BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000184
(1890 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 4/209 (1%)
Query: 1190 PSNKI-VMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLV 1248
P++ I +V+AG +E L K L+ + +EAA L I E + V LV
Sbjct: 33 PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 92
Query: 1249 AVLRLGGRGARYSAAKALESLFSA-DHIRNAESARQAVQPLVEILNTGLEREQHAAIAAL 1307
+L + AA+AL ++ S D A V+ LV++L + Q A AL
Sbjct: 93 KLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL 152
Query: 1308 VRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAA 1367
+ S P A+ A V+ V+VL ++L+S S K A L + G T +
Sbjct: 153 ANIAS-GPDEAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD 210
Query: 1368 ARCVEPLVSLLVTEFSPAQHSVVRALDKL 1396
A VE L LL + S Q RAL+ +
Sbjct: 211 AGGVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRA 257
++ LVKLLT S TQ LA + S ++ A + L+KLL S ++ V+
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQK 62
Query: 258 EAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 317
EAA AL +++ +A + I + G+ ++ + E +Q+ A ALANI
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE---------VQKEAARALANI 113
Query: 318 SGGLSNVIXXXXXXXXXXXXPAQVADTLG--ALASALMIYDSKAESTKPSDPLIVEQTLV 375
+ G I + D G L L DS+
Sbjct: 114 ASGPDEAIKA-------------IVDAGGVEVLVKLLTSTDSE----------------- 143
Query: 376 NQFKPRLPFLVQERTIEALASLYGNPLLSIK-LENSEAKRLLVGLITMATNEVQEELVRA 434
VQ+ ALA++ P +IK + ++ +LV L+T +EVQ+E RA
Sbjct: 144 ----------VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 193
Query: 435 LLKLCNNEGSLWRAL 449
L + + S +A+
Sbjct: 194 LANIASGPTSAIKAI 208
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 17/239 (7%)
Query: 416 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGRXXXXXXXXXXXXXXXXXXXCSVA 475
LV L+T +E Q+E R L ++ + S +A+ +
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 476 LLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVE 534
L +++ D++ AI AGG+ LV++L S ++ ++++A L N+ + E I+A V+
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 126
Query: 535 SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT--------ISQLTALLTSDLPE 586
A V L+ LL + + ++ AA+ L ++ D A + L LLTS E
Sbjct: 127 -AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE 185
Query: 587 SKVYVLDALKSMLS--VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 643
+ AL ++ S + I+ G VE + K+L+ST E Q ++ AL I
Sbjct: 186 VQKEAARALANIASGPTSAIKAIVDAG-----GVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 39.3 bits (90), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 108/240 (45%), Gaps = 10/240 (4%)
Query: 28 QLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAAT 87
+L S+ S +KE + R L E+ +A A+ + V VLV LL S V+ +AA
Sbjct: 9 KLLTSTDSETQKEAA-RDLAEIASGPASAIKAI-VDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 88 VLGSLCKENELRVK-VXXXXXXXXXXXXXKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKI 146
L ++ + +K + S+ +E Q AA+ + ++ G + K
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI---KA 123
Query: 147 FSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLT 206
G V VL + L + + + V AL N+++ + A V AGG+++LVKLLT
Sbjct: 124 IVDAGGVEVLVKLLTS---TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 180
Query: 207 LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSL 266
S Q LA + S ++ A + L KLL S ++ V+ EA AL+++
Sbjct: 181 STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS-TDSEVQKEAQRALENI 239
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 3/180 (1%)
Query: 387 QERTIEALASLYGNPLLSIK-LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSL 445
Q+ LA + P +IK + ++ +LV L+T +EVQ+E RAL + +
Sbjct: 19 QKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 446 WRALQGRXXXXXXXXXXXXXXXXXXXCSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 505
+A+ + L +++ D++ AI AGG+ LV++L
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 506 SGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 564
S ++ ++++A L N+ + E I+A V+ A V L+ LL + + ++ AA+ L ++
Sbjct: 139 STDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANI 197
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 618 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVE 677
VE ++K+L+ST E Q ++A ALA I + ++ + + ++KLL + E
Sbjct: 88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE 147
Query: 678 ASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 728
A+R LA I E + A V + LV L S EV ++A ALAN+
Sbjct: 148 AARALANIASGPDEAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 615 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECI 674
ND VE ++K+L+ST ETQ ++A LA I ++ + + ++KLL +
Sbjct: 2 ND-VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEV 60
Query: 675 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 728
EA+R LA I E + A V + LV L S EV ++A ALAN+
Sbjct: 61 QKEAARALANIASGPDEAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 582 SDLPE-SKVYVLDALKSMLSVV-SFSDILREGSAANDAV------ETMIKILSSTKEETQ 633
S+LP+ ++ D ++ LS FS IL +G+ AV ++++LSS E+
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 634 AKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 693
++ AL+ I + ++ I L ++++LL +E IL EA L+ I E
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 694 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAE 741
+ A + AL LV L SP ++ ++A AL+N+ ++A+ E
Sbjct: 132 Q-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 479 LLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN-HSEDIRACVESAD 537
+LS+ N+ + A+ AG +P LVQ+L S + + +++ L N+ + +E I+A ++ A
Sbjct: 39 ILSDGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AG 96
Query: 538 AVPAL---------------LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS 582
A+PAL LW L N ++ G E + D + L LL+S
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-------DAGALPALVQLLSS 149
Query: 583 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 640
P ++ + +AL ++ ++ S + ++ A+E + ++ S E+ Q ++ AL
Sbjct: 150 --PNEQI-LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 9/155 (5%)
Query: 582 SDLPE-SKVYVLDALKSMLSVV-SFSDILREGSAANDAV------ETMIKILSSTKEETQ 633
S+LP+ ++ D ++ LS FS IL +G+ AV ++++LSS E+
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 634 AKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 693
++ AL+ I + ++ I L ++++LL +E IL EA L+ I E
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 694 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 728
+ A + AL LV L SP ++ ++A AL+N+
Sbjct: 132 Q-AVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Score = 33.9 bits (76), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 102/220 (46%), Gaps = 28/220 (12%)
Query: 479 LLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN-HSEDIRACVESAD 537
+LS+ N+ + A+ AG +P LVQ+L S + + +++ L N+ + +E I+A ++ A
Sbjct: 39 ILSDGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AG 96
Query: 538 AVPAL---------------LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS 582
A+PAL LW L N ++ G E + D + L LL+S
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-------DAGALPALVQLLSS 149
Query: 583 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 642
P ++ + +AL ++ ++ S + + A+ ++++LSS E+ ++ AL+
Sbjct: 150 --PNEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 206
Query: 643 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCL 682
I + +++ L + +L +E I EA L
Sbjct: 207 IASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 617 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILV 676
A+ ++++LSS E+ ++ AL+ I + ++ I L ++++LL +E IL
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 677 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 736
EA L+ I E + A + AL LV L SP ++ ++A AL+N+ +
Sbjct: 157 EALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215
Query: 737 KAIAE 741
+A+ E
Sbjct: 216 QAVKE 220
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 75/170 (44%), Gaps = 6/170 (3%)
Query: 1665 LVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRS--HQCEETAAR 1722
LV+LL S +E + +L AL + S +A+ ++GA+ AL++LL S Q + A
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW 118
Query: 1723 LLEVLLNNGKIRESKATKSAILP-LSQYLLDPXXXXXXXXXXXXXXXGDLFQNEGLARSA 1781
L + + G + + LP L Q L P NE +
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVI 177
Query: 1782 DAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQ 1831
DA A ALV +L P E++ A+ AL N+ K+AV EAG ++
Sbjct: 178 DA-GALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALE 225
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 36.2 bits (82), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 10/163 (6%)
Query: 1270 FSADHIRNAESARQAV--QPLVEILNTGLEREQHAAIAALVRLLSENPS----RALAVAD 1323
F I N E A V ++E++ + +Q +A +LLS+ P+ ++
Sbjct: 5 FHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG 64
Query: 1324 VEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS 1383
V V+ L R NC+++ + A L + GN+ V A V + LL +EF
Sbjct: 65 VVARFVEFLKR--KENCTLQFES-AWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121
Query: 1384 PAQHSVVRALDKLVDDEQLA-ELVAAHGAVIPLVGLLYGRNYM 1425
Q V AL + D + + V + PL+ L +N +
Sbjct: 122 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL 164
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 10/163 (6%)
Query: 1270 FSADHIRNAESARQAV--QPLVEILNTGLEREQHAAIAALVRLLSENPS----RALAVAD 1323
F I N E A V ++E++ + +Q +A +LLS+ P+ ++
Sbjct: 2 FHEAQISNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG 61
Query: 1324 VEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFS 1383
V V+ L R NC+++ + A L + GN+ V A V + LL +EF
Sbjct: 62 VVARFVEFLKR--KENCTLQFES-AWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 118
Query: 1384 PAQHSVVRALDKLVDDEQLA-ELVAAHGAVIPLVGLLYGRNYM 1425
Q V AL + D + + V + PL+ L +N +
Sbjct: 119 DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRL 161
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 34.7 bits (78), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1789 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPE 1843
ALV +L P E + AI L NL++Y K AV A G+Q ++ L+ ++P+
Sbjct: 107 ALVRMLSS-PVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLLNKNNPK 160
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 1189 CPSNKIVMVEAGALEALTKYLS 1210
CPSNK +VEAG ++AL K+L+
Sbjct: 218 CPSNKPAIVEAGGMQALGKHLT 239
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 34.7 bits (78), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 550
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 83 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 142
Query: 551 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 603
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 143 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 197
Query: 604 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 659
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 198 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 256
Query: 660 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 719
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 257 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 310
Query: 720 QAT 722
T
Sbjct: 311 DKT 313
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 473 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 531
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 22 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 81
Query: 532 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 591
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 82 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 125
Query: 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651
L +A+E ++ + +S K + L+ + +K
Sbjct: 126 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 164
Query: 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 709
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 165 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 221
Query: 710 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 751
V A A+ N++ +++ + + +LPA R+L
Sbjct: 222 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 34.7 bits (78), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 550
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 82 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 141
Query: 551 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 603
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 142 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 196
Query: 604 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 659
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 197 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 255
Query: 660 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 719
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 256 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 309
Query: 720 QAT 722
T
Sbjct: 310 DKT 312
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 473 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 531
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 21 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 80
Query: 532 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 591
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 81 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 124
Query: 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651
L +A+E ++ + +S K + L+ + +K
Sbjct: 125 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 163
Query: 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 709
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 164 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 220
Query: 710 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 751
V A A+ N++ +++ + + +LPA R+L
Sbjct: 221 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 34.7 bits (78), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 550
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 83 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 142
Query: 551 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 603
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 143 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 197
Query: 604 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 659
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 198 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 256
Query: 660 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 719
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 257 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 310
Query: 720 QAT 722
T
Sbjct: 311 DKT 313
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 473 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 531
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 22 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 81
Query: 532 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 591
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 82 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 125
Query: 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651
L +A+E ++ + +S K + L+ + +K
Sbjct: 126 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 164
Query: 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 709
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 165 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 221
Query: 710 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 751
V A A+ N++ +++ + + +LPA R+L
Sbjct: 222 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 263
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 550
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 81 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 140
Query: 551 ANGKEIAAKTLNHLIH----KSDTATISQ 575
+ A TL++L + D + +SQ
Sbjct: 141 PSLIRTATWTLSNLCRGKKPQPDWSVVSQ 169
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 473 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 531
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 20 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 79
Query: 532 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 591
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 80 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 123
Query: 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651
L +A+E ++ + +S K + L+ + +K
Sbjct: 124 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 162
Query: 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 709
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 163 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 219
Query: 710 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 751
V A A+ N++ +++ + + +LPA R+L
Sbjct: 220 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 103/243 (42%), Gaps = 23/243 (9%)
Query: 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 550
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 82 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 141
Query: 551 ANGKEIAAKTLNHLIH----KSDTATISQLTALLTSDLPESKVYVLDA---LKSMLSVVS 603
+ A TL++L + D + +SQ L +Y +D + + ++
Sbjct: 142 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA-----KLIYSMDTETLVDACWAISY 196
Query: 604 FSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIFETRKDLR-ESSIAVKT 659
SD +E A V + ++++LS Q + A+ I T DL+ + I
Sbjct: 197 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV-TGNDLQTQVVINAGV 255
Query: 660 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 719
L ++ LL E I EA ++ I E + A + + + PLV L LEVAE
Sbjct: 256 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ-AVIDANLIPPLVKL-----LEVAE 309
Query: 720 QAT 722
T
Sbjct: 310 DKT 312
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 473 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 531
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 21 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 80
Query: 532 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 591
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 81 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 124
Query: 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651
L +A+E ++ + +S K + L+ + +K
Sbjct: 125 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 163
Query: 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 709
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 164 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 220
Query: 710 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 751
V A A+ N++ +++ + + +LPA R+L
Sbjct: 221 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 262
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 550
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 81 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 140
Query: 551 ANGKEIAAKTLNHLIH----KSDTATISQ 575
+ A TL++L + D + +SQ
Sbjct: 141 PSLIRTATWTLSNLCRGKKPQPDWSVVSQ 169
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 473 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 531
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 20 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 79
Query: 532 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 591
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 80 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 123
Query: 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651
L +A+E ++ + +S K + L+ + +K
Sbjct: 124 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 162
Query: 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 709
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 163 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 219
Query: 710 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 751
V A A+ N++ +++ + + +LPA R+L
Sbjct: 220 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 261
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 79/167 (47%), Gaps = 27/167 (16%)
Query: 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCN-HSEDIRACVESADAVPAL------ 542
A+ AG +P LVQ+L S + + +++ L N+ + +E I+A ++ A A+PAL
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSS 107
Query: 543 ---------LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 593
LW L N ++ G E + D + L LL+S P ++ + +
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVI-------DAGALPALVQLLSS--PNEQI-LQE 157
Query: 594 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 640
AL ++ ++ S + ++ A+E + ++ S E+ Q ++ AL
Sbjct: 158 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 204
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 617 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILV 676
A+ ++++LSS E+ ++ AL+ I + ++ I L ++++LL +E IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 677 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 736
EA L+ I E + A + AL LV L SP ++ ++A AL+N+ +
Sbjct: 115 EALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 737 KAIAE 741
+A+ E
Sbjct: 174 QAVKE 178
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 33.9 bits (76), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 617 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILV 676
A+ ++++LSS E+ ++ AL+ I + ++ I L ++++LL +E IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 677 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 736
EA L+ I E + A + AL LV L SP ++ ++A AL+N+ +
Sbjct: 115 EALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 737 KAIAEEIILPATRVL 751
+A+ E PA L
Sbjct: 174 QAVKEAGAEPALEQL 188
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 27/170 (15%)
Query: 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCN-HSEDIRACVESADAVPAL------ 542
A+ AG +P LVQ+L S + + +++ L N+ + +E I+A ++ A A+PAL
Sbjct: 49 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSS 107
Query: 543 ---------LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD 593
LW L N ++ G E + D + L LL+S P ++ + +
Sbjct: 108 PNEQILQEALWALSNIASGGNEQIQAVI-------DAGALPALVQLLSS--PNEQI-LQE 157
Query: 594 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 643
AL ++ ++ S + ++ A + ++ SS E+ Q ++ AL I
Sbjct: 158 ALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKI 207
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 33.9 bits (76), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 550
+ A +P +Q+L +GS + KE + L N+ S D R V +A+ +L L +
Sbjct: 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK 228
Query: 551 ANGKEIAAKTLNHLIH----KSDTATISQ 575
+ A TL++L + D + +SQ
Sbjct: 229 PSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 43/282 (15%)
Query: 473 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE-DSASILRNLCNHSEDIRA 531
+V +LS E+ + AG +P LV+ + + + ++A L N+ + +
Sbjct: 108 TVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167
Query: 532 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 591
V ADAVP + LL GS KE A L ++ D + + YV
Sbjct: 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV----------------AGDSTDYRDYV 211
Query: 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651
L +A+E ++ + +S K + L+ + +K
Sbjct: 212 LQC---------------------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250
Query: 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSP--LVVL 709
+ S+ + L ++ KL+ LV+A C A +LS + AV D P LV L
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDA--CWAISYLSDGPQEAIQAVI-DVRIPKRLVEL 307
Query: 710 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVL 751
V A A+ N++ +++ + + +LPA R+L
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 33.9 bits (76), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 676 VEASRCLAAIFLSVRENRE--VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 733
VE +RC A ++ +RE +A + LV + GSPV V A L NL+L E
Sbjct: 70 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 129
Query: 734 VSEKAI 739
++ A+
Sbjct: 130 GAKMAV 135
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 676 VEASRCLAAIFLSVRENRE--VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 733
VE +RC A ++ +RE +A + LV + GSPV V A L NL+L E
Sbjct: 70 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 129
Query: 734 VSEKAI 739
++ A+
Sbjct: 130 GAKMAV 135
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 828 AWQVLAEFPKSITPIVSSIADATPLL-QD----KAIEILSRLCRDQPAVLGDEVTGASGC 882
+Q L ++ + +T + + P++ +D +AI+ILSR ++ P +LGD G +
Sbjct: 1 GYQALEKYSRDLTALARA-GKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAI 59
Query: 883 ISSIARRVISCTNP 896
+ +A +++ P
Sbjct: 60 VEGLAIKIVQGDVP 73
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 1806 AIC-ALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSS-DPETSVQAAMFVKLLFSNHTIQE 1863
A+C AL+NLV NK VAE GV +L ++ + D ET Q + L SN ++
Sbjct: 71 AVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN 130
Query: 1864 YASSETVRAITGKITLAL 1881
+E + +T I +
Sbjct: 131 LMITEALLTLTENIIIPF 148
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 676 VEASRCLAAIFLSVRENRE--VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 733
VE +RC A ++ +RE +A + LV GSPV V A L NL+L E
Sbjct: 16 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQE 75
Query: 734 VSEKAI 739
++ A+
Sbjct: 76 GAKXAV 81
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 1789 ALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSD 1841
ALVN+L P + + AI L NL+++ K AV AGG+Q ++ L+ ++
Sbjct: 238 ALVNMLGS-PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 289
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 1592 IHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ---ADPSLPHALWESAASVLSS 1648
+++L + KA +AL+W EGG+ EL++ +LQ + PS H L+ S+
Sbjct: 392 LNLLYELCAKAGAEVALSWAK--GGEGGL-ELARKVLQTLESRPSNFHVLYNLDLSIKDK 448
Query: 1649 ILQFSSEFY 1657
I + ++E Y
Sbjct: 449 IAKIATEIY 457
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 1592 IHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ---ADPSLPHALWESAASVLSS 1648
+++L + KA +AL+W EGG+ EL++ +LQ + PS H L+ S+
Sbjct: 392 LNLLYELCAKAGAEVALSWAK--GGEGGL-ELARKVLQTLESRPSNFHVLYNLDLSIKDK 448
Query: 1649 ILQFSSEFY 1657
I + ++E Y
Sbjct: 449 IAKIATEIY 457
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 31.2 bits (69), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 473 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC-NHSEDIRA 531
+ A L L ND K + GIP LV +L+ + + L+N+ +D +
Sbjct: 68 AAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127
Query: 532 CVESADAVPALLWLLK 547
+++ D VPAL+ LL+
Sbjct: 128 AIKNCDGVPALVRLLR 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,500,447
Number of Sequences: 62578
Number of extensions: 1578098
Number of successful extensions: 4801
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 4366
Number of HSP's gapped (non-prelim): 366
length of query: 1890
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1777
effective length of database: 7,902,023
effective search space: 14041894871
effective search space used: 14041894871
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)