Query 000179
Match_columns 1904
No_of_seqs 271 out of 437
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 22:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000179.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000179hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfi1 g.41.3.1 (I:1-49) RBP9 13.8 20 0.0014 29.8 0.2 9 353-361 2-10 (49)
2 d1wlna1 b.26.1.2 (A:8-114) Afa 10.0 69 0.005 29.6 2.8 44 1261-1305 19-73 (107)
3 d1j98a_ d.185.1.2 (A:) Autoind 9.8 13 0.00096 37.4 -2.6 100 282-401 31-131 (154)
4 d1xhba2 c.68.1.17 (A:95-422) P 9.3 50 0.0037 35.0 1.7 33 1279-1311 94-129 (328)
5 d2yrka1 g.37.1.4 (A:8-55) Zinc 6.7 33 0.0024 28.2 -1.0 12 1330-1341 18-29 (48)
6 d1r9wa_ d.89.1.2 (A:) Replicat 6.5 74 0.0054 31.5 1.2 43 1399-1445 39-82 (145)
7 d1x4la1 g.39.1.3 (A:8-36) Four 5.5 72 0.0052 23.6 0.3 8 1587-1594 11-18 (29)
8 d1r0va1 c.52.2.1 (A:62-139) Di 5.4 2.2E+02 0.016 24.0 3.4 33 1214-1253 41-73 (78)
9 d2imra1 b.92.1.11 (A:34-90,A:3 5.0 44 0.0032 29.3 -1.3 44 1375-1432 34-77 (77)
10 d1hfes_ a.137.4.1 (S:) Fe-only 4.8 1.8E+02 0.013 26.4 2.7 40 88-127 1-40 (88)
No 1
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.77 E-value=20 Score=29.81 Aligned_cols=9 Identities=33% Similarity=0.947 Sum_probs=7.5
Q ss_pred cccccchhh
Q 000179 353 ANIRFLPEC 361 (1904)
Q Consensus 353 aNLRFMPEC 361 (1904)
+.+||+|||
T Consensus 2 s~~rFC~eC 10 (49)
T d1twfi1 2 TTFRFCRDC 10 (49)
T ss_dssp CCCCBCSSS
T ss_pred CceecChhc
Confidence 568999998
No 2
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.02 E-value=69 Score=29.58 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=30.3
Q ss_pred CcceeEEEecCCCCCCCCCCC-CC----------ccceeeeccccccccccCCccc
Q 000179 1261 KDKEIYSIKLPGNPKLGEGKP-EN----------QNHAVIFTRGNAIQTIDMNQDN 1305 (1904)
Q Consensus 1261 ~~~~~yrikLpG~pilGeGKp-eN----------QNhAiiFtRGe~lQtIDmNQDn 1305 (1904)
....+|+++ +|...+|-|++ +| ..||.|-..++.+.+.|.+..|
T Consensus 19 ~~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 19 DKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred CccEEEEEC-CCCEEECCCCCCCCcEEECCcceeeeEEEEEEcccccEEecCCCCc
Confidence 334556666 45555665542 22 4699999999999999998876
No 3
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=9.85 E-value=13 Score=37.41 Aligned_cols=100 Identities=9% Similarity=0.059 Sum_probs=55.0
Q ss_pred ccccccCCCCCC-CCCcchHHHHHHHHHHHHhhHHHHHHhhcCCcccccccccChhhHHHHHHHHHHhhhcccccccchh
Q 000179 282 ANEQSRLGIPDE-NEPKLDEAAVQRVFMKSLDNYIKWCDYLCIQPVWSSLEAVGKEKKILFVSLYLLIWGEAANIRFLPE 360 (1904)
Q Consensus 282 aNr~sR~~p~~~-~~~~ld~~AL~~Lh~k~~~NYkkWC~~L~~~~~w~~~~~~s~~~~l~~iALYLLIWGEAaNLRFMPE 360 (1904)
.+-..|+..|.. ..+...-++|..|.|.++.|+..|....+.-. |.||.+.+ |.||++||+- -||
T Consensus 31 t~fDlR~~qPN~e~m~~~~lHTlEHL~At~lRn~~~~~d~~~iI~-~gPMGCrT--------GFYl~~~g~~-----~~~ 96 (154)
T d1j98a_ 31 NKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIID-ISPMGCQT--------GYYLVVSGET-----TSA 96 (154)
T ss_dssp EEEEEECSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTCSSEEEEE-EEECTTSS--------EEEEEEEECC-----CHH
T ss_pred EEEEEeecCCChhhCCCcchHHHHHHHHHHHHhCccccCCccEEE-eCCCcccc--------ccEEEEECCC-----CHH
Confidence 345678864432 22333344566788999999988864222111 55776554 6799999974 355
Q ss_pred hHHHHHHhhhHhhhhhhcccCCCCCCCCcCCCccccccccc
Q 000179 361 CLCYIFHHMAREMDVILGQQTAQPANSCTSENGVSFLDQVI 401 (1904)
Q Consensus 361 CLCfIFH~ma~el~~~l~~~~~~~~~~~~~~~e~sFLd~VI 401 (1904)
=+.=+.+.+. .++++-. .++-+...+-|.|+++=.
T Consensus 97 ~i~~l~~~~l---~~i~~~~---eVPga~~~~CGny~~hsL 131 (154)
T d1j98a_ 97 EIVDLLEDTM---KEAVEIT---EIPAANEKQCGQAKLHDL 131 (154)
T ss_dssp HHHHHHHHHH---HHHTTCC---SCTTCSTTTCTTTTCCCH
T ss_pred HHHHHHHHHH---HHHhccC---cCCCCChhcCCChhhCCH
Confidence 5555555443 3333221 111222335667777643
No 4
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.32 E-value=50 Score=35.02 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=21.8
Q ss_pred CCCCCccceeeeccccccccccCC---ccchHHHHh
Q 000179 1279 GKPENQNHAVIFTRGNAIQTIDMN---QDNYFEEAL 1311 (1904)
Q Consensus 1279 GKpeNQNhAiiFtRGe~lQtIDmN---QDnYlEE~l 1311 (1904)
|.+...|.|+--++||+|=.+|.. ..++||+.+
T Consensus 94 G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 94 GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred cchHHHHHHHHhhhcceeeecCcccccChhHHHHHH
Confidence 566667777777777777777655 455555543
No 5
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.70 E-value=33 Score=28.17 Aligned_cols=12 Identities=33% Similarity=0.822 Sum_probs=8.3
Q ss_pred eEecccceeecc
Q 000179 1330 TILGVREHVFTG 1341 (1904)
Q Consensus 1330 ~IlG~RE~IFt~ 1341 (1904)
+=+-+|+||||.
T Consensus 18 ~~~SvrdHiFsk 29 (48)
T d2yrka1 18 ARLSIRDHIFSK 29 (48)
T ss_dssp SSSCHHHHHTSH
T ss_pred eecchHhhhhhH
Confidence 335578899983
No 6
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=6.50 E-value=74 Score=31.52 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.0
Q ss_pred cccchhhhhhhhhhccCceeeeeeeeeeccc-cccCccccccceeccc
Q 000179 1399 INISEDIYAGFNTTLRQGNVTHHEYIQVGKG-RDVGLNQIAVFEGKVA 1445 (1904)
Q Consensus 1399 i~lsEDIfaG~n~~lRgG~i~h~eyiq~GKG-RDvG~~qI~~Fe~Kia 1445 (1904)
-+++||++.|...+|+ .||+|+|+=.- -+.|+-.....+-|.+
T Consensus 39 ~gv~~~l~ea~k~lLq----~hc~y~~~~~~~~~~g~~~L~Ll~Fk~~ 82 (145)
T d1r9wa_ 39 FGVNPTIAEGFKTLIQ----PFILYAHIQCLDCKWGVLILALLRYKCG 82 (145)
T ss_dssp EEECHHHHHTHHHHHG----GGEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred EEeCHHHHHHHHHHHH----hheeEEEEEeccCCCceEEEEEEEEecC
Confidence 3688999999999998 89999986311 1123444444555554
No 7
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.46 E-value=72 Score=23.64 Aligned_cols=8 Identities=38% Similarity=0.900 Sum_probs=6.4
Q ss_pred ccCceeec
Q 000179 1587 HGGARYQA 1594 (1904)
Q Consensus 1587 ~GgAkY~a 1594 (1904)
+||+||++
T Consensus 11 ~gg~kyis 18 (29)
T d1x4la1 11 LGGTKYIS 18 (29)
T ss_dssp SSSCSCEE
T ss_pred cCCceEEE
Confidence 68888875
No 8
>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.37 E-value=2.2e+02 Score=24.03 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=25.7
Q ss_pred cchhhHHHHHHhCccceeeeccccccccCCccceEEEEEE
Q 000179 1214 PEAADIALLMQRNEALRVAFIDDVETLKDGKVHREFYSKL 1253 (1904)
Q Consensus 1214 ~~a~di~~Lm~~~p~LrvAyide~~~~~~g~~~~~yySvL 1253 (1904)
-+-++|..--+.+.+||.|-+||+. +.+||.|-
T Consensus 41 irmeeiaekarnfdelrlavvdees-------eityfrvy 73 (78)
T d1r0va1 41 IRMEEIAEKARNFDELRLAVVDEES-------EITYFRVY 73 (78)
T ss_dssp BCHHHHHHHTTTCSSCEEEEECTTC-------CEEEEEEE
T ss_pred eeHHHHHHHhcCchheeeeeecccc-------eEEEEEEe
Confidence 4557788888999999999999843 46787663
No 9
>d2imra1 b.92.1.11 (A:34-90,A:399-418) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.99 E-value=44 Score=29.30 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=33.3
Q ss_pred ccCCcccccccccccCcccccccccccchhhhhhhhhhccCceeeeeeeeeecccccc
Q 000179 1375 YGHPDVFDRVFHITRGGISKASRVINISEDIYAGFNTTLRQGNVTHHEYIQVGKGRDV 1432 (1904)
Q Consensus 1375 YGHPD~fd~~f~~trGGvSKAsk~i~lsEDIfaG~n~~lRgG~i~h~eyiq~GKGRDv 1432 (1904)
-|||+++-|... |--|.+-+|-.+.||.|.+=|.+|. -|-|||+
T Consensus 34 ~gdP~~L~ra~~-------------~~~~rv~G~~i~flRRGE~W~e~y~-W~~~Rdl 77 (77)
T d2imra1 34 AGHPDELRRQYP-------------HAAEERAGAVIAFLRRGETWQEGFR-WELSRDL 77 (77)
T ss_dssp EECHHHHHHHCT-------------TCEEEECCSEESCCSTTSBCCGGGB-GGGCCCC
T ss_pred cCChHHHHHhcc-------------cccceeeCceeeeeeccchhhhhee-eccccCC
Confidence 688888887764 2235566677789999999998885 5778875
No 10
>d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=4.78 E-value=1.8e+02 Score=26.40 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=31.3
Q ss_pred hhHHHHHHhHHHHHHhhhcccCCcccchhHHHHHHHHHHH
Q 000179 88 VLQFKTGLMSVIKQKLAKREVGTIDRSQDVARLQEFYKRY 127 (1904)
Q Consensus 88 VrQFKt~Ll~~leq~le~~~~~~i~~~~D~~~lq~fy~~Y 127 (1904)
|+|.|..|+.+++..-..|....+..++|-.+++..|+.|
T Consensus 1 v~~~kd~l~~R~~~lY~~D~~~~iR~s~eNp~V~~LY~e~ 40 (88)
T d1hfes_ 1 VKQIKDYMLDRINGVYGADAKFPVRASQDNTQVKALYKSY 40 (88)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHhcCCcCCCCcCHHHHHHHHHH
Confidence 5777888887777765555555677789999999999988
Done!