Query 000180
Match_columns 1902
No_of_seqs 291 out of 419
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 23:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000180.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000180hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfi1 g.41.3.1 (I:1-49) RBP9 13.4 20 0.0014 29.8 0.1 9 361-369 2-10 (49)
2 d1wlna1 b.26.1.2 (A:8-114) Afa 10.2 43 0.0031 31.1 1.4 44 1259-1303 19-73 (107)
3 d1xhba2 c.68.1.17 (A:95-422) P 10.2 49 0.0036 35.1 2.1 34 1277-1310 94-130 (328)
4 d1rw0a_ d.194.1.2 (A:) Hypothe 8.9 48 0.0035 35.2 1.2 13 1381-1393 16-29 (243)
5 d1sq5a_ c.37.1.6 (A:) Pantothe 6.7 2.1E+02 0.015 31.0 5.3 50 1304-1365 57-106 (308)
6 d2yrka1 g.37.1.4 (A:8-55) Zinc 6.3 32 0.0023 28.3 -1.3 12 1328-1339 18-29 (48)
7 d1x4la1 g.39.1.3 (A:8-36) Four 6.0 65 0.0047 23.9 0.3 8 1585-1592 11-18 (29)
8 d1r0va1 c.52.2.1 (A:62-139) Di 5.5 2.6E+02 0.019 23.6 4.0 34 1209-1250 39-72 (78)
9 d2axte1 f.23.38.1 (E:3-84) Cyt 5.1 2.1E+02 0.015 25.5 3.2 28 481-509 6-33 (82)
10 d1h99a1 a.142.1.1 (A:54-168) T 5.1 8.4E+02 0.061 21.3 8.0 86 262-355 23-108 (115)
No 1
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.37 E-value=20 Score=29.81 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=5.7
Q ss_pred cccccchhH
Q 000180 361 ANVRFLPEC 369 (1902)
Q Consensus 361 aNLRFMPEC 369 (1902)
+.+||+|||
T Consensus 2 s~~rFC~eC 10 (49)
T d1twfi1 2 TTFRFCRDC 10 (49)
T ss_dssp CCCCBCSSS
T ss_pred CceecChhc
Confidence 456666666
No 2
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.21 E-value=43 Score=31.08 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=29.6
Q ss_pred ccceeEEeecCCCCccCCCCC-cC----------ccchhhhccccccccccccccc
Q 000180 1259 KDQEIYSIRLPGDPKLGEGKP-EN----------QNHAIIFTRGEAIQTIDMNQDN 1303 (1902)
Q Consensus 1259 ~~~~~yrikLpG~pilGeGKp-eN----------QNhAiiFtRGE~lQtIDmNQDn 1303 (1902)
....+|+++ +|...+|-|++ +| ..||.|-..++.+.+.|.+..|
T Consensus 19 ~~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 19 DKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp SCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred CccEEEEEC-CCCEEECCCCCCCCcEEECCcceeeeEEEEEEcccccEEecCCCCc
Confidence 344556666 44555555542 22 4699999999999999988776
No 3
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.18 E-value=49 Score=35.06 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=26.6
Q ss_pred CCCcCccchhhhcccccccccccc---ccchHHHHHh
Q 000180 1277 GKPENQNHAIIFTRGEAIQTIDMN---QDNYLEEAMK 1310 (1902)
Q Consensus 1277 GKpeNQNhAiiFtRGE~lQtIDmN---QDnYleE~lK 1310 (1902)
|.+...|.|+--++||+|=.+|.. ..++||+.++
T Consensus 94 G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~ 130 (328)
T d1xhba2 94 GLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLA 130 (328)
T ss_dssp CHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHH
T ss_pred cchHHHHHHHHhhhcceeeecCcccccChhHHHHHHH
Confidence 677788999999999999888866 5667776543
No 4
>d1rw0a_ d.194.1.2 (A:) Hypothetical protein yfiH {Salmonella typhi [TaxId: 90370]}
Probab=8.87 E-value=48 Score=35.16 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=9.7
Q ss_pred ccccccc-CCcccc
Q 000180 1381 RIFHITR-GGISKA 1393 (1902)
Q Consensus 1381 ~~f~~tr-GGiSKA 1393 (1902)
+.+++|| ||+||.
T Consensus 16 ~~~fTtR~GGvS~~ 29 (243)
T d1rw0a_ 16 AACSSTRIGGVSLS 29 (243)
T ss_dssp EEEEECSCSCCCCT
T ss_pred EEEEEECCCCccCC
Confidence 5677777 888876
No 5
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=6.73 E-value=2.1e+02 Score=31.02 Aligned_cols=50 Identities=26% Similarity=0.498 Sum_probs=36.9
Q ss_pred hHHHHHhhhhhHHHHhhhcCCCCCeeeccccceecccchhhccccccchhhHHHHhhHhhcc
Q 000180 1304 YLEEAMKMRNLLEEFRTDHGIRPPSILGVREHVFTGSVSSLAWFMSNQETSFVTLGQRVLAN 1365 (1902)
Q Consensus 1304 YleE~lKmrnlL~Ef~~~~~~~~~~IlG~RE~IFt~~v~sLa~f~a~qE~sF~Tl~qR~la~ 1365 (1902)
|.+++.+.....++|....+.+.|-||| .+|++|| || +||....+..|+.
T Consensus 57 ~~~~~~~~~~~~~~fl~~~~~k~P~iIG-----IaG~sgS------GK-STla~~L~~lL~~ 106 (308)
T d1sq5a_ 57 YISSNLRRQAVLEQFLGTNGQRIPYIIS-----IAGSVAV------GK-STTARVLQALLSR 106 (308)
T ss_dssp HHHHHHHHHHHHHHHHTCC-CCCCEEEE-----EEECTTS------SH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEE-----EeCCCCC------CC-cHHHHHHHHHHhh
Confidence 4578888888899998777778889998 5666654 44 6777777777763
No 6
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.28 E-value=32 Score=28.28 Aligned_cols=12 Identities=33% Similarity=0.836 Sum_probs=8.5
Q ss_pred eeeccccceecc
Q 000180 1328 SILGVREHVFTG 1339 (1902)
Q Consensus 1328 ~IlG~RE~IFt~ 1339 (1902)
+=+-+|+||||.
T Consensus 18 ~~~SvrdHiFsk 29 (48)
T d2yrka1 18 ARLSIRDHIFSK 29 (48)
T ss_dssp SSSCHHHHHTSH
T ss_pred eecchHhhhhhH
Confidence 345578999983
No 7
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.00 E-value=65 Score=23.90 Aligned_cols=8 Identities=50% Similarity=0.899 Sum_probs=6.5
Q ss_pred cccceeec
Q 000180 1585 HGGAKYRA 1592 (1902)
Q Consensus 1585 hGGAkY~a 1592 (1902)
+||+||++
T Consensus 11 ~gg~kyis 18 (29)
T d1x4la1 11 LGGTKYIS 18 (29)
T ss_dssp SSSCSCEE
T ss_pred cCCceEEE
Confidence 68888875
No 8
>d1r0va1 c.52.2.1 (A:62-139) Dimeric tRNA splicing endonuclease, domains 2 and 4 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=5.55 E-value=2.6e+02 Score=23.56 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=27.0
Q ss_pred CCcchHHHHHHHHhCCCcEEEeeccccccccCCCccceEEEE
Q 000180 1209 KAPEAADIALLLQRNEALRVAFIHVEDSSAADGKVSKEFFSK 1250 (1902)
Q Consensus 1209 ~~~~a~di~~Lm~~~p~LrVAyide~~~~~~~g~~~~~yyS~ 1250 (1902)
+.-+.++|..--+.+..||.|-+||+. +..||.|
T Consensus 39 ktirmeeiaekarnfdelrlavvdees--------eityfrv 72 (78)
T d1r0va1 39 KTIRMEEIAEKARNFDELRLAVVDEES--------EITYFRV 72 (78)
T ss_dssp SCBCHHHHHHHTTTCSSCEEEEECTTC--------CEEEEEE
T ss_pred ceeeHHHHHHHhcCchheeeeeecccc--------eEEEEEE
Confidence 345678888999999999999999865 3567765
No 9
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.12 E-value=2.1e+02 Score=25.49 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=22.0
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 000180 481 RTFLHLYRSFHRLWIFLFVMFQALTILAF 509 (1902)
Q Consensus 481 RSflHl~rsF~RiWif~il~fq~miiiAf 509 (1902)
|.|..+++|. |-|++|....-++.|..|
T Consensus 6 RpF~dIitsi-RYWvIHsiTIPslFiaGw 33 (82)
T d2axte1 6 RPFSDIITSV-RYWVIHSITIPALFIAGW 33 (82)
T ss_dssp SCHHHHHHCH-HHHHHHHHHHHHHHHHHH
T ss_pred ccHHhhhhee-eEEEEEeecccHHHHhhh
Confidence 7888888886 899999988877655443
No 10
>d1h99a1 a.142.1.1 (A:54-168) Transcriptional antiterminator LicT {Bacillus subtilis [TaxId: 1423]}
Probab=5.07 E-value=8.4e+02 Score=21.31 Aligned_cols=86 Identities=7% Similarity=-0.011 Sum_probs=45.0
Q ss_pred hHHHHHHHHhCcccccccchHHHHHHHHhhhhhccCCCCCCCCcccHHHHHHHHHhhhhhHHHHHHHhcccccccccccc
Q 000180 262 DMFDLLEYVFGFQKDNIRNQRENIVLAIANAQARLGIPADADPKIDEKAINEVFLKVLDNYIKWCKYLRKRLAWNSFQAI 341 (1902)
Q Consensus 262 DIfd~L~~~FGFQkDNVrNQrEHLmlLLaN~~sR~~p~~~~~~~L~~~aI~~lh~k~faNYkKWCk~Lg~~~~~~~~~~~ 341 (1902)
+|.+.++...|..-| .+-+..|++.|...-.|+........ -..+-+...+.+.+.-=++=|+.+..+-....
T Consensus 23 ~ii~~v~~~l~~~l~--~~~~~~L~~Hl~~~i~R~~~~~~i~~-~~~~~i~~~y~~~y~~a~~~~~~ie~~~~i~i---- 95 (115)
T d1h99a1 23 EIISYAKLQLGKKLN--DSIYVSLTDHINFAIQRNQKGLDIKN-ALLWETKRLYKDEFAIGKEALVMVKNKTGVSL---- 95 (115)
T ss_dssp HHHHHHHHHHCSCCC--THHHHHHHHHHHHHHHHHHTTCCCCC-TTHHHHHHHTHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred HHHHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHHHcCCCCCC-chHHHHHHHhHHHHHHHHHHHHHHHHHHCCCC----
Confidence 777888888886543 34466666666666666543322111 11334444444433211122333333222222
Q ss_pred chHHHHHHHHHHHH
Q 000180 342 NRDRKLFLVSLYFL 355 (1902)
Q Consensus 342 ~~~~~ll~iaLYLL 355 (1902)
+++.+.|+++||.
T Consensus 96 -~e~Ei~yi~lhi~ 108 (115)
T d1h99a1 96 -PEDEAGFIALHIV 108 (115)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHH
Confidence 2678999999985
Done!