BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000179
         (1904 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FB7|A Chain A, The Apo Form Of Idole-3-Glycerol Phosphate Synthase (Trpc)
           Form Mycobacterium Tuberculosis
          Length = 275

 Score = 30.8 bits (68), Expect = 6.9,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%)

Query: 165 RVFATLKVLGMVLEQLTQEIPEELKQVIDSDAAMTDDLVAYNIVPLDAPTVANAIVSFPE 224
           R   TL V      ++   +P  + ++ +S    T DL+AY     DA  V   +V+  +
Sbjct: 194 RDLXTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGD 253

Query: 225 VQAAVSALKYFGDLPRLPE 243
            +AAV+ L   G  P  P+
Sbjct: 254 PRAAVADLVTAGTHPSCPK 272


>pdb|3QJA|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
           Indole-3-Glycerol Phosphate Synthase (Trpc) In Apo Form
 pdb|3T40|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
           Glycerol Phosphate Synthase (Igps) Complex With
           N-2-Carboxyphenyl Glycine (Cpg)
 pdb|3T44|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
           Glycerol Phosphate Synthase (Igps) In Complex With
           Indole Glycerol Phosphate (Igp) Amd Anthranilate
 pdb|3T55|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
           Glycerol Phosphate Synthase (Igps) In Complex With
           Phenoxymethyl Benzoic Acid (Pmba)
 pdb|3T78|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Indole
           Glycerol Phosphate Synthase (Igps) In Complex With
           5-Fluoroanthranilate
          Length = 272

 Score = 30.4 bits (67), Expect = 9.0,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 36/79 (45%)

Query: 165 RVFATLKVLGMVLEQLTQEIPEELKQVIDSDAAMTDDLVAYNIVPLDAPTVANAIVSFPE 224
           R   TL V      ++   +P  + ++ +S    T DL+AY     DA  V   +V+  +
Sbjct: 191 RDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGD 250

Query: 225 VQAAVSALKYFGDLPRLPE 243
            +AAV+ L   G  P  P+
Sbjct: 251 PRAAVADLVTAGTHPSCPK 269


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,325,051
Number of Sequences: 62578
Number of extensions: 2287863
Number of successful extensions: 6718
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6714
Number of HSP's gapped (non-prelim): 7
length of query: 1904
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1791
effective length of database: 7,902,023
effective search space: 14152523193
effective search space used: 14152523193
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)