Query 000180
Match_columns 1902
No_of_seqs 291 out of 419
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:59:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 99.9 2E-25 7E-30 242.7 11.6 127 37-182 8-134 (183)
2 2rkk_A Vacuolar protein sortin 99.7 1.2E-17 3.9E-22 178.7 11.0 119 48-182 5-139 (168)
3 4hg6_A Cellulose synthase subu 52.1 4.5 0.00015 53.2 1.6 130 1276-1420 224-361 (802)
4 1ich_A TNF-1, tumor necrosis f 15.2 47 0.0016 34.0 1.0 80 1083-1163 11-103 (112)
5 3f4m_A Tumor necrosis factor, 14.8 2.1E+02 0.0073 31.0 6.0 38 875-912 91-128 (161)
6 3ub0_A Non-structural protein 10.8 5.7E+02 0.02 28.3 7.7 120 56-221 7-129 (199)
7 2ysr_A DEP domain-containing p 10.3 48 0.0016 33.3 -0.6 30 801-830 9-38 (105)
8 1t8h_A YLMD protein sequence h 9.5 1.1E+02 0.0037 35.7 1.9 24 1382-1414 28-52 (277)
9 1jb0_M Photosystem 1 reaction 7.2 2.5E+02 0.0087 22.9 2.4 23 726-750 4-26 (31)
10 2zpa_A Uncharacterized protein 6.9 58 0.002 42.3 -2.1 18 1578-1598 282-299 (671)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=99.92 E-value=2e-25 Score=242.69 Aligned_cols=127 Identities=18% Similarity=0.205 Sum_probs=115.1
Q ss_pred CCCCcCccCCCChhHHHhhhhhhccCCCchhhHhhHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhhhccccccc
Q 000180 37 GAVPPSLGRTSNIDAILQAADEIQDENPNVARILCEQAYSMAQNLDPNSDGRGVLQFKTGLMSIIKQKLAKRENVRIDRN 116 (1902)
Q Consensus 37 ~~VP~sL~~~~~I~~iLr~A~Eie~~dP~VAy~cr~yA~~~a~~lDp~S~grgVrQFkt~Ll~~LE~~~~~~~~~~~~~s 116 (1902)
++||++|| +|.||||+|+|+|++||+||||||+||+|+++++|+ .|+||+||+|+||++||+++++ .+++..++
T Consensus 8 ~~vP~~LK---~I~p~L~~A~Ele~~~PvVaY~Cr~yA~e~~l~l~~--~~~e~~~f~~~LLd~LE~~K~~-~~~~dai~ 81 (183)
T 2lxl_A 8 PPLPAQFK---SIQHHLRTAQEHDKRDPVVAYYCRLYAMQTGMKIDS--KTPECRKFLSKLMDQLEALKKQ-LGDNEAIT 81 (183)
T ss_dssp CCCCGGGS---SSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCS--CCTTHHHHHHHHHHHHHHHHHH-HCSCHHHH
T ss_pred CCCChhHH---hHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhccc--CChhHHHHHHHHHHHHHHHHHh-ccchhHHh
Confidence 47999999 899999999999999999999999999999999998 5899999999999999999887 45555555
Q ss_pred hhHHHHHHHHHHHHHhhhchHHhHHHhhhhccCCCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcC
Q 000180 117 QDIEQLWEFYKLYKRRHRVDDIQRQEQNLQESGTFSSELELRSLEMRKVIATLRALVEVLEALSKD 182 (1902)
Q Consensus 117 ~D~~~lq~fy~~Y~~k~~l~ald~edr~~res~~f~~~~~~~~~~~~K~f~tA~vL~eVL~~~~~~ 182 (1902)
+|. ..|.|+++|+.|.|.+| |++||+ |+++ ++++|+|+||++|||||++||+.
T Consensus 82 ~~~-~~~ayve~fAlklF~~A-d~~dRa----~~~t-------~~~~k~F~aA~~f~eVL~~fg~l 134 (183)
T 2lxl_A 82 QEI-VGCAHLENYALKMFLYA-DNEDRA----GRFH-------KNMIKSFYTASLLIDVITVFGEL 134 (183)
T ss_dssp CHH-HHHHHHHHHHHHHHHHH-HHHHHT----TCCC-------HHHHHHHHHHHHHHHHHHTTSCC
T ss_pred hHH-HHHHHHHHHHHHHHHHH-HHHhhc----cchh-------HHHHHHHHHHHHHHHHHHHHCCC
Confidence 344 48999999999999998 999999 6666 99999999999999999999986
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.2e-17 Score=178.74 Aligned_cols=119 Identities=8% Similarity=0.100 Sum_probs=105.6
Q ss_pred ChhHHHhhhhhhccC-CCchhhHhhHHHHHhhccCCCCCCCchhHHHHHHHHHHHHHHHhhhhccccc------------
Q 000180 48 NIDAILQAADEIQDE-NPNVARILCEQAYSMAQNLDPNSDGRGVLQFKTGLMSIIKQKLAKRENVRID------------ 114 (1902)
Q Consensus 48 ~I~~iLr~A~Eie~~-dP~VAy~cr~yA~~~a~~lDp~S~grgVrQFkt~Ll~~LE~~~~~~~~~~~~------------ 114 (1902)
+|.|+|++|+|++++ ||.||||||+||+|.+++++. +++++++|.+.||++||+.|++ ++++.+
T Consensus 5 ~i~p~l~rA~Ele~~~~PvVaYyCrlYave~iL~~~~--~s~e~~~~l~~LlD~LE~~K~~-~~~~e~~~~~~~~~~~~~ 81 (168)
T 2rkk_A 5 NAARVVATAKDFDKVGLGIIGYYLQLYAVELILSEED--RSQEMTALATELLDTIEAFKKE-IGGESEAEDSDKSLHVMN 81 (168)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCTT--CCHHHHHHHHHHHHHHHHHHHT-TC-----------CTTTT
T ss_pred hHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHh-ccccccccccccchhhhh
Confidence 689999999999999 999999999999999999964 8999999999999999999988 455555
Q ss_pred --cchhHHHHHHHHHHHHHhhhchHHhHHHhhhhccCCCchHHHHhHHHHHHHHH-HHHHHHHHHHHhhcC
Q 000180 115 --RNQDIEQLWEFYKLYKRRHRVDDIQRQEQNLQESGTFSSELELRSLEMRKVIA-TLRALVEVLEALSKD 182 (1902)
Q Consensus 115 --~s~D~~~lq~fy~~Y~~k~~l~ald~edr~~res~~f~~~~~~~~~~~~K~f~-tA~vL~eVL~~~~~~ 182 (1902)
.++|+. .+.|.++|+.|.|.+| |++||+ |+++ ++++|.|+ ||..+++||..||+.
T Consensus 82 ~~i~d~~~-a~a~ve~FAlklF~~A-d~~dra----g~~~-------k~~~k~fy~ta~~F~avl~~fg~~ 139 (168)
T 2rkk_A 82 TLIHDQEK-AKIYMLNFTMSLYNEK-LKQLKD----GPWD-------VMLKRSLWCCIDLFSCILHLWKEN 139 (168)
T ss_dssp HHHHCHHH-HHHHHHHHHHHHHHHH-HHHHHT----SCCS-------HHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred hhcccHHH-HHHHHHHHHHHHHHHH-HHHHhc----CCcc-------hhHHHHHHHHHHHHHHHHHHhCCc
Confidence 664544 9999999999999999 999999 7777 89999999 899999999999987
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=52.14 E-value=4.5 Score=53.24 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=80.5
Q ss_pred CCCCcCccchhhhccccccccccccc---cchHHHHHhhhhhHHHHhhhcCCCCCeeeccccceeccc-----chhhccc
Q 000180 1276 EGKPENQNHAIIFTRGEAIQTIDMNQ---DNYLEEAMKMRNLLEEFRTDHGIRPPSILGVREHVFTGS-----VSSLAWF 1347 (1902)
Q Consensus 1276 eGKpeNQNhAiiFtRGE~lQtIDmNQ---DnYleE~lKmrnlL~Ef~~~~~~~~~~IlG~RE~IFt~~-----v~sLa~f 1347 (1902)
.||+.|-|+++=-++||++-++|.+- .+++++ +++.|+++. .+.+++.+-++..++ .+.....
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~------lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~ 294 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADHVPSRDFLAR------TVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRC 294 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHH------HHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTS
T ss_pred CcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHH------HHHHHhcCC---CeEEEeccEEEeCCchHhhhhhHHhhh
Confidence 47999999999999999999999853 344444 455665432 345565554444432 2222222
Q ss_pred cccchhhHHHHhhHhhccccceeeeccCCcccccccccccCCccccccccccchhhhhcccccccCcceeeee
Q 000180 1348 MSNQETSFVTLGQRVLANPLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRQGNVTHHE 1420 (1902)
Q Consensus 1348 ~a~qE~sF~Tl~qR~la~Pl~~r~HYGHPD~fd~~f~~trGGiSKAsk~i~lsEDifaG~n~~lRgG~i~h~E 1420 (1902)
. ..+..|-...++.... .+.-.--|+-=++.|.....-||... -.++||..-++-...+|.++.++.
T Consensus 295 ~-~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~----~~~~ED~~l~~rl~~~G~ri~~~~ 361 (802)
T 4hg6_A 295 P-PENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAG----ETITEDAETALEIHSRGWKSLYID 361 (802)
T ss_dssp C-CTTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCC----SSSSHHHHHHHHHHTTTCCEEECC
T ss_pred h-HHHHHHHHHHHhhHhh-cCCceecccchhhhHHHHHHcCCcCC----CCcchHHHHHHHHHHcCCeEEEec
Confidence 2 2233444444544432 22333345555666666666688774 346899999999999998887764
No 4
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=15.20 E-value=47 Score=34.04 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=52.9
Q ss_pred CcccHHHHHHhhCC-hhhhhHHHHhcCCCCCCCCCcc-cCC-----chhhhhhhhhhccc------cchhhcccchhcHH
Q 000180 1083 DGISILFYLQKIFP-DEWENFLERIGRGESAGGVDLQ-ENS-----TDSLELRFWASYRG------QTLARTVRGMMYYR 1149 (1902)
Q Consensus 1083 dgvsiL~YLq~iyP-dEW~NFlER~~~~~~~~e~~~~-~~~-----~~~lelRlWAS~Rg------QTL~RTVrGmMyY~ 1149 (1902)
+.-.+|+..-..-| .+|+.|+.++|+.+.+-|+ +. +.+ ..-.=||.|----| +||..+.+-|=.-.
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~-Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~ 89 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSDHEIDR-LELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLG 89 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCHHHHHH-HHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHhCCHHHHHHHHHHcCCCHHHHHH-HHHHCcCChHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccHH
Confidence 44567777777777 8999999999975421110 00 111 23345899998876 88999999888888
Q ss_pred HHHHHhhhhccCCC
Q 000180 1150 RALMLQSYLERRPI 1163 (1902)
Q Consensus 1150 ~ALkll~~lE~~~~ 1163 (1902)
-|-+++..++.+..
T Consensus 90 ~ae~Ie~~l~~~~~ 103 (112)
T 1ich_A 90 CLEDIEEALCGPAA 103 (112)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHhcccc
Confidence 88888888876653
No 5
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=14.75 E-value=2.1e+02 Score=30.99 Aligned_cols=38 Identities=8% Similarity=0.226 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHH
Q 000180 875 EYMSYAVQECYYSIEKILHSLVDGEGRLWVERIFREIN 912 (1902)
Q Consensus 875 ~y~~~Av~e~y~s~~~il~~ll~~~~~~~i~~i~~~v~ 912 (1902)
.|+.-++.||-+.+..++..-|.+.+..+|..+|+..-
T Consensus 91 ~~L~~~L~ec~~lL~~lv~~HLT~KS~~Ri~~vF~~f~ 128 (161)
T 3f4m_A 91 AVLAGLLTECRDVLLELVEHHLTPKSHGRIRHVFDHFS 128 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcchHHHHHHHHHHhC
Confidence 35778899999999999999999888888999997654
No 6
>3ub0_A Non-structural protein 6, NSP6,; feline coronavirus, primer-independen polymerase, replication; 2.60A {Feline infectious peritonitis virus}
Probab=10.75 E-value=5.7e+02 Score=28.35 Aligned_cols=120 Identities=12% Similarity=0.102 Sum_probs=65.7
Q ss_pred hhhhccCCCchhhHhhHHHHHhhccCCCCCCCchhHHHHHHHH---HHHHHHHhhhhccccccchhHHHHHHHHHHHHHh
Q 000180 56 ADEIQDENPNVARILCEQAYSMAQNLDPNSDGRGVLQFKTGLM---SIIKQKLAKRENVRIDRNQDIEQLWEFYKLYKRR 132 (1902)
Q Consensus 56 A~Eie~~dP~VAy~cr~yA~~~a~~lDp~S~grgVrQFkt~Ll---~~LE~~~~~~~~~~~~~s~D~~~lq~fy~~Y~~k 132 (1902)
|+|.-.-+.-|+|=+-.-+|+.|.+.+. ....+.|.|-+.- +..|++.+. +.+ |++-.++-...
T Consensus 7 as~f~nlpSy~~YE~A~~~Ye~a~~ng~--~pQ~~Kql~KA~NIAKse~drd~av--qrK---------LerMAe~Amt~ 73 (199)
T 3ub0_A 7 ASAYAALPSWIAYEKARADLEEAKKNDV--SPQLLKQLTKACNIAKSEFEREASV--QKK---------LDKMAEQAAAS 73 (199)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHH--HHH---------HHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHhHHHHH--HHH---------HHHHHHHHHHH
Confidence 4444444455788888889999998883 3345555554431 223333332 122 44444444333
Q ss_pred hhchHHhHHHhhhhccCCCchHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccchHHHHHHHHHhhhhcCCCCC
Q 000180 133 HRVDDIQRQEQNLQESGTFSSELELRSLEMRKVIATLRALVEVLEALSKDADPEGVGRLIKEELQRIKKADAALSGELTP 212 (1902)
Q Consensus 133 ~~l~ald~edr~~res~~f~~~~~~~~~~~~K~f~tA~vL~eVL~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 212 (1902)
+|-.| ..+||+ .+++-+-+ +.||..|+-+-.+ .+. -+..-+ +..-.|
T Consensus 74 MYKeA-Ra~drk---------------sKvvSam~--~mLF~MlrrLD~~----~vn-----~i~~~A------r~GvvP 120 (199)
T 3ub0_A 74 MYKEA-RAVDRK---------------SKIVSAMH--SLLFGMLKKLDMS----SVN-----TIIEQA------RNGVLP 120 (199)
T ss_dssp HTTC------CC---------------HHHHHHHH--HHHHHHHHHHCCH----HHH-----HHHHHH------HTTCEE
T ss_pred HHHHH-HhhhhH---------------HHHHHHHH--HHHHHHHHHHhHH----HHH-----HHHHHH------HcCeee
Confidence 44455 666655 55555554 4799999988654 222 233333 346789
Q ss_pred cceeeCCCC
Q 000180 213 YNIVPLEAP 221 (1902)
Q Consensus 213 YNIlPl~~~ 221 (1902)
-||||.-..
T Consensus 121 L~~IP~~sa 129 (199)
T 3ub0_A 121 LSIIPAASA 129 (199)
T ss_dssp EEEECCTTS
T ss_pred eeeehhhcc
Confidence 999997643
No 7
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=10.31 E-value=48 Score=33.31 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=23.8
Q ss_pred cchhhHHHHHhhcccccccCcccccccccc
Q 000180 801 IFSPFWNEIIKSLREEDFISNREMDLLSIP 830 (1902)
Q Consensus 801 ~fs~iWNeII~Smr~EdLis~~E~~lL~~p 830 (1902)
+-.++||+||..||....|-||...+=.+|
T Consensus 9 ~at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 9 RATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred hHHHHHHHHHHHHHcCCCcceeeeCCEECC
Confidence 445799999999999999998876654444
No 8
>1t8h_A YLMD protein sequence homologue; rbstp0554, structural genomics, unknown function, PSI, protein structure initiative; 1.80A {Geobacillus stearothermophilus} SCOP: d.194.1.2
Probab=9.48 E-value=1.1e+02 Score=35.67 Aligned_cols=24 Identities=38% Similarity=0.437 Sum_probs=15.5
Q ss_pred cccccc-CCccccccccccchhhhhcccccccCc
Q 000180 1382 IFHITR-GGISKASRVINISEDIYAGFNSTLRQG 1414 (1902)
Q Consensus 1382 ~f~~tr-GGiSKAsk~i~lsEDifaG~n~~lRgG 1414 (1902)
.+++|| ||||++ .|+++|.-+.-|
T Consensus 28 ~~fttR~GGvS~~---------py~slNlg~~vg 52 (277)
T 1t8h_A 28 AGLTTKHGGESKG---------PFASLNMGLHVG 52 (277)
T ss_dssp EEEECSCSCCCCG---------GGCSCCCCSSSS
T ss_pred EEEEcCCCCccCC---------cccceeccCCCC
Confidence 345666 888776 577777655443
No 9
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=7.20 E-value=2.5e+02 Score=22.89 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.5
Q ss_pred HhHHHHHHHHHHHHHhHHHHhcccc
Q 000180 726 MDLHIWYTLLSAIIGGVMGARARLG 750 (1902)
Q Consensus 726 lDtqiWY~I~sti~g~~~G~~~~LG 750 (1902)
-|+||.-+.+.++.-++..+ |||
T Consensus 4 sd~Qi~iAL~~Al~~~iLA~--rLg 26 (31)
T 1jb0_M 4 TDTQVYVALVIALLPAVLAF--RLS 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHH
Confidence 49999999999999999887 777
No 10
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=6.95 E-value=58 Score=42.33 Aligned_cols=18 Identities=44% Similarity=0.831 Sum_probs=13.7
Q ss_pred EeccccccccceeeccCCcee
Q 000180 1578 YFGRTILHGGAKYRATGRGFV 1598 (1902)
Q Consensus 1578 y~~~tilhGGAkY~aTGRGFv 1598 (1902)
-+-.|-.|| |-+|||||.
T Consensus 282 v~~~tTv~G---YEGtGrgf~ 299 (671)
T 2zpa_A 282 TLLTTTVQG---YEGTGRGFL 299 (671)
T ss_dssp EEEEEEBSS---TTBBCHHHH
T ss_pred EEEEecCCc---CCCcCcccc
Confidence 334566788 999999994
Done!