Query 000179
Match_columns 1904
No_of_seqs 271 out of 437
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:54:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 99.9 3.2E-25 1.1E-29 241.2 10.1 132 33-187 6-138 (183)
2 2rkk_A Vacuolar protein sortin 99.7 1.2E-16 4.2E-21 171.0 10.4 119 46-184 5-140 (168)
3 4hg6_A Cellulose synthase subu 51.8 6 0.00021 52.1 2.7 133 1278-1423 224-362 (802)
4 1ich_A TNF-1, tumor necrosis f 23.6 33 0.0011 35.1 2.1 81 1084-1164 11-103 (112)
5 3hyb_A RBCX protein; rubisco, 12.3 1E+02 0.0035 33.1 2.6 103 159-285 29-135 (155)
6 4hpq_C ATG17, KLTH0D15642P; au 10.4 5E+02 0.017 32.0 8.1 74 115-210 322-395 (413)
7 1t8h_A YLMD protein sequence h 8.7 1.1E+02 0.0037 35.8 1.4 24 1384-1416 28-52 (277)
8 3ka1_A RBCX protein; chaperone 7.2 4.7E+02 0.016 27.4 5.1 100 160-283 10-114 (126)
9 1l6x_B Minimized B-domain of p 6.6 74 0.0025 26.3 -0.9 24 1299-1322 1-24 (34)
10 1zda_A Mini protein A domain, 5.8 1.1E+02 0.0039 25.7 -0.2 25 1298-1322 5-29 (38)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=99.91 E-value=3.2e-25 Score=241.24 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=112.2
Q ss_pred CCCCcCccccCccChhHHHHhhhhhccCCCeeeehhhHHHHHhcccCCCCCCCcchhHHHHHHhHHHHHHhhh-cccCCc
Q 000179 33 IAGYVPSSLANNRDIDAILRAADEIQEEDPSVSRILCEHAYSLAQNLDPNSEGRGVLQFKTGLMSVIKQKLAK-REVGTI 111 (1904)
Q Consensus 33 ~s~~VP~sL~~~~~I~~iLrvA~Eie~~dP~VAylcr~yA~e~a~~lDp~S~grgVrQFKt~Ll~~leq~le~-~~~~~i 111 (1904)
+-+.||++|+ +|.||||+|+|+|++||+||||||+||+|++++||++ |+||+||+|+||++||+.+.. .+++.|
T Consensus 6 ~l~~vP~~LK---~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~~--~~e~~~f~~~LLd~LE~~K~~~~~~dai 80 (183)
T 2lxl_A 6 PLPPLPAQFK---SIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDSK--TPECRKFLSKLMDQLEALKKQLGDNEAI 80 (183)
T ss_dssp CCCCCCGGGS---SSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCSC--CTTHHHHHHHHHHHHHHHHHHHCSCHHH
T ss_pred CCCCCChhHH---hHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhcccC--ChhHHHHHHHHHHHHHHHHHhccchhHH
Confidence 3457999999 8999999999999999999999999999999999994 799999999999999987443 222222
Q ss_pred ccchhHHHHHHHHHHHHHHhchhHHHHHHHHhhccCcccCCchhhHHhHHHHHHHHHHHHHHHHHHHHhccCCHHH
Q 000179 112 DRSQDVARLQEFYKRYREKNNVDKLREEEMLLRESGVFSGHLGELERKTVKRKRVFATLKVLGMVLEQLTQEIPEE 187 (1904)
Q Consensus 112 ~~~~D~~~lq~fy~~Y~~k~~i~~l~~ad~~dR~~~~f~~~~~~~~~~~~~~~K~y~tA~vL~eVL~~~~~~~~~~ 187 (1904)
++|.. .|.|+++|+.|.| +.+|++||+ ++++ ++++|.|+||++|||||+.|++.+++.
T Consensus 81 --~~~~~-~~ayve~fAlklF----~~Ad~~dRa-~~~t----------~~~~k~F~aA~~f~eVL~~fg~l~~e~ 138 (183)
T 2lxl_A 81 --TQEIV-GCAHLENYALKMF----LYADNEDRA-GRFH----------KNMIKSFYTASLLIDVITVFGELTDEN 138 (183)
T ss_dssp --HCHHH-HHHHHHHHHHHHH----HHHHHHHHT-TCCC----------HHHHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred --hhHHH-HHHHHHHHHHHHH----HHHHHHhhc-cchh----------HHHHHHHHHHHHHHHHHHHHCCCCHHH
Confidence 33333 6788888887775 899999999 5665 999999999999999999999986554
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.2e-16 Score=170.95 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=102.5
Q ss_pred ChhHHHHhhhhhccC-CCeeeehhhHHHHHhcccCCCCCCCcchhHHHHHHhHHHHHHhhh-cccCC-------------
Q 000179 46 DIDAILRAADEIQEE-DPSVSRILCEHAYSLAQNLDPNSEGRGVLQFKTGLMSVIKQKLAK-REVGT------------- 110 (1904)
Q Consensus 46 ~I~~iLrvA~Eie~~-dP~VAylcr~yA~e~a~~lDp~S~grgVrQFKt~Ll~~leq~le~-~~~~~------------- 110 (1904)
+|.|+|+.|+|+|+. ||.||||||+||+|.+++++. .++++++|.+.||++||+.+.. .++++
T Consensus 5 ~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~~~--~s~e~~~~l~~LlD~LE~~K~~~~~~e~~~~~~~~~~~~~~ 82 (168)
T 2rkk_A 5 NAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEED--RSQEMTALATELLDTIEAFKKEIGGESEAEDSDKSLHVMNT 82 (168)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCTT--CCHHHHHHHHHHHHHHHHHHHTTC-----------CTTTTH
T ss_pred hHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHhccccccccccccchhhhhh
Confidence 689999999999999 999999999999999999976 5699999999999999998554 44444
Q ss_pred -cccchhHHHHHHHHHHHHHHhchhHHHHHHHHhhccCcccCCchhhHHhHHHHHHHHH-HHHHHHHHHHHhccCC
Q 000179 111 -IDRSQDVARLQEFYKRYREKNNVDKLREEEMLLRESGVFSGHLGELERKTVKRKRVFA-TLKVLGMVLEQLTQEI 184 (1904)
Q Consensus 111 -i~~~~D~~~lq~fy~~Y~~k~~i~~l~~ad~~dR~~~~f~~~~~~~~~~~~~~~K~y~-tA~vL~eVL~~~~~~~ 184 (1904)
| ++|+. .+.|.++|+.|.| ..+|++||+ |+++ ++++|+|+ ||..+++||..+|+.+
T Consensus 83 ~i--~d~~~-a~a~ve~FAlklF----~~Ad~~dra-g~~~----------k~~~k~fy~ta~~F~avl~~fg~~~ 140 (168)
T 2rkk_A 83 LI--HDQEK-AKIYMLNFTMSLY----NEKLKQLKD-GPWD----------VMLKRSLWCCIDLFSCILHLWKENI 140 (168)
T ss_dssp HH--HCHHH-HHHHHHHHHHHHH----HHHHHHHHT-SCCS----------HHHHHHHHHHHHHHHHHHHHTGGGS
T ss_pred hc--ccHHH-HHHHHHHHHHHHH----HHHHHHHhc-CCcc----------hhHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4 45555 8999999998886 899999999 6776 88999999 7999999999999885
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=51.78 E-value=6 Score=52.11 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=80.1
Q ss_pred CCCCCCccceeeeccccccccccCCccchH-HHHhhhhhhHHHHhhccCCCCceEecccceeeccc-----chhhhcccc
Q 000179 1278 EGKPENQNHAVIFTRGNAIQTIDMNQDNYF-EEALKMRNLLEEFHADHGIRPPTILGVREHVFTGS-----VSSLAYFMS 1351 (1904)
Q Consensus 1278 eGKpeNQNhAiiFtRGe~lQtIDmNQDnYl-EE~lKmrnlL~ef~~~~~~~~~~IlG~RE~IFt~~-----v~~La~f~a 1351 (1904)
.||+.|-|+++=-++||++-++|.+- .+ .++| +.+++.|+++. .+.+++.+-++..++ .+......
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~--~~~pd~L--~~lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~~- 295 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADH--VPSRDFL--ARTVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRCP- 295 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTE--EECTTHH--HHHHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTSC-
T ss_pred CcchHHHHHHHHhcCCCEEEEECCCC--CcChHHH--HHHHHHHhcCC---CeEEEeccEEEeCCchHhhhhhHHhhhh-
Confidence 48999999999999999999999853 22 2222 24556675543 345666554444433 22222222
Q ss_pred cchhhhhhhhhHhhcccccccccccCCcccccccccccCcccccccccccchhhhhhhhhhccCceeeeeee
Q 000179 1352 NQETSFVTLGQRVLANPLKCRMHYGHPDVFDRVFHITRGGISKASRVINISEDIYAGFNTTLRQGNVTHHEY 1423 (1904)
Q Consensus 1352 ~qE~sF~Tl~qR~la~Pl~~r~HYGHPD~fd~~f~~trGGvSKAsk~i~lsEDIfaG~n~~lRgG~i~h~ey 1423 (1904)
..+..|-...++.... .+.-.--|+==++.|.....-||... -.++||..-++-...+|.++.++.-
T Consensus 296 ~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~~ 362 (802)
T 4hg6_A 296 PENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYIDR 362 (802)
T ss_dssp CTTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECCC
T ss_pred HHHHHHHHHHHhhHhh-cCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCCeEEEecC
Confidence 2233344444444432 22233345554555555555577764 3468999999998888888877653
No 4
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=23.62 E-value=33 Score=35.14 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=53.5
Q ss_pred CCccHHHHHHhhCc-hhhhhHHHhhCCCCCCccccccCCch-----hhhhhhhhhhccc------chhhhcccccccHHH
Q 000179 1084 DGISILFYLQKIYP-DEWKNFLSRIGRDENSQDTELFDSPS-----DILELRFWASYRA------QTLARTVRGMMYYRK 1151 (1904)
Q Consensus 1084 dgisiL~YLq~iyP-dEW~NFleR~~~~~~~~~~~~~~~~~-----~~l~lRlWAS~Rg------QTL~RTV~GmMyY~~ 1151 (1904)
+.-.+|+..-..-| .+|+.|+.++|..+.+-+.-..+.|. .-.=||.|----| +||..+.+-|=--.-
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~~ 90 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGC 90 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHcCCCHHHHHHHHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccHHH
Confidence 45677888887777 89999999999766432211011121 2235889998876 888888888877778
Q ss_pred HHHHHHHhhcCCC
Q 000179 1152 ALMLQAYLERMTS 1164 (1904)
Q Consensus 1152 Alkll~~le~~~~ 1164 (1904)
|-+++..++.++.
T Consensus 91 ae~Ie~~l~~~~~ 103 (112)
T 1ich_A 91 LEDIEEALCGPAA 103 (112)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHhcccc
Confidence 8888877776654
No 5
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=12.32 E-value=1e+02 Score=33.08 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhhhhhhhccccCcccccccCCCcccccccccchhHHHHHHHHHhcCCC
Q 000179 159 KTVKRKRVFATLKVLGMVLEQLTQEIPEELKQVIDSDAAMTDDLVAYNIVPLDAPTVANAIVSFPEVQAAVSALKYFGDL 238 (1904)
Q Consensus 159 ~~~~~~K~y~tA~vL~eVL~~~~~~~~~~~~~~~~~~~~~~~~~~~YNIlPl~~~~~~~~i~~~pev~aA~~al~~~~~l 238 (1904)
.+++.--.|-|...+--||.++.+.+|+.-....+=.+.+..+-+.| |--|-.. -..--++.-+||.+.+.
T Consensus 29 Dtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s~~iqDGe~f-l~~L~~E-~~~LA~RIM~VRehlae------- 99 (155)
T 3hyb_A 29 DTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSAGKVQDGEKY-IEELFLE-KPDLALRIMTVREHIAE------- 99 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSSHHHH-HHHHHHH-CHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCcccHHHH-HHHHHhh-CHHHHHHHHHHHHHHHH-------
Confidence 34666678999999999999999888766322211111222222222 0000000 01122333355555531
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHh--ccccccccchHHHH--HHHHcccc
Q 000179 239 PRLPEDFPIPPSRNIDMLDFLHFVF--GFQKDNVSNQREHI--VLLLANEQ 285 (1904)
Q Consensus 239 P~w~~~~~~p~~~i~DIfd~L~~~F--GFQkDNVrNQrEHL--mlLLaNr~ 285 (1904)
.++|++..+- |.|+.|++=+|+|| |+.++...
T Consensus 100 ---------------~v~eflpeMv~~~IqqaN~el~Rq~LeR~t~~~~~~ 135 (155)
T 3hyb_A 100 ---------------EIAEFLPEMVVTGIQQANMEKRRQHLERMTQVSLSH 135 (155)
T ss_dssp ---------------HHGGGHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 2444554443 78999999999999 77766444
No 6
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=10.37 E-value=5e+02 Score=31.99 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHHHHHhchhHHHHHHHHhhccCcccCCchhhHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhhhh
Q 000179 115 QDVARLQEFYKRYREKNNVDKLREEEMLLRESGVFSGHLGELERKTVKRKRVFATLKVLGMVLEQLTQEIPEELKQVIDS 194 (1904)
Q Consensus 115 ~D~~~lq~fy~~Y~~k~~i~~l~~ad~~dR~~~~f~~~~~~~~~~~~~~~K~y~tA~vL~eVL~~~~~~~~~~~~~~~~~ 194 (1904)
+.+.+|..||++|..-| +.|. -|++||+.-..|.-.+++=..+=|+++.+.+ .++. +.
T Consensus 322 ~~~~~L~~~Y~~f~~aY--~~lL----------------~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e~d---~~~R-e~ 379 (413)
T 4hpq_C 322 RQTRNLLDFYANFERSY--HNLL----------------KEVKRRKETAAKLSQILKSCETQLEQINTAD---LRER-QM 379 (413)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HH
T ss_pred HHHHHHHHHHHHHHHHH--HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-HH
Confidence 45667888888886544 1221 2566777777777777777788888877642 2222 34
Q ss_pred hhhccccCcccccccC
Q 000179 195 DAAMTDDLVAYNIVPL 210 (1904)
Q Consensus 195 ~~~~~~~~~~YNIlPl 210 (1904)
--..-++|-|=+|+|=
T Consensus 380 F~~~~G~yLP~diwpg 395 (413)
T 4hpq_C 380 FLLENGNYLPETIWPD 395 (413)
T ss_dssp HHHHSSSSSCGGGSTT
T ss_pred HHHHhcccCChhhCCC
Confidence 4556789999999873
No 7
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=8.71 E-value=1.1e+02 Score=35.76 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=14.9
Q ss_pred cccccc-CcccccccccccchhhhhhhhhhccCc
Q 000179 1384 VFHITR-GGISKASRVINISEDIYAGFNTTLRQG 1416 (1904)
Q Consensus 1384 ~f~~tr-GGvSKAsk~i~lsEDIfaG~n~~lRgG 1416 (1904)
.+++|| ||||++ .|+++|.-+.-|
T Consensus 28 ~~fttR~GGvS~~---------py~slNlg~~vg 52 (277)
T 1t8h_A 28 AGLTTKHGGESKG---------PFASLNMGLHVG 52 (277)
T ss_dssp EEEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred EEEEcCCCCccCC---------cccceeccCCCC
Confidence 345666 887765 577777554433
No 8
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=7.20 E-value=4.7e+02 Score=27.36 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHhhhh-hhhccccCcccccccCCCcccccccccchhHHHHHHHHHhcCCC
Q 000179 160 TVKRKRVFATLKVLGMVLEQLTQEIPEELKQVIDS-DAAMTDDLVAYNIVPLDAPTVANAIVSFPEVQAAVSALKYFGDL 238 (1904)
Q Consensus 160 ~~~~~K~y~tA~vL~eVL~~~~~~~~~~~~~~~~~-~~~~~~~~~~YNIlPl~~~~~~~~i~~~pev~aA~~al~~~~~l 238 (1904)
+++.--.|-|...+--||.++.+.+|+.-....+= .+.+..+-+.| |--|-.. -..--++.-+||.+.+.
T Consensus 10 tak~L~~yfTY~Avr~Vl~QL~E~np~~~~wL~~F~~~~~~~DGe~f-l~~L~~E-~~~LA~RIM~vR~hla~------- 80 (126)
T 3ka1_A 10 TTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERY-LEALFRE-QPDLGFRILTVREHLAE------- 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCSSCHHHH-HHHHHHH-CHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCccHHHH-HHHHHhh-CHHHHHHHHHHHHHHHH-------
Confidence 46667789999999999999998877652221110 11111222222 0000000 01223344467766653
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHH--hccccccccchHHHH--HHHHcc
Q 000179 239 PRLPEDFPIPPSRNIDMLDFLHFV--FGFQKDNVSNQREHI--VLLLAN 283 (1904)
Q Consensus 239 P~w~~~~~~p~~~i~DIfd~L~~~--FGFQkDNVrNQrEHL--mlLLaN 283 (1904)
.++|+|..+ =|.|++|++=+|+|| |+.++.
T Consensus 81 ---------------~v~d~l~eMv~~~I~q~N~e~~Rq~Ler~t~~~~ 114 (126)
T 3ka1_A 81 ---------------MVADYLPEMLRAGIQQANLQQRAQQLERMTQVSE 114 (126)
T ss_dssp ---------------HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 122334333 378999999999999 776553
No 9
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=6.59 E-value=74 Score=26.25 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=19.9
Q ss_pred ccCCccchHHHHhhhhhhHHHHhh
Q 000179 1299 IDMNQDNYFEEALKMRNLLEEFHA 1322 (1904)
Q Consensus 1299 IDmNQDnYlEE~lKmrnlL~ef~~ 1322 (1904)
+|+-|.|-|=|.|+|.||-+|=..
T Consensus 1 ~~~~qQnaFYevLh~~nLtEeQrn 24 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEEQRN 24 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHH
Confidence 367789999999999999887553
No 10
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=5.81 E-value=1.1e+02 Score=25.72 Aligned_cols=25 Identities=40% Similarity=0.434 Sum_probs=21.2
Q ss_pred cccCCccchHHHHhhhhhhHHHHhh
Q 000179 1298 TIDMNQDNYFEEALKMRNLLEEFHA 1322 (1904)
Q Consensus 1298 tIDmNQDnYlEE~lKmrnlL~ef~~ 1322 (1904)
-+++-|.|-|=|.|+|.||-+|=..
T Consensus 5 ~~~~~QQnaFYevLh~~nLtEeQrn 29 (38)
T 1zda_A 5 SFNMQQQRRFYEALHDPNLNEEQRN 29 (38)
T ss_dssp TTTTTSSHHHHHHHSCSSSCTTHHH
T ss_pred chhHHHHHHHHHHHcCCCCCHHHHH
Confidence 4688999999999999999877543
Done!