEECCCCCEEEEEecCC------------------CEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC
Confidence 799999999998764222 234555543 3445555555555889999999998887642
Q ss_pred CCCCCccceEEEEEec
Q 000177 1796 DDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1796 dds~d~dSsVRLyEVG 1811 (1922)
.+..+.+|++.
T Consensus 297 -----~~~~v~v~~~d 307 (343)
T 1ri6_A 297 -----KSHHISVYEIV 307 (343)
T ss_dssp -----TTCEEEEEEEE
T ss_pred -----CCCeEEEEEEc
Confidence 23678888663
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.67 E-value=5.5e-15 Score=168.52 Aligned_cols=243 Identities=13% Similarity=0.091 Sum_probs=175.5
Q ss_pred ecCceeeEEecC-CCCC-CEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeecc-C----CCCeeEEEeeecCCCc
Q 000177 1495 YSRFRPWRTCRD-DAGA-LLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTS-H----QAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1495 ~srfrpirtLrg-H~d~-~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~g-H----ss~VtsLq~afSpDG~ 1566 (1922)
...++.++.+.. +. . .+.+++|+|+|+++ ++++.++.|.+||+.+++.+..+.. + ...+..+ .|+|+|+
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~dg~ 94 (337)
T 1pby_B 18 TEKMAVDKVITIADA-GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGA--ALSPDGK 94 (337)
T ss_dssp TTTTEEEEEEECTTC-TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCE--EECTTSS
T ss_pred CCCCcEEEEEEcCCC-CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccce--EECCCCC
Confidence 445566666653 32 2 47899999999866 5566688999999999988877642 2 2257788 8899998
Q ss_pred EEEEe-------------cCCcEEEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCcee
Q 000177 1567 LLLSS-------------SSQDVHLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1567 lLaSS-------------sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
+|+++ .++.|.+||+.+ ++.+..+.. ..+++|+|++++++++ ++.|.+||+.+++.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 95 TLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFEAPRQITMLAWARDGSKLYGL-----GRDLHVMDPEAGTLV 167 (337)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEECCSSCCCEEECTTSSCEEEE-----SSSEEEEETTTTEEE
T ss_pred EEEEEecccccccccccccCceEEEEECCC--CcEEEEEeCCCCcceeEECCCCCEEEEe-----CCeEEEEECCCCcEe
Confidence 88775 479999999987 666655542 4779999999988886 367999999999887
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEeecc-----------------------------EEEEcCCCcce-eeeccC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----------------------------ILWDRRNSVPV-HRFDQF 1680 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----------------------------rLWDlrtgk~I-~kf~gh 1680 (1922)
..+.. +.....+.|+|+|..++..+ .+||+.+++.. ..+..+
T Consensus 168 ~~~~~--------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 168 EDKPI--------QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp EEECS--------TTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred eeeec--------cccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 77651 11011237889888665432 58999888764 223334
Q ss_pred CCce-EEEEecCCCEEEEEe---EEEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCc
Q 000177 1681 TDHG-GGGFHPAGNEVIINS---EVWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLF 1755 (1922)
Q Consensus 1681 ~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ 1755 (1922)
...+ ++.|+|+|++++++. .+||+.+++.+..+.... ..+++|+|+|++|+++.. .
T Consensus 240 ~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------------------~ 300 (337)
T 1pby_B 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA-------------------L 300 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB-------------------S
T ss_pred CCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC-------------------C
Confidence 4344 899999999988876 499999999988887443 389999999999998731 2
Q ss_pred ceEEEEecCCCceeeeecc
Q 000177 1756 AAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1756 ssFrt~Da~dys~IaTidv 1774 (1922)
..+.+|+..+.+.+..+..
T Consensus 301 ~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 301 GDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SEEEEEETTTCCEEEEEEC
T ss_pred CcEEEEECcCCcEEEEEEc
Confidence 3466777666665555443
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.67 E-value=3.7e-15 Score=171.12 Aligned_cols=233 Identities=10% Similarity=0.067 Sum_probs=167.5
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCC-CCeeEEEeeecCCCcEEE-Ee-cCCcEEEeccCCCCCCcce
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQ-APVTLVQSHLSGETQLLL-SS-SSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHs-s~VtsLq~afSpDG~lLa-SS-sDgtVkLWDl~t~~gk~l~ 1590 (1922)
.++|++++.++++++.+++|++||+.+++.+.++..+. ..+..+ .|+|++++++ ++ .++.|.+||+.+ ++.+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~--~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~~~ 79 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTA--MMAPDNRTAYVLNNHYGDIYGIDLDT--CKNTF 79 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEE--EECTTSSEEEEEETTTTEEEEEETTT--TEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCcee--EECCCCCEEEEEeCCCCcEEEEeCCC--CcEEE
Confidence 45788899999999999999999999999888886543 257788 7899998654 44 488999999987 66655
Q ss_pred Eecc----------ceeEEEcCCCCEEEEeecC---------CCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1591 SFEG----------CKAARFSNSGNLFAALPTE---------TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1591 tf~g----------h~sVaFSPDG~~LaSgS~~---------S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
.+.. ...++|+|+|+++++++.+ ..++.|.+||+.+++....+.. .. .......++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~---~~~~~~~~~ 154 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT--FP---MPRQVYLMR 154 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE--EE---CCSSCCCEE
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee--cc---CCCccccee
Confidence 5432 4789999999999988311 1138999999998654332210 00 112234488
Q ss_pred EcCCCCeEeecc--EEEEcCCCcceeeeccCC------------------------------------------------
Q 000177 1652 FSPSDTMLLWNG--ILWDRRNSVPVHRFDQFT------------------------------------------------ 1681 (1922)
Q Consensus 1652 FSPdG~lLaSgg--rLWDlrtgk~I~kf~gh~------------------------------------------------ 1681 (1922)
|+|+|++++.+. .+||+.+++.+..+....
T Consensus 155 ~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 155 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp ECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred ECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999999555444 899999988776664331
Q ss_pred --------------------Cce-EEEEec-CCCEEEEEe---EEEecCCCeEEEEEcCC-CceeEEEccCCCEEEEEEc
Q 000177 1682 --------------------DHG-GGGFHP-AGNEVIINS---EVWDLRKFRLLRSVPSL-DQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1682 --------------------~~V-sVaFSP-dG~~LASGS---eIWDLrTgklL~tl~gH-~~~sVaFSPdG~~LaSgs~ 1735 (1922)
... +++|+| +|++++++. .+||+.+++.+..+... ...+++|+|+|++|+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~- 313 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGG- 313 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEES-
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEEcCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEec-
Confidence 011 567779 999888874 48999999998888643 347999999999888862
Q ss_pred cCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc
Q 000177 1736 RNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1736 ~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
....+.+||..+.+.+..+..
T Consensus 314 ------------------~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 314 ------------------TFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp ------------------BSSEEEEEETTTTEEEEEEEC
T ss_pred ------------------CCCeEEEEeccccceeeeeec
Confidence 123467777776666665544
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.64 E-value=9.3e-15 Score=183.31 Aligned_cols=243 Identities=9% Similarity=0.004 Sum_probs=166.0
Q ss_pred CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceeeeccCC-CCeeEEEeeecCCCcEEEEec----CCcEEEeccCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSH-TKELKIFDSNSSSPLESCTSHQ-APVTLVQSHLSGETQLLLSSS----SQDVHLWNASS 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~l~tL~gHs-s~VtsLq~afSpDG~lLaSSs----DgtVkLWDl~t 1583 (1922)
.+|++++|+|||++||+++. ||+++||++.+++. ..+..|. ..|..+ .|+|| +++++++ +....||.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~--~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDP--HYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEE--CTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-Eeeecccccccccc--cCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 67999999999999999887 99999999966554 4454454 689999 88999 7777643 34556665532
Q ss_pred --CCCC-cceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1584 --IAGG-PMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1584 --~~gk-~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
.... .+....++...+|+|+|+.++..+. ..++ +.+||+.+++...... +....++|+|||++|+
T Consensus 98 ~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~-~~~~-~~l~d~~~g~~~~l~~----------~~~~~~~~spDG~~la 165 (582)
T 3o4h_A 98 SRPGEEQRLEAVKPMRILSGVDTGEAVVFTGA-TEDR-VALYALDGGGLRELAR----------LPGFGFVSDIRGDLIA 165 (582)
T ss_dssp TSTTCCEECTTSCSBEEEEEEECSSCEEEEEE-CSSC-EEEEEEETTEEEEEEE----------ESSCEEEEEEETTEEE
T ss_pred cCCCccccccCCCCceeeeeCCCCCeEEEEec-CCCC-ceEEEccCCcEEEeec----------CCCceEEECCCCCEEE
Confidence 1111 1222334567789999864333211 3444 5599999987655443 2226699999999999
Q ss_pred ecc---------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-------EEEecCCCeEEEEEcCCCc--eeE
Q 000177 1661 WNG---------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-------EVWDLRKFRLLRSVPSLDQ--TTI 1721 (1922)
Q Consensus 1661 Sgg---------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-------eIWDLrTgklL~tl~gH~~--~sV 1721 (1922)
+.+ ++||+.+++.. .+..+...+ .++|||||++|+++. .+||+.+++.. .+.+|.. ..+
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~ 243 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSY 243 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHH
T ss_pred EEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhh
Confidence 544 78999888754 667777666 999999999999655 38999998877 6666654 456
Q ss_pred E--------EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEE
Q 000177 1722 T--------FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLI 1793 (1922)
Q Consensus 1722 a--------FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVV 1793 (1922)
. |+|+|.+++++..+.. .++|+. .+.+. .....+..++++ +++.++..
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~-------------------~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~ 299 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGR-------------------SAVFID--GERVE--APQGNHGRVVLW-RGKLVTSH 299 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTE-------------------EEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEE
T ss_pred hhccccceeEcCCCcEEEEEEcCCc-------------------EEEEEE--CCeec--cCCCceEEEEec-CCEEEEEE
Confidence 6 9999977777643332 222322 11111 122457788999 78777654
Q ss_pred e
Q 000177 1794 T 1794 (1922)
Q Consensus 1794 e 1794 (1922)
.
T Consensus 300 s 300 (582)
T 3o4h_A 300 T 300 (582)
T ss_dssp E
T ss_pred c
Confidence 3
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.62 E-value=3.6e-14 Score=191.20 Aligned_cols=266 Identities=13% Similarity=0.122 Sum_probs=194.1
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNS-SSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVH 1577 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~t-gk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVk 1577 (1922)
...+.+.+|. ..+.++.|+++ .++++++.|++++||.+.. +.....+..|. .+..+ .|+|||++|+++.++.|+
T Consensus 194 ~~~~~l~~~~-~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~--~~SpDG~~la~~~~~~i~ 268 (1045)
T 1k32_A 194 GAFKKIVDMS-THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPR--HLNTDGRRILFSKGGSIY 268 (1045)
T ss_dssp TEEEEEECCS-SCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEE--EEEESSSCEEEEETTEEE
T ss_pred CCeEECcCCC-CcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cccee--eEcCCCCEEEEEeCCEEE
Confidence 3455568899 99999999998 7778888999999998754 45556676665 46677 789999999998899999
Q ss_pred EeccCCCCCCcceEecc---------------ceeEEEc-CCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1578 LWNASSIAGGPMHSFEG---------------CKAARFS-NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1578 LWDl~t~~gk~l~tf~g---------------h~sVaFS-PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
+||+.. ..+..+.+ +.+++|+ |+|++|+++ + ++.|++||+.++.... +.
T Consensus 269 ~~d~~~---~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~---~-~~~i~~~~~~~~~~~~-~~------- 333 (1045)
T 1k32_A 269 IFNPDT---EKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFV---S-RGQAFIQDVSGTYVLK-VP------- 333 (1045)
T ss_dssp EECTTT---CCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEE---E-TTEEEEECTTSSBEEE-CS-------
T ss_pred EecCCc---eEeeeeccCcccccccccccccccceeeecCCCCCEEEEE---E-cCEEEEEcCCCCceEE-cc-------
Confidence 999843 33434443 5789999 999999987 3 6889999998876543 32
Q ss_pred CCCC-cceEEEEcCCCCeEeecc-----E-EEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCe
Q 000177 1642 GRGH-AYSQIHFSPSDTMLLWNG-----I-LWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFR 1708 (1922)
Q Consensus 1642 ~~gh-~~~vVaFSPdG~lLaSgg-----r-LWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgk 1708 (1922)
.+.. ....++|+ +|+.|++.+ . +||+.+++.. .+.++...+ .++|+|+|++|++++ .+||+.+++
T Consensus 334 ~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~ 411 (1045)
T 1k32_A 334 EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 411 (1045)
T ss_dssp CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence 0111 33448999 998888755 4 5688776544 444665666 899999999999887 499999999
Q ss_pred EEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCC
Q 000177 1709 LLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1709 lL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPd 1786 (1922)
....+.+|.. ..++|||+|++|+++.....-.. .......+++||..+............+..++|+|+
T Consensus 412 ~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~---------~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 412 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGET---------DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTT---------CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred eEEeccCCCCCccceEECCCCCeEEEEecCccccc---------cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCC
Confidence 8887766655 79999999999987743210000 001234677888766553322333456888999999
Q ss_pred CceEEEEec
Q 000177 1787 DSFVGLITM 1795 (1922)
Q Consensus 1787 ds~LAVVe~ 1795 (1922)
|+++++...
T Consensus 483 G~~l~~~s~ 491 (1045)
T 1k32_A 483 SKNLYYLSY 491 (1045)
T ss_dssp SCEEEEEES
T ss_pred CCEEEEEec
Confidence 999987753
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.61 E-value=4.4e-15 Score=190.52 Aligned_cols=271 Identities=11% Similarity=0.077 Sum_probs=176.1
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCC---CeeEEEeeecCCCcEEEEec----------CCcEEEec
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQA---PVTLVQSHLSGETQLLLSSS----------SQDVHLWN 1580 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss---~VtsLq~afSpDG~lLaSSs----------DgtVkLWD 1580 (1922)
.++|+|||+++++ +.|++|++||+.+++....+.+|.. .|.++ +|||||++|++++ +++|++||
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNY--GLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEE--EECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeE--EECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 6799999965555 4699999999999998777776644 48888 8999999998753 58999999
Q ss_pred cCCCCCCcc--eEe-ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-----------
Q 000177 1581 ASSIAGGPM--HSF-EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA----------- 1646 (1922)
Q Consensus 1581 l~t~~gk~l--~tf-~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~----------- 1646 (1922)
+.+ ++.+ ..+ .....++|||||++|+++ .++.|++||+.+++......+........|+.
T Consensus 97 ~~~--g~~~~~~~l~~~~~~~~~SPDG~~la~~----~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~ 170 (719)
T 1z68_A 97 LSN--GEFVRGNELPRPIQYLCWSPVGSKLAYV----YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLAT 170 (719)
T ss_dssp TTT--TEECCSSCCCSSBCCEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCS
T ss_pred CCC--CccccceecCcccccceECCCCCEEEEE----ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccC
Confidence 987 5441 223 346889999999999997 36799999999887754332110000000111
Q ss_pred ceEEEEcCCCCeEeecc---------------------------------------EEEEcCCCcce--------eeecc
Q 000177 1647 YSQIHFSPSDTMLLWNG---------------------------------------ILWDRRNSVPV--------HRFDQ 1679 (1922)
Q Consensus 1647 ~~vVaFSPdG~lLaSgg---------------------------------------rLWDlrtgk~I--------~kf~g 1679 (1922)
...++|||||++|++.+ ++||+.+++.+ ..+.+
T Consensus 171 ~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 250 (719)
T 1z68_A 171 KYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS 250 (719)
T ss_dssp SCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred cccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence 13599999999998543 48999887653 22345
Q ss_pred CCCce-EEEEecCCCEEEEEe---------EEEe----cCCCeEEEEE----cCCCc--e-----eEEEccCCCEEEEE-
Q 000177 1680 FTDHG-GGGFHPAGNEVIINS---------EVWD----LRKFRLLRSV----PSLDQ--T-----TITFNARGDVIYAI- 1733 (1922)
Q Consensus 1680 h~~~V-sVaFSPdG~~LASGS---------eIWD----LrTgklL~tl----~gH~~--~-----sVaFSPdG~~LaSg- 1733 (1922)
+...+ +++|+|||+++++.. .+|| +.++++...+ .+|.. . .+.|+|+|+.|+..
T Consensus 251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence 66666 899999988777743 2678 7777655444 24443 3 78999999977653
Q ss_pred EccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1734 LRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1734 s~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
...+. ...+..++..+............+..+.+. ++..++...... .......++|.+.
T Consensus 331 ~~~~g----------------~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~-~~~~~~~~l~~~~ 390 (719)
T 1z68_A 331 SDKDG----------------YKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEF-EEYPGRRNIYRIS 390 (719)
T ss_dssp ECTTS----------------CEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCG-GGCTTCBEEEEEE
T ss_pred EccCC----------------ceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecC-CCCCceEEEEEEe
Confidence 22221 112344443332221111223346666666 777777665330 0112456777764
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.61 E-value=5.4e-14 Score=163.59 Aligned_cols=218 Identities=9% Similarity=0.172 Sum_probs=148.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCC--ceeeeccCCCCeeEEEeeecCCCcEEEE-e-cCCcEEE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSH---TKELKIFDSNSSS--PLESCTSHQAPVTLVQSHLSGETQLLLS-S-SSQDVHL 1578 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~---DGtIkIWDl~tgk--~l~tL~gHss~VtsLq~afSpDG~lLaS-S-sDgtVkL 1578 (1922)
.+. ..+..++|+|||+ |++++. ++.|++|++.+++ .+..+..|...+..+ +|+|||++|++ + .+++|.+
T Consensus 37 ~~~-~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~--a~spdg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 37 AAT-QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV--AVDEARQLVYSANYHKGTAEV 112 (347)
T ss_dssp EEC-SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE--EEETTTTEEEEEETTTTEEEE
T ss_pred ecc-CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE--EECCCCCEEEEEeCCCCEEEE
Confidence 444 5678899999999 555554 6899999997765 344555677888999 89999997777 4 4789999
Q ss_pred eccCCCCCC--cceEecc-------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECC-CCceeeeeccccccccC
Q 000177 1579 WNASSIAGG--PMHSFEG-------------CKAARFSNSGNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1579 WDl~t~~gk--~l~tf~g-------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~ 1642 (1922)
|++.. .+. .+..+.. ..+++|+|+|+.+++. ..++.|++||+. +++...... . ...
T Consensus 113 ~~~~~-~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~---~~~~~v~~~~~~~~g~~~~~~~-~---~~~ 184 (347)
T 3hfq_A 113 MKIAA-DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVID---LGSDKVYVYNVSDAGQLSEQSV-L---TME 184 (347)
T ss_dssp EEECT-TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEE---TTTTEEEEEEECTTSCEEEEEE-E---ECC
T ss_pred EEeCC-CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEe---CCCCEEEEEEECCCCcEEEeee-E---EcC
Confidence 99963 122 2222211 3569999999955554 667899999998 554332111 0 001
Q ss_pred CCCcceEEEEcCCCCeEeecc------EEEEcCC--Ccc--eeeeccCC------Cce-EEEEecCCCEEEEEe------
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG------ILWDRRN--SVP--VHRFDQFT------DHG-GGGFHPAGNEVIINS------ 1699 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg------rLWDlrt--gk~--I~kf~gh~------~~V-sVaFSPdG~~LASGS------ 1699 (1922)
.+.....++|+|+|++++..+ .+|++.. ++. +..+.... ... .++|+|+|++|++..
T Consensus 185 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v 264 (347)
T 3hfq_A 185 AGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL 264 (347)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEE
T ss_pred CCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEE
Confidence 122334499999999666432 7999874 442 33333322 223 799999999885544
Q ss_pred EEEecC---CCeEEEEEcCCCc--eeEEEccCCCEEEEEEc
Q 000177 1700 EVWDLR---KFRLLRSVPSLDQ--TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1700 eIWDLr---TgklL~tl~gH~~--~sVaFSPdG~~LaSgs~ 1735 (1922)
.+|++. +.+.+..+..+.. ..++|+|+|++|+++..
T Consensus 265 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 265 AVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred EEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 499997 3466667765433 79999999999998853
No 151
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.58 E-value=7.2e-14 Score=178.65 Aligned_cols=254 Identities=12% Similarity=0.108 Sum_probs=162.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce-eeeccCC-----------------CCeeEEEeeecCCCcEEEEecC
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL-ESCTSHQ-----------------APVTLVQSHLSGETQLLLSSSS 1573 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l-~tL~gHs-----------------s~VtsLq~afSpDG~lLaSSsD 1573 (1922)
+..+.|+ |+.+++++.|+ | +||+.+++.+ ..+..|. ..|.++ +|||| ..++.+.+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~--~~spd-~~~~~~~~ 100 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRT--LDAGR-GLVVLFTQ 100 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEE--EETTT-TEEEEEET
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeE--EECCC-CeEEEEEC
Confidence 5567788 67788888888 8 9999999873 4443332 568999 89999 66666677
Q ss_pred CcEEEeccCCCCCCcceEec---cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-----Cceeeeeccccccc-----
Q 000177 1574 QDVHLWNASSIAGGPMHSFE---GCKAARFSNSGNLFAALPTETSDRGILLYDIQT-----YQLEAKLSDTSVNL----- 1640 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~---gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-----gk~i~tL~d~s~~~----- 1640 (1922)
++|++||+.+ +++..... ...+++|+|||++|+++ .|+.|++||+.+ ++............
T Consensus 101 ~~i~~~d~~~--~~~~~l~~~~~~~~~~~~SpdG~~la~~----~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 174 (706)
T 2z3z_A 101 GGLVGFDMLA--RKVTYLFDTNEETASLDFSPVGDRVAYV----RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA 174 (706)
T ss_dssp TEEEEEETTT--TEEEEEECCTTCCTTCEECTTSSEEEEE----ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC
T ss_pred CEEEEEECCC--CceEEccCCcccccCCcCCCCCCEEEEE----ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc
Confidence 9999999987 54433322 24779999999999985 468999999998 77654332100000
Q ss_pred --cCCCCcceEEEEcCCCCeEeec----------------------------------c----EEEEcCCCcceeeec--
Q 000177 1641 --TGRGHAYSQIHFSPSDTMLLWN----------------------------------G----ILWDRRNSVPVHRFD-- 1678 (1922)
Q Consensus 1641 --~~~gh~~~vVaFSPdG~lLaSg----------------------------------g----rLWDlrtgk~I~kf~-- 1678 (1922)
..+......+.|+|||++|++. . .+||+.+++......
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 254 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE 254 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence 0000002349999999988854 2 799999887654442
Q ss_pred cCCCce-EEEEecCCCEEEEEe----------EEEecCCCeEEEEEc--CCCc-----eeEEEcc--CCCEEEEEEccCc
Q 000177 1679 QFTDHG-GGGFHPAGNEVIINS----------EVWDLRKFRLLRSVP--SLDQ-----TTITFNA--RGDVIYAILRRNL 1738 (1922)
Q Consensus 1679 gh~~~V-sVaFSPdG~~LASGS----------eIWDLrTgklL~tl~--gH~~-----~sVaFSP--dG~~LaSgs~~d~ 1738 (1922)
.+...+ ++.|+|||++|++++ .+||+.+++.+..+. .+.. ..+.|+| +|++++++..+..
T Consensus 255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 344555 899999999998855 389999984443332 1221 4689999 9998887733221
Q ss_pred hhhhhhhcccccccCCcceEEEEecCCCceeeeecc-CCceEE-EEEcCCCceEEEEecC
Q 000177 1739 EDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV-DRCVLD-FATERTDSFVGLITMD 1796 (1922)
Q Consensus 1739 ~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv-kr~I~d-La~SPdds~LAVVe~d 1796 (1922)
. .+..++. +...+..+.. ...+.. ++|+|++..+++...+
T Consensus 335 ~-----------------~l~~~~~-~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 335 N-----------------HLYLYDT-TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp C-----------------EEEEEET-TSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred c-----------------EEEEEEC-CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 1 1122221 2222333322 334666 7999999988877533
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.58 E-value=1.5e-13 Score=161.39 Aligned_cols=274 Identities=10% Similarity=0.046 Sum_probs=173.4
Q ss_pred CceeeEEecCCCCCCEEE-----EEEcCCCCEEEEEeC-CC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEE
Q 000177 1497 RFRPWRTCRDDAGALLTC-----ITFLGDSSHIAVGSH-TK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLL 1568 (1922)
Q Consensus 1497 rfrpirtLrgH~d~~Vt~-----LaFSPDG~lLASGS~-DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lL 1568 (1922)
....+..+..|. ..... .+|||||++|+.++. +| .|.+||+.+++......+|...+..+ .|+|||+.|
T Consensus 19 ~g~~~~~lt~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~--~~spdg~~l 95 (388)
T 3pe7_A 19 TGAQVTRLTPPD-VTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGG--FLSPDDDAL 95 (388)
T ss_dssp TCCEEEECSCTT-SCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSC--EECTTSSEE
T ss_pred CCcceEEecCCc-ccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccce--EEcCCCCEE
Confidence 345566677776 55665 889999999999887 67 48888999888877777777777667 789999988
Q ss_pred EEe-cCCcEEEeccCCCCCCcceEecc--c--ee--EEEcCCCCEEEEeec-------------------CCCCCeEEEE
Q 000177 1569 LSS-SSQDVHLWNASSIAGGPMHSFEG--C--KA--ARFSNSGNLFAALPT-------------------ETSDRGILLY 1622 (1922)
Q Consensus 1569 aSS-sDgtVkLWDl~t~~gk~l~tf~g--h--~s--VaFSPDG~~LaSgS~-------------------~S~DgtIrIW 1622 (1922)
+.+ .++.|++||+.+ ++....+.. . .. ..++|++++++.... ...+..|.+|
T Consensus 96 ~~~~~~~~l~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLAT--LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEETTTEEEEEETTT--CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEeCCCeEEEEECCC--CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 885 578999999987 554433322 1 12 335899998874310 1345789999
Q ss_pred ECCCCceeeeeccccccccCCCCcceEEEEcC-CCCeEeecc---------EEE--EcCCCcceeeeccCCC--ce-EEE
Q 000177 1623 DIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWNG---------ILW--DRRNSVPVHRFDQFTD--HG-GGG 1687 (1922)
Q Consensus 1623 DlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSgg---------rLW--Dlrtgk~I~kf~gh~~--~V-sVa 1687 (1922)
|+.+++...... .......+.|+| +|+.|+... .|| |+..+ .+..+..+.. .+ .+.
T Consensus 174 d~~~g~~~~l~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 174 DLKTGESTVILQ--------ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-NMRKVKTHAEGESCTHEF 244 (388)
T ss_dssp ETTTCCEEEEEE--------ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-CCEESCCCCTTEEEEEEE
T ss_pred ECCCCceEEeec--------CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-ceEEeeeCCCCcccccce
Confidence 999987654433 122344589999 998877322 444 54444 3444544442 34 789
Q ss_pred EecCCCEEEEEe----------EEEecCCCeE--EEEEcCCC-----ceeEEEccCCCEEEEEEccCchhhhhhhccccc
Q 000177 1688 FHPAGNEVIINS----------EVWDLRKFRL--LRSVPSLD-----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRV 1750 (1922)
Q Consensus 1688 FSPdG~~LASGS----------eIWDLrTgkl--L~tl~gH~-----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ 1750 (1922)
|+|||+.|+..+ .+||+.+++. +..++++. ...+.|+|+|+.|+....+... .
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~----------~ 314 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSG----------Y 314 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--------------------
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccc----------c
Confidence 999999886644 2789988864 33444311 1234799999988865321000 0
Q ss_pred ccCCcceEEEEecCCCceeeeeccCC-----------ceEEEEEcCCCceEEEEe
Q 000177 1751 KHPLFAAFRTVDAINYSDIATIPVDR-----------CVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1751 ksp~~ssFrt~Da~dys~IaTidvkr-----------~I~dLa~SPdds~LAVVe 1794 (1922)
.......+.+++..+........... .+..++|+|+|+.|+...
T Consensus 315 ~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 315 KIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp --CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred ccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence 00022345666655433221111222 367889999999998775
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.57 E-value=7.5e-13 Score=153.98 Aligned_cols=261 Identities=11% Similarity=0.151 Sum_probs=160.2
Q ss_pred EEEEEe----CCCcEEEEECC--CCCcee-eeccCCCCeeEEEeeecCCCcEEEEec---CCcEEEeccCCCCCCcceEe
Q 000177 1523 HIAVGS----HTKELKIFDSN--SSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMHSF 1592 (1922)
Q Consensus 1523 lLASGS----~DGtIkIWDl~--tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSs---DgtVkLWDl~t~~gk~l~tf 1592 (1922)
.|++|+ .++.|.+|.++ +++... ....+...+..+ +|+|||++++++. ++.|++||+.....+.+..+
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~--a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~ 81 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYL--ALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTV 81 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCE--EECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceE--EEccCCeEEEEEecCCCceEEEEEecCCcEEEeeee
Confidence 455554 34567777664 454433 334456677788 8899999555553 58999999975211233332
Q ss_pred c----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cc--eeeeecccccc--ccCCCCcceEEEEcCCCCeEeecc
Q 000177 1593 E----GCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQ--LEAKLSDTSVN--LTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1593 ~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk--~i~tL~d~s~~--~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
. ....++|+|+|++|++++ ..++.|.+||+.. +. .+..+...... ..........++|+|+|++++++.
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~--~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSAN--YHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEE--TTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEe--CCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC
Confidence 2 237899999999888872 3679999999963 32 22222200000 000111233499999999666543
Q ss_pred -----EEEEcC-CCcce--eeeccCC--CceEEEEecCCCEEEEEe------EEEecCC--CeE--EEEEcCCC------
Q 000177 1664 -----ILWDRR-NSVPV--HRFDQFT--DHGGGGFHPAGNEVIINS------EVWDLRK--FRL--LRSVPSLD------ 1717 (1922)
Q Consensus 1664 -----rLWDlr-tgk~I--~kf~gh~--~~VsVaFSPdG~~LASGS------eIWDLrT--gkl--L~tl~gH~------ 1717 (1922)
.+||+. +++.. ..+.... ....++|+|+|+++++.+ .+|++.. ++. +..+....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 889998 55432 2222222 233899999999777754 4898874 543 33333222
Q ss_pred --ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC---CCceeeeecc-CCceEEEEEcCCCceEE
Q 000177 1718 --QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI---NYSDIATIPV-DRCVLDFATERTDSFVG 1791 (1922)
Q Consensus 1718 --~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~---dys~IaTidv-kr~I~dLa~SPdds~LA 1791 (1922)
...++|+|+|++|+++...+ ..+.+|+.. ....+..+.. ...+..++|+|++++|+
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~~------------------~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRGY------------------NTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVV 301 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEETT------------------TEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEE
T ss_pred CcceeEEECCCCCEEEEEeCCC------------------CEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEE
Confidence 25799999999997763321 223444432 2334444444 34578999999999998
Q ss_pred EEecCCCCCccceEEEEEe
Q 000177 1792 LITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1792 VVe~dds~d~dSsVRLyEV 1810 (1922)
+...+. ..+.+|.+
T Consensus 302 v~~~~~-----~~v~v~~~ 315 (347)
T 3hfq_A 302 VVNQNT-----DNATLYAR 315 (347)
T ss_dssp EEETTT-----TEEEEEEE
T ss_pred EEEcCC-----CcEEEEEE
Confidence 875322 56888876
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.55 E-value=2.1e-12 Score=151.40 Aligned_cols=225 Identities=9% Similarity=0.137 Sum_probs=146.6
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCC--CCc--eeeeccCCCCeeEEEeeecCCCcEEEE
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHT----KELKIFDSNS--SSP--LESCTSHQAPVTLVQSHLSGETQLLLS 1570 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~D----GtIkIWDl~t--gk~--l~tL~gHss~VtsLq~afSpDG~lLaS 1570 (1922)
..+..+ |. ..+..++|+|||++|++++.+ +.|.+|++.. ++. +..+..+......+ ++ ++++|++
T Consensus 42 ~~~~~~--~~-~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~--~~--dg~~l~~ 114 (361)
T 3scy_A 42 LPLSDA--EV-ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYL--TT--NGKNIVT 114 (361)
T ss_dssp EEEEEE--EC-SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEE--EE--CSSEEEE
T ss_pred EEeecc--cC-CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEE--EE--CCCEEEE
Confidence 344444 55 678899999999999999986 8999999865 432 23344455666777 56 7776666
Q ss_pred e--cCCcEEEeccCCCCCCcceEe------cc------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-
Q 000177 1571 S--SSQDVHLWNASSIAGGPMHSF------EG------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL- 1629 (1922)
Q Consensus 1571 S--sDgtVkLWDl~t~~gk~l~tf------~g------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~- 1629 (1922)
+ .+++|.+|++.. ...+..+ .+ .++++|+|+|++++++. ..++.|++|++.....
T Consensus 115 ~~~~~~~v~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~v~v~~~~~~~~~ 190 (361)
T 3scy_A 115 ANYSGGSITVFPIGQ--DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD--LGTDQIHKFNINPNANA 190 (361)
T ss_dssp EETTTTEEEEEEBCT--TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTCCT
T ss_pred EECCCCEEEEEEeCC--CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe--CCCCEEEEEEEcCCCCc
Confidence 4 488999999975 2222111 11 15699999999776652 4578999999875442
Q ss_pred -----eeee-ccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcc--eeeeccC---CCce-EEEEecC
Q 000177 1630 -----EAKL-SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVP--VHRFDQF---TDHG-GGGFHPA 1691 (1922)
Q Consensus 1630 -----i~tL-~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~--I~kf~gh---~~~V-sVaFSPd 1691 (1922)
+... .... .....+.....++|+|+|++++..+ .+||+.+++. +..+... .... .++|+|+
T Consensus 191 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spd 269 (361)
T 3scy_A 191 DNKEKFLTKGTPEA-FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPD 269 (361)
T ss_dssp TTCCCCEEEEEEEE-EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTT
T ss_pred ccccceeecccccc-eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCC
Confidence 1110 0000 0001223334599999999766433 8999987754 3333322 2223 8999999
Q ss_pred CCEEEEEe-------EEEecC--CCe--EEEEEcC-CCceeEEEccCCCEEEEEEc
Q 000177 1692 GNEVIINS-------EVWDLR--KFR--LLRSVPS-LDQTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1692 G~~LASGS-------eIWDLr--Tgk--lL~tl~g-H~~~sVaFSPdG~~LaSgs~ 1735 (1922)
|++|+++. .+|++. +++ .+..+.. .....++|+|+|++|+++..
T Consensus 270 g~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~ 325 (361)
T 3scy_A 270 GKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACR 325 (361)
T ss_dssp SSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred CCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEEC
Confidence 99886643 399985 444 5555554 22379999999999998853
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.55 E-value=1e-13 Score=177.81 Aligned_cols=293 Identities=10% Similarity=0.016 Sum_probs=181.1
Q ss_pred eeeecCceeeEEecCCCCC---CEEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCCce--eeeccCCCCeeEE
Q 000177 1492 QFVYSRFRPWRTCRDDAGA---LLTCITFLGDSSHIAVGSH---------TKELKIFDSNSSSPL--ESCTSHQAPVTLV 1557 (1922)
Q Consensus 1492 ~fi~srfrpirtLrgH~d~---~Vt~LaFSPDG~lLASGS~---------DGtIkIWDl~tgk~l--~tL~gHss~VtsL 1557 (1922)
.+.....+....+.+|. . .|.+++|||||++|++++. +++|++||+.+++.+ ..+ ...+..+
T Consensus 40 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~ 115 (719)
T 1z68_A 40 LYNIETGQSYTILSNRT-MKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYL 115 (719)
T ss_dssp EEESSSCCEEEEECHHH-HHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCE
T ss_pred EEEcCCCcEEEEEcccc-ccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccccc
Confidence 33344556566665554 3 3899999999999999887 799999999988763 222 2568888
Q ss_pred EeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe-cc--------c-------------eeEEEcCCCCEEEEeecCC-
Q 000177 1558 QSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF-EG--------C-------------KAARFSNSGNLFAALPTET- 1614 (1922)
Q Consensus 1558 q~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf-~g--------h-------------~sVaFSPDG~~LaSgS~~S- 1614 (1922)
.|||||+.|+++.+++|++||+.+ +++.... .+ + .++.|+|||++|++++.+.
T Consensus 116 --~~SPDG~~la~~~~~~i~~~~~~~--g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~ 191 (719)
T 1z68_A 116 --CWSPVGSKLAYVYQNNIYLKQRPG--DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDT 191 (719)
T ss_dssp --EECSSTTCEEEEETTEEEEESSTT--SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECT
T ss_pred --eECCCCCEEEEEECCeEEEEeCCC--CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCC
Confidence 899999999998899999999986 4433221 11 1 4799999999999984321
Q ss_pred ------------------------------CCCeEEEEECCCCcee--eeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1615 ------------------------------SDRGILLYDIQTYQLE--AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1615 ------------------------------~DgtIrIWDlrTgk~i--~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
....|++||+.+++.. ..+..+. ....+.+....++|+||++++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~SpD~~~~~~~ 270 (719)
T 1z68_A 192 DIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA-MIASSDYYFSWLTWVTDERVCLQW 270 (719)
T ss_dssp TSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH-HHHTSCEEEEEEEESSSSEEEEEE
T ss_pred CCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc-cCCCCcceEEEeEEeCCCeEEEEE
Confidence 1127899999988753 1221000 001122334459999998877752
Q ss_pred c---------EEEE----cCCCcceeee----ccCCCce------EEEEecCCCEEEEE-e------E--EEecCCCeEE
Q 000177 1663 G---------ILWD----RRNSVPVHRF----DQFTDHG------GGGFHPAGNEVIIN-S------E--VWDLRKFRLL 1710 (1922)
Q Consensus 1663 g---------rLWD----lrtgk~I~kf----~gh~~~V------sVaFSPdG~~LASG-S------e--IWDLrTgklL 1710 (1922)
. .+|| +.++++...+ .++...+ .+.|+|||+.|+.. + + +||+.+++ .
T Consensus 271 ~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~ 349 (719)
T 1z68_A 271 LKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-A 349 (719)
T ss_dssp EESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-C
T ss_pred eccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-e
Confidence 2 6789 7777766555 3555443 57999999966542 2 2 66777666 3
Q ss_pred EEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc-eeeeec-----cCCceEEEE
Q 000177 1711 RSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS-DIATIP-----VDRCVLDFA 1782 (1922)
Q Consensus 1711 ~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys-~IaTid-----vkr~I~dLa 1782 (1922)
..+..+.. ..+.|+ +|..|+....... + .+....+..++..... ....+. ....+..+.
T Consensus 350 ~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~-~-----------~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~ 416 (719)
T 1z68_A 350 IQITSGKWEAINIFRV-TQDSLFYSSNEFE-E-----------YPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTAS 416 (719)
T ss_dssp EECSCSSSCEEEEEEE-CSSEEEEEESCGG-G-----------CTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEE
T ss_pred EecccCceEEEEEEEE-eCCEEEEEEecCC-C-----------CCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEE
Confidence 44543332 466667 8888877643300 0 0011112222221110 011111 123577889
Q ss_pred EcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1783 TERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1783 ~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
|+|++.++++....... ..+.+|++
T Consensus 417 ~s~dg~~l~~~~s~~~~---p~~~l~d~ 441 (719)
T 1z68_A 417 FSDYAKYYALVCYGPGI---PISTLHDG 441 (719)
T ss_dssp ECGGGSSEEEEECCBSS---CEEEEECS
T ss_pred ECCCCCEEEEEcCCCCC---CeEEEEEC
Confidence 99999988876432211 24566654
No 156
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.54 E-value=2.6e-13 Score=182.91 Aligned_cols=217 Identities=12% Similarity=0.055 Sum_probs=165.9
Q ss_pred eeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-----------CCCCeeEEEeeec-CCCc
Q 000177 1499 RPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-----------HQAPVTLVQSHLS-GETQ 1566 (1922)
Q Consensus 1499 rpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-----------Hss~VtsLq~afS-pDG~ 1566 (1922)
...+.+..|. .+.+.+|+|||++|+++ .++.|++||+... .+..+.+ |...|.++ .|+ |||+
T Consensus 236 ~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~--~~S~pdG~ 309 (1045)
T 1k32_A 236 KDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAE--DFSPLDGD 309 (1045)
T ss_dssp CSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEE--EEEECGGG
T ss_pred CcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCccccccccccccccccee--eecCCCCC
Confidence 3455666665 36678999999999988 4899999999443 3445554 44578999 889 9999
Q ss_pred EEEEecCCcEEEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEE-EEECCCCceeeeeccccccc
Q 000177 1567 LLLSSSSQDVHLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGIL-LYDIQTYQLEAKLSDTSVNL 1640 (1922)
Q Consensus 1567 lLaSSsDgtVkLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIr-IWDlrTgk~i~tL~d~s~~~ 1640 (1922)
+|+++.++.|++|++.. +.. ..+.. ...++|+ +|+.|+++ +.+..+. +||+.+++... +.
T Consensus 310 ~la~~~~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~~~s-dg~~l~~~---s~~~~l~~~~d~~~~~~~~-l~------ 375 (1045)
T 1k32_A 310 LIAFVSRGQAFIQDVSG--TYV-LKVPEPLRIRYVRRGGD-TKVAFIHG---TREGDFLGIYDYRTGKAEK-FE------ 375 (1045)
T ss_dssp CEEEEETTEEEEECTTS--SBE-EECSCCSCEEEEEECSS-SEEEEEEE---ETTEEEEEEEETTTCCEEE-CC------
T ss_pred EEEEEEcCEEEEEcCCC--Cce-EEccCCCcceEEeeeEc-CCCeEEEE---ECCCceEEEEECCCCCceE-ec------
Confidence 99987799999999976 432 23332 3678999 99999988 4477888 99998776432 21
Q ss_pred cCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe---------------
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS--------------- 1699 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS--------------- 1699 (1922)
.+......++|+|+|++|++++ ++||+.+++....+.+|...+ +++|+|||++|++++
T Consensus 376 -~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i 454 (1045)
T 1k32_A 376 -ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 454 (1045)
T ss_dssp -CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred -CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence 1223445599999999998766 899999998887777888776 899999999988753
Q ss_pred EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEEccC
Q 000177 1700 EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d 1737 (1922)
.+||+.+++ +..+..|.. ..++|+|+|++|+.+..++
T Consensus 455 ~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 455 HVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp EEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred EEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 389999887 566666654 6899999999999876533
No 157
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.52 E-value=3.9e-13 Score=174.55 Aligned_cols=212 Identities=12% Similarity=0.112 Sum_probs=146.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCee-----EEEeeecCCCcEEEEec-C---------CcE
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVT-----LVQSHLSGETQLLLSSS-S---------QDV 1576 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vt-----sLq~afSpDG~lLaSSs-D---------gtV 1576 (1922)
..+++|+|||++|+++ ||+|++||+.++++...+.+|...+. .+ .|||||++|+.+. + +.+
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDY--SISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEE--EECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccce--EECCCCCEEEEEECCeeeEEEccceEE
Confidence 4589999999999987 99999999999998888888865432 35 7899999998864 3 567
Q ss_pred EEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc------
Q 000177 1577 HLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA------ 1646 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~------ 1646 (1922)
.+||+.+ +++. .+.. ...++|||||+.|+.+ .++.|++||+.+++......+........++.
T Consensus 95 ~~~d~~~--~~~~-~l~~~~~~~~~~~~SPdG~~la~~----~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 95 DIYDLNK--RQLI-TEERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEETTT--TEEC-CSSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEEECCC--CcEE-EcccCCCcceeeEECCCCCEEEEE----ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 8999987 4432 2332 4789999999999986 35789999999887654222111000001111
Q ss_pred -----ceEEEEcCCCCeEeecc-----------------------------------------EEEEcCC---Cc--cee
Q 000177 1647 -----YSQIHFSPSDTMLLWNG-----------------------------------------ILWDRRN---SV--PVH 1675 (1922)
Q Consensus 1647 -----~~vVaFSPdG~lLaSgg-----------------------------------------rLWDlrt---gk--~I~ 1675 (1922)
...+.|||||+.|+... ++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 12388999999888531 5688877 63 222
Q ss_pred eec------cCCCce-EEEEecCCCEEEEEe---------EEEecCCCe----EE--EEE--cCCCc-------eeEEEc
Q 000177 1676 RFD------QFTDHG-GGGFHPAGNEVIINS---------EVWDLRKFR----LL--RSV--PSLDQ-------TTITFN 1724 (1922)
Q Consensus 1676 kf~------gh~~~V-sVaFSPdG~~LASGS---------eIWDLrTgk----lL--~tl--~gH~~-------~sVaFS 1724 (1922)
.+. ++...+ .+.|+|||+.++... .+||+.+++ +. .++ .++.. ..+.|+
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fs 327 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFT 327 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEEC
T ss_pred EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEc
Confidence 333 255556 899999999766654 388998876 21 112 23332 278999
Q ss_pred cCCCEEE-EEE
Q 000177 1725 ARGDVIY-AIL 1734 (1922)
Q Consensus 1725 PdG~~La-Sgs 1734 (1922)
|||+.|+ ..+
T Consensus 328 pDG~~l~~~~s 338 (740)
T 4a5s_A 328 LDGNSFYKIIS 338 (740)
T ss_dssp TTSSEEEEEEE
T ss_pred CCCCEEEEEEE
Confidence 9999887 554
No 158
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.51 E-value=2.6e-13 Score=166.41 Aligned_cols=184 Identities=11% Similarity=0.071 Sum_probs=135.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------Cceee-----eccCCCCeeEEEeeecCCCcEEE----E
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSS----------SPLES-----CTSHQAPVTLVQSHLSGETQLLL----S 1570 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tg----------k~l~t-----L~gHss~VtsLq~afSpDG~lLa----S 1570 (1922)
..++++++++++.+|++|+.|+ |+||+.... ..+.. ...|...|+++ +|+|++++|+ +
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l--~~spdg~~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHL--ALSCDNLTLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEE--EECTTSCEEEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEE--EEcCCCCEEEEEEec
Confidence 4689999999999999999998 899875311 01111 12356789999 8999999999 6
Q ss_pred e-cCCcEEEeccCCC-----C-CCc---ceEeccc----eeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeecc
Q 000177 1571 S-SSQDVHLWNASSI-----A-GGP---MHSFEGC----KAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1571 S-sDgtVkLWDl~t~-----~-gk~---l~tf~gh----~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
+ .|++|+|||+.+. . .++ +..+.+| ++++|+|+ +++|+++ +.|++|++||++++..+....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~---s~Dg~v~iwD~~~~~~~~~~~- 189 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC---LADGSIAVLQVTETVKVCATL- 189 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE---ETTSCEEEEEESSSEEEEEEE-
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE---ECCCeEEEEEcCCCcceeecc-
Confidence 4 4999999998752 0 022 2333333 88999997 7899998 889999999999986654443
Q ss_pred ccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCC-------ce-EEEEecCCCEEEEEe---
Q 000177 1636 TSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTD-------HG-GGGFHPAGNEVIINS--- 1699 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~-------~V-sVaFSPdG~~LASGS--- 1699 (1922)
.+......++|+|+|++|++++ ++||++ ++....+..+.. .+ ++.|++++.++++.+
T Consensus 190 ------~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d 262 (434)
T 2oit_A 190 ------PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD 262 (434)
T ss_dssp ------CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred ------CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence 1223455699999999999887 899998 666665544321 44 899999998886543
Q ss_pred ---------EEEecCCC
Q 000177 1700 ---------EVWDLRKF 1707 (1922)
Q Consensus 1700 ---------eIWDLrTg 1707 (1922)
.+|++++.
T Consensus 263 g~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 263 GTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCSSSCCEEEEEECCCT
T ss_pred CccCCCCceEEEEeccC
Confidence 39999764
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.51 E-value=1e-13 Score=170.09 Aligned_cols=155 Identities=7% Similarity=0.032 Sum_probs=118.7
Q ss_pred CCCCCCEEEEEEcCCCCEEE----EEeCCCcEEEEECCCC--------Cc---eeeeccCCCCeeEEEeeecCC-CcEEE
Q 000177 1506 DDAGALLTCITFLGDSSHIA----VGSHTKELKIFDSNSS--------SP---LESCTSHQAPVTLVQSHLSGE-TQLLL 1569 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLA----SGS~DGtIkIWDl~tg--------k~---l~tL~gHss~VtsLq~afSpD-G~lLa 1569 (1922)
.|. +.|++++|+|+|++|+ +|+.|++|+|||+.++ +. +..+.+|...|+++ .|+|+ +.+|+
T Consensus 90 ~~~-~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v--~~~p~~~~~la 166 (434)
T 2oit_A 90 PMK-FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDM--KWNPTVPSMVA 166 (434)
T ss_dssp CCS-SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEE--EECSSCTTEEE
T ss_pred cCC-CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEE--EECCCCCCEEE
Confidence 355 7899999999999999 8899999999998654 22 35567899999999 88997 78888
Q ss_pred E-ecCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG 1644 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g 1644 (1922)
+ +.|++|++||+++ +..+....+ +++++|+|+|++|++| +.|++|++||++ ++...++..+.... ..
T Consensus 167 s~s~Dg~v~iwD~~~--~~~~~~~~~~~~~v~~v~wspdg~~lasg---s~dg~v~iwd~~-~~~~~~~~~~~~~~--~~ 238 (434)
T 2oit_A 167 VCLADGSIAVLQVTE--TVKVCATLPSTVAVTSVCWSPKGKQLAVG---KQNGTVVQYLPT-LQEKKVIPCPPFYE--SD 238 (434)
T ss_dssp EEETTSCEEEEEESS--SEEEEEEECGGGCEEEEEECTTSSCEEEE---ETTSCEEEECTT-CCEEEEECCCTTCC--TT
T ss_pred EEECCCeEEEEEcCC--CcceeeccCCCCceeEEEEcCCCCEEEEE---cCCCcEEEEccC-CcccccccCCcccC--CC
Confidence 7 5699999999987 444444433 4889999999999999 889999999998 56555554211111 12
Q ss_pred C--cceEEEEcCCCCeEeecc------------EEEEcCCC
Q 000177 1645 H--AYSQIHFSPSDTMLLWNG------------ILWDRRNS 1671 (1922)
Q Consensus 1645 h--~~~vVaFSPdG~lLaSgg------------rLWDlrtg 1671 (1922)
| .+..++|++++.++++.+ ++||+++.
T Consensus 239 ~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 239 HPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp SCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 3 344599999888885321 79999865
No 160
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.50 E-value=6.1e-12 Score=147.43 Aligned_cols=264 Identities=13% Similarity=0.116 Sum_probs=162.8
Q ss_pred CCCCEEEEEeC----CCcEEEEEC--CCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C----CcEEEeccCCCCCC
Q 000177 1519 GDSSHIAVGSH----TKELKIFDS--NSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S----QDVHLWNASSIAGG 1587 (1922)
Q Consensus 1519 PDG~lLASGS~----DGtIkIWDl--~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D----gtVkLWDl~t~~gk 1587 (1922)
+...++++|++ ++.|.+|.+ .+++.......|...+..+ +|+|||++|++++ + +.|.+|++....+.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l--~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~ 88 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYL--IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT 88 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSE--EECTTSSEEEEEECCSSTTCEEEEEEEETTTTE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceE--EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc
Confidence 34456677754 568999876 4555433222277778888 8899999888753 3 79999998752122
Q ss_pred --cceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC--------CCCcceEEEEc
Q 000177 1588 --PMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG--------RGHAYSQIHFS 1653 (1922)
Q Consensus 1588 --~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~--------~gh~~~vVaFS 1653 (1922)
.+..+.. ...++| ++++++++. ..++.|.+|++.+...+..+... ....+ .......++|+
T Consensus 89 ~~~~~~~~~~~~~p~~~~~--dg~~l~~~~--~~~~~v~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~s 163 (361)
T 3scy_A 89 LHLLNTQKTMGADPCYLTT--NGKNIVTAN--YSGGSITVFPIGQDGALLPASDV-IEFKGSGPDKERQTMPHLHCVRIT 163 (361)
T ss_dssp EEEEEEEECSSSCEEEEEE--CSSEEEEEE--TTTTEEEEEEBCTTSCBCSCSEE-EECCCCCSCTTTCSSCCEEEEEEC
T ss_pred EEEeeEeccCCCCcEEEEE--CCCEEEEEE--CCCCEEEEEEeCCCCcCccccee-EEccCCCCCccccCCCcceEEEEC
Confidence 2223321 244566 888777762 46799999999865443322100 00000 01112449999
Q ss_pred CCCCeEeecc------EEEEcCCCc-------c-------eeeeccCCCceEEEEecCCCEEEEEe------EEEecCCC
Q 000177 1654 PSDTMLLWNG------ILWDRRNSV-------P-------VHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKF 1707 (1922)
Q Consensus 1654 PdG~lLaSgg------rLWDlrtgk-------~-------I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTg 1707 (1922)
|+|++++..+ .+|++.... . ...+........++|+|+|+++++++ .+|++.++
T Consensus 164 pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 164 PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 9999665433 899887543 1 11222222333899999999887766 49999877
Q ss_pred eE--EEEEcCCCc-----eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC----CCceeeeeccCC
Q 000177 1708 RL--LRSVPSLDQ-----TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI----NYSDIATIPVDR 1776 (1922)
Q Consensus 1708 kl--L~tl~gH~~-----~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~----dys~IaTidvkr 1776 (1922)
++ +..+..... ..++|+|+|++|+++.... ...+.+|+.. ....+..+....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-----------------~~~i~v~~~~~~~g~~~~~~~~~~g~ 306 (361)
T 3scy_A 244 MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-----------------ADGVAIFKVDETNGTLTKVGYQLTGI 306 (361)
T ss_dssp EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-----------------SCEEEEEEECTTTCCEEEEEEEECSS
T ss_pred ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-----------------CCEEEEEEEcCCCCcEEEeeEecCCC
Confidence 54 444443322 5999999999998874330 1223444332 223444444445
Q ss_pred ceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.+.+++|+|+++++++.... ...+.+|.+.
T Consensus 307 ~~~~~~~spdg~~l~~~~~~-----~~~v~v~~~d 336 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRD-----TNVIQIFERD 336 (361)
T ss_dssp CCCEEEECTTSCEEEEEETT-----TTEEEEEEEC
T ss_pred CCceEEECCCCCEEEEEECC-----CCCEEEEEEE
Confidence 67899999999999887432 2578888763
No 161
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.48 E-value=2.4e-12 Score=147.71 Aligned_cols=216 Identities=10% Similarity=0.081 Sum_probs=151.7
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCC------CCeeEEEeeecCCC
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQ------APVTLVQSHLSGET 1565 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHs------s~VtsLq~afSpDG 1565 (1922)
+.....+.++++..+....+..++|+|+|++++ ++..++.|.+||+.+++.+..+..+. ..+..+ .|+|+|
T Consensus 26 ~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~--~~spdg 103 (349)
T 1jmx_B 26 VDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSF--AISPDG 103 (349)
T ss_dssp EETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCE--EECTTS
T ss_pred EECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccce--EECCCC
Confidence 334456666666643213578999999998664 55678999999999998877775332 337788 889999
Q ss_pred cEEEEec-------------CCcEEEeccCCCC-CCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1566 QLLLSSS-------------SQDVHLWNASSIA-GGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1566 ~lLaSSs-------------DgtVkLWDl~t~~-gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
++|+++. ++.|.+||+.+.. .+.+..+.. ..+++|+|+|+ ++++ +. .|.+||+.+++
T Consensus 104 ~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~---~~--~i~~~d~~~~~ 177 (349)
T 1jmx_B 104 KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA---GP--DIYKMDVKTGK 177 (349)
T ss_dssp SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE---SS--SEEEECTTTCC
T ss_pred CEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEc---cC--cEEEEeCCCCc
Confidence 9888854 4899999998611 112233332 46788999999 5554 32 39999999998
Q ss_pred eeeeecccccccc--------------C-----------------------------------------------CCCcc
Q 000177 1629 LEAKLSDTSVNLT--------------G-----------------------------------------------RGHAY 1647 (1922)
Q Consensus 1629 ~i~tL~d~s~~~~--------------~-----------------------------------------------~gh~~ 1647 (1922)
.+..+........ . .+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence 8776642110000 0 00112
Q ss_pred eEEEEcC-CCCeEeecc---EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC
Q 000177 1648 SQIHFSP-SDTMLLWNG---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL 1716 (1922)
Q Consensus 1648 ~vVaFSP-dG~lLaSgg---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH 1716 (1922)
..++|+| +|++++++. .+||+.+++.+..+.......+++|+|+|++|++++ .+||+.+++.+..++..
T Consensus 258 ~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred eeeEecCCCCCEEEEEcCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 2367889 998887644 899999999888887555455999999999888766 49999999999888643
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.45 E-value=3.8e-12 Score=165.33 Aligned_cols=284 Identities=12% Similarity=0.066 Sum_probs=175.7
Q ss_pred eeecCceeeEEecCCCCC----CEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCCceeeeccCCCCeeEEEe
Q 000177 1493 FVYSRFRPWRTCRDDAGA----LLTCITFLGDSSHIAVGSHT---------KELKIFDSNSSSPLESCTSHQAPVTLVQS 1559 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~----~Vt~LaFSPDG~lLASGS~D---------GtIkIWDl~tgk~l~tL~gHss~VtsLq~ 1559 (1922)
|.....+....+.+|... .+..++|||||++|+.++.+ +.+.+||+.+++.. .+..|...+...
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~-- 117 (740)
T 4a5s_A 41 FNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWV-- 117 (740)
T ss_dssp EETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEE--
T ss_pred EECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceee--
Confidence 334455556667776511 22448899999999999987 56679999988754 467788889998
Q ss_pred eecCCCcEEEEecCCcEEEeccCCCCCCcce-Eecc---------------------ceeEEEcCCCCEEEEeecCCC--
Q 000177 1560 HLSGETQLLLSSSSQDVHLWNASSIAGGPMH-SFEG---------------------CKAARFSNSGNLFAALPTETS-- 1615 (1922)
Q Consensus 1560 afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~-tf~g---------------------h~sVaFSPDG~~LaSgS~~S~-- 1615 (1922)
.|||||+.|+.+.++.|++||+.+ +...+ +..+ ...+.|||||++|+.++.+..
T Consensus 118 ~~SPdG~~la~~~~~~i~~~~~~~--~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 118 TWSPVGHKLAYVWNNDIYVKIEPN--LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp EECSSTTCEEEEETTEEEEESSTT--SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred EECCCCCEEEEEECCeEEEEECCC--CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCC
Confidence 899999999999999999999976 44322 1111 134889999999998742211
Q ss_pred -------------------------------CCeEEEEECCC---Cce--eeeeccccccccCCCCcceEEEEcCCCCeE
Q 000177 1616 -------------------------------DRGILLYDIQT---YQL--EAKLSDTSVNLTGRGHAYSQIHFSPSDTML 1659 (1922)
Q Consensus 1616 -------------------------------DgtIrIWDlrT---gk~--i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL 1659 (1922)
..+|++||+.+ ++. ...+..+.. ...+.+....++|+|||+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~wspdg~~~ 274 (740)
T 4a5s_A 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS-MLIGDHYLCDVTWATQERIS 274 (740)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH-HHTSCEEEEEEEEEETTEEE
T ss_pred ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc-CCCCCeEEEEEEEeCCCeEE
Confidence 12588899988 732 223321100 00123334459999999966
Q ss_pred eecc---------EEEEcCCCc----c--eeee--ccCCCce------EEEEecCCCEEE-EEe--------EEEecCCC
Q 000177 1660 LWNG---------ILWDRRNSV----P--VHRF--DQFTDHG------GGGFHPAGNEVI-INS--------EVWDLRKF 1707 (1922)
Q Consensus 1660 aSgg---------rLWDlrtgk----~--I~kf--~gh~~~V------sVaFSPdG~~LA-SGS--------eIWDLrTg 1707 (1922)
+... .+||+.+++ + +.++ .++..++ .+.|+|||+.|+ ..+ .+||+.++
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 6321 799999987 2 2222 3344332 578999999877 665 27788766
Q ss_pred eEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeec-----cCCceEEE
Q 000177 1708 RLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIP-----VDRCVLDF 1781 (1922)
Q Consensus 1708 klL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTid-----vkr~I~dL 1781 (1922)
+......+... ..+ +.++|..|+...... ...+....+..++.........+. ....+..+
T Consensus 355 ~~~~lT~g~~~v~~~-~~~d~~~i~f~~~~~------------~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~ 421 (740)
T 4a5s_A 355 DCTFITKGTWEVIGI-EALTSDYLYYISNEY------------KGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSV 421 (740)
T ss_dssp SCEESCCSSSCEEEE-EEECSSEEEEEESCG------------GGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEE
T ss_pred ceEecccCCEEEEEE-EEEeCCEEEEEEecC------------CCCCceeEEEEEECCCCCcceeeccccCCCCCceEEE
Confidence 65443333222 232 235577776553320 011222334444433222111111 13468899
Q ss_pred EEcCCCceEEEEec
Q 000177 1782 ATERTDSFVGLITM 1795 (1922)
Q Consensus 1782 a~SPdds~LAVVe~ 1795 (1922)
.|+|++.+++....
T Consensus 422 ~~S~dg~~~~~~~s 435 (740)
T 4a5s_A 422 SFSKEAKYYQLRCS 435 (740)
T ss_dssp EECTTSSEEEEEEC
T ss_pred EECCCCCEEEEEeC
Confidence 99999998877653
No 163
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.43 E-value=2.9e-12 Score=150.53 Aligned_cols=231 Identities=9% Similarity=0.036 Sum_probs=154.9
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe---
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS--- 1571 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS--- 1571 (1922)
.......+...+|. ..+..+.|+|||++|+.++.++.|++||+.+++....+..+...+....|.+++++++++..
T Consensus 67 ~~~g~~~~lt~~~~-~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~ 145 (388)
T 3pe7_A 67 LNTQVATQLTEGRG-DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIR 145 (388)
T ss_dssp TTTCEEEECCCSSC-BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEE
T ss_pred CCCCceEEeeeCCC-CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecccccc
Confidence 34555555555665 55567789999999999999999999999999887777777776766655679999998741
Q ss_pred --------------------cCCcEEEeccCCCCCCcceEecc---ceeEEEcC-CCCEEEEeecCCC---CCeEEEEEC
Q 000177 1572 --------------------SSQDVHLWNASSIAGGPMHSFEG---CKAARFSN-SGNLFAALPTETS---DRGILLYDI 1624 (1922)
Q Consensus 1572 --------------------sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSP-DG~~LaSgS~~S~---DgtIrIWDl 1624 (1922)
.+..|.+||+.+ ++....... ...+.|+| +|++|+.+..+.. ...|.+||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~ 223 (388)
T 3pe7_A 146 REDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT--GESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINE 223 (388)
T ss_dssp GGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT--CCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEET
T ss_pred CcccccccccchhhhhhccCCcceEEEEECCC--CceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeC
Confidence 246799999987 543322222 36789999 9999888743221 347888888
Q ss_pred CCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------EEEEcCCCcc--eeeeccCCCc---e-EEEE
Q 000177 1625 QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVP--VHRFDQFTDH---G-GGGF 1688 (1922)
Q Consensus 1625 rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~--I~kf~gh~~~---V-sVaF 1688 (1922)
.++.. ..+.. ...+.......|+|+|+.|+..+ .+||+.+++. +..+.++... . ...|
T Consensus 224 ~~~~~-~~l~~-----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~ 297 (388)
T 3pe7_A 224 DGTNM-RKVKT-----HAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM 297 (388)
T ss_dssp TSCCC-EESCC-----CCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE
T ss_pred CCCce-EEeee-----CCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE
Confidence 76544 33320 00011233478999999776422 6899988863 3344331111 1 2479
Q ss_pred ecCCCEEEEE---------e-----EEEecCCCeEEEEEcCCC-------------ceeEEEccCCCEEEEEEc
Q 000177 1689 HPAGNEVIIN---------S-----EVWDLRKFRLLRSVPSLD-------------QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1689 SPdG~~LASG---------S-----eIWDLrTgklL~tl~gH~-------------~~sVaFSPdG~~LaSgs~ 1735 (1922)
+|+|+.|+.. . .+||+.+++.. .+..+. ...++|+|+|+.|+.++.
T Consensus 298 spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 298 VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp EEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 9999988742 1 38999887754 343332 367899999999987753
No 164
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.43 E-value=9.6e-12 Score=145.65 Aligned_cols=282 Identities=7% Similarity=-0.033 Sum_probs=165.2
Q ss_pred CceeeEEecCCCC----CCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEE
Q 000177 1497 RFRPWRTCRDDAG----ALLTCITFLGDSSHIAVGSHT---KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLL 1569 (1922)
Q Consensus 1497 rfrpirtLrgH~d----~~Vt~LaFSPDG~lLASGS~D---GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLa 1569 (1922)
....++.+..+.. ..+.+++|||||++|+..... ..|.+||+.+++......++...+..+ .|+|||+.|+
T Consensus 19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~--~~spdg~~l~ 96 (396)
T 3c5m_A 19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGG--FISTDERAFF 96 (396)
T ss_dssp TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTC--EECTTSSEEE
T ss_pred CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccc--eECCCCCEEE
Confidence 3344555555430 226788999999998877543 478888998877544434333333335 6899999887
Q ss_pred E-ecCCcEEEeccCCCCCCcceEeccc----ee-------------------EEEcCCCCEEEEee--cCCCCCeEEEEE
Q 000177 1570 S-SSSQDVHLWNASSIAGGPMHSFEGC----KA-------------------ARFSNSGNLFAALP--TETSDRGILLYD 1623 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l~tf~gh----~s-------------------VaFSPDG~~LaSgS--~~S~DgtIrIWD 1623 (1922)
. +.++.|++||+.+ ++....+..+ .. +.|+|+++.++... ....+..|.+||
T Consensus 97 ~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d 174 (396)
T 3c5m_A 97 YVKNELNLMKVDLET--LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVD 174 (396)
T ss_dssp EEETTTEEEEEETTT--CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEE
T ss_pred EEEcCCcEEEEECCC--CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEE
Confidence 7 5577899999987 4443333211 11 35677777665531 013567899999
Q ss_pred CCCCceeeeeccccccccCCCCcceEEEEcC-CCCeEeec---------c--EEEEcCCCcceeeeccCC-C-ce-EEEE
Q 000177 1624 IQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWN---------G--ILWDRRNSVPVHRFDQFT-D-HG-GGGF 1688 (1922)
Q Consensus 1624 lrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSg---------g--rLWDlrtgk~I~kf~gh~-~-~V-sVaF 1688 (1922)
+.+++...... .......+.|+| +++.|+.. . .+||+..++.. .+..+. . .+ .+.|
T Consensus 175 ~~~g~~~~~~~--------~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~ 245 (396)
T 3c5m_A 175 IETGELEVIHQ--------DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFW 245 (396)
T ss_dssp TTTCCEEEEEE--------ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEE
T ss_pred CCCCcEEeecc--------CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEE
Confidence 99887655443 123344589999 78766532 2 56676655433 333332 2 23 7899
Q ss_pred ecCCCEEEEEe----------EEEecCCCeEEEEEcCCCceeEEEcc-CCCEEEEEEccCchhhhhhhcccccccCCcce
Q 000177 1689 HPAGNEVIINS----------EVWDLRKFRLLRSVPSLDQTTITFNA-RGDVIYAILRRNLEDVMSAVHTRRVKHPLFAA 1757 (1922)
Q Consensus 1689 SPdG~~LASGS----------eIWDLrTgklL~tl~gH~~~sVaFSP-dG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ss 1757 (1922)
+|+|++|+..+ .+||+.+++...... .....+.|+| +|++++.+.... . +.. .............
T Consensus 246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~s~~dg~~l~~~~~~~-p-~~~-~~~~~~~~~~~~~ 321 (396)
T 3c5m_A 246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPPCSHLMSNFDGSLMVGDGCDA-P-VDV-ADADSYNIENDPF 321 (396)
T ss_dssp CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCSEEEEEECSSSSEEEEEECCC-------------CCCCCCE
T ss_pred CCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCCCCCCccCCCCceEEEecCCc-c-eee-ccccccccCCCCc
Confidence 99999877663 378988876543322 2222389999 999888753210 0 000 0000000012245
Q ss_pred EEEEecCCCceeeeeccCC-----------ceEEEEEcCCCceEEEEec
Q 000177 1758 FRTVDAINYSDIATIPVDR-----------CVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1758 Frt~Da~dys~IaTidvkr-----------~I~dLa~SPdds~LAVVe~ 1795 (1922)
+..++..+........... .+..++|+|++++|+....
T Consensus 322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 322 LYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp EEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred EEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 6666654433221111111 2556789999999887753
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.41 E-value=2.6e-11 Score=143.61 Aligned_cols=215 Identities=12% Similarity=0.099 Sum_probs=143.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCCceeeec--cCCCCeeEEEeeecCCCcE--EEEe-------------
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSN-SSSPLESCT--SHQAPVTLVQSHLSGETQL--LLSS------------- 1571 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~-tgk~l~tL~--gHss~VtsLq~afSpDG~l--LaSS------------- 1571 (1922)
..+..++|+|||++|++++.+ .|.+|++. +++...... .+ +.+.++ .|+|||++ ++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRAN--DADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGG--CTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccE--EECCCCCEEEEEEecCCcceeccceee
Confidence 467899999999999999988 99999997 776544332 12 235567 89999994 4443
Q ss_pred -cCCcEEEeccCCCCCCcceEec--------cceeEEEcCCCCEEEEeecCCCCCeEEEEECC-CCceeeeecccccccc
Q 000177 1572 -SSQDVHLWNASSIAGGPMHSFE--------GCKAARFSNSGNLFAALPTETSDRGILLYDIQ-TYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1572 -sDgtVkLWDl~t~~gk~l~tf~--------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr-Tgk~i~tL~d~s~~~~ 1641 (1922)
.++++.+|++.. .++....+. ..++++|+|+|++++++. ..++.|++||+. +++...... ....
T Consensus 116 ~~~g~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~--~~~~~v~~~~~~~~g~~~~~~~---~~~~ 189 (365)
T 1jof_A 116 KFAGYGNVFSVSE-TGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD--LTANKLWTHRKLASGEVELVGS---VDAP 189 (365)
T ss_dssp SSCCEEEEEEECT-TCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSCEEEEEE---EECS
T ss_pred cCCceEEEEccCC-CCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc--CCCCEEEEEEECCCCCEEEeee---EecC
Confidence 588999999974 144332222 247899999999888762 346799999998 776532111 0000
Q ss_pred CCCCcceEEEEcCCCCeEeecc------EEEEcC--CCcce---eeec-------cCCC------ce-EEE-EecCCCEE
Q 000177 1642 GRGHAYSQIHFSPSDTMLLWNG------ILWDRR--NSVPV---HRFD-------QFTD------HG-GGG-FHPAGNEV 1695 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLaSgg------rLWDlr--tgk~I---~kf~-------gh~~------~V-sVa-FSPdG~~L 1695 (1922)
.++.....++|+|+|+++++.+ .+|++. +++.. ..+. ++.. .+ .++ |+|+|++|
T Consensus 190 ~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 190 DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 0123334489999999876433 788765 56542 1221 1221 34 899 99999988
Q ss_pred EEEe-----------EEEecC-CCeEEE---EEcCCC--ceeEEEcc---CCCEEEEEE
Q 000177 1696 IINS-----------EVWDLR-KFRLLR---SVPSLD--QTTITFNA---RGDVIYAIL 1734 (1922)
Q Consensus 1696 ASGS-----------eIWDLr-TgklL~---tl~gH~--~~sVaFSP---dG~~LaSgs 1734 (1922)
++++ .+|++. ++++.. .+..+. ...++|+| +|++|+++.
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 7653 289996 666543 233332 37899999 899999884
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.41 E-value=2.5e-11 Score=144.99 Aligned_cols=261 Identities=10% Similarity=0.086 Sum_probs=178.8
Q ss_pred ecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCCceeeeccC------CCCeeEEE
Q 000177 1495 YSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSH----------TKELKIFDSNSSSPLESCTSH------QAPVTLVQ 1558 (1922)
Q Consensus 1495 ~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~----------DGtIkIWDl~tgk~l~tL~gH------ss~VtsLq 1558 (1922)
...++.+.++..+. .+ .++|+|||++|++++. +++|.+||..+++.+.++..+ ......+
T Consensus 38 ~~t~~~~~~i~~g~-~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i- 113 (361)
T 2oiz_A 38 YTNGKFLGMVPTAF-NG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLF- 113 (361)
T ss_dssp TTTCCEEEEEECCE-EE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGE-
T ss_pred CCCCeEEEEecCCC-CC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceE-
Confidence 34566677777665 44 8999999999999873 678999999999988877532 3456677
Q ss_pred eeecCCCcEEEEe--c-CCcEEEeccCCCCCCcceE-ecc--ceeEEEcCCC-CEEEEeecCCCCCeEEEEECCC-Ccee
Q 000177 1559 SHLSGETQLLLSS--S-SQDVHLWNASSIAGGPMHS-FEG--CKAARFSNSG-NLFAALPTETSDRGILLYDIQT-YQLE 1630 (1922)
Q Consensus 1559 ~afSpDG~lLaSS--s-DgtVkLWDl~t~~gk~l~t-f~g--h~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrT-gk~i 1630 (1922)
.++|||++|+++ . +++|.+||+.+ ++.+.+ +.. .+.+.+.|++ ..+++. +.|+.+.+|++.. ++..
T Consensus 114 -~~spdg~~l~v~n~~~~~~v~v~d~~~--~~~~~~~i~~~~~~~v~~~p~~~~~~~~~---~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 114 -RQTTDGKFIVLQNASPATSIGIVDVAK--GDYVEDVTAAAGCWSVIPQPNRPRSFMTI---CGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp -EECTTSSEEEEEEESSSEEEEEEETTT--TEEEEEEGGGTTEEEEEECTTSSSEEEEE---ETTSSEEEEEECTTSSEE
T ss_pred -EECCCCCEEEEECCCCCCeEEEEECCC--CcEEEEEecCCCcceeEEcCCCCeeEEEE---CCCCcEEEEEECCCCcEe
Confidence 889999999875 3 67899999998 666666 542 3446778876 566666 6789999999875 5544
Q ss_pred eeeccccccccCCCCcceE-EEEcCCCCeEeecc-----EEEEcCCCcc--eeeeccC-----------CCceEEEEecC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQ-IHFSPSDTMLLWNG-----ILWDRRNSVP--VHRFDQF-----------TDHGGGGFHPA 1691 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~v-VaFSPdG~lLaSgg-----rLWDlrtgk~--I~kf~gh-----------~~~VsVaFSPd 1691 (1922)
........ ........ +.++|++..++..+ .+||+..... +..+... .....++|+|+
T Consensus 188 ~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 188 SQSRSKQM---FSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEEECCCC---SCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred eeccccce---EcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 22110000 00111111 33455554444222 6777765432 2222111 11113789999
Q ss_pred CCEEEEEe----------------EEEecCCCeEEEEEcCCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCc
Q 000177 1692 GNEVIINS----------------EVWDLRKFRLLRSVPSLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLF 1755 (1922)
Q Consensus 1692 G~~LASGS----------------eIWDLrTgklL~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ 1755 (1922)
++.+++.. .+||+.+++.+.+++.+..+.++|+|+|++||++. .
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n-------------------~- 324 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLD-------------------G- 324 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEEC-------------------S-
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeC-------------------C-
Confidence 88776542 27899999999999865578999999999999873 1
Q ss_pred ceEEEEecCCC--ceeeee-ccCCceEEEEEcCCCc
Q 000177 1756 AAFRTVDAINY--SDIATI-PVDRCVLDFATERTDS 1788 (1922)
Q Consensus 1756 ssFrt~Da~dy--s~IaTi-dvkr~I~dLa~SPdds 1788 (1922)
..+.+||..+. +.+.++ .....-..++++|+|.
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 35788999988 889886 5677788899999875
No 167
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.37 E-value=7.1e-12 Score=157.24 Aligned_cols=215 Identities=11% Similarity=0.083 Sum_probs=144.1
Q ss_pred EEecCCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCC---CCceeeeccCCCCeeEEEeeecCCC--cEEEEecC
Q 000177 1502 RTCRDDAGALLTCITFLGDSSHIAVGSH---TKELKIFDSNS---SSPLESCTSHQAPVTLVQSHLSGET--QLLLSSSS 1573 (1922)
Q Consensus 1502 rtLrgH~d~~Vt~LaFSPDG~lLASGS~---DGtIkIWDl~t---gk~l~tL~gHss~VtsLq~afSpDG--~lLaSSsD 1573 (1922)
+.+..|....|.+++|||| +++++++. +...+||.+.. +... .+..+. .+... +|+||+ .+++++.+
T Consensus 57 ~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~-~~~~~--~~s~dg~~~~~~s~~~ 131 (582)
T 3o4h_A 57 VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVK-PMRIL--SGVDTGEAVVFTGATE 131 (582)
T ss_dssp EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSC-SBEEE--EEEECSSCEEEEEECS
T ss_pred EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCC-Cceee--eeCCCCCeEEEEecCC
Confidence 3445544258999999999 88888875 55567765543 3332 343222 34455 455555 45566666
Q ss_pred CcEEEeccCCCCCCcceEecc-ceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG-CKAARFSNSGNLFAALPTETSD-RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g-h~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
+.+.|||+.+ +++...... ..+++|+|||++|++++.+..+ +.|++||+.+++.. .+. .+......++
T Consensus 132 ~~~~l~d~~~--g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-------~~~~~~~~~~ 201 (582)
T 3o4h_A 132 DRVALYALDG--GGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-------SGEGSFSSAS 201 (582)
T ss_dssp SCEEEEEEET--TEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC-------CSSCEEEEEE
T ss_pred CCceEEEccC--CcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-------cCCCccccce
Confidence 6666999987 544333222 2789999999999977332212 78999999988765 343 1122334599
Q ss_pred EcCCCCeEeecc-------EEEEcCCCcceeeeccCCCce-EEE--------EecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1652 FSPSDTMLLWNG-------ILWDRRNSVPVHRFDQFTDHG-GGG--------FHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1652 FSPdG~lLaSgg-------rLWDlrtgk~I~kf~gh~~~V-sVa--------FSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
|+|||++|++.. ++||+.++++. .+.++...+ .+. |+|||..+++++ +||++ ++.+
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 999999999543 79999998877 677776655 556 999998778777 49999 7765
Q ss_pred EEEcCCCceeEEEccCCCEEEEEEcc
Q 000177 1711 RSVPSLDQTTITFNARGDVIYAILRR 1736 (1922)
Q Consensus 1711 ~tl~gH~~~sVaFSPdG~~LaSgs~~ 1736 (1922)
.+.. ....+++|+ +|++++++...
T Consensus 279 ~~~~-~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 279 EAPQ-GNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp CCCS-SEEEEEEEE-TTEEEEEEEET
T ss_pred ccCC-CceEEEEec-CCEEEEEEcCC
Confidence 5222 223689999 99988877543
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.36 E-value=1.2e-10 Score=138.06 Aligned_cols=264 Identities=14% Similarity=0.122 Sum_probs=158.8
Q ss_pred EEEEEeCC--CcEEEEEC--CCCCcee--eec-cCCCCeeEEEeeecCCCcEEEEecCCcEEEeccC-CCCCCcceEec-
Q 000177 1523 HIAVGSHT--KELKIFDS--NSSSPLE--SCT-SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS-SIAGGPMHSFE- 1593 (1922)
Q Consensus 1523 lLASGS~D--GtIkIWDl--~tgk~l~--tL~-gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~-t~~gk~l~tf~- 1593 (1922)
+|++|+.. +.|.+|++ .+++... ... ++...+..+ +|+|+|++|++++.+.|.+|++. + ++......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~--a~spdg~~l~~~~~~~v~~~~~~~~--g~~~~~~~~ 79 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWM--TFDHERKNIYGAAMKKWSSFAVKSP--TEIVHEASH 79 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEE--EECTTSSEEEEEEBTEEEEEEEEET--TEEEEEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEE--EECCCCCEEEEEccceEEEEEECCC--CCEEEeeEe
Confidence 46677764 46877765 4554322 111 244567788 89999998877543399999997 5 54433221
Q ss_pred ---c-ceeEEEcCCCCE--EEEee------cCC----CCCeEEEEECC-CCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1594 ---G-CKAARFSNSGNL--FAALP------TET----SDRGILLYDIQ-TYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1594 ---g-h~sVaFSPDG~~--LaSgS------~~S----~DgtIrIWDlr-Tgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+ ..+++|+|+|++ ++++. .+. .++++.+|++. +++....+.. . ....+.....++|+|+|
T Consensus 80 ~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~--~-~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 80 PIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN--Y-EYQENTGIHGMVFDPTE 156 (365)
T ss_dssp ECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE--E-ECCTTCCEEEEEECTTS
T ss_pred ecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee--E-EeCCCCcceEEEECCCC
Confidence 2 356899999995 44441 001 58899999997 4655443320 0 00012234459999999
Q ss_pred CeEeecc------EEEEcC-CCcce--eeecc--CCCce-EEEEecCCCEEEEEe------EEEecC--CCeEE---EEE
Q 000177 1657 TMLLWNG------ILWDRR-NSVPV--HRFDQ--FTDHG-GGGFHPAGNEVIINS------EVWDLR--KFRLL---RSV 1713 (1922)
Q Consensus 1657 ~lLaSgg------rLWDlr-tgk~I--~kf~g--h~~~V-sVaFSPdG~~LASGS------eIWDLr--TgklL---~tl 1713 (1922)
++++++. .+||+. +++.. ..+.. +.... .++|+|+|+++++++ .+|++. ++++. ..+
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~ 236 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSF 236 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceE
Confidence 9877532 899998 77643 33432 23334 899999999988765 388764 56543 223
Q ss_pred c-------CCC--------ceeEE-EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC-CCceee---eec
Q 000177 1714 P-------SLD--------QTTIT-FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI-NYSDIA---TIP 1773 (1922)
Q Consensus 1714 ~-------gH~--------~~sVa-FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~-dys~Ia---Tid 1773 (1922)
. ++. ...++ |+|+|++|+++...... .....+.+|+.. +..... .+.
T Consensus 237 ~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~-------------~~~~~i~v~~~~~~g~~~~~~~~~~ 303 (365)
T 1jof_A 237 PLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF-------------ELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp ESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST-------------TSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred EcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC-------------CCCCeEEEEEECCCCCEEEeeeeee
Confidence 2 122 36899 99999999877432210 011245555532 222211 122
Q ss_pred -cCCceEEEEEcC---CCceEEEEecCCCCCccceEEEEEec
Q 000177 1774 -VDRCVLDFATER---TDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1774 -vkr~I~dLa~SP---dds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
.......++++| +++++++...+ ...+++|++.
T Consensus 304 ~~~~~~~~~a~sp~~~dg~~l~v~~~~-----~~~v~v~~~~ 340 (365)
T 1jof_A 304 TPTSGGHSNAVSPCPWSDEWMAITDDQ-----EGWLEIYRWK 340 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSS-----SCEEEEEEEE
T ss_pred cCCCCcccceecCCCcCCCEEEEEEcC-----CCeEEEEEEc
Confidence 223456788999 89999877422 2568888763
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.35 E-value=5.7e-11 Score=150.80 Aligned_cols=223 Identities=9% Similarity=0.022 Sum_probs=146.8
Q ss_pred EecCCCCCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCCceeeeccCCCCee---------EEEeeecCCCcE-EEE
Q 000177 1503 TCRDDAGALLTCITFLGDSSHIAVG--SHTKELKIFDSNSSSPLESCTSHQAPVT---------LVQSHLSGETQL-LLS 1570 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lLASG--S~DGtIkIWDl~tgk~l~tL~gHss~Vt---------sLq~afSpDG~l-LaS 1570 (1922)
.+.+|. ..|..++|++++-+++++ +.++...||....+.....+..|...|. ...|..||||+. |+.
T Consensus 18 ~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 18 LVASRS-GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHTC-SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHhhcC-CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 356788 899999999887777777 5688999999765666677777776666 553333599998 777
Q ss_pred ec--CCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecC-------CCCCeEEEEECCC------
Q 000177 1571 SS--SQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTE-------TSDRGILLYDIQT------ 1626 (1922)
Q Consensus 1571 Ss--DgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~-------S~DgtIrIWDlrT------ 1626 (1922)
+. +..|.+|++..........+.. ...++|+|||++|++++.+ .....|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 65 4556666654000022333332 3678999999999988432 1115899999988
Q ss_pred Cceeeee-ccccccccCCCCcceEEEEcCCCCeEeecc-------------EEEEcC-CC---cceeeeccCCCce-EEE
Q 000177 1627 YQLEAKL-SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-------------ILWDRR-NS---VPVHRFDQFTDHG-GGG 1687 (1922)
Q Consensus 1627 gk~i~tL-~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-------------rLWDlr-tg---k~I~kf~gh~~~V-sVa 1687 (1922)
+...... . .......++|||||++|+..+ .+||+. ++ +......++...+ .+.
T Consensus 177 ~~~~~l~~~--------~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 177 SAVRELSDD--------AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp GGSEESSCS--------CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred CceeEEEec--------CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 5543222 1 111222389999999887322 788998 56 3443344445556 899
Q ss_pred EecCCCEEEEEe-----EEE--ecCCCeEEEEEcCCC----------ceeEEEccCCCEEEEEE
Q 000177 1688 FHPAGNEVIINS-----EVW--DLRKFRLLRSVPSLD----------QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1688 FSPdG~~LASGS-----eIW--DLrTgklL~tl~gH~----------~~sVaFSPdG~~LaSgs 1734 (1922)
|+|||+++++++ +|| |+.+++.......+. ...++|+|+|.+++++.
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~ 312 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHG 312 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEB
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEE
Confidence 999999776665 354 555666554333322 24788999999888874
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.32 E-value=4e-10 Score=131.96 Aligned_cols=215 Identities=11% Similarity=0.160 Sum_probs=156.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCC------------------------CcEEEEECCCCCceeeec-cCCCCeeEEEeeecCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHT------------------------KELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~D------------------------GtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpD 1564 (1922)
+.+++++|+|+|+++++.+.+ ++|.+||..+++.+..+. ++-.....| +++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gi--a~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGL--SIDTD 101 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEE--EECTT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEE--EECCC
Confidence 679999999999999998888 579999999999877664 555678899 88999
Q ss_pred CcEEEEe-cCCcEEEeccCCCCCCcceEec-------------cceeEEEcC-CCCEEEEeecCC-CCCeEEEEECCCCc
Q 000177 1565 TQLLLSS-SSQDVHLWNASSIAGGPMHSFE-------------GCKAARFSN-SGNLFAALPTET-SDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1565 G~lLaSS-sDgtVkLWDl~t~~gk~l~tf~-------------gh~sVaFSP-DG~~LaSgS~~S-~DgtIrIWDlrTgk 1628 (1922)
|+++++. .++.|++||.... ...+..+. ..+.++|+| +++.+++. + .++.|++|| .+++
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~-~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d---~~~~~~I~~~~-~~g~ 176 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSK-EGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD---GYCNSRIVQFS-PSGK 176 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCS-SCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE---CSSCCEEEEEC-TTSC
T ss_pred CCEEEEECCCCEEEEEeCCCC-eEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe---CCCCCeEEEEc-CCCC
Confidence 9988885 4889999998641 11455552 237899999 78888876 5 578999999 5677
Q ss_pred eeeeeccccccc---cCCCCcceEEEEcCC-CCeEeecc-----EEEEcCCCcceeeecc--CCCce-EEEEecCCCEEE
Q 000177 1629 LEAKLSDTSVNL---TGRGHAYSQIHFSPS-DTMLLWNG-----ILWDRRNSVPVHRFDQ--FTDHG-GGGFHPAGNEVI 1696 (1922)
Q Consensus 1629 ~i~tL~d~s~~~---~~~gh~~~vVaFSPd-G~lLaSgg-----rLWDlrtgk~I~kf~g--h~~~V-sVaFSPdG~~LA 1696 (1922)
.+..+....... ...-.....++|+|+ +.+++++. ++||..+++.+.++.. +...+ .++|+| |..++
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~ 255 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFA 255 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEE
Confidence 776664110000 000011233999998 77777665 8999998998888843 33344 889999 55444
Q ss_pred EEe------------EEEecCCCeEEEEEc---CCCc--eeEEEccCCCEEEEE
Q 000177 1697 INS------------EVWDLRKFRLLRSVP---SLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1697 SGS------------eIWDLrTgklL~tl~---gH~~--~sVaFSPdG~~LaSg 1733 (1922)
+.+ .+||+.+++.+.++. ++.. ..|+|+|+| .|+.+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyva 308 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIG 308 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEE
Confidence 443 389999999999884 3322 799999999 45544
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.31 E-value=9.4e-10 Score=124.63 Aligned_cols=210 Identities=10% Similarity=0.185 Sum_probs=153.5
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec------cCCCCeeEEEeee-cCCCcEEEEec--CCcE
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT------SHQAPVTLVQSHL-SGETQLLLSSS--SQDV 1576 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~------gHss~VtsLq~af-SpDG~lLaSSs--DgtV 1576 (1922)
+|. ..+.+++++++|+++++.+.++.|.+||.. ++.+..+. +|...+..+ ++ .++++++++.. ++.|
T Consensus 27 g~~-~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i--~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 27 GQF-TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRV--AVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp TCB-SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEE--EEETTTTEEEEEECGGGCEE
T ss_pred Ccc-CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEE--EEEcCCCeEEEEcCCCCCEE
Confidence 455 678999999999999998999999999986 66666653 344678888 77 57888888863 8899
Q ss_pred EEeccCCCCCCcceEec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEE
Q 000177 1577 HLWNASSIAGGPMHSFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVa 1651 (1922)
.+||. + ++.+..+. ..+.++++|+|+.+++. ..++.|.+||.. ++.+..+... ........++
T Consensus 103 ~~~d~-~--g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~---~~~~~i~~~~~~-g~~~~~~~~~-----~~~~~p~~i~ 170 (286)
T 1q7f_A 103 QIYNQ-Y--GQFVRKFGATILQHPRGVTVDNKGRIIVVE---CKVMRVIIFDQN-GNVLHKFGCS-----KHLEFPNGVV 170 (286)
T ss_dssp EEECT-T--SCEEEEECTTTCSCEEEEEECTTSCEEEEE---TTTTEEEEECTT-SCEEEEEECT-----TTCSSEEEEE
T ss_pred EEECC-C--CcEEEEecCccCCCceEEEEeCCCCEEEEE---CCCCEEEEEcCC-CCEEEEeCCC-----CccCCcEEEE
Confidence 99994 3 55555553 24789999999988876 667899999964 5555555310 0112234599
Q ss_pred EcCCCCeEeecc-----EEEEcCCCcceeeeccCC--Cce-EEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCC
Q 000177 1652 FSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT--DHG-GGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLD 1717 (1922)
Q Consensus 1652 FSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~--~~V-sVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~ 1717 (1922)
++|+|++++++. .+||. +++.+..+.... ... .++++|+|+++++.. .+||. +++.+.++..+.
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~ 248 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKV 248 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESS
T ss_pred ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccC
Confidence 999999888754 88996 566677775432 333 899999999888763 48885 477777776543
Q ss_pred c----eeEEEccCCCEEEEE
Q 000177 1718 Q----TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1718 ~----~sVaFSPdG~~LaSg 1733 (1922)
. ..++|+|+|+++++.
T Consensus 249 ~~~~~~~i~~~~~g~l~vs~ 268 (286)
T 1q7f_A 249 KHAQCFDVALMDDGSVVLAS 268 (286)
T ss_dssp CCSCEEEEEEETTTEEEEEE
T ss_pred CCCcceeEEECCCCcEEEEC
Confidence 2 589999999866653
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.27 E-value=2.2e-09 Score=124.15 Aligned_cols=222 Identities=9% Similarity=0.090 Sum_probs=152.9
Q ss_pred ceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C---
Q 000177 1498 FRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S--- 1573 (1922)
Q Consensus 1498 frpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D--- 1573 (1922)
...+..+.+|. ..+.+++|+++|++++++..++.|.+||..+++....+..+...+.++ .++++|++++++. +
T Consensus 34 ~~~~~~~~~~~-~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i--~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 34 AEPWLEISKKG-LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAI--KIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp CEEEEEEESSC-CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEE--EECTTSCEEEEECTTSSS
T ss_pred cceeEEEeccC-ccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceE--EECCCCcEEEEeCCCCCC
Confidence 34556677777 778999999999988899999999999998887665554567889999 8899999888864 4
Q ss_pred -CcEEEeccCCCCCCcceEec------cceeEEEcCCCCEEEEeecC---CCCCeEEEEECCCCceeeeeccccccccCC
Q 000177 1574 -QDVHLWNASSIAGGPMHSFE------GCKAARFSNSGNLFAALPTE---TSDRGILLYDIQTYQLEAKLSDTSVNLTGR 1643 (1922)
Q Consensus 1574 -gtVkLWDl~t~~gk~l~tf~------gh~sVaFSPDG~~LaSgS~~---S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~ 1643 (1922)
+.|.+||..+ +.....+. ..+.+.|+|+|+++++...+ ...+.|..||..+++...... .
T Consensus 111 ~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~ 180 (333)
T 2dg1_A 111 TGGIFAATENG--DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--------N 180 (333)
T ss_dssp CCEEEEECTTS--CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--------E
T ss_pred CceEEEEeCCC--CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--------C
Confidence 5899999876 44332222 24789999999988876210 013556667766555433221 0
Q ss_pred CCcceEEEEcCCCCeE-eecc-----EEEEcCC-Ccceeee--------ccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1644 GHAYSQIHFSPSDTML-LWNG-----ILWDRRN-SVPVHRF--------DQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1644 gh~~~vVaFSPdG~lL-aSgg-----rLWDlrt-gk~I~kf--------~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
......++|+|+|+.+ ++.. .+||+.+ +..+..+ .++ ... .++++++|+++++.. .+|
T Consensus 181 ~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~ 259 (333)
T 2dg1_A 181 ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVF 259 (333)
T ss_dssp ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 1123458999999854 4432 7888864 4433221 222 233 899999999777753 478
Q ss_pred ecCCCeEEEEEcCC--------CceeEEEccCCCEEEEEE
Q 000177 1703 DLRKFRLLRSVPSL--------DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1703 DLrTgklL~tl~gH--------~~~sVaFSPdG~~LaSgs 1734 (1922)
|. +++.+..+... ...+++|+|+|..|+.+.
T Consensus 260 d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 260 NK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp CT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence 88 47777777643 237899999998887664
No 173
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.26 E-value=1.1e-09 Score=125.09 Aligned_cols=218 Identities=13% Similarity=0.087 Sum_probs=153.2
Q ss_pred eEEecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEE
Q 000177 1501 WRTCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHL 1578 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkL 1578 (1922)
+..+..+. ....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.++ .++++|+++++.. ++.|.+
T Consensus 20 ~~~l~~~~-~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l--~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 20 ARRLADGF-TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGH--CLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CEEEECCC-SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEE--EECTTCCEEEEETTTTEEEE
T ss_pred EEEEecCC-ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCccee--eECCCCcEEEEecCCCeEEE
Confidence 44555666 6788999999998 8889999999999999877 67777788889999 8899999988865 689999
Q ss_pred eccCCCCCCcceEec--------cceeEEEcCCCCEEEEeec-CC-------------CCCeEEEEECCCCceeeeeccc
Q 000177 1579 WNASSIAGGPMHSFE--------GCKAARFSNSGNLFAALPT-ET-------------SDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~--------gh~sVaFSPDG~~LaSgS~-~S-------------~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
||..+ ++...... ..+.++|+|+|+++++.+. ++ ..+.|..||.. ++......
T Consensus 95 ~d~~~--g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-- 169 (296)
T 3e5z_A 95 QREPG--GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-- 169 (296)
T ss_dssp ECSTT--CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC--
T ss_pred EcCCC--CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec--
Confidence 99976 44332211 1367999999998887310 01 13456666655 44322221
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc-----EEEEcC-CCcc---eeeeccCCCce-EEEEecCCCEEEEEe---EEEe
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRR-NSVP---VHRFDQFTDHG-GGGFHPAGNEVIINS---EVWD 1703 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlr-tgk~---I~kf~gh~~~V-sVaFSPdG~~LASGS---eIWD 1703 (1922)
.....+.++|+|+|++++++. .+||+. +++. ...+..+.... +++++++|+..++.. .+||
T Consensus 170 ------~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~v~~~~ 243 (296)
T 3e5z_A 170 ------DRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASAGDGVHVLT 243 (296)
T ss_dssp ------CCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEETTEEEEEC
T ss_pred ------CCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEcCCeEEEEC
Confidence 112234499999999886554 788886 5554 34442222333 899999999777654 4889
Q ss_pred cCCCeEEEEEcCCC-ceeEEE-ccCCCEEEEEEc
Q 000177 1704 LRKFRLLRSVPSLD-QTTITF-NARGDVIYAILR 1735 (1922)
Q Consensus 1704 LrTgklL~tl~gH~-~~sVaF-SPdG~~LaSgs~ 1735 (1922)
.. ++.+..+..+. .++++| +|+++.|+++..
T Consensus 244 ~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 244 PD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp TT-SCEEEEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred CC-CCEEEEEECCCCceeEEEECCCCCEEEEEcC
Confidence 86 77888777554 478999 689998988753
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.23 E-value=9.9e-10 Score=131.25 Aligned_cols=261 Identities=11% Similarity=0.101 Sum_probs=169.3
Q ss_pred CCCEEEEEe------CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEEeccC
Q 000177 1520 DSSHIAVGS------HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHLWNAS 1582 (1922)
Q Consensus 1520 DG~lLASGS------~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkLWDl~ 1582 (1922)
+++++++.. .|+.|.+||..+++.+.++..+..+ .+ .|+||+++++++. +++|.+||..
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i--~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~ 89 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HV--QVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD 89 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EE--EECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ce--EECCCCCEEEEEEecccccccCCCCCEEEEEECc
Confidence 556666543 4789999999999998888766555 77 8999999888752 5679999998
Q ss_pred CCCCCcceEecc----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee-eccccccccCCCCcceEEE
Q 000177 1583 SIAGGPMHSFEG----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK-LSDTSVNLTGRGHAYSQIH 1651 (1922)
Q Consensus 1583 t~~gk~l~tf~g----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t-L~d~s~~~~~~gh~~~vVa 1651 (1922)
+ .+.+.++.. ...++|+|+|++++++.. +.+++|.+||+.+++.+.+ +..+ ....+.
T Consensus 90 t--~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~-~~~~~v~v~d~~~~~~~~~~i~~~---------~~~~v~ 157 (361)
T 2oiz_A 90 K--LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNA-SPATSIGIVDVAKGDYVEDVTAAA---------GCWSVI 157 (361)
T ss_dssp T--CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEGGGT---------TEEEEE
T ss_pred C--CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECC-CCCCeEEEEECCCCcEEEEEecCC---------CcceeE
Confidence 7 666666541 367999999999988722 2368999999999988877 6410 011133
Q ss_pred EcCCC-CeEeecc-----EEEEcCC-Ccce------eeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCe--EEE
Q 000177 1652 FSPSD-TMLLWNG-----ILWDRRN-SVPV------HRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFR--LLR 1711 (1922)
Q Consensus 1652 FSPdG-~lLaSgg-----rLWDlrt-gk~I------~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgk--lL~ 1711 (1922)
+.|++ ..+++.+ .+|++.. ++.. ..|......+.+.++|++..++..+ .+||+.... .+.
T Consensus 158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 44443 2222111 3455543 4333 2333333344445567776555444 377775432 333
Q ss_pred EEcCCC------------ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceE
Q 000177 1712 SVPSLD------------QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVL 1779 (1922)
Q Consensus 1712 tl~gH~------------~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~ 1779 (1922)
.+.-.. ...++|+|+|..+|++...+..... .......+.+||..+.+.+.++.... .+
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~--------~~~~~~~v~viD~~t~~~v~~i~~~~-p~ 308 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT--------HKFPAAEIWVMDTKTKQRVARIPGRD-AL 308 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC--------TTCCCSEEEEEETTTTEEEEEEECTT-CC
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc--------ccCCCceEEEEECCCCcEEEEEecCC-ee
Confidence 322111 1248999999999987531211000 00123468899999999999999888 99
Q ss_pred EEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1780 DFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1780 dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
.++++|+++++.+.. . ..+.+|+...
T Consensus 309 ~ia~spdg~~l~v~n-----~--~~v~v~D~~t 334 (361)
T 2oiz_A 309 SMTIDQQRNLMLTLD-----G--GNVNVYDISQ 334 (361)
T ss_dssp EEEEETTTTEEEEEC-----S--SCEEEEECSS
T ss_pred EEEECCCCCEEEEeC-----C--CeEEEEECCC
Confidence 999999999888663 1 6688887643
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.22 E-value=1.3e-08 Score=129.55 Aligned_cols=290 Identities=12% Similarity=0.072 Sum_probs=191.8
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCCceeeeccCCCCeeEEEeeec----CCCc
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSN--SSSPLESCTSHQAPVTLVQSHLS----GETQ 1566 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~--tgk~l~tL~gHss~VtsLq~afS----pDG~ 1566 (1922)
+...+.+.+.++... ..+..+.|||||++|++++.|+.|.+||+. +++.+.++.... ....+ .|+ |||+
T Consensus 182 iD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~i--a~s~~~~pDGk 256 (567)
T 1qks_A 182 IDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSI--ETSKMEGWEDK 256 (567)
T ss_dssp EETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEE--EECCSTTCTTT
T ss_pred EECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCcee--EEccccCCCCC
Confidence 334456666666543 357799999999999999999999999996 788887776433 34677 789 6999
Q ss_pred EEEEe--cCCcEEEeccCCCCCCcceEecc---------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1567 LLLSS--SSQDVHLWNASSIAGGPMHSFEG---------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1567 lLaSS--sDgtVkLWDl~t~~gk~l~tf~g---------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
+++++ .+++|.|||..+ .+++.++.- +..+.+++++..++... ...+.|.++|..+.+.
T Consensus 257 ~l~v~n~~~~~v~ViD~~t--~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~--~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 257 YAIAGAYWPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV--KETGKILLVDYTDLNN 332 (567)
T ss_dssp EEEEEEEETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEETTCSSE
T ss_pred EEEEEEccCCeEEEEECCC--CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe--cCCCeEEEEecCCCcc
Confidence 88875 389999999887 666665431 13566777766554442 5679999999887543
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCcceeeecc-CCCc----eEEEEecCCCEE-EE
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSVPVHRFDQ-FTDH----GGGGFHPAGNEV-II 1697 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk~I~kf~g-h~~~----VsVaFSPdG~~L-AS 1697 (1922)
..... . ..+.....+.|+|+|++++++. .+||+.+++.+..+.- ...+ ....++|++..+ ++
T Consensus 333 ~~v~~---i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t 406 (567)
T 1qks_A 333 LKTTE---I---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 406 (567)
T ss_dssp EEEEE---E---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEE
T ss_pred ceeee---e---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEe
Confidence 32211 0 0122223478999999887544 8999999988777654 2211 122368985544 44
Q ss_pred Ee------EEEecCC-------CeEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEe
Q 000177 1698 NS------EVWDLRK-------FRLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVD 1762 (1922)
Q Consensus 1698 GS------eIWDLrT-------gklL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~D 1762 (1922)
+. .+||..+ ++.+++++.... ..+.++|+++++++...-+-+. ....++.++|
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~------------~~~~~v~v~d 474 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA------------EISGSVAVFD 474 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH------------HHHTCEEEEE
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc------------ccCceEEEEE
Confidence 42 3899988 789999985533 5689999999999874211100 0124567777
Q ss_pred cCCC-----ce-eeeec---------cCCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1763 AINY-----SD-IATIP---------VDRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1763 a~dy-----s~-IaTid---------vkr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
..+. .. +..+. ..+.+..+.++|+|.++.+...... +..+.|-+++.
T Consensus 475 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~-~~~~~i~v~D~ 536 (567)
T 1qks_A 475 IKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGK-DQESALVVVDD 536 (567)
T ss_dssp GGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCT-TSCCEEEEEET
T ss_pred CCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCC-CCCCcEEEEEC
Confidence 6665 21 12232 2457899999999999887643221 11245556653
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.22 E-value=1.4e-10 Score=135.79 Aligned_cols=211 Identities=8% Similarity=-0.011 Sum_probs=138.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeE---EE--------------eeecCCCcEEEEe----
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTL---VQ--------------SHLSGETQLLLSS---- 1571 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vts---Lq--------------~afSpDG~lLaSS---- 1571 (1922)
..+.|+|||++|+.++.++.|++||+.+++....+..+...... |. ..|+|+++.++..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 34789999999999999999999999988876666555443322 10 1567888776552
Q ss_pred --cCCcEEEeccCCCCCCcceEecc---ceeEEEcC-CCCEEEEeecCCCC---CeEEEEECCCCceeeeeccccccccC
Q 000177 1572 --SSQDVHLWNASSIAGGPMHSFEG---CKAARFSN-SGNLFAALPTETSD---RGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1572 --sDgtVkLWDl~t~~gk~l~tf~g---h~sVaFSP-DG~~LaSgS~~S~D---gtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
.+..|.+||+.+ ++....... +..+.|+| +++.|+.++.+..+ ..|.+||+.+++.. .+.. ..
T Consensus 164 ~~~~~~l~~~d~~~--g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~-----~~ 235 (396)
T 3c5m_A 164 TNPTCRLIKVDIET--GELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKE-----HA 235 (396)
T ss_dssp TCCCEEEEEEETTT--CCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSC-----CC
T ss_pred CCCcceEEEEECCC--CcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeec-----cC
Confidence 356799999987 554333322 36789999 78877776432211 57899998765532 2320 00
Q ss_pred CCCcceEEEEcCCCCeEeecc----------EEEEcCCCcceeeeccCCCceEEEEec-CCCEEEEEe------------
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG----------ILWDRRNSVPVHRFDQFTDHGGGGFHP-AGNEVIINS------------ 1699 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg----------rLWDlrtgk~I~kf~gh~~~VsVaFSP-dG~~LASGS------------ 1699 (1922)
.......+.|+|+|++|+..+ .+||+.+++...... ... ..+.|+| +|+++++++
T Consensus 236 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 236 EGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CSHLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp TTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EEEEEECSSSSEEEEEECCC---------
T ss_pred CCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CCCCccCCCCceEEEecCCcceeeccccc
Confidence 012233489999999776442 788988876433221 122 2389999 999888631
Q ss_pred ---------EEEecCCCeEEEEEcCCC-------------ceeEEEccCCCEEEEEE
Q 000177 1700 ---------EVWDLRKFRLLRSVPSLD-------------QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 ---------eIWDLrTgklL~tl~gH~-------------~~sVaFSPdG~~LaSgs 1734 (1922)
.+||+.+++.. .+..+. ...+.|+|+|+.|+.+.
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp -CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred cccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence 37888877643 333222 24689999999988774
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.19 E-value=3.2e-09 Score=122.72 Aligned_cols=251 Identities=11% Similarity=0.106 Sum_probs=164.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~ 1588 (1922)
..|+++.|++++..++..+.++.++.| .++....+..+...+.++ .|++++++++++ .++.|.+||..+ ++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~g~l~~~~~~~~~i~~~d~~~--~~~ 78 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGL--NFDRQGQLFLLDVFEGNIFKINPET--KEI 78 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEE--EECTTSCEEEEETTTCEEEEECTTT--CCE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCc--EECCCCCEEEEECCCCEEEEEeCCC--CcE
Confidence 457888999988888888889999999 455666777777788899 789999988775 488999999986 444
Q ss_pred ceEe----ccceeEEEcCCCCEEEEeecCCCC----CeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1589 MHSF----EGCKAARFSNSGNLFAALPTETSD----RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1589 l~tf----~gh~sVaFSPDG~~LaSgS~~S~D----gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
...+ ....+++|+|+|+++++. ..+ +.|.+||..++.....+... ..+.....++++|+|++++
T Consensus 79 ~~~~~~~~~~~~~i~~~~dg~l~v~~---~~~~~~~~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~i~~d~~g~l~v 150 (333)
T 2dg1_A 79 KRPFVSHKANPAAIKIHKDGRLFVCY---LGDFKSTGGIFAATENGDNLQDIIEDL-----STAYCIDDMVFDSKGGFYF 150 (333)
T ss_dssp EEEEECSSSSEEEEEECTTSCEEEEE---CTTSSSCCEEEEECTTSCSCEEEECSS-----SSCCCEEEEEECTTSCEEE
T ss_pred EEEeeCCCCCcceEEECCCCcEEEEe---CCCCCCCceEEEEeCCCCEEEEEEccC-----ccCCcccceEECCCCCEEE
Confidence 3322 124789999999988876 444 68999999887764333210 1223445599999999888
Q ss_pred ec---------cEEEEcC--CCcceeeeccCCCceEEEEecCCCEEEEEe------EEEecCC-CeEEE--------EEc
Q 000177 1661 WN---------GILWDRR--NSVPVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRK-FRLLR--------SVP 1714 (1922)
Q Consensus 1661 Sg---------grLWDlr--tgk~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrT-gklL~--------tl~ 1714 (1922)
+. +.||.+. +++.............++|+|+|++|+.+. .+||+.+ +..+. .+.
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred EeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence 64 2566654 333332222222233899999998665443 3788863 33222 122
Q ss_pred CCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC-------ceEEEEEcCC
Q 000177 1715 SLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR-------CVLDFATERT 1786 (1922)
Q Consensus 1715 gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr-------~I~dLa~SPd 1786 (1922)
++.. ..++++++|+++++....+ .+..++. +...+..+.... .+..++|+|+
T Consensus 231 ~~~~~~~i~~d~~G~l~v~~~~~~-------------------~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 231 GHEGPDSCCIDSDDNLYVAMYGQG-------------------RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp SSSEEEEEEEBTTCCEEEEEETTT-------------------EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred CCCCCCceEECCCCCEEEEEcCCC-------------------EEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 2222 6899999998777663222 2334443 223333333322 4788999998
Q ss_pred CceEEEEec
Q 000177 1787 DSFVGLITM 1795 (1922)
Q Consensus 1787 ds~LAVVe~ 1795 (1922)
+..|.+...
T Consensus 291 g~~L~v~~~ 299 (333)
T 2dg1_A 291 TNQLIICSN 299 (333)
T ss_dssp SCEEEEEEE
T ss_pred CCEEEEEeC
Confidence 877776653
No 178
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.19 E-value=9.6e-10 Score=142.12 Aligned_cols=214 Identities=14% Similarity=0.055 Sum_probs=146.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCc----
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTK-----ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQD---- 1575 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DG-----tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgt---- 1575 (1922)
+|. ..+..++|||||++|+.++.++ +|++||+.+++.+.....+. .+..+ +|+|||+.|+.+ .++.
T Consensus 122 ~~~-~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~--~wspDg~~l~~~~~~~~~~~~ 197 (710)
T 2xdw_A 122 DGT-VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCM--AWTHDGKGMFYNAYPQQDGKS 197 (710)
T ss_dssp TSC-EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCE--EECTTSSEEEEEECCCCSSCC
T ss_pred CCC-EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceE--EEEeCCCEEEEEEECCccccc
Confidence 354 4688999999999998877654 89999999998765432222 26677 899999988774 4544
Q ss_pred ------------EEEeccCCCCCCc--ceEecc------ceeEEEcCCCCEEEEeecCCC--CCeEEEEECCC------C
Q 000177 1576 ------------VHLWNASSIAGGP--MHSFEG------CKAARFSNSGNLFAALPTETS--DRGILLYDIQT------Y 1627 (1922)
Q Consensus 1576 ------------VkLWDl~t~~gk~--l~tf~g------h~sVaFSPDG~~LaSgS~~S~--DgtIrIWDlrT------g 1627 (1922)
|++|++.+ +.. ...+.. ...+.|+|||++|+.++..+. +..|++||+.+ +
T Consensus 198 ~~~~~~~~~~~~v~~~~l~t--~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 198 DGTETSTNLHQKLYYHVLGT--DQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp SSSCCCCCCCCEEEEEETTS--CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccCCCCEEEEEECCC--CcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence 99999987 332 222222 257899999999888754332 67899999987 5
Q ss_pred c-eeeeeccccccccCCCCcceEEEEcCCCCeEeecc---------EEEEcCCCc--ceeeeccCCC--ce-EEEEecCC
Q 000177 1628 Q-LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---------ILWDRRNSV--PVHRFDQFTD--HG-GGGFHPAG 1692 (1922)
Q Consensus 1628 k-~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---------rLWDlrtgk--~I~kf~gh~~--~V-sVaFSPdG 1692 (1922)
. ....+.. ........|+|+|+.|+..+ .+||+.++. ....+..+.. .+ .+.|++++
T Consensus 276 ~~~~~~l~~--------~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 347 (710)
T 2xdw_A 276 ILKWVKLID--------NFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (710)
T ss_dssp SCCCEEEEC--------SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred ccceEEeeC--------CCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC
Confidence 3 3444431 11111245889998776322 678887764 2345555544 45 78898777
Q ss_pred CEEEEEe-------EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1693 NEVIINS-------EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1693 ~~LASGS-------eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.++++.. .+|++.+++.++.+..+.. ..+.++|+++.++..
T Consensus 348 ~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~ 397 (710)
T 2xdw_A 348 FLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ 397 (710)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEE
T ss_pred EEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEE
Confidence 7777766 2678777888888876644 578899999877644
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.13 E-value=5.2e-09 Score=121.22 Aligned_cols=229 Identities=5% Similarity=0.045 Sum_probs=142.8
Q ss_pred CEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C---Cc--
Q 000177 1511 LLTCITFLGDSSHIAVGS---------HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S---QD-- 1575 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS---------~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D---gt-- 1575 (1922)
.+...+| ||++|+... .++.|.+||+.+++.. .+ ..+..+ .|||||+.|+... + +.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~--~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMP--RISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEE--EECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCe--EECCCCCEEEEEEeccCCCcce
Confidence 4667777 888877642 3678999999887753 33 457778 8999999888743 2 33
Q ss_pred EEEeccCCCCCCcceEe--ccceeEEEcCCCCEEEEeecC------------------------CCCCeEEEEECCCCce
Q 000177 1576 VHLWNASSIAGGPMHSF--EGCKAARFSNSGNLFAALPTE------------------------TSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf--~gh~sVaFSPDG~~LaSgS~~------------------------S~DgtIrIWDlrTgk~ 1629 (1922)
|.+||+.+ ++..... ..+..+.|+|+|+.|+.++.. .....|.+||+.+++.
T Consensus 87 l~~~~~~~--g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 164 (347)
T 2gop_A 87 IWVADLET--LSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV 164 (347)
T ss_dssp EEEEETTT--TEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred EEEEECCC--CceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence 77778775 4433222 225788999999998887421 0135799999998887
Q ss_pred eeeeccccccccCCCCcceEEEEcCCCCeEeec-----------c-EEEEcCCCcceeeeccCCCceEEEEecCCCEEEE
Q 000177 1630 EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN-----------G-ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1630 i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg-----------g-rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LAS 1697 (1922)
+..+.. . ....+.|+|+| ++++. . .||.+.+++ +..+..+ ..+ ..++|+|++|+.
T Consensus 165 ~~~l~~--------~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~-~~~spdg~~l~~ 231 (347)
T 2gop_A 165 IEEFEK--------P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSF-YAVDSDGERILL 231 (347)
T ss_dssp EEEEEE--------E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESE-EEEEECSSCEEE
T ss_pred EeeecC--------C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cce-eeECCCCCEEEE
Confidence 555541 1 34458999999 76654 2 566666444 3344333 333 233999998876
Q ss_pred Ee-----------EEEecCCCeEEEEEcCCCc--ee-EEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEec
Q 000177 1698 NS-----------EVWDLRKFRLLRSVPSLDQ--TT-ITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDA 1763 (1922)
Q Consensus 1698 GS-----------eIWDLrTgklL~tl~gH~~--~s-VaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da 1763 (1922)
.+ +||-+.+++.......+.. .. +.|+ +| +++++..+... .+. ++
T Consensus 232 ~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~-----------------~l~-~~- 290 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV-----------------NLY-IW- 290 (347)
T ss_dssp EECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE-----------------EEE-EE-
T ss_pred EEccccCCccccceEEEECCCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE-----------------EEE-Ec-
Confidence 65 3554445555443444443 44 8999 88 66666432211 122 22
Q ss_pred CCCceeeeeccCCceEEEEEcC
Q 000177 1764 INYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1764 ~dys~IaTidvkr~I~dLa~SP 1785 (1922)
+......+.....|.+++|+|
T Consensus 291 -~g~~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 291 -DGEIKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp -SSSEEEEECSSSEEEEEEESS
T ss_pred -CCceEEEecCCCeEEeeeeeC
Confidence 222222333456688999999
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.11 E-value=2.3e-09 Score=136.16 Aligned_cols=223 Identities=9% Similarity=-0.012 Sum_probs=138.2
Q ss_pred eeEEecCCCCCCEE---------EEEEc--CCCCE-EEEEeC-CCcEEEEECC--CCCceeeecc-----CCCCeeEEEe
Q 000177 1500 PWRTCRDDAGALLT---------CITFL--GDSSH-IAVGSH-TKELKIFDSN--SSSPLESCTS-----HQAPVTLVQS 1559 (1922)
Q Consensus 1500 pirtLrgH~d~~Vt---------~LaFS--PDG~l-LASGS~-DGtIkIWDl~--tgk~l~tL~g-----Hss~VtsLq~ 1559 (1922)
..+.+..|. ..+. ...|+ |||++ |+..+. +..|.+|++. .......+.. |...+..+
T Consensus 59 ~~~~l~~~~-~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~-- 135 (662)
T 3azo_A 59 AEESALPAP-WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADP-- 135 (662)
T ss_dssp CEEESSCTT-CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEE--
T ss_pred CcceeCCCC-ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCc--
Confidence 345566665 4555 55565 99998 776554 5667777765 2034455655 66778888
Q ss_pred eecCCCcEEEEe-cC----------CcEEEeccCCCCC---CcceEec-c----ceeEEEcCCCCEEEEeecCC-----C
Q 000177 1560 HLSGETQLLLSS-SS----------QDVHLWNASSIAG---GPMHSFE-G----CKAARFSNSGNLFAALPTET-----S 1615 (1922)
Q Consensus 1560 afSpDG~lLaSS-sD----------gtVkLWDl~t~~g---k~l~tf~-g----h~sVaFSPDG~~LaSgS~~S-----~ 1615 (1922)
+|+|||+.|+++ .+ .+|++||+.+... .....+. . ...++|+|||++|+.++... .
T Consensus 136 ~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~ 215 (662)
T 3azo_A 136 VLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWE 215 (662)
T ss_dssp EEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTT
T ss_pred EECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCC
Confidence 899999988874 34 4799999975100 2233333 2 36789999999998874322 1
Q ss_pred CCeEEEEECC-CCc--eeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----E--EEEcCCCcceeeeccCCCc--
Q 000177 1616 DRGILLYDIQ-TYQ--LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----I--LWDRRNSVPVHRFDQFTDH-- 1683 (1922)
Q Consensus 1616 DgtIrIWDlr-Tgk--~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----r--LWDlrtgk~I~kf~gh~~~-- 1683 (1922)
...|++||+. +++ ....+. ..+......+.|+|||++++++. . +||+.+++.......+...
T Consensus 216 ~~~i~~~d~~~~g~~~~~~~l~------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 289 (662)
T 3azo_A 216 GTELKTARVTEDGRFADTRTLL------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAG 289 (662)
T ss_dssp CEEEEEEEECTTSCEEEEEEEE------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSC
T ss_pred CcEEEEEEECCCCcccccEEeC------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccC
Confidence 2589999999 562 223332 01123344589999999776554 4 4555466544433332221
Q ss_pred ------e-EEEEecCCCEEEEEe----EEE--ecCCCeEEEEEcCCCceeEEE-ccCCCEEEE
Q 000177 1684 ------G-GGGFHPAGNEVIINS----EVW--DLRKFRLLRSVPSLDQTTITF-NARGDVIYA 1732 (1922)
Q Consensus 1684 ------V-sVaFSPdG~~LASGS----eIW--DLrTgklL~tl~gH~~~sVaF-SPdG~~LaS 1732 (1922)
+ .+.|+|++.++++++ +|| |+.+++ ++.+..+....-.+ ++++..++.
T Consensus 290 p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~ 351 (662)
T 3azo_A 290 PLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVG 351 (662)
T ss_dssp CCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEE
T ss_pred ccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEE
Confidence 2 688999999998874 688 655555 67777665422222 666665543
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.09 E-value=4.8e-09 Score=121.48 Aligned_cols=200 Identities=12% Similarity=0.068 Sum_probs=127.9
Q ss_pred CEEEEEEcCCCCEEEEEeCC---C--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-C-----------
Q 000177 1511 LLTCITFLGDSSHIAVGSHT---K--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-S----------- 1573 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~D---G--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-D----------- 1573 (1922)
.+.+++|||||++|+..+.+ + .|.+|++.+++.......+ . +..+ .|+|||+.|+.+. +
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~--~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSL--EWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEE--EECTTSSEEEEEEECCCC--------
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccce--eECCCCCEEEEEEccCCCcCCcEEEc
Confidence 37789999999999988764 3 4888898887765544433 3 8888 8899999887743 2
Q ss_pred ----------------CcEEEeccCCCCCCcceEec--cceeEEEcCCCCEEEEeecCCC-C--C-eEEEEECCCCceee
Q 000177 1574 ----------------QDVHLWNASSIAGGPMHSFE--GCKAARFSNSGNLFAALPTETS-D--R-GILLYDIQTYQLEA 1631 (1922)
Q Consensus 1574 ----------------gtVkLWDl~t~~gk~l~tf~--gh~sVaFSPDG~~LaSgS~~S~-D--g-tIrIWDlrTgk~i~ 1631 (1922)
..|.+||+.+ ++.+..+. .+..+.|+|+| +++++..+.. . . ...||.+.+++. .
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~--~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~ 211 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTES--EEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-E 211 (347)
T ss_dssp -CCCC---------CEEEEEEEETTT--TEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-E
T ss_pred ccceeecCcccccCccceEEEEECCC--CeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-E
Confidence 4689999976 54423332 46789999999 7666632211 0 1 334444445543 3
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEeecc-----------EEEEcCCCcceeeeccCCCce-E-EEEecCCCEEEEE
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----------ILWDRRNSVPVHRFDQFTDHG-G-GGFHPAGNEVIIN 1698 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----------rLWDlrtgk~I~kf~gh~~~V-s-VaFSPdG~~LASG 1698 (1922)
.+. .+ .....++|+|++|+..+ .||-+.+++....+..+...+ . +.|+ +| .++++
T Consensus 212 ~l~---------~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~ 279 (347)
T 2gop_A 212 KMF---------EK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGKEVMGILDEVDRGVGQAKIKD-GK-VYFTL 279 (347)
T ss_dssp EEE---------EE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEECSSCEEESSTTCCSEEEEEEEET-TE-EEEEE
T ss_pred Eec---------cC-cceeeECCCCCEEEEEEccccCCccccceEEEECCCceEeccccCCcccCCccEEc-Cc-EEEEE
Confidence 333 12 33344599999876322 344443555444444555556 4 8999 88 77776
Q ss_pred e-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1699 S-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1699 S-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
+ +|| +.+++....+.+ .. .+++|+| .+++++.
T Consensus 280 ~~~~~~~l~-~~~g~~~~~~~~-~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 280 FEEGSVNLY-IWDGEIKPIAKG-RHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp EETTEEEEE-EESSSEEEEECS-SSEEEEEEESS--SEEEEEE
T ss_pred ecCCcEEEE-EcCCceEEEecC-CCeEEeeeeeC--cEEEEEc
Confidence 6 499 887766554443 33 6889999 5666653
No 182
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.09 E-value=6.1e-09 Score=120.40 Aligned_cols=202 Identities=14% Similarity=0.115 Sum_probs=156.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCC-CCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQ-APVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG---- 1594 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHs-s~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g---- 1594 (1922)
.+++|++++.|+.|++||..+|+.+.++..|. ..++++ .++|+|++++ +.++.|..||. + ++.+.++..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~--~~~pdG~ilv-s~~~~V~~~d~-~--G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSV--AATKAGEILF-SYSKGAKMITR-D--GRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEE--EECTTSCEEE-ECBSEEEEECT-T--SCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCe--EECCCCCEEE-eCCCCEEEECC-C--CCEEEEEcCCCCc
Confidence 46899999999999999999999999998766 578888 7899999999 56788999998 5 777877764
Q ss_pred -ceeEEEcCCCCEEEEeecCCC-CCeEEEEECCCCceeeeeccccccccCCCC-cceEEEEcCCCCeEeecc-----EEE
Q 000177 1595 -CKAARFSNSGNLFAALPTETS-DRGILLYDIQTYQLEAKLSDTSVNLTGRGH-AYSQIHFSPSDTMLLWNG-----ILW 1666 (1922)
Q Consensus 1595 -h~sVaFSPDG~~LaSgS~~S~-DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh-~~~vVaFSPdG~lLaSgg-----rLW 1666 (1922)
+.++.+.++|+++++. +. ++.|..+|. +|+.+.++.-..... ..| ....+++.++|+++++.. ..|
T Consensus 78 ~~~~~~~~~dG~~lv~~---~~~~~~v~~vd~-~Gk~l~~~~~~~~~~--~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~ 151 (276)
T 3no2_A 78 EMQTARILPDGNALVAW---CGHPSTILEVNM-KGEVLSKTEFETGIE--RPHAQFRQINKNKKGNYLVPLFATSEVREI 151 (276)
T ss_dssp EEEEEEECTTSCEEEEE---ESTTEEEEEECT-TSCEEEEEEECCSCS--SGGGSCSCCEECTTSCEEEEETTTTEEEEE
T ss_pred cccccEECCCCCEEEEe---cCCCCEEEEEeC-CCCEEEEEeccCCCC--cccccccCceECCCCCEEEEecCCCEEEEE
Confidence 2568899999999987 44 677888886 688777764111000 011 112267899999999765 899
Q ss_pred EcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC--------ceeEEEccCCCEEEEE
Q 000177 1667 DRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD--------QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1667 Dlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~--------~~sVaFSPdG~~LaSg 1733 (1922)
|.. |+.+.++.......++.+.++|+.+++++ ..||..+++.+.++.... ...+...++|.++++.
T Consensus 152 d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 152 APN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp CTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 987 99999998765555888899999998877 378888899998886331 1577888999888877
Q ss_pred E
Q 000177 1734 L 1734 (1922)
Q Consensus 1734 s 1734 (1922)
+
T Consensus 231 ~ 231 (276)
T 3no2_A 231 W 231 (276)
T ss_dssp E
T ss_pred c
Confidence 4
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.06 E-value=3.8e-08 Score=125.43 Aligned_cols=272 Identities=11% Similarity=0.066 Sum_probs=177.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---
Q 000177 1519 GDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG--- 1594 (1922)
Q Consensus 1519 PDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g--- 1594 (1922)
+.+.++++...+++|.+||..+++.+.++... ..+..+ .|+|||+++++ +.|+.|.+||+.....+.+.++..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v--~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHIS--RLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEE--EECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccce--EECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence 45567788888999999999999999888633 356688 89999998877 558999999995111566666642
Q ss_pred ceeEEEc----CCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCC-CC---cceEEEEcCCCCeEeec----
Q 000177 1595 CKAARFS----NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGR-GH---AYSQIHFSPSDTMLLWN---- 1662 (1922)
Q Consensus 1595 h~sVaFS----PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~-gh---~~~vVaFSPdG~lLaSg---- 1662 (1922)
...++|+ |+|++++++. ..+++|.+||..+.+.+.++.-........ .| ....+.+++++..++..
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n--~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGA--YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEE--EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CceeEEccccCCCCCEEEEEE--ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 3789999 6999988873 456999999999999988875211100000 01 22337778887655533
Q ss_pred c--EEEEcCCCcc--eeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcC-----CCceeEE-EccC
Q 000177 1663 G--ILWDRRNSVP--VHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPS-----LDQTTIT-FNAR 1726 (1922)
Q Consensus 1663 g--rLWDlrtgk~--I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~g-----H~~~sVa-FSPd 1726 (1922)
+ .++|..+.+. +..+......-.+.|+|+|++++++. .+||+.+++++..++- |...... ++|+
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~ 399 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT 399 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred CeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCC
Confidence 2 5666655432 22332222222789999999988776 3999999999888764 3223333 5887
Q ss_pred CCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC-------CceeeeeccCC-ceEEEEEcCCCceEEEEecCCC
Q 000177 1727 GDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN-------YSDIATIPVDR-CVLDFATERTDSFVGLITMDDQ 1798 (1922)
Q Consensus 1727 G~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d-------ys~IaTidvkr-~I~dLa~SPdds~LAVVe~dds 1798 (1922)
+..+++...-. ...+.+++..+ ++.+.++.... .-..+..+|+++++.|-.....
T Consensus 400 ~g~v~~t~~~g-----------------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~ 462 (567)
T 1qks_A 400 FGPVWATSHMG-----------------DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP 462 (567)
T ss_dssp TEEEEEEEBSS-----------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS
T ss_pred CCcEEEeCCCC-----------------CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCC
Confidence 55555442211 13455666554 67777777643 2355778999998887531110
Q ss_pred C-CccceEEEEEecC
Q 000177 1799 E-DMFSSARIYEIGR 1812 (1922)
Q Consensus 1799 ~-d~dSsVRLyEVGr 1812 (1922)
+ +....|.++++..
T Consensus 463 ~~~~~~~v~v~d~~~ 477 (567)
T 1qks_A 463 EAEISGSVAVFDIKA 477 (567)
T ss_dssp SHHHHTCEEEEEGGG
T ss_pred CcccCceEEEEECCc
Confidence 1 1135677887643
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.03 E-value=2.4e-08 Score=117.34 Aligned_cols=249 Identities=9% Similarity=0.029 Sum_probs=163.3
Q ss_pred CCCcEEEEECCCCCceeeec------cCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEecc---ceeE
Q 000177 1529 HTKELKIFDSNSSSPLESCT------SHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEG---CKAA 1598 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~------gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~g---h~sV 1598 (1922)
.+++|.+||..+++....+. ........+ .+. +++++++ ..+++|.+||..+ ++.+.++.. .+.+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i--~~~-~~~lyv~~~~~~~v~viD~~t--~~~~~~i~~~~~p~~i 89 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSM--VIR-DGIGWIVVNNSHVIFAIDINT--FKEVGRITGFTSPRYI 89 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEE--EEE-TTEEEEEEGGGTEEEEEETTT--CCEEEEEECCSSEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEE--EEE-CCEEEEEEcCCCEEEEEECcc--cEEEEEcCCCCCCcEE
Confidence 48999999999988765541 122345677 554 3445555 4589999999998 777777653 4789
Q ss_pred EEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec---c---EEEEcCCCc
Q 000177 1599 RFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN---G---ILWDRRNSV 1672 (1922)
Q Consensus 1599 aFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg---g---rLWDlrtgk 1672 (1922)
+|+++++.+++. ..++.|.+||..+++...++..... ....+....+++ .++.+++++ + .+||+.+++
T Consensus 90 ~~~~~g~lyv~~---~~~~~v~~iD~~t~~~~~~i~~g~~--~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 90 HFLSDEKAYVTQ---IWDYRIFIINPKTYEITGYIECPDM--DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEETTEEEEEE---BSCSEEEEEETTTTEEEEEEECTTC--CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTE
T ss_pred EEeCCCeEEEEE---CCCCeEEEEECCCCeEEEEEEcCCc--cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCe
Confidence 999998655554 3689999999999988877751110 000002222666 556666653 2 799999999
Q ss_pred ceeeeccCCCceEEEEecCCCEEEEEe---------------EEEecCCCeEEEEEcC---CCceeEEEccCCCEEEEEE
Q 000177 1673 PVHRFDQFTDHGGGGFHPAGNEVIINS---------------EVWDLRKFRLLRSVPS---LDQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1673 ~I~kf~gh~~~VsVaFSPdG~~LASGS---------------eIWDLrTgklL~tl~g---H~~~sVaFSPdG~~LaSgs 1734 (1922)
.+.++........+.++|+|++++++. .+||..++++..++.- ...+.++|+|+|+.|+.+.
T Consensus 164 ~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 164 VVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred EEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence 888887655555889999999777652 2788889998877763 2348999999999999872
Q ss_pred ccCchhhhhhhcccccccCCcceEEEEecCCCceee--eecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEe
Q 000177 1735 RRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIA--TIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1735 ~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~Ia--Tidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
. .+..+|..+.+.+. .+.. ......++++|++..+.+....+. .....|.+|+.
T Consensus 244 ~---------------------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y-~~~~~V~v~d~ 300 (328)
T 3dsm_A 244 N---------------------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDY-QQQGIVYRYSP 300 (328)
T ss_dssp S---------------------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTS-SSEEEEEEECT
T ss_pred c---------------------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccc-ccCCEEEEECC
Confidence 1 23445554433221 1111 345788999997777776642111 11245666653
No 185
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.03 E-value=2.9e-08 Score=116.66 Aligned_cols=206 Identities=11% Similarity=0.036 Sum_probs=144.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l 1589 (1922)
....+.+. ++++.++...++.|.+||..+++.+.++.. ......+ +++++++++++. .++.|.+||..+ ++..
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i--~~~~~g~lyv~~~~~~~v~~iD~~t--~~~~ 118 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYI--HFLSDEKAYVTQIWDYRIFIINPKT--YEIT 118 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEE--EEEETTEEEEEEBSCSEEEEEETTT--TEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEE--EEeCCCeEEEEECCCCeEEEEECCC--CeEE
Confidence 46777774 345556666689999999999999888853 4567888 788888777776 689999999987 5555
Q ss_pred eEec---------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1590 HSFE---------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1590 ~tf~---------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
.++. ....+++ ++..++.+.. +.+++|.+||+.+++.+.++. .+.....+.++|+|++++
T Consensus 119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~-~~~~~v~viD~~t~~~~~~i~--------~g~~p~~i~~~~dG~l~v 187 (328)
T 3dsm_A 119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCW-SYQNRILKIDTETDKVVDELT--------IGIQPTSLVMDKYNKMWT 187 (328)
T ss_dssp EEEECTTCCTTTCBCCCEEE--ETTEEEEEEC-TTCCEEEEEETTTTEEEEEEE--------CSSCBCCCEECTTSEEEE
T ss_pred EEEEcCCccccCCCcceEEE--ECCEEEEEcC-CCCCEEEEEECCCCeEEEEEE--------cCCCccceEEcCCCCEEE
Confidence 5543 2346777 3444444411 147899999999999888775 122233488999999877
Q ss_pred ec-------------c--EEEEcCCCcceeeeccCC--CceEEEEecCCCEEEEEe---EEEecCCCeEEEE--EcC--C
Q 000177 1661 WN-------------G--ILWDRRNSVPVHRFDQFT--DHGGGGFHPAGNEVIINS---EVWDLRKFRLLRS--VPS--L 1716 (1922)
Q Consensus 1661 Sg-------------g--rLWDlrtgk~I~kf~gh~--~~VsVaFSPdG~~LASGS---eIWDLrTgklL~t--l~g--H 1716 (1922)
++ + .+||..+++.+..+.... .+..++|+|++++|.+.. .+||..+++.... +.. .
T Consensus 188 ~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~~v~~~d~~t~~~~~~~~~~~~~~ 267 (328)
T 3dsm_A 188 ITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDT 267 (328)
T ss_dssp EBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESSSEEEEETTCSSCCSSCSBCCCSS
T ss_pred EECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEccEEEEEECCCCceeeeeeecCCCC
Confidence 43 3 688988888777775432 344999999999887765 3788887775421 221 2
Q ss_pred CceeEEEccCCCEEEEE
Q 000177 1717 DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1717 ~~~sVaFSPdG~~LaSg 1733 (1922)
....++++|++..|+.+
T Consensus 268 ~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp CEEEEEECTTTCCEEEE
T ss_pred ceEEEEEcCCCCeEEEE
Confidence 22789999966666655
No 186
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.02 E-value=2.6e-08 Score=116.56 Aligned_cols=180 Identities=13% Similarity=0.109 Sum_probs=132.1
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-ceeee---------ccCCCCeeEEEeeecC-CCcEEEEe--c
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-PLESC---------TSHQAPVTLVQSHLSG-ETQLLLSS--S 1572 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-~l~tL---------~gHss~VtsLq~afSp-DG~lLaSS--s 1572 (1922)
++. .....++|+++|+++++.+.++.|++||..... .+.++ .++-...+.| +++| ++.++++. .
T Consensus 88 ~~~-~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i--a~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 88 NLF-YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV--AVEPSTGAVFVSDGYC 164 (329)
T ss_dssp TTC-SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE--EECTTTCCEEEEECSS
T ss_pred Ccc-CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE--EEeCCCCeEEEEeCCC
Confidence 354 678999999999999999999999999985442 55555 3455578899 8999 89998885 4
Q ss_pred CCcEEEeccCCCCCCcceEec--------------cceeEEEcCC-CCEEEEeecCCCCCeEEEEECCCCceeeeecccc
Q 000177 1573 SQDVHLWNASSIAGGPMHSFE--------------GCKAARFSNS-GNLFAALPTETSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~--------------gh~sVaFSPD-G~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
++.|++||.. +..+..+. ..+.++|+|+ ++.+++. ..++.|++||..+++.+.++..+
T Consensus 165 ~~~I~~~~~~---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d---~~~~~I~~~~~~~G~~~~~~~~~- 237 (329)
T 3fvz_A 165 NSRIVQFSPS---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD---RENGRIQCFKTDTKEFVREIKHA- 237 (329)
T ss_dssp CCEEEEECTT---SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE---TTTTEEEEEETTTCCEEEEECCT-
T ss_pred CCeEEEEcCC---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE---CCCCEEEEEECCCCcEEEEEecc-
Confidence 8999999953 56565553 1478999998 6666665 77899999999999988887511
Q ss_pred ccccCCCCcceEEEEcC------CCCeEeecc-----EEEEcCCCcceeeec---cCCCce-EEEEecCCCEEEEEe
Q 000177 1638 VNLTGRGHAYSQIHFSP------SDTMLLWNG-----ILWDRRNSVPVHRFD---QFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSP------dG~lLaSgg-----rLWDlrtgk~I~kf~---gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
..+.....++|+| +|+.++++. ++||+.+++.+..+. .+.... .++|+|+|..+++..
T Consensus 238 ----~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 238 ----SFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA 310 (329)
T ss_dssp ----TTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES
T ss_pred ----ccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC
Confidence 1223334588888 444333322 799999999998884 333434 999999996666654
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.02 E-value=6.5e-08 Score=125.10 Aligned_cols=263 Identities=8% Similarity=-0.009 Sum_probs=157.9
Q ss_pred CCCCEEEEEeCCC-----cEEEEECCCCCceeee------ccCCCCeeEEEeeecCCCcEEEEe-c-CC----cEEEecc
Q 000177 1519 GDSSHIAVGSHTK-----ELKIFDSNSSSPLESC------TSHQAPVTLVQSHLSGETQLLLSS-S-SQ----DVHLWNA 1581 (1922)
Q Consensus 1519 PDG~lLASGS~DG-----tIkIWDl~tgk~l~tL------~gHss~VtsLq~afSpDG~lLaSS-s-Dg----tVkLWDl 1581 (1922)
|+|++++....++ .|.+.+...++....+ .+|...+..+ .|||||++|+.+ + .| +|++||+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~--~~SPDg~~la~~~~~~G~~~~~i~v~d~ 158 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGY--AFSEDGEYFAYGLSASGSDWVTIKFMKV 158 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEE--EECTTSSEEEEEEEETTCSCEEEEEEET
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEE--EECCCCCEEEEEEcCCCCceEEEEEEEC
Confidence 6666665444322 3333444344432222 2354557777 899999999874 2 22 8999999
Q ss_pred CCCCCCcce-Eecc--ceeEEEcCCCCEEEEeecCCC-------------CCeEEEEECCCCcee--eeeccccccccCC
Q 000177 1582 SSIAGGPMH-SFEG--CKAARFSNSGNLFAALPTETS-------------DRGILLYDIQTYQLE--AKLSDTSVNLTGR 1643 (1922)
Q Consensus 1582 ~t~~gk~l~-tf~g--h~sVaFSPDG~~LaSgS~~S~-------------DgtIrIWDlrTgk~i--~tL~d~s~~~~~~ 1643 (1922)
.+ ++.+. ++.. ...++|+|||+.|+.++.... ...|++|++.+++.. ..+. ..
T Consensus 159 ~t--g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~-------~~ 229 (710)
T 2xdw_A 159 DG--AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE-------FP 229 (710)
T ss_dssp TT--TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC-------CT
T ss_pred CC--CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec-------cC
Confidence 87 55543 2222 367999999999998843322 234999999987632 2222 11
Q ss_pred CCcc--eEEEEcCCCCeEeecc----------EEEEcCC------Cc-ceeeeccCCCceEEEEecCCCEEEEEe-----
Q 000177 1644 GHAY--SQIHFSPSDTMLLWNG----------ILWDRRN------SV-PVHRFDQFTDHGGGGFHPAGNEVIINS----- 1699 (1922)
Q Consensus 1644 gh~~--~vVaFSPdG~lLaSgg----------rLWDlrt------gk-~I~kf~gh~~~VsVaFSPdG~~LASGS----- 1699 (1922)
.+.. ..+.|+|+|++|+..+ .+||+.+ +. .+..+..+...+...|+|+|..|+..+
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCT
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCC
Confidence 2332 3489999999887321 7889886 53 466676666666556999999887665
Q ss_pred --E--EEecCCCe--EEEEEcCC-C---ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCcee
Q 000177 1700 --E--VWDLRKFR--LLRSVPSL-D---QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDI 1769 (1922)
Q Consensus 1700 --e--IWDLrTgk--lL~tl~gH-~---~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~I 1769 (1922)
+ +||+.++. ..+.+..+ . ...+.|++++.++++...+.. ..+.+++..+.+.+
T Consensus 310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~-----------------~~l~~~~~~~g~~~ 372 (710)
T 2xdw_A 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK-----------------NTLQLHDLATGALL 372 (710)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE-----------------EEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE-----------------EEEEEEECCCCCEE
Confidence 2 67887764 12334333 3 157889877666666632221 22344554333333
Q ss_pred eeecc-CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1770 ATIPV-DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1770 aTidv-kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+.. ...+..++++|++..+.+.-... .....+.+|++.
T Consensus 373 ~~l~~~~~~v~~~~~s~d~~~l~~~~ss~--~~P~~i~~~d~~ 413 (710)
T 2xdw_A 373 KIFPLEVGSVVGYSGQKKDTEIFYQFTSF--LSPGIIYHCDLT 413 (710)
T ss_dssp EEECCCSSEEEEEECCTTCSEEEEEEECS--SCCCEEEEEETT
T ss_pred EecCCCCceEEEEecCCCCCEEEEEEeCC--CCCCEEEEEECC
Confidence 44433 34578889999887776553222 223567777764
No 188
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.99 E-value=3.6e-08 Score=110.02 Aligned_cols=208 Identities=7% Similarity=-0.058 Sum_probs=135.7
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
...+++++++|++++ +.+.++.|.+||..++........+...+.+| +++++++++++..++.|.+||... . ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i--~~~~~g~l~v~~~~~~i~~~d~~~--~-~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGL--AVDGAGTVYVTDFNNRVVTLAAGS--N-NQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCE--EECTTCCEEEEETTTEEEEECTTC--S-CC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCccee--EECCCCCEEEEcCCCEEEEEeCCC--c-eE
Confidence 578999999999777 55788999999986654433223344567888 789999988886688999999875 2 22
Q ss_pred eEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-
Q 000177 1590 HSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG- 1663 (1922)
Q Consensus 1590 ~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg- 1663 (1922)
..+ .....++++++|+.+++. ..++.|.+||..+........ ........++++|+|+++++..
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~---~~~~~i~~~~~~~~~~~~~~~-------~~~~~p~~i~~~~~g~l~v~~~~ 169 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVAD---RGNNRVVKLAAGSKTQTVLPF-------TGLNDPDGVAVDNSGNVYVTDTD 169 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEE---GGGTEEEEECTTCCSCEECCC-------CSCCSCCCEEECTTCCEEEEEGG
T ss_pred eeeecCCcCCCcceEECCCCCEEEEE---CCCCEEEEEECCCceeEeecc-------ccCCCceeEEEeCCCCEEEEECC
Confidence 322 234789999999977776 556889999866544322111 0111233499999999887653
Q ss_pred ----EEEEcCCCcceeeeccC-CCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC-Cc-eeEEEccCCCEEE
Q 000177 1664 ----ILWDRRNSVPVHRFDQF-TDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL-DQ-TTITFNARGDVIY 1731 (1922)
Q Consensus 1664 ----rLWDlrtgk~I~kf~gh-~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH-~~-~sVaFSPdG~~La 1731 (1922)
.+||...+......... ....+++++++|..+++.. .+||..+.........+ .. ..++++|+|++++
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEE
T ss_pred CCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEE
Confidence 78887765543322222 2333899999997777663 37787654433222122 22 7999999998555
Q ss_pred EE
Q 000177 1732 AI 1733 (1922)
Q Consensus 1732 Sg 1733 (1922)
+.
T Consensus 250 ~~ 251 (270)
T 1rwi_B 250 AD 251 (270)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 189
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.97 E-value=3.8e-08 Score=112.06 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=140.5
Q ss_pred CCEEEEEEcCCCCEEEE-------EeCCCcEEEEECCCCCceeeec----cCCCCeeEEEeeecCC-CcEEEEecCCcEE
Q 000177 1510 ALLTCITFLGDSSHIAV-------GSHTKELKIFDSNSSSPLESCT----SHQAPVTLVQSHLSGE-TQLLLSSSSQDVH 1577 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLAS-------GS~DGtIkIWDl~tgk~l~tL~----gHss~VtsLq~afSpD-G~lLaSSsDgtVk 1577 (1922)
....+++|+++|.++++ ++.++.|.+||..+++...... ++...+.++ .++++ +++++++....|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i--~~~~~~g~l~v~~~~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGC--QCDRDANQLFVADMRLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEE--EECSSSSEEEEEETTTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceE--EEecCCCcEEEEECCCCEE
Confidence 45789999999998888 6788999999988877543222 255678888 88999 8888877656788
Q ss_pred EeccCCCCCCcceE-e--------ccceeEEEcCCCCEEEEeecCCCC---------------CeEEEEECCCCceeeee
Q 000177 1578 LWNASSIAGGPMHS-F--------EGCKAARFSNSGNLFAALPTETSD---------------RGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1578 LWDl~t~~gk~l~t-f--------~gh~sVaFSPDG~~LaSgS~~S~D---------------gtIrIWDlrTgk~i~tL 1633 (1922)
+||.. ++.... . ...++++++++|+.+++. ..+ +.|..||.. ++.....
T Consensus 96 ~~d~~---g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 96 VVQTD---GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITA---PAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp EEETT---SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEE---CBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred EEeCC---CCEEEEEeccCCCccccCCcCEEECCCCCEEEEe---cCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 99876 222111 1 124789999999988776 333 567777765 5443322
Q ss_pred ccccccccCCCCcceEEEEc----CCCCeE-eecc-----EEEEcC-CCc-----ceeeeccCC-Cce-EEEEecCCCEE
Q 000177 1634 SDTSVNLTGRGHAYSQIHFS----PSDTML-LWNG-----ILWDRR-NSV-----PVHRFDQFT-DHG-GGGFHPAGNEV 1695 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFS----PdG~lL-aSgg-----rLWDlr-tgk-----~I~kf~gh~-~~V-sVaFSPdG~~L 1695 (1922)
. .......++|+ |+++.+ ++.. .+||+. +++ ....+..+. ... .++++++|+..
T Consensus 169 ~--------~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 240 (314)
T 1pjx_A 169 T--------AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLL 240 (314)
T ss_dssp E--------EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEE
T ss_pred c--------CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEE
Confidence 2 01123448899 999644 4432 678876 443 223333332 333 89999999988
Q ss_pred EEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEEE
Q 000177 1696 IINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1696 ASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSgs 1734 (1922)
++.. .+||..+++.+..+..+.. .+++|+|+|+.|+.+.
T Consensus 241 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~ 286 (314)
T 1pjx_A 241 VANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE 286 (314)
T ss_dssp EEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe
Confidence 7753 4888887777666664433 7999999999777664
No 190
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.95 E-value=8.4e-08 Score=116.86 Aligned_cols=264 Identities=12% Similarity=0.013 Sum_probs=172.4
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccC-------CCCee
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSH-------QAPVT 1555 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gH-------ss~Vt 1555 (1922)
+...+++.+.++.--. .+ . ++++|||++|++++ .++.|.+||..+++.+.++.-. ...-.
T Consensus 64 iD~~t~~v~~~I~vG~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 64 IDGEAGRVIGMIDGGF-LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EETTTTEEEEEEEECS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG
T ss_pred EECCCCeEEEEEECCC-CC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc
Confidence 3445677777776433 44 4 99999999888776 3678999999999988877421 12345
Q ss_pred EEEeeecCCCcEEEEe--c-CCcEEEeccCCCCCCcceEeccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCC-Ccee
Q 000177 1556 LVQSHLSGETQLLLSS--S-SQDVHLWNASSIAGGPMHSFEGCKAARFSN-SGNLFAALPTETSDRGILLYDIQT-YQLE 1630 (1922)
Q Consensus 1556 sLq~afSpDG~lLaSS--s-DgtVkLWDl~t~~gk~l~tf~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrT-gk~i 1630 (1922)
.+ .|+|||+++..+ . +++|.++|+.+ ++.+.++.--.|..+.| ..+.|++. +.||++.++++.+ ++..
T Consensus 141 ~~--a~spDGk~lyVan~~~~~~VsVID~~t--~~vv~tI~v~g~~~~~P~g~~~~~~~---~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 141 MT--SLTPDGKTLLFYQFSPAPAVGVVDLEG--KAFKRMLDVPDCYHIFPTAPDTFFMH---CRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp GE--EECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSEEEEEEEETTEEEEE---ETTSCEEEEECCSSSCCE
T ss_pred eE--EEcCCCCEEEEEEcCCCCeEEEEECCC--CcEEEEEECCCcceeecCCCceeEEE---CCCCCEEEEECCCCCeEE
Confidence 56 789999987764 2 68999999998 77777774322323334 34566665 6688888888876 5543
Q ss_pred eeeccccccccCCCCcceEEEE-cCCCCeE-eecc---EEEEcCCCc--ceeeecc-----------CCCceEEEEecCC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHF-SPSDTML-LWNG---ILWDRRNSV--PVHRFDQ-----------FTDHGGGGFHPAG 1692 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaF-SPdG~lL-aSgg---rLWDlrtgk--~I~kf~g-----------h~~~VsVaFSPdG 1692 (1922)
.+.. ........+......| .++|+++ ++.+ .+.|+.++. .+.++.- ......+.++|++
T Consensus 214 ~~~~--~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~ 291 (386)
T 3sjl_D 214 ITHT--EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 291 (386)
T ss_dssp EEEC--CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTT
T ss_pred Eeec--ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCC
Confidence 3221 0000001111111455 4777654 4444 677876553 3444431 1111257789998
Q ss_pred CEEEEE-------------eE--EEecCCCeEEEEEcC-CCceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCc
Q 000177 1693 NEVIIN-------------SE--VWDLRKFRLLRSVPS-LDQTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLF 1755 (1922)
Q Consensus 1693 ~~LASG-------------Se--IWDLrTgklL~tl~g-H~~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ 1755 (1922)
+.+... .+ +.|+.+++.+++++- +..+.+.|+++|+ .||++.. ..
T Consensus 292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~------------------~~ 353 (386)
T 3sjl_D 292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST------------------GD 353 (386)
T ss_dssp TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET------------------TT
T ss_pred CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC------------------CC
Confidence 877664 23 668999999999873 3448999999997 7887632 23
Q ss_pred ceEEEEecCCCceeeeeccCCceEEEEEcCC
Q 000177 1756 AAFRTVDAINYSDIATIPVDRCVLDFATERT 1786 (1922)
Q Consensus 1756 ssFrt~Da~dys~IaTidvkr~I~dLa~SPd 1786 (1922)
..+.++|..+++.+.+++....-..+.++++
T Consensus 354 ~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 354 KTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 5678899999999999988766555665554
No 191
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=98.94 E-value=4.4e-07 Score=102.70 Aligned_cols=221 Identities=14% Similarity=0.201 Sum_probs=145.6
Q ss_pred cCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCCcceEec----------cceeEEE-cCCCCEEEEeecCC-C
Q 000177 1549 SHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGGPMHSFE----------GCKAARF-SNSGNLFAALPTET-S 1615 (1922)
Q Consensus 1549 gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~----------gh~sVaF-SPDG~~LaSgS~~S-~ 1615 (1922)
+|-..+.+| +++++++++++. .++.|.+||.. ++.+..+. ....++| .++++.+++. . .
T Consensus 27 g~~~~p~~v--~~~~~g~l~v~~~~~~~i~~~d~~---g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~---~~~ 98 (286)
T 1q7f_A 27 GQFTEPSGV--AVNAQNDIIVADTNNHRIQIFDKE---GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE---RSP 98 (286)
T ss_dssp TCBSCEEEE--EECTTCCEEEEEGGGTEEEEECTT---SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE---CGG
T ss_pred CccCCCceE--EECCCCCEEEEECCCCEEEEECCC---CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEc---CCC
Confidence 455678888 889999988885 58999999976 34455542 2367889 4677776665 3 2
Q ss_pred CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeecc--CCCce-EEE
Q 000177 1616 DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQ--FTDHG-GGG 1687 (1922)
Q Consensus 1616 DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~g--h~~~V-sVa 1687 (1922)
++.|.+|| .+++.+..+.. ........++++|+|++++++. .+||. .++.+..+.. +.... .++
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGA------TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECT------TTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEE
T ss_pred CCEEEEEC-CCCcEEEEecC------ccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEE
Confidence 68899999 56777666641 1112334599999999888754 77884 4666666642 22334 899
Q ss_pred EecCCCEEEEEe-----EEEecCCCeEEEEEcCCC----ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceE
Q 000177 1688 FHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD----QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAF 1758 (1922)
Q Consensus 1688 FSPdG~~LASGS-----eIWDLrTgklL~tl~gH~----~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssF 1758 (1922)
++|+|+.+++.+ .+||. +++.+.++..+. ...++++|+|+++++....+ ..+
T Consensus 171 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~------------------~~i 231 (286)
T 1q7f_A 171 VNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN------------------FNL 231 (286)
T ss_dssp ECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS------------------CEE
T ss_pred ECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC------------------EEE
Confidence 999999777765 48897 467777776432 27999999998777763221 123
Q ss_pred EEEecCCCceeeeecc---CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEecC
Q 000177 1759 RTVDAINYSDIATIPV---DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIGR 1812 (1922)
Q Consensus 1759 rt~Da~dys~IaTidv---kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVGr 1812 (1922)
..|+. +...+.++.. ...+.+++++|++..++ .. .+..+++|+...
T Consensus 232 ~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~v-s~------~~~~v~v~~~~~ 280 (286)
T 1q7f_A 232 TIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-AS------KDYRLYIYRYVQ 280 (286)
T ss_dssp EEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EE------TTTEEEEEECSC
T ss_pred EEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEE-EC------CCCeEEEEEccc
Confidence 44442 2223333322 22477899999987443 32 136799998643
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.94 E-value=6.1e-07 Score=108.35 Aligned_cols=252 Identities=11% Similarity=-0.005 Sum_probs=161.0
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccC-------CCCee
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSH-------QAPVT 1555 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gH-------ss~Vt 1555 (1922)
+....++.+.++..-. .+ .++|||||++|+++. .++.|.+||..+.+.+.++.-- ...-.
T Consensus 52 ~D~~t~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~ 128 (373)
T 2mad_H 52 LDAGSGSILGHVNGGF-LP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW 128 (373)
T ss_pred EECCCCeEEEEecCCC-CC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc
Confidence 3344566666666433 33 899999999999886 3678999999988887766321 12234
Q ss_pred EEEeeecCCCcEEEEec---CCcEEEeccCCCCCCcceE-eccceeEEEcCCCC-EEEEeecCCCCCeEEEEECCCCcee
Q 000177 1556 LVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMHS-FEGCKAARFSNSGN-LFAALPTETSDRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1556 sLq~afSpDG~lLaSSs---DgtVkLWDl~t~~gk~l~t-f~gh~sVaFSPDG~-~LaSgS~~S~DgtIrIWDlrTgk~i 1630 (1922)
.+ .|+|||++|+.+. +++|.++| .+ ++.+.+ +.--.++.+.|+++ .+++. +.|+.+.+||. +++.+
T Consensus 129 ~~--~~spDG~~l~v~n~~~~~~v~viD-~t--~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~dg~~~~vd~-~g~~~ 199 (373)
T 2mad_H 129 MN--ANTPNNADLLFFQFAAGPAVGLVV-QG--GSSDDQLLSSPTCYHIHPGAPSTFYLL---CAQGGLAKTDH-AGGAA 199 (373)
T ss_pred ce--EECCCCCEEEEEecCCCCeEEEEE-CC--CCEEeEEcCCCceEEEEeCCCceEEEE---cCCCCEEEEEC-CCcEE
Confidence 66 8899999988742 57899999 87 777777 65445566777664 44554 67899999999 88776
Q ss_pred eeeccccccccCCCCcceEEEEcCCCCeEe--ecc---EEEEcCCCc--ceeeeccCC----------Cce-EEEEecCC
Q 000177 1631 AKLSDTSVNLTGRGHAYSQIHFSPSDTMLL--WNG---ILWDRRNSV--PVHRFDQFT----------DHG-GGGFHPAG 1692 (1922)
Q Consensus 1631 ~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa--Sgg---rLWDlrtgk--~I~kf~gh~----------~~V-sVaFSPdG 1692 (1922)
......... ...........|.+++..++ +.+ .+.|+..+. .+..+.-.. ... .+.|+|++
T Consensus 200 ~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~ 278 (373)
T 2mad_H 200 GAGLVGAML-TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS 278 (373)
T ss_pred EEEeccccc-cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCC
Confidence 433200000 00111111145566554322 222 566665442 223332111 111 37899999
Q ss_pred CEEEEEe-------------E--EEecCCCeEEEEEcCCC-ceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCc
Q 000177 1693 NEVIINS-------------E--VWDLRKFRLLRSVPSLD-QTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLF 1755 (1922)
Q Consensus 1693 ~~LASGS-------------e--IWDLrTgklL~tl~gH~-~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~ 1755 (1922)
+.+.+.. + ++|+.+++.+.+++... .+.+.|+|+|+ .++++.. ..
T Consensus 279 ~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~------------------~~ 340 (373)
T 2mad_H 279 DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA------------------GT 340 (373)
T ss_pred CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC------------------CC
Confidence 8776631 3 56999999999997443 48999999999 6777621 12
Q ss_pred ceEEEEecCCCceeee-eccC
Q 000177 1756 AAFRTVDAINYSDIAT-IPVD 1775 (1922)
Q Consensus 1756 ssFrt~Da~dys~IaT-idvk 1775 (1922)
..+.++|..+++.+.+ +.+.
T Consensus 341 ~~V~ViD~~t~~vv~~i~~vG 361 (373)
T 2mad_H 341 EVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred CeEEEEECCCCCEEeeecCCC
Confidence 4578889888888877 4443
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.93 E-value=1.6e-08 Score=130.66 Aligned_cols=212 Identities=12% Similarity=0.032 Sum_probs=132.5
Q ss_pred CCCCCCEEEEEEcCCCCEEE-----EEeCCCcEEEEECCCCCce-eeeccCCCCe--eEEEeeecCCCcEEEEe-cCCc-
Q 000177 1506 DDAGALLTCITFLGDSSHIA-----VGSHTKELKIFDSNSSSPL-ESCTSHQAPV--TLVQSHLSGETQLLLSS-SSQD- 1575 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLA-----SGS~DGtIkIWDl~tgk~l-~tL~gHss~V--tsLq~afSpDG~lLaSS-sDgt- 1575 (1922)
+|. ..+..++|||||++|+ .|+.+.+|++||+.+++.+ .. +...+ ..+ +|+|||+.|+.+ .|..
T Consensus 118 ~~~-~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~---~~~~~~~~~~--~wspDg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 118 DGT-VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD---VIEGGKYATP--KWTPDSKGFYYEWLPTDP 191 (695)
T ss_dssp SSC-EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC---CBSCCTTCCC--EECTTSSEEEEEECCCCT
T ss_pred CCC-EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc---ccCcccccce--EEecCCCEEEEEEecCCC
Confidence 465 6799999999999998 4555678999999999865 22 21222 566 899999988874 4554
Q ss_pred ------------EEEeccCCCCCCcceEec--c----ceeEEEcCCCCEEEEeecCC-CCCeEEEEECCCCceeeeeccc
Q 000177 1576 ------------VHLWNASSIAGGPMHSFE--G----CKAARFSNSGNLFAALPTET-SDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1576 ------------VkLWDl~t~~gk~l~tf~--g----h~sVaFSPDG~~LaSgS~~S-~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
|++|++.+........+. . ...+.|+|||++|+.++..+ ....|++||..++.......
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~-- 269 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVK-- 269 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEE--
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeec--
Confidence 999999872111122232 2 36789999999988873322 22367777766554333222
Q ss_pred cccccCCCCcceEEEEcCCCCeEeecc--------EEEEcCCCcc--eeeeccC--CCce-EEEEecCCCEEEEEe----
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLLWNG--------ILWDRRNSVP--VHRFDQF--TDHG-GGGFHPAGNEVIINS---- 1699 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLaSgg--------rLWDlrtgk~--I~kf~gh--~~~V-sVaFSPdG~~LASGS---- 1699 (1922)
.........| ++|.+++... .+||+.++.. ...+..+ ...+ .+.|+ ++..+++..
T Consensus 270 ------~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 270 ------GVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT 341 (695)
T ss_dssp ------CSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE
T ss_pred ------CCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE
Confidence 1111222344 5666444321 7888877653 2333333 2334 67887 666666665
Q ss_pred -EEEecC-CCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1700 -EVWDLR-KFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 -eIWDLr-TgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
+||.+. +++.++.+..+.. ..+.|+|+++.++..
T Consensus 342 ~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 380 (695)
T 2bkl_A 342 SEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYV 380 (695)
T ss_dssp EEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEE
T ss_pred EEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEE
Confidence 466554 4666677765422 577889999877744
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.92 E-value=5e-07 Score=103.19 Aligned_cols=220 Identities=7% Similarity=0.040 Sum_probs=142.3
Q ss_pred CCceeeeccCCCCeeEEEeeecCCCc-EEEEe-cCCcEEEeccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCC
Q 000177 1541 SSPLESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQDVHLWNASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTET 1614 (1922)
Q Consensus 1541 gk~l~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgtVkLWDl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S 1614 (1922)
+..+..+..+.....++ .|+|+++ +++++ .++.|..||..+ + ...+.. ..+++|+|+|+++++. .
T Consensus 17 ~~~~~~l~~~~~~~eg~--~~d~~g~~l~~~~~~~~~i~~~~~~~--~--~~~~~~~~~~~~~l~~~~dg~l~v~~---~ 87 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGP--VYVPARSAVIFSDVRQNRTWAWSDDG--Q--LSPEMHPSHHQNGHCLNKQGHLIACS---H 87 (296)
T ss_dssp TCCCEEEECCCSSEEEE--EEEGGGTEEEEEEGGGTEEEEEETTS--C--EEEEESSCSSEEEEEECTTCCEEEEE---T
T ss_pred CCcEEEEecCCccccCC--eEeCCCCEEEEEeCCCCEEEEEECCC--C--eEEEECCCCCcceeeECCCCcEEEEe---c
Confidence 34445555566677888 8899998 66665 588999999986 3 444432 3789999999988876 5
Q ss_pred CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec--------------------cEEEEcCCCcce
Q 000177 1615 SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN--------------------GILWDRRNSVPV 1674 (1922)
Q Consensus 1615 ~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg--------------------grLWDlrtgk~I 1674 (1922)
.++.|.+||..+++......... .......+.++++|+|+++++. +.||.+.....+
T Consensus 88 ~~~~i~~~d~~~g~~~~~~~~~~---~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 164 (296)
T 3e5z_A 88 GLRRLERQREPGGEWESIADSFE---GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL 164 (296)
T ss_dssp TTTEEEEECSTTCCEEEEECEET---TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE
T ss_pred CCCeEEEEcCCCCcEEEEeeccC---CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCE
Confidence 67889999998887644332000 0001123349999999999862 277777653344
Q ss_pred eeeccCCCce-EEEEecCCCEEEEEe-----EEEecC-CCeE---EEEEcCCCc--eeEEEccCCCEEEEEEccCchhhh
Q 000177 1675 HRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLR-KFRL---LRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVM 1742 (1922)
Q Consensus 1675 ~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLr-Tgkl---L~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~ 1742 (1922)
..+..+.... .++|+|+|+.+++.+ .+|++. ++++ ...+..+.. ..++|+++|+++++. .+
T Consensus 165 ~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~----- 237 (296)
T 3e5z_A 165 SAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GD----- 237 (296)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TT-----
T ss_pred EEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CC-----
Confidence 4444444444 899999999886655 378886 5554 334421222 689999999866665 11
Q ss_pred hhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEE-cCCCceEEEEe
Q 000177 1743 SAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFAT-ERTDSFVGLIT 1794 (1922)
Q Consensus 1743 s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~-SPdds~LAVVe 1794 (1922)
.+..|+.. ...+..+.....+..+++ +|++..|.+..
T Consensus 238 --------------~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 238 --------------GVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTV 275 (296)
T ss_dssp --------------EEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEE
T ss_pred --------------eEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEc
Confidence 23344432 334444444333788888 58888888764
No 195
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.88 E-value=1.6e-07 Score=114.43 Aligned_cols=271 Identities=10% Similarity=0.054 Sum_probs=172.5
Q ss_pred EEEcCCCCEEEEEeC-----CCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEE
Q 000177 1515 ITFLGDSSHIAVGSH-----TKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHL 1578 (1922)
Q Consensus 1515 LaFSPDG~lLASGS~-----DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkL 1578 (1922)
....|+++++++... ++.|.++|..+++.+.++..-..+ .+ .++|||+++..+. ++.|.+
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~v--a~spDG~~lyVan~~~~r~~~G~~~~~Vsv 113 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NP--VVADDGSFIAHASTVFSRIARGERTDYVEV 113 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EE--EECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cE--EECCCCCEEEEEcccccccccCCCCCEEEE
Confidence 445789998888776 689999999999999888644445 37 8899999776532 568999
Q ss_pred eccCCCCCCcceEec-----------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcc
Q 000177 1579 WNASSIAGGPMHSFE-----------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAY 1647 (1922)
Q Consensus 1579 WDl~t~~gk~l~tf~-----------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~ 1647 (1922)
||..+ .+.+.++. ..+.+.|+|||++++.+.. ..++.|.++|+.+++.+.++.-+...........
T Consensus 114 iD~~t--~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~-~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~ 190 (386)
T 3sjl_D 114 FDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF-SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPD 190 (386)
T ss_dssp ECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETT
T ss_pred EECCC--CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEc-CCCCeEEEEECCCCcEEEEEECCCcceeecCCCc
Confidence 99998 77766653 1367999999999887621 2368999999999999998862110000000011
Q ss_pred eEEEEcCCCCeEeeccEEEEcCC-Cccee----eeccCCCce--EEEEe-cCCCEEEEEe--E--EEecCCCe--EEEEE
Q 000177 1648 SQIHFSPSDTMLLWNGILWDRRN-SVPVH----RFDQFTDHG--GGGFH-PAGNEVIINS--E--VWDLRKFR--LLRSV 1713 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSggrLWDlrt-gk~I~----kf~gh~~~V--sVaFS-PdG~~LASGS--e--IWDLrTgk--lL~tl 1713 (1922)
..+++++||++++. ++.+ ++.+. .|......+ ...|. ++|+++.... + +.|+.+.. .+..+
T Consensus 191 ~~~~~~~DG~~~~v-----~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~ 265 (386)
T 3sjl_D 191 TFFMHCRDGSLAKV-----AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV 265 (386)
T ss_dssp EEEEEETTSCEEEE-----ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred eeEEECCCCCEEEE-----ECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecce
Confidence 12466777776653 3322 22211 111111222 34664 6776444332 2 66775543 33333
Q ss_pred c---------C---CCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEE
Q 000177 1714 P---------S---LDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDF 1781 (1922)
Q Consensus 1714 ~---------g---H~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dL 1781 (1922)
. + .....++++|++..+|...+...+.. ...-.+.+.++|..+++.+.++.+...++.+
T Consensus 266 ~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~---------hk~~~~~V~viD~~t~kv~~~i~vg~~~~~l 336 (386)
T 3sjl_D 266 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR---------HKTASRFVVVLDAKTGERLAKFEMGHEIDSI 336 (386)
T ss_dssp ESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC---------TTSCEEEEEEEETTTCCEEEEEEEEEEECEE
T ss_pred eccccccccccccCCCcceeeECCCCCeEEEEeccccccc---------cCCCCCEEEEEECCCCeEEEEEECCCCcceE
Confidence 2 0 11136888999999999854321110 0112356889999999999999999999999
Q ss_pred EEcCCCc-eEEEEecCCCCCccceEEEEEec
Q 000177 1782 ATERTDS-FVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1782 a~SPdds-~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+++++++ .+.+... ....+.+++..
T Consensus 337 avs~D~~~~ly~tn~-----~~~~VsViD~~ 362 (386)
T 3sjl_D 337 NVSQDEKPLLYALST-----GDKTLYIHDAE 362 (386)
T ss_dssp EECSSSSCEEEEEET-----TTTEEEEEETT
T ss_pred EECCCCCeEEEEEcC-----CCCeEEEEECC
Confidence 9999997 4544431 12456667653
No 196
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.88 E-value=1.8e-07 Score=120.72 Aligned_cols=259 Identities=9% Similarity=-0.028 Sum_probs=147.0
Q ss_pred CCCCEEEEEeCCC---cEEEE--ECCCCCceeee------ccCCCCeeEEEeeecCCCcEEEEe-----c-CCcEEEecc
Q 000177 1519 GDSSHIAVGSHTK---ELKIF--DSNSSSPLESC------TSHQAPVTLVQSHLSGETQLLLSS-----S-SQDVHLWNA 1581 (1922)
Q Consensus 1519 PDG~lLASGS~DG---tIkIW--Dl~tgk~l~tL------~gHss~VtsLq~afSpDG~lLaSS-----s-DgtVkLWDl 1581 (1922)
|+|++++....++ .-.|| +...++....+ .+|...+..+ .|||||++|+.+ + +.+|++||+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~--~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTW--AVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEE--EECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEE--EECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 6777777666544 23444 44444433322 2466567777 899999999842 2 468999999
Q ss_pred CCCCCCcc-e-Eeccc--eeEEEcCCCCEEEEeecCCC----------CCeEEEEECCCCcee--eeeccccccccCCCC
Q 000177 1582 SSIAGGPM-H-SFEGC--KAARFSNSGNLFAALPTETS----------DRGILLYDIQTYQLE--AKLSDTSVNLTGRGH 1645 (1922)
Q Consensus 1582 ~t~~gk~l-~-tf~gh--~sVaFSPDG~~LaSgS~~S~----------DgtIrIWDlrTgk~i--~tL~d~s~~~~~~gh 1645 (1922)
.+ ++.+ . .+..+ ..++|+|||+.|+.++.+.. ...|++|++.+++.. ..+. ..++
T Consensus 155 ~t--g~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-------~~~~ 225 (695)
T 2bkl_A 155 DS--GEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE-------RTGD 225 (695)
T ss_dssp TT--CCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC-------CCCC
T ss_pred CC--CCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe-------cCCC
Confidence 87 5543 1 33333 67999999999998833211 223999999987632 2222 1123
Q ss_pred --cceEEEEcCCCCeEeecc---------EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe--------EEEecC
Q 000177 1646 --AYSQIHFSPSDTMLLWNG---------ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS--------EVWDLR 1705 (1922)
Q Consensus 1646 --~~~vVaFSPdG~lLaSgg---------rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS--------eIWDLr 1705 (1922)
....+.|+|+|++|+..+ .+||..+++ ...+..+.... ...| |+|.++++.. .+||+.
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~ 303 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPA 303 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTT
T ss_pred CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCC
Confidence 233489999999887432 445544443 44455544444 6666 5666444332 278887
Q ss_pred CCeE---EEEEcCCCc---eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc--CCc
Q 000177 1706 KFRL---LRSVPSLDQ---TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRC 1777 (1922)
Q Consensus 1706 Tgkl---L~tl~gH~~---~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~ 1777 (1922)
++.. ...+..+.. ..++|+ ++.++++...+... .+..++.. ...+..+.. ...
T Consensus 304 ~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~-----------------~l~~~~~~-g~~~~~l~~~~~~~ 364 (695)
T 2bkl_A 304 KPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATS-----------------EVRVATLK-GKPVRTVQLPGVGA 364 (695)
T ss_dssp BCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEE-----------------EEEEEETT-CCEEEECCCSSSSE
T ss_pred CCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEE-----------------EEEEEeCC-CCeeEEecCCCCeE
Confidence 7653 333443322 567787 55555555322211 12223321 122223332 334
Q ss_pred eEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1778 VLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1778 I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
+..++++|++..+++..... .....+.+|++.
T Consensus 365 v~~~~~s~d~~~l~~~~ss~--~~P~~v~~~d~~ 396 (695)
T 2bkl_A 365 ASNLMGLEDLDDAYYVFTSF--TTPRQIYKTSVS 396 (695)
T ss_dssp ECCCBSCTTCSEEEEEEEET--TEEEEEEEEETT
T ss_pred EEEeecCCCCCEEEEEEcCC--CCCCEEEEEECC
Confidence 67778888887777654222 223567777653
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.87 E-value=1.8e-06 Score=104.19 Aligned_cols=262 Identities=11% Similarity=0.016 Sum_probs=161.2
Q ss_pred EcCCCCEEEEEeC--CC---cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEEec
Q 000177 1517 FLGDSSHIAVGSH--TK---ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHLWN 1580 (1922)
Q Consensus 1517 FSPDG~lLASGS~--DG---tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkLWD 1580 (1922)
..|+++++++... .. +|.+||..+++.+.++.....+ .+ .++|||++|..+. ++.|.+||
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i--~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD 103 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NP--VAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--Ce--EECCCCCEEEEEeccccccccCCCCCeEEEEE
Confidence 3456666666543 22 8899999999988888643344 77 8899999888753 56799999
Q ss_pred cCCCCCCcceEecc-----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeee-eccccccccCCCCcce
Q 000177 1581 ASSIAGGPMHSFEG-----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAK-LSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1581 l~t~~gk~l~tf~g-----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~t-L~d~s~~~~~~gh~~~ 1648 (1922)
..+ .+.+.++.- -..+.|+|||++++++.. ..++.|.++| .+++.+.+ +..+ .
T Consensus 104 ~~t--~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~-~~~~~v~viD-~t~~~~~~~i~~~----------~- 168 (373)
T 2mad_H 104 PVT--FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQF-AAGPAVGLVV-QGGSSDDQLLSSP----------T- 168 (373)
T ss_pred CCC--CcEEEEEECCCccccccCCCccceEECCCCCEEEEEec-CCCCeEEEEE-CCCCEEeEEcCCC----------c-
Confidence 987 555554421 257899999999998722 1257899999 99998877 6411 1
Q ss_pred EEEEcCCCCe-Ee-ecc----EEEEcCCCcceeeec-----cCCCce--EEEEecCCCEEEEEe---E--EEecCCC--e
Q 000177 1649 QIHFSPSDTM-LL-WNG----ILWDRRNSVPVHRFD-----QFTDHG--GGGFHPAGNEVIINS---E--VWDLRKF--R 1708 (1922)
Q Consensus 1649 vVaFSPdG~l-La-Sgg----rLWDlrtgk~I~kf~-----gh~~~V--sVaFSPdG~~LASGS---e--IWDLrTg--k 1708 (1922)
++.+.|++.. ++ .+. .+||. +++.+.... .....+ ...|.+++..++..+ . ++|+.+. +
T Consensus 169 ~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~ 247 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT 247 (373)
T ss_pred eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce
Confidence 1333344421 11 111 57777 776553221 111222 445666654332222 2 5566543 2
Q ss_pred EEEEEcCC------------CceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC
Q 000177 1709 LLRSVPSL------------DQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR 1776 (1922)
Q Consensus 1709 lL~tl~gH------------~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr 1776 (1922)
.+..+.-. ....+.|+|+|+.+|.+........ .......+.++|..+++.+.++....
T Consensus 248 v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~---------~~~~~~~V~VID~~t~~vv~~i~~g~ 318 (373)
T 2mad_H 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK---------LHAAAKEVTSVTGLVGQTSSQISLGH 318 (373)
T ss_pred EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc---------ccCCCCeEEEEECCCCEEEEEEECCC
Confidence 33333210 0134788999998888743210000 00123568899999999999999888
Q ss_pred ceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1777 CVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1777 ~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+.++|+|+++++..+... .+..+.+|++.
T Consensus 319 ~p~~i~~s~Dg~~~l~v~~~----~~~~V~ViD~~ 349 (373)
T 2mad_H 319 DVDAISVAQDGGPDLYALSA----GTEVLHIYDAG 349 (373)
T ss_pred CcCeEEECCCCCeEEEEEcC----CCCeEEEEECC
Confidence 89999999999944444321 12556777653
No 198
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.85 E-value=6.2e-06 Score=92.57 Aligned_cols=210 Identities=8% Similarity=0.008 Sum_probs=141.4
Q ss_pred ecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceee-eccCCCCeeEEEeeecCCCcEEEEec-CCcEEEecc
Q 000177 1504 CRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLES-CTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNA 1581 (1922)
Q Consensus 1504 LrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~t-L~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl 1581 (1922)
+..+. ..+++++++++|+++++...++.|.+||.. ++.... +..+...+.++ .++++|.++++.. ++.|..||.
T Consensus 10 ~~~~~-~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 10 LTNQD-TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCL--TISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp CCSSS-CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEE--EECTTSCEEEEETTTTEEEEECT
T ss_pred CCCcC-CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeE--EECCCCCEEEeCCCCCeEEEECC
Confidence 34455 679999999999988777778999999987 554322 23355778899 8889999888865 788999997
Q ss_pred CCCCCCcceEec------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1582 SSIAGGPMHSFE------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1582 ~t~~gk~l~tf~------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
.. + ...+. ....+++.++|+.+++. ..++.|.+||. +++...... .........++++++
T Consensus 86 ~g---~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~---~~~~~i~~~d~-~g~~~~~~~------~~~~~~~~~i~~~~~ 151 (299)
T 2z2n_A 86 KG---I-IKEYTLPNPDSAPYGITEGPNGDIWFTE---MNGNRIGRITD-DGKIREYEL------PNKGSYPSFITLGSD 151 (299)
T ss_dssp TS---C-EEEEECSSTTCCEEEEEECTTSCEEEEE---TTTTEEEEECT-TCCEEEEEC------SSTTCCEEEEEECTT
T ss_pred CC---c-EEEEeCCCcCCCceeeEECCCCCEEEEe---cCCceEEEECC-CCCEEEecC------CCCCCCCceEEEcCC
Confidence 52 2 22221 24789999999888876 56788999998 555432211 011233445899999
Q ss_pred CCeEeecc-----EEEEcCCCcceee-eccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE-EcCCC--cee
Q 000177 1656 DTMLLWNG-----ILWDRRNSVPVHR-FDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS-VPSLD--QTT 1720 (1922)
Q Consensus 1656 G~lLaSgg-----rLWDlrtgk~I~k-f~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t-l~gH~--~~s 1720 (1922)
|.++++.. ..||. +++.... +....... +++++++|...++.. .+||. +++.... ++.+. ...
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 229 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHA 229 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCcee
Confidence 98888653 67777 5554332 22222333 899999999776653 36787 6664332 22121 278
Q ss_pred EEEccCCCEEEEE
Q 000177 1721 ITFNARGDVIYAI 1733 (1922)
Q Consensus 1721 VaFSPdG~~LaSg 1733 (1922)
++++++|.+.++.
T Consensus 230 i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 230 ITAGAGIDLWFTE 242 (299)
T ss_dssp EEECSTTCEEEEE
T ss_pred EEECCCCCEEEec
Confidence 9999999866554
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.83 E-value=5.8e-07 Score=103.86 Aligned_cols=212 Identities=11% Similarity=0.025 Sum_probs=148.7
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccC-CCCeeEEEeeecCCCcEEEE-ec-
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSH-QAPVTLVQSHLSGETQLLLS-SS- 1572 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gH-ss~VtsLq~afSpDG~lLaS-Ss- 1572 (1922)
.+.+.+..+..|....+.++.++|+|++|+ +.++.|+.||. +|+.+..+..+ ...+.++ .+.++|+++++ +.
T Consensus 23 ~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~--~~~~dG~~lv~~~~~ 97 (276)
T 3no2_A 23 DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTA--RILPDGNALVAWCGH 97 (276)
T ss_dssp TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEE--EECTTSCEEEEEEST
T ss_pred CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccccc--EECCCCCEEEEecCC
Confidence 356666666665413688999999999888 45788999999 89999888765 3567888 78999999998 44
Q ss_pred CCcEEEeccCCCCCCcceEecc----------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEG----------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG 1642 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~g----------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~ 1642 (1922)
++.|..+|. + ++.+.++.. .+.+.+.++|+++++. ..++.|.+||.. |+.+.++..
T Consensus 98 ~~~v~~vd~-~--Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~---~~~~~v~~~d~~-G~~~w~~~~------- 163 (276)
T 3no2_A 98 PSTILEVNM-K--GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL---FATSEVREIAPN-GQLLNSVKL------- 163 (276)
T ss_dssp TEEEEEECT-T--SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE---TTTTEEEEECTT-SCEEEEEEC-------
T ss_pred CCEEEEEeC-C--CCEEEEEeccCCCCcccccccCceECCCCCEEEEe---cCCCEEEEECCC-CCEEEEEEC-------
Confidence 566777775 3 666666531 2457788999999988 788999999998 999888861
Q ss_pred CCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCC------Cce-EEEEecCCCEEEEEeEEEecCCCeEE
Q 000177 1643 RGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFT------DHG-GGGFHPAGNEVIINSEVWDLRKFRLL 1710 (1922)
Q Consensus 1643 ~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~------~~V-sVaFSPdG~~LASGSeIWDLrTgklL 1710 (1922)
......+.+.++|++++++. ..||..+|+.+.++.... ..+ ++...++|+.+++.. + ++..
T Consensus 164 -~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~---~---g~~~ 236 (276)
T 3no2_A 164 -SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW---Q---GHDR 236 (276)
T ss_dssp -SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE---C---TTCT
T ss_pred -CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec---c---Cccc
Confidence 11223377789999888665 788988899998886431 113 778889998877652 0 1000
Q ss_pred EEEcCCCceeEEEccCCCEEEEE
Q 000177 1711 RSVPSLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1711 ~tl~gH~~~sVaFSPdG~~LaSg 1733 (1922)
..........+.++++|+++-..
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEEEEE
T ss_pred cccccCCceEEEECCCCCEEEEe
Confidence 00000112466677777776554
No 200
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.81 E-value=1.4e-06 Score=100.59 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=136.8
Q ss_pred CCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCc
Q 000177 1510 ALLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1510 ~~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~ 1588 (1922)
..--+..|+++ +.++++...++.|..||..+++. ..+. +...+.++ .++++|+++++. +..|.+||..+ ++.
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i--~~~~dG~l~v~~-~~~l~~~d~~~--g~~ 85 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSV--ALRQSGGYVATI-GTKFCALNWKE--QSA 85 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEE--EEBTTSSEEEEE-TTEEEEEETTT--TEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEE--EECCCCCEEEEE-CCeEEEEECCC--CcE
Confidence 45668899995 55677777889999999987765 3332 35678999 889999977665 66899999876 332
Q ss_pred c--eEe------ccceeEEEcCCCCEEEEeecCCC------CCeEEEEECCC-CceeeeeccccccccCCCCcceEEEEc
Q 000177 1589 M--HSF------EGCKAARFSNSGNLFAALPTETS------DRGILLYDIQT-YQLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1589 l--~tf------~gh~sVaFSPDG~~LaSgS~~S~------DgtIrIWDlrT-gk~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
. ... ...+.++++|+|+++++...... .....||.+.. ++...... .....+.++|+
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~--------~~~~pngi~~s 157 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD--------QVDISNGLDWS 157 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE--------EESBEEEEEEC
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee--------ccccccceEEc
Confidence 2 111 11367999999997776421110 12234554442 33322221 01223449999
Q ss_pred CCCCeEe-ecc-----EEEEc--CCCcc-----eeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEc
Q 000177 1654 PSDTMLL-WNG-----ILWDR--RNSVP-----VHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVP 1714 (1922)
Q Consensus 1654 PdG~lLa-Sgg-----rLWDl--rtgk~-----I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~ 1714 (1922)
|+++.++ +.. .+||+ .++.. +..+....... .+++.++|++.++.. .+||..+++++..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 9998664 333 56665 45543 22222222333 889999998776654 378888899999888
Q ss_pred CCCc--eeEEEc-cCCCEEEEEEc
Q 000177 1715 SLDQ--TTITFN-ARGDVIYAILR 1735 (1922)
Q Consensus 1715 gH~~--~sVaFS-PdG~~LaSgs~ 1735 (1922)
.+.. ++++|. |+++.|+.+..
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCceEEEEeCCCCCEEEEEcC
Confidence 6533 899998 89998887754
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.79 E-value=1.2e-07 Score=123.44 Aligned_cols=211 Identities=12% Similarity=0.032 Sum_probs=130.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCC---------
Q 000177 1510 ALLTCITFLGDSSHIAVGSHT-----KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQ--------- 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~D-----GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDg--------- 1574 (1922)
..+..++|||||++|+.++.+ .+|++||+.+++.+.... +...+..+ +|+|| +.|+. +.+.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~--~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGL--AWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCC--EESTT-SEEEEEECCCC--------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccE--EEECC-CEEEEEEecCccccccccc
Confidence 468899999999999887755 469999999998754311 11122455 88999 77766 4343
Q ss_pred -----cEEEeccCCCCCCcceEec--c----ceeEEEcCCCCEEEEeecCC--CCCeEEEEECCCC--ceeeeecccccc
Q 000177 1575 -----DVHLWNASSIAGGPMHSFE--G----CKAARFSNSGNLFAALPTET--SDRGILLYDIQTY--QLEAKLSDTSVN 1639 (1922)
Q Consensus 1575 -----tVkLWDl~t~~gk~l~tf~--g----h~sVaFSPDG~~LaSgS~~S--~DgtIrIWDlrTg--k~i~tL~d~s~~ 1639 (1922)
.|++|++.+........+. . ...+.|+|||++|+..+... ....|++||+.++ ++...+..
T Consensus 239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~---- 314 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP---- 314 (741)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC----
T ss_pred CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC----
Confidence 3889998762111122232 2 35789999999988874333 3458999999887 31344431
Q ss_pred ccCCCCcceEEEEcCCCCeEeecc---------EEEEcCCC--cceeeeccCCCce-EEEEecCCCEEEEEe-----EEE
Q 000177 1640 LTGRGHAYSQIHFSPSDTMLLWNG---------ILWDRRNS--VPVHRFDQFTDHG-GGGFHPAGNEVIINS-----EVW 1702 (1922)
Q Consensus 1640 ~~~~gh~~~vVaFSPdG~lLaSgg---------rLWDlrtg--k~I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIW 1702 (1922)
........++|+|+.|+..+ .+||+.++ +....+..+...+ .+.|+ ++..+++.. +||
T Consensus 315 ----~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 315 ----DLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp ----SSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred ----CCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 11111222458888776332 67888774 2333333444444 66776 455556554 466
Q ss_pred ecC-CCeEEEEEcCC-Cc--eeEEEccCCCEEEEE
Q 000177 1703 DLR-KFRLLRSVPSL-DQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1703 DLr-TgklL~tl~gH-~~--~sVaFSPdG~~LaSg 1733 (1922)
.+. +++.++.+..+ .. ..+.|+|+++.|+..
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~ 424 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLS 424 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEE
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEE
Confidence 544 46666777643 22 578899998866643
No 202
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.77 E-value=1e-06 Score=114.84 Aligned_cols=260 Identities=9% Similarity=0.035 Sum_probs=149.9
Q ss_pred CCCCEEEEEeCCCc---EEEEEC--C---CCCceee-----e-ccCCCCeeEEEeeecCCCcEEEEec--C----CcEEE
Q 000177 1519 GDSSHIAVGSHTKE---LKIFDS--N---SSSPLES-----C-TSHQAPVTLVQSHLSGETQLLLSSS--S----QDVHL 1578 (1922)
Q Consensus 1519 PDG~lLASGS~DGt---IkIWDl--~---tgk~l~t-----L-~gHss~VtsLq~afSpDG~lLaSSs--D----gtVkL 1578 (1922)
|+|++++....++. -.||-. . .++.... + .+|...+..+ .|||||++|+.+. . .+|++
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~--~~SPDG~~la~~~~~~G~e~~~i~v 193 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAW--AASDDGRLLAYSVQDGGSDWRTVKF 193 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEE--EECTTSSEEEEEEEETTCSEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeE--EECCCCCEEEEEEcCCCCceEEEEE
Confidence 77887776665543 455544 3 3333222 1 2344456677 8999999998743 2 36999
Q ss_pred eccCCCCCCcceE-eccc--eeEEEcCCCCEEEEeecCCC-----------CCeEEEEECCCCcee--eeeccccccccC
Q 000177 1579 WNASSIAGGPMHS-FEGC--KAARFSNSGNLFAALPTETS-----------DRGILLYDIQTYQLE--AKLSDTSVNLTG 1642 (1922)
Q Consensus 1579 WDl~t~~gk~l~t-f~gh--~sVaFSPDG~~LaSgS~~S~-----------DgtIrIWDlrTgk~i--~tL~d~s~~~~~ 1642 (1922)
||+.+ ++.+.. +.+. ..++|+|| +.|+.++.+.. ...|++|++.+++.. ..+. .
T Consensus 194 ~dl~t--g~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~-------~ 263 (741)
T 1yr2_A 194 VGVAD--GKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA-------T 263 (741)
T ss_dssp EETTT--CCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-------C
T ss_pred EECCC--CCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-------c
Confidence 99987 555432 2222 57899999 98888743322 335999999877632 2222 1
Q ss_pred CCCc--ceEEEEcCCCCeEeecc----------EEEEcCCC--cceeeeccCCCceEEEEecCCCEEEEEe---------
Q 000177 1643 RGHA--YSQIHFSPSDTMLLWNG----------ILWDRRNS--VPVHRFDQFTDHGGGGFHPAGNEVIINS--------- 1699 (1922)
Q Consensus 1643 ~gh~--~~vVaFSPdG~lLaSgg----------rLWDlrtg--k~I~kf~gh~~~VsVaFSPdG~~LASGS--------- 1699 (1922)
..+. ...+.|+|||++|+..+ .+||+.++ ++...+..+.......++|+|..|+..+
T Consensus 264 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEE
T ss_pred CCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEE
Confidence 1232 34489999999887322 78898877 4255565555444223458999888776
Q ss_pred EEEecCCC--eEEEEEcCCCc--eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc-
Q 000177 1700 EVWDLRKF--RLLRSVPSLDQ--TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV- 1774 (1922)
Q Consensus 1700 eIWDLrTg--klL~tl~gH~~--~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv- 1774 (1922)
.+||+.++ +....++.+.. ..+.|+ ++.++++...+.. ..+..++. +...+..+..
T Consensus 344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-----------------~~l~~~~~-~g~~~~~l~~~ 404 (741)
T 1yr2_A 344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-----------------SQVLAFDL-DGKPAGAVSLP 404 (741)
T ss_dssp EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-----------------EEEEEEET-TSCEEEECBCS
T ss_pred EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-----------------EEEEEEeC-CCCceeeccCC
Confidence 26788774 34444444443 456666 3444444432221 12233332 1222333332
Q ss_pred -CCceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1775 -DRCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1775 -kr~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
...+..++++|++..+++.-.. ......+.+|++.
T Consensus 405 ~~~~v~~~~~s~d~~~l~~~~ss--~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 405 GIGSASGLSGRPGDRHAYLSFSS--FTQPATVLALDPA 440 (741)
T ss_dssp SSCEEEEEECCBTCSCEEEEEEE--TTEEEEEEEEETT
T ss_pred CCeEEEEeecCCCCCEEEEEEcC--CCCCCEEEEEECC
Confidence 3457889999988877765322 2233567777753
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.69 E-value=1.4e-06 Score=107.46 Aligned_cols=250 Identities=12% Similarity=0.080 Sum_probs=160.7
Q ss_pred eeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccC-------CCCee
Q 000177 1493 FVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSH-------QAPVT 1555 (1922)
Q Consensus 1493 fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gH-------ss~Vt 1555 (1922)
+...+++.+.++.--. .+ .++|+|||++|+++. .++.|.++|..+++.+.++.-- ...-.
T Consensus 104 ID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~ 180 (426)
T 3c75_H 104 IDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW 180 (426)
T ss_dssp EETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG
T ss_pred EECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc
Confidence 3345677777776433 34 899999999888876 4779999999999988877421 12334
Q ss_pred EEEeeecCCCcEEEEec---CCcEEEeccCCCCCCcceEeccceeEEEcCCC-CEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1556 LVQSHLSGETQLLLSSS---SQDVHLWNASSIAGGPMHSFEGCKAARFSNSG-NLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1556 sLq~afSpDG~lLaSSs---DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
.+ .|+|||++|+.+. +++|.+.|+.+ .+.+.++.--.+....|++ +.+++. +.|+++.+.|..+++...
T Consensus 181 ~~--~~spDGk~lyV~n~~~~~~VsVID~~t--~kvv~~I~v~g~~~~~p~g~~~~v~~---~~dG~~~~V~~~~~~v~~ 253 (426)
T 3c75_H 181 MN--ALTPDNKNLLFYQFSPAPAVGVVDLEG--KTFDRMLDVPDCYHIFPASPTVFYMN---CRDGSLARVDFADGETKV 253 (426)
T ss_dssp GS--EECTTSSEEEEEECSSSCEEEEEETTT--TEEEEEEECCSEEEEEEEETTEEEEE---ETTSSEEEEECCTTCCEE
T ss_pred eE--EEcCCCCEEEEEecCCCCeEEEEECCC--CeEEEEEEcCCceeeccCCCcEEEEE---cCCCCEEEEECCCCcEEE
Confidence 56 7899999888752 57899999998 6666666532233444543 444544 557777777876555443
Q ss_pred eeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcc--eeeeccC-----------CCceEEEEecCCC
Q 000177 1632 KLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVP--VHRFDQF-----------TDHGGGGFHPAGN 1693 (1922)
Q Consensus 1632 tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~--I~kf~gh-----------~~~VsVaFSPdG~ 1693 (1922)
+.. .... .........+.|++++..++... .+.|...+.. +..+... .....+.|+|+|+
T Consensus 254 ~~~-~~~~-v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~ 331 (426)
T 3c75_H 254 TNT-EVFH-TEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSD 331 (426)
T ss_dssp EEC-CCCS-CTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGT
T ss_pred Eee-eeec-cCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCC
Confidence 211 0000 00111111256788876544322 5666654331 1222110 0111378999988
Q ss_pred EEEEE------------e---EEEecCCCeEEEEEcCCC-ceeEEEccCCC-EEEEEEccCchhhhhhhcccccccCCcc
Q 000177 1694 EVIIN------------S---EVWDLRKFRLLRSVPSLD-QTTITFNARGD-VIYAILRRNLEDVMSAVHTRRVKHPLFA 1756 (1922)
Q Consensus 1694 ~LASG------------S---eIWDLrTgklL~tl~gH~-~~sVaFSPdG~-~LaSgs~~d~~dv~s~lh~rr~ksp~~s 1756 (1922)
.+.+. + .++|+.+++.+.+++... .+.+.|+|+|+ .+|++.. ...
T Consensus 332 rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~------------------~s~ 393 (426)
T 3c75_H 332 RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSA------------------GTQ 393 (426)
T ss_dssp EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEET------------------TTT
T ss_pred EEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcC------------------CCC
Confidence 65553 2 278999999999998443 48999999999 8888742 235
Q ss_pred eEEEEecCCCceeeee
Q 000177 1757 AFRTVDAINYSDIATI 1772 (1922)
Q Consensus 1757 sFrt~Da~dys~IaTi 1772 (1922)
.+.++|..+++.+.++
T Consensus 394 ~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 394 TLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCCEEEEe
Confidence 6889999999999887
No 204
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.69 E-value=3.4e-06 Score=102.92 Aligned_cols=210 Identities=10% Similarity=0.127 Sum_probs=133.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CC--cEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQ--DVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-Dg--tVkLWDl~t~~g 1586 (1922)
...+.++|+++|+++++...++.|++||..++........... .. + +|++++++|+.+. ++ .|.+|+... +
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-i--a~~~~g~~l~~~d~~~~~~I~~~d~~~--~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-P--AVTKDKQRVYSIGWEGTHTVYVYMKAS--G 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-C--EECTTSSEEEEEBSSTTCEEEEEEGGG--T
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-e--eEecCCCcEEEEecCCCceEEEEEcCC--C
Confidence 4578999999999888888889999999987776555443222 33 6 7899999877754 34 788888765 3
Q ss_pred CcceEe--------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc-ceEEEEcCC-C
Q 000177 1587 GPMHSF--------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA-YSQIHFSPS-D 1656 (1922)
Q Consensus 1587 k~l~tf--------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~-~~vVaFSPd-G 1656 (1922)
.....+ ...++++|+|++..|+.+ ..++.|+.||..++.... +....... ..+.. .+.++|+|+ +
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~---d~~~~I~~~d~~~~~~~~-~~~~~~~g-~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFV---DSNKNFGRFNVKTQEVTL-IKQLELSG-SLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEE---CTTCEEEEEETTTCCEEE-EEECCCCS-CCCCSSCCEEEEETTTT
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEE---ECCCcEEEEECCCCCEEE-EecccccC-CCCCCccccEEEeCCCC
Confidence 332333 234789999954445555 457899999998776432 21000000 01111 126999995 6
Q ss_pred CeEeecc-----EEEEcCCCcceeeeccC----------------CCceEEEEecCCCEEEEEe------EEEecCCCeE
Q 000177 1657 TMLLWNG-----ILWDRRNSVPVHRFDQF----------------TDHGGGGFHPAGNEVIINS------EVWDLRKFRL 1709 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlrtgk~I~kf~gh----------------~~~VsVaFSPdG~~LASGS------eIWDLrTgkl 1709 (1922)
.++++.. +.||.. ++ +..+.++ ..+..++|+|+|+++++.+ +.|++.++..
T Consensus 280 ~lyv~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 280 NFYMSDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEEEEETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE
T ss_pred EEEEEeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE
Confidence 6666654 455543 32 4444332 2233899999999777765 3678666764
Q ss_pred EEEEcCC----------------C-ceeEEEccCCCEEEEE
Q 000177 1710 LRSVPSL----------------D-QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1710 L~tl~gH----------------~-~~sVaFSPdG~~LaSg 1733 (1922)
.++.++ . .+.++++++|.++++-
T Consensus 358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred -EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 445443 1 2689999997655554
No 205
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.68 E-value=1.8e-06 Score=106.54 Aligned_cols=265 Identities=9% Similarity=0.051 Sum_probs=165.2
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEEeccCC
Q 000177 1520 DSSHIAVGSHT-----KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHLWNASS 1583 (1922)
Q Consensus 1520 DG~lLASGS~D-----GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkLWDl~t 1583 (1922)
+++++++.... ++|.++|..+++.+.++..-..+ .+ .++||+++|..+. ++.|.++|..+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gi--a~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t 158 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HP--VAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT 158 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EE--EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ce--EECCCCCEEEEEeccccccccCCCCCEEEEEECCC
Confidence 55555554432 68999999999999988544455 77 8899999776642 56899999998
Q ss_pred CCCCcceEec-----------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1584 IAGGPMHSFE-----------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1584 ~~gk~l~tf~-----------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.+.+.++. .-..+.|+|||++++.+.. ..++.|.++|+.+++.+.++.-+.............+.+
T Consensus 159 --~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~-~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 159 --FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQF-SPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN 235 (426)
T ss_dssp --CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEEC-SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred --CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEec-CCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence 67666653 1257899999999988721 236889999999999988886211000000001112566
Q ss_pred cCCCCeEeeccEEEEcCCCcce----eeeccCCCce--EEEEecCCCEEEEEe-----EEEecCCCeE--EEEEcC----
Q 000177 1653 SPSDTMLLWNGILWDRRNSVPV----HRFDQFTDHG--GGGFHPAGNEVIINS-----EVWDLRKFRL--LRSVPS---- 1715 (1922)
Q Consensus 1653 SPdG~lLaSggrLWDlrtgk~I----~kf~gh~~~V--sVaFSPdG~~LASGS-----eIWDLrTgkl--L~tl~g---- 1715 (1922)
+++|++++.. ..+++.. ..|......+ .+.|.+++..++..+ .+.|+.+... +.++.-
T Consensus 236 ~~dG~~~~V~-----~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~ 310 (426)
T 3c75_H 236 CRDGSLARVD-----FADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEA 310 (426)
T ss_dssp ETTSSEEEEE-----CCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred cCCCCEEEEE-----CCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccc
Confidence 7777666433 2222222 2232222222 456788877655444 2556644321 111110
Q ss_pred --------CCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCCceEEEEEcCCC
Q 000177 1716 --------LDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATERTD 1787 (1922)
Q Consensus 1716 --------H~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~SPdd 1787 (1922)
.....++|+|+|..+|.+........ .......+.++|..+++.+.++.+....+.++++|++
T Consensus 311 ~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt---------hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg 381 (426)
T 3c75_H 311 ERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK---------HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDA 381 (426)
T ss_dssp TGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC---------TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSS
T ss_pred ccccccccCCceeeEEcCCCCEEEEEeccccccc---------ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCC
Confidence 01124899999999998742110000 0002357899999999999999998889999999999
Q ss_pred c-eEEEEecCCCCCccceEEEEEe
Q 000177 1788 S-FVGLITMDDQEDMFSSARIYEI 1810 (1922)
Q Consensus 1788 s-~LAVVe~dds~d~dSsVRLyEV 1810 (1922)
+ .+.+.... ...+.++++
T Consensus 382 ~~~lyv~n~~-----s~~VsVID~ 400 (426)
T 3c75_H 382 EPLLYALSAG-----TQTLHIYDA 400 (426)
T ss_dssp SCEEEEEETT-----TTEEEEEET
T ss_pred CEEEEEEcCC-----CCeEEEEEC
Confidence 9 66655422 244555554
No 206
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.68 E-value=4.2e-06 Score=98.16 Aligned_cols=207 Identities=13% Similarity=0.038 Sum_probs=133.3
Q ss_pred CEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1511 LLTCITFLGDS-SHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1511 ~Vt~LaFSPDG-~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
...+..|+|++ .+++++..++.|.+||..+++.. .+. +...|.++ .|+++|++++++.+ .|.+||..+ ++..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i--~~~~dg~l~v~~~~-gl~~~d~~~--g~~~ 122 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSAL--AKISDSKQLIASDD-GLFLRDTAT--GVLT 122 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEE--EEEETTEEEEEETT-EEEEEETTT--CCEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEE--EEeCCCeEEEEECC-CEEEEECCC--CcEE
Confidence 35678899974 56677778899999999876543 332 34678999 78999998888754 499999876 4432
Q ss_pred eEe--------ccceeEEEcCCCCEEEEeecC---CCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1590 HSF--------EGCKAARFSNSGNLFAALPTE---TSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1590 ~tf--------~gh~sVaFSPDG~~LaSgS~~---S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
... ...+.+.|+|+|+++++.... ...+.|..+| +++...... .....+.++|+|+|+.
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--------~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--------DISIPNSICFSPDGTT 192 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--------EESSEEEEEECTTSCE
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--------CCcccCCeEEcCCCCE
Confidence 111 123678999999977764211 0124555666 454332221 0112345999999986
Q ss_pred Ee-ecc-----EEEEcC--CC-cc-----eeeeccCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC-
Q 000177 1659 LL-WNG-----ILWDRR--NS-VP-----VHRFDQFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD- 1717 (1922)
Q Consensus 1659 La-Sgg-----rLWDlr--tg-k~-----I~kf~gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~- 1717 (1922)
++ +.. .+||+. ++ +. +..+....... .+++.++|++.++.. .+||. +++.+..+..+.
T Consensus 193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~ 271 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK 271 (326)
T ss_dssp EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS
T ss_pred EEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCC
Confidence 54 332 677875 55 32 22222222333 889999998776652 37787 577777776544
Q ss_pred -ceeEEEc-cCCCEEEEEEc
Q 000177 1718 -QTTITFN-ARGDVIYAILR 1735 (1922)
Q Consensus 1718 -~~sVaFS-PdG~~LaSgs~ 1735 (1922)
.++++|+ |++..|+.+..
T Consensus 272 ~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEB
T ss_pred CcEEEEEecCCCCEEEEEec
Confidence 3799998 89888877644
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.67 E-value=2.1e-07 Score=113.58 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=108.2
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~ 1585 (1922)
.+. + |+.++| |+++|+++ .++.|++||+.+.........|..+|.++ .+.+. .+++...||+|.+||+..
T Consensus 86 ~lp-~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i--~~~~p-~~av~~~dG~L~v~dl~~-- 155 (388)
T 1xip_A 86 EIP-D-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQL--KNVNN-TLVILNSVNDLSALDLRT-- 155 (388)
T ss_dssp ECT-T-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEE--EECSS-EEEEEETTSEEEEEETTT--
T ss_pred eCC-C-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeE--EecCC-CEEEEECCCCEEEEEccC--
Confidence 466 6 999999 99999999 88999999998887777778888899988 44443 255557899999999986
Q ss_pred CCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce--eeeecccccccc--CCCCcceEEEEcCCCCeEee
Q 000177 1586 GGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL--EAKLSDTSVNLT--GRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1586 gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~--i~tL~d~s~~~~--~~gh~~~vVaFSPdG~lLaS 1661 (1922)
+.....-.++++++|||+| ++.| ..||++++|+...+.+ ..++..|..... .+.+.+..+.|.+++.++++
T Consensus 156 ~~~~~~~~~Vs~v~WSpkG--~~vg---~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 156 KSTKQLAQNVTSFDVTNSQ--LAVL---LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp CCEEEEEESEEEEEECSSE--EEEE---ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CccccccCCceEEEEcCCc--eEEE---EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 5555545568999999999 4556 6789999999988776 666753322221 23455566999999888874
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.60 E-value=1.6e-06 Score=102.45 Aligned_cols=220 Identities=10% Similarity=0.022 Sum_probs=138.3
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCCceeee-------ccCCCCeeEEEeeecCCCcEEEEe-c-----CC
Q 000177 1510 ALLTCITFLGDSSHIAVGS--HTKELKIFDSNSSSPLESC-------TSHQAPVTLVQSHLSGETQLLLSS-S-----SQ 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS--~DGtIkIWDl~tgk~l~tL-------~gHss~VtsLq~afSpDG~lLaSS-s-----Dg 1574 (1922)
..+..++++++|+++++.. .++.++||.+.+++. ..| .+|-..+..| .++++++++++. . +.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv--~~d~~g~L~v~D~g~~~~~~~ 93 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGI--KSDGNGIVWMLDNGNQSKSVP 93 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEE--EECSSSEEEEEECHHHHTSCC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEE--EEcCCCcEEEEcCCCCcCCCC
Confidence 4689999999999988864 234366666654543 322 2355678899 889999988774 2 57
Q ss_pred cEEEeccCCCCCCcceEecc----------ceeEEEcCCCCEE-EEeecCCCCCeEEEEECCCCceeeeeccc-cccc--
Q 000177 1575 DVHLWNASSIAGGPMHSFEG----------CKAARFSNSGNLF-AALPTETSDRGILLYDIQTYQLEAKLSDT-SVNL-- 1640 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~g----------h~sVaFSPDG~~L-aSgS~~S~DgtIrIWDlrTgk~i~tL~d~-s~~~-- 1640 (1922)
.|.+||+.+ ++.+.++.. .+.+++++++.++ ++......++.|.+||+.+++....+... ....
T Consensus 94 ~i~~~d~~t--g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 94 KLVAWDTLN--NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEEEETTT--TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred eEEEEECCC--CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 899999987 665554431 2779999865444 44310015789999999988776655310 0000
Q ss_pred ---cCCC----------------CcceEEEEcCCCCeEeecc----EEEEcCCC-----c-----ceee--eccCCCce-
Q 000177 1641 ---TGRG----------------HAYSQIHFSPSDTMLLWNG----ILWDRRNS-----V-----PVHR--FDQFTDHG- 1684 (1922)
Q Consensus 1641 ---~~~g----------------h~~~vVaFSPdG~lLaSgg----rLWDlrtg-----k-----~I~k--f~gh~~~V- 1684 (1922)
...+ ...+-++|+|+|+.|+... ++|.+.+. . .... ..++....
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pd 251 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICD 251 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCS
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCc
Confidence 0000 1123499999998776443 78876531 1 0111 11222223
Q ss_pred EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCC---CceeEEEccCCCEEEEEE
Q 000177 1685 GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSL---DQTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1685 sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH---~~~sVaFSPdG~~LaSgs 1734 (1922)
.++++++|..+++.. .+||..+++........ ..+.++|.++|.++++..
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 789999999888875 48998557643333211 127999999998777764
No 209
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.59 E-value=1e-06 Score=114.08 Aligned_cols=212 Identities=14% Similarity=0.130 Sum_probs=132.7
Q ss_pred CCCCCCEEEEEEcCCCCEEEE-----EeCCCcEEEEECCCCCceee-eccCCCCeeEEEeeecCCCcEEEEe-cCC----
Q 000177 1506 DDAGALLTCITFLGDSSHIAV-----GSHTKELKIFDSNSSSPLES-CTSHQAPVTLVQSHLSGETQLLLSS-SSQ---- 1574 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLAS-----GS~DGtIkIWDl~tgk~l~t-L~gHss~VtsLq~afSpDG~lLaSS-sDg---- 1574 (1922)
+|. ..+..++|||||++||. |+...+|+|||+.+++.+.. +.+. ....+ +|+ |++.|+.+ .+.
T Consensus 126 ~~~-~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~--~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 126 DGT-TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGI--SWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp TSC-CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCC--EEE-TTTEEEEEESSCCC--
T ss_pred CCc-EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccE--EEe-CCCEEEEEEecCcccc
Confidence 466 67889999999999884 33346799999999986543 2211 12455 788 98877664 452
Q ss_pred ---------cEEEeccCCCCCC--cceEecc-----ceeEEEcCCCCEEEEeec-CCCCCeEEEEECCCCc-eeeeeccc
Q 000177 1575 ---------DVHLWNASSIAGG--PMHSFEG-----CKAARFSNSGNLFAALPT-ETSDRGILLYDIQTYQ-LEAKLSDT 1636 (1922)
Q Consensus 1575 ---------tVkLWDl~t~~gk--~l~tf~g-----h~sVaFSPDG~~LaSgS~-~S~DgtIrIWDlrTgk-~i~tL~d~ 1636 (1922)
.|++|++.+.... ++..... ...+.|+|||++|+.... ++....|++||+.++. ....+..
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~- 278 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG- 278 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-
Confidence 4999999762221 2333333 256889999998765432 2344689999998764 3334431
Q ss_pred cccccCCCCcceEEEEcCCCCeEe-ecc--------EEEEcCCCcc--eeeeccCCCceEEEEecCCCEEEEEe------
Q 000177 1637 SVNLTGRGHAYSQIHFSPSDTMLL-WNG--------ILWDRRNSVP--VHRFDQFTDHGGGGFHPAGNEVIINS------ 1699 (1922)
Q Consensus 1637 s~~~~~~gh~~~vVaFSPdG~lLa-Sgg--------rLWDlrtgk~--I~kf~gh~~~VsVaFSPdG~~LASGS------ 1699 (1922)
...... ..|+++|..|+ ... ..||+.++.. ...+..+...+- .|+|++++|+...
T Consensus 279 ------~~~~~~-~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 279 ------DLDADV-SLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ------SSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEETTEEEEEEEETTEE
T ss_pred ------CCCceE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEECCEEEEEEEECCee
Confidence 011111 22666666544 221 6778877654 345555554444 9999999988776
Q ss_pred --EEEecCCCeEEEEEcCCC-c--eeEEEccCCCEEEEE
Q 000177 1700 --EVWDLRKFRLLRSVPSLD-Q--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 --eIWDLrTgklL~tl~gH~-~--~sVaFSPdG~~LaSg 1733 (1922)
.+||+.+ ...+.+.-.. . ..+.++|+++.|+..
T Consensus 351 ~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 351 RVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFG 388 (693)
T ss_dssp EEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEE
T ss_pred EEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEE
Confidence 3788874 4455554222 1 466778888776655
No 210
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.58 E-value=2.9e-06 Score=94.60 Aligned_cols=174 Identities=7% Similarity=-0.027 Sum_probs=117.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
..+.+++|+++|+++++.. ++.|.+||...... ..+. .....+..+ .++++|+++++. .++.|.+|+..+ ..
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i--~~~~~g~l~v~~~~~~~i~~~~~~~--~~ 140 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGL--AVDTQGAVYVADRGNNRVVKLAAGS--KT 140 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEE--EECTTCCEEEEEGGGTEEEEECTTC--CS
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcce--EECCCCCEEEEECCCCEEEEEECCC--ce
Confidence 4678999999999666655 88999999876544 3332 333678888 889999988885 478999997654 22
Q ss_pred cceE----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1588 PMHS----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1588 ~l~t----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
.... +...+.++++++|+.+++. ..++.|.+||..+........ ........++++++|.++++..
T Consensus 141 ~~~~~~~~~~~p~~i~~~~~g~l~v~~---~~~~~i~~~~~~~~~~~~~~~-------~~~~~p~~i~~d~~g~l~v~~~ 210 (270)
T 1rwi_B 141 QTVLPFTGLNDPDGVAVDNSGNVYVTD---TDNNRVVKLEAESNNQVVLPF-------TDITAPWGIAVDEAGTVYVTEH 210 (270)
T ss_dssp CEECCCCSCCSCCCEEECTTCCEEEEE---GGGTEEEEECTTTCCEEECCC-------SSCCSEEEEEECTTCCEEEEET
T ss_pred eEeeccccCCCceeEEEeCCCCEEEEE---CCCCEEEEEecCCCceEeecc-------cCCCCceEEEECCCCCEEEEEC
Confidence 2211 1224789999999977775 556889999988765433221 0112234499999998887653
Q ss_pred -----EEEEcCCCcceeeeccC-CCceEEEEecCCCEEEEEe
Q 000177 1664 -----ILWDRRNSVPVHRFDQF-TDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1664 -----rLWDlrtgk~I~kf~gh-~~~VsVaFSPdG~~LASGS 1699 (1922)
.+||............+ ....+++++|+|+.+++..
T Consensus 211 ~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~ 252 (270)
T 1rwi_B 211 NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADR 252 (270)
T ss_dssp TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEG
T ss_pred CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEEC
Confidence 78887654333222122 2334899999998766665
No 211
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.58 E-value=1.8e-06 Score=104.63 Aligned_cols=227 Identities=10% Similarity=-0.043 Sum_probs=143.3
Q ss_pred cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-----------CCcEEEeccCCCCCCcceEecc------
Q 000177 1532 ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-----------SQDVHLWNASSIAGGPMHSFEG------ 1594 (1922)
Q Consensus 1532 tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-----------DgtVkLWDl~t~~gk~l~tf~g------ 1594 (1922)
+|.++|..+++.+.++..-..+ .+ .++||++++..+. +++|.+||..+ ++.+.++.-
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i--~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T--~~vv~~I~v~~~~~~ 120 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LA--VAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT--FLPIADIELPDAPRF 120 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EE--EECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT--CCEEEEEEETTSCSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ce--EECCCCCEEEEEcccccccccCCCCCEEEEEECCC--CCEEEEEECCCcccc
Confidence 7889999999999998544455 67 8999998887753 67899999998 777777641
Q ss_pred -----ceeEEEcCCCCEEEEeecCCCCCeEEE--EECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-------
Q 000177 1595 -----CKAARFSNSGNLFAALPTETSDRGILL--YDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL------- 1660 (1922)
Q Consensus 1595 -----h~sVaFSPDG~~LaSgS~~S~DgtIrI--WDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa------- 1660 (1922)
-..+.|+|||++++.+.. +....+.+ ||+.+ +.++..+........+....++++++|++++
T Consensus 121 ~~g~~P~~ia~SpDGk~lyVan~-~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~ 196 (368)
T 1mda_H 121 SVGPRVHIIGNCASSACLLFFLF-GSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp CBSCCTTSEEECTTSSCEEEEEC-SSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred ccCCCcceEEEcCCCCEEEEEcc-CCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECcccc
Confidence 368999999999888722 22467888 99977 3333210000000000001122222222211
Q ss_pred -------------------------------ec-c--EEEEcCCC--cceeeeccC------CCce-----EEEEecCCC
Q 000177 1661 -------------------------------WN-G--ILWDRRNS--VPVHRFDQF------TDHG-----GGGFHPAGN 1693 (1922)
Q Consensus 1661 -------------------------------Sg-g--rLWDlrtg--k~I~kf~gh------~~~V-----sVaFSPdG~ 1693 (1922)
+. + .+.|+.++ +.+.++... .... .+.|+|+|+
T Consensus 197 ~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred ccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 10 2 33344322 122222111 1111 278999998
Q ss_pred EEEEE-----------e---EEEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceE
Q 000177 1694 EVIIN-----------S---EVWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAF 1758 (1922)
Q Consensus 1694 ~LASG-----------S---eIWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssF 1758 (1922)
.+..+ + .+||+.+++.+.+++... .+.+.|+|+|+.++.+.+. ....+
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~-----------------~~~~V 339 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA-----------------GTEVL 339 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET-----------------TTTEE
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccC-----------------CCCeE
Confidence 76642 1 399999999999887443 3899999999866655320 13568
Q ss_pred EEEecCCCceeeeeccCCceEEEEEcC
Q 000177 1759 RTVDAINYSDIATIPVDRCVLDFATER 1785 (1922)
Q Consensus 1759 rt~Da~dys~IaTidvkr~I~dLa~SP 1785 (1922)
.++|..+++.+.++.+...-+.+++.+
T Consensus 340 sVID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred EEEECCCCcEEEEEECCCCCCEEEeec
Confidence 899999999999998877766666554
No 212
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.57 E-value=6.5e-06 Score=95.12 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=140.5
Q ss_pred EecCCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEec
Q 000177 1503 TCRDDAGALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWN 1580 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWD 1580 (1922)
.+..+. .......|+|+|+ +++++..++.|..|+. +++ ...+..+...+..+ .++++|+++++.. ++.|.+|+
T Consensus 39 ~l~~~~-~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl--~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 39 TLYDQA-TWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGN--AVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp EEECCC-SSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEE--EECTTSCEEEEETTTTEEEEEC
T ss_pred EEecCC-cCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCcccee--eECCCCCEEEEECCCCEEEEEC
Confidence 344444 5678899999998 6788888999999998 454 45566667788999 8899999888764 67899999
Q ss_pred cCCCCCCcceEe---------ccceeEEEcCCCCEEEE----eecC----------CCCCeEEEEECCCCceeeeecccc
Q 000177 1581 ASSIAGGPMHSF---------EGCKAARFSNSGNLFAA----LPTE----------TSDRGILLYDIQTYQLEAKLSDTS 1637 (1922)
Q Consensus 1581 l~t~~gk~l~tf---------~gh~sVaFSPDG~~LaS----gS~~----------S~DgtIrIWDlrTgk~i~tL~d~s 1637 (1922)
.. ++. ..+ ...+.++++|+|+++++ |... ...+.|..||..+++......
T Consensus 114 ~~---g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~--- 186 (305)
T 3dr2_A 114 AD---GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMAD--- 186 (305)
T ss_dssp TT---SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEE---
T ss_pred CC---CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEec---
Confidence 75 222 222 12367999999998886 3110 013567888887766433211
Q ss_pred ccccCCCCcceEEEEcCCCCeEeec---------c--EEEEcCCCcc--eeeecc-CCCce-EEEEecCCCEEEEEe---
Q 000177 1638 VNLTGRGHAYSQIHFSPSDTMLLWN---------G--ILWDRRNSVP--VHRFDQ-FTDHG-GGGFHPAGNEVIINS--- 1699 (1922)
Q Consensus 1638 ~~~~~~gh~~~vVaFSPdG~lLaSg---------g--rLWDlrtgk~--I~kf~g-h~~~V-sVaFSPdG~~LASGS--- 1699 (1922)
....+.++|+|+++.|+.. . .+||+..+.. ...+.. ..... .+.+.++|++.++..
T Consensus 187 ------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~gv 260 (305)
T 3dr2_A 187 ------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGTGV 260 (305)
T ss_dssp ------ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSSEE
T ss_pred ------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCCcE
Confidence 1123348999999865532 2 5677665431 112211 11222 688999999655543
Q ss_pred EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEE
Q 000177 1700 EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1700 eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs 1734 (1922)
.+|+. .++.+..+..... .+++|+|+++.|+.+.
T Consensus 261 ~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~ 295 (305)
T 3dr2_A 261 CVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITG 295 (305)
T ss_dssp EEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEE
T ss_pred EEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEc
Confidence 37787 4777777764444 7899999999888774
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.57 E-value=0.00011 Score=82.53 Aligned_cols=205 Identities=9% Similarity=0.049 Sum_probs=136.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk 1587 (1922)
..+.++++.++|++.++...++.|.+||.. ++... .+..+...+..+ .+++++.++++.. ++.|..||... +
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~v~~~d~~g---~ 93 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCL--IVSSLGDIWFTENGANKIGKLSKKG---G 93 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE--EECTTSCEEEEETTTTEEEEECTTS---C
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeE--EECCCCCEEEEecCCCeEEEECCCC---C
Confidence 678999999999988887788999999987 55433 223344678888 7889999888865 78899998762 2
Q ss_pred cc-eEe----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1588 PM-HSF----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1588 ~l-~tf----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
.. ..+ .....+++.++|+.+++. ..++.|..||.. ++... +..+ ........++++++|+++++.
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~---~~~~~i~~~~~~-g~~~~-~~~~-----~~~~~~~~i~~d~~g~l~v~~ 163 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQ---LNGDRIGKLTAD-GTIYE-YDLP-----NKGSYPAFITLGSDNALWFTE 163 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEE---TTTTEEEEECTT-SCEEE-EECS-----STTCCEEEEEECTTSSEEEEE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEc---cCCCeEEEECCC-CCEEE-ccCC-----CCCCCceeEEECCCCCEEEEe
Confidence 21 122 124788999999988876 557889999987 55442 2100 012333458999999977765
Q ss_pred c-----EEEEcCCCcceeeec--cCCCce-EEEEecCCCEEEEEe---E--EEecCCCeEEEE-EcCCC--ceeEEEccC
Q 000177 1663 G-----ILWDRRNSVPVHRFD--QFTDHG-GGGFHPAGNEVIINS---E--VWDLRKFRLLRS-VPSLD--QTTITFNAR 1726 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~kf~--gh~~~V-sVaFSPdG~~LASGS---e--IWDLrTgklL~t-l~gH~--~~sVaFSPd 1726 (1922)
. ..||. +++.. .+. ...... .++++++|+..++.. . +||. +++.... ++... ...++++++
T Consensus 164 ~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 164 NQNNSIGRITN-TGKLE-EYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKN 240 (300)
T ss_dssp TTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECST
T ss_pred cCCCeEEEECC-CCcEE-EeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCC
Confidence 3 56666 45433 232 222233 899999998777653 3 5666 4554432 22222 278999999
Q ss_pred CCEEEEE
Q 000177 1727 GDVIYAI 1733 (1922)
Q Consensus 1727 G~~LaSg 1733 (1922)
|++.++.
T Consensus 241 g~l~v~~ 247 (300)
T 2qc5_A 241 SEIWFTE 247 (300)
T ss_dssp TCEEEEE
T ss_pred CCEEEec
Confidence 9865554
No 214
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.56 E-value=3.5e-05 Score=86.43 Aligned_cols=204 Identities=6% Similarity=-0.023 Sum_probs=137.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--ccCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCC
Q 000177 1507 DAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TSHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASS 1583 (1922)
Q Consensus 1507 H~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t 1583 (1922)
+. ..+.+++++++|.++++...++.|..||.. ++. ..+ ..+...+..+ .++++++++++. .++.|.+||. +
T Consensus 55 ~~-~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~d~-~ 128 (299)
T 2z2n_A 55 PD-AKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGI--TEGPNGDIWFTEMNGNRIGRITD-D 128 (299)
T ss_dssp TT-CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEE--EECTTSCEEEEETTTTEEEEECT-T
T ss_pred cc-CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceee--EECCCCCEEEEecCCceEEEECC-C
Confidence 44 679999999999988887778999999986 432 333 2345678888 788999988886 4788999998 4
Q ss_pred CCCCcce-Eec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1584 IAGGPMH-SFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1584 ~~gk~l~-tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
++... .+. ....+++.++|+.+++. ..++.|..||. +++...... + ........++++++|++
T Consensus 129 --g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~---~~~~~i~~~~~-~g~~~~~~~-~-----~~~~~~~~i~~~~~g~l 196 (299)
T 2z2n_A 129 --GKIREYELPNKGSYPSFITLGSDNALWFTE---NQNNAIGRITE-SGDITEFKI-P-----TPASGPVGITKGNDDAL 196 (299)
T ss_dssp --CCEEEEECSSTTCCEEEEEECTTSCEEEEE---TTTTEEEEECT-TCCEEEEEC-S-----STTCCEEEEEECTTSSE
T ss_pred --CCEEEecCCCCCCCCceEEEcCCCCEEEEe---CCCCEEEEEcC-CCcEEEeeC-C-----CCCCcceeEEECCCCCE
Confidence 33222 111 24789999999888776 56688999999 666543211 0 11223345899999998
Q ss_pred Eeecc-----EEEEcCCCcceeeec--cCCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEEE--cCCC--ceeE
Q 000177 1659 LLWNG-----ILWDRRNSVPVHRFD--QFTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRSV--PSLD--QTTI 1721 (1922)
Q Consensus 1659 LaSgg-----rLWDlrtgk~I~kf~--gh~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~tl--~gH~--~~sV 1721 (1922)
+++.. ..||. +++.. .+. .....+ +++++++|+..++.. .+||. +++. ..+ +.+. ..++
T Consensus 197 ~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i 272 (299)
T 2z2n_A 197 WFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGI 272 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEE
T ss_pred EEEccCCceEEEECC-CCcEE-EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceE
Confidence 87652 77887 66533 332 222334 899999999766642 36777 4543 333 2222 2688
Q ss_pred EEccCCCEEEEE
Q 000177 1722 TFNARGDVIYAI 1733 (1922)
Q Consensus 1722 aFSPdG~~LaSg 1733 (1922)
++ ++|.+.++.
T Consensus 273 ~~-~~g~l~v~~ 283 (299)
T 2z2n_A 273 CF-DGETIWFAM 283 (299)
T ss_dssp EE-CSSCEEEEE
T ss_pred Ee-cCCCEEEEe
Confidence 88 888877765
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.49 E-value=8.1e-07 Score=108.39 Aligned_cols=166 Identities=12% Similarity=0.053 Sum_probs=115.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC---------cee-eeccCCCCeeEEEeeecCCCcEEEEecCCcEEEe
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS---------PLE-SCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk---------~l~-tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLW 1579 (1922)
..++.+++++...++++|+.++ +++|++.... ... ....+.. |+.| +| |+++|+.+.++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l--~f--d~~~L~v~~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFV--CF--HGDQVLVSTRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEE--EE--ETTEEEEEESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEE--EE--CCCEEEEEcCCcEEEE
Confidence 3589999999999999999985 5569864332 111 2234666 9999 77 8899999899999999
Q ss_pred ccCCCCCCcceEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
|+.+ ......... ..++.+.+. .++++ +.||.|.+||+.+++... +. ..+.+++|||+
T Consensus 112 dv~s--l~~~~~~~~~~~~v~~i~~~~p--~~av~---~~dG~L~v~dl~~~~~~~-~~----------~~Vs~v~WSpk 173 (388)
T 1xip_A 112 DLEE--LSEFRTVTSFEKPVFQLKNVNN--TLVIL---NSVNDLSALDLRTKSTKQ-LA----------QNVTSFDVTNS 173 (388)
T ss_dssp ESSS--TTCEEEEEECSSCEEEEEECSS--EEEEE---ETTSEEEEEETTTCCEEE-EE----------ESEEEEEECSS
T ss_pred Echh--hhccCccceeecceeeEEecCC--CEEEE---ECCCCEEEEEccCCcccc-cc----------CCceEEEEcCC
Confidence 9987 222222222 245555543 27777 789999999999877643 22 35667999999
Q ss_pred CCeEeecc---EEEEcCCCcc--eeee------c---cCCCce-EEEEecCCCEEEEEe
Q 000177 1656 DTMLLWNG---ILWDRRNSVP--VHRF------D---QFTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1656 G~lLaSgg---rLWDlrtgk~--I~kf------~---gh~~~V-sVaFSPdG~~LASGS 1699 (1922)
|..+.... ++|+...+.. .+++ . +|...+ ++.|.+++.++++-.
T Consensus 174 G~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 174 QLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ceEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 93333222 8898877664 5555 2 245555 899999999888543
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.45 E-value=7.7e-06 Score=94.31 Aligned_cols=179 Identities=9% Similarity=0.072 Sum_probs=117.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc----CCCCeeEEEeeecCCCcEEEEec-C---------Cc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS----HQAPVTLVQSHLSGETQLLLSSS-S---------QD 1575 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g----Hss~VtsLq~afSpDG~lLaSSs-D---------gt 1575 (1922)
..+.+++|+++|+++++ . ++.|.+||..+++....... ....++.+ .++++|+++++.. . ..
T Consensus 54 ~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di--~~d~dG~l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 54 APVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDG--KVDPAGRYFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp SCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEE--EECTTSCEEEEEEECCSBTTBCCTTC
T ss_pred CceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCE--EECCCCCEEEecCCcccccccccCCC
Confidence 67999999999995554 4 56899999988765432221 12346778 8899999888742 1 33
Q ss_pred EEEeccCCCCCCcceEe---ccceeEEEcCCCCEEEEeecCCCCCeEEEEEC--CCCcee--eeeccccccccCCCCcce
Q 000177 1576 VHLWNASSIAGGPMHSF---EGCKAARFSNSGNLFAALPTETSDRGILLYDI--QTYQLE--AKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDl--rTgk~i--~tL~d~s~~~~~~gh~~~ 1648 (1922)
..||.+... ++..... ...+.++|+|+++.++.+ ++.++.|.+||+ .++... ..+.. .. .......
T Consensus 130 ~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~lyv~--~~~~~~i~~~~~d~~~G~~~~~~~~~~--~~--~~~~~p~ 202 (297)
T 3g4e_A 130 GALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIFYYI--DSLSYSVDAFDYDLQTGQISNRRSVYK--LE--KEEQIPD 202 (297)
T ss_dssp EEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEEEEE--EGGGTEEEEEEECTTTCCEEEEEEEEE--CC--GGGCEEE
T ss_pred cEEEEEECC-CCEEEEeeccccccceEEcCCCCEEEEe--cCCCCcEEEEeccCCCCcccCcEEEEE--CC--CCCCCCC
Confidence 466666531 3322222 224789999999977655 255788999997 455432 11110 00 0011122
Q ss_pred EEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce-EEEEe-cCCCEEEEEe
Q 000177 1649 QIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG-GGGFH-PAGNEVIINS 1699 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V-sVaFS-PdG~~LASGS 1699 (1922)
.++++++|++.++.. ..||..+++.+..+..+...+ +++|. |+++.|.+.+
T Consensus 203 g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 203 GMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred eeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 389999998877642 788888899988888775555 99998 8988776665
No 217
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.43 E-value=0.00014 Score=82.62 Aligned_cols=225 Identities=9% Similarity=0.082 Sum_probs=134.7
Q ss_pred CCCeeEEEeeecCCCcEEEE--------ecCCcEEEeccCCCCCCcceEe--------ccceeEEEcCC-CCEEEEeecC
Q 000177 1551 QAPVTLVQSHLSGETQLLLS--------SSSQDVHLWNASSIAGGPMHSF--------EGCKAARFSNS-GNLFAALPTE 1613 (1922)
Q Consensus 1551 ss~VtsLq~afSpDG~lLaS--------SsDgtVkLWDl~t~~gk~l~tf--------~gh~sVaFSPD-G~~LaSgS~~ 1613 (1922)
-....++ +|++++.++++ ..++.|.+||..+ ++..... ....++.++++ |+.+++.
T Consensus 17 ~~~~~~~--~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~--- 89 (314)
T 1pjx_A 17 IPGAEGP--VFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT--GKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD--- 89 (314)
T ss_dssp CTTCEEE--EECTTSCEEEEETTCEETTEECCEEEEECTTT--CCEEEEECCEETTEECCEEEEEECSSSSEEEEEE---
T ss_pred CCCccCc--eECCCCCEEEEEeccccCCCCCCEEEEEeCCC--CcEEEEEecccCCCCCCCceEEEecCCCcEEEEE---
Confidence 3456788 77899998888 4588999999876 4432211 22478999999 7766664
Q ss_pred CCCCeEEEEECCCCceeee-eccccccccCCCCcceEEEEcCCCCeEeec------------------cEEEEcCC-Ccc
Q 000177 1614 TSDRGILLYDIQTYQLEAK-LSDTSVNLTGRGHAYSQIHFSPSDTMLLWN------------------GILWDRRN-SVP 1673 (1922)
Q Consensus 1614 S~DgtIrIWDlrTgk~i~t-L~d~s~~~~~~gh~~~vVaFSPdG~lLaSg------------------grLWDlrt-gk~ 1673 (1922)
. .+.|.+||.. ++.... .. .. ..........++++|+|+++++. +.+|.+.. ++.
T Consensus 90 ~-~~~l~~~d~~-g~~~~~~~~-~~--~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 164 (314)
T 1pjx_A 90 M-RLGLLVVQTD-GTFEEIAKK-DS--EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM 164 (314)
T ss_dssp T-TTEEEEEETT-SCEEECCSB-CT--TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE
T ss_pred C-CCCEEEEeCC-CCEEEEEec-cC--CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCE
Confidence 3 3469999998 665432 21 00 00011234459999999988864 34555542 443
Q ss_pred eeeeccCCCceEEEEe----cCCCEEEEEe------EEEecC-CCe-----EEEEEcCCC---ceeEEEccCCCEEEEEE
Q 000177 1674 VHRFDQFTDHGGGGFH----PAGNEVIINS------EVWDLR-KFR-----LLRSVPSLD---QTTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1674 I~kf~gh~~~VsVaFS----PdG~~LASGS------eIWDLr-Tgk-----lL~tl~gH~---~~sVaFSPdG~~LaSgs 1734 (1922)
...+........++|+ |+|+.|..+. .+||+. +++ .+..+.++. ...++++++|.+.++..
T Consensus 165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~ 244 (314)
T 1pjx_A 165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW 244 (314)
T ss_dssp EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence 3322222223388999 9997655443 367765 454 333444442 26899999998877763
Q ss_pred ccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccC-CceEEEEEcCCCceEEEEecCCCCCccceEEEEEec
Q 000177 1735 RRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD-RCVLDFATERTDSFVGLITMDDQEDMFSSARIYEIG 1811 (1922)
Q Consensus 1735 ~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk-r~I~dLa~SPdds~LAVVe~dds~d~dSsVRLyEVG 1811 (1922)
..+ .+..++..+...+..+... ..+..+++++++..+.+..... ..+..|++.
T Consensus 245 ~~~-------------------~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~~ 298 (314)
T 1pjx_A 245 GSS-------------------HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN-----NAVWKFEWQ 298 (314)
T ss_dssp TTT-------------------EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT-----TEEEEEECS
T ss_pred CCC-------------------EEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCC-----CeEEEEeCC
Confidence 222 2344444333333334333 5688999999998777664221 345556553
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.37 E-value=4.6e-06 Score=101.08 Aligned_cols=221 Identities=14% Similarity=0.029 Sum_probs=135.3
Q ss_pred eecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCCceeeeccC-------CCCeeE
Q 000177 1494 VYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS----------HTKELKIFDSNSSSPLESCTSH-------QAPVTL 1556 (1922)
Q Consensus 1494 i~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS----------~DGtIkIWDl~tgk~l~tL~gH-------ss~Vts 1556 (1922)
...+++.+.++.--. .+ .+.|+|||++|+++. .+++|.+||+.+++.+.++.-+ ......
T Consensus 52 D~~t~~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ 128 (368)
T 1mda_H 52 CAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHI 128 (368)
T ss_dssp ETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTS
T ss_pred ECCCCeEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcce
Confidence 345677788776544 45 799999999998887 4789999999999999988533 123456
Q ss_pred EEeeecCCCcEEEEec---CCcEEE--eccCCCCCCcceEec--cc---------eeEEEcCCCCEEEEeecC-------
Q 000177 1557 VQSHLSGETQLLLSSS---SQDVHL--WNASSIAGGPMHSFE--GC---------KAARFSNSGNLFAALPTE------- 1613 (1922)
Q Consensus 1557 Lq~afSpDG~lLaSSs---DgtVkL--WDl~t~~gk~l~tf~--gh---------~sVaFSPDG~~LaSgS~~------- 1613 (1922)
+ .++|||++++.+. ...|.+ ||..+ +.++. ++ ..+.++++++.++.....
T Consensus 129 i--a~SpDGk~lyVan~~~~~~v~V~~iD~~t-----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 129 I--GNCASSACLLFFLFGSSAAAGLSVPGASD-----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp E--EECTTSSCEEEEECSSSCEEEEEETTTEE-----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred E--EEcCCCCEEEEEccCCCCeEEEEEEchhh-----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence 6 7899999887752 467888 99964 12221 10 112222332222211000
Q ss_pred ---------------------------CCCCeEEEEECCCCc--eeeeeccccc---cccCCCCcceEEEEcCCCCeEee
Q 000177 1614 ---------------------------TSDRGILLYDIQTYQ--LEAKLSDTSV---NLTGRGHAYSQIHFSPSDTMLLW 1661 (1922)
Q Consensus 1614 ---------------------------S~DgtIrIWDlrTgk--~i~tL~d~s~---~~~~~gh~~~vVaFSPdG~lLaS 1661 (1922)
+. +.+.+.|+.++. .+.++.-... ......+....+.|+|+++.++.
T Consensus 202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV 280 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred EEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEE
Confidence 11 344445543321 1111110000 00000011112689999876652
Q ss_pred ------c-----c---EEEEcCCCcceeeeccCCCceEEEEecCCCE-EEEEe------EEEecCCCeEEEEEcCCCc-e
Q 000177 1662 ------N-----G---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNE-VIINS------EVWDLRKFRLLRSVPSLDQ-T 1719 (1922)
Q Consensus 1662 ------g-----g---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~-LASGS------eIWDLrTgklL~tl~gH~~-~ 1719 (1922)
+ + .+||+.+++.+.++........+.|+|+|++ ++++. .+||+.+++.+++++.... +
T Consensus 281 ~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~ 360 (368)
T 1mda_H 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE 360 (368)
T ss_dssp EEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred EeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence 2 2 6999999999998876655559999999984 44443 3999999999999985554 6
Q ss_pred eEEEcc
Q 000177 1720 TITFNA 1725 (1922)
Q Consensus 1720 sVaFSP 1725 (1922)
.+++.+
T Consensus 361 ~i~~~~ 366 (368)
T 1mda_H 361 SLSVQN 366 (368)
T ss_dssp EEECCC
T ss_pred EEEeec
Confidence 777654
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.36 E-value=2e-05 Score=102.22 Aligned_cols=217 Identities=13% Similarity=0.134 Sum_probs=132.1
Q ss_pred cCCCCeeEEEeeecCCCcEEEEe-----c-CCcEEEeccCCCCCCcce-Eeccc--eeEEEcCCCCEEEEeecC------
Q 000177 1549 SHQAPVTLVQSHLSGETQLLLSS-----S-SQDVHLWNASSIAGGPMH-SFEGC--KAARFSNSGNLFAALPTE------ 1613 (1922)
Q Consensus 1549 gHss~VtsLq~afSpDG~lLaSS-----s-DgtVkLWDl~t~~gk~l~-tf~gh--~sVaFSPDG~~LaSgS~~------ 1613 (1922)
+|...+..+ .|||||++|+.+ + ..+|++||+.+ ++.+. .+.+. ..++|+ ||+.|+.++.+
T Consensus 126 ~~~~~l~~~--~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t--g~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 126 DGTTALDQL--SFSRDGRILAYSLSLAGSDWREIHLMDVES--KQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TSCCEEEEE--EECTTSSEEEEEEECSSCCEEEEEEEETTT--CSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCcEEEEEE--EECCCCCEEEEEEecCCCceEEEEEEECCC--CCCCccccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence 355567777 899999988853 2 24799999998 65443 34444 578999 99998888433
Q ss_pred ----CCCCeEEEEECCCCce--eeeeccccccccCCC-Ccc--eEEEEcCCCCeEeecc---------EEEEcCCCc-ce
Q 000177 1614 ----TSDRGILLYDIQTYQL--EAKLSDTSVNLTGRG-HAY--SQIHFSPSDTMLLWNG---------ILWDRRNSV-PV 1674 (1922)
Q Consensus 1614 ----S~DgtIrIWDlrTgk~--i~tL~d~s~~~~~~g-h~~--~vVaFSPdG~lLaSgg---------rLWDlrtgk-~I 1674 (1922)
.....|++|++.++.. ...+. ... +.. ..+.|+|||++|+... .+||+.++. ..
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~-------~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~ 273 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFG-------AIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPL 273 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEES-------CSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCC
T ss_pred ccccCCCcEEEEEECCCCcccceEEEe-------cCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCce
Confidence 1224599999987653 22222 112 222 3488999999886211 788887764 45
Q ss_pred eeeccCCCceEEEEecCCCEEEEEe-------E--EEecCCCeE--EEEEcCCCceeEEEccCCCEEEEEEccCchhhhh
Q 000177 1675 HRFDQFTDHGGGGFHPAGNEVIINS-------E--VWDLRKFRL--LRSVPSLDQTTITFNARGDVIYAILRRNLEDVMS 1743 (1922)
Q Consensus 1675 ~kf~gh~~~VsVaFSPdG~~LASGS-------e--IWDLrTgkl--L~tl~gH~~~sVaFSPdG~~LaSgs~~d~~dv~s 1743 (1922)
..+..+.....-.|+++|..|+..+ + +||+.++.. .+.+..+....+.|+++|++|+.....+..
T Consensus 274 ~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~s~~g~~lv~~~~~~g~---- 349 (693)
T 3iuj_A 274 LTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMVDAT---- 349 (693)
T ss_dssp EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEETTEEEEEEEETTE----
T ss_pred EEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEEEEEEECCEEEEEEEECCe----
Confidence 5666665555333677776665444 2 577776543 234444544334999999999877544311
Q ss_pred hhcccccccCCcceEEEEecCCCceeeeecc--CCceEEEEEcCCCceEEEEe
Q 000177 1744 AVHTRRVKHPLFAAFRTVDAINYSDIATIPV--DRCVLDFATERTDSFVGLIT 1794 (1922)
Q Consensus 1744 ~lh~rr~ksp~~ssFrt~Da~dys~IaTidv--kr~I~dLa~SPdds~LAVVe 1794 (1922)
..+.+++... .....+.. ...+..+.+++++..+.+..
T Consensus 350 ------------~~l~~~d~~g-~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ 389 (693)
T 3iuj_A 350 ------------ARVEQFDYEG-KRVREVALPGLGSVSGFNGKHDDPALYFGF 389 (693)
T ss_dssp ------------EEEEEECTTS-CEEEEECCSSSSEEEECCCCTTCSCEEEEE
T ss_pred ------------eEEEEEECCC-CeeEEeecCCCceEEeeecCCCCCEEEEEe
Confidence 1233443321 12222222 23466677788887776654
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.32 E-value=3.1e-05 Score=89.42 Aligned_cols=193 Identities=8% Similarity=0.045 Sum_probs=123.1
Q ss_pred eEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee---ccC-CCCeeEEEeeecCCCcEEEE----ec
Q 000177 1501 WRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC---TSH-QAPVTLVQSHLSGETQLLLS----SS 1572 (1922)
Q Consensus 1501 irtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL---~gH-ss~VtsLq~afSpDG~lLaS----Ss 1572 (1922)
..++..+. ..+..++|+++|+++++...++.|.+|+.+ ++..... .+. ...++.+ .++++|+++++ +.
T Consensus 78 ~~~~~~~~-~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i--~~d~dG~l~~td~~~g~ 153 (305)
T 3dr2_A 78 VDVLLDAT-AFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDL--IVARDGAIWFTDPPFGL 153 (305)
T ss_dssp EEEEEESC-SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCE--EECTTSCEEEECCSGGG
T ss_pred EEEEeCCC-CccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCE--EECCCCCEEEeCcCCCc
Confidence 34455566 678999999999977666667889999986 5532221 111 2346778 78999999987 22
Q ss_pred --------------CCcEEEeccCCCCCCcce--EeccceeEEEcCCCCEEEEeecCC---CCCeEEEEECCCCceeeee
Q 000177 1573 --------------SQDVHLWNASSIAGGPMH--SFEGCKAARFSNSGNLFAALPTET---SDRGILLYDIQTYQLEAKL 1633 (1922)
Q Consensus 1573 --------------DgtVkLWDl~t~~gk~l~--tf~gh~sVaFSPDG~~LaSgS~~S---~DgtIrIWDlrTgk~i~tL 1633 (1922)
.+.|..||..+ ++... .+...+.++|+|+++.|+.+.... ..+.|.+||+..+. +...
T Consensus 154 ~~~~~~~~~~~~~~~~~v~~~d~~~--g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~ 230 (305)
T 3dr2_A 154 RKPSQGCPADPELAHHSVYRLPPDG--SPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR 230 (305)
T ss_dssp SCGGGSCCCCCSSSCEEEEEECSSS--CCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE
T ss_pred cccccccccccccCCCeEEEEcCCC--CcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC
Confidence 24577777755 44332 223347899999999777662110 03789999987654 2111
Q ss_pred ccccccccCCCCcceEEEEcCCCCeEeecc---EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe--EEEec
Q 000177 1634 SDTSVNLTGRGHAYSQIHFSPSDTMLLWNG---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS--EVWDL 1704 (1922)
Q Consensus 1634 ~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS--eIWDL 1704 (1922)
. .......+. ...++++++|++.++.. .+||. .++.+.++.......+++|+|+++.|.+++ .+|-+
T Consensus 231 ~--~~~~~~~~~-pdgi~~d~~G~lwv~~~~gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 231 R--HFASVPDGL-PDGFCVDRGGWLWSSSGTGVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp E--EEECCSSSC-CCSEEECTTSCEEECCSSEEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEETTEEEEE
T ss_pred e--EEEECCCCC-CCeEEECCCCCEEEecCCcEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 1 000000111 12288999999777654 78887 577777777665444899999998777665 35443
No 221
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.32 E-value=0.00027 Score=79.25 Aligned_cols=206 Identities=8% Similarity=-0.026 Sum_probs=134.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk 1587 (1922)
..+.+++++++|++.++...++.|.+||.. ++... .+..+...+.++ .+.++++++++.. ++.|..||... +
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i--~~~~~g~l~v~~~~~~~i~~~~~~g---~ 135 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGI--TEGLNGDIWFTQLNGDRIGKLTADG---T 135 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE--EECSTTCEEEEETTTTEEEEECTTS---C
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccc--eECCCCCEEEEccCCCeEEEECCCC---C
Confidence 678999999999988877778999999987 55432 223344678888 7889999888865 78899998762 2
Q ss_pred cc-eEec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1588 PM-HSFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1588 ~l-~tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
.. ..+. ..+.+++.++|+.+++. ..++.|..||. +++... +.. .........++++++|.++++.
T Consensus 136 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~---~~~~~i~~~~~-~g~~~~-~~~-----~~~~~~~~~i~~d~~g~l~v~~ 205 (300)
T 2qc5_A 136 IYEYDLPNKGSYPAFITLGSDNALWFTE---NQNNSIGRITN-TGKLEE-YPL-----PTNAAAPVGITSGNDGALWFVE 205 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEE---TTTTEEEEECT-TCCEEE-EEC-----SSTTCCEEEEEECTTSSEEEEE
T ss_pred EEEccCCCCCCCceeEEECCCCCEEEEe---cCCCeEEEECC-CCcEEE-eeC-----CCCCCCcceEEECCCCCEEEEc
Confidence 22 1122 23788999999977765 55688999998 555433 320 0111223448999999888765
Q ss_pred c-----EEEEcCCCcceee-eccCCCce-EEEEecCCCEEEEEe---E--EEecCCCeEEEE-EcCC--CceeEEEccCC
Q 000177 1663 G-----ILWDRRNSVPVHR-FDQFTDHG-GGGFHPAGNEVIINS---E--VWDLRKFRLLRS-VPSL--DQTTITFNARG 1727 (1922)
Q Consensus 1663 g-----rLWDlrtgk~I~k-f~gh~~~V-sVaFSPdG~~LASGS---e--IWDLrTgklL~t-l~gH--~~~sVaFSPdG 1727 (1922)
. .+||. +++.... +......+ +++++++|+..++.. . .||. +++.... ++.. ...++++.++|
T Consensus 206 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g 283 (300)
T 2qc5_A 206 IMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDG 283 (300)
T ss_dssp TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTS
T ss_pred cCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCC
Confidence 3 56676 4543322 22222333 899999998766652 3 6666 3443321 2211 22789999999
Q ss_pred CEEEEE
Q 000177 1728 DVIYAI 1733 (1922)
Q Consensus 1728 ~~LaSg 1733 (1922)
.+.++.
T Consensus 284 ~l~v~~ 289 (300)
T 2qc5_A 284 SVWFAL 289 (300)
T ss_dssp CEEEEC
T ss_pred CEEEEc
Confidence 866654
No 222
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.27 E-value=6e-05 Score=93.29 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=132.3
Q ss_pred CCCcEEEEe--cCCcEEEeccCCCCC--CcceEec--------c---ceeEEEcCCCCEEEEeecC---CCCCeEEEEEC
Q 000177 1563 GETQLLLSS--SSQDVHLWNASSIAG--GPMHSFE--------G---CKAARFSNSGNLFAALPTE---TSDRGILLYDI 1624 (1922)
Q Consensus 1563 pDG~lLaSS--sDgtVkLWDl~t~~g--k~l~tf~--------g---h~sVaFSPDG~~LaSgS~~---S~DgtIrIWDl 1624 (1922)
.++++|+.+ .+++|.++|+.+... +...++. + -+.+...|+| .++++..+ ...+.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 788888774 388999999975222 2334452 1 1456788999 77765221 12378999999
Q ss_pred CCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec---------------------c---EEEEcCCCcceeeeccC
Q 000177 1625 QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN---------------------G---ILWDRRNSVPVHRFDQF 1680 (1922)
Q Consensus 1625 rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg---------------------g---rLWDlrtgk~I~kf~gh 1680 (1922)
.+++.+.++.... .. ..-...+.|+|+++.+++. + .+||+.+++.+.++...
T Consensus 172 ~T~~v~~~~~~~~-~~---~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 172 YSFEPLGKWEIDR-GD---QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp TTCCEEEECCSBC-TT---CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred CCCeEEEEEccCC-CC---ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 9999999886110 00 0111127889999988866 3 89999999888888764
Q ss_pred CC---ceEEEE--ecCCCEEEEEeE---------EE--ecCCC--eEEEEE--cC------------------CCceeEE
Q 000177 1681 TD---HGGGGF--HPAGNEVIINSE---------VW--DLRKF--RLLRSV--PS------------------LDQTTIT 1722 (1922)
Q Consensus 1681 ~~---~VsVaF--SPdG~~LASGSe---------IW--DLrTg--klL~tl--~g------------------H~~~sVa 1722 (1922)
.. ...+.| +|+|+++.++++ || ....+ +.++.+ +. .....+.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 21 224545 999998777653 32 22222 222221 11 1126899
Q ss_pred EccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecC---CCceeeeeccCC---------------ceEEEEEc
Q 000177 1723 FNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAI---NYSDIATIPVDR---------------CVLDFATE 1784 (1922)
Q Consensus 1723 FSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~---dys~IaTidvkr---------------~I~dLa~S 1784 (1922)
+||||++||++.... ..+.+++.. +.+.+..+.... .-.++.++
T Consensus 328 lS~DGrfLYVSnrg~------------------d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lS 389 (462)
T 2ece_A 328 ISLDDKFLYLSLWGI------------------GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEIS 389 (462)
T ss_dssp ECTTSCEEEEEETTT------------------TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEEC
T ss_pred ECCCCCEEEEEeCCC------------------CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEc
Confidence 999999999984321 234444432 334455554431 24788999
Q ss_pred CCCceEEEEe
Q 000177 1785 RTDSFVGLIT 1794 (1922)
Q Consensus 1785 Pdds~LAVVe 1794 (1922)
|+|+++.+..
T Consensus 390 pDGk~LyVaN 399 (462)
T 2ece_A 390 RDGRRVYVTN 399 (462)
T ss_dssp TTSSEEEEEC
T ss_pred CCCCEEEEEc
Confidence 9999999886
No 223
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.26 E-value=3.4e-05 Score=95.44 Aligned_cols=204 Identities=12% Similarity=0.145 Sum_probs=132.2
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCC----Cceeeec------cCC-CCeeEEEeeecCCCcEEEEe-cC------CcEEEe
Q 000177 1519 GDSSHIA-VGSHTKELKIFDSNSS----SPLESCT------SHQ-APVTLVQSHLSGETQLLLSS-SS------QDVHLW 1579 (1922)
Q Consensus 1519 PDG~lLA-SGS~DGtIkIWDl~tg----k~l~tL~------gHs-s~VtsLq~afSpDG~lLaSS-sD------gtVkLW 1579 (1922)
+++++|+ +|..++.|.|+|+.+. +..+++. .+. ..-..+ ..+|+| +++++ .+ +.|.++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~--~~~pdG-i~Vs~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTV--HCGPDA-IYISALGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEE--EECSSC-EEEEEEEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccce--eECCCe-EEEEcCCCcCCCCCCeEEEE
Confidence 6777665 5667889999999755 4445552 011 123344 568999 66663 23 689999
Q ss_pred ccCCCCCCcceEecc-------ceeEEEcCCCCEEEEeecC----------------CCCCeEEEEECCCCceeeeeccc
Q 000177 1580 NASSIAGGPMHSFEG-------CKAARFSNSGNLFAALPTE----------------TSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g-------h~sVaFSPDG~~LaSgS~~----------------S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
|..+ .+.+.++.. ...+-|+|+++.+++...+ ....+|.+||+.+++.+.++.
T Consensus 170 D~~T--~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~-- 245 (462)
T 2ece_A 170 DHYS--FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT-- 245 (462)
T ss_dssp CTTT--CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE--
T ss_pred ECCC--CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe--
Confidence 9998 778877752 1447889999998886321 136899999999998888876
Q ss_pred cccccCCCCcceE-EEE--cCCCCeEeecc---------E--EEEcCCCc--ceeee-------cc------------CC
Q 000177 1637 SVNLTGRGHAYSQ-IHF--SPSDTMLLWNG---------I--LWDRRNSV--PVHRF-------DQ------------FT 1681 (1922)
Q Consensus 1637 s~~~~~~gh~~~v-VaF--SPdG~lLaSgg---------r--LWDlrtgk--~I~kf-------~g------------h~ 1681 (1922)
.+..+..+. +.| +|+++++.... . +|....++ .+..+ .+ ..
T Consensus 246 ----vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~ 321 (462)
T 2ece_A 246 ----LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP 321 (462)
T ss_dssp ----SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECC
T ss_pred ----cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCC
Confidence 111122232 444 99998765322 2 22222221 11111 00 12
Q ss_pred CceEEEEecCCCEEEEEe------EEEecC---CCeEEEEEcCC----------------CceeEEEccCCCEEEEE
Q 000177 1682 DHGGGGFHPAGNEVIINS------EVWDLR---KFRLLRSVPSL----------------DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1682 ~~VsVaFSPdG~~LASGS------eIWDLr---TgklL~tl~gH----------------~~~sVaFSPdG~~LaSg 1733 (1922)
....+.+||||++|.++. .++|+. +.+++..++-. .-..+.++|+|++|+++
T Consensus 322 ~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 322 LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp CCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 223789999999999888 378874 35777777632 12789999999999998
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.24 E-value=1.1e-06 Score=105.42 Aligned_cols=188 Identities=12% Similarity=0.047 Sum_probs=102.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEE-ecCCcEEEeccCCCCCCcceEeccc---
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLS-SSSQDVHLWNASSIAGGPMHSFEGC--- 1595 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh--- 1595 (1922)
++..|++|+.||.|+.||..+|+.+.++.. ..+.+. .+..++.++++ +.|+.|+.||..+ ++.+..+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~--p~~~~g~~~v~~s~dg~l~a~d~~t--G~~~w~~~~~~~~ 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQV--PTHVEEPAFLPDPNDGSLYTLGSKN--NEGLTKLPFTIPE 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCC--C-----CCEEECTTTCCEEEC-------CCSEECSCCHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceec--ceEcCCCEEEEeCCCCEEEEEECCC--CceeeeeeccCcc
Confidence 578999999999999999999999888875 455555 45567777776 5799999999987 6666665432
Q ss_pred ---eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEE
Q 000177 1596 ---KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWD 1667 (1922)
Q Consensus 1596 ---~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWD 1667 (1922)
.+..+. .+..++++ +.|+.|+.||..+|+.+.++. .+. ...++|++..+++++ +.||
T Consensus 82 ~~~~sp~~~-~~~~v~~g---~~dg~v~a~D~~tG~~~w~~~---------~~~--~~~~~p~~~~v~~~~~dg~v~a~d 146 (369)
T 2hz6_A 82 LVQASPCRS-SDGILYMG---KKQDIWYVIDLLTGEKQQTLS---------SAF--ADSLSPSTSLLYLGRTEYTITMYD 146 (369)
T ss_dssp HHTTCSCC------CCCC---EEEEEEEEECCC---------------------------------EEEEEEEEEEECCC
T ss_pred ccccCceEe-cCCEEEEE---eCCCEEEEEECCCCcEEEEec---------CCC--cccccccCCEEEEEecCCEEEEEE
Confidence 111121 34556666 667899999999999887765 111 244567777777554 8899
Q ss_pred cCCCcceeeeccCCCceEEEEecCC---CEEEEEe-----EEEecCCCeEEEEEcCCCc--eeEEEccCCCE
Q 000177 1668 RRNSVPVHRFDQFTDHGGGGFHPAG---NEVIINS-----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDV 1729 (1922)
Q Consensus 1668 lrtgk~I~kf~gh~~~VsVaFSPdG---~~LASGS-----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~ 1729 (1922)
.++|+.+.++.... .....+.+++ ..+++++ ..||..+++.+-++.-... ....++++|..
T Consensus 147 ~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 147 TKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp SSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred CCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 99999877765321 1122333321 3344443 3789999998877663222 34556667754
No 225
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.24 E-value=5.7e-05 Score=88.61 Aligned_cols=177 Identities=12% Similarity=0.109 Sum_probs=113.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc---C-CCCeeEEEeeecCCCcEEEEec-C----CcEEEec
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS---H-QAPVTLVQSHLSGETQLLLSSS-S----QDVHLWN 1580 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g---H-ss~VtsLq~afSpDG~lLaSSs-D----gtVkLWD 1580 (1922)
..+.+++|+++|+++++. .+ .|.+||..+++....... + ...++.+ .++++|+++++.. + ....||.
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i--~~d~~G~l~v~~~~~~~~~~~~~l~~ 165 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDG--RMHPSGALWIGTMGRKAETGAGSIYH 165 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEE--EECTTSCEEEEEEETTCCTTCEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCE--EECCCCCEEEEeCCCcCCCCceEEEE
Confidence 569999999999877754 44 499999988875432211 1 2357788 8899999887743 1 2344444
Q ss_pred cCCCCCCcceEe---ccceeEEEcCCCCEEEEeecCCCCCeEEEEECC--CC-cee--eeeccccccccCCCCcceEEEE
Q 000177 1581 ASSIAGGPMHSF---EGCKAARFSNSGNLFAALPTETSDRGILLYDIQ--TY-QLE--AKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1581 l~t~~gk~l~tf---~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr--Tg-k~i--~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
+.+ ++..... ...+.++|+|+++.++.+ ++.++.|.+||+. ++ ... ..+.. . .........+++
T Consensus 166 ~~~--g~~~~~~~~~~~~~~i~~s~dg~~lyv~--~~~~~~I~~~d~~~~~Gl~~~~~~~~~~--~--~~~~~~p~gi~~ 237 (326)
T 2ghs_A 166 VAK--GKVTKLFADISIPNSICFSPDGTTGYFV--DTKVNRLMRVPLDARTGLPTGKAEVFID--S--TGIKGGMDGSVC 237 (326)
T ss_dssp EET--TEEEEEEEEESSEEEEEECTTSCEEEEE--ETTTCEEEEEEBCTTTCCBSSCCEEEEE--C--TTSSSEEEEEEE
T ss_pred EeC--CcEEEeeCCCcccCCeEEcCCCCEEEEE--ECCCCEEEEEEcccccCCcccCceEEEE--C--CCCCCCCCeeEE
Confidence 433 4332221 224789999999877655 2556899999986 55 321 11210 0 001112234899
Q ss_pred cCCCCeEeec---c--EEEEcCCCcceeeeccCCCce-EEEEe-cCCCEEEEEe
Q 000177 1653 SPSDTMLLWN---G--ILWDRRNSVPVHRFDQFTDHG-GGGFH-PAGNEVIINS 1699 (1922)
Q Consensus 1653 SPdG~lLaSg---g--rLWDlrtgk~I~kf~gh~~~V-sVaFS-PdG~~LASGS 1699 (1922)
+++|.+.++. + ..||. +++.+..+..+...+ +++|+ |++..|++++
T Consensus 238 d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 238 DAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEe
Confidence 9999987764 2 77887 677777777666556 89998 8988776554
No 226
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.21 E-value=3.8e-05 Score=97.80 Aligned_cols=206 Identities=9% Similarity=0.044 Sum_probs=140.1
Q ss_pred CCCCEEEEEeCC-CcEEEEECCCCCceeeecc-CCCCeeEEEeee-c-CCCcEEEEec-------------------CCc
Q 000177 1519 GDSSHIAVGSHT-KELKIFDSNSSSPLESCTS-HQAPVTLVQSHL-S-GETQLLLSSS-------------------SQD 1575 (1922)
Q Consensus 1519 PDG~lLASGS~D-GtIkIWDl~tgk~l~tL~g-Hss~VtsLq~af-S-pDG~lLaSSs-------------------Dgt 1575 (1922)
+||++|+....+ +.|.+.|+.+.++...+.- .......+ .+ + |++.++.++. ++.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~--~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGL--RPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEE--EECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcce--eeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 378888777665 4699999999998875421 23457777 55 4 8998888762 447
Q ss_pred EEEeccCCCCCCcceEec--c-ceeEEEcCCCCEEEEeecCCCC-----------------------------------C
Q 000177 1576 VHLWNASSIAGGPMHSFE--G-CKAARFSNSGNLFAALPTETSD-----------------------------------R 1617 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~--g-h~sVaFSPDG~~LaSgS~~S~D-----------------------------------g 1617 (1922)
+.++|..+ .+.+.++. + -..++++|+|+++++++..+.. +
T Consensus 177 vtvID~~t--~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 177 FTAVDADK--WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEEETTT--TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEEECCC--CeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 88899887 55555553 2 2568899999999888654422 2
Q ss_pred eEEEEECCC--Cce-eeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcCCCc------------ceee
Q 000177 1618 GILLYDIQT--YQL-EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRRNSV------------PVHR 1676 (1922)
Q Consensus 1618 tIrIWDlrT--gk~-i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlrtgk------------~I~k 1676 (1922)
.|.+.|.++ ++. +..++ .+.....+.++|||++++.++ .++|+.+.+ .+..
T Consensus 255 ~V~VID~~~~~~~~~~~~Ip--------vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIP--------IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEE--------EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred cEEEEeCcccCCceeEEEEe--------cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE
Confidence 366666666 333 33333 112222399999999988766 899988653 2334
Q ss_pred eccCCCceEEEEecCCCEEEEEe------EEEecCC----------CeEEEEEcCCCc-------eeEEEccCCCEEEEE
Q 000177 1677 FDQFTDHGGGGFHPAGNEVIINS------EVWDLRK----------FRLLRSVPSLDQ-------TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1677 f~gh~~~VsVaFSPdG~~LASGS------eIWDLrT----------gklL~tl~gH~~-------~sVaFSPdG~~LaSg 1733 (1922)
......+..++|+|+| ++.+.. -+||+.+ .+.+.++..|-+ ..++++|||++|++.
T Consensus 327 v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 327 PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 4434455589999999 666655 3899987 678888886644 234668999999998
Q ss_pred EccC
Q 000177 1734 LRRN 1737 (1922)
Q Consensus 1734 s~~d 1737 (1922)
.+-.
T Consensus 406 Nk~s 409 (595)
T 1fwx_A 406 SKFS 409 (595)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 5433
No 227
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.12 E-value=0.001 Score=81.20 Aligned_cols=168 Identities=5% Similarity=-0.003 Sum_probs=101.3
Q ss_pred CeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCcceEecc--ceeEEEcCCCCEEEEeecCCCCC--eEEEEECCCC
Q 000177 1553 PVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGPMHSFEG--CKAARFSNSGNLFAALPTETSDR--GILLYDIQTY 1627 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g--h~sVaFSPDG~~LaSgS~~S~Dg--tIrIWDlrTg 1627 (1922)
....| +|+++++++++.. ++.|++||..+ +........ ..+++|+|+++.++.+ ..++ .|.+||..++
T Consensus 132 ~P~~l--a~d~~g~lyv~d~~~~~I~~id~~~--g~~~~~~~~~~~~~ia~~~~g~~l~~~---d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 132 YMWGI--AAVGNNTVLAYQRDDPRVRLISVDD--NKVTTVHPGFKGGKPAVTKDKQRVYSI---GWEGTHTVYVYMKASG 204 (409)
T ss_dssp CEEEE--EECSTTEEEEEETTTTEEEEEETTT--TEEEEEEETCCBCBCEECTTSSEEEEE---BSSTTCEEEEEEGGGT
T ss_pred CceEE--EEeCCCCEEEEecCCCcEEEEECCC--CEEEEeeccCCCCceeEecCCCcEEEE---ecCCCceEEEEEcCCC
Confidence 56778 7889999888854 78999999986 433322221 1229999999988887 3333 8999998876
Q ss_pred ceeeeeccccccccCCCCcceEEEEcC-CCCeEeecc----EEEEcCCCcceee----eccCCC--ce-EEEEecCCCEE
Q 000177 1628 QLEAKLSDTSVNLTGRGHAYSQIHFSP-SDTMLLWNG----ILWDRRNSVPVHR----FDQFTD--HG-GGGFHPAGNEV 1695 (1922)
Q Consensus 1628 k~i~tL~d~s~~~~~~gh~~~vVaFSP-dG~lLaSgg----rLWDlrtgk~I~k----f~gh~~--~V-sVaFSPdG~~L 1695 (1922)
.....+.... .........++++| ++.++++.. ..||..++..... ..+... +. .++|+|++..|
T Consensus 205 ~~~~~~g~~~---~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 205 WAPTRIGQLG---STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TCEEEEEECC---TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred ceeEEeeecc---chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 5544331000 00122233489999 566666443 6788776653221 222222 24 89999965544
Q ss_pred EEEe----E--EEecCCCeEEEEEcCCC-----------------ceeEEEccCCCEEEE
Q 000177 1696 IINS----E--VWDLRKFRLLRSVPSLD-----------------QTTITFNARGDVIYA 1732 (1922)
Q Consensus 1696 ASGS----e--IWDLrTgklL~tl~gH~-----------------~~sVaFSPdG~~LaS 1732 (1922)
..+. + .|+.. ++ +.++.++. ...++|+|+|+++++
T Consensus 282 yv~d~~~~~I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 282 YMSDQNLSSVYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp EEEETTTTEEEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred EEEeCCCCEEEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 4443 3 45554 33 44444432 268999999994444
No 228
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.08 E-value=0.00012 Score=84.86 Aligned_cols=189 Identities=7% Similarity=0.060 Sum_probs=122.8
Q ss_pred eeeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceeeeccCCCC-eeEEEeeecCCCcEEEE-ecC
Q 000177 1499 RPWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTK--ELKIFDSNSSSPLESCTSHQAP-VTLVQSHLSGETQLLLS-SSS 1573 (1922)
Q Consensus 1499 rpirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DG--tIkIWDl~tgk~l~tL~gHss~-VtsLq~afSpDG~lLaS-SsD 1573 (1922)
+.++++ .|.... ...+.|+ ++.+..+.+.+| .|+++|+.+++.+.++.-.... --.+ .+..+ ++... -.+
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGi--t~~g~-~ly~ltw~~ 106 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGI--SDWKD-KIVGLTWKN 106 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEE--EEETT-EEEEEESSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEE--EEeCC-EEEEEEeeC
Confidence 445555 444233 4678898 677777777766 8999999999998887533221 1234 33333 33333 348
Q ss_pred CcEEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCc---ceE
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHA---YSQ 1649 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~---~~v 1649 (1922)
+.+.+||..+ .+.+.++.-- ....++++++.|+.+ ...+.|.++|..+.+.+.++.... .+.. .+-
T Consensus 107 ~~v~v~D~~t--~~~~~ti~~~~eG~glt~dg~~L~~S---dGs~~i~~iDp~T~~v~~~I~V~~-----~g~~~~~lNE 176 (262)
T 3nol_A 107 GLGFVWNIRN--LRQVRSFNYDGEGWGLTHNDQYLIMS---DGTPVLRFLDPESLTPVRTITVTA-----HGEELPELNE 176 (262)
T ss_dssp SEEEEEETTT--CCEEEEEECSSCCCCEEECSSCEEEC---CSSSEEEEECTTTCSEEEEEECEE-----TTEECCCEEE
T ss_pred CEEEEEECcc--CcEEEEEECCCCceEEecCCCEEEEE---CCCCeEEEEcCCCCeEEEEEEecc-----CCccccccce
Confidence 9999999998 7777777531 223444677777775 336889999999999988876211 1111 122
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccC-----------CCce--EEEEecCCCEEEEEeEEEe
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF-----------TDHG--GGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh-----------~~~V--sVaFSPdG~~LASGSeIWD 1703 (1922)
+.|. +|++++..- .+.|..+++.+.+++.. ...+ .++|+|+++.|.+.++.|.
T Consensus 177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 5665 676655432 78888888887777532 0122 7889998888888887664
No 229
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.06 E-value=0.00014 Score=84.57 Aligned_cols=193 Identities=6% Similarity=0.038 Sum_probs=123.2
Q ss_pred ceeeEEecCCCCC-CEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCCceeeecc-CCCCeeEEEeeecCCCcEEEEe-c
Q 000177 1498 FRPWRTCRDDAGA-LLTCITFLGDSSHIAVGSH--TKELKIFDSNSSSPLESCTS-HQAPVTLVQSHLSGETQLLLSS-S 1572 (1922)
Q Consensus 1498 frpirtLrgH~d~-~Vt~LaFSPDG~lLASGS~--DGtIkIWDl~tgk~l~tL~g-Hss~VtsLq~afSpDG~lLaSS-s 1572 (1922)
++.+.++ .|... ....+.|++|+.+.++.+. ++.|.++|+.+++.+.++.- .......+ .+.. +++.++. .
T Consensus 9 ~~vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi--~~~g-~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGL--TLLN-EKLYQVVWL 84 (266)
T ss_dssp EEEEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEE--EEET-TEEEEEETT
T ss_pred ceEEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEE--EEeC-CEEEEEEec
Confidence 3445555 34412 3578999998754444443 58999999999999888742 22222345 4443 2444444 4
Q ss_pred CCcEEEeccCCCCCCcceEec-c-ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC-cceE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFE-G-CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH-AYSQ 1649 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~-g-h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh-~~~v 1649 (1922)
++.+.++|..+ .+.+.++. + -....+++||++++.+ ..+++|.++|..+.+.+.++....- +... ..+-
T Consensus 85 ~~~v~viD~~t--~~v~~~i~~g~~~g~glt~Dg~~l~vs---~gs~~l~viD~~t~~v~~~I~Vg~~---~~p~~~~ne 156 (266)
T 2iwa_A 85 KNIGFIYDRRT--LSNIKNFTHQMKDGWGLATDGKILYGS---DGTSILYEIDPHTFKLIKKHNVKYN---GHRVIRLNE 156 (266)
T ss_dssp CSEEEEEETTT--TEEEEEEECCSSSCCEEEECSSSEEEE---CSSSEEEEECTTTCCEEEEEECEET---TEECCCEEE
T ss_pred CCEEEEEECCC--CcEEEEEECCCCCeEEEEECCCEEEEE---CCCCeEEEEECCCCcEEEEEEECCC---Cccccccee
Confidence 89999999987 67777773 2 2334567788877776 3478999999999998888761100 0001 1233
Q ss_pred EEEcCCCCeEeecc-----EEEEcCCCcceeeeccC--------------CCceEEEEecCCCEEEEEeEEEe
Q 000177 1650 IHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF--------------TDHGGGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh--------------~~~VsVaFSPdG~~LASGSeIWD 1703 (1922)
+.|. +|.++++.. .+.|..+++.+.++.-. .....++|+|+++.+.+.++.|+
T Consensus 157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 6676 676655442 77888888888777532 11137888888887777775443
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.05 E-value=0.00025 Score=92.25 Aligned_cols=251 Identities=12% Similarity=0.085 Sum_probs=157.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccC-C----CCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCCCc
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSH-Q----APVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gH-s----s~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~gk~ 1588 (1922)
++..|++++.|+.|..+|..+|+.+-++..+ . ..+.+- -...++.+++.+. ++.|..||..+ ++.
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~--p~v~~~~v~v~~~~~~~~~~g~v~a~D~~t--G~~ 202 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGA--PRVFKGKVIIGNGGAEYGVRGYITAYDAET--GER 202 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSC--CEEETTEEEECCBCTTTCCBCEEEEEETTT--CCE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccC--cEEECCEEEEEecccccCCCCEEEEEECCC--CcE
Confidence 3568899999999999999999998877654 2 122211 0111455555543 68899999988 777
Q ss_pred ceEeccc------------------------------------eeEEEcCCCCEEEEeecCC------------CC----
Q 000177 1589 MHSFEGC------------------------------------KAARFSNSGNLFAALPTET------------SD---- 1616 (1922)
Q Consensus 1589 l~tf~gh------------------------------------~sVaFSPDG~~LaSgS~~S------------~D---- 1616 (1922)
+.++... ..++++|++..++.+..+. .|
T Consensus 203 ~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 203 KWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred EEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeee
Confidence 6655321 2467888888888772211 11
Q ss_pred CeEEEEECCCCceeeeeccccccc-cCCCCcceE-EEEcCCC---CeEeecc-----EEEEcCCCcceeeeccC------
Q 000177 1617 RGILLYDIQTYQLEAKLSDTSVNL-TGRGHAYSQ-IHFSPSD---TMLLWNG-----ILWDRRNSVPVHRFDQF------ 1680 (1922)
Q Consensus 1617 gtIrIWDlrTgk~i~tL~d~s~~~-~~~gh~~~v-VaFSPdG---~lLaSgg-----rLWDlrtgk~I~kf~gh------ 1680 (1922)
+.|..+|..||+.+..+.-..... .......++ +....+| ..++.++ +++|..+|+++..+...
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 259999999999988775110000 000011122 3444467 4555544 78888888877655321
Q ss_pred ------------------------------CCceEEEEecCCCEEEEE--------------------------------
Q 000177 1681 ------------------------------TDHGGGGFHPAGNEVIIN-------------------------------- 1698 (1922)
Q Consensus 1681 ------------------------------~~~VsVaFSPdG~~LASG-------------------------------- 1698 (1922)
.++-.++|+|++..++++
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 111256889988777663
Q ss_pred --------------e--EEEecCCCeEEEEEcCCC-ceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEE
Q 000177 1699 --------------S--EVWDLRKFRLLRSVPSLD-QTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTV 1761 (1922)
Q Consensus 1699 --------------S--eIWDLrTgklL~tl~gH~-~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~ 1761 (1922)
+ ..||+.|++.+-+++... .+...+...|..++.+. .+..++.+
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~-------------------~dg~l~a~ 503 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT-------------------ADGRLVAY 503 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-------------------TTSEEEEE
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC-------------------CCCcEEEE
Confidence 2 368888888887776332 24556667777777762 23568889
Q ss_pred ecCCCceeeeeccCCce--EEEEEcCCCceEEEE
Q 000177 1762 DAINYSDIATIPVDRCV--LDFATERTDSFVGLI 1793 (1922)
Q Consensus 1762 Da~dys~IaTidvkr~I--~dLa~SPdds~LAVV 1793 (1922)
|..+.+.+.++.....+ .-+.+..+|+...++
T Consensus 504 D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 504 HAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 99999999888775543 233445777644444
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.03 E-value=0.00061 Score=88.76 Aligned_cols=248 Identities=13% Similarity=0.089 Sum_probs=154.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeecc--CCCCeeEEEeeecC---CCcEEEEec------CCcEEEeccCCCCCCcc
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTS--HQAPVTLVQSHLSG---ETQLLLSSS------SQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~g--Hss~VtsLq~afSp---DG~lLaSSs------DgtVkLWDl~t~~gk~l 1589 (1922)
+..|++++.|+.|..||..+|+.+-.+.. +......+ ..+| ++.+++.+. ++.|..||..+ ++.+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~--~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~t--G~~~ 196 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTI--TGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAET--GKEA 196 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBC--CSCCEEETTEEEECCBCTTTCCBCEEEEEETTT--CCEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccc--cCCcEEECCEEEEEeCCCccCCCCEEEEEECCC--CcEE
Confidence 56889999999999999999998876643 22111111 1122 566665532 68899999998 7777
Q ss_pred eEeccc-----------------------------------eeEEEcCCCCEEEEeecCCCCC-----------------
Q 000177 1590 HSFEGC-----------------------------------KAARFSNSGNLFAALPTETSDR----------------- 1617 (1922)
Q Consensus 1590 ~tf~gh-----------------------------------~sVaFSPDG~~LaSgS~~S~Dg----------------- 1617 (1922)
.++... ..+++.|++.+++.+ +.++
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~---~~~g~~w~~~~~~~~~gd~~y 273 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIG---VGNGSLWDPKWRSQAKGDNLF 273 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEE---CCCEESSCHHHHHTTCSCCTT
T ss_pred EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEe---CCCCCccccCCCCCCCCCcee
Confidence 665310 146788888888887 4443
Q ss_pred --eEEEEECCCCceeeeeccccccccCCCCcc-eE-EEEcCCCC---eEeecc-----EEEEcCCCcceeeecc------
Q 000177 1618 --GILLYDIQTYQLEAKLSDTSVNLTGRGHAY-SQ-IHFSPSDT---MLLWNG-----ILWDRRNSVPVHRFDQ------ 1679 (1922)
Q Consensus 1618 --tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~-~v-VaFSPdG~---lLaSgg-----rLWDlrtgk~I~kf~g------ 1679 (1922)
.|..||..||+.+..+.......-...... .+ ..+..+|+ .++.++ ++||..+|+++.....
T Consensus 274 ~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 353 (689)
T 1yiq_A 274 LSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWT 353 (689)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccc
Confidence 499999999999887751100000000111 11 22223554 455444 7889888887633211
Q ss_pred ----------------------------------CCCceEEEEecCCCEEEEE---------------------------
Q 000177 1680 ----------------------------------FTDHGGGGFHPAGNEVIIN--------------------------- 1698 (1922)
Q Consensus 1680 ----------------------------------h~~~VsVaFSPdG~~LASG--------------------------- 1698 (1922)
...+-.++|+|+...|+++
T Consensus 354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g 433 (689)
T 1yiq_A 354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG 433 (689)
T ss_dssp EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence 1111247888887776654
Q ss_pred ---------------------e--EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCC
Q 000177 1699 ---------------------S--EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPL 1754 (1922)
Q Consensus 1699 ---------------------S--eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~ 1754 (1922)
+ ..||+.|++.+-+++.+.. ....+...|.+++.+. .
T Consensus 434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt-------------------~ 494 (689)
T 1yiq_A 434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS-------------------A 494 (689)
T ss_dssp SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-------------------T
T ss_pred ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC-------------------C
Confidence 1 2688888888877765443 3445666777777762 3
Q ss_pred cceEEEEecCCCceeeeeccCCceE--EEEEcCCCceEEEEe
Q 000177 1755 FAAFRTVDAINYSDIATIPVDRCVL--DFATERTDSFVGLIT 1794 (1922)
Q Consensus 1755 ~ssFrt~Da~dys~IaTidvkr~I~--dLa~SPdds~LAVVe 1794 (1922)
+..|+.+|..+.+.+..+.....+. -+.+..+|+...++.
T Consensus 495 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 495 DGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFM 536 (689)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEE
Confidence 4568999999999998887754432 355667887444443
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.01 E-value=0.00035 Score=89.11 Aligned_cols=203 Identities=11% Similarity=0.094 Sum_probs=133.2
Q ss_pred CCcEEEEec--CCcEEEeccCCCCCCcce--Eec---cceeEEE-c-CCCCEEEEeec---------------CCCCCeE
Q 000177 1564 ETQLLLSSS--SQDVHLWNASSIAGGPMH--SFE---GCKAARF-S-NSGNLFAALPT---------------ETSDRGI 1619 (1922)
Q Consensus 1564 DG~lLaSSs--DgtVkLWDl~t~~gk~l~--tf~---gh~sVaF-S-PDG~~LaSgS~---------------~S~DgtI 1619 (1922)
||+++..+. +..|.+.|+.+ .++.. .+. +...+++ + |+++++++++. ...++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t--~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDV--MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTT--TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCC--ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 788887753 66799999998 66655 332 2367777 5 89999887731 1245689
Q ss_pred EEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------------------------------------
Q 000177 1620 LLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------------------------------------ 1663 (1922)
Q Consensus 1620 rIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------------------------------------ 1663 (1922)
.++|..+.+.+.++.- +..-.-++++|+|+++++.+
T Consensus 178 tvID~~t~~v~~qI~V--------gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk 249 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLV--------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 249 (595)
T ss_dssp EEEETTTTEEEEEEEE--------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred EEEECCCCeEEEEEEe--------CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCC
Confidence 9999999988887751 11112267777777766332
Q ss_pred -------EEEEcCC--Ccc-eeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCe------------EEEEEc-
Q 000177 1664 -------ILWDRRN--SVP-VHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFR------------LLRSVP- 1714 (1922)
Q Consensus 1664 -------rLWDlrt--gk~-I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgk------------lL~tl~- 1714 (1922)
.+.|.++ ++. +..+.......++.|+|||+++++++ .++|+.+.+ .+..++
T Consensus 250 ~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v 329 (595)
T 1fwx_A 250 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL 329 (595)
T ss_dssp SEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred eeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence 4566665 444 44554444555899999999999988 388988653 444444
Q ss_pred CCCceeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCC----------CceeeeeccCCceEEEEE-
Q 000177 1715 SLDQTTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAIN----------YSDIATIPVDRCVLDFAT- 1783 (1922)
Q Consensus 1715 gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~d----------ys~IaTidvkr~I~dLa~- 1783 (1922)
|.....++|+|+| ++|+...-+ +.+..|+..+ ...+.++++....-...+
T Consensus 330 G~gP~h~aF~~dG-~aY~t~~ld------------------sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~ 390 (595)
T 1fwx_A 330 GLGPLHTAFDGRG-NAYTSLFLD------------------SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTV 390 (595)
T ss_dssp CSCEEEEEECTTS-EEEEEETTT------------------TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEET
T ss_pred CCCcceEEECCCC-eEEEEEecC------------------CcEEEEEhhHhhhhhcccccceeEEEeecccccccceec
Confidence 3333899999999 888875432 2333343322 345666666655433444
Q ss_pred -----cCCCceEEEEec
Q 000177 1784 -----ERTDSFVGLITM 1795 (1922)
Q Consensus 1784 -----SPdds~LAVVe~ 1795 (1922)
+|+|+++.+...
T Consensus 391 ~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 391 MGETLDATNDWLVCLSK 407 (595)
T ss_dssp TTTSTTCCSSEEEEEES
T ss_pred cceEeCCCCCEEEEcCC
Confidence 689999887763
No 233
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=97.99 E-value=0.00011 Score=86.81 Aligned_cols=182 Identities=8% Similarity=0.002 Sum_probs=113.4
Q ss_pred CCCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCCceeeecc------CCCCeeEEEeeecCC-CcEEEE-e-
Q 000177 1506 DDAGALLTCITFLGDSSHIAVGSH-----TKELKIFDSNSSSPLESCTS------HQAPVTLVQSHLSGE-TQLLLS-S- 1571 (1922)
Q Consensus 1506 gH~d~~Vt~LaFSPDG~lLASGS~-----DGtIkIWDl~tgk~l~tL~g------Hss~VtsLq~afSpD-G~lLaS-S- 1571 (1922)
+|. ..+..++|+++|+++++-+. ++.|.+||+.+++.+.++.. +...+..+ .++++ +.++++ .
T Consensus 64 ~~~-~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v--~vd~~~g~~yvtd~~ 140 (343)
T 2qe8_A 64 ITF-DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDL--AVDLIHNFVYISDPA 140 (343)
T ss_dssp CCC-SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEE--EEETTTTEEEEEECC
T ss_pred cce-eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceE--EEecCCCEEEEEcCc
Confidence 355 67999999999987776554 68899999999987776642 23456888 78875 555566 3
Q ss_pred --cCCcEEEeccCCCCCCcceEe---------------------------------ccceeEEEcCCCCEEEEeecCCCC
Q 000177 1572 --SSQDVHLWNASSIAGGPMHSF---------------------------------EGCKAARFSNSGNLFAALPTETSD 1616 (1922)
Q Consensus 1572 --sDgtVkLWDl~t~~gk~l~tf---------------------------------~gh~sVaFSPDG~~LaSgS~~S~D 1616 (1922)
.++.|.+||+.+ ++..+.+ .+.+.++|+|+|++|+.+. ...
T Consensus 141 ~~~~~~i~v~d~~~--g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~--~~~ 216 (343)
T 2qe8_A 141 PDDKAALIRVDLQT--GLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP--MHS 216 (343)
T ss_dssp SGGGCEEEEEETTT--CCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE--SSC
T ss_pred cCCCCeEEEEECCC--CCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe--CCC
Confidence 578899999875 3322222 1236799999999888773 222
Q ss_pred CeEEEEECCC---Cce-----eeeeccccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccC-CC
Q 000177 1617 RGILLYDIQT---YQL-----EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF-TD 1682 (1922)
Q Consensus 1617 gtIrIWDlrT---gk~-----i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh-~~ 1682 (1922)
+.+..++... +.. ...+. .....+ ...-++++++|.++++.. .+||..+++........ ..
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~~----~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~ 291 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKIE----RYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLS 291 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTCE----EEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGS
T ss_pred CeEEEEEHHHhcCCCCChhhhhcceE----ecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCcee
Confidence 3454444321 100 00000 000011 112389999999888765 78998566533222221 22
Q ss_pred ce-EEEEecCCCEEEEEe
Q 000177 1683 HG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1683 ~V-sVaFSPdG~~LASGS 1699 (1922)
.. +++|.++|..+++.+
T Consensus 292 ~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 292 WTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CEEEEEECTTSCEEEEEC
T ss_pred cCCeeEECCCCcEEEEeC
Confidence 23 899999998877776
No 234
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.99 E-value=0.00015 Score=84.29 Aligned_cols=190 Identities=10% Similarity=0.105 Sum_probs=122.5
Q ss_pred eeeEEecCCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCee--EEEeeecCCCcEEEEecCCc
Q 000177 1499 RPWRTCRDDAGAL-LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVT--LVQSHLSGETQLLLSSSSQD 1575 (1922)
Q Consensus 1499 rpirtLrgH~d~~-Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~Vt--sLq~afSpDG~lLaSSsDgt 1575 (1922)
+.++++ .|.... ...+.|+ ++.+.++.+.+|.|+++|+.+++.+.++ - ....+ .+ .+..+.-|+++-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGi--t~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGL--ASDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEE--EECSSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEE--EEeCCEEEEEEccCCE
Confidence 345555 344233 4678888 4667778888899999999999998877 2 22333 35 4444433333345999
Q ss_pred EEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCC-cceEEEEc
Q 000177 1576 VHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGH-AYSQIHFS 1653 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh-~~~vVaFS 1653 (1922)
+.+||..+ .+.+.++.-- ....+.++++.|+.+ ..++.|.++|..+.+.+.++.... .+... ..+-+.|.
T Consensus 118 v~V~D~~T--l~~~~ti~~~~eGwGLt~Dg~~L~vS---dGs~~l~~iDp~T~~v~~~I~V~~---~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 118 LFTWSGMP--PQRERTTRYSGEGWGLCYWNGKLVRS---DGGTMLTFHEPDGFALVGAVQVKL---RGQPVELINELECA 189 (268)
T ss_dssp EEEEETTT--TEEEEEEECSSCCCCEEEETTEEEEE---CSSSEEEEECTTTCCEEEEEECEE---TTEECCCEEEEEEE
T ss_pred EEEEECCc--CcEEEEEeCCCceeEEecCCCEEEEE---CCCCEEEEEcCCCCeEEEEEEeCC---CCcccccccccEEe
Confidence 99999998 7777777531 122334567888776 347899999999999988876211 00011 11235665
Q ss_pred CCCCeEeecc-----EEEEcCCCcceeeeccC------------CCce--EEEEecCCCEEEEEeEEEe
Q 000177 1654 PSDTMLLWNG-----ILWDRRNSVPVHRFDQF------------TDHG--GGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1654 PdG~lLaSgg-----rLWDlrtgk~I~kf~gh------------~~~V--sVaFSPdG~~LASGSeIWD 1703 (1922)
+|++++..- .+.|..+++.+.+++.. ...+ .++|+|+++.|.+.+|.|.
T Consensus 190 -dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 190 -NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp -TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred -CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 676665432 77888888887776432 1123 7888888777777776664
No 235
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.93 E-value=0.00045 Score=79.32 Aligned_cols=192 Identities=13% Similarity=0.121 Sum_probs=120.1
Q ss_pred ceeeEEecCCCC-CCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceeeeccCCCC-eeEEEeeecCCCcEEEE-ec
Q 000177 1498 FRPWRTCRDDAG-ALLTCITFLGDSSHIAVGSHTK--ELKIFDSNSSSPLESCTSHQAP-VTLVQSHLSGETQLLLS-SS 1572 (1922)
Q Consensus 1498 frpirtLrgH~d-~~Vt~LaFSPDG~lLASGS~DG--tIkIWDl~tgk~l~tL~gHss~-VtsLq~afSpDG~lLaS-Ss 1572 (1922)
++.++++ .|.. .....+.|++ +.+..+.+.+| .|+++|+.+++.+.++.-.... --.+ .+.. +++... -.
T Consensus 9 ~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi--~~~~-~~ly~ltw~ 83 (243)
T 3mbr_X 9 YRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGI--VAWR-DRLIQLTWR 83 (243)
T ss_dssp EEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEE--EEET-TEEEEEESS
T ss_pred eEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEE--EEeC-CEEEEEEee
Confidence 3455666 4542 3456889986 55666666654 8999999999998877433221 1233 3332 333333 34
Q ss_pred CCcEEEeccCCCCCCcceEeccc-eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC-CcceEE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGC-KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG-HAYSQI 1650 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh-~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g-h~~~vV 1650 (1922)
++.+.+||..+ .+.+.++.-- ....+.++++.|+.+ ..++.|.++|..+.+.+.++.... .+.. ...+-+
T Consensus 84 ~~~v~v~D~~t--l~~~~ti~~~~~Gwglt~dg~~L~vS---dgs~~l~~iDp~t~~~~~~I~V~~---~g~~~~~lNeL 155 (243)
T 3mbr_X 84 NHEGFVYDLAT--LTPRARFRYPGEGWALTSDDSHLYMS---DGTAVIRKLDPDTLQQVGSIKVTA---GGRPLDNLNEL 155 (243)
T ss_dssp SSEEEEEETTT--TEEEEEEECSSCCCEEEECSSCEEEE---CSSSEEEEECTTTCCEEEEEECEE---TTEECCCEEEE
T ss_pred CCEEEEEECCc--CcEEEEEeCCCCceEEeeCCCEEEEE---CCCCeEEEEeCCCCeEEEEEEEcc---CCcccccceee
Confidence 89999999998 7777777531 223334567766665 347889999999999888876211 0001 111224
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcceeeeccC------------CCce--EEEEecCCCEEEEEeEEEe
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQF------------TDHG--GGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh------------~~~V--sVaFSPdG~~LASGSeIWD 1703 (1922)
.|. +|++++..- .+.|..+|+.+..++-. ...+ .++|+|+++.|.+.++.|.
T Consensus 156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 444 666555432 78888888887776521 1123 7888888887777776664
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.89 E-value=1.9e-06 Score=103.49 Aligned_cols=182 Identities=11% Similarity=0.014 Sum_probs=89.4
Q ss_pred cCceeeEEecCCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCc
Q 000177 1496 SRFRPWRTCRDDAGALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQD 1575 (1922)
Q Consensus 1496 srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgt 1575 (1922)
.+++.+..+.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+..+........+.+..++.+++.+.|+.
T Consensus 27 ~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~ 103 (369)
T 2hz6_A 27 RTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDI 103 (369)
T ss_dssp TTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEE
T ss_pred CCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCE
Confidence 34444444443 234445556678888888999999999999998877665442211100001123444444466999
Q ss_pred EEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC
Q 000177 1576 VHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd 1655 (1922)
|..||..+ ++.+.++..+....++|++..++++ +.|+.|+.||.++|+.+..+... .+ ....++++
T Consensus 104 v~a~D~~t--G~~~w~~~~~~~~~~~p~~~~v~~~---~~dg~v~a~d~~tG~~~W~~~~~-------~~--~~~~~~~~ 169 (369)
T 2hz6_A 104 WYVIDLLT--GEKQQTLSSAFADSLSPSTSLLYLG---RTEYTITMYDTKTRELRWNATYF-------DY--AASLPEDD 169 (369)
T ss_dssp EEEECCC------------------------EEEE---EEEEEEECCCSSSSSCCCEEEEE-------EE--CCBCCCCC
T ss_pred EEEEECCC--CcEEEEecCCCcccccccCCEEEEE---ecCCEEEEEECCCCCEEEeEecc-------cc--cCccccCC
Confidence 99999998 8888777766556778888888888 67899999999999987766410 00 11222332
Q ss_pred ----CCeEeecc----EEEEcCCCcceeeeccCCCce-EEEEecCCCE
Q 000177 1656 ----DTMLLWNG----ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNE 1694 (1922)
Q Consensus 1656 ----G~lLaSgg----rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~ 1694 (1922)
+.+++... ..||..+|+.+.++......+ ...++++|..
T Consensus 170 ~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 170 VDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp TTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred ccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 34444322 789999999888876443333 3455667753
No 237
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.80 E-value=0.00074 Score=87.82 Aligned_cols=206 Identities=13% Similarity=0.194 Sum_probs=136.5
Q ss_pred CCEEEEEeC------CCcEEEEECCCCCceeeeccCCCC--------------------------------eeEEEeeec
Q 000177 1521 SSHIAVGSH------TKELKIFDSNSSSPLESCTSHQAP--------------------------------VTLVQSHLS 1562 (1922)
Q Consensus 1521 G~lLASGS~------DGtIkIWDl~tgk~l~tL~gHss~--------------------------------VtsLq~afS 1562 (1922)
+..|++++. +|.|+.||..+|+.+-++...... ...+ +++
T Consensus 174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~--~~d 251 (677)
T 1kb0_A 174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSM--TFD 251 (677)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCE--EEE
T ss_pred CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccce--eEc
Confidence 345666554 799999999999988766432211 1234 667
Q ss_pred CCCcEEEEec-CC-------------------cEEEeccCCCCCCcceEecc--c-----------eeEEEcCCC---CE
Q 000177 1563 GETQLLLSSS-SQ-------------------DVHLWNASSIAGGPMHSFEG--C-----------KAARFSNSG---NL 1606 (1922)
Q Consensus 1563 pDG~lLaSSs-Dg-------------------tVkLWDl~t~~gk~l~tf~g--h-----------~sVaFSPDG---~~ 1606 (1922)
+++.+|..+. ++ +|..+|..+ ++.+..++. + ..+....+| +.
T Consensus 252 ~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~ 329 (677)
T 1kb0_A 252 AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKV 329 (677)
T ss_dssp TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEE
T ss_pred CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeE
Confidence 7777776643 32 488999988 787776653 1 112222366 56
Q ss_pred EEEeecCCCCCeEEEEECCCCceeeeecccccc---------------------------ccCCCCcc-eEEEEcCCCCe
Q 000177 1607 FAALPTETSDRGILLYDIQTYQLEAKLSDTSVN---------------------------LTGRGHAY-SQIHFSPSDTM 1658 (1922)
Q Consensus 1607 LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~---------------------------~~~~gh~~-~vVaFSPdG~l 1658 (1922)
++.+ +.+|.++++|..+|+.+..+.-.... ....|... ..++|+|++.+
T Consensus 330 l~~~---~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~ 406 (677)
T 1kb0_A 330 ILHA---PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL 406 (677)
T ss_dssp EEEC---CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred EEEE---CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence 7777 78999999999999988766411000 00011111 13788888777
Q ss_pred Eeec----------------------------------------------c--EEEEcCCCcceeeeccCCCceEEEEec
Q 000177 1659 LLWN----------------------------------------------G--ILWDRRNSVPVHRFDQFTDHGGGGFHP 1690 (1922)
Q Consensus 1659 LaSg----------------------------------------------g--rLWDlrtgk~I~kf~gh~~~VsVaFSP 1690 (1922)
++.. + ..||+.+++.+.++.......+..+..
T Consensus 407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~ 486 (677)
T 1kb0_A 407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT 486 (677)
T ss_dssp EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE
T ss_pred EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe
Confidence 6541 3 679999999888876544334556777
Q ss_pred CCCEEEEEe-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1691 AGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1691 dG~~LASGS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
.|..+++++ .+||.++++.+.++..... .-+.|.++|+.+++.
T Consensus 487 ~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 487 AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 778888777 4899999999999873332 678888999766554
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.80 E-value=0.0065 Score=68.53 Aligned_cols=204 Identities=6% Similarity=-0.045 Sum_probs=121.4
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEe-cCCcEEEeccCCCCCC
Q 000177 1511 LLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSS-SSQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSS-sDgtVkLWDl~t~~gk 1587 (1922)
.+..++|++++..|+ +-...+.|.+++...+.....+...-.....+ ++++++ .++++. ..+.|.++++.. .
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~i--a~d~~~~~lyv~d~~~~~I~~~~~~g---~ 111 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGI--ALDHLGRTIFWTDSQLDRIEVAKMDG---T 111 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEE--EEETTTTEEEEEETTTTEEEEEETTS---C
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEE--EEEecCCeEEEEECCCCEEEEEEcCC---C
Confidence 467899999766555 44567899999997665443333333466788 788865 455553 477899999864 2
Q ss_pred cceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-e
Q 000177 1588 PMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-W 1661 (1922)
Q Consensus 1588 ~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-S 1661 (1922)
....+ ...+.++++|++.+|+.+......+.|..+++.. .....+... .......++|+|++..|. +
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~------~~~~P~gia~d~~~~~lyv~ 184 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQD------NLGLPNGLTFDAFSSQLCWV 184 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECT------TCSCEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEEC------CCCCCcEEEEcCCCCEEEEE
Confidence 22222 2237899999766555442211246888888764 322323200 112223499999876554 4
Q ss_pred cc-----EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe------EEEecCCCeEEEEEcCCC---ceeEEEccCC
Q 000177 1662 NG-----ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS------EVWDLRKFRLLRSVPSLD---QTTITFNARG 1727 (1922)
Q Consensus 1662 gg-----rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS------eIWDLrTgklL~tl~gH~---~~sVaFSPdG 1727 (1922)
.. ..+|+........+.+...+..+++. +..|..+. .++|..+++.+.+++... .+.+++.|++
T Consensus 185 d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 185 DAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp ETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred ECCCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 33 56666543333333333334456554 44444443 367888899999887433 3788888887
Q ss_pred C
Q 000177 1728 D 1728 (1922)
Q Consensus 1728 ~ 1728 (1922)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 5
No 239
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.70 E-value=0.015 Score=65.50 Aligned_cols=232 Identities=8% Similarity=0.030 Sum_probs=129.4
Q ss_pred CEEEEEeCCCcEEEEECCCCCce-----eeeccCCCCeeEEEeeecCCCc-EEEEe-cCCcEEEeccCCCCCCcceEe--
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPL-----ESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQDVHLWNASSIAGGPMHSF-- 1592 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l-----~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgtVkLWDl~t~~gk~l~tf-- 1592 (1922)
.+|+.+.. +.|+.++++..... ..+......+..+ +|++++. ++++. ..+.|..+++.. ......+
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi--~~d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~~~~~ 76 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGL--AFDCVDKVVYWTDISEPSIGRASLHG--GEPTTIIRQ 76 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEE--EEETTTTEEEEEETTTTEEEEEESSS--CCCEEEECT
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEE--EEecCCCEEEEEECCCCEEEEEecCC--CCcEEEEEC
Confidence 44555553 47888888654321 1122122345677 7888654 44453 478999999875 3322222
Q ss_pred --ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC-CcceEEEEcCCC-CeEeec-----c
Q 000177 1593 --EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG-HAYSQIHFSPSD-TMLLWN-----G 1663 (1922)
Q Consensus 1593 --~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g-h~~~vVaFSPdG-~lLaSg-----g 1663 (1922)
.....++++|++..++.+ +...+.|.++|+........+. .+ ....-++++|++ .++++. +
T Consensus 77 ~~~~p~~ia~d~~~~~lyv~--d~~~~~I~~~~~~g~~~~~~~~--------~~~~~P~~i~vd~~~g~lyv~~~~~~~~ 146 (267)
T 1npe_A 77 DLGSPEGIALDHLGRTIFWT--DSQLDRIEVAKMDGTQRRVLFD--------TGLVNPRGIVTDPVRGNLYWTDWNRDNP 146 (267)
T ss_dssp TCCCEEEEEEETTTTEEEEE--ETTTTEEEEEETTSCSCEEEEC--------SSCSSEEEEEEETTTTEEEEEECCSSSC
T ss_pred CCCCccEEEEEecCCeEEEE--ECCCCEEEEEEcCCCCEEEEEE--------CCCCCccEEEEeeCCCEEEEEECCCCCc
Confidence 123789999976655554 2556889999987533222221 11 222348999965 444443 2
Q ss_pred EE--EEcCCCcceeeec--cCCCceEEEEecCCCEEEEEe----E--EEecCCCeEEEEEcCCCc-eeEEEccCCCEEEE
Q 000177 1664 IL--WDRRNSVPVHRFD--QFTDHGGGGFHPAGNEVIINS----E--VWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYA 1732 (1922)
Q Consensus 1664 rL--WDlrtgk~I~kf~--gh~~~VsVaFSPdG~~LASGS----e--IWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaS 1732 (1922)
.| +++. +.....+. ....+..++|+|++.+|..+. + ++|+.+......+.+... ..+++ ++..|+.
T Consensus 147 ~I~~~~~d-g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyv 223 (267)
T 1npe_A 147 KIETSHMD-GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYY 223 (267)
T ss_dssp EEEEEETT-SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEE
T ss_pred EEEEEecC-CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEE
Confidence 43 4443 33333332 222344899999887776655 2 566654333333332222 45554 3566666
Q ss_pred EEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeeccCC--ceEEEEEcCCCce
Q 000177 1733 ILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDR--CVLDFATERTDSF 1789 (1922)
Q Consensus 1733 gs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvkr--~I~dLa~SPdds~ 1789 (1922)
+.. ....+..++..+.+.+.++.... ..+.+++.|+++.
T Consensus 224 a~~------------------~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~~ 264 (267)
T 1npe_A 224 TDW------------------KTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQCP 264 (267)
T ss_dssp EET------------------TTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC-
T ss_pred EEC------------------CCCeEEEEeCCCCCceEEEccccccccceeeecCccCC
Confidence 521 12345677777777777776543 4677778777763
No 240
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.68 E-value=0.0012 Score=85.95 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=130.2
Q ss_pred CCCcEEEEECCCCCceeeecc--CC----------------------------CCe-eEEEeeecCCCcEEEEec-CC--
Q 000177 1529 HTKELKIFDSNSSSPLESCTS--HQ----------------------------APV-TLVQSHLSGETQLLLSSS-SQ-- 1574 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~g--Hs----------------------------s~V-tsLq~afSpDG~lLaSSs-Dg-- 1574 (1922)
.+|.|..||..+|+.+-.+.. +. ..+ ..+ ++++++.+|+.+. ++
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~--~~d~~~~~vy~~~~~g~~ 258 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSF--AYDPELNLLYIGVGNGSL 258 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCE--EEETTTTEEEEECCCEES
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccce--eEcCCCCEEEEeCCCCCc
Confidence 378999999999998766631 10 011 134 6778777777653 44
Q ss_pred -----------------cEEEeccCCCCCCcceEecc--c--ee---------EEEcCCCC---EEEEeecCCCCCeEEE
Q 000177 1575 -----------------DVHLWNASSIAGGPMHSFEG--C--KA---------ARFSNSGN---LFAALPTETSDRGILL 1621 (1922)
Q Consensus 1575 -----------------tVkLWDl~t~~gk~l~tf~g--h--~s---------VaFSPDG~---~LaSgS~~S~DgtIrI 1621 (1922)
.|..||..+ ++.+..++. + +. .....+|+ .++.+ +.+|.+++
T Consensus 259 w~~~~~~~~~gd~~y~~~v~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~---~~~G~l~~ 333 (689)
T 1yiq_A 259 WDPKWRSQAKGDNLFLSSIVAVNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA---PKNGFFYV 333 (689)
T ss_dssp SCHHHHHTTCSCCTTTTEEEEEETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC---CTTSEEEE
T ss_pred cccCCCCCCCCCceeeeeEEEEEccC--CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE---CCCCeEEE
Confidence 389999998 888777653 1 11 11112454 56676 78999999
Q ss_pred EECCCCceeeeecccc--cc-----------------------------ccCCCCcc-eEEEEcCCCCeEeec-------
Q 000177 1622 YDIQTYQLEAKLSDTS--VN-----------------------------LTGRGHAY-SQIHFSPSDTMLLWN------- 1662 (1922)
Q Consensus 1622 WDlrTgk~i~tL~d~s--~~-----------------------------~~~~gh~~-~vVaFSPdG~lLaSg------- 1662 (1922)
+|..+|+.+....-.. +. ....+... ..++|+|+..+++..
T Consensus 334 lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~ 413 (689)
T 1yiq_A 334 IDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAY 413 (689)
T ss_dssp EETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEE
T ss_pred EECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEecccccee
Confidence 9999999874432100 00 00001111 126788877665531
Q ss_pred -----------------------------------------c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe
Q 000177 1663 -----------------------------------------G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1663 -----------------------------------------g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+ ..||+.+|+.+.++..+.......+...|..|++++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt 493 (689)
T 1yiq_A 414 YEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGS 493 (689)
T ss_dssp EECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC
T ss_pred eeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEEC
Confidence 3 679999999988887665444556777788888887
Q ss_pred -----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1700 -----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1700 -----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
+.||.+||+.+.++..... .-+.|..+|+..++.
T Consensus 494 ~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~ 535 (689)
T 1yiq_A 494 ADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTF 535 (689)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEE
Confidence 5999999999988874322 678899999866554
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.52 E-value=0.011 Score=69.68 Aligned_cols=200 Identities=12% Similarity=0.036 Sum_probs=113.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccC---------CCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcce
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSH---------QAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gH---------ss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~ 1590 (1922)
++..|++++.++.|..||..+|+.+-.+... ...+.+. ....++.+++.+.++.|..+|..+ ++.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~~~~g~l~a~d~~t--G~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG--VTVSGGHVYIGSEKAQVYALNTSD--GTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE--EEEETTEEEEEETTSEEEEEETTT--CCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC--ceEeCCEEEEEcCCCEEEEEECCC--CCEEE
Confidence 3678888999999999999999987666432 2223222 122356666667799999999988 77766
Q ss_pred EeccceeEEEcC--CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec--c--E
Q 000177 1591 SFEGCKAARFSN--SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN--G--I 1664 (1922)
Q Consensus 1591 tf~gh~sVaFSP--DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg--g--r 1664 (1922)
++.....+.-.| .+..++.+ +.++.|..||..+|+.+..+..............+.+. ++.+++.. + .
T Consensus 128 ~~~~~~~~~~~p~~~~~~v~v~---~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~ 201 (376)
T 3q7m_A 128 QTKVAGEALSRPVVSDGLVLIH---TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FGAAVVGGDNGRVS 201 (376)
T ss_dssp EEECSSCCCSCCEEETTEEEEE---CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TTEEEECCTTTEEE
T ss_pred EEeCCCceEcCCEEECCEEEEE---cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CCEEEEEcCCCEEE
Confidence 654321111111 24466666 67899999999999988776521111000111122221 34444322 1 7
Q ss_pred EEEcCCCcceeeeccCCCc----------e--EEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCceeEEEccCC
Q 000177 1665 LWDRRNSVPVHRFDQFTDH----------G--GGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQTTITFNARG 1727 (1922)
Q Consensus 1665 LWDlrtgk~I~kf~gh~~~----------V--sVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~~sVaFSPdG 1727 (1922)
.+|..+|+.+.++...... + .... .+..++.++ ..+|..+++.+..........+.. ++
T Consensus 202 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~--~~ 277 (376)
T 3q7m_A 202 AVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIV--DG 277 (376)
T ss_dssp EEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEE--ET
T ss_pred EEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceE--EC
Confidence 7888888887766532210 1 1111 133444443 367888888776665322233333 34
Q ss_pred CEEEEE
Q 000177 1728 DVIYAI 1733 (1922)
Q Consensus 1728 ~~LaSg 1733 (1922)
..|+.+
T Consensus 278 ~~l~~~ 283 (376)
T 3q7m_A 278 NRIYLV 283 (376)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 555554
No 242
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.39 E-value=0.022 Score=66.09 Aligned_cols=173 Identities=9% Similarity=0.057 Sum_probs=107.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc--------------------CCCCeeEEEeeecC-CCcEEEE
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS--------------------HQAPVTLVQSHLSG-ETQLLLS 1570 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g--------------------Hss~VtsLq~afSp-DG~lLaS 1570 (1922)
..+++|+++|++++++..++.|..|+..++.. ..+.. ....+..| ++.+ +++++++
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi--~~~~~~g~l~v~ 97 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDI--SYNLQNNQLYIV 97 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEE--EEETTTTEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceE--EEcCCCCcEEEE
Confidence 45788999999888999999999999876543 22211 01246788 7887 7888877
Q ss_pred ecCCcEEEeccCCCCCCcceEe---------ccceeEEEcC-CCCEEEEeecC--------------CCCCeEEEEECCC
Q 000177 1571 SSSQDVHLWNASSIAGGPMHSF---------EGCKAARFSN-SGNLFAALPTE--------------TSDRGILLYDIQT 1626 (1922)
Q Consensus 1571 SsDgtVkLWDl~t~~gk~l~tf---------~gh~sVaFSP-DG~~LaSgS~~--------------S~DgtIrIWDlrT 1626 (1922)
...+.|..+|..+ +. +..+ ...+.+++.+ +|+.+++.... ..++.|..||..+
T Consensus 98 d~~~~i~~~d~~~--g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 98 DCYYHLSVVGSEG--GH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp ETTTEEEEECTTC--EE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred ECCCCEEEEeCCC--CE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 6556688888764 22 2222 1236799999 99877764210 1246788999877
Q ss_pred CceeeeeccccccccCCCCcceEEEEcCCCCeE-eecc-----EEEEcCCCc--ceeeeccCCCceEEEEecCCCEEEEE
Q 000177 1627 YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTML-LWNG-----ILWDRRNSV--PVHRFDQFTDHGGGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1627 gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lL-aSgg-----rLWDlrtgk--~I~kf~gh~~~VsVaFSPdG~~LASG 1698 (1922)
++...... .....+-++|+|+|++| ++.. ..||+.... ....+.....+-.+++.++|++.++.
T Consensus 175 ~~~~~~~~--------~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~gP~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 175 KETTLLLK--------ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNADGHFWVSS 246 (322)
T ss_dssp TEEEEEEE--------EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSSEEEEEECTTSCEEEEE
T ss_pred CEEEEecc--------CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCCCCCeEECCCCCEEEEe
Confidence 76433222 01122348999999854 4433 566666421 12222222223488999999866654
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.36 E-value=0.0098 Score=67.92 Aligned_cols=200 Identities=10% Similarity=0.049 Sum_probs=119.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
..+.++.+.++|. |..|+.+ |..||. +++.+..+..+....... ... ++.+.+.+.++.|..||.. ++.+
T Consensus 60 ~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~--~~~-~~~l~v~t~~~~l~~~d~~---g~~~ 129 (330)
T 3hxj_A 60 IIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDF--TIF-EDILYVTSMDGHLYAINTD---GTEK 129 (330)
T ss_dssp EEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCE--EEE-TTEEEEECTTSEEEEECTT---SCEE
T ss_pred CcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCc--eEE-CCEEEEEecCCEEEEEcCC---CCEE
Confidence 4456777777765 5555555 888886 666655554333333333 223 6666666678899999976 3344
Q ss_pred eEecc----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1590 HSFEG----CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1590 ~tf~g----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
..+.. ..++.+.+++..++ + +.++.|..||.. ++....+.. .......+.+.++|.+++..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~l~v-g---t~~~~l~~~d~~-g~~~~~~~~-------~~~~~~~~~~d~~g~l~v~t~~l 197 (330)
T 3hxj_A 130 WRFKTKKAIYATPIVSEDGTIYV-G---SNDNYLYAINPD-GTEKWRFKT-------NDAITSAASIGKDGTIYFGSDKV 197 (330)
T ss_dssp EEEECSSCCCSCCEECTTSCEEE-E---CTTSEEEEECTT-SCEEEEEEC-------SSCCCSCCEECTTCCEEEESSSE
T ss_pred EEEcCCCceeeeeEEcCCCEEEE-E---cCCCEEEEECCC-CCEeEEEec-------CCCceeeeEEcCCCEEEEEeCEE
Confidence 44332 24566666777555 4 567889999998 777665541 112233366777887766445
Q ss_pred EEEEcCCCcceeeeccCCCce-EEEEecCCCEEEEEe--E--EEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1664 ILWDRRNSVPVHRFDQFTDHG-GGGFHPAGNEVIINS--E--VWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1664 rLWDlrtgk~I~kf~gh~~~V-sVaFSPdG~~LASGS--e--IWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
..|| .+++.+.++......+ ++.+.++|...+... . .+|. +++.+..+..... ..+.+.++|.+.++.
T Consensus 198 ~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t 272 (330)
T 3hxj_A 198 YAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGS 272 (330)
T ss_dssp EEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEEC
T ss_pred EEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEec
Confidence 7788 6777777666554445 788888887666543 3 4453 4566655553322 456666666555443
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.35 E-value=0.0065 Score=70.67 Aligned_cols=170 Identities=12% Similarity=0.127 Sum_probs=113.4
Q ss_pred eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc------EEEEcC
Q 000177 1596 KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG------ILWDRR 1669 (1922)
Q Consensus 1596 ~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg------rLWDlr 1669 (1922)
..+.|+|++..+++. ....++.|+++|+.+++.+.++.-+ ......-+++. +..|.... .++|..
T Consensus 24 ~Gl~~~~dg~Lyvst-g~~~~s~v~~iD~~tg~v~~~i~l~------~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~ 94 (266)
T 2iwa_A 24 QGLVYAENDTLFEST-GLYGRSSVRQVALQTGKVENIHKMD------DSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR 94 (266)
T ss_dssp EEEEECSTTEEEEEE-CSTTTCEEEEEETTTCCEEEEEECC------TTCCEEEEEEE--TTEEEEEETTCSEEEEEETT
T ss_pred ccEEEeCCCeEEEEC-CCCCCCEEEEEECCCCCEEEEEecC------CCcceEEEEEe--CCEEEEEEecCCEEEEEECC
Confidence 578999987655554 1123689999999999999887511 11111224554 44443222 899999
Q ss_pred CCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCC-------ceeEEEccCCCEEEEEEccC
Q 000177 1670 NSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLD-------QTTITFNARGDVIYAILRRN 1737 (1922)
Q Consensus 1670 tgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~-------~~sVaFSPdG~~LaSgs~~d 1737 (1922)
+.+.+.++... ......++++|+.++.+. .++|..+++.+.+++-.. .+.+.|. +| .+++...
T Consensus 95 t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~-- 169 (266)
T 2iwa_A 95 TLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIW-- 169 (266)
T ss_dssp TTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET--
T ss_pred CCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecC--
Confidence 99999988644 222334566777665544 388999999998887321 2577888 66 5665421
Q ss_pred chhhhhhhcccccccCCcceEEEEecCCCceeeeeccC--------------CceEEEEEcCCCceEEEEec
Q 000177 1738 LEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVD--------------RCVLDFATERTDSFVGLITM 1795 (1922)
Q Consensus 1738 ~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidvk--------------r~I~dLa~SPdds~LAVVe~ 1795 (1922)
....+.++|..+.+.+.++++. ...+.++++|++..+-|...
T Consensus 170 ----------------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 170 ----------------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp ----------------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred ----------------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 2346788898888888888763 24589999999988877753
No 245
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.32 E-value=0.064 Score=62.04 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=121.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--CC-cEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--SQ-DVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--Dg-tVkLWDl~t~~g 1586 (1922)
.....++|+++|+++++-..++.|..||... +....+. .......| +++++|+++++.. ++ .|..+|..+ +
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gi--a~~~dG~l~vad~~~~~~~v~~~d~~~--g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGL--AFTSNGDLVATGWNADSIPVVSLVKSD--G 105 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEE--EECTTSCEEEEEECTTSCEEEEEECTT--S
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeE--EEcCCCcEEEEeccCCcceEEEEcCCC--C
Confidence 3577899999999777777889999999864 3333332 23457788 8899999887753 22 466666555 4
Q ss_pred Ccce--Eecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce-eeeecccccc--ccCCCC-cceEEEEcCCCC
Q 000177 1587 GPMH--SFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL-EAKLSDTSVN--LTGRGH-AYSQIHFSPSDT 1657 (1922)
Q Consensus 1587 k~l~--tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~-i~tL~d~s~~--~~~~gh-~~~vVaFSPdG~ 1657 (1922)
+... .+.. ...+++.+++..+++- ...+.|.++|..+++. +.... .... ....+. ..+-+ +|+++
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~~~~~~v~d---~~~g~i~~~d~~~~~~~v~~~~-~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPLSDTQYLTAD---SYRGAIWLIDVVQPSGSIWLEH-PMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEE---TTTTEEEEEETTTTEEEEEEEC-GGGSCSSTTCCSCSEEEE--EEETT
T ss_pred eEEEEEeCCCccccCcccccCCCcEEEEE---CCCCeEEEEeCCCCcEeEEEEC-CccccccccCCCCcCCCc--CcCCC
Confidence 4321 1111 1344444555444443 4578899999876532 11111 0000 000011 11124 88886
Q ss_pred eEe-ecc-----EEEEcCC-Ccc--eeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEE--EEcC--CCce
Q 000177 1658 MLL-WNG-----ILWDRRN-SVP--VHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLR--SVPS--LDQT 1719 (1922)
Q Consensus 1658 lLa-Sgg-----rLWDlrt-gk~--I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~--tl~g--H~~~ 1719 (1922)
+|. +.. ..||+.. ++. ...+......-.+++.++|++.++.. .+||.. ++... .+.. ...+
T Consensus 180 ~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~ 258 (306)
T 2p4o_A 180 FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGST 258 (306)
T ss_dssp EEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred EEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCce
Confidence 554 433 5667653 321 22232222233789999998766653 256654 55532 3332 2238
Q ss_pred eEEEc---cCCCEEEEEEc
Q 000177 1720 TITFN---ARGDVIYAILR 1735 (1922)
Q Consensus 1720 sVaFS---PdG~~LaSgs~ 1735 (1922)
+++|. |++..||.+..
T Consensus 259 ~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEECCSTTTTTEEEEEEC
T ss_pred EEEEecccCCCCEEEEECC
Confidence 99999 89888887743
No 246
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.28 E-value=0.046 Score=64.40 Aligned_cols=218 Identities=9% Similarity=0.002 Sum_probs=125.4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEeccc----
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEGC---- 1595 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~gh---- 1595 (1922)
++..|+.++.++.|..||..+|+.+..+..+....... .. .++.+++.+.++.|..+|..+ ++.+..+...
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p--~~-~~~~v~v~~~~g~l~~~d~~t--G~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRP--VV-SDGLVLIHTSNGQLQALNEAD--GAVKWTVNLDMPSL 176 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCC--EE-ETTEEEEECTTSEEEEEETTT--CCEEEEEECCC---
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCC--EE-ECCEEEEEcCCCeEEEEECCC--CcEEEEEeCCCCce
Confidence 46688889999999999999999877665433222111 11 256666667799999999987 7776665432
Q ss_pred -----eeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccC------CCCcceEEEEcCCCCeEeec--
Q 000177 1596 -----KAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTG------RGHAYSQIHFSPSDTMLLWN-- 1662 (1922)
Q Consensus 1596 -----~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~------~gh~~~vVaFSPdG~lLaSg-- 1662 (1922)
..... .+..++.+ +.++.+..||..+|+.+............ .....+. + .++.+++..
T Consensus 177 ~~~~~~~~~~--~~~~v~~g---~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~-~~~~v~~~~~~ 248 (376)
T 3q7m_A 177 SLRGESAPTT--AFGAAVVG---GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV--V-VNGVVFALAYN 248 (376)
T ss_dssp --CCCCCCEE--ETTEEEEC---CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE--E-ETTEEEEECTT
T ss_pred eecCCCCcEE--ECCEEEEE---cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE--E-ECCEEEEEecC
Confidence 11122 24566666 67899999999999988776511100000 0001111 1 134444432
Q ss_pred c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEE
Q 000177 1663 G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYA 1732 (1922)
Q Consensus 1663 g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaS 1732 (1922)
+ ..+|..+|+.+.++... ....+... +..|..++ ..||..+++.+........ ..... .+..|+.
T Consensus 249 g~l~~~d~~tG~~~w~~~~~-~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v 323 (376)
T 3q7m_A 249 GNLTALDLRSGQIMWKRELG-SVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV 323 (376)
T ss_dssp SCEEEEETTTCCEEEEECCC-CEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE
T ss_pred cEEEEEECCCCcEEeeccCC-CCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE
Confidence 2 78888888887666422 11233332 44444443 3788889988777652211 22222 2345555
Q ss_pred EEccCchhhhhhhcccccccCCcceEEEEecCCCceeeeecc
Q 000177 1733 ILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPV 1774 (1922)
Q Consensus 1733 gs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys~IaTidv 1774 (1922)
+. ....+..+|..+.+.+.....
T Consensus 324 ~~-------------------~~g~l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 324 GD-------------------SEGYLHWINVEDGRFVAQQKV 346 (376)
T ss_dssp EC-------------------TTSEEEEEETTTCCEEEEEEC
T ss_pred Ee-------------------CCCeEEEEECCCCcEEEEEec
Confidence 52 123456667666666655544
No 247
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.20 E-value=0.011 Score=67.40 Aligned_cols=191 Identities=10% Similarity=0.057 Sum_probs=123.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEecc----ce
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFEG----CK 1596 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~g----h~ 1596 (1922)
+..|..|+.++.|..||.. ++....+..+...+.++ ...+++.+++.+.++.|..||.. ++.+..+.. ..
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~--~~~~~g~l~vgt~~~~l~~~d~~---g~~~~~~~~~~~~~~ 180 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP--IVSEDGTIYVGSNDNYLYAINPD---GTEKWRFKTNDAITS 180 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC--EECTTSCEEEECTTSEEEEECTT---SCEEEEEECSSCCCS
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee--EEcCCCEEEEEcCCCEEEEECCC---CCEeEEEecCCCcee
Confidence 5578889999999999988 77776666555666666 66778888887778999999986 344444432 25
Q ss_pred eEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec--c--EEEEcCCCc
Q 000177 1597 AARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN--G--ILWDRRNSV 1672 (1922)
Q Consensus 1597 sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg--g--rLWDlrtgk 1672 (1922)
++.+.+++..+++ + +.|..|| .+++....+.. .......+.+.++|.+.+.. + ..+| .+++
T Consensus 181 ~~~~d~~g~l~v~----t--~~l~~~d-~~g~~~~~~~~-------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~ 245 (330)
T 3hxj_A 181 AASIGKDGTIYFG----S--DKVYAIN-PDGTEKWNFYA-------GYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGT 245 (330)
T ss_dssp CCEECTTCCEEEE----S--SSEEEEC-TTSCEEEEECC-------SSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSC
T ss_pred eeEEcCCCEEEEE----e--CEEEEEC-CCCcEEEEEcc-------CCcceeceEECCCCeEEEEcCCCeEEEEC-CCCC
Confidence 5667677775544 4 6699999 77776665541 11223447778888777753 2 4555 3566
Q ss_pred ceeeeccCCCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcCCCc--eeEEEccCCCEEEEE
Q 000177 1673 PVHRFDQFTDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPSLDQ--TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1673 ~I~kf~gh~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~gH~~--~sVaFSPdG~~LaSg 1733 (1922)
.+..+....... ++.+.++|...+... ..+|. +++.+..+..... .++...++|.+.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt 312 (330)
T 3hxj_A 246 EKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGT 312 (330)
T ss_dssp EEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEEC
T ss_pred EeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEc
Confidence 666665544433 566666776554433 25664 5666665543222 577777888766654
No 248
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.18 E-value=0.02 Score=75.12 Aligned_cols=112 Identities=6% Similarity=0.036 Sum_probs=73.8
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----cEEEEECCCC-Ccee-eeccCCCCeeEEEeeecCCCcEEEE-ecC-----CcE
Q 000177 1511 LLTCITFL-GDSSHIAVGSH-TK----ELKIFDSNSS-SPLE-SCTSHQAPVTLVQSHLSGETQLLLS-SSS-----QDV 1576 (1922)
Q Consensus 1511 ~Vt~LaFS-PDG~lLASGS~-DG----tIkIWDl~tg-k~l~-tL~gHss~VtsLq~afSpDG~lLaS-SsD-----gtV 1576 (1922)
.+...+|| |||++|+.+.. +| +|+++|+.++ +.+. .+.. ....+ .|+|||+.|+. ..| ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~--~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEI--VWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCC--EECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeE--EEecCCCEEEEEEECCCCCCCEE
Confidence 57889999 99998875543 23 5999999998 6322 1211 12345 78999987766 333 257
Q ss_pred EEeccCCCCCCcceEecc-----ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1577 HLWNASSIAGGPMHSFEG-----CKAARFSNSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g-----h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
++|++.+........+.. ...+.|+|||++|+..+.......|.++|+.++
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 888886521111223221 256789999998887654445677899999876
No 249
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.12 E-value=0.081 Score=68.66 Aligned_cols=248 Identities=14% Similarity=0.154 Sum_probs=144.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCC----CCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCCCcce
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQ----APVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHs----s~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~gk~l~ 1590 (1922)
+..|+.++.|+.|..+|..+|+.+-++.... ..+.+- ... .++.+++.+. ++.|..||..+ ++.+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~-P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~t--G~~~W 192 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGA-PRV-VKGKVIIGNGGAEYGVRGFVSAYDADT--GKLAW 192 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSC-CEE-ETTEEEECCBCTTTCCBCEEEEEETTT--CCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCC-CEE-ECCEEEEeCCCCCcCCCCEEEEEECCC--CcEEE
Confidence 5678889999999999999999887764321 111110 001 1555555432 47899999988 77776
Q ss_pred Eeccc-----------------------------------eeEEEcCCCCEEEEeecCCCCC------------------
Q 000177 1591 SFEGC-----------------------------------KAARFSNSGNLFAALPTETSDR------------------ 1617 (1922)
Q Consensus 1591 tf~gh-----------------------------------~sVaFSPDG~~LaSgS~~S~Dg------------------ 1617 (1922)
++... ..+++.|+...++.+ +.++
T Consensus 193 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~---~~~g~~w~~~~~~~~~gd~l~~ 269 (668)
T 1kv9_A 193 RFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVG---TGNGSPWNREVRSPGGGDNLYL 269 (668)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEE---CCCEESSCHHHHSTTCCCCTTT
T ss_pred EecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEe---CCCCCccccCCCCCCCCCceee
Confidence 65310 135788877777777 3333
Q ss_pred -eEEEEECCCCceeeeeccccccccCCCCcce-E-EEEcCCCC---eEeecc-----EEEEcCCCcceeeeccCC-----
Q 000177 1618 -GILLYDIQTYQLEAKLSDTSVNLTGRGHAYS-Q-IHFSPSDT---MLLWNG-----ILWDRRNSVPVHRFDQFT----- 1681 (1922)
Q Consensus 1618 -tIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~-v-VaFSPdG~---lLaSgg-----rLWDlrtgk~I~kf~gh~----- 1681 (1922)
.|..+|..||+.+..+.......-....... + ..+..+|+ .++.++ +++|..+|+.+..+....
T Consensus 270 ~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~ 349 (668)
T 1kv9_A 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (668)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccc
Confidence 4999999999998877511000000000011 1 22333554 344443 778888887763322110
Q ss_pred --------------------------------CceEEEEecCCCEEEEE-------------------------------
Q 000177 1682 --------------------------------DHGGGGFHPAGNEVIIN------------------------------- 1698 (1922)
Q Consensus 1682 --------------------------------~~VsVaFSPdG~~LASG------------------------------- 1698 (1922)
++-.++|+|+...+...
T Consensus 350 ~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 429 (668)
T 1kv9_A 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (668)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccC
Confidence 01136778876655431
Q ss_pred --------e--EEEecCCCeEEEEEcCCCc-eeEEEccCCCEEEEEEccCchhhhhhhcccccccCCcceEEEEecCCCc
Q 000177 1699 --------S--EVWDLRKFRLLRSVPSLDQ-TTITFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYS 1767 (1922)
Q Consensus 1699 --------S--eIWDLrTgklL~tl~gH~~-~sVaFSPdG~~LaSgs~~d~~dv~s~lh~rr~ksp~~ssFrt~Da~dys 1767 (1922)
+ ..||+.|++.+-+++.+.. +...+...|.+++.+. .+..++.+|..+.+
T Consensus 430 ~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~-------------------~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGT-------------------AAGQMHAYSADKGE 490 (668)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC-------------------TTSEEEEEETTTCC
T ss_pred CCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEEC-------------------CcccchhhhhhcCh
Confidence 2 2578888888776664332 3344555667777762 23467888888888
Q ss_pred eeeeeccCCceE--EEEEcCCCc-eEEEEe
Q 000177 1768 DIATIPVDRCVL--DFATERTDS-FVGLIT 1794 (1922)
Q Consensus 1768 ~IaTidvkr~I~--dLa~SPdds-~LAVVe 1794 (1922)
.+..+.....+. -+.+..+|+ ++++..
T Consensus 491 ~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 491 ALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred hheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 887776654332 223344565 555544
No 250
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.06 E-value=0.035 Score=71.35 Aligned_cols=136 Identities=15% Similarity=0.085 Sum_probs=87.8
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhhccCCCcccc--cccceeee
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTF--FGLSSCLF 637 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~vPR~s~a~--tgvS~Cly 637 (1922)
.+...+++..++.+|.... ...+...+++.|..|..+......+++.|+++.|+.+=+..... ..+..+|.
T Consensus 177 ~i~~~g~v~~Lv~lL~~~~-------~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~ 249 (644)
T 2z6h_A 177 IILASGGPQALVNIMRTYT-------YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 249 (644)
T ss_dssp HHHHTTHHHHHHHHHTTCC-------CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHcCC-------hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4567788999888886421 11345667777878878888889999999999999886654211 12222333
Q ss_pred hhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-hcchhHHHHHhhhcccHHHHHHHHh
Q 000177 638 TIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAA-AFVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 638 ylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-sf~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
.|+....- ...+..++..-+.||.+.+...|.+|+.-++. +..-+...+.+=..+|+..|+.+|.
T Consensus 250 nL~~~~~~--------~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~ 315 (644)
T 2z6h_A 250 NLSDAATK--------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 315 (644)
T ss_dssp HHGGGCTT--------CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHhhcchh--------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHH
Confidence 33332211 12334677778888998888888888776643 2222333444445678999988886
No 251
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.05 E-value=0.027 Score=69.33 Aligned_cols=433 Identities=17% Similarity=0.182 Sum_probs=214.4
Q ss_pred HHHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhh
Q 000177 542 KYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLL 620 (1922)
Q Consensus 542 ~~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL 620 (1922)
+..+++|.-|....+.-..+...+++..++.+|.. .+..+...+++.|..|..+ ...-..+++.|+++.|+
T Consensus 78 ~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 149 (529)
T 1jdh_A 78 RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS--------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMV 149 (529)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHH
Confidence 34444444444333444455677888888887753 2334678899999998877 45556778999999999
Q ss_pred ccCCCccccc--ccceeeehhcch-hhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHh--hhhcchhHHHHH
Q 000177 621 AVPRNNQTFF--GLSSCLFTIGSL-QGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFF--AAAFVFRAIIDA 695 (1922)
Q Consensus 621 ~vPR~s~a~t--gvS~Clyylay~-~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF--~~sf~Fr~il~~ 695 (1922)
++=+.+..-. ....||..|++. ++.-+.++.. . .+..-+.+|..+.+..+..++... .++. .+...+.
T Consensus 150 ~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~--~----~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 222 (529)
T 1jdh_A 150 ALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS--G----GPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPA 222 (529)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--T----HHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC--C----CHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHH
Confidence 8776542111 112255555552 3444444433 2 344445566655555444433321 2221 2222333
Q ss_pred hhhcccHHHHHHHHhhhhccccccCCCccccCCccCcCCCCCChhhhchhhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000177 696 FDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPN 775 (1922)
Q Consensus 696 FD~~dGLrkL~N~i~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~e~~~~s~rQ~~~h~c~aLR~Yf~aHL~~~v~~~~~~ 775 (1922)
+=..+++..|+.++. + .+ ..+.+++|.+|+...+. .
T Consensus 223 ~~~~g~~~~L~~ll~------------------------~-~~--------~~~~~~a~~~L~~l~~~-----------~ 258 (529)
T 1jdh_A 223 IVEAGGMQALGLHLT------------------------D-PS--------QRLVQNCLWTLRNLSDA-----------A 258 (529)
T ss_dssp HHHTTHHHHHHTTTT------------------------S-SC--------HHHHHHHHHHHHHHHTT-----------C
T ss_pred HHHCCCHHHHHHHHh------------------------C-CC--------hHHHHHHHHHHHHHhcC-----------C
Confidence 333455555554442 0 01 13556667676653210 0
Q ss_pred CCCCCCCCCCCCcCcccccccCCHHHHHHHHHHhhc-ccccC-------cccccCcchHHHHHHhcCChHHHHhhhcCCC
Q 000177 776 KSNRSAGRNIPNVRAAYKPLDISNEAIDAVFLQLQK-DRKLG-------PALVRTRWPAVDRFLSLNGHITLLELCQAPP 847 (1922)
Q Consensus 776 ~~~~s~~~~~~~~~~~~k~~~~s~e~~~~~~~~l~~-~r~~~-------~~~~~~~W~pvd~f~~l~g~~~lL~l~~~~~ 847 (1922)
.... .....+..++..|.. +.+.- .......-.....+...+++..|++++....
T Consensus 259 -~~~~----------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~ 321 (529)
T 1jdh_A 259 -TKQE----------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321 (529)
T ss_dssp -TTCS----------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred -hhhH----------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence 0000 001222222222210 00000 0000111234567788889999998887422
Q ss_pred chhhHHHHHHHHhccceEEEee-cc---hhhhhhhccccCCccchHHHHhhhhccCCCCCccchhHHHHHhhhcccCCCc
Q 000177 848 VERYLHDLLQYALGVLHIVTLV-PN---SRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPS 923 (1922)
Q Consensus 848 ~~r~~~e~v~~aL~vL~i~tvv-P~---~r~~l~~~~~s~~~~Gi~ilL~~a~~g~~~~D~ev~~~AL~Vl~ncVc~P~~ 923 (1922)
. ..++...|+.+|+-++.. |. .|..+.+ ..|+..|+.... .. .++++++.|+.+|.|+...|..
T Consensus 322 ~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~------~~~i~~L~~lL~-~~--~~~~v~~~a~~~l~nl~~~~~~ 389 (529)
T 1jdh_A 322 D---REDITEPAICALRHLTSRHQEAEMAQNAVRL------HYGLPVVVKLLH-PP--SHWPLIKATVGLIRNLALCPAN 389 (529)
T ss_dssp T---CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHH------TTCHHHHHHTTS-TT--CCHHHHHHHHHHHHHHTTSGGG
T ss_pred C---HHHHHHHHHHHHHHHHcCCchHHHHHHHHHH------cCChhHHHHHhc-cc--cchHHHHHHHHHHHHHhcChhh
Confidence 1 135556666666655332 22 2333322 236777877765 21 2468999999999999876642
Q ss_pred CCCCCCccccCccccccccCCCCCCCcccccccccccccccccCcccccccccccccccccCCCcccccccCCCCCCCCC
Q 000177 924 ISNKPPLLAQGQQSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDRGSSANTQLACSTSQTPVPT 1003 (1922)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1922)
+...... | ...-..+ ...... ..+++...- +- +|....
T Consensus 390 ---~~~~~~~-----------~---------~i~~L~~---ll~~~~--~~v~~~a~~---~l-~n~~~~---------- 427 (529)
T 1jdh_A 390 ---HAPLREQ-----------G---------AIPRLVQ---LLVRAH--QDTQRRTSM---GG-TQQQFV---------- 427 (529)
T ss_dssp ---HHHHHHT-----------T---------HHHHHHH---HHHHHH--HHHC---------------CB----------
T ss_pred ---hHHHHHc-----------C---------CHHHHHH---HHHHHh--HHHHHHHhc---cc-Cchhhh----------
Confidence 1100000 0 0000000 000000 000000000 00 000000
Q ss_pred CCCCcccccccccCCCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHhhccccCCCCchhhHHHHHHHHHHhCccccHH
Q 000177 1004 PTSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDT 1083 (1922)
Q Consensus 1004 ~~~~~~~d~~~~~~~~~~~~g~~~~~e~~~~~~~~~VR~nnGIkvLL~LL~~k~~~Pit~aD~iRaLAcraL~GLaR~~~ 1083 (1922)
.+...+ .+-. +.+..+..-.. ....+..++.+++|..|+.||.-. . .-+|..|+.+|.-|+.++.
T Consensus 428 --~~~~~~-~i~~---~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~----~---~~v~~~a~~~l~~l~~~~~ 492 (529)
T 1jdh_A 428 --EGVRME-EIVE---GCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSP----I---ENIQRVAAGVLCELAQDKE 492 (529)
T ss_dssp --TTBCHH-HHHH---HHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCS----C---HHHHHHHHHHHHHHTTSHH
T ss_pred --ccccHH-HHHH---HHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCC----c---hHHHHHHHHHHHHHhcCHH
Confidence 000000 0000 00000000000 112345688899999999999832 2 3589999999999999999
Q ss_pred HHHHHHhhcchHHHHHHHhccCCCCCCccchhHHHHHHHHHHHHHHHH
Q 000177 1084 IAHILTKLQVGKKLSELIRDSGGQTPATEQGRWQAELSQVAIELIAIV 1131 (1922)
Q Consensus 1084 vrqIlskLpl~~~lq~Lmr~p~lq~~~~e~~~f~~~f~~~A~eLie~v 1131 (1922)
.++.|.+...-..|..|+.++ +. +.+++|...|+++
T Consensus 493 ~~~~i~~~~~~~~L~~l~~~~--------~~----~v~~~a~~aL~~l 528 (529)
T 1jdh_A 493 AAEAIEAEGATAPLTELLHSR--------NE----GVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCS--------SH----HHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHhcCC--------CH----HHHHHHHHHHHhc
Confidence 999998888777888888776 22 2346777777765
No 252
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=96.91 E-value=0.044 Score=70.38 Aligned_cols=153 Identities=16% Similarity=0.122 Sum_probs=83.7
Q ss_pred HHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHhccccchhhhc
Q 000177 543 YCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFVDRGGMQKLLA 621 (1922)
Q Consensus 543 ~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV~~gGlq~LL~ 621 (1922)
..+.+|.-|....+....+...+++..++.+|.. .+..+...|++.|..|..+. .....+++.|+++.|++
T Consensus 76 ~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~ 147 (644)
T 2z6h_A 76 CTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGS--------PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 147 (644)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTC--------SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhC--------CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH
Confidence 3444444444444444456677888888887753 23456788999999998873 55566789999999988
Q ss_pred cCCCcccc-c-ccceeeehhcc-hhhHHHHhhcCChhhHHHHHHHHHHHHhcCC-hHHhhhHhhHhhhhcchhHHHHHhh
Q 000177 622 VPRNNQTF-F-GLSSCLFTIGS-LQGIMERVCALPTDVVHQLVELAIQLLECTQ-DQARKNAALFFAAAFVFRAIIDAFD 697 (1922)
Q Consensus 622 vPR~s~a~-t-gvS~Clyylay-~~~aMERvC~lp~~vl~~lV~yaLwLLecsh-ds~r~~A~mFF~~sf~Fr~il~~FD 697 (1922)
+=+....- . ....||.-|++ +.+.-+.++.. ..|..-+.||..+. +..+.+|+..+...-..+..-+.+=
T Consensus 148 lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~------g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~ 221 (644)
T 2z6h_A 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILAS------GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 221 (644)
T ss_dssp GGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc------CChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 76654211 1 11225666665 44444444433 23444555665543 3444444433222112222233333
Q ss_pred hcccHHHHHHHH
Q 000177 698 AQDGLQKLLGLL 709 (1922)
Q Consensus 698 ~~dGLrkL~N~i 709 (1922)
..+++..|+.++
T Consensus 222 ~~g~l~~L~~ll 233 (644)
T 2z6h_A 222 EAGGMQALGLHL 233 (644)
T ss_dssp HTTHHHHHHTTT
T ss_pred HCCCHHHHHHHH
Confidence 345566555444
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.85 E-value=0.029 Score=65.16 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=107.9
Q ss_pred cccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC
Q 000177 1486 RNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE 1564 (1922)
Q Consensus 1486 g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD 1564 (1922)
+....+.+...+.+.++.+.-.. .+......++++.|+... .++.+.+||..+.+.+.++..-..+ +.+ ++|
T Consensus 63 g~S~v~~vD~~Tgkv~~~~~l~~--~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~gl----t~d 135 (262)
T 3nol_A 63 GRSSIRKVDIESGKTLQQIELGK--RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGL----THN 135 (262)
T ss_dssp TEEEEEEECTTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCE----EEC
T ss_pred CCceEEEEECCCCcEEEEEecCC--ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEE----ecC
Confidence 33455666667777777665422 233333333456665555 5889999999999999988643222 344 346
Q ss_pred CcEEEEec-CCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1565 TQLLLSSS-SQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1565 G~lLaSSs-DgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
++.|+.++ +++|.++|..+ .+.+.++.- .+.+.|. +|+.++.. -.++.|.+.|..+++.+.++.
T Consensus 136 g~~L~~SdGs~~i~~iDp~T--~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~---w~~~~I~vIDp~tG~V~~~Id 209 (262)
T 3nol_A 136 DQYLIMSDGTPVLRFLDPES--LTPVRTITVTAHGEELPELNELEWV-DGEIFANV---WQTNKIVRIDPETGKVTGIID 209 (262)
T ss_dssp SSCEEECCSSSEEEEECTTT--CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEE---TTSSEEEEECTTTCBEEEEEE
T ss_pred CCEEEEECCCCeEEEEcCCC--CeEEEEEEeccCCccccccceeEEE-CCEEEEEE---ccCCeEEEEECCCCcEEEEEE
Confidence 66665543 77899999987 666655432 1346776 67666555 567899999999999999887
Q ss_pred ccccccc-----CCCCcceEEEEcCCCCeEeeccEEE
Q 000177 1635 DTSVNLT-----GRGHAYSQIHFSPSDTMLLWNGILW 1666 (1922)
Q Consensus 1635 d~s~~~~-----~~gh~~~vVaFSPdG~lLaSggrLW 1666 (1922)
...+... ..+..-+-++|+|+++.|+..|+.|
T Consensus 210 ~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 210 LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred CCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 3322211 1122334499999988888777444
No 254
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.82 E-value=0.057 Score=69.55 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=72.6
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEECCCCCcee--ee-ccCCCCeeEEEeeecCCCcEEEEec--CCcE
Q 000177 1514 CITFLG-DSSHIAVGSHTK-----------ELKIFDSNSSSPLE--SC-TSHQAPVTLVQSHLSGETQLLLSSS--SQDV 1576 (1922)
Q Consensus 1514 ~LaFSP-DG~lLASGS~DG-----------tIkIWDl~tgk~l~--tL-~gHss~VtsLq~afSpDG~lLaSSs--DgtV 1576 (1922)
.+++.+ +|++++.|+.+. .+.+||..+++... .+ ..+.....++ ++..++++++.|. +..+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~--~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGI--SMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEE--EECTTSCEEEECSSSTTCE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccc--cCCCCCCEEEeCCCCCCce
Confidence 456677 889999988653 58899998876432 23 2233333445 5677999999864 5689
Q ss_pred EEeccCCCCCCcceEecc---ceeEEEcCCCCEEEEeec-CC--CCCeEEEEECCCCce
Q 000177 1577 HLWNASSIAGGPMHSFEG---CKAARFSNSGNLFAALPT-ET--SDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~-~S--~DgtIrIWDlrTgk~ 1629 (1922)
.+||..+.....+..+.. ..++++.++++.++.|+. ++ .-..+.+||..+.+.
T Consensus 268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 999987621111111111 245667789999998841 11 125689999987654
No 255
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.75 E-value=0.13 Score=59.48 Aligned_cols=103 Identities=9% Similarity=0.178 Sum_probs=71.3
Q ss_pred EecCCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEEe-cCCcEEEe
Q 000177 1503 TCRDDAGALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1503 tLrgH~d~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaSS-sDgtVkLW 1579 (1922)
.+.+-. +.+..++|+|++..| ++...++.|...|.. ++.++++. +-....-.| ++.+++.+++++ .++.+.++
T Consensus 21 ~l~g~~-~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGI--a~~~~g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGIT-NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETI--EYIGDNQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCC-SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEE--EECSTTEEEEEETTTTEEEEE
T ss_pred ECCCcc-cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHe--EEeCCCEEEEEECCCCcEEEE
Confidence 345544 569999999976655 557788999999997 88887763 212456778 677899888876 47788888
Q ss_pred ccCCCCCC--cceEec----------cceeEEEcCCCCEEEEe
Q 000177 1580 NASSIAGG--PMHSFE----------GCKAARFSNSGNLFAAL 1610 (1922)
Q Consensus 1580 Dl~t~~gk--~l~tf~----------gh~sVaFSPDG~~LaSg 1610 (1922)
++... +. .+.... +...++|+|.++.|+++
T Consensus 97 ~v~~~-~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va 138 (255)
T 3qqz_A 97 SLTPN-SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFF 138 (255)
T ss_dssp EECTT-CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEE
T ss_pred EcCCC-CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEE
Confidence 87652 21 111111 12679999998777776
No 256
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.74 E-value=0.12 Score=66.00 Aligned_cols=110 Identities=14% Similarity=0.081 Sum_probs=70.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCCceeeeccCC----CCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCCCcce
Q 000177 1521 SSHIAVGSHTKELKIFDSNSSSPLESCTSHQ----APVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1521 G~lLASGS~DGtIkIWDl~tgk~l~tL~gHs----s~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~gk~l~ 1590 (1922)
+..|+.++.|+.|..+|..+|+.+-++.... ..+.+- ... .++.+++.+. ++.|..+|..+ ++.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~-P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~t--G~~~W 190 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA-PFV-AKDTVLMGCSGAELGVRGAVNAFDLKT--GELKW 190 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC-CEE-ETTEEEEECBCGGGTCCCEEEEEETTT--CCEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccC-CEE-ECCEEEEEecCCccCCCCEEEEEECCC--CcEEE
Confidence 5678889999999999999999876653211 112211 011 1566666543 78999999988 77766
Q ss_pred Eeccc------------------------------------------eeEEEcCCCCEEEEeecCC---------CC---
Q 000177 1591 SFEGC------------------------------------------KAARFSNSGNLFAALPTET---------SD--- 1616 (1922)
Q Consensus 1591 tf~gh------------------------------------------~sVaFSPDG~~LaSgS~~S---------~D--- 1616 (1922)
++... ..+++.+....++.+.... .|
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 55321 1245566555666552110 12
Q ss_pred -CeEEEEECCCCceeeeec
Q 000177 1617 -RGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1617 -gtIrIWDlrTgk~i~tL~ 1634 (1922)
+.|..+|..+|+.+..+.
T Consensus 271 ~~~v~Ald~~tG~~~W~~~ 289 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQ 289 (571)
T ss_dssp TTEEEEEETTTCCEEEEEE
T ss_pred EEEEEEEecCCCcEEEEec
Confidence 369999999999988775
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.71 E-value=0.067 Score=61.49 Aligned_cols=171 Identities=12% Similarity=0.075 Sum_probs=107.3
Q ss_pred CCccccccceeeecCceeeEEecCCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCCceeeeccCCCCeeEEEeee
Q 000177 1483 GVHRNRRDRQFVYSRFRPWRTCRDDAGALLTCITFLGDSSHIAV-GSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHL 1561 (1922)
Q Consensus 1483 g~~g~r~dr~fi~srfrpirtLrgH~d~~Vt~LaFSPDG~lLAS-GS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~af 1561 (1922)
|..+....+.+...+.+.++.+.-.. .+.......+++.|+. .-.++.+.+||..+.+.+.++..-..+ +.+ +
T Consensus 38 G~~g~S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t- 111 (243)
T 3mbr_X 38 GETGRSSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--T- 111 (243)
T ss_dssp CCTTSCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--E-
T ss_pred CCCCCceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--e-
Confidence 34444556677777787777665332 2222222333454544 457889999999999999988643333 455 3
Q ss_pred cCCCcEEEEe-cCCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceee
Q 000177 1562 SGETQLLLSS-SSQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEA 1631 (1922)
Q Consensus 1562 SpDG~lLaSS-sDgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~ 1631 (1922)
++++.|..| .+++|.++|..+ .+.+.++.- .+.+.|. +|+.++.. -.+..|.+.|.++|+.+.
T Consensus 112 -~dg~~L~vSdgs~~l~~iDp~t--~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv---w~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 112 -SDDSHLYMSDGTAVIRKLDPDT--LQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV---WLTSRIARIDPASGKVVA 184 (243)
T ss_dssp -ECSSCEEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE---TTTTEEEEECTTTCBEEE
T ss_pred -eCCCEEEEECCCCeEEEEeCCC--CeEEEEEEEccCCcccccceeeEEe-CCEEEEEE---CCCCeEEEEECCCCCEEE
Confidence 355544443 478899999987 666655532 1345555 66666554 456789999999999999
Q ss_pred eecccccccc------CCCCcceEEEEcCCCCeEeeccEEE
Q 000177 1632 KLSDTSVNLT------GRGHAYSQIHFSPSDTMLLWNGILW 1666 (1922)
Q Consensus 1632 tL~d~s~~~~------~~gh~~~vVaFSPdG~lLaSggrLW 1666 (1922)
.+.-..+... ..+..-+-++|+|+++.|+..|+.|
T Consensus 185 ~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w 225 (243)
T 3mbr_X 185 WIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW 225 (243)
T ss_dssp EEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred EEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence 8862222110 1122334499999888777777433
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.71 E-value=0.025 Score=65.85 Aligned_cols=161 Identities=11% Similarity=0.075 Sum_probs=102.8
Q ss_pred cceeeecCceeeEEecCCCCCCEEE--EEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc
Q 000177 1490 DRQFVYSRFRPWRTCRDDAGALLTC--ITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ 1566 (1922)
Q Consensus 1490 dr~fi~srfrpirtLrgH~d~~Vt~--LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~ 1566 (1922)
.+.+...+.+.++.+ -. ..+.. +++. ++.| +..-.++.+.+||..+.+.+.++..-.. -+.+ ++|++
T Consensus 77 v~~iD~~Tgkv~~~~-l~--~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGL----t~Dg~ 146 (268)
T 3nok_A 77 LRQLSLESAQPVWME-RL--GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGL----CYWNG 146 (268)
T ss_dssp EEECCSSCSSCSEEE-EC--TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCE----EEETT
T ss_pred EEEEECCCCcEEeEE-CC--CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEE----ecCCC
Confidence 455556666666665 21 22333 4544 4444 4445788999999999999998864322 2444 34666
Q ss_pred EEEEec-CCcEEEeccCCCCCCcceEecc---------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1567 LLLSSS-SQDVHLWNASSIAGGPMHSFEG---------CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1567 lLaSSs-DgtVkLWDl~t~~gk~l~tf~g---------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
.|+.++ +++|.++|..+ .+.+.++.- .+.+.|. +|+.++.. -.+..|.+.|..+++.+.++.-.
T Consensus 147 ~L~vSdGs~~l~~iDp~T--~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv---w~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 147 KLVRSDGGTMLTFHEPDG--FALVGAVQVKLRGQPVELINELECA-NGVIYANI---WHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp EEEEECSSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE---TTCSEEEEECTTTCBEEEEEECH
T ss_pred EEEEECCCCEEEEEcCCC--CeEEEEEEeCCCCcccccccccEEe-CCEEEEEE---CCCCeEEEEeCCCCcEEEEEECC
Confidence 666654 88999999987 666665532 1456666 77666554 55789999999999999988622
Q ss_pred ccc------ccCCCCcceEEEEcCCCCeEeeccEEE
Q 000177 1637 SVN------LTGRGHAYSQIHFSPSDTMLLWNGILW 1666 (1922)
Q Consensus 1637 s~~------~~~~gh~~~vVaFSPdG~lLaSggrLW 1666 (1922)
.+. ....+..-+-++|+|+++.|+..|+.|
T Consensus 221 ~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~W 256 (268)
T 3nok_A 221 ALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLW 256 (268)
T ss_dssp HHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTC
T ss_pred CCcccccccccCcCCceEEEEEcCCCCEEEEeCCCC
Confidence 111 101122334499999887777666444
No 259
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.68 E-value=0.28 Score=60.43 Aligned_cols=142 Identities=11% Similarity=0.071 Sum_probs=85.8
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecC----Cc-EEEeccCC
Q 000177 1511 LLTCITFLGD--SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSS----QD-VHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPD--G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsD----gt-VkLWDl~t 1583 (1922)
....++|+|+ +..|+.+...+.|+.+|..++.... +.........| +++++|+++++... .. +..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~gi--avd~dG~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADV--NFTLNGDMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEE--EECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEE--EECCCCCEEEEcCCCCcccceEEEEECCC
Confidence 3568999984 4456665555899999987776543 33344567888 88999997777532 12 33333322
Q ss_pred CCC--CcceEeccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eE
Q 000177 1584 IAG--GPMHSFEGCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-ML 1659 (1922)
Q Consensus 1584 ~~g--k~l~tf~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lL 1659 (1922)
... ..+..+...+.++++| +|..+++- ..++.|+.||..++.....+... ........++|+|+|+ ++
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d---~~~~~V~~~d~~~g~~~~~~~~~-----~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTR---YHHAMISSYDPATGTLTEEEVMM-----DTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECB---TTCSEEEEECTTTCCEEEEEEEC-----SCCSSCEEEEECTTSSEEE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEE---CCCCEEEEEECCCCeEEEEEecc-----CCCCCcccEEEeCCCCEEE
Confidence 100 1122334457899999 66666554 56788999999877663333100 0011122499999998 44
Q ss_pred eecc
Q 000177 1660 LWNG 1663 (1922)
Q Consensus 1660 aSgg 1663 (1922)
++..
T Consensus 289 vad~ 292 (433)
T 4hw6_A 289 IIYN 292 (433)
T ss_dssp EEET
T ss_pred EEeC
Confidence 5444
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.67 E-value=0.28 Score=60.27 Aligned_cols=140 Identities=13% Similarity=0.172 Sum_probs=84.8
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEEec-CC----cEEEeccCC
Q 000177 1511 LLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLSSS-SQ----DVHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaSSs-Dg----tVkLWDl~t 1583 (1922)
....++|+| ++..|+.....+.|+.+|+.++... .+.........| +|+++++ ++++.. .+ .+.+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~i--a~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTI--CWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEE--EECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceE--EEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 456899998 4666766666688999998766543 333344557788 8899999 445532 22 233333321
Q ss_pred CCCC---cceEeccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-e
Q 000177 1584 IAGG---PMHSFEGCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-M 1658 (1922)
Q Consensus 1584 ~~gk---~l~tf~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-l 1658 (1922)
... .+..+...+.++++| ++..+++- ...+.|..||..++.....+. .........++|+|+|+ +
T Consensus 215 -~~~~~~~l~~~~~p~giavdp~~g~lyv~d---~~~~~V~~~~~~~~~~~~~~~------~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 215 -GFKVITELTKGQNCNGAETHPINGELYFNS---WNAGQVFRYDFTTQETTPLFT------IQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp -TSCSEEEEEECSSCCCEEECTTTCCEEEEE---TTTTEEEEEETTTTEEEEEEE------CSSSSCCEEEEECTTSSEE
T ss_pred -ceeeeeeeccCCCceEEEEeCCCCEEEEEE---CCCCEEEEEECCCCcEEEEEE------cCCCCcceeEEEcCCCCEE
Confidence 111 122334458899999 67766664 567889999998765422222 00111223499999999 4
Q ss_pred Eeecc
Q 000177 1659 LLWNG 1663 (1922)
Q Consensus 1659 LaSgg 1663 (1922)
+++..
T Consensus 285 yv~d~ 289 (430)
T 3tc9_A 285 YIVVV 289 (430)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 44433
No 261
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.59 E-value=0.11 Score=68.62 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=83.5
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhhccCCCccccc--ccceeee
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRNNQTFF--GLSSCLF 637 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~vPR~s~a~t--gvS~Cly 637 (1922)
.+...+++..++.+|.... ...+...+++.|..|..+......+++.|+|+.|+.+=+..-..+ ....+|.
T Consensus 313 ~i~~~~~i~~Lv~lL~~~~-------~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~ 385 (780)
T 2z6g_A 313 IILASGGPQALVNIMRTYT-------YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385 (780)
T ss_dssp HHHTTTHHHHHHHHHTTCC-------CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCC-------HHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556777877777775311 112233445556666666677788999999999998766542110 1112222
Q ss_pred hhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-hcchhHHHHHhhhcccHHHHHHHHh
Q 000177 638 TIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAA-AFVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 638 ylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-sf~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
.|+....- ...+..+|..-+.||.+.+...|.+|+.-|+. +..-......+=..+|+..|+.+|.
T Consensus 386 ~L~~~~~~--------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 451 (780)
T 2z6g_A 386 NLSDAATK--------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451 (780)
T ss_dssp HHHTTCTT--------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHhccchh--------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHH
Confidence 22222111 11235677888888999999999999877753 3333444555556789999998886
No 262
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=96.59 E-value=0.081 Score=68.67 Aligned_cols=206 Identities=15% Similarity=0.198 Sum_probs=127.0
Q ss_pred CCEEEEEeC------CCcEEEEECCCCCceeeeccC--C-C----------------------------CeeEEEeeecC
Q 000177 1521 SSHIAVGSH------TKELKIFDSNSSSPLESCTSH--Q-A----------------------------PVTLVQSHLSG 1563 (1922)
Q Consensus 1521 G~lLASGS~------DGtIkIWDl~tgk~l~tL~gH--s-s----------------------------~VtsLq~afSp 1563 (1922)
+..+++++. +|.|..||..+|+.+-++... . . ....+ ++++
T Consensus 162 ~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~--a~d~ 239 (668)
T 1kv9_A 162 KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSM--AYDP 239 (668)
T ss_dssp TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCE--EEET
T ss_pred CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccce--EEcC
Confidence 345555543 589999999999988766321 0 0 01123 5677
Q ss_pred CCcEEEEe-cCC-------------------cEEEeccCCCCCCcceEecc--c--e---------eEEEcCCCC---EE
Q 000177 1564 ETQLLLSS-SSQ-------------------DVHLWNASSIAGGPMHSFEG--C--K---------AARFSNSGN---LF 1607 (1922)
Q Consensus 1564 DG~lLaSS-sDg-------------------tVkLWDl~t~~gk~l~tf~g--h--~---------sVaFSPDG~---~L 1607 (1922)
++.++..+ .++ .|..+|..+ ++.+..++. | + ...+..+|+ .+
T Consensus 240 ~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t--G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v 317 (668)
T 1kv9_A 240 ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVL 317 (668)
T ss_dssp TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC--CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEE
Confidence 66666654 343 388899988 887777653 1 0 111223554 56
Q ss_pred EEeecCCCCCeEEEEECCCCceeeeecccc--cc--------------------------ccCC-CCcceEEEEcCCCCe
Q 000177 1608 AALPTETSDRGILLYDIQTYQLEAKLSDTS--VN--------------------------LTGR-GHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1608 aSgS~~S~DgtIrIWDlrTgk~i~tL~d~s--~~--------------------------~~~~-gh~~~vVaFSPdG~l 1658 (1922)
+.+ +.+|.++++|..+|+.+..+.-.. +. .... ++.-..++|+|+..+
T Consensus 318 ~~~---~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~ 394 (668)
T 1kv9_A 318 MQA---PKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (668)
T ss_dssp EEC---CTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred EEE---CCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCE
Confidence 676 789999999999999874432100 00 0000 011112667776554
Q ss_pred Eee---------------------------------------cc--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEE
Q 000177 1659 LLW---------------------------------------NG--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1659 LaS---------------------------------------gg--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LAS 1697 (1922)
+.. .+ ..||+.+|+.+.++..........+...|..|++
T Consensus 395 ~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~ 474 (668)
T 1kv9_A 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ 474 (668)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE
T ss_pred EEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE
Confidence 431 02 6799999998887765544334455566777777
Q ss_pred Ee-----EEEecCCCeEEEEEcCCCc---eeEEEccCCCEEEEE
Q 000177 1698 NS-----EVWDLRKFRLLRSVPSLDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1698 GS-----eIWDLrTgklL~tl~gH~~---~sVaFSPdG~~LaSg 1733 (1922)
++ .+||.++++.+..+..... .-+.+..+|+..++.
T Consensus 475 g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~ 518 (668)
T 1kv9_A 475 GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAI 518 (668)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEE
Confidence 77 4899999999988874432 567777788754443
No 263
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.58 E-value=0.41 Score=62.76 Aligned_cols=209 Identities=11% Similarity=0.108 Sum_probs=134.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec----cCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT----SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~----gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~ 1585 (1922)
..|+++...++|++|..|+.++-|.+||..+++...... .+...|.++ ...++|.+.+++. +-+.+||..+
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i--~~d~~g~lwigt~-~Gl~~~~~~~-- 480 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI--LPDGEGNLWLGTL-SALVRFNPEQ-- 480 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE--EECSSSCEEEEES-SCEEEEETTT--
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE--EECCCCCEEEEec-CceeEEeCCC--
Confidence 569999999999867888888889999988776433221 235678999 7788898888766 5588888765
Q ss_pred CCcceEe-----------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcC
Q 000177 1586 GGPMHSF-----------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSP 1654 (1922)
Q Consensus 1586 gk~l~tf-----------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSP 1654 (1922)
++. ..+ ..+.++...++|+..+.+ . +-+..||..+++. .+.............+..+...+
T Consensus 481 ~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~ 552 (795)
T 4a2l_A 481 RSF-TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG---E--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEAS 552 (795)
T ss_dssp TEE-EECCBCTTCCBCCCCCEEEEEECTTCCEEEEE---S--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECT
T ss_pred CeE-EEccccccccccCCceEEEEEECCCCCEEEEe---C--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECC
Confidence 322 111 124677788888877765 2 3488999887765 33200000001123344577888
Q ss_pred CCCeEeec-c--EEEEcCCCcceeeec---cC-CCce-EEEEecCCCEEEEEe---EEEecCCCeEEEEEc---CCCc--
Q 000177 1655 SDTMLLWN-G--ILWDRRNSVPVHRFD---QF-TDHG-GGGFHPAGNEVIINS---EVWDLRKFRLLRSVP---SLDQ-- 1718 (1922)
Q Consensus 1655 dG~lLaSg-g--rLWDlrtgk~I~kf~---gh-~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL~tl~---gH~~-- 1718 (1922)
+|.+.+.. + ..||..+++. ..|. +. ...+ ++...++|...+++. -.||..+++. ..+. +...
T Consensus 553 ~g~lWigT~~Gl~~~d~~~~~~-~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~~Gl~~~~~~~~~~-~~~~~~dGl~~~~ 630 (795)
T 4a2l_A 553 NGIIWVGTREGFYCFNEKDKQI-KRYNTTNGLPNNVVYGILEDSFGRLWLSTNRGISCFNPETEKF-RNFTESDGLQSNQ 630 (795)
T ss_dssp TSCEEEEESSCEEEEETTTTEE-EEECGGGTCSCSCEEEEEECTTSCEEEEETTEEEEEETTTTEE-EEECGGGTCSCSC
T ss_pred CCCEEEEeCCCceeECCCCCcE-EEeCCCCCCchhheEEEEECCCCCEEEEcCCceEEEcCCCCcE-EEcCCcCCCcccc
Confidence 99876643 2 7888776643 3332 22 2345 788888898766665 3678776653 3443 2221
Q ss_pred ---eeEEEccCCCEEEEE
Q 000177 1719 ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1719 ---~sVaFSPdG~~LaSg 1733 (1922)
.++...++|.+.+++
T Consensus 631 f~~~~~~~~~~G~l~~g~ 648 (795)
T 4a2l_A 631 FNTASYCRTSVGQMYFGG 648 (795)
T ss_dssp EEEEEEEECTTSCEEEEE
T ss_pred CccCceeECCCCeEEEec
Confidence 366778899888876
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.51 E-value=0.15 Score=58.96 Aligned_cols=175 Identities=10% Similarity=0.077 Sum_probs=100.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEEEEe-cCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTK--ELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLLLSS-SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DG--tIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lLaSS-sDgtVkLWDl~t~~ 1585 (1922)
..+..++|+++|+++++..... .|..++..+++...... ........+ +..+++.++++. ..+.|..+|.....
T Consensus 72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~--~~~~~~~~~v~d~~~g~i~~~d~~~~~ 149 (306)
T 2p4o_A 72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGI--TPLSDTQYLTADSYRGAIWLIDVVQPS 149 (306)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEE--EESSSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcc--cccCCCcEEEEECCCCeEEEEeCCCCc
Confidence 4578999999999666554432 46677777776543222 122233445 334556666664 47888888875310
Q ss_pred CCcc------------eEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCC-Cce--eeeeccccccccCCCCcceEE
Q 000177 1586 GGPM------------HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQT-YQL--EAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1586 gk~l------------~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT-gk~--i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
++.. ..+...+.+ +|++++|+.+ +...+.|..||+.. ++. ...+. . .....-+
T Consensus 150 ~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~--d~~~~~I~~~~~~~~g~~~~~~~~~-----~---~~~P~gi 217 (306)
T 2p4o_A 150 GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVS--NTEKMLLLRIPVDSTDKPGEPEIFV-----E---QTNIDDF 217 (306)
T ss_dssp EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEE--ETTTTEEEEEEBCTTSCBCCCEEEE-----E---SCCCSSE
T ss_pred EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEE--eCCCCEEEEEEeCCCCCCCccEEEe-----c---cCCCCCe
Confidence 0110 111122445 7888777665 25678999999875 321 11111 0 0111228
Q ss_pred EEcCCCCeEeecc-----EEEEcCCCcc--eeeeccC-CCceEEEEe---cCCCEEEEEe
Q 000177 1651 HFSPSDTMLLWNG-----ILWDRRNSVP--VHRFDQF-TDHGGGGFH---PAGNEVIINS 1699 (1922)
Q Consensus 1651 aFSPdG~lLaSgg-----rLWDlrtgk~--I~kf~gh-~~~VsVaFS---PdG~~LASGS 1699 (1922)
+++++|+++++.. .+||.. ++. +..+... ....+++|. |++..|++.+
T Consensus 218 ~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 218 AFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp EEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred EECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 9999999888653 667754 554 2233333 334489998 8988776654
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.50 E-value=0.54 Score=60.52 Aligned_cols=108 Identities=9% Similarity=0.069 Sum_probs=69.1
Q ss_pred EEEEEeCCCcEEEEECCCCCceeeeccCC----CCeeEEEeeecCCCcEEEEec------CCcEEEeccCCCCCCcceEe
Q 000177 1523 HIAVGSHTKELKIFDSNSSSPLESCTSHQ----APVTLVQSHLSGETQLLLSSS------SQDVHLWNASSIAGGPMHSF 1592 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~tgk~l~tL~gHs----s~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t~~gk~l~tf 1592 (1922)
+|+.++.|+.|.-+|..+|+.+-...... ..+++- ... .++.+++.+. ++.|.-+|..+ ++.+.++
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ss-P~v-~~g~V~vg~~g~e~g~~g~v~A~D~~T--G~~~W~~ 198 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIA-PYV-VKDKVIIGSSGAELGVRGYLTAYDVKT--GEQVWRA 198 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC-CEE-ETTEEEECCBCGGGTCCCEEEEEETTT--CCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecC-CEE-ECCEEEEEecccccCCCCeEEEEECCC--CcEEEEE
Confidence 38889999999999999999876653221 112211 011 1565555542 78999999988 7776655
Q ss_pred ccc------------------------------------------eeEEEcCCCCEEEEeecCC-------------CCC
Q 000177 1593 EGC------------------------------------------KAARFSNSGNLFAALPTET-------------SDR 1617 (1922)
Q Consensus 1593 ~gh------------------------------------------~sVaFSPDG~~LaSgS~~S-------------~Dg 1617 (1922)
... ..+++.+...+++.+.... ...
T Consensus 199 ~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~ 278 (599)
T 1w6s_A 199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM 278 (599)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred cCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccc
Confidence 421 0234556666666662111 024
Q ss_pred eEEEEECCCCceeeeec
Q 000177 1618 GILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1618 tIrIWDlrTgk~i~tL~ 1634 (1922)
.|..+|..||+.+..+.
T Consensus 279 sv~Ald~~TG~~~W~~q 295 (599)
T 1w6s_A 279 TIFGRDADTGEAKFGYQ 295 (599)
T ss_dssp EEEEEETTTCCEEEEEE
T ss_pred eEEEEeCCCCceeeEee
Confidence 79999999999988775
No 266
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.38 E-value=0.18 Score=66.65 Aligned_cols=155 Identities=14% Similarity=0.072 Sum_probs=86.3
Q ss_pred HHHHHhhhchhHHHHHhhhhh-ccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhhc
Q 000177 543 YCIQCLETLGEYVEVLGPVLH-EKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLA 621 (1922)
Q Consensus 543 ~~l~~L~~lGEYqE~L~~~~~-~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~ 621 (1922)
..+.+|.-|.+..+.-..+.. .+.+..++.+|... .+...-..|.+.|..|..+......+++.|+|+.|++
T Consensus 169 ~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-------~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~ 241 (780)
T 2z6g_A 169 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-------NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVN 241 (780)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-------CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHH
Confidence 344444444443333323343 35666666666431 1223455778888888888888888999999999988
Q ss_pred cCCCcccc--cccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHh-hhhcchhHHHHHhh
Q 000177 622 VPRNNQTF--FGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFF-AAAFVFRAIIDAFD 697 (1922)
Q Consensus 622 vPR~s~a~--tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF-~~sf~Fr~il~~FD 697 (1922)
+=+..... .....||+.|++.. ...+.+.. ...|..-+.||..++..-+..|+..+ .+++........|-
T Consensus 242 lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~------~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL------AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH------TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH------cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 76554211 12333455555442 22211111 13455566677766666565554333 23333455555666
Q ss_pred hcccHHHHHHHHh
Q 000177 698 AQDGLQKLLGLLN 710 (1922)
Q Consensus 698 ~~dGLrkL~N~i~ 710 (1922)
..+|+..|+.+|.
T Consensus 316 ~~~~i~~Lv~lL~ 328 (780)
T 2z6g_A 316 ASGGPQALVNIMR 328 (780)
T ss_dssp TTTHHHHHHHHHT
T ss_pred HcCCHHHHHHHHh
Confidence 6677777777665
No 267
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.26 E-value=0.15 Score=65.18 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=92.9
Q ss_pred CcEEEeccCCCCCCcceEecc--c--------ee-EEEc---CCCC---EEEEeecCCCCCeEEEEECCCCceeeeeccc
Q 000177 1574 QDVHLWNASSIAGGPMHSFEG--C--------KA-ARFS---NSGN---LFAALPTETSDRGILLYDIQTYQLEAKLSDT 1636 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~g--h--------~s-VaFS---PDG~---~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~ 1636 (1922)
+.|.-+|..+ ++.+..++. | .. +.+. .+|+ .++.+ +.+|.++++|..+|+.+..+.-.
T Consensus 291 ~~v~AlD~~T--G~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~---~~~G~l~~lD~~tG~~lw~~~~~ 365 (582)
T 1flg_A 291 SGQVGVDPSS--GEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHA---DRNGFFYVVDRSNGKLQNAFPFV 365 (582)
T ss_dssp SEEEEECTTT--CCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEE---CTTSEEEEEETTTCCEEEEEESS
T ss_pred ceEEEEeCCC--CCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEE---CCCceEEEEECCCCCEecccccc
Confidence 5788999988 787777642 1 11 2222 4564 56666 78999999999999988765411
Q ss_pred c-cc------------------------------------ccCCCCc-ceEEEEcCCCCeEeec----------------
Q 000177 1637 S-VN------------------------------------LTGRGHA-YSQIHFSPSDTMLLWN---------------- 1662 (1922)
Q Consensus 1637 s-~~------------------------------------~~~~gh~-~~vVaFSPdG~lLaSg---------------- 1662 (1922)
. .+ ....+.. -..++++|+..+++..
T Consensus 366 ~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~ 445 (582)
T 1flg_A 366 DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYT 445 (582)
T ss_dssp SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCC
T ss_pred cCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeeccccccc
Confidence 0 00 0000000 0125667765544321
Q ss_pred --------------------c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcC
Q 000177 1663 --------------------G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPS 1715 (1922)
Q Consensus 1663 --------------------g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~g 1715 (1922)
+ ..||+.+|+.+.++..............|..|++++ +.||.++|+.+-++..
T Consensus 446 ~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 446 KGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 2 668888888877765443222212222355566665 4899999999988874
Q ss_pred CCc---eeEEEccCCCEEEEE
Q 000177 1716 LDQ---TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1716 H~~---~sVaFSPdG~~LaSg 1733 (1922)
... .-+.|..+|+..++.
T Consensus 526 ~~g~~a~P~~y~~~G~qYv~~ 546 (582)
T 1flg_A 526 GSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp SSCCCSCCEEEEETTEEEEEE
T ss_pred CCCcccCceEEEECCEEEEEE
Confidence 332 568888888755544
No 268
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.26 E-value=0.13 Score=63.82 Aligned_cols=155 Identities=14% Similarity=0.067 Sum_probs=92.7
Q ss_pred HHHHHHhhhchhH-HHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhh
Q 000177 542 KYCIQCLETLGEY-VEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKL 619 (1922)
Q Consensus 542 ~~~l~~L~~lGEY-qE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~L 619 (1922)
...+.+|+-+... .+.-..++..+++..++.+|.. .+..+...|++.|..|..+ ..+...+++.|+++.|
T Consensus 136 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~L 207 (528)
T 4b8j_A 136 FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS--------SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPL 207 (528)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC--------CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHH
Confidence 3455556555542 4555567788899988888753 2224556778888888765 4566778899999999
Q ss_pred hccCCCccc---ccccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcch-hHHHHH
Q 000177 620 LAVPRNNQT---FFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVF-RAIIDA 695 (1922)
Q Consensus 620 L~vPR~s~a---~tgvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~F-r~il~~ 695 (1922)
+.+=+.+.. -.....||+.|+... ...+..++..++..-+.||..++...+.+|+..++.-... ....+.
T Consensus 208 l~lL~~~~~~~v~~~a~~~L~~L~~~~------~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 281 (528)
T 4b8j_A 208 LAQLNEHTKLSMLRNATWTLSNFCRGK------PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA 281 (528)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHHHCSS------SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCC------CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 988743211 112333444444332 0112233455677777788888888887777666543332 222233
Q ss_pred hhhcccHHHHHHHHh
Q 000177 696 FDAQDGLQKLLGLLN 710 (1922)
Q Consensus 696 FD~~dGLrkL~N~i~ 710 (1922)
+=..+++..|+.+|.
T Consensus 282 ~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 282 VIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHTTCHHHHHHHTT
T ss_pred HHHcCHHHHHHHHHc
Confidence 333467777776653
No 269
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=96.25 E-value=2.9 Score=54.77 Aligned_cols=212 Identities=10% Similarity=0.104 Sum_probs=126.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeecc-------CCCCeeEEEeeecCCCcEEEEecCCcEEEeccC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTS-------HQAPVTLVQSHLSGETQLLLSSSSQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~g-------Hss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~ 1582 (1922)
..|.++...++|. |..|+.++-|.+||..+++....... ....|.++ ...++|.+.++... -|.+||..
T Consensus 215 ~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i--~~d~~g~lWigt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 215 KQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSL--AMDSQNRLWIGTFN-DLNIYHEG 290 (795)
T ss_dssp CCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEE--EECTTSCEEEEESS-CEEEEETT
T ss_pred CeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEE--EEcCCCCEEEEeCC-hhheEcCC
Confidence 5689998888776 44556554588999876654332211 13568999 77888888877655 68889876
Q ss_pred CCCCCcceEe------------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEE
Q 000177 1583 SIAGGPMHSF------------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQI 1650 (1922)
Q Consensus 1583 t~~gk~l~tf------------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vV 1650 (1922)
+ +. ...+ ..++++...++|...+. +.++-|..||..++.... +.............+..+
T Consensus 291 ~--~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWig----t~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i 362 (795)
T 4a2l_A 291 T--DS-FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLG----TYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCI 362 (795)
T ss_dssp T--TE-EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEE----ESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEE
T ss_pred C--Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEE----ECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEE
Confidence 5 22 2222 12467788888886655 344568999987655322 221110111122345557
Q ss_pred EEcCCCCeEeec---c-EEEEcCCCcceeeecc--------CCCce-EEEEecCCCEEEEEe-----EEEecCCCeEEEE
Q 000177 1651 HFSPSDTMLLWN---G-ILWDRRNSVPVHRFDQ--------FTDHG-GGGFHPAGNEVIINS-----EVWDLRKFRLLRS 1712 (1922)
Q Consensus 1651 aFSPdG~lLaSg---g-rLWDlrtgk~I~kf~g--------h~~~V-sVaFSPdG~~LASGS-----eIWDLrTgklL~t 1712 (1922)
...++|.+.+.. | ..||..+++..+-... ....| ++...++|..|.+|+ .+||..+++...-
T Consensus 363 ~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 363 VEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp EECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred EECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 788888876632 3 7888776654322111 12345 788888888333333 3778877664332
Q ss_pred Ec------CCCceeEEEccCCCEEEEE
Q 000177 1713 VP------SLDQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1713 l~------gH~~~sVaFSPdG~~LaSg 1733 (1922)
.. .....++...++|.+.+++
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 21 1222678888888877665
No 270
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.21 E-value=0.16 Score=64.71 Aligned_cols=154 Identities=12% Similarity=0.099 Sum_probs=92.1
Q ss_pred cEEEeccCCCCCCcceEeccc----------eeE---EEcCCCC---EEEEeecCCCCCeEEEEECCCCceeeeecccc-
Q 000177 1575 DVHLWNASSIAGGPMHSFEGC----------KAA---RFSNSGN---LFAALPTETSDRGILLYDIQTYQLEAKLSDTS- 1637 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf~gh----------~sV---aFSPDG~---~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s- 1637 (1922)
.|..+|..+ ++.+..++.. ... ...++|+ .++.+ +.+|.+.++|..+|+.+..+.-..
T Consensus 273 ~v~Ald~~t--G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~---~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 273 TIWGRDLDT--GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHI---DRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp EEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEE---CTTSEEEEEETTTCCEEEEEESSTT
T ss_pred EEEEEecCC--CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEe---CCCcEEEEEECCCCCEEeeecccCC
Confidence 588888887 7777666421 111 1123564 45666 778999999999999877654110
Q ss_pred cc------------------------------ccCC-CCcceEEEEcCCCCeEeec------------------------
Q 000177 1638 VN------------------------------LTGR-GHAYSQIHFSPSDTMLLWN------------------------ 1662 (1922)
Q Consensus 1638 ~~------------------------------~~~~-gh~~~vVaFSPdG~lLaSg------------------------ 1662 (1922)
.. .... ++.-..++|+|+..+++..
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 00 0000 0111125677776555421
Q ss_pred ----------------c--EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEe-----EEEecCCCeEEEEEcCCCc-
Q 000177 1663 ----------------G--ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLLRSVPSLDQ- 1718 (1922)
Q Consensus 1663 ----------------g--rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL~tl~gH~~- 1718 (1922)
+ ..||+.+++.+.++.......+..+...+..|+.++ ..||.++++.+.++.....
T Consensus 428 ~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~ 507 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp EEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred cceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCc
Confidence 2 678888888877775433222222333455555565 4899999999988873332
Q ss_pred --eeEEEccCCCEEEEE
Q 000177 1719 --TTITFNARGDVIYAI 1733 (1922)
Q Consensus 1719 --~sVaFSPdG~~LaSg 1733 (1922)
..+.+..+|+.+++.
T Consensus 508 ~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 508 IGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp CSCCEEEEETTEEEEEE
T ss_pred EeeeEEEEECCEEEEEE
Confidence 466777888866655
No 271
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.18 E-value=0.11 Score=66.63 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=89.4
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh--hhhHHHHhccccchhhhccCCCc---ccccccce
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH--RKFAALFVDRGGMQKLLAVPRNN---QTFFGLSS 634 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H--kKfA~eFV~~gGlq~LL~vPR~s---~a~tgvS~ 634 (1922)
.|.+.+++-.+..||.. .+..+-+.|.+.|..|..| ...-...++.|||+.|+.+=+.. ..---+..
T Consensus 85 ~V~~~G~Ip~LV~LL~s--------~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~ 156 (584)
T 3l6x_A 85 DVRKLKGIPVLVGLLDH--------PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITG 156 (584)
T ss_dssp HHHHTTHHHHHHHGGGC--------SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHCC--------CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHH
Confidence 46788898887887753 2345678899999999986 67888889999999999887642 11224456
Q ss_pred eeehhcchhhHHHHhhcCChhhHHHHHHHHH-----HHHh---------cCChHHhhhHhhH-hhhhcch---hHHHHHh
Q 000177 635 CLFTIGSLQGIMERVCALPTDVVHQLVELAI-----QLLE---------CTQDQARKNAALF-FAAAFVF---RAIIDAF 696 (1922)
Q Consensus 635 Clyylay~~~aMERvC~lp~~vl~~lV~yaL-----wLLe---------cshds~r~~A~mF-F~~sf~F---r~il~~F 696 (1922)
||+.||.++..-+.|+. .-+..||+..+ |... .+....++||+-. +.+|... |..+..
T Consensus 157 aL~nLS~~~~~k~~I~~---~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~- 232 (584)
T 3l6x_A 157 TLWNLSSHDSIKMEIVD---HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE- 232 (584)
T ss_dssp HHHHHTTSGGGHHHHHH---HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-
T ss_pred HHHHHhCCchhhHHHHh---ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-
Confidence 99999999887777763 34555665432 2111 1234556666643 3445442 333322
Q ss_pred hhcccH-HHHHHHHhh
Q 000177 697 DAQDGL-QKLLGLLND 711 (1922)
Q Consensus 697 D~~dGL-rkL~N~i~~ 711 (1922)
.+|+ ..|+.+|..
T Consensus 233 --~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 233 --CDGLVDALIFIVQA 246 (584)
T ss_dssp --STTHHHHHHHHHHH
T ss_pred --cCCcHHHHHHHHHH
Confidence 3565 488888863
No 272
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.14 E-value=0.023 Score=62.65 Aligned_cols=223 Identities=20% Similarity=0.215 Sum_probs=142.2
Q ss_pred cchhhHHHHHHHHhhhhh-hHHHHhccccchhhhccCCCccc--ccccceeeehhcch-hhHHHHhhcCChhhHHHHHHH
Q 000177 588 MLLPDVMKLICALAAHRK-FAALFVDRGGMQKLLAVPRNNQT--FFGLSSCLFTIGSL-QGIMERVCALPTDVVHQLVEL 663 (1922)
Q Consensus 588 ~l~~eaLk~l~aLl~HkK-fA~eFV~~gGlq~LL~vPR~s~a--~tgvS~Clyylay~-~~aMERvC~lp~~vl~~lV~y 663 (1922)
.+-..|++.|..|..+.. ....|++.|+++.|+++=+.+.. -.....||..|+.. ++..+.+... ..|..
T Consensus 17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~ 90 (252)
T 4hxt_A 17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA------GGVEV 90 (252)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC------CCHHH
Confidence 456789999999987765 88899999999999988765431 11333455555555 4444443322 35777
Q ss_pred HHHHHhcCChHHhhhHhhHhhhhc-chhHHHHHhhhcccHHHHHHHHhhhhccccccCCCccccCCccCcCCCCCChhhh
Q 000177 664 AIQLLECTQDQARKNAALFFAAAF-VFRAIIDAFDAQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVL 742 (1922)
Q Consensus 664 aLwLLecshds~r~~A~mFF~~sf-~Fr~il~~FD~~dGLrkL~N~i~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~e~~ 742 (1922)
-+.+|..+++..|.+|+..++.-. ......+.+-..+++..|+.++.. ++
T Consensus 91 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-------------------------~~---- 141 (252)
T 4hxt_A 91 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-------------------------TD---- 141 (252)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-------------------------SC----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-------------------------CC----
Confidence 888899888888988887776655 566666666677888888877641 00
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCcCcccccccCCHHHHHHHHHHhhcccccCcccccC
Q 000177 743 TSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAGRNIPNVRAAYKPLDISNEAIDAVFLQLQKDRKLGPALVRT 822 (1922)
Q Consensus 743 ~~s~rQ~~~h~c~aLR~Yf~aHL~~~v~~~~~~~~~~s~~~~~~~~~~~~k~~~~s~e~~~~~~~~l~~~r~~~~~~~~~ 822 (1922)
.++...+|.+|..... . +.+..
T Consensus 142 ----~~~~~~a~~~L~~l~~---------------------~-------------~~~~~-------------------- 163 (252)
T 4hxt_A 142 ----SEVQKEAARALANIAS---------------------G-------------PDEAI-------------------- 163 (252)
T ss_dssp ----HHHHHHHHHHHHHHTT---------------------S-------------CHHHH--------------------
T ss_pred ----HHHHHHHHHHHHHHHc---------------------C-------------CHHHH--------------------
Confidence 1355666766654211 0 00100
Q ss_pred cchHHHHHHhcCChHHHHhhhcCCCchhhHHHHHHHHhccceEEEe-ecchhhhhhhccccCCccchHHHHhhhhccCCC
Q 000177 823 RWPAVDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGVLHIVTL-VPNSRKMIVNATLSNNHTGIAVILDAANAVSSY 901 (1922)
Q Consensus 823 ~W~pvd~f~~l~g~~~lL~l~~~~~~~r~~~e~v~~aL~vL~i~tv-vP~~r~~l~~~~~s~~~~Gi~ilL~~a~~g~~~ 901 (1922)
..+...|++..|++++.... .++...|+.+|.-++. .|..+..+.+ ..++..|+.... .
T Consensus 164 -----~~~~~~~~i~~L~~ll~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~l~~------~~~i~~L~~ll~-~--- 223 (252)
T 4hxt_A 164 -----KAIVDAGGVEVLVKLLTSTD-----SEVQKEAARALANIASGPTSAIKAIVD------AGGVEVLQKLLT-S--- 223 (252)
T ss_dssp -----HHHHHTTHHHHHHHHTTCSC-----HHHHHHHHHHHHHHTTSBHHHHHHHHH------TTHHHHHHHGGG-C---
T ss_pred -----HHHHHCcCHHHHHHHHCCCC-----HHHHHHHHHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHC-C---
Confidence 13344467777777777432 2444455555544433 3333333333 347788888886 2
Q ss_pred CCccchhHHHHHhhhcccCCCc
Q 000177 902 VDPEIIQPALNVLINLVCPPPS 923 (1922)
Q Consensus 902 ~D~ev~~~AL~Vl~ncVc~P~~ 923 (1922)
.|+++++.|+.+|.|+...+..
T Consensus 224 ~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 224 TDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp SCHHHHHHHHHHHHHHHHTCBC
T ss_pred CcHHHHHHHHHHHHHHHcCCCc
Confidence 3789999999999999988863
No 273
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.05 E-value=0.68 Score=55.22 Aligned_cols=96 Identities=9% Similarity=0.124 Sum_probs=58.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeec---cCCCCeeEEEeeecCC----CcEEEEec-C-----C
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCT---SHQAPVTLVQSHLSGE----TQLLLSSS-S-----Q 1574 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~---gHss~VtsLq~afSpD----G~lLaSSs-D-----g 1574 (1922)
..-+.++|.|+|++++ +..+|.|++++ +++.. ..+. ........| +++|+ +.+.++.. . .
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gi--a~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGL--ALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEE--EECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeE--EECCCCCCCCEEEEEEecCCCCCcc
Confidence 4578999999998554 46679999998 44321 1111 123467788 88998 55555532 2 5
Q ss_pred cEEEeccCCCC---CCcc-eEec---c--c--eeEEEcCCCCEEEEe
Q 000177 1575 DVHLWNASSIA---GGPM-HSFE---G--C--KAARFSNSGNLFAAL 1610 (1922)
Q Consensus 1575 tVkLWDl~t~~---gk~l-~tf~---g--h--~sVaFSPDG~~LaSg 1610 (1922)
.|..|+..... .+.+ ..+. + | ..++|.|+|..+++.
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 67777765310 0111 1132 1 2 579999999877764
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.03 E-value=0.18 Score=66.23 Aligned_cols=111 Identities=10% Similarity=0.034 Sum_probs=65.8
Q ss_pred EEEEEcCCCCEEEEEeCC-----CcEEEEECCCCCce--eeec-cCCCCeeEEEeeecCCCcEEEE-ec---CCcEEEec
Q 000177 1513 TCITFLGDSSHIAVGSHT-----KELKIFDSNSSSPL--ESCT-SHQAPVTLVQSHLSGETQLLLS-SS---SQDVHLWN 1580 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~D-----GtIkIWDl~tgk~l--~tL~-gHss~VtsLq~afSpDG~lLaS-Ss---DgtVkLWD 1580 (1922)
..++|+|||+.|+....| ..|.+|++.+++.. ..+. .+......+ .|||||++|+. +. ...|.++|
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~--~~SpDg~~l~~~~~~~~~~~l~~~d 301 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFM--YKAADTNTLCIGSQSPETAEVHLLD 301 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEE--EECTTSSEEEEEEECSSCEEEEEEE
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEE--EECCCCCEEEEEecCCCCceEEEEE
Confidence 357899999988877765 36888898876532 3333 223344555 89999998876 32 34688889
Q ss_pred cCCCCCCc-ceEe-ccc----eeEEEcCCCCEEEEeecC--CCCCeEEEEECCC
Q 000177 1581 ASSIAGGP-MHSF-EGC----KAARFSNSGNLFAALPTE--TSDRGILLYDIQT 1626 (1922)
Q Consensus 1581 l~t~~gk~-l~tf-~gh----~sVaFSPDG~~LaSgS~~--S~DgtIrIWDlrT 1626 (1922)
+.+..+.. +..+ ... .++.|+. |+.|+..+.. .....|..+|+.+
T Consensus 302 ~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 302 LRKGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp SSSCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 87621222 0223 222 3344433 5555444322 1345677788765
No 275
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.81 E-value=0.38 Score=55.71 Aligned_cols=136 Identities=9% Similarity=0.037 Sum_probs=84.2
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeec----c-CCCCeeEEEeeecC-CCcEEEEec-----------
Q 000177 1511 LLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCT----S-HQAPVTLVQSHLSG-ETQLLLSSS----------- 1572 (1922)
Q Consensus 1511 ~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~----g-Hss~VtsLq~afSp-DG~lLaSSs----------- 1572 (1922)
.+..+++.+ +| .|+.+...+.|.+||..++.. ..+. + .....+.+ .+.+ +|++.++..
T Consensus 81 ~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i--~~d~~~G~l~v~d~~~~~~~~~~~~ 156 (322)
T 2fp8_A 81 RTYDISYNLQNN-QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAV--TVDQRTGIVYFTDVSTLYDDRGVQQ 156 (322)
T ss_dssp CEEEEEEETTTT-EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEE--EECTTTCCEEEEESCSSCCTTCHHH
T ss_pred CCceEEEcCCCC-cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceE--EEecCCCEEEEECCcccccccccce
Confidence 478899998 55 455555556688888765543 2221 1 12346778 7899 999888742
Q ss_pred -------CCcEEEeccCCCCCCcc---eEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc--eeeeeccccccc
Q 000177 1573 -------SQDVHLWNASSIAGGPM---HSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ--LEAKLSDTSVNL 1640 (1922)
Q Consensus 1573 -------DgtVkLWDl~t~~gk~l---~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk--~i~tL~d~s~~~ 1640 (1922)
++.|..||..+ ++.. ..+...+.++|+|++++|+.+ +...+.|.+||+.... ....+..
T Consensus 157 ~~~~~~~~g~v~~~d~~~--~~~~~~~~~~~~p~gia~~~dg~~lyv~--d~~~~~I~~~~~~~~~~~~~~~~~~----- 227 (322)
T 2fp8_A 157 IMDTSDKTGRLIKYDPST--KETTLLLKELHVPGGAEVSADSSFVLVA--EFLSHQIVKYWLEGPKKGTAEVLVK----- 227 (322)
T ss_dssp HHHHTCCCEEEEEEETTT--TEEEEEEEEESCCCEEEECTTSSEEEEE--EGGGTEEEEEESSSTTTTCEEEEEE-----
T ss_pred ehcccCCCceEEEEeCCC--CEEEEeccCCccCcceEECCCCCEEEEE--eCCCCeEEEEECCCCcCCccceEEe-----
Confidence 25688888764 3322 122334789999999866655 2456889999987532 1112210
Q ss_pred cCCCCcceEEEEcCCCCeEeec
Q 000177 1641 TGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1641 ~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
..+ ..-++++++|+++++.
T Consensus 228 -~~g--P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 228 -IPN--PGNIKRNADGHFWVSS 246 (322)
T ss_dssp -CSS--EEEEEECTTSCEEEEE
T ss_pred -CCC--CCCeEECCCCCEEEEe
Confidence 112 2238899999877754
No 276
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.80 E-value=1.1 Score=53.59 Aligned_cols=217 Identities=16% Similarity=0.116 Sum_probs=113.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC-ceeeec---cCCCCeeEEEeeecCC----CcEEEEec----C----
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSS-PLESCT---SHQAPVTLVQSHLSGE----TQLLLSSS----S---- 1573 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk-~l~tL~---gHss~VtsLq~afSpD----G~lLaSSs----D---- 1573 (1922)
...+.++|.|+|+ |+++..+|.|++++ .+++ .+..+. ........| +++|+ +.+.++.. +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gi--a~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGL--ALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEE--EECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeE--EeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4578999999998 45556669999997 3454 122211 123457888 78887 56656532 3
Q ss_pred CcEEEeccCCCCCC-----cc-eEec---cc--eeEEEcCCCCEEEEeecCC----------CCCeEEEEECCCCceeee
Q 000177 1574 QDVHLWNASSIAGG-----PM-HSFE---GC--KAARFSNSGNLFAALPTET----------SDRGILLYDIQTYQLEAK 1632 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk-----~l-~tf~---gh--~sVaFSPDG~~LaSgS~~S----------~DgtIrIWDlrTgk~i~t 1632 (1922)
..|..|+....... .+ ..+. .| ..+.|.|+|.++++.+..+ ..+.|.-+|... +...
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~- 182 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPA- 182 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCT-
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCC-
Confidence 56777776541001 11 1122 13 5699999998777752211 124555555432 1000
Q ss_pred eccc--cccccCCCCcceE-EEEcC-CCCeEeecc------EEEEcCCCc------------------ceeee-ccCCCc
Q 000177 1633 LSDT--SVNLTGRGHAYSQ-IHFSP-SDTMLLWNG------ILWDRRNSV------------------PVHRF-DQFTDH 1683 (1922)
Q Consensus 1633 L~d~--s~~~~~~gh~~~v-VaFSP-dG~lLaSgg------rLWDlrtgk------------------~I~kf-~gh~~~ 1683 (1922)
..+ .......++..+. ++|+| +|+++++.. .|.-+..+. ++..+ ..+...
T Consensus 183 -~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 183 -DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp -TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred -CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 000 0000012344333 99999 788777554 344333322 33444 233334
Q ss_pred eEEEEe-------cCCCEEEEEe---EEEec--CC-CeEE--EEEc-CC--CceeEEEccCCCEEEEE
Q 000177 1684 GGGGFH-------PAGNEVIINS---EVWDL--RK-FRLL--RSVP-SL--DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1684 VsVaFS-------PdG~~LASGS---eIWDL--rT-gklL--~tl~-gH--~~~sVaFSPdG~~LaSg 1733 (1922)
..+.|. .+|.++++.- +||-+ .. ++.. ..+. +. ....+++.|+|.+.++.
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 477773 5676655543 45543 32 2222 2332 21 22789999999766655
No 277
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.79 E-value=1.5 Score=52.29 Aligned_cols=106 Identities=9% Similarity=0.048 Sum_probs=61.1
Q ss_pred CeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEe-------ccceeEEEcCC---CCEEEEeecCCCC---CeE
Q 000177 1553 PVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSF-------EGCKAARFSNS---GNLFAALPTETSD---RGI 1619 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf-------~gh~sVaFSPD---G~~LaSgS~~S~D---gtI 1619 (1922)
.-+.| +|.|+|+++++..++.|++++ .. ....+..+ .+...++|+|+ +..|+.+.....+ +.|
T Consensus 32 ~P~~i--a~~pdG~l~V~e~~g~I~~i~-~g-~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 32 VPWAL--AFLPDGGMLIAERPGRIRLFR-EG-RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CEEEE--EECTTSCEEEEETTTEEEEEE-TT-EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CceEE--EEcCCCeEEEEeCCCeEEEEE-CC-CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 35677 889999988887789999998 21 11112211 12478999998 5555444111111 568
Q ss_pred EEEECCCCcee--eeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1620 LLYDIQTYQLE--AKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1620 rIWDlrTgk~i--~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
..|+...+... ..+-..........|....++|.|+|.++++.
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 88887644211 11110000001224555669999999988875
No 278
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.76 E-value=0.26 Score=61.21 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=46.0
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCC
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRN 625 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~ 625 (1922)
.+...+++..++.+|... ++..+-+.|++.|+.|..+ ......+++.|++..|+.+=+.
T Consensus 112 ~~~~~g~v~~Lv~lL~~~-------~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~ 171 (528)
T 4b8j_A 112 EVIQSGVVPRFVQFLTRE-------DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS 171 (528)
T ss_dssp HHHHTTCHHHHHHHHTCT-------TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHhCCC-------CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC
Confidence 456788888888888531 1135678899999999987 7788889999999999887654
No 279
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.71 E-value=0.14 Score=62.88 Aligned_cols=156 Identities=14% Similarity=0.076 Sum_probs=93.7
Q ss_pred HHHHHHhhhchhHHHHHhhhhhc-cchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhh
Q 000177 542 KYCIQCLETLGEYVEVLGPVLHE-KGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLL 620 (1922)
Q Consensus 542 ~~~l~~L~~lGEYqE~L~~~~~~-~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL 620 (1922)
...+.+|.-+....+.-..++.. +++..++.+|... .+..+...+++.|..|..+......+++.||++.|+
T Consensus 35 ~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~-------~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~ 107 (529)
T 1jdh_A 35 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-------NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALV 107 (529)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHH
Confidence 34455555555444433344544 6777777777531 122345678888999998888899999999999998
Q ss_pred ccCCCcccc--cccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHh-hhhcchhHHHHHh
Q 000177 621 AVPRNNQTF--FGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFF-AAAFVFRAIIDAF 696 (1922)
Q Consensus 621 ~vPR~s~a~--tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF-~~sf~Fr~il~~F 696 (1922)
++=+.+... .....+|+.|++.. ..-+.++ -...|..-+.+|..++...+..++..+ .+++.....-..|
T Consensus 108 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~------~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i 181 (529)
T 1jdh_A 108 KMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR------LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHH------HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHH------HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 876544211 11222333333331 1111111 124567777888888888777765444 3444444555555
Q ss_pred hhcccHHHHHHHHh
Q 000177 697 DAQDGLQKLLGLLN 710 (1922)
Q Consensus 697 D~~dGLrkL~N~i~ 710 (1922)
=..+|+..|+.+++
T Consensus 182 ~~~~~i~~L~~ll~ 195 (529)
T 1jdh_A 182 LASGGPQALVNIMR 195 (529)
T ss_dssp HHTTHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 56689999998886
No 280
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.70 E-value=0.33 Score=62.50 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=38.8
Q ss_pred CcEEEeccCCCCCCcceEeccce----------e-EEEc---CCC---CEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1574 QDVHLWNASSIAGGPMHSFEGCK----------A-ARFS---NSG---NLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~gh~----------s-VaFS---PDG---~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
..|.-+|..+ ++.+..++... . +.+. .+| +.++.+ +.+|.+.++|..+|+.+....
T Consensus 278 ~sv~Ald~~T--G~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~---~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 278 MTIFGRDADT--GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHP---DRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp SEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEE---CTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCC--CceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEE---CCCcEEEEEECCCCCEeeccc
Confidence 3788889888 77777665420 1 2222 457 456666 788999999999999887654
No 281
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.61 E-value=0.17 Score=64.87 Aligned_cols=172 Identities=10% Similarity=0.068 Sum_probs=105.9
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCCceeeecc--CC--------CCeeEEEe
Q 000177 1514 CITFLGDSSHIAVGSH--------------------T----KELKIFDSNSSSPLESCTS--HQ--------APVTLVQS 1559 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~--------------------D----GtIkIWDl~tgk~l~tL~g--Hs--------s~VtsLq~ 1559 (1922)
..++.|+..+|+.++. | +.|.-+|..+|+.+-.++. |. .++..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~--- 326 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLF--- 326 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEE---
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEE---
Confidence 4677787778877763 2 6899999999998877642 32 12221
Q ss_pred eec-CCCc---EEEE-ecCCcEEEeccCCCCCCcceEeccc---------------------------------------
Q 000177 1560 HLS-GETQ---LLLS-SSSQDVHLWNASSIAGGPMHSFEGC--------------------------------------- 1595 (1922)
Q Consensus 1560 afS-pDG~---lLaS-SsDgtVkLWDl~t~~gk~l~tf~gh--------------------------------------- 1595 (1922)
... .+|+ +++. +.+|.+.++|..+ ++.+..+...
T Consensus 327 ~~~~~~G~~~~~v~~~~~~G~l~~lD~~t--G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~ 404 (582)
T 1flg_A 327 DYKAKDGKIVKATAHADRNGFFYVVDRSN--GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEV 404 (582)
T ss_dssp EEECSSSCEEEEEEEECTTSEEEEEETTT--CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEE
T ss_pred eeecCCCCEEEEEEEECCCceEEEEECCC--CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEE
Confidence 111 4663 5555 4699999999887 6655433210
Q ss_pred ----------eeEEEcCCCCEEEEeec------------------------------CCCCCeEEEEECCCCceeeeecc
Q 000177 1596 ----------KAARFSNSGNLFAALPT------------------------------ETSDRGILLYDIQTYQLEAKLSD 1635 (1922)
Q Consensus 1596 ----------~sVaFSPDG~~LaSgS~------------------------------~S~DgtIrIWDlrTgk~i~tL~d 1635 (1922)
..++|+|+...++.... ...++.|..||+.+|+.+.+...
T Consensus 405 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~ 484 (582)
T 1flg_A 405 SPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKE 484 (582)
T ss_dssp SSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEE
T ss_pred CcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecC
Confidence 13466775544444311 01368899999999998877651
Q ss_pred ccccccCCCCcceEEEEcCCCCeEeecc-----EEEEcCCCcceeeeccCCCce--EEEEecCCC-EEEEE
Q 000177 1636 TSVNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRRNSVPVHRFDQFTDHG--GGGFHPAGN-EVIIN 1698 (1922)
Q Consensus 1636 ~s~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlrtgk~I~kf~gh~~~V--sVaFSPdG~-~LASG 1698 (1922)
. .....-.....+.+++.++ +.||.++|+.+.+|+...... -+.|..+|+ ||++.
T Consensus 485 ~--------~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 485 H--------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp S--------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred C--------CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 1 1111111112344555444 899999999999998765544 477888887 44433
No 282
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.42 E-value=1.4 Score=55.19 Aligned_cols=140 Identities=16% Similarity=0.179 Sum_probs=88.2
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCCcccccccceeeeh
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFT 638 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~s~a~tgvS~Clyy 638 (1922)
.+++.+++..++.||.. .+..+--.|++.|..|..| ......+++.||+..|+.+=......+. ....
T Consensus 157 ~vv~~Gaip~Lv~LL~s--------~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~---~~~~ 225 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLAS--------PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGY 225 (529)
T ss_dssp HHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGS---CHHH
T ss_pred HHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHh---HHHH
Confidence 57788899888887753 2234456788999999876 5777888999999998887654322110 1111
Q ss_pred hcchhhHHHHhhcCC-----hhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-hcchhHHHHHhhhcccHHHHHHHHh
Q 000177 639 IGSLQGIMERVCALP-----TDVVHQLVELAIQLLECTQDQARKNAALFFAA-AFVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 639 lay~~~aMERvC~lp-----~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-sf~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
+.....++-.+|.-. -..+..++..-..||.++++..+.+|+.=++. +-......+.+-..+++.+|+.+|.
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~ 303 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 303 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc
Confidence 122223333444322 23345677777788899999888888765543 2233344455556678888887764
No 283
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.41 E-value=0.94 Score=54.71 Aligned_cols=180 Identities=13% Similarity=0.202 Sum_probs=107.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEe--eecCCCc---EEEEe--c--CCcEEEeccCCCCCCcce
Q 000177 1520 DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQS--HLSGETQ---LLLSS--S--SQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1520 DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~--afSpDG~---lLaSS--s--DgtVkLWDl~t~~gk~l~ 1590 (1922)
...+++...+.+-+.+||+ +|+.+..+.. +.++.|.. .|.-.|+ +++++ . +++|.+|++... ...+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~-~~~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGK-NGTLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTT-TCCEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCC-CCcee
Confidence 4557777778889999999 8999888863 45565521 2222333 33333 3 578999977421 12233
Q ss_pred Ee-----------ccceeEEE--cCC-CC-EEEEeecCCCCCeEEEEECC-------CCceeeeeccccccccCCCCcce
Q 000177 1591 SF-----------EGCKAARF--SNS-GN-LFAALPTETSDRGILLYDIQ-------TYQLEAKLSDTSVNLTGRGHAYS 1648 (1922)
Q Consensus 1591 tf-----------~gh~sVaF--SPD-G~-~LaSgS~~S~DgtIrIWDlr-------Tgk~i~tL~d~s~~~~~~gh~~~ 1648 (1922)
.+ .....+++ +|. ++ +++.. ..++.+..|++. +++.+.+|. .+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~---~k~G~~~q~~l~~~~~g~~~~~lVR~f~--------lgsq~E 183 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT---GKEGEFEQYELKADKNGYISGKKVRAFK--------MNSQTE 183 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE---CSSSEEEEEEEEECTTSCEEEEEEEEEE--------CSSCEE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE---CCCCeEEEEEEEeCCCCcccceEEEEec--------CCCCcc
Confidence 33 22345676 664 54 34444 567999999883 445566665 233344
Q ss_pred EEEEcCCCCeEeecc---EEEEcC-------CCcceeeecc--CCCce-EEEE--ecCCC-EEEEEe------EEEecC-
Q 000177 1649 QIHFSPSDTMLLWNG---ILWDRR-------NSVPVHRFDQ--FTDHG-GGGF--HPAGN-EVIINS------EVWDLR- 1705 (1922)
Q Consensus 1649 vVaFSPdG~lLaSgg---rLWDlr-------tgk~I~kf~g--h~~~V-sVaF--SPdG~-~LASGS------eIWDLr- 1705 (1922)
-+.+.+....|+.+- -||-+. +++.+..+.. ....+ .++. .++|+ ||++.+ .+||..
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~ 263 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG 263 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC
Confidence 477777666665444 577665 2445655532 22234 4544 67777 677666 399996
Q ss_pred CCeEEEEEc
Q 000177 1706 KFRLLRSVP 1714 (1922)
Q Consensus 1706 TgklL~tl~ 1714 (1922)
+.+.+.+|.
T Consensus 264 ~~~~vg~f~ 272 (355)
T 3amr_A 264 KNKYVADFR 272 (355)
T ss_dssp TCCEEEEEE
T ss_pred CCcEEEEEE
Confidence 677777764
No 284
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=95.13 E-value=2.8 Score=50.56 Aligned_cols=141 Identities=7% Similarity=-0.068 Sum_probs=82.6
Q ss_pred CCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
..+..++|++.+..| ++-...+.|..|++..+.....+.........| ++.+. +.++++ ...+.|.++++.. .
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl--avd~~~g~lY~~d~~~~~I~~~~~dg--~ 191 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL--AVDWVHDKLYWTDSGTSRIEVANLDG--A 191 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCE--EEETTTTEEEEEETTTTEEEECBTTS--C
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEE--EEEeCCCeEEEEcCCCCeEEEEeCCC--C
Confidence 457899999755544 555567889999987665433333223344567 66654 455555 3477899888864 2
Q ss_pred CcceEec----cceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-
Q 000177 1587 GPMHSFE----GCKAARFSNSGNLFAALPTETSD-RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL- 1660 (1922)
Q Consensus 1587 k~l~tf~----gh~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa- 1660 (1922)
.....+. ..+.+++.|.+.+|+.+. ... +.|..+++........+. . .-...+-++|+|++..|.
T Consensus 192 ~~~~l~~~~l~~P~giavdp~~g~ly~td--~~~~~~I~r~~~dG~~~~~~~~-~------~~~~PnGlavd~~~~~lY~ 262 (386)
T 3v65_B 192 HRKVLLWQSLEKPRAIALHPMEGTIYWTD--WGNTPRIEASSMDGSGRRIIAD-T------HLFWPNGLTIDYAGRRMYW 262 (386)
T ss_dssp SCEEEECSSCSCEEEEEEETTTTEEEEEE--CSSSCEEEEEETTSCSCEEEEC-S------SCSCEEEEEEEGGGTEEEE
T ss_pred ceEEeecCCCCCCcEEEEEcCCCeEEEec--cCCCCEEEEEeCCCCCcEEEEE-C------CCCCeeeEEEeCCCCEEEE
Confidence 2222222 237899999766555542 333 788888887433322221 0 012223499998665544
Q ss_pred ecc
Q 000177 1661 WNG 1663 (1922)
Q Consensus 1661 Sgg 1663 (1922)
+..
T Consensus 263 aD~ 265 (386)
T 3v65_B 263 VDA 265 (386)
T ss_dssp EET
T ss_pred EEC
Confidence 444
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.11 E-value=1.4 Score=55.56 Aligned_cols=109 Identities=10% Similarity=0.202 Sum_probs=67.3
Q ss_pred CEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCCceeeecc---CCCCeeEEEeee-------cCCCc-EEEEecCC---
Q 000177 1511 LLTCITFLG-DSSHIAVGS-HTKELKIFDSNSSSPLESCTS---HQAPVTLVQSHL-------SGETQ-LLLSSSSQ--- 1574 (1922)
Q Consensus 1511 ~Vt~LaFSP-DG~lLASGS-~DGtIkIWDl~tgk~l~tL~g---Hss~VtsLq~af-------SpDG~-lLaSSsDg--- 1574 (1922)
....++|+| ++..|+.+. ..+.|++.|+.++.....+.. .-.....| +| ++++. ++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~i--a~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSI--AFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEE--EECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEE--EEeecccccCCCCCEEEEEeCCCCCc
Confidence 467899998 355455444 446788899877665443332 12346788 88 99998 44444322
Q ss_pred ----cEEEeccCCCCCC--------cceEeccceeEEEcCCC-CEEEEeecCCCCCeEEEEECC
Q 000177 1575 ----DVHLWNASSIAGG--------PMHSFEGCKAARFSNSG-NLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1575 ----tVkLWDl~t~~gk--------~l~tf~gh~sVaFSPDG-~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
.|.+++... .+. .+..+...+.++++|++ .++++- ..++.|..||+.
T Consensus 218 ~~~~~V~~i~r~~-~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd---~~~g~V~r~d~~ 277 (496)
T 3kya_A 218 DESPSVYIIKRNA-DGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS---YEKGQVFRLDLV 277 (496)
T ss_dssp GGEEEEEEEECCT-TSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE---TTTTEEEEECHH
T ss_pred ccCceEEEEecCC-CCceeecccceeeccCCCceEEEEcCCCCeEEEEE---CCCCEEEEEecc
Confidence 255665332 112 22344555889999954 444454 667889999998
No 286
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.11 E-value=6.6 Score=46.84 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=80.8
Q ss_pred CeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCC-cceEe-------ccceeEEEcCC---CCEEEEeecC-CCC----
Q 000177 1553 PVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGG-PMHSF-------EGCKAARFSNS---GNLFAALPTE-TSD---- 1616 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk-~l~tf-------~gh~sVaFSPD---G~~LaSgS~~-S~D---- 1616 (1922)
.-+.| +|.|+|+++++..++.|++++. . ++ .+..+ .+...++|+|+ +..|+.+... ..+
T Consensus 30 ~P~~i--a~~pdG~l~V~e~~g~I~~~d~-~--G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 30 VPWSI--APLGGGRYLVTERPGRLVLISP-S--GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CEEEE--EEEETTEEEEEETTTEEEEECS-S--CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCeEE--EEcCCCeEEEEeCCCEEEEEeC-C--CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 45677 7899999988877899999973 3 33 22221 12377999997 4444443110 012
Q ss_pred CeEEEEECCCC--ce--eeeeccccccccCCCCcceEEEEcCCCCeEeecc----------------EEEEcCC-Cc---
Q 000177 1617 RGILLYDIQTY--QL--EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------------ILWDRRN-SV--- 1672 (1922)
Q Consensus 1617 gtIrIWDlrTg--k~--i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------------rLWDlrt-gk--- 1672 (1922)
..|..|+.... .. ...+-.. . .....|....++|.|+|.++++.+ +||-+.. ++
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~-~-~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDG-I-PGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEE-E-ECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred eEEEEEEECCCCcCcCccEEEEEc-C-CCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 56777776643 11 1111000 0 012345556699999999888743 5666542 22
Q ss_pred -------ceeeeccCCCceEEEEec-CCCEEEEEe
Q 000177 1673 -------PVHRFDQFTDHGGGGFHP-AGNEVIINS 1699 (1922)
Q Consensus 1673 -------~I~kf~gh~~~VsVaFSP-dG~~LASGS 1699 (1922)
.+.. .++.+...++|+| +|..+++-.
T Consensus 183 ~npf~~~~i~a-~G~rnp~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 183 DNPFPNSPIWS-YGHRNPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TSSSTTCCEEE-ECCSCCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCcEEE-EccCCcceEEEeCCCCCEEEEec
Confidence 1221 3555666899999 677655543
No 287
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=95.09 E-value=5.7 Score=47.12 Aligned_cols=140 Identities=7% Similarity=-0.045 Sum_probs=83.2
Q ss_pred CCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHI-AVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
..+..++|++.+..| ++-...+.|..|++..+.....+.........+ ++.+. +.++++ ...+.|.++++..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~gl--avd~~~g~ly~~d~~~~~I~~~~~dG--- 147 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGL--AVDWVHDKLYWTDSGTSRIEVANLDG--- 147 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE--EEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEE--EEecCCCeEEEEcCCCCeEEEEcCCC---
Confidence 457899999765555 455567889999987665444443333445677 66654 455555 3477899999864
Q ss_pred CcceEe-c----cceeEEEcCCCCEEEEeecCCCC-CeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1587 GPMHSF-E----GCKAARFSNSGNLFAALPTETSD-RGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1587 k~l~tf-~----gh~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
.....+ . ..+.++++|.+..|+.+. ... +.|..+++..... ..+-. ......+-++|+|++..|.
T Consensus 148 ~~~~~l~~~~l~~P~~iavdp~~g~ly~td--~~~~~~I~r~~~dG~~~-~~~~~------~~~~~PnGla~d~~~~~lY 218 (349)
T 3v64_C 148 AHRKVLLWQSLEKPRAIALHPMEGTIYWTD--WGNTPRIEASSMDGSGR-RIIAD------THLFWPNGLTIDYAGRRMY 218 (349)
T ss_dssp CSCEEEECTTCSCEEEEEEETTTTEEEEEE--CSSSCEEEEEETTSCSC-EESCC------SSCSCEEEEEEETTTTEEE
T ss_pred CceEEEEeCCCCCcceEEEecCcCeEEEec--cCCCCEEEEEeCCCCCc-EEEEE------CCCCCcceEEEeCCCCEEE
Confidence 222222 1 237899999665555442 334 7888888874332 22210 0112223499998665554
Q ss_pred -ecc
Q 000177 1661 -WNG 1663 (1922)
Q Consensus 1661 -Sgg 1663 (1922)
+..
T Consensus 219 ~aD~ 222 (349)
T 3v64_C 219 WVDA 222 (349)
T ss_dssp EEET
T ss_pred EEEC
Confidence 443
No 288
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=94.91 E-value=7.8 Score=46.62 Aligned_cols=170 Identities=6% Similarity=0.001 Sum_probs=95.3
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEe-cCCcEEEeccCCCCCCcce
Q 000177 1513 TCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSS-SSQDVHLWNASSIAGGPMH 1590 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSS-sDgtVkLWDl~t~~gk~l~ 1590 (1922)
+|.+..+.+ +|+.+. ...|+.+++........+.+. ..+..+ +|++.+ .++.+- ..+.|..|++.. .....
T Consensus 80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~-~~~~gl--~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~~ 152 (386)
T 3v65_B 80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL-ENAIAL--DFHHRRELVFWSDVTLDRILRANLNG--SNVEE 152 (386)
T ss_dssp CEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSC-SCEEEE--EEETTTTEEEEEETTTTEEEEEETTS--CCEEE
T ss_pred eECCccccc-eeEeec-CccceeeccCCCcEEEEecCC-CccEEE--EEecCCCeEEEEeCCCCcEEEEecCC--CCcEE
Confidence 355555533 444433 357888888766554444433 446778 777654 455553 478899999875 32222
Q ss_pred Eec----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC-CcceEEEEcCCCCeEe-ec--
Q 000177 1591 SFE----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG-HAYSQIHFSPSDTMLL-WN-- 1662 (1922)
Q Consensus 1591 tf~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g-h~~~vVaFSPdG~lLa-Sg-- 1662 (1922)
.+. ....+++.+.+..|+.+ +...+.|.++++........+. .+ ....-++++|.+..|. +.
T Consensus 153 ~~~~~~~~p~glavd~~~g~lY~~--d~~~~~I~~~~~dg~~~~~l~~--------~~l~~P~giavdp~~g~ly~td~~ 222 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWVHDKLYWT--DSGTSRIEVANLDGAHRKVLLW--------QSLEKPRAIALHPMEGTIYWTDWG 222 (386)
T ss_dssp EECSSCSCCCCEEEETTTTEEEEE--ETTTTEEEECBTTSCSCEEEEC--------SSCSCEEEEEEETTTTEEEEEECS
T ss_pred EEeCCCCCccEEEEEeCCCeEEEE--cCCCCeEEEEeCCCCceEEeec--------CCCCCCcEEEEEcCCCeEEEeccC
Confidence 221 23678998865555444 2556788888887543322222 11 2223488998766554 33
Q ss_pred --cEEEEcC-CCcceeeec--cCCCceEEEEecCCCEEEEEe
Q 000177 1663 --GILWDRR-NSVPVHRFD--QFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1663 --grLWDlr-tgk~I~kf~--gh~~~VsVaFSPdG~~LASGS 1699 (1922)
++||-+. .|.....+. +...+..++|+|++..|..+.
T Consensus 223 ~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 223 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp SSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred CCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 2555443 233333332 222344899998777666554
No 289
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.76 E-value=1.8 Score=54.05 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=87.4
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCCcccccccceeeeh
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFT 638 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~s~a~tgvS~Clyy 638 (1922)
.+.+.+++..++.+|.. .+..+--.|++.|..|..| ..+...+++.||+..|+.+-+.....+. ....
T Consensus 138 ~vv~~GaIp~Lv~lL~s--------~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~---~~~~ 206 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLAS--------PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL---ACGY 206 (510)
T ss_dssp HHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS---CHHH
T ss_pred HHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh---hHHH
Confidence 57788999988888853 2334556788999999887 5677788999999998887654321110 0001
Q ss_pred hcchhhHHHHhhcCC-----hhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-hcchhHHHHHhhhcccHHHHHHHHh
Q 000177 639 IGSLQGIMERVCALP-----TDVVHQLVELAIQLLECTQDQARKNAALFFAA-AFVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 639 lay~~~aMERvC~lp-----~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-sf~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
+.....++-.+|... -..+..++..-..||.++++..+.+|+.=++. +..-......+-..+++.+|+.+|.
T Consensus 207 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 284 (510)
T 3ul1_B 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284 (510)
T ss_dssp HHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc
Confidence 112223333344321 23345667777778888888888888765543 2233334444555677888887764
No 290
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=94.61 E-value=3.2 Score=47.92 Aligned_cols=179 Identities=12% Similarity=0.191 Sum_probs=106.2
Q ss_pred eeccCCCCeeEEEeeecCCCcEEEE-e-cCCcEEEeccCCCCCCcceEe--cc---ceeEEEcCCCCEEEEeecCCCCCe
Q 000177 1546 SCTSHQAPVTLVQSHLSGETQLLLS-S-SSQDVHLWNASSIAGGPMHSF--EG---CKAARFSNSGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1546 tL~gHss~VtsLq~afSpDG~lLaS-S-sDgtVkLWDl~t~~gk~l~tf--~g---h~sVaFSPDG~~LaSgS~~S~Dgt 1618 (1922)
.+.+-...+..| +|+|++..|.+ . .++.|...|.. ++.++++ .+ ...+++.+++.++++. ..++.
T Consensus 21 ~l~g~~~~lSGl--a~~~~~~~L~aV~d~~~~I~~ld~~---g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~---E~~~~ 92 (255)
T 3qqz_A 21 EIAGITNNISSL--TWSAQSNTLFSTINKPAAIVEMTTN---GDLIRTIPLDFVKDLETIEYIGDNQFVISD---ERDYA 92 (255)
T ss_dssp ECTTCCSCEEEE--EEETTTTEEEEEEETTEEEEEEETT---CCEEEEEECSSCSSEEEEEECSTTEEEEEE---TTTTE
T ss_pred ECCCcccCccee--EEeCCCCEEEEEECCCCeEEEEeCC---CCEEEEEecCCCCChHHeEEeCCCEEEEEE---CCCCc
Confidence 344555679999 88887665555 3 46777777775 5666655 32 3678898888876765 55688
Q ss_pred EEEEECCCCceeeeecccc--ccccCCCCcceEEEEcCCCCeEeecc-----EEEEcC---CCcceeeecc-------CC
Q 000177 1619 ILLYDIQTYQLEAKLSDTS--VNLTGRGHAYSQIHFSPSDTMLLWNG-----ILWDRR---NSVPVHRFDQ-------FT 1681 (1922)
Q Consensus 1619 IrIWDlrTgk~i~tL~d~s--~~~~~~gh~~~vVaFSPdG~lLaSgg-----rLWDlr---tgk~I~kf~g-------h~ 1681 (1922)
+.++++.....+....... ......+.....++|+|.++.|.+.. .+|.+. ..+.+..+.. +.
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 9999887654322111010 10001122234599999997666444 566654 1122222211 11
Q ss_pred Cce-EEEEecCCCEEEEEe----E--EEecCCCeEEEEEcCC----------Cc-eeEEEccCCCEEEEEE
Q 000177 1682 DHG-GGGFHPAGNEVIINS----E--VWDLRKFRLLRSVPSL----------DQ-TTITFNARGDVIYAIL 1734 (1922)
Q Consensus 1682 ~~V-sVaFSPdG~~LASGS----e--IWDLrTgklL~tl~gH----------~~-~sVaFSPdG~~LaSgs 1734 (1922)
... +++|+|....+.+-| . ++|.. ++.+..+.-. .+ ..|+|.++|+ ||.++
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvs 241 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVS 241 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEc
Confidence 123 899999876666656 1 66765 6666655411 12 6999999998 55443
No 291
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.61 E-value=1.8 Score=51.82 Aligned_cols=156 Identities=12% Similarity=0.020 Sum_probs=85.6
Q ss_pred HHHHHHHhhhchhH-HHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHhccccchh
Q 000177 541 EKYCIQCLETLGEY-VEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lGEY-qE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV~~gGlq~ 618 (1922)
+...+.+|+-+... .+....++..+++..++.+|.. .+..+-..|++.|..|..+. .+...+++.|+++.
T Consensus 82 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 153 (450)
T 2jdq_A 82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS--------EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPP 153 (450)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHH
Confidence 44566677666542 3334455677888888887753 23345667888888888764 45666888999999
Q ss_pred hhccCCCc-c--cccccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcch-hHHHH
Q 000177 619 LLAVPRNN-Q--TFFGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVF-RAIID 694 (1922)
Q Consensus 619 LL~vPR~s-~--a~tgvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~F-r~il~ 694 (1922)
|+.+-+.+ . .-.....||..|+...+. .....++..++..-+.+|..+++..|.+|+..++.-... .....
T Consensus 154 L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 228 (450)
T 2jdq_A 154 LLQLFSKQNRLTMTRNAVWALSNLCRGKSP-----PPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQ 228 (450)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHCCSSS-----CCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhCCCCC-----CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHH
Confidence 99876631 1 111122233333322100 001122334555556667776777776666555543322 22233
Q ss_pred HhhhcccHHHHHHHH
Q 000177 695 AFDAQDGLQKLLGLL 709 (1922)
Q Consensus 695 ~FD~~dGLrkL~N~i 709 (1922)
.+-..+++..|+++|
T Consensus 229 ~~~~~~~i~~L~~ll 243 (450)
T 2jdq_A 229 AVIDAGVCRRLVELL 243 (450)
T ss_dssp HHHHTTTHHHHHHHT
T ss_pred HHHHcCcHHHHHHHH
Confidence 333345566666544
No 292
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.45 E-value=3.1 Score=49.56 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce---eee----ccCCCCeeEEEeeecCC----CcEEEEe-c-----
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL---ESC----TSHQAPVTLVQSHLSGE----TQLLLSS-S----- 1572 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l---~tL----~gHss~VtsLq~afSpD----G~lLaSS-s----- 1572 (1922)
...+.++|.|+|++|+++...|.|++++.. ++.. ..+ .........| +++|+ +.+.++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gi--a~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDV--VLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEE--EECTTHHHHCEEEEEEEEECSSS
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeE--EECCCCCCCCEEEEEEeCCCCCC
Confidence 346899999999944555678999999853 3221 111 1123456788 88985 5555552 2
Q ss_pred --CCcEEEeccCCCCCC-----cc-eEec-----cc--eeEEEcCCCCEEEEe
Q 000177 1573 --SQDVHLWNASSIAGG-----PM-HSFE-----GC--KAARFSNSGNLFAAL 1610 (1922)
Q Consensus 1573 --DgtVkLWDl~t~~gk-----~l-~tf~-----gh--~sVaFSPDG~~LaSg 1610 (1922)
...|..|++...... .+ ..+. .| ..+.|.|+|.++++.
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 124555655431111 11 1111 13 569999999776665
No 293
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.43 E-value=18 Score=47.27 Aligned_cols=209 Identities=10% Similarity=0.041 Sum_probs=123.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--------------ccCCCCeeEEEeeecCCCcEEEEecCCc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--------------TSHQAPVTLVQSHLSGETQLLLSSSSQD 1575 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--------------~gHss~VtsLq~afSpDG~lLaSSsDgt 1575 (1922)
..|+++...++|. |..|+..+-|.+||..++...... .-....|.+| ...++|.+-+...++-
T Consensus 258 ~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i--~~D~~g~lWigt~~~G 334 (781)
T 3v9f_A 258 SYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYI--FQDSFNNIWIGTWGGG 334 (781)
T ss_dssp CCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEE--EECSSCCEEEEEBSSC
T ss_pred ceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEE--EEeCCCCEEEEecCCe
Confidence 5699999888776 556777566888998766532211 1234678998 7788888888777778
Q ss_pred EEEeccCCCCCCcceEe--------------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeecccccccc
Q 000177 1576 VHLWNASSIAGGPMHSF--------------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLT 1641 (1922)
Q Consensus 1576 VkLWDl~t~~gk~l~tf--------------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~ 1641 (1922)
|..|+... .. ...+ ..+.++...++|...+. +.++-|..||..++.... +..+. .
T Consensus 335 l~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWig----t~~~Gl~~~~~~~~~~~~-~~~~~---~ 403 (781)
T 3v9f_A 335 INFISNAP--PT-FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIG----TDGGGINVFENGKRVAIY-NKENR---E 403 (781)
T ss_dssp EEEECSSC--CS-CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEE----EBSSCEEEEETTEEEEEC-C--------
T ss_pred EEEeCCCC--Cc-ceeeccCccccccCCCCCcceEEEEEcCCCCEEEE----eCCCcEEEEECCCCeEEE-ccCCC---C
Confidence 88888765 22 2222 11466777777776554 333458899987654322 21100 1
Q ss_pred CCCCcceEEEEcCCCCeEeec---c-EEEEcCCCcceeeecc---CCCce-EEEEecCCCEEEEEe---EEEecCCCeEE
Q 000177 1642 GRGHAYSQIHFSPSDTMLLWN---G-ILWDRRNSVPVHRFDQ---FTDHG-GGGFHPAGNEVIINS---EVWDLRKFRLL 1710 (1922)
Q Consensus 1642 ~~gh~~~vVaFSPdG~lLaSg---g-rLWDlrtgk~I~kf~g---h~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL 1710 (1922)
.....+..+...++|.+.+.. | ..||..+++. ..+.. ....+ ++...++|...+... -+||..+++..
T Consensus 404 ~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~ 482 (781)
T 3v9f_A 404 LLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVI 482 (781)
T ss_dssp CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCC
T ss_pred CCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEE
Confidence 112344457777788877632 2 6777766643 23321 23345 777777777544432 36777765543
Q ss_pred EEEcCC-------CceeEEEccCCCEEEEE
Q 000177 1711 RSVPSL-------DQTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1711 ~tl~gH-------~~~sVaFSPdG~~LaSg 1733 (1922)
...... ...++...++|.+.++.
T Consensus 483 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt 512 (781)
T 3v9f_A 483 HHYDTSNSQLLENFVRSIAQDSEGRFWIGT 512 (781)
T ss_dssp EEECTTTSSCSCSCEEEEEECTTCCEEEEE
T ss_pred ecccCcccccccceeEEEEEcCCCCEEEEE
Confidence 322211 12678888888877765
No 294
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.33 E-value=0.73 Score=59.34 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=44.8
Q ss_pred EEEEEEcCCCCEEEEEeC-CCcEEEEECCCCCceeeeccCCCCe-eEEEeeecCCCcEEEEec--C-----CcEEEeccC
Q 000177 1512 LTCITFLGDSSHIAVGSH-TKELKIFDSNSSSPLESCTSHQAPV-TLVQSHLSGETQLLLSSS--S-----QDVHLWNAS 1582 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~-DGtIkIWDl~tgk~l~tL~gHss~V-tsLq~afSpDG~lLaSSs--D-----gtVkLWDl~ 1582 (1922)
..++++..+|++++.|+. +..+.+||..+++....-..+.... .++ ...+++++++.|. + ..+.+||..
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~--~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSS--ATMSDGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEE--EECTTSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccce--EEecCCeEEEEeCcccCCcccccceEeCCC
Confidence 345788899999999984 4689999987765433221111111 122 3456888888753 3 468888886
Q ss_pred C
Q 000177 1583 S 1583 (1922)
Q Consensus 1583 t 1583 (1922)
+
T Consensus 323 t 323 (656)
T 1k3i_A 323 S 323 (656)
T ss_dssp T
T ss_pred C
Confidence 5
No 295
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.28 E-value=6.7 Score=51.27 Aligned_cols=209 Identities=11% Similarity=0.085 Sum_probs=127.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec---------cCCCCeeEEEeeecCCCcEEEEecCCcEEEec
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT---------SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWN 1580 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~---------gHss~VtsLq~afSpDG~lLaSSsDgtVkLWD 1580 (1922)
..|+++...++|. |..|+.++-|..|+..++....... -....|.++ ...++|.+.+...++-|.+||
T Consensus 313 ~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i--~~d~~g~lWigt~~~Gl~~~~ 389 (781)
T 3v9f_A 313 ASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSV--CDDGQGKLWIGTDGGGINVFE 389 (781)
T ss_dssp SCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEE--EECTTSCEEEEEBSSCEEEEE
T ss_pred CeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEE--EEcCCCCEEEEeCCCcEEEEE
Confidence 5699999998886 6678888889999987654332110 123568888 777888888877667788888
Q ss_pred cCCCCCCcce-----Ee--ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEc
Q 000177 1581 ASSIAGGPMH-----SF--EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFS 1653 (1922)
Q Consensus 1581 l~t~~gk~l~-----tf--~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFS 1653 (1922)
..+ +.... .+ ..+.++...++|...+. +.++-+..||..+++... +... ......+..+...
T Consensus 390 ~~~--~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig----t~~~Gl~~~~~~~~~~~~-~~~~----~~~~~~v~~i~~d 458 (781)
T 3v9f_A 390 NGK--RVAIYNKENRELLSNSVLCSLKDSEGNLWFG----TYLGNISYYNTRLKKFQI-IELE----KNELLDVRVFYED 458 (781)
T ss_dssp TTE--EEEECC-----CCCSBEEEEEECTTSCEEEE----ETTEEEEEECSSSCEEEE-CCST----TTCCCCEEEEEEC
T ss_pred CCC--CeEEEccCCCCCCCcceEEEEECCCCCEEEE----eccCCEEEEcCCCCcEEE-eccC----CCCCCeEEEEEEC
Confidence 765 21111 11 12466777777776664 344568999988776433 2210 0112334457777
Q ss_pred CCCCeEeecc---EEEEcCCCcceeeeccC-----CCce-EEEEecCCCEEEEEe----EEEecCCCeEEEEEcC---CC
Q 000177 1654 PSDTMLLWNG---ILWDRRNSVPVHRFDQF-----TDHG-GGGFHPAGNEVIINS----EVWDLRKFRLLRSVPS---LD 1717 (1922)
Q Consensus 1654 PdG~lLaSgg---rLWDlrtgk~I~kf~gh-----~~~V-sVaFSPdG~~LASGS----eIWDLrTgklL~tl~g---H~ 1717 (1922)
++|.+.+... ..||..+++..+..... ...+ ++...++|...+... -.||..+++. ..+.. ..
T Consensus 459 ~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~ 537 (781)
T 3v9f_A 459 KNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV-RKFNQYEGFC 537 (781)
T ss_dssp TTSEEEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE-EEECTTTTCS
T ss_pred CCCCEEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE-EEccCCCCCC
Confidence 8887666433 78888776543322211 2445 788888888665543 2567665543 33431 11
Q ss_pred ---ceeEEEccCCCEEEEE
Q 000177 1718 ---QTTITFNARGDVIYAI 1733 (1922)
Q Consensus 1718 ---~~sVaFSPdG~~LaSg 1733 (1922)
..++...++|.+.+++
T Consensus 538 ~~~i~~i~~d~~g~lWi~T 556 (781)
T 3v9f_A 538 SNTINQIYRSSKGQMWLAT 556 (781)
T ss_dssp CSCEEEEEECTTSCEEEEE
T ss_pred CCeeEEEEECCCCCEEEEE
Confidence 2678888888877664
No 296
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.22 E-value=10 Score=45.53 Aligned_cols=149 Identities=11% Similarity=0.071 Sum_probs=83.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee--ee----ccCCCCeeEEEeeecCC----CcEEEE-e--cCCcE
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE--SC----TSHQAPVTLVQSHLSGE----TQLLLS-S--SSQDV 1576 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~--tL----~gHss~VtsLq~afSpD----G~lLaS-S--sDgtV 1576 (1922)
..-+.++|.|||.++++--..|.|++++..+++... .+ .........| +++|+ +.+.++ + .++.|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGi--a~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGI--ALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEE--EECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceee--EeccccccCCEEEEEEecCCCCEE
Confidence 567999999999977776668999999876655321 11 2234567888 88885 555554 3 34555
Q ss_pred EEeccCCCC------CCcce---Eec---cc--eeEEEcCCCCEEEEeecCC----------CCCeEEEEECCCCceee-
Q 000177 1577 HLWNASSIA------GGPMH---SFE---GC--KAARFSNSGNLFAALPTET----------SDRGILLYDIQTYQLEA- 1631 (1922)
Q Consensus 1577 kLWDl~t~~------gk~l~---tf~---gh--~sVaFSPDG~~LaSgS~~S----------~DgtIrIWDlrTgk~i~- 1631 (1922)
.-|.+.... ..... .+. .| ..+.|.|||.++++.+..+ ..+.|.-++... +.-.
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG-~ip~~ 188 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG-EPAPG 188 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS-SBCTT
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC-CccCC
Confidence 555554310 01111 121 24 4599999999888763211 123343334332 1000
Q ss_pred -eeccccccccCCCCcceE-EEEcCCCCeEeecc
Q 000177 1632 -KLSDTSVNLTGRGHAYSQ-IHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1632 -tL~d~s~~~~~~gh~~~v-VaFSPdG~lLaSgg 1663 (1922)
-|. .......+|..+. ++|+|+|.++++..
T Consensus 189 nPf~--~~~i~a~G~RNp~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 189 NPFP--GSPVYSYGHRNVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp CSST--TCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred CCCC--CCeEEeeCCCCcceEEECCCCCEEEEec
Confidence 000 0000113555554 99999998887543
No 297
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=94.13 E-value=12 Score=44.24 Aligned_cols=172 Identities=7% Similarity=-0.005 Sum_probs=95.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEEe-cCCcEEEeccCCCCCCcc
Q 000177 1512 LTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLSS-SSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1512 Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaSS-sDgtVkLWDl~t~~gk~l 1589 (1922)
.+|.+..+++ +|+.+. ...|+..++........+... ..+..+ .|++.+. ++.+- ..+.|..|++.. ....
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~-~~~~~l--~~d~~~~~ly~~D~~~~~I~r~~~~g--~~~~ 108 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL-ENAIAL--DFHHRRELVFWSDVTLDRILRANLNG--SNVE 108 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSC-SCEEEE--EEETTTTEEEEEETTTTEEEEEETTS--CSCE
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCC-CceEEE--EEeccccEEEEEeccCCceEEEecCC--CCce
Confidence 4566666644 444333 345888888665544444433 346788 7776544 44453 478899999875 3222
Q ss_pred eEe----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ec--
Q 000177 1590 HSF----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WN-- 1662 (1922)
Q Consensus 1590 ~tf----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sg-- 1662 (1922)
..+ .....+++.+.+..|+.+ +...+.|.++++........+. ........++++|.+..|. +.
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~--d~~~~~I~~~~~dG~~~~~l~~-------~~l~~P~~iavdp~~g~ly~td~~ 179 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWT--DSGTSRIEVANLDGAHRKVLLW-------QSLEKPRAIALHPMEGTIYWTDWG 179 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEE--ETTTTEEEEEETTSCSCEEEEC-------TTCSCEEEEEEETTTTEEEEEECS
T ss_pred EEEeCCCCCccEEEEecCCCeEEEE--cCCCCeEEEEcCCCCceEEEEe-------CCCCCcceEEEecCcCeEEEeccC
Confidence 222 223678998865555443 2566889999987543322221 0112223489998665444 43
Q ss_pred --cEEEEcC-CCcceeeec--cCCCceEEEEecCCCEEEEEe
Q 000177 1663 --GILWDRR-NSVPVHRFD--QFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1663 --grLWDlr-tgk~I~kf~--gh~~~VsVaFSPdG~~LASGS 1699 (1922)
++||-+. .|.....+. +...+..++|+|++..|..+.
T Consensus 180 ~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD 221 (349)
T 3v64_C 180 NTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 221 (349)
T ss_dssp SSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEE
Confidence 2455443 233333332 222334899999777666554
No 298
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=93.80 E-value=16 Score=44.30 Aligned_cols=138 Identities=7% Similarity=-0.029 Sum_probs=81.4
Q ss_pred CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCC----CceeeeccCCCCeeEEEeeecC-CCcEEEE-ecCCcEEEeccC
Q 000177 1510 ALLTCITFLGDSSHIA-VGSHTKELKIFDSNSS----SPLESCTSHQAPVTLVQSHLSG-ETQLLLS-SSSQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tg----k~l~tL~gHss~VtsLq~afSp-DG~lLaS-SsDgtVkLWDl~ 1582 (1922)
..+..++|++.+..|+ +-...+.|+.+++... .....+...-.....| ++.+ .++++++ ...+.|.+.++.
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl--avD~~~~~lY~~d~~~~~I~~~~~~ 189 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL--AVDWIHSNIYWTDSVLGTVSVADTK 189 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEE--EEETTTTEEEEEETTTTEEEEECTT
T ss_pred CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccE--EEEecCCceEEEECCCCeEEEEeCC
Confidence 5688999998665554 4456788999998652 2233333334556778 6665 4555556 357889999987
Q ss_pred CCCCCcceEe-c----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCC-CcceEEEEcCCC
Q 000177 1583 SIAGGPMHSF-E----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRG-HAYSQIHFSPSD 1656 (1922)
Q Consensus 1583 t~~gk~l~tf-~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~g-h~~~vVaFSPdG 1656 (1922)
. .....+ . ..+.+++.|.+.+|+.+.. +..+.|...++........+. .+ ...+-++|+|++
T Consensus 190 g---~~~~~l~~~~~~~P~~iavdp~~g~ly~td~-~~~~~I~~~~~dG~~~~~~~~--------~~l~~P~glavd~~~ 257 (400)
T 3p5b_L 190 G---VKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVDIYSLVT--------ENIQWPNGITLDLLS 257 (400)
T ss_dssp T---CSEEEEEECSSCCEEEEEEETTTTEEEEEEC-SSSCCEEEEETTSCSCEEEEC--------SSCSCEEEEEEETTT
T ss_pred C---CceEEEEeCCCCCcceEEEecccCeEEEEeC-CCCCEEEEEeCCCCccEEEEE--------CCCCceEEEEEEeCC
Confidence 4 222222 2 2478999996655555421 224678888887433322222 11 222349999877
Q ss_pred CeEee
Q 000177 1657 TMLLW 1661 (1922)
Q Consensus 1657 ~lLaS 1661 (1922)
..|..
T Consensus 258 ~~lY~ 262 (400)
T 3p5b_L 258 GRLYW 262 (400)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 65553
No 299
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.75 E-value=0.31 Score=53.49 Aligned_cols=156 Identities=21% Similarity=0.252 Sum_probs=102.1
Q ss_pred HHHHHHHhhhchhH-HHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHh-hhhhhHHHHhccccchh
Q 000177 541 EKYCIQCLETLGEY-VEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALA-AHRKFAALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lGEY-qE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl-~HkKfA~eFV~~gGlq~ 618 (1922)
+..++.+|.-+... .+.-..++..+++..++.+|.. .+..+...+++.|+.|. .+......+++.|+++.
T Consensus 61 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 132 (252)
T 4hxt_A 61 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEV 132 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence 33455555555544 4545566788899998888753 23345678899999999 56788888999999999
Q ss_pred hhccCCCcccc--cccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhc-chhHHHH
Q 000177 619 LLAVPRNNQTF--FGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAF-VFRAIID 694 (1922)
Q Consensus 619 LL~vPR~s~a~--tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf-~Fr~il~ 694 (1922)
|+++=+.+... .....||..|+... +..+.+.. ..++..-+.+|..+++..|.+|+..++.-. .-+....
T Consensus 133 L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 206 (252)
T 4hxt_A 133 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIK 206 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98887654322 12333444444422 22222222 135677778889888888888887776543 3566666
Q ss_pred HhhhcccHHHHHHHHh
Q 000177 695 AFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 695 ~FD~~dGLrkL~N~i~ 710 (1922)
.+-..+++..|++++.
T Consensus 207 ~l~~~~~i~~L~~ll~ 222 (252)
T 4hxt_A 207 AIVDAGGVEVLQKLLT 222 (252)
T ss_dssp HHHHTTHHHHHHHGGG
T ss_pred HHHHCCCHHHHHHHHC
Confidence 6666788888877764
No 300
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.71 E-value=5.7 Score=46.51 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=96.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCCcEEEEecCCcEEE-eccCCCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHL-WNASSIAGG 1587 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkL-WDl~t~~gk 1587 (1922)
+.+..+.+.+++..++.+ .+|.|.. ..+.|+.-. ....+...+..+ .+.+++.+++.+..+.+.. +|-.-...+
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~--~~~~~~~~~~~g~~G~~~~S~d~gG~tW~ 197 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNL--NRSPSGEYVAVSSRGSFYSTWEPGQTAWE 197 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEE--EECTTSCEEEEETTSSEEEEECTTCSSCE
T ss_pred CCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEE--EEcCCCcEEEEECCCcEEEEeCCCCCcee
Confidence 457888888777766665 4565422 223344332 224556678888 7888999998887665543 342100011
Q ss_pred cceEe--ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc--
Q 000177 1588 PMHSF--EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-- 1663 (1922)
Q Consensus 1588 ~l~tf--~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-- 1663 (1922)
.+..- .....+.+.++++.++.+ .++.+.+++...++....+..+.. ..+.....+.|.+++.+++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~g~~~~~~----~~G~~~~s~~D~G~tW~~~~~~~~---~~~~~~~~v~~~~~~~~~~~g~~g 270 (327)
T 2xbg_A 198 PHNRTTSRRLHNMGFTPDGRLWMIV----NGGKIAFSDPDNSENWGELLSPLR---RNSVGFLDLAYRTPNEVWLAGGAG 270 (327)
T ss_dssp EEECCSSSCEEEEEECTTSCEEEEE----TTTEEEEEETTEEEEECCCBCTTS---SCCSCEEEEEESSSSCEEEEESTT
T ss_pred ECCCCCCCccceeEECCCCCEEEEe----CCceEEEecCCCCCeeEeccCCcc---cCCcceEEEEecCCCEEEEEeCCC
Confidence 11110 123678888988877664 457777764333443332221100 0122344578888888777654
Q ss_pred -EEEEcCCCcceeeecc---CCCce-EEEEecCCCEEEEEe
Q 000177 1664 -ILWDRRNSVPVHRFDQ---FTDHG-GGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1664 -rLWDlrtgk~I~kf~g---h~~~V-sVaFSPdG~~LASGS 1699 (1922)
.++....|+.-..+.. ....+ .+.|.+++..++.|.
T Consensus 271 ~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~ 311 (327)
T 2xbg_A 271 ALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ 311 (327)
T ss_dssp CEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS
T ss_pred eEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC
Confidence 3444444443333321 22233 777776666666554
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=93.54 E-value=2.2 Score=51.14 Aligned_cols=141 Identities=14% Similarity=0.209 Sum_probs=84.0
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEECCCCCceee-ecc----CCC--CeeEEEeee---cCCCcEEEEec---------
Q 000177 1513 TCITFLGDSSHIAVGS-HTKELKIFDSNSSSPLES-CTS----HQA--PVTLVQSHL---SGETQLLLSSS--------- 1572 (1922)
Q Consensus 1513 t~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~l~t-L~g----Hss--~VtsLq~af---SpDG~lLaSSs--------- 1572 (1922)
-+++|.+....|..++ ..++|..|+...+..... +.+ ... .+..| .| .++++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl--~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGL--SLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEE--EESSSSSCCEEEEEEEETTTTCTTS
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEE--EEeccCCCCcEEEEEcccccccccc
Confidence 4789988666666666 899999999976644333 322 111 34677 77 58888888632
Q ss_pred -----CCcEEEeccC---CCCCCcceEec-----------------cceeEEEcCCCCEEEEeecCCCC-CeEEEEECCC
Q 000177 1573 -----SQDVHLWNAS---SIAGGPMHSFE-----------------GCKAARFSNSGNLFAALPTETSD-RGILLYDIQT 1626 (1922)
Q Consensus 1573 -----DgtVkLWDl~---t~~gk~l~tf~-----------------gh~sVaFSPDG~~LaSgS~~S~D-gtIrIWDlrT 1626 (1922)
+..|..||+. + ++.+.... +.+.++..++|+..+++ +.- +.|..+|...
T Consensus 94 ~~~~g~~~v~~~Dl~~~~t--g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~---s~~~~~I~rV~pdG 168 (334)
T 2p9w_A 94 QSSHGASSFHSFNLPLSEN--SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF---ALGMPAIARVSADG 168 (334)
T ss_dssp CCSSSCCEEEEEESSCCTT--CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE---EESSCEEEEECTTS
T ss_pred cccCCCCEEEEEcCCcCCC--CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC---CCCCCeEEEEeCCC
Confidence 5678899998 6 55554332 24678999999998887 333 5555555442
Q ss_pred CceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1627 YQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1627 gk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
. .+..+.-.. .........+-++++|+|++|+..
T Consensus 169 ~-~~~~~~~~~-~~~~~~~G~nGIv~~pdg~~Liv~ 202 (334)
T 2p9w_A 169 K-TVSTFAWES-GNGGQRPGYSGITFDPHSNKLIAF 202 (334)
T ss_dssp C-CEEEEEECC-CCSSSCCSCSEEEEETTTTEEEEE
T ss_pred C-EEeeeeecC-CCcccccCcceEEEeCCCCEEEEE
Confidence 2 222221000 000011222347888888776643
No 302
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.25 E-value=0.58 Score=50.43 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=98.5
Q ss_pred HHHHHhhhch-hHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhh-hhhhHHHHhccccchhhh
Q 000177 543 YCIQCLETLG-EYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAA-HRKFAALFVDRGGMQKLL 620 (1922)
Q Consensus 543 ~~l~~L~~lG-EYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~-HkKfA~eFV~~gGlq~LL 620 (1922)
..+.+|.-+. .-.+.-..+++.+++..++.+|.. .+..+...|++.|+.|.. .......+++.||++.|+
T Consensus 31 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~ 102 (210)
T 4db6_A 31 SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 102 (210)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHH
Confidence 3444444444 223444467788899988888863 123456789999999986 456778899999999998
Q ss_pred ccCCCcccc--cccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcch-hHHHHHh
Q 000177 621 AVPRNNQTF--FGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVF-RAIIDAF 696 (1922)
Q Consensus 621 ~vPR~s~a~--tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~F-r~il~~F 696 (1922)
.+=+..... .....+|..|+... +..+.+.. ..+|..-+.+|..++...+.+|+..++.-... +.....+
T Consensus 103 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 176 (210)
T 4db6_A 103 QLLSSPNEQILQEALWALSNIASGGNEQIQAVID------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176 (210)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH------cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 876554211 12222333444221 21122111 13567777788888899999998877655444 6666777
Q ss_pred hhcccHHHHHHHHh
Q 000177 697 DAQDGLQKLLGLLN 710 (1922)
Q Consensus 697 D~~dGLrkL~N~i~ 710 (1922)
-..+++..|++++.
T Consensus 177 ~~~g~i~~L~~ll~ 190 (210)
T 4db6_A 177 KEAGALEKLEQLQS 190 (210)
T ss_dssp HHTTHHHHHHHGGG
T ss_pred HHCCCHHHHHHHHh
Confidence 77788888888764
No 303
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=93.11 E-value=16 Score=42.40 Aligned_cols=147 Identities=7% Similarity=-0.084 Sum_probs=83.2
Q ss_pred CCEEEEEEcCCCCEE-EEEeCCCcEEEEECCC---CCcee-eeccCCCCeeEEEeeecC-CCcEEEE-ecCCcEEEeccC
Q 000177 1510 ALLTCITFLGDSSHI-AVGSHTKELKIFDSNS---SSPLE-SCTSHQAPVTLVQSHLSG-ETQLLLS-SSSQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lL-ASGS~DGtIkIWDl~t---gk~l~-tL~gHss~VtsLq~afSp-DG~lLaS-SsDgtVkLWDl~ 1582 (1922)
.....++|++++..| ++-...+.|..+++.. +.... .+...-.....| ++.+ .++++++ ...+.|.++++.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl--avd~~~~~ly~~d~~~~~I~~~~~~ 107 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL--AVDWIHSNIYWTDSVLGTVSVADTK 107 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE--EEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE--EEeecCCeEEEEECCCCEEEEEeCC
Confidence 457899999866555 4555668999999876 12222 233222445778 6665 4455556 457889999986
Q ss_pred CCCCCcceEe-c----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1583 SIAGGPMHSF-E----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1583 t~~gk~l~tf-~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
. .....+ . ..+.++++|.+.+++.+.. +..+.|..+++.. .....+.. ..-...+-++|+|++.
T Consensus 108 g---~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~-~~~~~I~~~~~dG-~~~~~~~~------~~~~~P~gla~d~~~~ 176 (316)
T 1ijq_A 108 G---VKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNG-VDIYSLVT------ENIQWPNGITLDLLSG 176 (316)
T ss_dssp S---SSEEEEEECTTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTS-CCEEEEEC------SSCSCEEEEEEETTTT
T ss_pred C---CceEEEEECCCCCcceEEeCCCCCEEEEEcc-CCCCeEEEEcCCC-CCeEEEEE------CCCCCceEEEEeccCC
Confidence 4 222222 2 2378999996655544421 1236788888763 33333320 0112233499998766
Q ss_pred eEe-ecc-----EEEEcC
Q 000177 1658 MLL-WNG-----ILWDRR 1669 (1922)
Q Consensus 1658 lLa-Sgg-----rLWDlr 1669 (1922)
.|. +.. ..+|+.
T Consensus 177 ~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 177 RLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp EEEEEETTTTEEEEEETT
T ss_pred EEEEEECCCCeEEEEecC
Confidence 554 443 455654
No 304
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=92.76 E-value=1.1 Score=54.87 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=78.9
Q ss_pred eccceeEEEcC-CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eEeecc------
Q 000177 1592 FEGCKAARFSN-SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWNG------ 1663 (1922)
Q Consensus 1592 f~gh~sVaFSP-DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSgg------ 1663 (1922)
|.....++|+| ++..|+.+. .. +.|+.+|+.++....... .......++|+++|+ ++++..
T Consensus 136 ~~~P~~lavdp~~~g~Lyv~d--~~-~~I~~id~~~~~v~~~~~--------~~~~P~~ia~d~~G~~lyvad~~~~~~~ 204 (430)
T 3tc9_A 136 FGGAVWLSFDPKNHNHLYLVG--EQ-HPTRLIDFEKEYVSTVYS--------GLSKVRTICWTHEADSMIITNDQNNNDR 204 (430)
T ss_dssp CSCCCEEEEETTEEEEEEEEE--BT-EEEEEEETTTTEEEEEEC--------CCSCEEEEEECTTSSEEEEEECCSCTTS
T ss_pred CCCCCEEEECCCCCCeEEEEe--CC-CcEEEEECCCCEEEEEec--------CCCCcceEEEeCCCCEEEEEeCCCCccc
Confidence 44557899998 455555542 22 789999998766543332 122333499999999 555542
Q ss_pred --EEEEcCCCcce--eeeccCCCceEEEEec-CCCEEEEEe---E--EEecCCCeEEE--EEcCC-CceeEEEccCCCEE
Q 000177 1664 --ILWDRRNSVPV--HRFDQFTDHGGGGFHP-AGNEVIINS---E--VWDLRKFRLLR--SVPSL-DQTTITFNARGDVI 1730 (1922)
Q Consensus 1664 --rLWDlrtgk~I--~kf~gh~~~VsVaFSP-dG~~LASGS---e--IWDLrTgklL~--tl~gH-~~~sVaFSPdG~~L 1730 (1922)
.+|-...+... ..+.....+..++++| +|..+++.. + .|+..++.... .+... ..+.++|+|+|++|
T Consensus 205 ~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 205 PNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp EEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred ceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 34444444332 3444444455889999 676655543 3 55666554422 22222 23789999999988
Q ss_pred EEEE
Q 000177 1731 YAIL 1734 (1922)
Q Consensus 1731 aSgs 1734 (1922)
+.+.
T Consensus 285 yv~d 288 (430)
T 3tc9_A 285 YIVV 288 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8763
No 305
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=92.52 E-value=0.18 Score=55.99 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=101.9
Q ss_pred HHHHHHHhhhchh-HHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhH-HHHhccccchh
Q 000177 541 EKYCIQCLETLGE-YVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFA-ALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lGE-YqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA-~eFV~~gGlq~ 618 (1922)
+...+.+|.-+.. ..+.-..++..+++..++.+|.. .+..+...+++.|+.|..+.... ..+++.|+++.
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 142 (252)
T 4db8_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHH
Confidence 3445555555554 34445567788899998888753 23355678899999999998888 88999999999
Q ss_pred hhccCCCccc--ccccceeeehhcchh-hHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhc-chhHHHH
Q 000177 619 LLAVPRNNQT--FFGLSSCLFTIGSLQ-GIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAF-VFRAIID 694 (1922)
Q Consensus 619 LL~vPR~s~a--~tgvS~Clyylay~~-~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf-~Fr~il~ 694 (1922)
|+++=+.+.. -.....||..|+... ...+.+.. ..+|..-+.+|..++..-+.+|+..++.-. ..+....
T Consensus 143 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 216 (252)
T 4db8_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 216 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9887655421 123334444555422 22222221 235667778888888888988887777443 4455555
Q ss_pred HhhhcccHHHHHHHHh
Q 000177 695 AFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 695 ~FD~~dGLrkL~N~i~ 710 (1922)
.+-..+++..|++++.
T Consensus 217 ~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 217 AVKEAGALEKLEQLQS 232 (252)
T ss_dssp HHHHTTHHHHHHTTTT
T ss_pred HHHHCCcHHHHHHHhC
Confidence 6666677777776653
No 306
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=92.34 E-value=2.7 Score=50.60 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=82.4
Q ss_pred CCeeEEEeeecCCCcEEEEec-CCcEEEeccCCCCCCc--ceEec--------cceeEEEcCC----CCEEEEeecCCCC
Q 000177 1552 APVTLVQSHLSGETQLLLSSS-SQDVHLWNASSIAGGP--MHSFE--------GCKAARFSNS----GNLFAALPTETSD 1616 (1922)
Q Consensus 1552 s~VtsLq~afSpDG~lLaSSs-DgtVkLWDl~t~~gk~--l~tf~--------gh~sVaFSPD----G~~LaSgS~~S~D 1616 (1922)
..-+.| +|.|||.++++.. .+.|++++... ++. +..+. +...++|+|+ +..+++-+ ...+
T Consensus 32 ~~P~~i--a~~pdG~llVter~~G~I~~v~~~~--g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt-~~~~ 106 (347)
T 3das_A 32 NSPWGL--APLPGGDLLVSSRDEATITRVDAKT--GRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT-SASD 106 (347)
T ss_dssp SSEEEE--EECTTSCEEEEETTTCEEEEECTTT--CCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE-CSSS
T ss_pred CCceEE--EEcCCCcEEEEEecCCEEEEEECCC--CcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe-cCCC
Confidence 445788 8899999999987 89999998654 322 22221 2367999995 44444321 1234
Q ss_pred CeEEEEECCCCc--------eeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------------EEEEcCC-C
Q 000177 1617 RGILLYDIQTYQ--------LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------------ILWDRRN-S 1671 (1922)
Q Consensus 1617 gtIrIWDlrTgk--------~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------------rLWDlrt-g 1671 (1922)
+.|.-|....+. ....+.. . .....|....+.|.|+|.++++.| +||-+.. +
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~--~-p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRG--I-PKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEE--E-CCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEc--C-CCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 556666655421 1111110 0 012356666799999999888743 6776652 2
Q ss_pred c----------ceeeeccCCCceEEEEecCCCEEEEE
Q 000177 1672 V----------PVHRFDQFTDHGGGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1672 k----------~I~kf~gh~~~VsVaFSPdG~~LASG 1698 (1922)
+ .+.. .++.+...++|+|+|...++-
T Consensus 184 ~ip~~nPf~~~~i~a-~G~RNp~Gla~dp~G~L~~~d 219 (347)
T 3das_A 184 EPAPGNPFPGSPVYS-YGHRNVQGLAWDDKQRLFASE 219 (347)
T ss_dssp SBCTTCSSTTCCEEE-BCCSBCCEEEECTTCCEEEEE
T ss_pred CccCCCCCCCCeEEe-eCCCCcceEEECCCCCEEEEe
Confidence 2 1222 366667789999988765543
No 307
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=92.32 E-value=14 Score=44.02 Aligned_cols=143 Identities=8% Similarity=0.109 Sum_probs=76.6
Q ss_pred CeeEEEeeecCCCc-EEEEecCCcEEEeccCCCCCCcceEe-----c---cceeEEEcCC----CCEEEEeecCCC----
Q 000177 1553 PVTLVQSHLSGETQ-LLLSSSSQDVHLWNASSIAGGPMHSF-----E---GCKAARFSNS----GNLFAALPTETS---- 1615 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~-lLaSSsDgtVkLWDl~t~~gk~l~tf-----~---gh~sVaFSPD----G~~LaSgS~~S~---- 1615 (1922)
.-+.| +|.|+|+ ++++...+.|++++........+..+ . +...++|+|+ +..+++-+....
T Consensus 19 ~P~~i--~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWAL--AFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEE--EECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEE--EEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34677 8899999 88887789999987532101111111 1 2367999995 444444211111
Q ss_pred CCeEEEEECCCC--c--eeeeeccccccccCCCCcceEEEEcCCCCeEeecc----------------EEEEcCC-Cc--
Q 000177 1616 DRGILLYDIQTY--Q--LEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG----------------ILWDRRN-SV-- 1672 (1922)
Q Consensus 1616 DgtIrIWDlrTg--k--~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg----------------rLWDlrt-gk-- 1672 (1922)
...|..|+...+ . ....+-..........|....+.|.|+|.++++.+ +||-+.. ++
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666666432 1 11111100000011245555699999998888742 5666542 22
Q ss_pred -----------ceeee-ccCCCceEEEEec-CCCEEEE
Q 000177 1673 -----------PVHRF-DQFTDHGGGGFHP-AGNEVII 1697 (1922)
Q Consensus 1673 -----------~I~kf-~gh~~~VsVaFSP-dG~~LAS 1697 (1922)
....+ .++.+...++|+| +|...++
T Consensus 177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 11112 2455566899999 5655554
No 308
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=92.25 E-value=4.7 Score=49.57 Aligned_cols=108 Identities=8% Similarity=0.074 Sum_probs=63.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCC---Cc-EEEEECCCCCce--eeeccCCCCeeEEEeeecC-CCcEEEEe-cCCcEEEecc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHT---KE-LKIFDSNSSSPL--ESCTSHQAPVTLVQSHLSG-ETQLLLSS-SSQDVHLWNA 1581 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~D---Gt-IkIWDl~tgk~l--~tL~gHss~VtsLq~afSp-DG~lLaSS-sDgtVkLWDl 1581 (1922)
.....++|+++|+++++.... .. +..++.. +... ..+. .-.....+ ++++ ++.++++. .++.|+.+|.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~-~~~~P~gi--avd~~~G~lyv~d~~~~~V~~~d~ 257 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLSLC-NARGAKTC--AVHPQNGKIYYTRYHHAMISSYDP 257 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEEEE-ECSSBCCC--EECTTTCCEEECBTTCSEEEEECT
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECC-CCeecccccc-ccCCCCEE--EEeCCCCeEEEEECCCCEEEEEEC
Confidence 568999999999944444321 12 2233322 2111 1121 12233456 6788 77777774 4788999998
Q ss_pred CCCCCCcceEecc------ceeEEEcCCCCEEEEeecCCCCCeEEEEECC
Q 000177 1582 SSIAGGPMHSFEG------CKAARFSNSGNLFAALPTETSDRGILLYDIQ 1625 (1922)
Q Consensus 1582 ~t~~gk~l~tf~g------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlr 1625 (1922)
.+ +.....+.. ...++|+|++++|+.+ +...+.|+.+|..
T Consensus 258 ~~--g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva--d~~~~~I~~~~~d 303 (433)
T 4hw6_A 258 AT--GTLTEEEVMMDTKGSNFHIVWHPTGDWAYII--YNGKHCIYRVDYN 303 (433)
T ss_dssp TT--CCEEEEEEECSCCSSCEEEEECTTSSEEEEE--ETTTTEEEEEEBC
T ss_pred CC--CeEEEEEeccCCCCCcccEEEeCCCCEEEEE--eCCCCEEEEEeCC
Confidence 75 443122211 2469999999965554 2567889998865
No 309
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=92.06 E-value=13 Score=44.94 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=85.0
Q ss_pred cCCcEEEeccCCCCCCcc-eEecc--------c-eeEEEcC--CCC-EEEEeecCCCCCeEEEEECCCCceeeeeccccc
Q 000177 1572 SSQDVHLWNASSIAGGPM-HSFEG--------C-KAARFSN--SGN-LFAALPTETSDRGILLYDIQTYQLEAKLSDTSV 1638 (1922)
Q Consensus 1572 sDgtVkLWDl~t~~gk~l-~tf~g--------h-~sVaFSP--DG~-~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~ 1638 (1922)
.+|.|.+||..+...+.. ..+.+ + ..+.+.+ ++. +|+.+.....+.+|.+|++..+....++-....
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 478899999874212211 12222 1 4566655 454 444443333467888988875432222210000
Q ss_pred cccCCCCcceEEEEcCCCCeEeecc--------------------EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEE
Q 000177 1639 NLTGRGHAYSQIHFSPSDTMLLWNG--------------------ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1639 ~~~~~gh~~~vVaFSPdG~lLaSgg--------------------rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASG 1698 (1922)
...-...+.+.+.++|.+++++. .+|-+..++......+......++|+|||++|..+
T Consensus 161 --g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYva 238 (355)
T 3sre_A 161 --HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIA 238 (355)
T ss_dssp --CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred --cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEE
Confidence 00122344588999998766532 45554444322223333344489999999988777
Q ss_pred e----E--EEecC-CCeE--EEEEcCCCc--eeEEEcc-CCCEEEEE
Q 000177 1699 S----E--VWDLR-KFRL--LRSVPSLDQ--TTITFNA-RGDVIYAI 1733 (1922)
Q Consensus 1699 S----e--IWDLr-Tgkl--L~tl~gH~~--~sVaFSP-dG~~LaSg 1733 (1922)
. + .|++. .+++ .+.+. ... -.+++.+ +|++.+++
T Consensus 239 dt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 239 ELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred eCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEe
Confidence 6 3 45664 2332 22332 222 5889999 59987766
No 310
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=91.83 E-value=0.48 Score=52.53 Aligned_cols=155 Identities=16% Similarity=0.143 Sum_probs=100.4
Q ss_pred HHHHHHhh-hchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhh-hhhhHHHHhccccchhh
Q 000177 542 KYCIQCLE-TLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAA-HRKFAALFVDRGGMQKL 619 (1922)
Q Consensus 542 ~~~l~~L~-~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~-HkKfA~eFV~~gGlq~L 619 (1922)
+..+++|. -+....+....++..+++..++.+|.. .+..+...|++.|..|.. .......+++.||++.|
T Consensus 30 ~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 101 (252)
T 4db8_A 30 LSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 33444442 233344445567788888888887753 123467789999999998 57888999999999999
Q ss_pred hccCCCccc--ccccceeeehhcchhhHH-HHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhc-chhHHHHH
Q 000177 620 LAVPRNNQT--FFGLSSCLFTIGSLQGIM-ERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAF-VFRAIIDA 695 (1922)
Q Consensus 620 L~vPR~s~a--~tgvS~Clyylay~~~aM-ERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf-~Fr~il~~ 695 (1922)
+.+=+.+.. -.....+|..|+...... +.+... ..|..-+.+|..++...|.+|+..++.-. ......+.
T Consensus 102 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 175 (252)
T 4db8_A 102 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA------GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 175 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC------CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 887665421 112233444444443332 222211 36777788899888888888887766443 35566666
Q ss_pred hhhcccHHHHHHHHh
Q 000177 696 FDAQDGLQKLLGLLN 710 (1922)
Q Consensus 696 FD~~dGLrkL~N~i~ 710 (1922)
+-..+++..|++++.
T Consensus 176 ~~~~~~i~~L~~ll~ 190 (252)
T 4db8_A 176 VIDAGALPALVQLLS 190 (252)
T ss_dssp HHHTTCHHHHHHGGG
T ss_pred HHHCCCHHHHHHHHC
Confidence 666788998888774
No 311
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.73 E-value=30 Score=45.98 Aligned_cols=189 Identities=5% Similarity=-0.107 Sum_probs=101.1
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----CceeeeccCCCCeeEEEeeecCCC-cEEEE-ecCCcEEEeccC
Q 000177 1510 ALLTCITFLGDSS-HIAVGSHTKELKIFDSNSS----SPLESCTSHQAPVTLVQSHLSGET-QLLLS-SSSQDVHLWNAS 1582 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tg----k~l~tL~gHss~VtsLq~afSpDG-~lLaS-SsDgtVkLWDl~ 1582 (1922)
..+..++|++.+. ++++-...+.|+.+++... .....+...-.....| ++...+ +++++ ...+.|.+.++.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL--AvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL--AVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE--EEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee--eeeecCCcEEEEecCCCeEEEEeCC
Confidence 5678999998555 4455556788999998753 2233333334556678 566555 45555 357889999987
Q ss_pred CCCCCcceEec-----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1583 SIAGGPMHSFE-----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1583 t~~gk~l~tf~-----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
. ....++- ..+.|++.|.+.+|+.+.. +..+.|...++........+. . .-....-+++++.+.
T Consensus 502 G---~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~-g~~~~I~~~~~dG~~~~~lv~-~------~l~~P~GLavD~~~~ 570 (791)
T 3m0c_C 502 G---VKRKTLFRENGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVDIYSLVT-E------NIQWPNGITLDLLSG 570 (791)
T ss_dssp S---SSEEEEEECTTCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCCEEEEEC-S------SCSCEEEEEEETTTT
T ss_pred C---CeEEEEEeCCCCCcceEEEecCCCCEEEecC-CCCCeEEEEecCCCceEEEEe-C------CCCCceEEEEecCCC
Confidence 4 3333332 2378999997555554421 223678888887443332222 0 012223399997665
Q ss_pred eEe-ecc---EEEEcC-CCcceeeec-c---CCCceEEEEecCCCEEEEEe----EEE--ecCCCeEEEEE
Q 000177 1658 MLL-WNG---ILWDRR-NSVPVHRFD-Q---FTDHGGGGFHPAGNEVIINS----EVW--DLRKFRLLRSV 1713 (1922)
Q Consensus 1658 lLa-Sgg---rLWDlr-tgk~I~kf~-g---h~~~VsVaFSPdG~~LASGS----eIW--DLrTgklL~tl 1713 (1922)
.|. +.. +||-+. .|...+.+. . ....+.+++. +.+|+... .|| |..+++.+.++
T Consensus 571 ~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 571 RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 554 433 444443 233333332 2 2233466653 33444333 344 33455444444
No 312
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=91.45 E-value=25 Score=41.01 Aligned_cols=203 Identities=7% Similarity=0.037 Sum_probs=104.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeec---cCCCCeeEEEeeecCCCcEEEEecCCcE-EEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCT---SHQAPVTLVQSHLSGETQLLLSSSSQDV-HLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~---gHss~VtsLq~afSpDG~lLaSSsDgtV-kLWDl~t~~ 1585 (1922)
..+.++.|++ +..++ ++..+.|.. ..+.|+.-.... .+...+..| .+.+++.+++.+.++.| +-+|-
T Consensus 80 ~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~g~v~~S~Dg---- 150 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLI--KALGNGSAEMITNVGAIYRTKDS---- 150 (327)
T ss_dssp CEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEE--EEEETTEEEEEETTCCEEEESST----
T ss_pred ccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEE--EEECCCCEEEEeCCccEEEEcCC----
Confidence 5688999986 44444 456665544 333344333222 234557777 66667788877776654 33332
Q ss_pred CCcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEEC--CCCceeeeeccccccccCCCCcceEEEEcCCCCe
Q 000177 1586 GGPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDI--QTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTM 1658 (1922)
Q Consensus 1586 gk~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDl--rTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~l 1658 (1922)
++.-... .....+.|.+++.+++.+ ...+..+-+|- .+.+.+... .......+.+.+++.+
T Consensus 151 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~g---~~G~~~~S~d~gG~tW~~~~~~---------~~~~~~~~~~~~~g~~ 218 (327)
T 2xbg_A 151 GKNWQALVQEAIGVMRNLNRSPSGEYVAVS---SRGSFYSTWEPGQTAWEPHNRT---------TSRRLHNMGFTPDGRL 218 (327)
T ss_dssp TSSEEEEECSCCCCEEEEEECTTSCEEEEE---TTSSEEEEECTTCSSCEEEECC---------SSSCEEEEEECTTSCE
T ss_pred CCCCEEeecCCCcceEEEEEcCCCcEEEEE---CCCcEEEEeCCCCCceeECCCC---------CCCccceeEECCCCCE
Confidence 2211111 123678899998888776 33344444442 232222110 1223344778888887
Q ss_pred Eeecc--EEEEc--CCCcceeeecc----CCCce-EEEEecCCCEEEEEeE--E-EecCCCeEEEEEcC---C-Cc-eeE
Q 000177 1659 LLWNG--ILWDR--RNSVPVHRFDQ----FTDHG-GGGFHPAGNEVIINSE--V-WDLRKFRLLRSVPS---L-DQ-TTI 1721 (1922)
Q Consensus 1659 LaSgg--rLWDl--rtgk~I~kf~g----h~~~V-sVaFSPdG~~LASGSe--I-WDLrTgklL~tl~g---H-~~-~sV 1721 (1922)
++.+. .++-. ..++.-..+.. ....+ .+.|.|++..++++.. + +....++.-..+.. + .. ..|
T Consensus 219 ~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~v 298 (327)
T 2xbg_A 219 WMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKI 298 (327)
T ss_dssp EEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEEESSTTSSCEECGGGTTSSSCCCEE
T ss_pred EEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEEeCCCCcccEEcCccCCCCCCeEEE
Confidence 76543 33322 11322111211 11234 7889998888887762 4 33333433333331 1 12 678
Q ss_pred EEccCCCEEEEE
Q 000177 1722 TFNARGDVIYAI 1733 (1922)
Q Consensus 1722 aFSPdG~~LaSg 1733 (1922)
.|.+++.+++++
T Consensus 299 ~~~~~~~~~~~G 310 (327)
T 2xbg_A 299 LFFSPDQGFILG 310 (327)
T ss_dssp EEEETTEEEEEC
T ss_pred EEECCCceEEEc
Confidence 887666655554
No 313
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=91.11 E-value=39 Score=44.99 Aligned_cols=159 Identities=8% Similarity=-0.021 Sum_probs=89.0
Q ss_pred CCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEe-cCCcEEEeccCCCC--CCcceEec----cceeEEE
Q 000177 1529 HTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSS-SSQDVHLWNASSIA--GGPMHSFE----GCKAARF 1600 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSS-sDgtVkLWDl~t~~--gk~l~tf~----gh~sVaF 1600 (1922)
....|+..++........+.. ...+..| .|++. +.++++. ..+.|+.+++.... +.....+. ....+++
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~-~~~~~gl--~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPN-LRNVVAL--DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECS-CSSEEEE--EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEE
T ss_pred cccceeEeeccCCcceeeecC-CCceEEE--eecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeee
Confidence 345688888876655444433 4556778 67764 4455553 47789888886410 01122222 2367899
Q ss_pred cCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-eEeecc----EEEEcC-CCcce
Q 000177 1601 SNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT-MLLWNG----ILWDRR-NSVPV 1674 (1922)
Q Consensus 1601 SPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~-lLaSgg----rLWDlr-tgk~I 1674 (1922)
.+.++.|+.+ +...+.|.+.++........+. . .......|+++|.+. ++++.. +||-+. .|...
T Consensus 479 D~~~~~LY~t--D~~~~~I~v~~ldG~~~~~l~~-~------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~ 549 (791)
T 3m0c_C 479 DWIHSNIYWT--DSVLGTVSVADTKGVKRKTLFR-E------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549 (791)
T ss_dssp ETTTTEEEEE--ETTTTEEEEEETTSSSEEEEEE-C------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE
T ss_pred eecCCcEEEE--ecCCCeEEEEeCCCCeEEEEEe-C------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce
Confidence 9877655554 3667899999998544332222 0 111223489998754 444441 555444 24433
Q ss_pred eeecc--CCCceEEEEecCCCEEEEEe
Q 000177 1675 HRFDQ--FTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1675 ~kf~g--h~~~VsVaFSPdG~~LASGS 1699 (1922)
..+.. ...+..+++.+.+..|+.+.
T Consensus 550 ~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 550 YSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 33322 22344899998777666554
No 314
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=90.93 E-value=16 Score=42.83 Aligned_cols=140 Identities=8% Similarity=-0.016 Sum_probs=81.1
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecC-CCcEEEE-ecCCcEEEeccCCCCC
Q 000177 1511 LLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSG-ETQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSp-DG~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
.+..++|++.+. +.++-...+.|..+++..+.... .+...-.....+ ++.+ .+.++.+ ...+.|.++++..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl--avd~~~g~ly~~d~~~~~I~~~~~dG--- 110 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL--ACDWLGEKLYWTDSETNRIEVSNLDG--- 110 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE--EEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE--EEEcCCCeEEEEECCCCEEEEEECCC---
Confidence 366889998544 55565677889999987664322 222222345667 5665 4555566 3577899999864
Q ss_pred CcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-
Q 000177 1587 GPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL- 1660 (1922)
Q Consensus 1587 k~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa- 1660 (1922)
.....+ ...+.+++.|.+.+|+.+.. +..+.|..+++.... ...+-.. .-...+-++|+|++..|.
T Consensus 111 ~~~~~l~~~~~~~P~giavdp~~g~ly~td~-~~~~~I~r~~~dG~~-~~~~~~~------~l~~Pnglavd~~~~~lY~ 182 (318)
T 3sov_A 111 SLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMDGSS-RFIIINS------EIYWPNGLTLDYEEQKLYW 182 (318)
T ss_dssp CSCEEEECSSCSSEEEEEEEGGGTEEEEEEC-SSSCEEEEEETTSCS-CEEEECS------SCSCEEEEEEETTTTEEEE
T ss_pred CcEEEEEeCCCCCccEEEEeCCCCEEEEEec-CCCCEEEEEEcCCCC-eEEEEEC------CCCCccEEEEeccCCEEEE
Confidence 222222 12378999987555555421 235778888876432 2222100 012223499999665544
Q ss_pred ecc
Q 000177 1661 WNG 1663 (1922)
Q Consensus 1661 Sgg 1663 (1922)
+..
T Consensus 183 aD~ 185 (318)
T 3sov_A 183 ADA 185 (318)
T ss_dssp EET
T ss_pred EEC
Confidence 444
No 315
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=90.87 E-value=25 Score=44.38 Aligned_cols=134 Identities=8% Similarity=0.074 Sum_probs=71.0
Q ss_pred CeeEEEeeecCC--CcEEEEec-CCcEEEeccCCCCCCcceEe--------ccceeEEE-------cCCCCEEEEeecCC
Q 000177 1553 PVTLVQSHLSGE--TQLLLSSS-SQDVHLWNASSIAGGPMHSF--------EGCKAARF-------SNSGNLFAALPTET 1614 (1922)
Q Consensus 1553 ~VtsLq~afSpD--G~lLaSSs-DgtVkLWDl~t~~gk~l~tf--------~gh~sVaF-------SPDG~~LaSgS~~S 1614 (1922)
....| +|+|. ++++++.. .+.|++.|+.. +. +.++ ...+.++| ++++++|+.+....
T Consensus 140 ~p~~l--a~dp~~~~~Lyv~~~~~~~i~~ID~~~--~~-v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 140 DNGRL--AFDPLNKDHLYICYDGHKAIQLIDLKN--RM-LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp SEEEE--EEETTEEEEEEEEEETEEEEEEEETTT--TE-EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CCCEE--EEccCCCCEEEEEECCCCeEEEEECCC--CE-EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 34567 77873 45555533 45688888875 33 3222 12478999 99999666652221
Q ss_pred -C---CCeEEEEECCC-Ccee-----eeeccccccccCCCCcceEEEEcCCC-CeEeecc-----EEEEcC-------CC
Q 000177 1615 -S---DRGILLYDIQT-YQLE-----AKLSDTSVNLTGRGHAYSQIHFSPSD-TMLLWNG-----ILWDRR-------NS 1671 (1922)
Q Consensus 1615 -~---DgtIrIWDlrT-gk~i-----~tL~d~s~~~~~~gh~~~vVaFSPdG-~lLaSgg-----rLWDlr-------tg 1671 (1922)
. ...|.+++... +... ..+. . ..|. ..++++|++ .++++.. ..||+. ++
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-----~--~~~p-~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg 286 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIA-----A--YKQC-NGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNG 286 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEE-----E--ESCC-CCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTT
T ss_pred CCcccCceEEEEecCCCCceeecccceeec-----c--CCCc-eEEEEcCCCCeEEEEECCCCEEEEEecccccccccCc
Confidence 0 12366666443 2221 1221 0 0122 237889954 5455443 677776 44
Q ss_pred cc-----------eee-eccC--CCceEEEEecCCCEEEEEe
Q 000177 1672 VP-----------VHR-FDQF--TDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1672 k~-----------I~k-f~gh--~~~VsVaFSPdG~~LASGS 1699 (1922)
.. ... +... .....++|+|+|++|..+.
T Consensus 287 ~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD 328 (496)
T 3kya_A 287 GSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV 328 (496)
T ss_dssp CCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred eeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence 43 112 2111 2234899999999655553
No 316
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=90.70 E-value=33 Score=41.45 Aligned_cols=113 Identities=5% Similarity=-0.064 Sum_probs=74.1
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEe-c-CCcEEEeccCCCC
Q 000177 1510 ALLTCITFLG-DSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSS-S-SQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSP-DG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSS-s-DgtVkLWDl~t~~ 1585 (1922)
.....+++.+ .+++.++-...+.|.+.+++.......+...-.....| ++.|.+ .++.+- . .+.|...++..
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~i--avdp~~g~ly~td~~~~~~I~~~~~dG-- 234 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI--VVDPVHGFMYWTDWGTPAKIKKGGLNG-- 234 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEE--EEETTTTEEEEEECSSSCCEEEEETTS--
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceE--EEecccCeEEEEeCCCCCEEEEEeCCC--
Confidence 4578899998 45555566677899999987554433334334456788 788754 444553 2 46788888763
Q ss_pred CCcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCce
Q 000177 1586 GGPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1586 gk~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~ 1629 (1922)
.....+ ...+.++|++++..|+.+ +...+.|..+|+.....
T Consensus 235 -~~~~~~~~~~l~~P~glavd~~~~~lY~a--D~~~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 235 -VDIYSLVTENIQWPNGITLDLLSGRLYWV--DSKLHSISSIDVNGGNR 280 (400)
T ss_dssp -CSCEEEECSSCSCEEEEEEETTTTEEEEE--ETTTTEEEEEETTSCCC
T ss_pred -CccEEEEECCCCceEEEEEEeCCCEEEEE--ECCCCEEEEEeCCCCcc
Confidence 333332 223789999987777666 36678999999875433
No 317
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=89.46 E-value=15 Score=44.47 Aligned_cols=163 Identities=15% Similarity=0.256 Sum_probs=93.8
Q ss_pred EEEEecCCcEEEeccCCCCCCcceEecc--ceeEEEcC----CCCE--EEEeecCCC--CCeEEEEECC--CCceeeeec
Q 000177 1567 LLLSSSSQDVHLWNASSIAGGPMHSFEG--CKAARFSN----SGNL--FAALPTETS--DRGILLYDIQ--TYQLEAKLS 1634 (1922)
Q Consensus 1567 lLaSSsDgtVkLWDl~t~~gk~l~tf~g--h~sVaFSP----DG~~--LaSgS~~S~--DgtIrIWDlr--Tgk~i~tL~ 1634 (1922)
+|.+...+-+.+||+ + ++.++.+.. .+.+..-| .|+. ++.++. .. +++|.+|++. ++. +..+.
T Consensus 43 ii~t~k~~gL~Vydl-~--G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~-R~~~~n~l~vf~iDp~~~~-l~~i~ 117 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-D--GKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASN-RSEGKNTIEIYAIDGKNGT-LQSMT 117 (355)
T ss_dssp EEEEETTTEEEEEET-T--SCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEE-CSTTCCEEEEEEECTTTCC-EEECS
T ss_pred EEEEcCCCCEEEEcC-C--CcEEEEccCCCcccEEEecccccCCceEeEEEEeC-CCCCCCeEEEEEECCCCCc-eeecc
Confidence 444456788999999 4 788887763 24444444 3333 333322 34 6889999773 433 44442
Q ss_pred cccccccCCC-CcceEEEE--cCC-CC-eEeecc-----EEEEcC-------CCcceeeeccCCCceEEEEecCCCEEEE
Q 000177 1635 DTSVNLTGRG-HAYSQIHF--SPS-DT-MLLWNG-----ILWDRR-------NSVPVHRFDQFTDHGGGGFHPAGNEVII 1697 (1922)
Q Consensus 1635 d~s~~~~~~g-h~~~vVaF--SPd-G~-lLaSgg-----rLWDlr-------tgk~I~kf~gh~~~VsVaFSPdG~~LAS 1697 (1922)
...... ..+ ....-+|+ +|. +. +++... ..|++. +++.+++|....+.-.|...+...+|..
T Consensus 118 ~~~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv 196 (355)
T 3amr_A 118 DPDHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI 196 (355)
T ss_dssp CTTSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred ccccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence 110000 001 11111555 674 44 333333 566662 3467888877665558999998888988
Q ss_pred EeE---EEecC-------CCeEEEEEc-CC---CceeEEE--ccCCC-EEEEEEc
Q 000177 1698 NSE---VWDLR-------KFRLLRSVP-SL---DQTTITF--NARGD-VIYAILR 1735 (1922)
Q Consensus 1698 GSe---IWDLr-------TgklL~tl~-gH---~~~sVaF--SPdG~-~LaSgs~ 1735 (1922)
+-+ ||-+. +++++..+. ++ +...+++ .++|+ +|++++.
T Consensus 197 ~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ 251 (355)
T 3amr_A 197 AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ 251 (355)
T ss_dssp EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC
Confidence 884 88765 356776664 21 1245655 66777 7777754
No 318
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=89.04 E-value=2 Score=56.14 Aligned_cols=140 Identities=7% Similarity=-0.083 Sum_probs=76.5
Q ss_pred CEEEEEEcCCCCEEEEE-eCCCcEEEEECCC----CCceeeeccCCCCeeEEEeeecC-CCcEEEE-ecCCcEEEeccCC
Q 000177 1511 LLTCITFLGDSSHIAVG-SHTKELKIFDSNS----SSPLESCTSHQAPVTLVQSHLSG-ETQLLLS-SSSQDVHLWNASS 1583 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASG-S~DGtIkIWDl~t----gk~l~tL~gHss~VtsLq~afSp-DG~lLaS-SsDgtVkLWDl~t 1583 (1922)
.+..++|++.+..|+.. ...+.|+.+++.. ......+...-.....| ++.+ .++++++ ...+.|.++++..
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl--avD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL--AVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE--ECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE--EEEeeCCcEEEEeccCCeEEEEecCC
Confidence 45688999876666555 4567899999875 22222222112234556 5553 4555555 4578899999874
Q ss_pred CCCCcceEe-c----cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC-
Q 000177 1584 IAGGPMHSF-E----GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT- 1657 (1922)
Q Consensus 1584 ~~gk~l~tf-~----gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~- 1657 (1922)
..+..+ . ..+.+++.|.+.+|+.+.. +..+.|..+++.... ...+... .....+-++|+|++.
T Consensus 485 ---~~~~~l~~~~~~~P~giavDp~~g~ly~td~-~~~~~I~~~~~dG~~-~~~l~~~------~l~~PnGlavd~~~~~ 553 (699)
T 1n7d_A 485 ---VKRKTLFREQGSKPRAIVVDPVHGFMYWTDW-GTPAKIKKGGLNGVD-IYSLVTE------NIQWPNGITLDLLSGR 553 (699)
T ss_dssp ---CCEEEECCCSSCCCCCEECCSSSSCCEECCC-SSSCCEEBCCSSSCC-CCEESCS------SCSSCCCEEECTTTCC
T ss_pred ---CceEEEEeCCCCCcceEEEccCCCcEEEccc-CCCCeEEEEeCCCCC-eeEEEeC------CCCCccEEEEeccCCE
Confidence 223332 1 2378999996555554411 123678777775322 2222100 011122399998765
Q ss_pred eEeecc
Q 000177 1658 MLLWNG 1663 (1922)
Q Consensus 1658 lLaSgg 1663 (1922)
++++..
T Consensus 554 LY~aD~ 559 (699)
T 1n7d_A 554 LYWVDS 559 (699)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 444444
No 319
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=88.61 E-value=25 Score=41.21 Aligned_cols=109 Identities=6% Similarity=-0.103 Sum_probs=69.9
Q ss_pred CEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEe--cCCcEEEeccCCCCC
Q 000177 1511 LLTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSS--SSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1511 ~Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSS--sDgtVkLWDl~t~~g 1586 (1922)
....+++.+. +.+.++-...+.|.+++++.......+...-.....| ++.|. +.++.+. ..+.|...++. +
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~gi--avdp~~g~ly~td~~~~~~I~r~~~d---G 154 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI--ALDPSSGFMYWTDWGEVPKIERAGMD---G 154 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEE--EEEGGGTEEEEEECSSSCEEEEEETT---S
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEE--EEeCCCCEEEEEecCCCCEEEEEEcC---C
Confidence 3567888874 4455566667899999986543332233334556788 77775 4455553 25678777775 3
Q ss_pred CcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCC
Q 000177 1587 GPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1587 k~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
.....+ ..-+.++|+|++..|+.+ ++..+.|..+|+..
T Consensus 155 ~~~~~~~~~~l~~Pnglavd~~~~~lY~a--D~~~~~I~~~d~dG 197 (318)
T 3sov_A 155 SSRFIIINSEIYWPNGLTLDYEEQKLYWA--DAKLNFIHKSNLDG 197 (318)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEE--ETTTTEEEEEETTS
T ss_pred CCeEEEEECCCCCccEEEEeccCCEEEEE--ECCCCEEEEEcCCC
Confidence 333332 123789999977766665 36678999999874
No 320
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.58 E-value=9.3 Score=47.35 Aligned_cols=100 Identities=6% Similarity=-0.010 Sum_probs=59.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce--eeecc------CCCCeeEEEeeecC----CCcEEEEe-c----
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL--ESCTS------HQAPVTLVQSHLSG----ETQLLLSS-S---- 1572 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l--~tL~g------Hss~VtsLq~afSp----DG~lLaSS-s---- 1572 (1922)
...+.++|.|+|+++++-...+.|++++..+++.. ..+.. .......| +|+| ++.+.++. .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgi--a~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGF--AFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEE--EECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEE--EECCCcCcCCEEEEEEeccccC
Confidence 45789999999997776554457888886555432 22211 24567788 8888 45555553 2
Q ss_pred --------CCcEEEeccCCCCC-----Ccce-Eec---cc--eeEEEcCCCCEEEEee
Q 000177 1573 --------SQDVHLWNASSIAG-----GPMH-SFE---GC--KAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1573 --------DgtVkLWDl~t~~g-----k~l~-tf~---gh--~sVaFSPDG~~LaSgS 1611 (1922)
...|.-|++..... +.+. .+. .| ..+.|.|||.++++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 12455555432111 1111 121 14 6799999999888763
No 321
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=88.23 E-value=43 Score=38.78 Aligned_cols=157 Identities=8% Similarity=0.001 Sum_probs=88.1
Q ss_pred CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCC-cEEEEe-cCCcEEEeccCCCC-CCcce-Ee----ccceeEEEcC
Q 000177 1531 KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGET-QLLLSS-SSQDVHLWNASSIA-GGPMH-SF----EGCKAARFSN 1602 (1922)
Q Consensus 1531 GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG-~lLaSS-sDgtVkLWDl~t~~-gk~l~-tf----~gh~sVaFSP 1602 (1922)
..|+..|+.+.+....+.. -..+..+ .|++.+ .++.+. ..+.|..+++.... +.... .+ .....+++.+
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~--~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-LRNVVAL--DTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEE--EEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CeEEEEECCCcceEehhcC-CCceEEE--EEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 5688899987766555443 3456778 778755 455553 47889999886410 01111 22 2236788987
Q ss_pred CCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-ec----cEEEEcC-CCcceee
Q 000177 1603 SGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL-WN----GILWDRR-NSVPVHR 1676 (1922)
Q Consensus 1603 DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa-Sg----grLWDlr-tgk~I~k 1676 (1922)
.+..|+.+ +...+.|.++|+........+. . .......++++|.+..++ +. ++||-+. .|.....
T Consensus 87 ~~~~ly~~--d~~~~~I~~~~~~g~~~~~~~~-~------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 87 IHSNIYWT--DSVLGTVSVADTKGVKRKTLFR-E------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp TTTEEEEE--ETTTTEEEEEETTSSSEEEEEE-C------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred cCCeEEEE--ECCCCEEEEEeCCCCceEEEEE-C------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence 55544443 2567899999987543322222 0 112233488998665444 33 2555443 3444443
Q ss_pred ec--cCCCceEEEEecCCCEEEEEe
Q 000177 1677 FD--QFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1677 f~--gh~~~VsVaFSPdG~~LASGS 1699 (1922)
+. ....+..++|+|++..|..+.
T Consensus 158 ~~~~~~~~P~gla~d~~~~~lY~~D 182 (316)
T 1ijq_A 158 LVTENIQWPNGITLDLLSGRLYWVD 182 (316)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEE
T ss_pred EEECCCCCceEEEEeccCCEEEEEE
Confidence 32 222334899999877776554
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.08 E-value=8.1 Score=47.88 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=58.3
Q ss_pred CeeEEEeeecCCCcEEEEecCC-cEEEeccCCCCCCcceEecc----------ceeEEEcCC---CCEEEEeecC-----
Q 000177 1553 PVTLVQSHLSGETQLLLSSSSQ-DVHLWNASSIAGGPMHSFEG----------CKAARFSNS---GNLFAALPTE----- 1613 (1922)
Q Consensus 1553 ~VtsLq~afSpDG~lLaSSsDg-tVkLWDl~t~~gk~l~tf~g----------h~sVaFSPD---G~~LaSgS~~----- 1613 (1922)
.-+.| +|.|+|+++++...+ .|++++........+..+.. ...++|+|+ +..|+.+...
T Consensus 28 ~P~~~--a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 28 KPHAL--LWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SEEEE--EECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CceEE--EEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 45678 889999999997764 68888764311112222322 247999995 4444443111
Q ss_pred -CC----CCeEEEEECCCC--ce--eeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1614 -TS----DRGILLYDIQTY--QL--EAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1614 -S~----DgtIrIWDlrTg--k~--i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
.. ...|.-|+...+ +. ...+-.. . .....|....++|.|+|.++++.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~-~-p~~~~H~~~~l~f~pDG~Lyv~~ 161 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG-L-PSSKDHQSGRLVIGPDQKIYYTI 161 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEE-E-CCCSSCCEEEEEECTTSCEEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEc-C-CCCCCCCCCeEeECCCCeEEEEE
Confidence 00 234555555322 11 1111100 0 01235777779999999988863
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=87.73 E-value=1.1e+02 Score=42.67 Aligned_cols=72 Identities=13% Similarity=0.134 Sum_probs=45.9
Q ss_pred CCEEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCCceeeec-cCCCCeeEEEe-eecCCCcEEEEe-cCCcEEEe
Q 000177 1510 ALLTCITFLGD------SSHIAVGSH-TKELKIFDSNSSSPLESCT-SHQAPVTLVQS-HLSGETQLLLSS-SSQDVHLW 1579 (1922)
Q Consensus 1510 ~~Vt~LaFSPD------G~lLASGS~-DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~-afSpDG~lLaSS-sDgtVkLW 1579 (1922)
..|.|+++.|. +++++.|.. |++|+|+++.+.+.+.... +-.....+|.. .+ ....+|..| .||.+.-+
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEE
Confidence 57999999863 469999997 9999999998766554332 11224445533 23 233455555 58876555
Q ss_pred ccC
Q 000177 1580 NAS 1582 (1922)
Q Consensus 1580 Dl~ 1582 (1922)
.+.
T Consensus 633 ~~d 635 (1158)
T 3ei3_A 633 GLN 635 (1158)
T ss_dssp EEC
T ss_pred EEc
Confidence 443
No 324
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.44 E-value=19 Score=42.15 Aligned_cols=161 Identities=9% Similarity=0.030 Sum_probs=90.2
Q ss_pred EEEEcCCCCEEEEEeCC--------------CcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec---CCcE
Q 000177 1514 CITFLGDSSHIAVGSHT--------------KELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS---SQDV 1576 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~D--------------GtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs---DgtV 1576 (1922)
+--|+++|.+|+-.... ..|+..+++.++... +. ..... .|+++++.|+-+. ++.-
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~--~~~~~----~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LD--PDPCI----YASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EE--CSCEE----EEEEETTEEEEEEESSSSCE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-ee--cCCcc----EEEEeCCEEEEEeecCCCCc
Confidence 34467889988777643 467777776665332 32 12222 3456777776543 4444
Q ss_pred EEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1577 HLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1577 kLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
.||-+.. .+.....+..+....|+|+++.|+-.+ .....|...++..+.....+. + ... ..++|++
T Consensus 130 ~Iy~~~~-dGs~~~~lt~~~~~~~~~~g~~iy~t~--~g~~~Iy~~~l~g~~~~~l~~---------~-~~~-~~~~P~g 195 (302)
T 3s25_A 130 SLYRIRI-DGEEKKKIKNHYLFTCNTSDRYFYYNN--PKNGQLYRYDTASQSEALFYD---------C-NCY-KPVVLDD 195 (302)
T ss_dssp EEEEEET-TSCCCEEEESSCCCCSEEETTEEEEEC--TTTCCEEEEETTTTEEEEEEC---------S-CEE-EEEEEET
T ss_pred eEEEEEC-CCCCeEEEeCCCceEeeEECCEEEEEe--CCCceEEEEECCCCCEEEEeC---------C-Ccc-ceeeecC
Confidence 4554433 133445554444467888898888762 245778888887665443332 1 112 2356999
Q ss_pred CeEeecc-----EEEEcC-CCcceeeeccCCCceEEEEecCCCEEEEE
Q 000177 1657 TMLLWNG-----ILWDRR-NSVPVHRFDQFTDHGGGGFHPAGNEVIIN 1698 (1922)
Q Consensus 1657 ~lLaSgg-----rLWDlr-tgk~I~kf~gh~~~VsVaFSPdG~~LASG 1698 (1922)
.+|+... +|+-+. .|.....+.. .. ...|+|+|.+|.-+
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~--~~-~~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNPNPVVLTE--AN-IEHYNVYGSLIFYQ 240 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSCCCEECSC--SC-EEEEEEETTEEEEE
T ss_pred CEEEEEEcCCCcEEEEEECCCCCeEEEeC--CC-cceEEECCCEEEEE
Confidence 8887432 555544 2323333321 12 24588899888744
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=87.21 E-value=36 Score=41.04 Aligned_cols=175 Identities=10% Similarity=0.122 Sum_probs=92.9
Q ss_pred EEEEEcCCCCEEEEE------------eCCCcEEEEECCCC--Cce-eeecc-----CCCCeeEEEeeecCCCc--EEEE
Q 000177 1513 TCITFLGDSSHIAVG------------SHTKELKIFDSNSS--SPL-ESCTS-----HQAPVTLVQSHLSGETQ--LLLS 1570 (1922)
Q Consensus 1513 t~LaFSPDG~lLASG------------S~DGtIkIWDl~tg--k~l-~tL~g-----Hss~VtsLq~afSpDG~--lLaS 1570 (1922)
-.+...|+|..++++ ..+|.|.+||..+. +.. ..+.+ ..-....|......++. ++++
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 356678877554444 27899999998742 221 12222 12345566322222453 5555
Q ss_pred e-c--CCcEEEeccCCCCCC--cceEecc-----ceeEEEcCCCCEEEEeecC--------------CCCCeEEEEECCC
Q 000177 1571 S-S--SQDVHLWNASSIAGG--PMHSFEG-----CKAARFSNSGNLFAALPTE--------------TSDRGILLYDIQT 1626 (1922)
Q Consensus 1571 S-s--DgtVkLWDl~t~~gk--~l~tf~g-----h~sVaFSPDG~~LaSgS~~--------------S~DgtIrIWDlrT 1626 (1922)
. . +.+|.||++...... .+.++.+ .+.+.+.++|.++++...- ...+.|.-||.
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-- 210 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-- 210 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence 2 2 668889888652111 1233333 3789999999987775210 01244555554
Q ss_pred CceeeeeccccccccCCC-CcceEEEEcCCCCeEeecc------EEEEcC-CCcc--eeeeccCCCce-EEEEec-CCCE
Q 000177 1627 YQLEAKLSDTSVNLTGRG-HAYSQIHFSPSDTMLLWNG------ILWDRR-NSVP--VHRFDQFTDHG-GGGFHP-AGNE 1694 (1922)
Q Consensus 1627 gk~i~tL~d~s~~~~~~g-h~~~vVaFSPdG~lLaSgg------rLWDlr-tgk~--I~kf~gh~~~V-sVaFSP-dG~~ 1694 (1922)
++...... + ...+-++|+||++.+..+. ..||+. .++. ...|. ..... .+++.+ +|++
T Consensus 211 ~~~~~~~~---------~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 211 NDVRVVAE---------GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDL 280 (355)
T ss_dssp TCCEEEEE---------EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCE
T ss_pred CeEEEeec---------CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcE
Confidence 32221111 1 2234499999998766333 566665 2332 23442 22233 788899 5987
Q ss_pred EEEEe
Q 000177 1695 VIINS 1699 (1922)
Q Consensus 1695 LASGS 1699 (1922)
.+++.
T Consensus 281 wva~~ 285 (355)
T 3sre_A 281 WVGCH 285 (355)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66553
No 326
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.38 E-value=39 Score=43.36 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=57.4
Q ss_pred EEEEecCCCEEEEEeE------EEecCCC------eE-------EEEEc-CCCceeEEEccCCCEEEEEEccCchhhhhh
Q 000177 1685 GGGFHPAGNEVIINSE------VWDLRKF------RL-------LRSVP-SLDQTTITFNARGDVIYAILRRNLEDVMSA 1744 (1922)
Q Consensus 1685 sVaFSPdG~~LASGSe------IWDLrTg------kl-------L~tl~-gH~~~sVaFSPdG~~LaSgs~~d~~dv~s~ 1744 (1922)
.+.++|||++++.+++ |+|+++. ++ +..+. |......+|.++| ..|+.+.-++..+.|.
T Consensus 327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEEEEE
T ss_pred ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEEEEe
Confidence 7899999999999993 7777631 11 22222 3334789999999 7888876554444333
Q ss_pred hccc--ccccCCcceEEEEecCCCceeeeeccCCceEEEEE------cCCCceEEEEe
Q 000177 1745 VHTR--RVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFAT------ERTDSFVGLIT 1794 (1922)
Q Consensus 1745 lh~r--r~ksp~~ssFrt~Da~dys~IaTidvkr~I~dLa~------SPdds~LAVVe 1794 (1922)
+... ..+.. .. ..-+..+++...+-.+.. .++|+++.+..
T Consensus 406 i~~a~~~~~g~--~~--------~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 406 MEEAVRAYKGE--KV--------NYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp HHHHHHHHTTC--CC--------CCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred ccHHHHHhcCc--cC--------CeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 2111 00100 00 112344555666666655 56777776664
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=86.24 E-value=21 Score=40.50 Aligned_cols=139 Identities=13% Similarity=0.134 Sum_probs=70.6
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEe-cC------CcEEEeccCCCCC
Q 000177 1520 DSSHIAVGSHT----KELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSS-SS------QDVHLWNASSIAG 1586 (1922)
Q Consensus 1520 DG~lLASGS~D----GtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSS-sD------gtVkLWDl~t~~g 1586 (1922)
++.+++.|+.+ ..+.+||..+++.... +......-..+ .+ ++++++.| .+ ..+.+||..+...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC--AA--EGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE--EE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE--EE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 56777888865 6788999887654322 21111111122 22 66776664 23 3588888876211
Q ss_pred CcceEe----ccceeEEEcCCCCEEEEeecCCC------CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1587 GPMHSF----EGCKAARFSNSGNLFAALPTETS------DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1587 k~l~tf----~gh~sVaFSPDG~~LaSgS~~S~------DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
..+..+ ..|..+.+ +++.++.|+.... -..+.+||+.+.+-.. +.+ +.....+|. ++. -++
T Consensus 131 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~--~p~~r~~~~---~~~-~~~ 201 (306)
T 3ii7_A 131 HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCP--MIEARKNHG---LVF-VKD 201 (306)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECC--CSSCCBSCE---EEE-ETT
T ss_pred EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCC--ccchhhcce---EEE-ECC
Confidence 111111 11223332 5677777643222 3568999998865432 221 111111222 222 266
Q ss_pred CeEeecc----------EEEEcCCC
Q 000177 1657 TMLLWNG----------ILWDRRNS 1671 (1922)
Q Consensus 1657 ~lLaSgg----------rLWDlrtg 1671 (1922)
++++.+| .+||+.+.
T Consensus 202 ~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 202 KIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EEEEECCEETTEEBCCEEEEETTTT
T ss_pred EEEEEeCCCCCCCCceEEEeeCCCC
Confidence 7777766 57777765
No 328
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=85.48 E-value=5 Score=45.79 Aligned_cols=150 Identities=10% Similarity=0.065 Sum_probs=80.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCce------eeec--cCCCCeeEEEeeecCCCcEEEEecCCcEEEecc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPL------ESCT--SHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNA 1581 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l------~tL~--gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl 1581 (1922)
..+++++|+|+|.+-++ .+|.+.-.+..+.... ..+- +.+. -..+ .|.++|.+.++ .|+.|.-|+-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~--~fD~~G~LYav-~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFL--FFDPNGYLYAV-SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEE--EECTTSCEEEE-ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEE--EECCCCCEEEe-CCCEEEEeCC
Confidence 34779999999986666 7777666665443221 1110 1111 2566 78999999988 7799887776
Q ss_pred CCCCCC-cc---eE-----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1582 SSIAGG-PM---HS-----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1582 ~t~~gk-~l---~t-----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
.+.... .+ .. +.....+.|.|+|.+.+.. |+.+.-+..-++....-+..........-|....+.|
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-----dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-----GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-----TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-----CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 431111 11 11 1234789999999977663 4554322222111111010000000011123333668
Q ss_pred cCCCCeEeecc-EEEEcCC
Q 000177 1653 SPSDTMLLWNG-ILWDRRN 1670 (1922)
Q Consensus 1653 SPdG~lLaSgg-rLWDlrt 1670 (1922)
.|++.+.+... ++|-...
T Consensus 190 ~~~G~l~~v~~g~~Y~~~~ 208 (236)
T 1tl2_A 190 SSVGTLFGVQGGKFYEDYP 208 (236)
T ss_dssp CTTSCEEEEETTEEEEESC
T ss_pred CCCCcEEEEeCCeEEecCC
Confidence 88887766444 6666543
No 329
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=83.50 E-value=1.1e+02 Score=39.28 Aligned_cols=166 Identities=6% Similarity=-0.088 Sum_probs=93.5
Q ss_pred CCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEE-ecCCcEEEeccCCCCC
Q 000177 1510 ALLTCITFLGDSSHIA-VGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLS-SSSQDVHLWNASSIAG 1586 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLA-SGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaS-SsDgtVkLWDl~t~~g 1586 (1922)
..+..++|++.+..|+ +-..++.|..++++.......+..-......| ++... ++++.+ ...+.|.+.++..
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl--AvD~~~~~LY~tD~~~~~I~v~~~dG--- 111 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM--AVDWLGKNLYWADTGTNRIEVSKLDG--- 111 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE--EEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE--EEEeCCCEEEEEECCCCEEEEEecCC---
Confidence 3578999999666554 55567899999987554443343222446677 55544 445555 3477899988864
Q ss_pred CcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe-
Q 000177 1587 GPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL- 1660 (1922)
Q Consensus 1587 k~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa- 1660 (1922)
.....+ ...+.+++.|...+|+.+.. +..+.|...++........+. .....+-++++++++.|.
T Consensus 112 ~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~-g~~~~I~r~~~dG~~~~~l~~--------~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 112 QHRQVLVWKDLDSPRALALDPAEGFMYWTEW-GGKPKIDRAAMDGSERTTLVP--------NVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp TTCEEEECSSCCCEEEEEEETTTTEEEEEEC-SSSCEEEEEETTSCSCEEEEC--------SCSSEEEEEEETTTTEEEE
T ss_pred CcEEEEEeCCCCCcccEEEccCCCeEEEeCC-CCCCEEEEEeCCCCceEEEEC--------CCCCcceEEEccccCEEEE
Confidence 222222 22478999995444544422 235678888876443322222 112233499999766555
Q ss_pred ecc---E--EEEcCCCcceeeec-cCCCceEEEEec
Q 000177 1661 WNG---I--LWDRRNSVPVHRFD-QFTDHGGGGFHP 1690 (1922)
Q Consensus 1661 Sgg---r--LWDlrtgk~I~kf~-gh~~~VsVaFSP 1690 (1922)
+.. + .+|+..... ..+. ....+..+++..
T Consensus 183 aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~ 217 (628)
T 4a0p_A 183 TDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ 217 (628)
T ss_dssp EETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET
T ss_pred EECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC
Confidence 433 4 445443322 2332 233344666654
No 330
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=83.18 E-value=1.7 Score=46.75 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=82.0
Q ss_pred HHHHHHHhhhch-hHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHhccccchh
Q 000177 541 EKYCIQCLETLG-EYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lG-EYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV~~gGlq~ 618 (1922)
+...+.+|.-|. ...+.-..+++.+++..++.+|.. .+..+...|++.|+.|..|. .....+++.|+++.
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 142 (210)
T 4db6_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142 (210)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC--------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH
Confidence 344566666554 334445567788999998888853 23456778999999998654 44457889999999
Q ss_pred hhccCCCcc--cccccceeeehhcch-hhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhh
Q 000177 619 LLAVPRNNQ--TFFGLSSCLFTIGSL-QGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFA 684 (1922)
Q Consensus 619 LL~vPR~s~--a~tgvS~Clyylay~-~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~ 684 (1922)
|+++=+.+. .-.....||..|+.. +...+.++.. ..|..-+.||..++...|.+|+..+.
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~------g~i~~L~~ll~~~~~~v~~~a~~aL~ 205 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA------GALEKLEQLQSHENEKIQKEAQEALE 205 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT------THHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC------CCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 998766432 112223344444443 3333333222 24566667788888888888876654
No 331
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=82.08 E-value=5 Score=52.48 Aligned_cols=109 Identities=6% Similarity=-0.069 Sum_probs=66.7
Q ss_pred EEEEEEcCC-CCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCc-EEEEe-c-CCcEEEeccCCCCCC
Q 000177 1512 LTCITFLGD-SSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQ-LLLSS-S-SQDVHLWNASSIAGG 1587 (1922)
Q Consensus 1512 Vt~LaFSPD-G~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~-lLaSS-s-DgtVkLWDl~t~~gk 1587 (1922)
...+++.+. ++++++-...+.|.++++........+.........| +++|.+. ++++. . .+.|.++++.. .
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~gi--avDp~~g~ly~td~~~~~~I~~~~~dG---~ 529 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAI--VVDPVHGFMYWTDWGTPAKIKKGGLNG---V 529 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCE--ECCSSSSCCEECCCSSSCCEEBCCSSS---C
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceE--EEccCCCcEEEcccCCCCeEEEEeCCC---C
Confidence 456788754 4455555567889999986544333333222345677 7787544 44443 2 36788888763 2
Q ss_pred cceE-----eccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1588 PMHS-----FEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1588 ~l~t-----f~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
.... +...+.++|+|++.+|+.+ +...+.|..+|+...
T Consensus 530 ~~~~l~~~~l~~PnGlavd~~~~~LY~a--D~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 530 DIYSLVTENIQWPNGITLDLLSGRLYWV--DSKLHSISSIDVNGG 572 (699)
T ss_dssp CCCEESCSSCSSCCCEEECTTTCCEEEE--ETTTTEEEEECSSSS
T ss_pred CeeEEEeCCCCCccEEEEeccCCEEEEE--ecCCCeEEEEccCCC
Confidence 2222 2224789999976655554 266788999998753
No 332
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=81.00 E-value=43 Score=37.79 Aligned_cols=140 Identities=10% Similarity=0.117 Sum_probs=71.3
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCC---ceee--eccCCCCeeEEEeeecCCCcEEEEec------CCcEEEeccCC
Q 000177 1520 DSSHIAVGSHT-----KELKIFDSNSSS---PLES--CTSHQAPVTLVQSHLSGETQLLLSSS------SQDVHLWNASS 1583 (1922)
Q Consensus 1520 DG~lLASGS~D-----GtIkIWDl~tgk---~l~t--L~gHss~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~t 1583 (1922)
++.+++.|+.+ ..+.+||..+++ .... +......-..+ .+ ++++++.|. ...+.+||..+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~--~~--~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT--TL--GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE--EE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE--EE--CCEEEEEcccCCCcccceEEEEcCCC
Confidence 56777888865 468999998776 3322 11111111222 22 667777642 23588888876
Q ss_pred CCCCcceEec----cceeEEEcCCCCEEEEeecCCC--CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC
Q 000177 1584 IAGGPMHSFE----GCKAARFSNSGNLFAALPTETS--DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT 1657 (1922)
Q Consensus 1584 ~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~--DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~ 1657 (1922)
.....+..+. .|..+.+ +++.++.|+..+. -..+.+||+.+.+-.. +. .......+|. .+. -+++
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~--~~p~~r~~~~--~~~--~~~~ 208 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN-VT--PMATKRSGAG--VAL--LNDH 208 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-EC--CCSSCCBSCE--EEE--ETTE
T ss_pred CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe-CC--CCCcccccce--EEE--ECCE
Confidence 2111111111 1223333 5677777633221 2568999998765433 22 1111111222 122 2567
Q ss_pred eEeecc----------EEEEcCCCc
Q 000177 1658 MLLWNG----------ILWDRRNSV 1672 (1922)
Q Consensus 1658 lLaSgg----------rLWDlrtgk 1672 (1922)
+++.+| .+||+.+.+
T Consensus 209 i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 209 IYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEeCCCCCcccceEEEEeCCCCc
Confidence 777665 577877654
No 333
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=80.21 E-value=60 Score=36.59 Aligned_cols=176 Identities=13% Similarity=0.142 Sum_probs=83.2
Q ss_pred CCCEEEEEe-CC-----CcEEEEECCCCCcee--eeccCCCCeeEEEeeecCCCcEEEEec-C-----CcEEEeccCCCC
Q 000177 1520 DSSHIAVGS-HT-----KELKIFDSNSSSPLE--SCTSHQAPVTLVQSHLSGETQLLLSSS-S-----QDVHLWNASSIA 1585 (1922)
Q Consensus 1520 DG~lLASGS-~D-----GtIkIWDl~tgk~l~--tL~gHss~VtsLq~afSpDG~lLaSSs-D-----gtVkLWDl~t~~ 1585 (1922)
++.+++.|+ .+ ..+.+||+.+++... .+.........+ . -++++++.|. + ..+.+||..+..
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV--S--LHDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEE--E--ETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEE--E--ECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 344555555 22 368888887665322 111111111122 2 2566666643 3 468899987722
Q ss_pred ---CCcceEec----cceeEEEcCCCCEEEEeecCCC--CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1586 ---GGPMHSFE----GCKAARFSNSGNLFAALPTETS--DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1586 ---gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~--DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
.+.+..+. .|..+.+ +++.++.|+..+. -..+.+||+.+.+-.. +.+ ......+|.. +. -++
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~--~p~~r~~~~~--~~--~~~ 160 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM-LGD--MQTAREGAGL--VV--ASG 160 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE-EEE--CSSCCBSCEE--EE--ETT
T ss_pred CCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE-CCC--CCCCcccceE--EE--ECC
Confidence 11111111 1223333 5677777633221 2468999998765433 221 1111112221 22 267
Q ss_pred CeEeecc----------EEEEcCCCcc--eeeeccCCCceEEEEecCCCEEEEEe----------EEEecCCCeE
Q 000177 1657 TMLLWNG----------ILWDRRNSVP--VHRFDQFTDHGGGGFHPAGNEVIINS----------EVWDLRKFRL 1709 (1922)
Q Consensus 1657 ~lLaSgg----------rLWDlrtgk~--I~kf~gh~~~VsVaFSPdG~~LASGS----------eIWDLrTgkl 1709 (1922)
++++.+| .+||+.+.+- +..+.......+++. -+++.++.|+ .+||+.+.+-
T Consensus 161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 7777665 5778776532 211111111112222 2566667665 2678876543
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=79.47 E-value=17 Score=45.22 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=67.3
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCceeeeccC----CCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCC---C-----
Q 000177 1519 GDSSHIAVGSHTKELKIFDSNSSSPLESCTSH----QAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIA---G----- 1586 (1922)
Q Consensus 1519 PDG~lLASGS~DGtIkIWDl~tgk~l~tL~gH----ss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~---g----- 1586 (1922)
.+|..|+..- ++.||.-++......+.+.-- -..|..+ ..+|+|.+|+...+.+|.|-.+.... .
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~ql--vlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHV--ISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEE--EECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEE--EECCCCCEEEEecCCeEEEEEecCccccCcccccc
Confidence 3455555443 366777777654444444322 1257778 88999999999999999998876311 0
Q ss_pred Ccc--eEec----------cceeEEEcCC---CCEEEEeecCCCCCeEEEEECCC
Q 000177 1587 GPM--HSFE----------GCKAARFSNS---GNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1587 k~l--~tf~----------gh~sVaFSPD---G~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
..+ +++. .+..+.|||- +..|++- ..|++|++||+..
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL---tsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL---KEDDTITMFDILN 158 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE---ETTSCEEEEETTC
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE---ecCCEEEEEEccc
Confidence 001 1221 1477999994 5677777 7899999999986
No 335
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=79.44 E-value=1.5e+02 Score=38.04 Aligned_cols=147 Identities=7% Similarity=-0.021 Sum_probs=82.6
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCCc-eeeeccCCCCeeEEEeeecCC-CcEEEEe-cCCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSSHIAVGS-HTKELKIFDSNSSSP-LESCTSHQAPVTLVQSHLSGE-TQLLLSS-SSQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS-~DGtIkIWDl~tgk~-l~tL~gHss~VtsLq~afSpD-G~lLaSS-sDgtVkLWDl~t~~ 1585 (1922)
.....++|++.+..|+... ..+.|..++++.... ...+..--.....| ++... ++++++. ..+.|.+.++..
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl--AvD~~~~~ly~~d~~~~~I~v~~~dG-- 115 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL--ACDWLGEKLYWTDSETNRIEVSNLDG-- 115 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE--EEETTTTEEEEEETTTTEEEEEETTS--
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE--EEEecCCEEEEEeCCCCEEEEEECCC--
Confidence 4578999999666665544 567899999875532 22333323567888 67764 4455553 478899999874
Q ss_pred CCcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1586 GGPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1586 gk~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
.....+ ...+.+++.|.+.+|+.+.. +..+.|...++........+. . .....+-+++++++..|.
T Consensus 116 -~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~-g~~~~I~r~~~dG~~~~~l~~-~------~~~~P~Glald~~~~~LY 186 (619)
T 3s94_A 116 -SLRKVLFWQELDQPRAIALDPSSGFMYWTDW-GEVPKIERAGMDGSSRFIIIN-S------EIYWPNGLTLDYEEQKLY 186 (619)
T ss_dssp -CSCEEEECSSCSCCCCEEEETTTTEEEEEEC-SSSCEEEEEETTSCSCEEEEC-S------SCSSEEEEEEETTTTEEE
T ss_pred -CCEEEEEeCCCCCCceEEEecCCCeEEEecc-CCCCEEEEEECCCCceEEEEe-C------CCCCCcEEEEEccCCEEE
Confidence 333222 22478999997555544422 224567777766333222221 0 112233499998765554
Q ss_pred -ecc---EEEEcC
Q 000177 1661 -WNG---ILWDRR 1669 (1922)
Q Consensus 1661 -Sgg---rLWDlr 1669 (1922)
+.. +||-+.
T Consensus 187 ~aD~~~~~I~~~~ 199 (619)
T 3s94_A 187 WADAKLNFIHKSN 199 (619)
T ss_dssp EEETTTCCEEEES
T ss_pred EEeCCCCeEEEec
Confidence 443 454443
No 336
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=78.80 E-value=4.7 Score=48.25 Aligned_cols=153 Identities=11% Similarity=0.043 Sum_probs=86.4
Q ss_pred HHHHHhhhchhH-HHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhh-hhhhHHHHhccccchhhh
Q 000177 543 YCIQCLETLGEY-VEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAA-HRKFAALFVDRGGMQKLL 620 (1922)
Q Consensus 543 ~~l~~L~~lGEY-qE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~-HkKfA~eFV~~gGlq~LL 620 (1922)
.++.+|.-+... .+....++..+++..++.+|.. .+..+-..|++.|+.|.. .......+++.|++..|+
T Consensus 253 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 324 (450)
T 2jdq_A 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--------PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALI 324 (450)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 344455444432 1222345567788887887753 122455689999999986 445666788899999887
Q ss_pred ccCCCccccc--ccceeeehhcch--hhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcch-------
Q 000177 621 AVPRNNQTFF--GLSSCLFTIGSL--QGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVF------- 689 (1922)
Q Consensus 621 ~vPR~s~a~t--gvS~Clyylay~--~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~F------- 689 (1922)
.+=+....-+ ....+|.-|+.. ++....++ -..++..-+.+|.+++..-|.+|...+..-+..
T Consensus 325 ~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~------~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 398 (450)
T 2jdq_A 325 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLV------ELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR 398 (450)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHH------HHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHH------HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc
Confidence 6533221100 111122222221 12222221 013566667778888777777776655433322
Q ss_pred -----hHHHHHhhhcccHHHHHHHH
Q 000177 690 -----RAIIDAFDAQDGLQKLLGLL 709 (1922)
Q Consensus 690 -----r~il~~FD~~dGLrkL~N~i 709 (1922)
..+.+.|...+|+.+|.+++
T Consensus 399 ~~~~~~~~~~~l~~~g~~~~l~~l~ 423 (450)
T 2jdq_A 399 NGTGINPYCALIEEAYGLDKIEFLQ 423 (450)
T ss_dssp SCSCCCHHHHHHHHHHCHHHHHHHH
T ss_pred cccchhHHHHHHHHcCcHHHHHHHH
Confidence 23567788888999987765
No 337
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=78.64 E-value=68 Score=38.77 Aligned_cols=141 Identities=11% Similarity=0.197 Sum_probs=90.4
Q ss_pred CCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
..+|.|.|+... ..+.+.--..-+.-.||..+.++.- ...++.|||+++.+.++.+. ....+.--.|
T Consensus 48 ~~~VvIiDl~n~-~~~~Rrpi~AdsAIMnP~~~ViALr----ag~~LQiFnletK~klks~~--------~~e~VvfWkW 114 (365)
T 2xzh_A 48 QAQVVIIDMNDP-SNPIRRPISADSAIMNPASKVIALK----AGKTLQIFNIEMKSKMKAHT--------MTDDVTFWKW 114 (365)
T ss_dssp EEEEEEEETTST-TSCEEEECCCSEEEECSSSSEEEEE----ETTEEEEEETTTTEEEEEEE--------CSSCEEEEEE
T ss_pred CCEEEEEECCCC-CCccccccccceeeeCCCccEEEEe----cCCeEEEechHHhhhhccee--------cCCccEEEEe
Confidence 346888999873 2333333334566689998877774 25789999999999888775 1112222445
Q ss_pred cCCCCeEe-ecc--EEEEcCC-CcceeeeccCCC-----ceEEEEecCCCEEEEEe------------EEEecCCCeEEE
Q 000177 1653 SPSDTMLL-WNG--ILWDRRN-SVPVHRFDQFTD-----HGGGGFHPAGNEVIINS------------EVWDLRKFRLLR 1711 (1922)
Q Consensus 1653 SPdG~lLa-Sgg--rLWDlrt-gk~I~kf~gh~~-----~VsVaFSPdG~~LASGS------------eIWDLrTgklL~ 1711 (1922)
-....+-+ |.. +-|++.. ..|++.|+.|.. .++-..+++.+|++..+ .+|..+ .+.-+
T Consensus 115 is~~~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ 193 (365)
T 2xzh_A 115 ISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQ 193 (365)
T ss_dssp CSSSEEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TTEEE
T ss_pred cCCCeEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec-ccccc
Confidence 54444433 444 8899874 468888887643 23667788899887776 267775 34556
Q ss_pred EEcCCCceeEEEccCC
Q 000177 1712 SVPSLDQTTITFNARG 1727 (1922)
Q Consensus 1712 tl~gH~~~sVaFSPdG 1727 (1922)
.+.||..+-..|-.+|
T Consensus 194 ~ieGhaa~F~~~~~~g 209 (365)
T 2xzh_A 194 PIEGHAASFAQFKMEG 209 (365)
T ss_dssp EECCSEEEEEEECCTT
T ss_pred eeeeeeeeeEEEecCC
Confidence 6777776544554443
No 338
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=78.27 E-value=1.8 Score=42.60 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=31.8
Q ss_pred ccChHHHHHHHHHHHHhcCchHHHHHHHHHcCCC
Q 000177 1165 SYHSRELLLLIHEHLQASGLVTTAAQLLKEAQLT 1198 (1922)
Q Consensus 1165 ~y~e~ELL~LI~~HL~~~GL~~TA~~L~kEA~L~ 1198 (1922)
+....|+-.||+.+|+.+|...||-+|.+|+++.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 5678999999999999999999999999999994
No 339
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=77.30 E-value=0.49 Score=60.95 Aligned_cols=6 Identities=0% Similarity=0.506 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000177 1425 LVVQYL 1430 (1922)
Q Consensus 1425 IVtqyL 1430 (1922)
+++.|+
T Consensus 73 ~~~~~V 78 (649)
T 3tj1_A 73 MYSRFV 78 (649)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 340
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=75.63 E-value=86 Score=39.28 Aligned_cols=141 Identities=11% Similarity=0.204 Sum_probs=90.1
Q ss_pred CCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
..+|.|.|+..+ ..+.+.--..-+.-.||..+.|+.- ...++.|||+.+.+.++.+. ....+.--.|
T Consensus 47 ~~~vvIiDl~~~-~~~~rrpi~AdsAIMnP~~~iiALr----ag~~lQiFnle~K~klks~~--------~~e~VvfWkW 113 (494)
T 1bpo_A 47 QAQVVIIDMNDP-SNPIRRPISADSAIMNPASKVIALK----AGKTLQIFNIEMKSKMKAHT--------MTDDVTFWKW 113 (494)
T ss_dssp CCEEEEEETTST-TSCEEEECCCSEEEECSSSSCEEEE----ETTEEEEEETTTTEEEEEEE--------CSSCCCEEEE
T ss_pred CCeEEEEECCCC-CcceecccccceeeeCCCCcEEEEe----cCCeEEEEchHHhhhhccee--------cCCCceEEEe
Confidence 447888999873 2333333334567789998877774 25889999999998888765 1112222344
Q ss_pred cCCCCe-Eeecc--EEEEcCC-CcceeeeccCCC-----ceEEEEecCCCEEEEEe------------EEEecCCCeEEE
Q 000177 1653 SPSDTM-LLWNG--ILWDRRN-SVPVHRFDQFTD-----HGGGGFHPAGNEVIINS------------EVWDLRKFRLLR 1711 (1922)
Q Consensus 1653 SPdG~l-LaSgg--rLWDlrt-gk~I~kf~gh~~-----~VsVaFSPdG~~LASGS------------eIWDLrTgklL~ 1711 (1922)
-.+..+ |+|.. +-|++.. ..|++.|+.|.. .+.-..+++++|++..+ .+|... .+.-+
T Consensus 114 is~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~sQ 192 (494)
T 1bpo_A 114 ISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKVSQ 192 (494)
T ss_dssp EETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCCEE
T ss_pred cCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccccc
Confidence 444443 33444 8999863 468888887643 23667788999887666 267775 34456
Q ss_pred EEcCCCceeEEEccCC
Q 000177 1712 SVPSLDQTTITFNARG 1727 (1922)
Q Consensus 1712 tl~gH~~~sVaFSPdG 1727 (1922)
.+.||..+-..|-.+|
T Consensus 193 ~ieGhaa~F~~~~~~g 208 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEG 208 (494)
T ss_dssp EECCSEEEEEEEECTT
T ss_pred hheeeeeeeEEEecCC
Confidence 6777776544554444
No 341
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=75.19 E-value=0.61 Score=60.13 Aligned_cols=8 Identities=25% Similarity=0.252 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000177 1423 DSLVVQYL 1430 (1922)
Q Consensus 1423 dsIVtqyL 1430 (1922)
..-|+++|
T Consensus 75 ~~~V~~AL 82 (649)
T 3tj1_A 75 SRFVKSAL 82 (649)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 342
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=75.15 E-value=6.2 Score=46.30 Aligned_cols=139 Identities=13% Similarity=0.093 Sum_probs=88.7
Q ss_pred HHHHhhhch-hHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhH-HHHhccccchhhhc
Q 000177 544 CIQCLETLG-EYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFA-ALFVDRGGMQKLLA 621 (1922)
Q Consensus 544 ~l~~L~~lG-EYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA-~eFV~~gGlq~LL~ 621 (1922)
+|..+..-. ++|+ .++..+++..++.||.... ...+.-.|++.|++|..|.+-. ..|++.||++.|+.
T Consensus 105 ~Lg~ia~~n~~~~~---~vv~~g~l~~Ll~LL~~~~-------~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~ 174 (296)
T 1xqr_A 105 LIGTCSQNVAAIQE---QVLGLGALRKLLRLLDRDA-------CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMR 174 (296)
T ss_dssp HHHHHHTTCHHHHH---HHHHTTHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhCCHHHHH---HHHHCCCHHHHHHHHccCC-------CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHH
Confidence 444443322 4666 4668899999899886311 1234568999999999887664 47999999999887
Q ss_pred cCCCcc--cccccceeeehhcch-hhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhh-cchhHHHHHhh
Q 000177 622 VPRNNQ--TFFGLSSCLFTIGSL-QGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAA-FVFRAIIDAFD 697 (1922)
Q Consensus 622 vPR~s~--a~tgvS~Clyylay~-~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~s-f~Fr~il~~FD 697 (1922)
+=+... .-.-...+|.||+.. .+..+.|... .+|..-..||.+++..-+.+|+..++.- -.++..+..|.
T Consensus 175 lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~------g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~ 248 (296)
T 1xqr_A 175 AMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM------GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR 248 (296)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT------THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc------CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh
Confidence 654321 111233455555443 3333444322 2556666789999999999998887543 33466667775
Q ss_pred h
Q 000177 698 A 698 (1922)
Q Consensus 698 ~ 698 (1922)
+
T Consensus 249 ~ 249 (296)
T 1xqr_A 249 E 249 (296)
T ss_dssp C
T ss_pred c
Confidence 5
No 343
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=74.55 E-value=16 Score=45.30 Aligned_cols=141 Identities=15% Similarity=0.173 Sum_probs=85.7
Q ss_pred HHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCCccccc--cc
Q 000177 556 EVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRNNQTFF--GL 632 (1922)
Q Consensus 556 E~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~s~a~t--gv 632 (1922)
+....++..+.+..++.+|.. .+..+...+++.|+.|..+ ......+++.|++..|+.+=+.+...+ ..
T Consensus 290 ~~~~~~~~~~~v~~Lv~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A 361 (530)
T 1wa5_B 290 EAIQAVIDVRIPKRLVELLSH--------ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHCC--------CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHH
Confidence 334456677888888887753 1234566788999998865 556677889999998887655442111 11
Q ss_pred ceeeehhcc-hhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcch-h---HHHHHhhhcccHHHHHH
Q 000177 633 SSCLFTIGS-LQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFVF-R---AIIDAFDAQDGLQKLLG 707 (1922)
Q Consensus 633 S~Clyylay-~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~F-r---~il~~FD~~dGLrkL~N 707 (1922)
..+|-.|+. +.+.+..++. ..+|..-+.+|..++..-|..|+.-++..... . .....+-..+++..|++
T Consensus 362 ~~aL~~l~~~~~~~~~~~~~------~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ 435 (530)
T 1wa5_B 362 CWTISNITAGNTEQIQAVID------ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD 435 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHH------TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH------CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHH
Confidence 122223332 2222322221 13455666778888888888887777654432 1 34455556778888887
Q ss_pred HHh
Q 000177 708 LLN 710 (1922)
Q Consensus 708 ~i~ 710 (1922)
++.
T Consensus 436 ll~ 438 (530)
T 1wa5_B 436 LLE 438 (530)
T ss_dssp HTT
T ss_pred HHh
Confidence 763
No 344
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=73.87 E-value=8.1 Score=51.48 Aligned_cols=165 Identities=14% Similarity=0.132 Sum_probs=107.0
Q ss_pred HHHHHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhc---------------chhh---------------------cc
Q 000177 541 EKYCIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSS---------------KYEE---------------------ES 584 (1922)
Q Consensus 541 q~~~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~---------------~~~~---------------------~~ 584 (1922)
|......|.-+-...+.-..+..++++-.++.||.... .... ..
T Consensus 512 qe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~ 591 (810)
T 3now_A 512 QELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ 591 (810)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC
Confidence 33455555555555666667888888888888776210 0000 00
Q ss_pred c-cccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCCc--ccccccceeeehhcchhhHHHHhhcCChhhHHHH
Q 000177 585 K-VAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRNN--QTFFGLSSCLFTIGSLQGIMERVCALPTDVVHQL 660 (1922)
Q Consensus 585 ~-~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~s--~a~tgvS~Clyylay~~~aMERvC~lp~~vl~~l 660 (1922)
+ .....|+|++.|..|..| .......|+.||+.+|..+=... .....-.-||..|+...+...++.. .. ..
T Consensus 592 ~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~-~~----g~ 666 (810)
T 3now_A 592 DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEG-NN----DR 666 (810)
T ss_dssp TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHS-SS----SH
T ss_pred CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHh-cc----Cc
Confidence 0 112236777777777776 46677788999998887653221 1122223456677777777666651 11 35
Q ss_pred HHHHHHHHhcCChHHhhhHhhHhhhhcch-h-HHHHHhhhcccHHHHHHHHh
Q 000177 661 VELAIQLLECTQDQARKNAALFFAAAFVF-R-AIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 661 V~yaLwLLecshds~r~~A~mFF~~sf~F-r-~il~~FD~~dGLrkL~N~i~ 710 (1922)
+++-+.||+......|..|+..++..-.+ + .+-..++.++|+..|++++.
T Consensus 667 l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~ 718 (810)
T 3now_A 667 VKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA 718 (810)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC
Confidence 67777889999999999999999877763 3 45666776899999998885
No 345
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=73.55 E-value=1.9e+02 Score=36.24 Aligned_cols=206 Identities=16% Similarity=0.159 Sum_probs=121.6
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEec
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFE 1593 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~ 1593 (1922)
+.-.+|..+.||.=. ..++.|||+++...+..+.-.. .|.. |.|-.+ +.|+--.+..|.-|++.. ...|+..|.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~Vvf--WkWis~-~~l~lVT~taVyHWsi~~-~s~P~kvFd 143 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTF--WKWISL-NTVALVTDNAVYHWSMEG-ESQPVKMFD 143 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCE--EEEEET-TEEEEECSSEEEEEESSS-SCCCEEEEE
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceE--EEecCC-CeEEEEcCCeeEEecccC-CCCchhhee
Confidence 455677777777665 6899999999998888776444 3433 456544 355555677899999975 356777776
Q ss_pred cc--------eeEEEcCCCCEEEEeecCC----CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC----
Q 000177 1594 GC--------KAARFSNSGNLFAALPTET----SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT---- 1657 (1922)
Q Consensus 1594 gh--------~sVaFSPDG~~LaSgS~~S----~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~---- 1657 (1922)
-| ..-..+++.++++..+... -.|.+.+|..+.+.. +.+. ||...-..|-.+|.
T Consensus 144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie---------Ghaa~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE---------GHAASFAQFKMEGNAEES 213 (494)
T ss_dssp CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEEC---------CSEEEEEEEECTTCSSEE
T ss_pred cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chhe---------eeeeeeEEEecCCCCCCc
Confidence 54 2345577888877654322 235678888875432 2232 45444344433331
Q ss_pred -eEe------ecc--EEEEcCCC---cc------eeeecc----CCCceEEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1658 -MLL------WNG--ILWDRRNS---VP------VHRFDQ----FTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1658 -lLa------Sgg--rLWDlrtg---k~------I~kf~g----h~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
++. .++ ++-++... .+ +..|-. ..-++++..++.-..+..-+ .++|+.|+.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 111 123 66776432 11 111111 11134788888777666666 49999999987
Q ss_pred EEEcCCC------------ceeEEEccCCCEEEEEEc
Q 000177 1711 RSVPSLD------------QTTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1711 ~tl~gH~------------~~sVaFSPdG~~LaSgs~ 1735 (1922)
..-.-.. .--+..+..|.++.....
T Consensus 294 ~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 294 YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred eeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 6543111 134556677777776644
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=73.13 E-value=31 Score=44.27 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=46.5
Q ss_pred eEEEeeecCCCcEEEEec--CCcEEEeccCCC----CCCc---c----eEe---ccceeEEEcCCCCEEEEeecCCCCCe
Q 000177 1555 TLVQSHLSGETQLLLSSS--SQDVHLWNASSI----AGGP---M----HSF---EGCKAARFSNSGNLFAALPTETSDRG 1618 (1922)
Q Consensus 1555 tsLq~afSpDG~lLaSSs--DgtVkLWDl~t~----~gk~---l----~tf---~gh~sVaFSPDG~~LaSgS~~S~Dgt 1618 (1922)
..+ ..+|||++++.+. +.+|.++|+.+. ..+. . ... .+....+|.++|.-+.+. --|..
T Consensus 326 HGv--~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtl---fidSq 400 (638)
T 3sbq_A 326 HGC--NTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTL---FIDSQ 400 (638)
T ss_dssp CCE--EECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEE---TTTTE
T ss_pred cce--eeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeee---eecce
Confidence 345 6799999999864 889999999751 0111 0 111 123678999999555554 57899
Q ss_pred EEEEECCCC
Q 000177 1619 ILLYDIQTY 1627 (1922)
Q Consensus 1619 IrIWDlrTg 1627 (1922)
|..|++...
T Consensus 401 vvkWni~~a 409 (638)
T 3sbq_A 401 VVKWNMEEA 409 (638)
T ss_dssp EEEEEHHHH
T ss_pred EEEEeccHH
Confidence 999999753
No 347
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=73.05 E-value=22 Score=42.71 Aligned_cols=108 Identities=16% Similarity=0.225 Sum_probs=73.4
Q ss_pred CEEEEEE---cCCCCEEEEEe-------------CCCcEEEEECC---CCCceeeec--cCC-----------CCeeEEE
Q 000177 1511 LLTCITF---LGDSSHIAVGS-------------HTKELKIFDSN---SSSPLESCT--SHQ-----------APVTLVQ 1558 (1922)
Q Consensus 1511 ~Vt~LaF---SPDG~lLASGS-------------~DGtIkIWDl~---tgk~l~tL~--gHs-----------s~VtsLq 1558 (1922)
.+..+.| .|+++++++.. .+..|..||+. +++.+.... ... .....+
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDv- 142 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQS- 142 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEE-
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCcee-
Confidence 3578999 68877777544 26789999998 787765442 211 236677
Q ss_pred eeecCCCcEEEEec-C-CcEEEeccCCCCCCcceEe----------ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCC
Q 000177 1559 SHLSGETQLLLSSS-S-QDVHLWNASSIAGGPMHSF----------EGCKAARFSNSGNLFAALPTETSDRGILLYDIQT 1626 (1922)
Q Consensus 1559 ~afSpDG~lLaSSs-D-gtVkLWDl~t~~gk~l~tf----------~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrT 1626 (1922)
...++|+..++++ - +.|..++.. ++.+..+ .+.+.++++|+|+.|++. ...+.+..+|+.+
T Consensus 143 -avD~~GnaYVt~s~~~~~I~rV~pd---G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~---~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 143 -AQDRDGNSYVAFALGMPAIARVSAD---GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAF---GGPRALTAFDVSK 215 (334)
T ss_dssp -EECTTSCEEEEEEESSCEEEEECTT---SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEE---SSSSSEEEEECSS
T ss_pred -EECCCCCEEEeCCCCCCeEEEEeCC---CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEE---cCCCeEEEEcCCC
Confidence 8899999888754 4 555444443 2222221 124689999999988887 3389999999884
No 348
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=72.62 E-value=2.2e+02 Score=36.59 Aligned_cols=158 Identities=7% Similarity=0.011 Sum_probs=91.8
Q ss_pred CCCcEEEEECCCCCceeeec-cCCCCeeEEEeeecCCCcEE-EEe-cCCcEEEeccCCCCCCcceEec----cceeEEEc
Q 000177 1529 HTKELKIFDSNSSSPLESCT-SHQAPVTLVQSHLSGETQLL-LSS-SSQDVHLWNASSIAGGPMHSFE----GCKAARFS 1601 (1922)
Q Consensus 1529 ~DGtIkIWDl~tgk~l~tL~-gHss~VtsLq~afSpDG~lL-aSS-sDgtVkLWDl~t~~gk~l~tf~----gh~sVaFS 1601 (1922)
....|+..++.+......+. ..-..+..| .|++.+..| .+. .++.|..+++.. ......+. ....+++.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l--~~d~~~~~lywtD~~~~~I~r~~~~g--~~~~~v~~~g~~~P~GlAvD 88 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASAL--DFDVTDNRIYWTDISLKTISRAFMNG--SALEHVVEFGLDYPEGMAVD 88 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEE--EEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSSCSCCCEEEEE
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEE--EEECCCCEEEEEECCCCeEEEEECCC--CCcEEEEeCCCCCcceEEEE
Confidence 56789999998665443332 223456788 778755544 443 478899888864 22222222 23678888
Q ss_pred CCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCC-CCeEeec-c---EEEEcC-CCccee
Q 000177 1602 NSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPS-DTMLLWN-G---ILWDRR-NSVPVH 1675 (1922)
Q Consensus 1602 PDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPd-G~lLaSg-g---rLWDlr-tgk~I~ 1675 (1922)
+.+..|+.+ +...+.|.+.++........+. . .......++++|. |.++++. + +||-.. .|....
T Consensus 89 ~~~~~LY~t--D~~~~~I~v~~~dG~~~~~l~~-~------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~ 159 (628)
T 4a0p_A 89 WLGKNLYWA--DTGTNRIEVSKLDGQHRQVLVW-K------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT 159 (628)
T ss_dssp TTTTEEEEE--ETTTTEEEEEETTSTTCEEEEC-S------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred eCCCEEEEE--ECCCCEEEEEecCCCcEEEEEe-C------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE
Confidence 766555554 2567889999987543322221 0 1122234999985 5555554 2 665543 233333
Q ss_pred e-eccCCCceEEEEecCCCEEEEEe
Q 000177 1676 R-FDQFTDHGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1676 k-f~gh~~~VsVaFSPdG~~LASGS 1699 (1922)
. +.....+..+++++++..|..+.
T Consensus 160 ~l~~~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 160 TLVPNVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp EEECSCSSEEEEEEETTTTEEEEEE
T ss_pred EEECCCCCcceEEEccccCEEEEEE
Confidence 2 33334445899999877776655
No 349
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=71.73 E-value=8.8 Score=47.69 Aligned_cols=157 Identities=13% Similarity=0.061 Sum_probs=95.3
Q ss_pred HHHHHHHhhhchhH-HHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchh
Q 000177 541 EKYCIQCLETLGEY-VEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lGEY-qE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~ 618 (1922)
+...+.+|+-+... .+.-..++..+++..++.+|.. .+..+-..|++.|..|..+ ..+...+++.|+++.
T Consensus 148 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~ 219 (530)
T 1wa5_B 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT--------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 219 (530)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHH
Confidence 34456666666542 3344456678999998888863 2334567788999998876 456677788999999
Q ss_pred hhccCCCcccc--cccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhcc-hhHHHHH
Q 000177 619 LLAVPRNNQTF--FGLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAFV-FRAIIDA 695 (1922)
Q Consensus 619 LL~vPR~s~a~--tgvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf~-Fr~il~~ 695 (1922)
|+.+=+..-.. .....||.+|+...+. .....+...++..-+.||..+++..+.+|+..++.-.. ....++.
T Consensus 220 L~~ll~~~~~~v~~~a~~~L~~L~~~~~~-----~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~ 294 (530)
T 1wa5_B 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKP-----QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 294 (530)
T ss_dssp HHHGGGSCCHHHHHHHHHHHHHHHCCSSS-----CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHhccCCHHHHHHHHHHHHHHhCCCCC-----CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99876542111 1122344444432200 01123345577777888888888888888776654332 2333333
Q ss_pred hhhcccHHHHHHHHh
Q 000177 696 FDAQDGLQKLLGLLN 710 (1922)
Q Consensus 696 FD~~dGLrkL~N~i~ 710 (1922)
+=..+++..|+.+|.
T Consensus 295 ~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 295 VIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHTTCHHHHHHGGG
T ss_pred HHhcCcHHHHHHHHC
Confidence 434577777777663
No 350
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=71.58 E-value=53 Score=37.44 Aligned_cols=140 Identities=10% Similarity=0.099 Sum_probs=69.8
Q ss_pred CCCEEEEEeC----C-----CcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEec------CCcEEEeccC
Q 000177 1520 DSSHIAVGSH----T-----KELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSSS------SQDVHLWNAS 1582 (1922)
Q Consensus 1520 DG~lLASGS~----D-----GtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSSs------DgtVkLWDl~ 1582 (1922)
++.+++.|+. + ..+.+||+.+.+.... +......-..+ .+ ++++++.|. -..+.+||..
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 145 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG--VI--DGHIYAVGGSHGCIHHNSVERYEPE 145 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE--EE--TTEEEEECCEETTEECCCEEEEETT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE--EE--CCEEEEEcCCCCCcccccEEEECCC
Confidence 5667777775 2 4688899877653221 11111111222 22 667776642 2458888887
Q ss_pred CCCCCcceEec----cceeEEEcCCCCEEEEeecCCC--CCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCC
Q 000177 1583 SIAGGPMHSFE----GCKAARFSNSGNLFAALPTETS--DRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSD 1656 (1922)
Q Consensus 1583 t~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~--DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG 1656 (1922)
+.....+..+. +|..+.+ +++.++.|+.... -..+.+||+.+.+-.. +. .+.....+|. .+.+ ++
T Consensus 146 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~--~~p~~r~~~~--~~~~--~~ 216 (308)
T 1zgk_A 146 RDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM-IT--AMNTIRSGAG--VCVL--HN 216 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-CC--CCSSCCBSCE--EEEE--TT
T ss_pred CCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee-CC--CCCCccccce--EEEE--CC
Confidence 62111111111 2233333 5677777633222 2568999998765432 22 1111111222 1222 66
Q ss_pred CeEeecc----------EEEEcCCCc
Q 000177 1657 TMLLWNG----------ILWDRRNSV 1672 (1922)
Q Consensus 1657 ~lLaSgg----------rLWDlrtgk 1672 (1922)
++++.+| .+||+.+.+
T Consensus 217 ~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 217 CIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEEeCCCCCCccceEEEEeCCCCc
Confidence 7777665 577777653
No 351
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=71.50 E-value=1e+02 Score=35.99 Aligned_cols=126 Identities=8% Similarity=0.035 Sum_probs=71.0
Q ss_pred EEEcCCCCEEEEEe--CCC--cEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEec--CCcEEEeccCCCCCCc
Q 000177 1515 ITFLGDSSHIAVGS--HTK--ELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSS--SQDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1515 LaFSPDG~lLASGS--~DG--tIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSs--DgtVkLWDl~t~~gk~ 1588 (1922)
..|++++++|+-.. .++ .|..-+++ |.....+..+.. . .++++++.|.-.+ ..+|.+.++.. +..
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~----~--~~~~~g~~iy~t~~g~~~Iy~~~l~g--~~~ 179 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL----F--TCNTSDRYFYYNNPKNGQLYRYDTAS--QSE 179 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC----C--CSEEETTEEEEECTTTCCEEEEETTT--TEE
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc----e--EeeEECCEEEEEeCCCceEEEEECCC--CCE
Confidence 36788899888766 344 45555665 333445543432 3 4566777777544 45677777654 332
Q ss_pred ceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeec
Q 000177 1589 MHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWN 1662 (1922)
Q Consensus 1589 l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSg 1662 (1922)
...+.+.....++|++.+|+-.... ....|..-++..... ..+. ... ...|+|++.+|..+
T Consensus 180 ~~l~~~~~~~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~-~~Lt---------~~~--~~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 180 ALFYDCNCYKPVVLDDTNVYYMDVN-RDNAIVHVNINNPNP-VVLT---------EAN--IEHYNVYGSLIFYQ 240 (302)
T ss_dssp EEEECSCEEEEEEEETTEEEEEEGG-GTTEEEEECSSSCCC-EECS---------CSC--EEEEEEETTEEEEE
T ss_pred EEEeCCCccceeeecCCEEEEEEcC-CCcEEEEEECCCCCe-EEEe---------CCC--cceEEECCCEEEEE
Confidence 3334444444577988888776332 124566666665442 3332 111 24588888877743
No 352
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=70.17 E-value=2e+02 Score=34.91 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=120.8
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcceEec
Q 000177 1514 CITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPMHSFE 1593 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l~tf~ 1593 (1922)
+.-.+|..+.||.=. ..++.|||+++.+.++.+.-. ..|. -|.|-.+. .|+--.+..|.-|++.. ...|+..|.
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~Vv--fWkWis~~-~L~lVT~taVyHWs~~~-~s~P~kvFd 144 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVT--FWKWISLN-TVALVTDNAVYHWSMEG-ESQPVKMFD 144 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEE--EEEECSSS-EEEEEESSEEEEEESST-TCCCEEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccE--EEEecCCC-eEEEEcCCcEEEEcccC-CCCCceeee
Confidence 345688888777765 678999999999888877643 3444 35676443 44445567799999975 356777776
Q ss_pred cc--------eeEEEcCCCCEEEEeecCC----CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC----
Q 000177 1594 GC--------KAARFSNSGNLFAALPTET----SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT---- 1657 (1922)
Q Consensus 1594 gh--------~sVaFSPDG~~LaSgS~~S----~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~---- 1657 (1922)
-| -.-..+++.++++..+... -.|.+.+|..+.+.. +.+. ||...-..|-.+|.
T Consensus 145 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ie---------Ghaa~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 145 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIE---------GHAASFAQFKMEGNAEES 214 (365)
T ss_dssp CCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEEC---------CSEEEEEEECCTTCSSCE
T ss_pred cchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ceee---------eeeeeeEEEecCCCCCCc
Confidence 54 2345577788777663322 235677888775432 3332 55544444433332
Q ss_pred -eEe------ecc--EEEEcCCC---cc------eeeecc----CCCceEEEEecCCCEEEEEe-----EEEecCCCeEE
Q 000177 1658 -MLL------WNG--ILWDRRNS---VP------VHRFDQ----FTDHGGGGFHPAGNEVIINS-----EVWDLRKFRLL 1710 (1922)
Q Consensus 1658 -lLa------Sgg--rLWDlrtg---k~------I~kf~g----h~~~VsVaFSPdG~~LASGS-----eIWDLrTgklL 1710 (1922)
++. .++ ++-++... .+ +..|-. ..-++++..++.-..+..-+ .++|+.|+.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 121 122 66776432 11 111111 11134778888777666666 49999999988
Q ss_pred EEEcCCCc------------eeEEEccCCCEEEEEEc
Q 000177 1711 RSVPSLDQ------------TTITFNARGDVIYAILR 1735 (1922)
Q Consensus 1711 ~tl~gH~~------------~sVaFSPdG~~LaSgs~ 1735 (1922)
..-.-... --+..+..|.++.....
T Consensus 295 ~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 295 YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred EEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 65431111 24555666666665543
No 353
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=69.26 E-value=26 Score=42.13 Aligned_cols=153 Identities=12% Similarity=0.011 Sum_probs=93.6
Q ss_pred HHHHHHhhhc--hhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHh-ccccch
Q 000177 542 KYCIQCLETL--GEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFV-DRGGMQ 617 (1922)
Q Consensus 542 ~~~l~~L~~l--GEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV-~~gGlq 617 (1922)
-..|.+|+.- -++.+ .+.+.+++..++.+|.+.. +..+...|+..|..|..|- .--..++ ..|+|.
T Consensus 148 ~~aL~nLs~~~~~~~k~---~i~~~G~Ip~Lv~lL~~~~-------~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~ 217 (354)
T 3nmw_A 148 ASVLRNLSWRADVNSKK---TLREVGSVKALMECALEVK-------KESTLKSVLSALWNLSAHCTENKADICAVDGALA 217 (354)
T ss_dssp HHHHHHHHTTCCHHHHH---HHHHTTHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHH
T ss_pred HHHHHHHhccCCHHHHH---HHHHCCCHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHH
Confidence 3467777653 24555 4558899999888775421 1123445666677776632 3345677 899999
Q ss_pred hhhccCCCccc------ccccceeeehhcc----hhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-h
Q 000177 618 KLLAVPRNNQT------FFGLSSCLFTIGS----LQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAA-A 686 (1922)
Q Consensus 618 ~LL~vPR~s~a------~tgvS~Clyylay----~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-s 686 (1922)
.|.++=+..-. ..-...+|.+|+. +++.-+.|..- . .|..-+.||..+.+..+.+|+.-++. +
T Consensus 218 ~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~--g----~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 218 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN--N----CLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT--T----HHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc--C----CHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 77766543211 1122346777775 55655555432 2 45666677888889999999877654 3
Q ss_pred cchhHHHHHhhhcccHHHHHHHHh
Q 000177 687 FVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 687 f~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
.........+=..+++..|++++.
T Consensus 292 ~~~~~~~~~i~~~G~i~~Lv~LL~ 315 (354)
T 3nmw_A 292 ARNPKDQEALWDMGAVSMLKNLIH 315 (354)
T ss_dssp SSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHh
Confidence 344555555666678887776653
No 354
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=68.76 E-value=65 Score=36.38 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=53.4
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEe-cC-----CcEEEeccCCCCC
Q 000177 1520 DSSHIAVGSHT-----KELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSS-SS-----QDVHLWNASSIAG 1586 (1922)
Q Consensus 1520 DG~lLASGS~D-----GtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSS-sD-----gtVkLWDl~t~~g 1586 (1922)
++.+++.|+.+ ..+.+||..+.+.... +......-..+ .+ ++++++.| .+ ..+.+||+.+...
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA--VL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EE--TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEE--EE--CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 56777788755 3588899877653322 11111111122 22 56666664 33 2477888775211
Q ss_pred CcceEec----cceeEEEcCCCCEEEEeecCCC----CCeEEEEECCCCcee
Q 000177 1587 GPMHSFE----GCKAARFSNSGNLFAALPTETS----DRGILLYDIQTYQLE 1630 (1922)
Q Consensus 1587 k~l~tf~----gh~sVaFSPDG~~LaSgS~~S~----DgtIrIWDlrTgk~i 1630 (1922)
..+..+. .|..+.+ +++.++.|+.... -..+.+||+.+.+-.
T Consensus 137 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 137 FHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred eecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 1111111 1222222 5667777643222 245889999876543
No 355
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=67.03 E-value=1.4e+02 Score=37.25 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=58.5
Q ss_pred eeEEEeeecCCCc--EEEEecCCcEEEeccCCCC-CCcceEe-------------ccceeEEEcCC----CCEEEEeecC
Q 000177 1554 VTLVQSHLSGETQ--LLLSSSSQDVHLWNASSIA-GGPMHSF-------------EGCKAARFSNS----GNLFAALPTE 1613 (1922)
Q Consensus 1554 VtsLq~afSpDG~--lLaSSsDgtVkLWDl~t~~-gk~l~tf-------------~gh~sVaFSPD----G~~LaSgS~~ 1613 (1922)
-+.| +|.|||. ++++-..|.|++++..... ..++..+ .+...++|+|+ +.++++-+..
T Consensus 16 P~~~--a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 16 PVGA--LHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp EEEE--ECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred ceEE--EECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4567 7899985 8998889999999753210 1122211 12366999996 4444443211
Q ss_pred CC-------C--CeEEEEECCCC----------ceeeeeccccccccCCCCcceEEEEcCCCCeEeecc
Q 000177 1614 TS-------D--RGILLYDIQTY----------QLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG 1663 (1922)
Q Consensus 1614 S~-------D--gtIrIWDlrTg----------k~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg 1663 (1922)
.. + ..|.-|.+..+ +.+..+. .....|....+.|.|||.++++.|
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~-----~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVA-----ELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEE-----ESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcC-----CCCCcccCCcEeECCCCcEEEEeC
Confidence 11 1 13444555421 1222221 123457777899999999888654
No 356
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=66.46 E-value=9 Score=44.96 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=91.0
Q ss_pred hhhccchHHHHH-HHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHhccccchhhhccCCCcccccccceeeeh
Q 000177 561 VLHEKGVDVCLA-LLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFVDRGGMQKLLAVPRNNQTFFGLSSCLFT 638 (1922)
Q Consensus 561 ~~~~~~~~l~l~-ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV~~gGlq~LL~vPR~s~a~tgvS~Clyy 638 (1922)
+...+++..++. ||.. .+..+-..|++.|+.+..+. +.-..+|+.||+..|+.+=+.+--..-...++|.
T Consensus 77 ~~~~G~l~~Lv~~lL~s--------~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~A 148 (296)
T 1xqr_A 77 FCQLSGMHLLVGRYLEA--------GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFA 148 (296)
T ss_dssp HHHTTHHHHHHHTTTTC--------SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHH
Confidence 345677777666 6642 23345668999999998774 5667789999999999887632112223445555
Q ss_pred hcch----hhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhh-cchhHHHHHhhhcccHHHHHHHHh
Q 000177 639 IGSL----QGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAA-FVFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 639 lay~----~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~s-f~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
|+.+ +...+.+... ..+..-+.||..++...+..|+..++.. .......+.|=..++++.|+.+|.
T Consensus 149 Lsnl~~~~~~~~~~~~~~------ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~ 219 (296)
T 1xqr_A 149 ISCLVREQEAGLLQFLRL------DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR 219 (296)
T ss_dssp HHHHHTTCHHHHHHHHHT------THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHHC------CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHc
Confidence 5543 2333333331 3566677788889999999998877753 334556667767799999999885
No 357
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=65.58 E-value=32 Score=42.71 Aligned_cols=76 Identities=4% Similarity=0.076 Sum_probs=52.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCc------------eeeecc------CCCCeeEEEeeecCC---CcEEE
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSP------------LESCTS------HQAPVTLVQSHLSGE---TQLLL 1569 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~------------l~tL~g------Hss~VtsLq~afSpD---G~lLa 1569 (1922)
.|..+..||+|++||.-+. .+|.|-.+..+.. .+++.- ...+|..+ .|+|- +..|+
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qV--lWHPl~~~ds~LV 143 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKV--LFHPKSYRDSCIV 143 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEE--EECTTBGGGCEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEE--EeccccCCCCeEE
Confidence 5778999999999998864 4788888863310 123321 25678888 67774 33555
Q ss_pred E-ecCCcEEEeccCCCCCCcc
Q 000177 1570 S-SSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1570 S-SsDgtVkLWDl~t~~gk~l 1589 (1922)
+ -+|++|++||+.....++.
T Consensus 144 VLtsD~~Ir~yDl~~s~~~P~ 164 (452)
T 3pbp_A 144 VLKEDDTITMFDILNSQEKPI 164 (452)
T ss_dssp EEETTSCEEEEETTCTTSCCE
T ss_pred EEecCCEEEEEEcccCCCCCc
Confidence 5 8899999999986333444
No 358
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=65.26 E-value=5.5 Score=47.87 Aligned_cols=108 Identities=8% Similarity=0.043 Sum_probs=69.2
Q ss_pred CEEEEEeCCCcEEEEECCCCCceeeeccC-CCCeeEEE-eeecCCCcEEEE--ecCCcEEEeccCCCCCCcceEeccc--
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSPLESCTSH-QAPVTLVQ-SHLSGETQLLLS--SSSQDVHLWNASSIAGGPMHSFEGC-- 1595 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~l~tL~gH-ss~VtsLq-~afSpDG~lLaS--SsDgtVkLWDl~t~~gk~l~tf~gh-- 1595 (1922)
.+++.++.||.|.-+|..+|+.+-++... ..++.... .....++..++. ..||.|..++..+ +.....+.-.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~--G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ--GLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT--EEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC--CcEEeeeccccc
Confidence 47899999999999999999988887543 12333321 011113344444 3689998888876 4333333211
Q ss_pred ---eeEEEc-------C----CCCEEEEeecCCCCCeEEEEECCCCceeeeec
Q 000177 1596 ---KAARFS-------N----SGNLFAALPTETSDRGILLYDIQTYQLEAKLS 1634 (1922)
Q Consensus 1596 ---~sVaFS-------P----DG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~ 1634 (1922)
.-+.+. + .+..+++| +.++++...|+++|+.+..+.
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~G---s~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTG---SMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEEC---EEEEEEEEEETTTCCEEEEES
T ss_pred eeccccccCCCceeecccccccCCEEEEE---ecCCEEEEEECCCCcEEEEEe
Confidence 112211 0 34566777 788999999999999999886
No 359
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=65.22 E-value=2.2e+02 Score=36.55 Aligned_cols=112 Identities=5% Similarity=-0.117 Sum_probs=71.3
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCC-CcEEEEec--CCcEEEeccCCCC
Q 000177 1510 ALLTCITFLGDSS-HIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGE-TQLLLSSS--SQDVHLWNASSIA 1585 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpD-G~lLaSSs--DgtVkLWDl~t~~ 1585 (1922)
.....+++.+.+. +.++-...+.|.+.+++.......+...-.....| ++.|. |.++.|-. .+.|...++.
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~I--avdp~~g~ly~tD~g~~~~I~r~~~d--- 158 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI--ALDPSSGFMYWTDWGEVPKIERAGMD--- 158 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCE--EEETTTTEEEEEECSSSCEEEEEETT---
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceE--EEecCCCeEEEeccCCCCEEEEEECC---
Confidence 4578999999555 44555567899999986543322233344456677 77776 55555632 4566666665
Q ss_pred CCcceEe-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCc
Q 000177 1586 GGPMHSF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQ 1628 (1922)
Q Consensus 1586 gk~l~tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk 1628 (1922)
+.....+ ...+.+++.++++.|+.+ +...+.|..+|+....
T Consensus 159 G~~~~~l~~~~~~~P~Glald~~~~~LY~a--D~~~~~I~~~~~dG~~ 204 (619)
T 3s94_A 159 GSSRFIIINSEIYWPNGLTLDYEEQKLYWA--DAKLNFIHKSNLDGTN 204 (619)
T ss_dssp SCSCEEEECSSCSSEEEEEEETTTTEEEEE--ETTTCCEEEESSSCCE
T ss_pred CCceEEEEeCCCCCCcEEEEEccCCEEEEE--eCCCCeEEEecCCCCc
Confidence 3333222 224789999977766665 3667889999987533
No 360
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=64.68 E-value=12 Score=49.47 Aligned_cols=160 Identities=11% Similarity=0.100 Sum_probs=106.5
Q ss_pred HHHHhccceEEEeecchhhhhhhccccCCccchHHHHhhhhccCCCCCccchhHHHHHhhhcccCCCcCCCCCCccccCc
Q 000177 856 LQYALGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPPSISNKPPLLAQGQ 935 (1922)
Q Consensus 856 v~~aL~vL~i~tvvP~~r~~l~~~~~s~~~~Gi~ilL~~a~~g~~~~D~ev~~~AL~Vl~ncVc~P~~~~~~~~~~~~~~ 935 (1922)
.+.|++.|+-+|+-|.++..|++.. .-+..|+.+++ . -.|..++-.||.||.||+-.++.+.....
T Consensus 351 ~~~AvEgLaYLSl~~~VKe~L~~d~-----~~L~~Lv~llk-~--~~d~s~~Ygal~IL~NLt~~~~~~~~e~~------ 416 (778)
T 3opb_A 351 VEMSVEALAYLSLKASVKIMIRSNE-----SFTEILLTMIK-S--QKMTHCLYGLLVIMANLSTLPEEXXXXXX------ 416 (778)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHCH-----HHHHHHHHHHT-T--TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhCH-----HHHHHHHHHHh-C--CCCchHHHHHHHHHHHhcCCCcccchhhh------
Confidence 7899999999999999999997542 12677788876 2 23777899999999999997764221100
Q ss_pred cccccccCCCCCCCcccccccccccccccccCcccccccccccccccccCCCcccccccCCCCCCCCCCCCCcccccccc
Q 000177 936 QSVSGQTSNGPSMEPRDRNAERNVSDRVVYMPSQSDLRERNVDSSLLDRGSSANTQLACSTSQTPVPTPTSGLVGDRRIS 1015 (1922)
Q Consensus 936 ~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 1015 (1922)
.+ ..+. ..|+ ... |. ..+.. |
T Consensus 417 -----------~l-~~Lk--------------------------------~~A~---~~~-p~-~~~~d------~---- 437 (778)
T 3opb_A 417 -----------XX-XXXX--------------------------------XXXX---XXX-PA-ADKVG------A---- 437 (778)
T ss_dssp -------------------------------------------------------------------CC------T----
T ss_pred -----------hh-hhhh--------------------------------hhcc---ccC-cc-cCccc------c----
Confidence 00 0000 0000 000 00 00110 0
Q ss_pred cCCCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHhhccccCCCCchhhHHHHHHHHHHhCccccHHHHHHHHhhcchH
Q 000177 1016 LGAGAGCAGLAAQLEQGYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGK 1095 (1922)
Q Consensus 1016 ~~~~~~~~g~~~~~e~~~~~~~~~VR~nnGIkvLL~LL~~k~~~Pit~aD~iRaLAcraL~GLaR~~~vrqIlskLpl~~ 1095 (1922)
--...+++..+.+..|-.++.|..|+.||.. .-+.+|.+|+|+|.-|+.++..|..+-+-+...
T Consensus 438 ---------~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S-------~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~ 501 (778)
T 3opb_A 438 ---------EKAAKEDILLFNEKYILRTELISFLKREMHN-------LSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVK 501 (778)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG-------SCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHH
T ss_pred ---------cccchHHHHHHHHHHHHHCcCHHHHHHHHcC-------CCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 0023456666678999999999999999973 235689999999999999999999998877666
Q ss_pred HHHHHHhcc
Q 000177 1096 KLSELIRDS 1104 (1922)
Q Consensus 1096 ~lq~Lmr~p 1104 (1922)
.|-+++...
T Consensus 502 ~LL~lL~s~ 510 (778)
T 3opb_A 502 IILEYLANK 510 (778)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhcC
Confidence 666666654
No 361
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=64.33 E-value=11 Score=45.15 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=60.0
Q ss_pred HHHHHHhcccHHHHHHhhccccCCCCchhhHHHHHHHHHHhCcc-ccHHHHHHHHhhcchHHHHHHHhccCCCCCCccch
Q 000177 1036 AREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLA-RDDTIAHILTKLQVGKKLSELIRDSGGQTPATEQG 1114 (1922)
Q Consensus 1036 ~~~~VR~nnGIkvLL~LL~~k~~~Pit~aD~iRaLAcraL~GLa-R~~~vrqIlskLpl~~~lq~Lmr~p~lq~~~~e~~ 1114 (1922)
.++.|+..+||..|+.||... -+.++.-||.+|.-|+ +++..++.+-....-..|.+|++.+ +
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~--------~- 318 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSH-------SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--------H- 318 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS--------S-
T ss_pred HHHHHHHcCCHHHHHHHHcCC-------ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC--------C-
Confidence 357889999999999999832 1348999999999999 7899999988877767787777654 1
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 000177 1115 RWQAELSQVAIELIAIVT 1132 (1922)
Q Consensus 1115 ~f~~~f~~~A~eLie~vt 1132 (1922)
...++.|+..|.-++
T Consensus 319 ---~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 319 ---KMIAMGSAAALRNLM 333 (354)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 223467777777775
No 362
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=63.97 E-value=1.3e+02 Score=39.03 Aligned_cols=112 Identities=9% Similarity=0.049 Sum_probs=60.6
Q ss_pred EEEEcCCCCEEEEEeCCC------cEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEec-C--CcEEEeccC
Q 000177 1514 CITFLGDSSHIAVGSHTK------ELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSSS-S--QDVHLWNAS 1582 (1922)
Q Consensus 1514 ~LaFSPDG~lLASGS~DG------tIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSSs-D--gtVkLWDl~ 1582 (1922)
++.+..++++++.|+.++ .+.+||..+.+.... +......-.. ....++++++.|. + +.+.+||..
T Consensus 445 ~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~---~~~~~~~iyv~GG~~~~~~v~~yd~~ 521 (695)
T 2zwa_A 445 FTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSA---CSLPDGNVLILGGVTEGPAMLLYNVT 521 (695)
T ss_dssp EEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEE---EECTTSCEEEECCBCSSCSEEEEETT
T ss_pred EEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceE---EEEcCCEEEEECCCCCCCCEEEEECC
Confidence 444433778888887543 578899877543321 1111111112 2223677777743 2 278899987
Q ss_pred CCCCCcceE---e----ccceeEEEcCC-CCEEEEeecCCC----CCeEEEEECCCCc
Q 000177 1583 SIAGGPMHS---F----EGCKAARFSNS-GNLFAALPTETS----DRGILLYDIQTYQ 1628 (1922)
Q Consensus 1583 t~~gk~l~t---f----~gh~sVaFSPD-G~~LaSgS~~S~----DgtIrIWDlrTgk 1628 (1922)
+.....+.. . .+|..+.+..+ ++.++.|+.... -..+.+||+.+..
T Consensus 522 t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 622111111 1 12344666665 667777643211 2568999998876
No 363
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=61.20 E-value=7.8 Score=37.99 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHcCC
Q 000177 1169 RELLLLIHEHLQASGLVTTAAQLLKEAQL 1197 (1922)
Q Consensus 1169 ~ELL~LI~~HL~~~GL~~TA~~L~kEA~L 1197 (1922)
+||..-|.++|.+.|+.+++++|.+|+++
T Consensus 11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~ 39 (88)
T 1uuj_A 11 DELNRAIADYLRSNGYEEAYSVFKKEAEL 39 (88)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhcC
Confidence 48999999999999999999999999998
No 364
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=60.94 E-value=1.1e+02 Score=34.80 Aligned_cols=104 Identities=9% Similarity=0.101 Sum_probs=51.5
Q ss_pred CCCEEEEEeCC----CcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEec-----C-----CcEEEeccCC
Q 000177 1520 DSSHIAVGSHT----KELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSSS-----S-----QDVHLWNASS 1583 (1922)
Q Consensus 1520 DG~lLASGS~D----GtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSSs-----D-----gtVkLWDl~t 1583 (1922)
++.+++.|+.+ ..+.+||..+++.... +......-..+ .+ ++++++.|. + ..+.+||..+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGC--VV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEE--EE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 45666666642 3688888876653321 11111111112 12 566666642 2 3578888876
Q ss_pred CCCCcceEec----cceeEEEcCCCCEEEEeecCCC--CCeEEEEECCCCce
Q 000177 1584 IAGGPMHSFE----GCKAARFSNSGNLFAALPTETS--DRGILLYDIQTYQL 1629 (1922)
Q Consensus 1584 ~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~--DgtIrIWDlrTgk~ 1629 (1922)
.....+..+. .|..+.+ +++.++.|+.... -..+.+||+.+.+-
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 2111111111 1233333 5677777632211 24688999987654
No 365
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=59.67 E-value=25 Score=43.83 Aligned_cols=152 Identities=13% Similarity=0.009 Sum_probs=90.9
Q ss_pred HHHHHhhhc--hhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHh-ccccchh
Q 000177 543 YCIQCLETL--GEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFV-DRGGMQK 618 (1922)
Q Consensus 543 ~~l~~L~~l--GEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV-~~gGlq~ 618 (1922)
..|.+|+.- -++.+ .+.+.+++..++.+|.+.. +..+.-.|+..|..|..|- .--..++ ..|||..
T Consensus 265 ~aL~nLs~~~~~~~k~---~I~~~GaI~~LV~lLl~s~-------~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~ 334 (458)
T 3nmz_A 265 SVLRNLSWRADVNSKK---TLREVGSVKALMECALEVK-------KESTLKSVLSALWNLSAHCTENKADICAVDGALAF 334 (458)
T ss_dssp HHHHHHTSSCCHHHHH---HHHHTTHHHHHHHHHTTCC-------SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHH
T ss_pred HHHHHHhcCCCHHHHH---HHHHcCCHHHHHHHHhcCC-------CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHH
Confidence 467777653 24544 4558899988888775421 1123445666666666642 3345677 8999997
Q ss_pred hhccCCCccc------ccccceeeehhcc----hhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhh-hc
Q 000177 619 LLAVPRNNQT------FFGLSSCLFTIGS----LQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAA-AF 687 (1922)
Q Consensus 619 LL~vPR~s~a------~tgvS~Clyylay----~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~-sf 687 (1922)
|.++=+..-. ..-...||..|+. +++.-+.|..- ..|..-+.||..+.+..+++|+..++. +.
T Consensus 335 Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~------G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN------NCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc------ccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 7765443211 1112235666664 44443333221 245666778888889999999877654 33
Q ss_pred chhHHHHHhhhcccHHHHHHHHh
Q 000177 688 VFRAIIDAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 688 ~Fr~il~~FD~~dGLrkL~N~i~ 710 (1922)
.-+.....+=..+|+..|++++.
T Consensus 409 ~~~~~~~~i~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 409 RNPKDQEALWDMGAVSMLKNLIH 431 (458)
T ss_dssp SCHHHHHHHHHHTHHHHHHTTTT
T ss_pred CCHHHHHHHHHCCCHHHHHHHHh
Confidence 44555556666678888877663
No 366
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=58.64 E-value=1.6e+02 Score=33.16 Aligned_cols=104 Identities=9% Similarity=0.119 Sum_probs=54.4
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEec----------CCcEEEecc
Q 000177 1520 DSSHIAVGSHT------KELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSSS----------SQDVHLWNA 1581 (1922)
Q Consensus 1520 DG~lLASGS~D------GtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSSs----------DgtVkLWDl 1581 (1922)
++++++.|+.+ ..+.+||..+.+.... +......-..+ .+ ++++++.|. -..+.+||+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMV--EA--NGLIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EE--TTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEE--EE--CCEEEEECCCCCCCCcccccceEEEeCC
Confidence 67778888866 4688999887654322 11111111122 22 667666642 245788888
Q ss_pred CCCCCCcceEec----cceeEEEcCCCCEEEEeecCCC--CCeEEEEECCCCce
Q 000177 1582 SSIAGGPMHSFE----GCKAARFSNSGNLFAALPTETS--DRGILLYDIQTYQL 1629 (1922)
Q Consensus 1582 ~t~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S~--DgtIrIWDlrTgk~ 1629 (1922)
.+.....+..+. .|..+.+ +++.++.|+.... -..+.+||+.+.+-
T Consensus 177 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 177 ATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEW 228 (306)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred CCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence 762111111111 1222333 5667777632211 24588999987653
No 367
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=58.46 E-value=68 Score=40.00 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=89.4
Q ss_pred HHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHhccccchhhhcc
Q 000177 544 CIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFVDRGGMQKLLAV 622 (1922)
Q Consensus 544 ~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV~~gGlq~LL~v 622 (1922)
+|.||+.-.+ +....+...+++..+..||.. .+..+...+++.|..|++|. .....+++.|+++.|+.+
T Consensus 274 aL~~l~~~~~--~~~~~v~~~g~i~~Lv~lL~~--------~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 343 (529)
T 3tpo_A 274 AISYLTDGPN--ERIEMVVKKGVVPQLVKLLGA--------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 343 (529)
T ss_dssp HHHHHHSSCH--HHHHHHHTTTCHHHHHHHHTC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred HHHHhhhhhh--hhHHHHHhccchHHHHHHhcC--------CChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHH
Confidence 4444443222 233346677888887777753 23345667899999998875 556678899999987766
Q ss_pred CCCcccccccceeeehhcchhhHHHHhhcCChhhHH-----HHHHHHHHHHhcCChHHhhhHhhHhhhhcch--hHHHHH
Q 000177 623 PRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVVH-----QLVELAIQLLECTQDQARKNAALFFAAAFVF--RAIIDA 695 (1922)
Q Consensus 623 PR~s~a~tgvS~Clyylay~~~aMERvC~lp~~vl~-----~lV~yaLwLLecshds~r~~A~mFF~~sf~F--r~il~~ 695 (1922)
=+.+-...= --+. -++-.+|.-..+... .++..-+.+|.+++...|+.|+..++-.... .--+..
T Consensus 344 L~~~~~~i~-~~a~-------~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~ 415 (529)
T 3tpo_A 344 LTNPKTNIQ-KEAT-------WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVY 415 (529)
T ss_dssp TTCSSHHHH-HHHH-------HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HcCCCHHHH-HHHH-------HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 543321110 0011 223333333332221 3667778899999999999998777643332 223334
Q ss_pred hhhcccHHHHHHHHh
Q 000177 696 FDAQDGLQKLLGLLN 710 (1922)
Q Consensus 696 FD~~dGLrkL~N~i~ 710 (1922)
+=.++++..|+++|.
T Consensus 416 l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 416 LVHCGIIEPLMNLLS 430 (529)
T ss_dssp HHHTTCHHHHHHGGG
T ss_pred HHHCcCHHHHHHHhc
Confidence 445788888887764
No 368
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=58.21 E-value=2.6 Score=50.43 Aligned_cols=116 Identities=18% Similarity=0.295 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHh-hhhhhHHHHhccccchhhhccCCCcc----cc--cccceee-e-----hhcchhhHHHHhhcCChhh
Q 000177 590 LPDVMKLICALA-AHRKFAALFVDRGGMQKLLAVPRNNQ----TF--FGLSSCL-F-----TIGSLQGIMERVCALPTDV 656 (1922)
Q Consensus 590 ~~eaLk~l~aLl-~HkKfA~eFV~~gGlq~LL~vPR~s~----a~--tgvS~Cl-y-----ylay~~~aMERvC~lp~~v 656 (1922)
+-++|.-|..++ .-+-||.|||+++|+..|+++-...- +| +.+.-++ | .+-.......+|+.+=...
T Consensus 135 lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~ 214 (339)
T 3dad_A 135 LRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASL 214 (339)
T ss_dssp HHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCc
Confidence 557888888844 67999999999999999999886541 11 0111111 1 1111222333333333333
Q ss_pred HHHHHHHHHHHHhcCChHHhhhHhhHhhhhcchhHHHHHhhhcccHHHHHHHHhhh
Q 000177 657 VHQLVELAIQLLECTQDQARKNAALFFAAAFVFRAIIDAFDAQDGLQKLLGLLNDA 712 (1922)
Q Consensus 657 l~~lV~yaLwLLecshds~r~~A~mFF~~sf~Fr~il~~FD~~dGLrkL~N~i~~l 712 (1922)
...+|+-||.||++-=+..--|+.++. ++| ..+|...|.+.+-|++..|
T Consensus 215 ~~~V~k~AL~LL~v~V~~se~~~~lv~------~av-~~v~~~~~~~p~~~Lv~~L 263 (339)
T 3dad_A 215 SRLVVKTALKLLLVFVEYSENNAPLFI------RAV-NSVASTTGAPPWANLVSIL 263 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGHHHHH------HHH-HHHHHHHCCCTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHccCcccchHHH------HHH-HHhhhccCCCcHHHHHHHH
Confidence 466788888888765444443443332 222 2246666744555555544
No 369
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=57.06 E-value=1.2e+02 Score=37.69 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=58.7
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC---Cceeeec-----c----CCCCeeEEEeeecCC----CcEEEE-e
Q 000177 1510 ALLTCITFLGDSS-HIAVGSHTKELKIFDSNSS---SPLESCT-----S----HQAPVTLVQSHLSGE----TQLLLS-S 1571 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~-lLASGS~DGtIkIWDl~tg---k~l~tL~-----g----Hss~VtsLq~afSpD----G~lLaS-S 1571 (1922)
..-+.++|.|||. .|+++...|.|++++.... ..+..+. + .......| +|+|+ +.+.++ +
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgi--a~~P~f~~n~~lYv~yt 91 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSL--AFHPNYKKNGKLYVSYT 91 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEE--EECTTHHHHCEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceee--EeCCCCcCCCEEEEEEe
Confidence 3468999999996 5666678999999975422 1222221 1 14567788 78886 555555 3
Q ss_pred c--CC----------cEEEeccCCC--------CCCcceEec----cc--eeEEEcCCCCEEEEee
Q 000177 1572 S--SQ----------DVHLWNASSI--------AGGPMHSFE----GC--KAARFSNSGNLFAALP 1611 (1922)
Q Consensus 1572 s--Dg----------tVkLWDl~t~--------~gk~l~tf~----gh--~sVaFSPDG~~LaSgS 1611 (1922)
. ++ .|.-|.+... ..+.+..+. .| ..+.|.|||.++++.+
T Consensus 92 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 92 TNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp ECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEEC
T ss_pred CCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeC
Confidence 2 21 3333554321 011222222 24 5699999999888773
No 370
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=56.37 E-value=2.8e+02 Score=31.94 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=17.1
Q ss_pred CCCEEEEEeC-C---------CcEEEEECCCCCc
Q 000177 1520 DSSHIAVGSH-T---------KELKIFDSNSSSP 1543 (1922)
Q Consensus 1520 DG~lLASGS~-D---------GtIkIWDl~tgk~ 1543 (1922)
++++++.|+. + ..+.+||+.+.+.
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 5677777776 2 4688999877653
No 371
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=56.25 E-value=2.2e+02 Score=32.38 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=53.6
Q ss_pred EEcCCCCEEEEEeC----C-------CcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEec-C--------
Q 000177 1516 TFLGDSSHIAVGSH----T-------KELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSSS-S-------- 1573 (1922)
Q Consensus 1516 aFSPDG~lLASGS~----D-------GtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSSs-D-------- 1573 (1922)
....++.+++.|+. + ..+.+||..+++.... +......-..+ .+ ++++++.|. +
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~--~~~lyv~GG~~~~~~~~~~ 116 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLG--EA--LNSIYVVGGREIKDGERCL 116 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEE--EE--TTEEEEECCEESSTTCCBC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEE--EE--CCEEEEEeCCcCCCCCccc
Confidence 33457788888884 1 1277888877653221 11000111111 12 566666643 1
Q ss_pred CcEEEeccCCCCCCcceEec----cceeEEEcCCCCEEEEeecCC---CCCeEEEEECCCCce
Q 000177 1574 QDVHLWNASSIAGGPMHSFE----GCKAARFSNSGNLFAALPTET---SDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1574 gtVkLWDl~t~~gk~l~tf~----gh~sVaFSPDG~~LaSgS~~S---~DgtIrIWDlrTgk~ 1629 (1922)
..+.+||..+...+.+..+. +|..+. .+++.++.|+... .-..+.+||+.+.+-
T Consensus 117 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 177 (315)
T 4asc_A 117 DSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW 177 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEE
T ss_pred ceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeE
Confidence 35888888762111111111 122222 3566777763311 124689999987653
No 372
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=55.95 E-value=3.1e+02 Score=35.57 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=74.6
Q ss_pred CCCCEEEEEeCC----CcEEEEECCCCCceeee-c-----cC--CCCeeEEEeeecCCCcEEEEec-C------CcEEEe
Q 000177 1519 GDSSHIAVGSHT----KELKIFDSNSSSPLESC-T-----SH--QAPVTLVQSHLSGETQLLLSSS-S------QDVHLW 1579 (1922)
Q Consensus 1519 PDG~lLASGS~D----GtIkIWDl~tgk~l~tL-~-----gH--ss~VtsLq~afSpDG~lLaSSs-D------gtVkLW 1579 (1922)
.++.+++.|+.+ ..+.+||..+++....- . .. ...-..+ .+..++++++.|. + ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~--~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFT--TISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEE--EETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEE--EEccCCEEEEEcCCCCCCCccccEEEE
Confidence 456677777754 46888888776543322 1 01 1111122 2222666766642 2 357888
Q ss_pred ccCCCCCCcceEecc---ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccc-cccccCCCCcceEEEEcCC
Q 000177 1580 NASSIAGGPMHSFEG---CKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDT-SVNLTGRGHAYSQIHFSPS 1655 (1922)
Q Consensus 1580 Dl~t~~gk~l~tf~g---h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~-s~~~~~~gh~~~vVaFSPd 1655 (1922)
|..+.....+..+.. ..+++...+++.++.|+..... .+.+||..+.+-.. +... .......+| ..+.+..+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~-~~~~g~~p~~r~~~--~a~v~~~~ 549 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIFKD-VTPKDEFFQNSLVS--AGLEFDPV 549 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTEEEE-CCCSSGGGGSCCBS--CEEEEETT
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCceEE-ccCCCCCCCcccce--eEEEEeCC
Confidence 887621111111111 1233333478888888543333 79999998865432 2210 011111122 22444554
Q ss_pred -CCeEeecc------------EEEEcCCCc
Q 000177 1656 -DTMLLWNG------------ILWDRRNSV 1672 (1922)
Q Consensus 1656 -G~lLaSgg------------rLWDlrtgk 1672 (1922)
+++++.+| ..||+.+.+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 66666665 467877665
No 373
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=55.28 E-value=90 Score=38.80 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=89.0
Q ss_pred HHHHhhhchhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhh-hhHHHHhccccchhhhcc
Q 000177 544 CIQCLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHR-KFAALFVDRGGMQKLLAV 622 (1922)
Q Consensus 544 ~l~~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~Hk-KfA~eFV~~gGlq~LL~v 622 (1922)
+|.||+--.+ +....+...+++..+..||.. .+..+...+++.|..|.+|. .....+++.|+++.|+.+
T Consensus 255 aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~~--------~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 324 (510)
T 3ul1_B 255 AISYLTDGPN--ERIEMVVKKGVVPQLVKLLGA--------TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 324 (510)
T ss_dssp HHHHHTSSCH--HHHHHHHTTTCHHHHHHHHTC--------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-C
T ss_pred HHHHHhhchh--hhHHHHHhcccchhhhhhhcC--------CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHH
Confidence 4555554332 223345677788887777753 23345677899999998765 556678899999988776
Q ss_pred CCCcccccccceeeehhcchhhHHHHhhcCChhhH-----HHHHHHHHHHHhcCChHHhhhHhhHhhhhcch--hHHHHH
Q 000177 623 PRNNQTFFGLSSCLFTIGSLQGIMERVCALPTDVV-----HQLVELAIQLLECTQDQARKNAALFFAAAFVF--RAIIDA 695 (1922)
Q Consensus 623 PR~s~a~tgvS~Clyylay~~~aMERvC~lp~~vl-----~~lV~yaLwLLecshds~r~~A~mFF~~sf~F--r~il~~ 695 (1922)
=+.+-...= -.+. -++-.+|.-..+.. ..++..-+.+|.+++...|+.|+..++-.... ...+.+
T Consensus 325 L~~~~~~v~-~~A~-------~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~ 396 (510)
T 3ul1_B 325 LTNPKTNIQ-KEAT-------WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVY 396 (510)
T ss_dssp TTCSSHHHH-HHHH-------HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred hcCCCHHHH-HHHH-------HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 554321110 0011 12222333222221 13667778899999999999998877643332 223344
Q ss_pred hhhcccHHHHHHHHh
Q 000177 696 FDAQDGLQKLLGLLN 710 (1922)
Q Consensus 696 FD~~dGLrkL~N~i~ 710 (1922)
+=.++++..|+++|.
T Consensus 397 L~~~g~i~~L~~LL~ 411 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLS 411 (510)
T ss_dssp HHHTTCHHHHHHGGG
T ss_pred HHHCCCHHHHHHHhc
Confidence 445688888888764
No 374
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=55.01 E-value=2.7e+02 Score=31.28 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=49.7
Q ss_pred CCEEEEEeCC----CcEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEec-C-----CcEEEeccCCCCCCc
Q 000177 1521 SSHIAVGSHT----KELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSSS-S-----QDVHLWNASSIAGGP 1588 (1922)
Q Consensus 1521 G~lLASGS~D----GtIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSSs-D-----gtVkLWDl~t~~gk~ 1588 (1922)
+.+++.|+.+ ..+.+||+.+.+.... +......-..+ .+ ++++++.|. + ..+.+||..+.....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~ 91 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMV--YM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS 91 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEE--EE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence 3445555543 3577888876643221 11111111112 22 666776642 2 357888887621111
Q ss_pred ceEec----cceeEEEcCCCCEEEEeecCCCC--CeEEEEECCCCcee
Q 000177 1589 MHSFE----GCKAARFSNSGNLFAALPTETSD--RGILLYDIQTYQLE 1630 (1922)
Q Consensus 1589 l~tf~----gh~sVaFSPDG~~LaSgS~~S~D--gtIrIWDlrTgk~i 1630 (1922)
+..+. .|..+.+ +++.++.|+..... ..+.+||+.+.+-.
T Consensus 92 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 92 VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 11111 1233333 56777777432211 35788998876543
No 375
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=54.30 E-value=14 Score=46.04 Aligned_cols=271 Identities=15% Similarity=0.099 Sum_probs=151.5
Q ss_pred HhhhchhHHHHHhhhhhccchHHHHHHHhhhcchh---hccccccchhhHHHHHHHHhhhhhhHHHHh-cccc-chhhhc
Q 000177 547 CLETLGEYVEVLGPVLHEKGVDVCLALLQRSSKYE---EESKVAMLLPDVMKLICALAAHRKFAALFV-DRGG-MQKLLA 621 (1922)
Q Consensus 547 ~L~~lGEYqE~L~~~~~~~~~~l~l~ll~~~~~~~---~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV-~~gG-lq~LL~ 621 (1922)
+|.-++..-|.=..+++.+++..++.||....+.. .......+.++|.+.|..|..++.-...+| ..+| |..|+.
T Consensus 171 aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~ 250 (458)
T 3nmz_A 171 VLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 250 (458)
T ss_dssp HHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHH
Confidence 34444433333335678899999999985311100 011234578999999999998887555555 5777 888777
Q ss_pred cCCCc--ccccccceeeehhcch--hhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHh-hHhhhhcchhHHHHHh
Q 000177 622 VPRNN--QTFFGLSSCLFTIGSL--QGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAA-LFFAAAFVFRAIIDAF 696 (1922)
Q Consensus 622 vPR~s--~a~tgvS~Clyylay~--~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~-mFF~~sf~Fr~il~~F 696 (1922)
+=+.. ..-.-...+|.+|++. .+.-+.|.. ...+..||+. |+.++++..+.+|+ .-+.++......-..|
T Consensus 251 LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~--~GaI~~LV~l---Ll~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVKALMEC---ALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH--TTHHHHHHHH---HTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCCHHHHHHH---HhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 65532 1122334567788875 222233332 2333333332 24666777777764 3344554222222333
Q ss_pred h-hcccHHHHHHHHhhhhccccccCCCccccCCccCcCCCCCChhhhchhhhHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 000177 697 D-AQDGLQKLLGLLNDAASVRSGVNAGAVGLSSSTSLRNDRSPPEVLTSSEKQIAYHTCVALRQYFRAHLLLLVDSIRPN 775 (1922)
Q Consensus 697 D-~~dGLrkL~N~i~~l~~l~~~~~~~~~~~~~~~~~~~d~~~~e~~~~s~rQ~~~h~c~aLR~Yf~aHL~~~v~~~~~~ 775 (1922)
- ..+|+.-|+.+|.. +.. + .. -.+...+|.+|+.- -.|+.
T Consensus 326 ~~~~Gal~~Lv~LL~~------~~~----------------~-~~------~~v~~~A~~aL~nL-s~~~a--------- 366 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTY------RSQ----------------T-NT------LAIIESGGGILRNV-SSLIA--------- 366 (458)
T ss_dssp HHSTTHHHHHHHHTTC------CCS----------------S-ST------THHHHHHHHHHHHH-HHHHT---------
T ss_pred HHhcCcHHHHHHHhcC------CCC----------------c-ch------HHHHHHHHHHHHHH-Hhccc---------
Confidence 3 57889988888751 110 0 00 13667788787641 11110
Q ss_pred CCCCCCCCCCCCcCcccccccCCHHHHHHHHHHhhcccccCcccccCcchHHHHHHhcCChHHHHhhhcCCCchhhHHHH
Q 000177 776 KSNRSAGRNIPNVRAAYKPLDISNEAIDAVFLQLQKDRKLGPALVRTRWPAVDRFLSLNGHITLLELCQAPPVERYLHDL 855 (1922)
Q Consensus 776 ~~~~s~~~~~~~~~~~~k~~~~s~e~~~~~~~~l~~~r~~~~~~~~~~W~pvd~f~~l~g~~~lL~l~~~~~~~r~~~e~ 855 (1922)
-+.+..+ .+...|++..|++++.... .++
T Consensus 367 ---------------------~~~~~~~-------------------------~i~~~G~i~~Lv~LL~~~~-----~~v 395 (458)
T 3nmz_A 367 ---------------------TNEDHRQ-------------------------ILRENNCLQTLLQHLKSHS-----LTI 395 (458)
T ss_dssp ---------------------TCHHHHH-------------------------HHHHTTHHHHHHHHSSCSC-----HHH
T ss_pred ---------------------CCHHHHH-------------------------HHHHcccHHHHHHHHcCCC-----hHH
Confidence 0122222 2334477888888887532 235
Q ss_pred HHHHhccceEEEe-ecchhhhhhhccccCCccchHHHHhhhhccCCCCCccchhHHHHHhhhcccCCC
Q 000177 856 LQYALGVLHIVTL-VPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEIIQPALNVLINLVCPPP 922 (1922)
Q Consensus 856 v~~aL~vL~i~tv-vP~~r~~l~~~~~s~~~~Gi~ilL~~a~~g~~~~D~ev~~~AL~Vl~ncVc~P~ 922 (1922)
.+.|..+|.-++. -|..+..+.+. .+|..|+.... . .++++++.|+.+|.|+...-+
T Consensus 396 ~~~A~~aL~nLa~~~~~~~~~i~~~------G~I~~Lv~LL~-s---~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 396 VSNACGTLWNLSARNPKDQEALWDM------GAVSMLKNLIH-S---KHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHH------THHHHHHTTTT-C---SSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHh-C---CCHHHHHHHHHHHHHHHcCCH
Confidence 5666666665553 35555555443 25677776664 1 378899999999999875443
No 376
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=52.20 E-value=32 Score=45.89 Aligned_cols=155 Identities=14% Similarity=0.173 Sum_probs=98.8
Q ss_pred HHHHHHHHhhhch-hHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhc-cccch
Q 000177 540 REKYCIQCLETLG-EYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVD-RGGMQ 617 (1922)
Q Consensus 540 ~q~~~l~~L~~lG-EYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~-~gGlq 617 (1922)
..-..|.+|+... ++.+ .+.++++++-+..||.. ....+--.|++.|+.|..|...-..|++ .|+++
T Consensus 600 eAl~AL~NLa~~~d~~~~---~Ii~aG~l~~Lv~LL~s--------~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~ 668 (810)
T 3now_A 600 ESLMALTNLASMNESVRQ---RIIKEQGVSKIEYYLME--------DHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668 (810)
T ss_dssp HHHHHHHHHTTSCHHHHH---HHHHTTHHHHHHHHHHS--------CCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHH
T ss_pred HHHHHHHHHhcCCHHHHH---HHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHH
Confidence 3445777787775 4444 46788999998888864 1223456789999999999998889996 78888
Q ss_pred hhhccCCCccccc--ccceeeehhcc-hhhHHHHhhcCChhhHHHHHHHHHHHHhcCChHHhhhHhhHhhhhc-chhHHH
Q 000177 618 KLLAVPRNNQTFF--GLSSCLFTIGS-LQGIMERVCALPTDVVHQLVELAIQLLECTQDQARKNAALFFAAAF-VFRAII 693 (1922)
Q Consensus 618 ~LL~vPR~s~a~t--gvS~Clyylay-~~~aMERvC~lp~~vl~~lV~yaLwLLecshds~r~~A~mFF~~sf-~Fr~il 693 (1922)
.|+.+-...-..+ -...+|-+|+. .++....|... .. .+..-+.||.++.+.-+..|+.-++-.. .=+...
T Consensus 669 ~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g----~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~ 743 (810)
T 3now_A 669 FLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI-AS----WLDILHTLIANPSPAVQHRGIVIILNMINAGEEIA 743 (810)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TT----HHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cC----CHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 7766655432111 11234445554 34444444432 22 4455557788888888877765554332 234455
Q ss_pred HHhhhcccHHHHHHHHh
Q 000177 694 DAFDAQDGLQKLLGLLN 710 (1922)
Q Consensus 694 ~~FD~~dGLrkL~N~i~ 710 (1922)
.++-..+|+..|.+++.
T Consensus 744 ~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 744 KKLFETDIMELLSGLGQ 760 (810)
T ss_dssp HHHHTSTHHHHHTTSCC
T ss_pred HHHHHCCCHHHHHHHHh
Confidence 66667788888887764
No 377
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=51.29 E-value=14 Score=45.43 Aligned_cols=136 Identities=11% Similarity=0.090 Sum_probs=84.6
Q ss_pred hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhh-hhhHHHHhccccchhhhccCCCc---cccccccee
Q 000177 560 PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAH-RKFAALFVDRGGMQKLLAVPRNN---QTFFGLSSC 635 (1922)
Q Consensus 560 ~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~H-kKfA~eFV~~gGlq~LL~vPR~s---~a~tgvS~C 635 (1922)
.+.+.+++..+..+|.. .+..+-+.|.+.|..|..| ...-..+++.|||+.|+++=+.+ ..-.-...|
T Consensus 39 ~i~~~g~i~~Lv~lL~s--------~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~a 110 (457)
T 1xm9_A 39 QVYQLGGICKLVDLLRS--------PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGL 110 (457)
T ss_dssp HHHHTTHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHH
Confidence 46688899888888753 2334678999999999988 77777788999999999887732 122234567
Q ss_pred eehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhc--------CChHH--------hhhHh-hHhhhhcchhHHHHHhhh
Q 000177 636 LFTIGSLQGIMERVCALPTDVVHQLVELAIQLLEC--------TQDQA--------RKNAA-LFFAAAFVFRAIIDAFDA 698 (1922)
Q Consensus 636 lyylay~~~aMERvC~lp~~vl~~lV~yaLwLLec--------shds~--------r~~A~-mFF~~sf~Fr~il~~FD~ 698 (1922)
|+.|+.+++.-+.|. ...|..-+.||.. ++... ..+|+ .++.++-. +...+.+=.
T Consensus 111 L~nLa~~~~~~~~i~-------~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~ 182 (457)
T 1xm9_A 111 LWNLSSTDELKEELI-------ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA-DAGRQTMRN 182 (457)
T ss_dssp HHHHHTSSSTHHHHH-------HHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTT
T ss_pred HHHHhcCHHhHHHHH-------hccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC-HHHHHHHHH
Confidence 778887754433333 2344444555621 11111 11343 34444544 444444444
Q ss_pred c-ccHHHHHHHHhh
Q 000177 699 Q-DGLQKLLGLLND 711 (1922)
Q Consensus 699 ~-dGLrkL~N~i~~ 711 (1922)
. +++..|+.+|..
T Consensus 183 ~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 183 YSGLIDSLMAYVQN 196 (457)
T ss_dssp STTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHh
Confidence 4 889999999874
No 378
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=49.62 E-value=3.3e+02 Score=30.83 Aligned_cols=171 Identities=11% Similarity=0.148 Sum_probs=76.5
Q ss_pred EEEEEeCCCcEEEEECCCCCceee-eccCCC-CeeEEEeeecCCCcEEEEec-----CC-------cEEEeccCCCCCCc
Q 000177 1523 HIAVGSHTKELKIFDSNSSSPLES-CTSHQA-PVTLVQSHLSGETQLLLSSS-----SQ-------DVHLWNASSIAGGP 1588 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~tgk~l~t-L~gHss-~VtsLq~afSpDG~lLaSSs-----Dg-------tVkLWDl~t~~gk~ 1588 (1922)
+++.|+. .+.+||..+++.... +..... .-.++ ...++.+++.|. ++ .+.+||..+.....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~---~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~ 92 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSI---VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG 92 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEE---ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEE---EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE
Confidence 3344443 377888877664331 111111 11222 234666666643 11 16677776511111
Q ss_pred ceEec----cceeEEEcCCCCEEEEeecCC----CCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEe
Q 000177 1589 MHSFE----GCKAARFSNSGNLFAALPTET----SDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLL 1660 (1922)
Q Consensus 1589 l~tf~----gh~sVaFSPDG~~LaSgS~~S----~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLa 1660 (1922)
+..+. .|..+.+ +++.++.|+... .-..+.+||+.+.+-.. +.+ ......+|. ++ ..++++++
T Consensus 93 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~--~p~~r~~~~---~~-~~~~~iyv 163 (318)
T 2woz_A 93 LPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKN--LPIKVYGHN---VI-SHNGMIYC 163 (318)
T ss_dssp CSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECC--CSSCEESCE---EE-EETTEEEE
T ss_pred CCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCC--CCCcccccE---EE-EECCEEEE
Confidence 11111 1222333 567777764321 11458889998765433 211 111011222 22 24667777
Q ss_pred ecc-----------EEEEcCCCcc--eeeeccCCCceEEEEecCCCEEEEEe----------EEEecCCCe
Q 000177 1661 WNG-----------ILWDRRNSVP--VHRFDQFTDHGGGGFHPAGNEVIINS----------EVWDLRKFR 1708 (1922)
Q Consensus 1661 Sgg-----------rLWDlrtgk~--I~kf~gh~~~VsVaFSPdG~~LASGS----------eIWDLrTgk 1708 (1922)
.+| .+||+.+.+- +..+.......+++. -+++.++.|+ .+||+.+.+
T Consensus 164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 665 5677766531 211111111113332 3566666665 267877654
No 379
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=48.56 E-value=90 Score=44.27 Aligned_cols=132 Identities=12% Similarity=0.140 Sum_probs=75.4
Q ss_pred CceeeEEecCCC---CCCEEEEEEcCCCCEEEEEe-------CCCcEEEEECCCCCceeeeccCCCCeeEEEee-ecCCC
Q 000177 1497 RFRPWRTCRDDA---GALLTCITFLGDSSHIAVGS-------HTKELKIFDSNSSSPLESCTSHQAPVTLVQSH-LSGET 1565 (1922)
Q Consensus 1497 rfrpirtLrgH~---d~~Vt~LaFSPDG~lLASGS-------~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~a-fSpDG 1565 (1922)
...|.+.|.-|. +..|..-..+++.+|++..| -.|.+.+|.++.+ ..+.+.||...-..+... ..+..
T Consensus 135 ~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~ 213 (1630)
T 1xi4_A 135 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEES 213 (1630)
T ss_pred CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCc
Confidence 345555555442 14466667778888876433 4588999998644 335567776655444221 11122
Q ss_pred cEEEEec----CCcEEEeccCCC-CCCcceEecc-------------ceeEEEcCCCCEEEEeecCCCCCeEEEEECCCC
Q 000177 1566 QLLLSSS----SQDVHLWNASSI-AGGPMHSFEG-------------CKAARFSNSGNLFAALPTETSDRGILLYDIQTY 1627 (1922)
Q Consensus 1566 ~lLaSSs----DgtVkLWDl~t~-~gk~l~tf~g-------------h~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTg 1627 (1922)
++++... .++++|.++... .+.+....+. ..++..++.-..+... +.-|.|++||+.|+
T Consensus 214 ~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i---tk~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI---TKYGYIHLYDLETG 290 (1630)
T ss_pred eEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE---ecCceEEEEecccc
Confidence 3333332 368888888552 1222221111 1345566654455555 67799999999999
Q ss_pred ceeee
Q 000177 1628 QLEAK 1632 (1922)
Q Consensus 1628 k~i~t 1632 (1922)
.++..
T Consensus 291 ~~i~~ 295 (1630)
T 1xi4_A 291 TCIYM 295 (1630)
T ss_pred hhhhh
Confidence 88754
No 380
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=46.44 E-value=16 Score=35.45 Aligned_cols=30 Identities=30% Similarity=0.167 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHcCCC
Q 000177 1169 RELLLLIHEHLQASGLVTTAAQLLKEAQLT 1198 (1922)
Q Consensus 1169 ~ELL~LI~~HL~~~GL~~TA~~L~kEA~L~ 1198 (1922)
+-+..||.|.|+..||+-|.++++-|+|++
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 557899999999999999999999999993
No 381
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=45.84 E-value=4.1 Score=35.42 Aligned_cols=10 Identities=70% Similarity=1.225 Sum_probs=5.7
Q ss_pred CccccCCCCC
Q 000177 12 APVLEGGGGE 21 (1922)
Q Consensus 12 ~~~~~~~~~~ 21 (1922)
|-+||||||+
T Consensus 23 aklleggggg 32 (62)
T 2i7u_A 23 AKLLEGGGGG 32 (62)
T ss_dssp HHHHHCSSCS
T ss_pred HHHHhcCCCC
Confidence 3467776543
No 382
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=43.68 E-value=4e+02 Score=30.08 Aligned_cols=101 Identities=9% Similarity=0.085 Sum_probs=49.2
Q ss_pred EEEEEeCCCcEEEEECCCCCcee-eeccCCCCeeEEEeeecCCCcEEEEec-----CC-------cEEEeccCCCCCCcc
Q 000177 1523 HIAVGSHTKELKIFDSNSSSPLE-SCTSHQAPVTLVQSHLSGETQLLLSSS-----SQ-------DVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1523 lLASGS~DGtIkIWDl~tgk~l~-tL~gHss~VtsLq~afSpDG~lLaSSs-----Dg-------tVkLWDl~t~~gk~l 1589 (1922)
+++.|+ ..+.+||..+++... .+.......... ....++++++.|. ++ .+.+||..+...+.+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVS--LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEE--EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceE--EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 445555 578899998776432 111111111111 2234666666632 11 266778765111111
Q ss_pred eEec----cceeEEEcCCCCEEEEeecC-----CCCCeEEEEECCCCce
Q 000177 1590 HSFE----GCKAARFSNSGNLFAALPTE-----TSDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1590 ~tf~----gh~sVaFSPDG~~LaSgS~~-----S~DgtIrIWDlrTgk~ 1629 (1922)
..+. .|..+.+ +++.++.|+.. ..-..+.+||..+.+-
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W 129 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW 129 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE
Confidence 1111 1222333 56667776421 1235689999987653
No 383
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=38.57 E-value=5e+02 Score=29.72 Aligned_cols=137 Identities=9% Similarity=0.062 Sum_probs=71.4
Q ss_pred CEEEEEeCCCcEEEEECCCCCc-----eeeeccC--CCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCc----ce
Q 000177 1522 SHIAVGSHTKELKIFDSNSSSP-----LESCTSH--QAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGP----MH 1590 (1922)
Q Consensus 1522 ~lLASGS~DGtIkIWDl~tgk~-----l~tL~gH--ss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~----l~ 1590 (1922)
.+|++-..| +|+.=....+.. ..+-.++ =..+..+ +|+|+|.+.+. .++.+.-.+..+..... -.
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~l--af~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFL--FLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEE--EECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeE--EECCCccEEEE-eCCeEEEECCCCCCccccccccc
Confidence 455556666 555444443331 1111222 2467788 89999998888 77766555553311110 01
Q ss_pred Ee-----ccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCCeEeecc-E
Q 000177 1591 SF-----EGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDTMLLWNG-I 1664 (1922)
Q Consensus 1591 tf-----~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~lLaSgg-r 1664 (1922)
.+ .+-..+.|.|+|.+.++. |+.|.-++--+.....-+.+....-..--.....+.|.|+|.+.+..+ +
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LYav~-----dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~dg~ 155 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLYAVS-----KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQQ 155 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEEEEE-----TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETTE
T ss_pred EecccccccceEEEECCCCCEEEeC-----CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEeCCc
Confidence 11 112678999999987773 377776665332221111100000000012334589999998877545 6
Q ss_pred EEE
Q 000177 1665 LWD 1667 (1922)
Q Consensus 1665 LWD 1667 (1922)
+|-
T Consensus 156 lyr 158 (236)
T 1tl2_A 156 FYK 158 (236)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
No 384
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=37.84 E-value=3.3e+02 Score=30.84 Aligned_cols=108 Identities=10% Similarity=0.142 Sum_probs=53.1
Q ss_pred EEcCCCCEEEEEeC----CC-------cEEEEECCCCCceee--eccCCCCeeEEEeeecCCCcEEEEe-cC-------C
Q 000177 1516 TFLGDSSHIAVGSH----TK-------ELKIFDSNSSSPLES--CTSHQAPVTLVQSHLSGETQLLLSS-SS-------Q 1574 (1922)
Q Consensus 1516 aFSPDG~lLASGS~----DG-------tIkIWDl~tgk~l~t--L~gHss~VtsLq~afSpDG~lLaSS-sD-------g 1574 (1922)
....++.+++.|+. ++ .+.+||..+++.... +......-..+ .+ ++++++.| .+ .
T Consensus 52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~--~~--~~~iyv~GG~~~~~~~~~~ 127 (318)
T 2woz_A 52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLG--EV--DDKIYVVAGKDLQTEASLD 127 (318)
T ss_dssp EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEE--EE--TTEEEEEEEEBTTTCCEEE
T ss_pred EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceE--EE--CCEEEEEcCccCCCCcccc
Confidence 34457788888883 12 177888876654321 11111111112 22 56666664 32 2
Q ss_pred cEEEeccCCCCCCcceEe----ccceeEEEcCCCCEEEEeecCC---CCCeEEEEECCCCce
Q 000177 1575 DVHLWNASSIAGGPMHSF----EGCKAARFSNSGNLFAALPTET---SDRGILLYDIQTYQL 1629 (1922)
Q Consensus 1575 tVkLWDl~t~~gk~l~tf----~gh~sVaFSPDG~~LaSgS~~S---~DgtIrIWDlrTgk~ 1629 (1922)
.+.+||..+.....+..+ .+|..+. .+++.++.|+... .-..+.+||+.+.+-
T Consensus 128 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 128 SVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp EEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred eEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 477888875211111111 1233222 4567777763211 124589999988654
No 385
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=34.30 E-value=8.6e+02 Score=31.23 Aligned_cols=206 Identities=10% Similarity=0.098 Sum_probs=106.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeeeccCCCCeeEEEeeecCCCcEEEEecCCcEEEeccCCCCCCcc
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESCTSHQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASSIAGGPM 1589 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL~gHss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t~~gk~l 1589 (1922)
..|+++....+| .|..|+.+| +..||..+.+...........|.++ .. .++.+.+++.+ -+..||..+ .+ +
T Consensus 63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i--~~-~~g~lWigt~~-Gl~~~~~~~--~~-~ 133 (758)
T 3ott_A 63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTM--AL-QGDTLWLGALN-GLYTYQLQS--RK-L 133 (758)
T ss_dssp SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEE--EE-ETTEEEEEETT-EEEEEETTT--CC-E
T ss_pred ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEE--Ee-cCCcEEEEcCC-cceeEeCCC--Ce-E
Confidence 568998877766 567777766 7889987654322111123457776 33 36666665544 677888765 32 2
Q ss_pred eEec---------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEEcCCCC--e
Q 000177 1590 HSFE---------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHFSPSDT--M 1658 (1922)
Q Consensus 1590 ~tf~---------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaFSPdG~--l 1658 (1922)
..+. .+.++....+|...+.. . +-+..||..+++... +..+. ........+..+...+++. +
T Consensus 134 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt----~-~Gl~~~~~~~~~~~~-~~~~~-~~~~~~~~i~~i~~d~~~~~lW 206 (758)
T 3ott_A 134 TSFDTRRNGLPNNTIYSIIRTKDNQIYVGT----Y-NGLCRYIPSNGKFEG-IPLPV-HSSQSNLFVNSLLEDTTRQCVW 206 (758)
T ss_dssp EEECHHHHCCSCSCEEEEEECTTCCEEEEE----T-TEEEEEETTTTEEEE-ECCCC-CTTCSSCCEEEEEEETTTTEEE
T ss_pred EEeccCCCCcCCCeEEEEEEcCCCCEEEEe----C-CCHhhCccCCCceEE-ecCCC-ccccccceeEEEEEECCCCEEE
Confidence 3331 13556666677766653 2 347788987765432 22110 0000111233466666655 3
Q ss_pred Eeecc--EEEEcCCCcceeeecc-CCCce-EEEEecCCCEEEEEe---EEEecCCCeEEEEEc-------CC---CceeE
Q 000177 1659 LLWNG--ILWDRRNSVPVHRFDQ-FTDHG-GGGFHPAGNEVIINS---EVWDLRKFRLLRSVP-------SL---DQTTI 1721 (1922)
Q Consensus 1659 LaSgg--rLWDlrtgk~I~kf~g-h~~~V-sVaFSPdG~~LASGS---eIWDLrTgklL~tl~-------gH---~~~sV 1721 (1922)
+.+.+ ..+|..+++.. .+.. ....+ ++...++|...+... -+++..+.+.. .+. +. ...++
T Consensus 207 igt~~Gl~~~~~~~~~~~-~~~~l~~~~i~~i~~d~~g~lWigT~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i 284 (758)
T 3ott_A 207 IGTEGYLFQYFPSTGQIK-QTEAFHNNSIKSLALDGNGDLLAGTDNGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNI 284 (758)
T ss_dssp EEEEEEEEEEETTTTEEE-EEEEEEEEEEEEEEECTTCCEEEEETTEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEE
T ss_pred EEECCCCeEEcCCCCeEE-eccCCCCCeEEEEEEcCCCCEEEEeCCceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEE
Confidence 44433 66777665432 2221 12234 666667776554332 25666554332 221 01 11466
Q ss_pred EEccCCCEEEEE
Q 000177 1722 TFNARGDVIYAI 1733 (1922)
Q Consensus 1722 aFSPdG~~LaSg 1733 (1922)
....+|.+-++.
T Consensus 285 ~~D~~g~lWiGT 296 (758)
T 3ott_A 285 FADQEHNIWLGT 296 (758)
T ss_dssp EECTTCCEEEEE
T ss_pred EEcCCCCEEEEe
Confidence 666666655544
No 386
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.84 E-value=96 Score=42.08 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=33.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee
Q 000177 1511 LLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC 1547 (1922)
Q Consensus 1511 ~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL 1547 (1922)
.+.++...++..+|+|-+.|+++|||++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 5778888888999999999999999999999988765
No 387
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=31.70 E-value=1.3e+02 Score=42.74 Aligned_cols=114 Identities=11% Similarity=0.182 Sum_probs=70.9
Q ss_pred CCcEEEeccCCCCCCcceEeccceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceEEEE
Q 000177 1573 SQDVHLWNASSIAGGPMHSFEGCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQIHF 1652 (1922)
Q Consensus 1573 DgtVkLWDl~t~~gk~l~tf~gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~vVaF 1652 (1922)
..+|.|.|+..+ ..+.+.--..-+...||..+.|+.- ...++.|||+.+.+.+.++. ....+.--.|
T Consensus 47 ~~~vvIidl~~~-~~~~rrpi~AdsAIMnP~~~iiALr----ag~~lQiFnl~~k~klks~~--------~~e~VvfWkW 113 (1630)
T 1xi4_A 47 QAQVVIIDMNDP-SNPIRRPISADSAIMNPASKVIALK----AGKTLQIFNIEMKSKMKAHT--------MTDDVTFWKW 113 (1630)
T ss_pred CceEEEEECCCC-CCcccccccchhhccCCCcceEEEe----cCCeEEEeehHHhhhhcccc--------cCCCceEEEe
Confidence 346888888762 2222222223556689988877764 36889999999988777664 1111112344
Q ss_pred cCCCCe-Eeecc--EEEEcCC-CcceeeeccCCC-----ceEEEEecCCCEEEEEe
Q 000177 1653 SPSDTM-LLWNG--ILWDRRN-SVPVHRFDQFTD-----HGGGGFHPAGNEVIINS 1699 (1922)
Q Consensus 1653 SPdG~l-LaSgg--rLWDlrt-gk~I~kf~gh~~-----~VsVaFSPdG~~LASGS 1699 (1922)
-....+ |+|.. .-|++.. ..|++.|+.|.. .++-..+++.+|++..+
T Consensus 114 is~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~g 169 (1630)
T 1xi4_A 114 ISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG 169 (1630)
T ss_pred cCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEe
Confidence 444433 44555 8899863 457777877632 23667788888887666
No 388
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=29.51 E-value=6.9e+02 Score=28.58 Aligned_cols=21 Identities=5% Similarity=-0.013 Sum_probs=13.7
Q ss_pred CCCEEEEEeCC-CcEEEEECCC
Q 000177 1520 DSSHIAVGSHT-KELKIFDSNS 1540 (1922)
Q Consensus 1520 DG~lLASGS~D-GtIkIWDl~t 1540 (1922)
++.+++.|+.+ ..+.+||+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTS
T ss_pred CCEEEEEeCcCCCeEEEEcccc
Confidence 55666666643 4688888864
No 389
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=28.38 E-value=58 Score=39.96 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=50.4
Q ss_pred HHHHhhhc-hhHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhhcc
Q 000177 544 CIQCLETL-GEYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAV 622 (1922)
Q Consensus 544 ~l~~L~~l-GEYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~v 622 (1922)
.|+-|..- -+... .+.+.+++..++.+|.+. .+..+...+.+.|..|..|...-..+++ ||++.|+.+
T Consensus 67 aL~nLa~~~~~~k~---~i~~~G~i~~Lv~lL~~~-------~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~l 135 (457)
T 1xm9_A 67 ALRNLVFRSTTNKL---ETRRQNGIREAVSLLRRT-------GNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADR 135 (457)
T ss_dssp HHHHHHSSCHHHHH---HHHHTTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHH
T ss_pred HHHHHhcCCHHHHH---HHHHcCCHHHHHHHHhhC-------CCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHH
Confidence 44444443 34444 466899999999998631 2335677888999999988887778899 999999887
Q ss_pred C
Q 000177 623 P 623 (1922)
Q Consensus 623 P 623 (1922)
-
T Consensus 136 l 136 (457)
T 1xm9_A 136 V 136 (457)
T ss_dssp T
T ss_pred H
Confidence 6
No 390
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=28.05 E-value=4.4e+02 Score=25.87 Aligned_cols=49 Identities=14% Similarity=0.344 Sum_probs=34.1
Q ss_pred eEEEEcCCCCeEeecc---EEEEcCCCcceeeeccCCCceEEEEecCCCEEEEEeEEEe
Q 000177 1648 SQIHFSPSDTMLLWNG---ILWDRRNSVPVHRFDQFTDHGGGGFHPAGNEVIINSEVWD 1703 (1922)
Q Consensus 1648 ~vVaFSPdG~lLaSgg---rLWDlrtgk~I~kf~gh~~~VsVaFSPdG~~LASGSeIWD 1703 (1922)
..+.+..+|.+++... .+|...+.. ......+...++|++++.++.||.
T Consensus 53 ~~L~l~~dGnLvL~d~~~~~vWss~t~~-------~~~~~~l~L~ddGNlVly~~~~W~ 104 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSGRSLWASHSTR-------GSGNYILILQDDGNVIIYGSDIWS 104 (105)
T ss_dssp CEEEECTTSCEEEECTTCCEEEECCCCC-------CSSCEEEEECTTSCEEEEESEEEE
T ss_pred EEEEEeCCccEEEECCCcEEEEEecCCC-------CCCCEEEEEeCCCeEEEECCcEec
Confidence 3488899999988765 788755421 112235677889999988877885
No 391
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=27.26 E-value=74 Score=36.09 Aligned_cols=160 Identities=14% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHhhhch-hHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhh-hhhhHHHHhccccchh
Q 000177 541 EKYCIQCLETLG-EYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAA-HRKFAALFVDRGGMQK 618 (1922)
Q Consensus 541 q~~~l~~L~~lG-EYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~-HkKfA~eFV~~gGlq~ 618 (1922)
|..-..+|.-+- +-.+.=..+.+.+++-.+..||.. .+..+-+.|.+.|..|.. +..--...++.|||..
T Consensus 27 q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s--------~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~ 98 (233)
T 3tt9_A 27 ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV--------QNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPR 98 (233)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC--------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC--------CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHH
Q ss_pred hhccCC-Cccccc--ccceeeehhcchhhHHHHhhcCChhhHHHHHHHHHHHHhcC------------ChHHhhhHhhH-
Q 000177 619 LLAVPR-NNQTFF--GLSSCLFTIGSLQGIMERVCALPTDVVHQLVELAIQLLECT------------QDQARKNAALF- 682 (1922)
Q Consensus 619 LL~vPR-~s~a~t--gvS~Clyylay~~~aMERvC~lp~~vl~~lV~yaLwLLecs------------hds~r~~A~mF- 682 (1922)
|+++=+ .....+ ....+||.|+.++..-++|.. +-+..||+..+-.+... ....+.||+..
T Consensus 99 Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~---~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L 175 (233)
T 3tt9_A 99 LLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT---EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCL 175 (233)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH---HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh---ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHH
Q ss_pred hhhhcchhHHHHHhhhcccH-HHHHHHHhh
Q 000177 683 FAAAFVFRAIIDAFDAQDGL-QKLLGLLND 711 (1922)
Q Consensus 683 F~~sf~Fr~il~~FD~~dGL-rkL~N~i~~ 711 (1922)
+.+|..=...=...=..+|| ..|+.++..
T Consensus 176 ~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 176 RNMSSAGADGRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp HHHTTSCHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHCCCcHHHHHHHHHh
No 392
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=26.71 E-value=25 Score=42.26 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=46.7
Q ss_pred HHHHHhcCChHHHHhhhcCCCchhhHHHHHHHHhccceEEEeecchhhhhhhccccCCccchHHHHhhhhccCCCCCccc
Q 000177 827 VDRFLSLNGHITLLELCQAPPVERYLHDLLQYALGVLHIVTLVPNSRKMIVNATLSNNHTGIAVILDAANAVSSYVDPEI 906 (1922)
Q Consensus 827 vd~f~~l~g~~~lL~l~~~~~~~r~~~e~v~~aL~vL~i~tvvP~~r~~l~~~~~s~~~~Gi~ilL~~a~~g~~~~D~ev 906 (1922)
+.+|+..+|+..|+.++..+ . .++.-|+|-.|.-+-........+. ++...|..|....+ -.++-|
T Consensus 153 a~EFI~~~GL~~Li~vi~~~-~----gN~q~Y~L~AL~~LM~~v~Gm~gvv-----s~~~fI~~lyslv~----s~~~~V 218 (339)
T 3dad_A 153 VPEFVHSEGLSCLIRVGAAA-D----HNYQSYILRALGQLMLFVDGMLGVV-----AHSDTIQWLYTLCA----SLSRLV 218 (339)
T ss_dssp HHHHHHTTHHHHHHHHHTTS-C----HHHHHHHHHHHHHHTTSHHHHHHHH-----HCHHHHHHHHHGGG----CSCHHH
T ss_pred HHHHHHhccHHHHHHHHHhc-C----hHHHHHHHHHHHHHHhccccccchh-----CCHHHHHHHHHHHc----CccHHH
Confidence 56999999999999999876 2 3445566666433211111111110 01222333333332 158999
Q ss_pred hhHHHHHhhhcccC
Q 000177 907 IQPALNVLINLVCP 920 (1922)
Q Consensus 907 ~~~AL~Vl~ncVc~ 920 (1922)
+|.||.+|.++|=.
T Consensus 219 ~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 219 VKTALKLLLVFVEY 232 (339)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc
Confidence 99999999966643
No 393
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=25.32 E-value=15 Score=48.14 Aligned_cols=15 Identities=47% Similarity=0.514 Sum_probs=11.9
Q ss_pred cccccccCCHHHHHH
Q 000177 790 AAYKPLDISNEAIDA 804 (1922)
Q Consensus 790 ~~~k~~~~s~e~~~~ 804 (1922)
.+|+-+-+|..-++-
T Consensus 73 ~py~~LPiSa~LvHw 87 (956)
T 4aco_A 73 VPYKDLPISAELIHW 87 (956)
T ss_dssp CCTTTCCCCHHHHHH
T ss_pred cchhcCchhHHHHHH
Confidence 459999999987663
No 394
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=23.13 E-value=1e+02 Score=39.67 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=90.5
Q ss_pred HHHHhhhc-hhHHHHHh-hhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhHHHHhccccchhhhc
Q 000177 544 CIQCLETL-GEYVEVLG-PVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFAALFVDRGGMQKLLA 621 (1922)
Q Consensus 544 ~l~~L~~l-GEYqE~L~-~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA~eFV~~gGlq~LL~ 621 (1922)
.|+.|+.- +.|.+.+. .|-+++++-.+..||+. .+..+.-.|.+.|..|..|... ..+|+.|||..|..
T Consensus 332 AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s--------~~~~v~~~A~~aL~nLs~~~~~-~~~I~~g~ip~LV~ 402 (584)
T 3l6x_A 332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN--------EHERVVKAASGALRNLAVDARN-KELIGKHAIPNLVK 402 (584)
T ss_dssp HHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC--------SCHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC--------CCHHHHHHHHHHHHHHhCChhH-HHHHHhCCHHHHHH
Confidence 56666432 23333332 34457888888888863 2224566777888888777664 35679999999986
Q ss_pred cCCCc-cc-ccc-----cceeeehh----cchhhHHHHhhcCChhhHHHHHHHHHHHHhcC--ChHHhhhHhhHhhhhcc
Q 000177 622 VPRNN-QT-FFG-----LSSCLFTI----GSLQGIMERVCALPTDVVHQLVELAIQLLECT--QDQARKNAALFFAAAFV 688 (1922)
Q Consensus 622 vPR~s-~a-~tg-----vS~Clyyl----ay~~~aMERvC~lp~~vl~~lV~yaLwLLecs--hds~r~~A~mFF~~sf~ 688 (1922)
+=+.+ .. .+. +..+++.| +.+.+.+.-|... ..|..-..||..+ .+...+.|+..++.-..
T Consensus 403 LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~------g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 403 NLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET------QGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp TSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT------THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC------CChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 54332 11 111 11122232 1222222222211 3566666778875 78899999999999999
Q ss_pred hhHHHHHhhhcccHHHH
Q 000177 689 FRAIIDAFDAQDGLQKL 705 (1922)
Q Consensus 689 Fr~il~~FD~~dGLrkL 705 (1922)
++.+-..|-+ +|.+|-
T Consensus 477 ~~elr~~~kk-~G~~~~ 492 (584)
T 3l6x_A 477 YKELRKPLEK-EGWKKS 492 (584)
T ss_dssp SHHHHHHHHT-TTCCGG
T ss_pred CHHHHHHHHH-cCCCHH
Confidence 9999999988 687764
No 395
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=22.47 E-value=1.3e+03 Score=29.49 Aligned_cols=211 Identities=8% Similarity=0.059 Sum_probs=110.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCCceeee--cc----CCCCeeEEEeeecCCCcEEEEecCCcEEEeccCC
Q 000177 1510 ALLTCITFLGDSSHIAVGSHTKELKIFDSNSSSPLESC--TS----HQAPVTLVQSHLSGETQLLLSSSSQDVHLWNASS 1583 (1922)
Q Consensus 1510 ~~Vt~LaFSPDG~lLASGS~DGtIkIWDl~tgk~l~tL--~g----Hss~VtsLq~afSpDG~lLaSSsDgtVkLWDl~t 1583 (1922)
..|.++.-..+|++ ..|+ ++-|..||..+++...-. .. ....|.++ ....++.+.++...+-+.++|..+
T Consensus 373 ~~v~~i~~d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--~~d~~g~lWigT~~~Gl~~~~~~~ 448 (758)
T 3ott_A 373 NRIRHIYEDKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYI--FEDTAGQLWISTCLGGIFVVDKHK 448 (758)
T ss_dssp SCEEEEEECTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEE--EECTTSEEEEEESSSCEEEEEHHH
T ss_pred CceEEEEECCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEE--EEcCCCCEEEEECCCceEEEcccc
Confidence 45899888888774 4455 456889998776543211 11 23458888 667788877776666677787542
Q ss_pred C---CCCcc---eEec--------cceeEEEcCCCCEEEEeecCCCCCeEEEEECCCCceeeeeccccccccCCCCcceE
Q 000177 1584 I---AGGPM---HSFE--------GCKAARFSNSGNLFAALPTETSDRGILLYDIQTYQLEAKLSDTSVNLTGRGHAYSQ 1649 (1922)
Q Consensus 1584 ~---~gk~l---~tf~--------gh~sVaFSPDG~~LaSgS~~S~DgtIrIWDlrTgk~i~tL~d~s~~~~~~gh~~~v 1649 (1922)
. ..... ..+. .+.++...++|+..+.++ +. +-+..||..+++...... .... .......
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~--t~-~Gl~~~d~~~~~~~~~~~-~~~~---~~~~~~~ 521 (758)
T 3ott_A 449 LMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLY--NN-KGIDKINPRTREVTKLFA-DELT---GEKSPNY 521 (758)
T ss_dssp HHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEET--TC-SSEEEEETTTTEEEEECT-TTSC---GGGCEEE
T ss_pred ccccCCcceecccccccccccccceeeeEEEcCCCCEEEEcc--CC-CCcEEEeCCCCceEEecC-CCcC---CCcccce
Confidence 0 00111 1111 145677777888766331 33 348889998766543221 0000 0122344
Q ss_pred EEEcCCCCeEeecc---EEEEcCCCcceeee--ccCC-Cce-EEEEecCCCEEEEEe---EEEecCCCeEEE-EEcCCCc
Q 000177 1650 IHFSPSDTMLLWNG---ILWDRRNSVPVHRF--DQFT-DHG-GGGFHPAGNEVIINS---EVWDLRKFRLLR-SVPSLDQ 1718 (1922)
Q Consensus 1650 VaFSPdG~lLaSgg---rLWDlrtgk~I~kf--~gh~-~~V-sVaFSPdG~~LASGS---eIWDLrTgklL~-tl~gH~~ 1718 (1922)
+....+|.+.+... ..||..+++.. .+ .+.. ..+ ++... +|...++.. -.+|..+.+... .++...-
T Consensus 522 i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~gl~~~~i~~i~~~-~g~lWi~t~~Gl~~~~~~~~~~~~~~~~~~~~ 599 (758)
T 3ott_A 522 LLCDEDGLLWVGFHGGVMRINPKDESQQ-SISFGSFSNNEILSMTCV-KNSIWVSTTNGLWIIDRKTMDARQQNMTNKRF 599 (758)
T ss_dssp EEECTTSCEEEEETTEEEEECC--CCCC-BCCCCC---CCEEEEEEE-TTEEEEEESSCEEEEETTTCCEEEC--CCCCC
T ss_pred EEECCCCCEEEEecCceEEEecCCCceE-EecccCCCccceEEEEEC-CCCEEEECCCCeEEEcCCCceeEEecCCCCce
Confidence 67777887766433 67776655432 22 2222 234 55553 665544444 266776654322 1111111
Q ss_pred eeEE-EccCCCEEEEE
Q 000177 1719 TTIT-FNARGDVIYAI 1733 (1922)
Q Consensus 1719 ~sVa-FSPdG~~LaSg 1733 (1922)
.... -.++|.+.+.+
T Consensus 600 ~~~~~~~~~G~l~fG~ 615 (758)
T 3ott_A 600 TSLLFDPKEDCVYLGG 615 (758)
T ss_dssp SEEEEETTTTEEEEEC
T ss_pred eeeEEECCCCcEEEec
Confidence 2233 34577666654
No 396
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=20.46 E-value=86 Score=40.76 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=46.9
Q ss_pred hHHHHHhhhhhccchHHHHHHHhhhcchhhccccccchhhHHHHHHHHhhhhhhH-HHHhccccchhhhcc
Q 000177 553 EYVEVLGPVLHEKGVDVCLALLQRSSKYEEESKVAMLLPDVMKLICALAAHRKFA-ALFVDRGGMQKLLAV 622 (1922)
Q Consensus 553 EYqE~L~~~~~~~~~~l~l~ll~~~~~~~~~~~~~~l~~eaLk~l~aLl~HkKfA-~eFV~~gGlq~LL~v 622 (1922)
|.|.++ -++|+.+.++.+|.. ....++..+.-|.|.+|..||.+...- ..|.|.|++++|..+
T Consensus 199 ~iQklV---AFEnaFe~Lf~Ii~~----Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~L 262 (651)
T 3grl_A 199 AIQKIV---AFENAFERLLDIITE----EGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPW 262 (651)
T ss_dssp HHHHHH---HHTTHHHHHHHHHHH----HTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGG
T ss_pred HHHHHH---HHhccHHHHHHHHHh----cCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence 445543 367888888887764 344566788999999999999987433 348899999998755
Done!