BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000180
         (1902 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TLQ|A Chain A, Crystal Structure Of Protein Ypjq From Bacillus Subtilis,
           Pfam Duf64
          Length = 189

 Score = 33.1 bits (74), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 128 LYKRRHRVDDIQRQEQNLQESGTFSSELELRSLEMRKVIATLRALVEVLEALSKDADPEG 187
           L KR   ++DI R  Q LQE    +  L +    + KV+     +  VL  L+ D   E 
Sbjct: 19  LNKRGVXIEDIARIVQKLQEKYNPNLPLSVCXENVEKVLNKREIIHAVLTGLALDQLAE- 77

Query: 188 VGRLIKEELQRIKKADAALSG--ELTPYNIV 216
             +L+ E LQ + + D  L G  E+ P +IV
Sbjct: 78  -QKLLPEPLQHLVETDEPLYGIDEIIPLSIV 107


>pdb|3IYK|G Chain G, Bluetongue Virus Structure Reveals A Sialic Acid Binding
           Dom Amphipathic Helices And A Central Coiled Coil In The
           Outer Proteins
 pdb|3IYK|I Chain I, Bluetongue Virus Structure Reveals A Sialic Acid Binding
           Dom Amphipathic Helices And A Central Coiled Coil In The
           Outer Proteins
 pdb|3IYK|K Chain K, Bluetongue Virus Structure Reveals A Sialic Acid Binding
           Dom Amphipathic Helices And A Central Coiled Coil In The
           Outer Proteins
          Length = 600

 Score = 32.0 bits (71), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 190 RLIKEELQRIKKADAALSGELTPYNIVPLEAPSLTNAIGFFPEVRGAISAIRYSEQFPRL 249
           R+  EE+ + +  D  +   L+P    P+E   LT  +  F ++R A+     S Q  + 
Sbjct: 531 RIKHEEIAQRQSDDPMVKRTLSPITADPIELQRLT--LARFYDIRPALRGQALSRQQAQS 588

Query: 250 PADFEISGQRD 260
             D EIS QRD
Sbjct: 589 TYDEEISKQRD 599


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,198,362
Number of Sequences: 62578
Number of extensions: 2263366
Number of successful extensions: 6349
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6336
Number of HSP's gapped (non-prelim): 19
length of query: 1902
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1789
effective length of database: 7,902,023
effective search space: 14136719147
effective search space used: 14136719147
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)