Query 000184
Match_columns 1890
No_of_seqs 793 out of 3660
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 22:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1E-223 3E-228 2210.3 175.5 1869 10-1883 3-1873(2102)
2 PLN03200 cellulose synthase-in 100.0 4E-123 8E-128 1244.0 127.8 1516 65-1864 13-1726(2102)
3 COG5064 SRP1 Karyopherin (impo 100.0 2.4E-40 5.2E-45 357.6 28.5 417 413-868 73-498 (526)
4 KOG0166 Karyopherin (importin) 100.0 1.2E-38 2.6E-43 378.5 36.7 415 413-868 68-488 (514)
5 KOG4224 Armadillo repeat prote 100.0 8.5E-31 1.8E-35 286.4 26.8 441 195-773 46-495 (550)
6 KOG4224 Armadillo repeat prote 100.0 2E-30 4.3E-35 283.5 27.5 442 105-689 46-495 (550)
7 KOG0166 Karyopherin (importin) 100.0 1.4E-27 3.1E-32 284.4 38.5 409 198-772 68-487 (514)
8 KOG1824 TATA-binding protein-i 100.0 3.1E-24 6.8E-29 260.1 56.3 1014 415-1608 9-1186(1233)
9 COG5064 SRP1 Karyopherin (impo 100.0 7.8E-27 1.7E-31 253.3 27.4 420 107-647 72-498 (526)
10 PF05804 KAP: Kinesin-associat 99.9 4.2E-19 9.1E-24 225.3 48.9 526 17-652 120-656 (708)
11 PF05804 KAP: Kinesin-associat 99.9 1.3E-18 2.8E-23 220.9 50.1 517 107-738 124-658 (708)
12 KOG1048 Neural adherens juncti 99.8 1.1E-19 2.3E-24 223.4 24.2 427 64-569 232-687 (717)
13 KOG1048 Neural adherens juncti 99.8 5.2E-17 1.1E-21 200.0 23.8 409 153-686 235-683 (717)
14 KOG4199 Uncharacterized conser 99.7 8.5E-16 1.8E-20 168.4 28.8 369 22-489 61-450 (461)
15 KOG2122 Beta-catenin-binding p 99.7 6.8E-16 1.5E-20 194.3 23.6 368 69-482 201-601 (2195)
16 KOG2122 Beta-catenin-binding p 99.7 3.2E-15 7E-20 188.4 22.4 367 1255-1653 207-603 (2195)
17 KOG4500 Rho/Rac GTPase guanine 99.7 1.1E-13 2.5E-18 156.4 32.0 449 76-646 53-520 (604)
18 KOG2171 Karyopherin (importin) 99.6 3.9E-11 8.5E-16 153.5 55.4 466 66-569 5-507 (1075)
19 KOG2171 Karyopherin (importin) 99.6 1.2E-09 2.5E-14 140.3 67.8 478 198-772 6-505 (1075)
20 KOG4500 Rho/Rac GTPase guanine 99.6 2.9E-13 6.3E-18 153.2 30.8 425 386-815 58-517 (604)
21 PRK09687 putative lyase; Provi 99.6 3.5E-14 7.7E-19 165.7 21.8 258 1240-1564 21-279 (280)
22 PRK09687 putative lyase; Provi 99.6 7.4E-14 1.6E-18 163.0 22.3 256 1282-1605 22-279 (280)
23 KOG4199 Uncharacterized conser 99.6 1.9E-12 4.2E-17 142.5 30.7 330 105-530 103-449 (461)
24 PRK13800 putative oxidoreducta 99.6 2.5E-13 5.4E-18 185.4 28.6 278 1240-1605 619-896 (897)
25 PRK13800 putative oxidoreducta 99.5 1.3E-12 2.8E-17 178.5 27.2 277 1199-1564 620-896 (897)
26 PF10508 Proteasom_PSMB: Prote 99.4 7.7E-10 1.7E-14 141.2 42.5 430 21-513 4-451 (503)
27 KOG1293 Proteins containing ar 99.4 7.1E-10 1.5E-14 133.8 38.0 495 206-772 19-534 (678)
28 KOG1222 Kinesin associated pro 99.4 1.6E-10 3.5E-15 132.4 28.1 377 1302-1698 282-672 (791)
29 PF10508 Proteasom_PSMB: Prote 99.4 1.5E-09 3.2E-14 138.7 39.1 369 372-748 41-439 (503)
30 KOG1824 TATA-binding protein-i 99.3 1.3E-06 2.9E-11 108.9 60.4 510 1252-1837 619-1154(1233)
31 PF01602 Adaptin_N: Adaptin N 99.3 8.7E-09 1.9E-13 135.6 39.3 496 34-644 18-523 (526)
32 PF04826 Arm_2: Armadillo-like 99.3 2.4E-10 5.2E-15 130.3 20.8 227 449-720 8-252 (254)
33 KOG1293 Proteins containing ar 99.3 2.6E-09 5.6E-14 129.1 30.0 507 114-739 17-542 (678)
34 KOG1222 Kinesin associated pro 99.2 1.4E-08 3.1E-13 116.8 31.8 413 12-534 250-673 (791)
35 PF01602 Adaptin_N: Adaptin N 99.2 2.5E-09 5.4E-14 140.8 30.2 501 1246-1813 8-522 (526)
36 KOG1241 Karyopherin (importin) 99.2 2.1E-06 4.6E-11 105.6 47.9 775 23-912 4-856 (859)
37 PF04826 Arm_2: Armadillo-like 99.1 4.3E-09 9.4E-14 120.1 22.0 190 372-568 15-207 (254)
38 PTZ00429 beta-adaptin; Provisi 99.1 7.2E-07 1.6E-11 116.6 40.5 499 374-965 37-546 (746)
39 PTZ00429 beta-adaptin; Provisi 99.0 1.2E-06 2.6E-11 114.5 42.2 515 1282-1865 31-557 (746)
40 KOG1241 Karyopherin (importin) 99.0 2E-06 4.3E-11 105.8 40.8 504 198-775 4-534 (859)
41 cd00020 ARM Armadillo/beta-cat 99.0 3E-09 6.4E-14 109.3 14.3 117 449-565 3-119 (120)
42 KOG2023 Nuclear transport rece 99.0 1.8E-07 4E-12 112.4 30.4 493 412-942 175-757 (885)
43 KOG2023 Nuclear transport rece 99.0 7.7E-07 1.7E-11 107.2 33.9 609 107-775 129-821 (885)
44 cd00020 ARM Armadillo/beta-cat 99.0 5.1E-09 1.1E-13 107.6 13.9 118 407-524 3-120 (120)
45 TIGR02270 conserved hypothetic 98.9 8.4E-08 1.8E-12 117.4 22.8 243 1241-1567 53-296 (410)
46 cd00256 VATPase_H VATPase_H, r 98.9 1.2E-06 2.6E-11 106.4 31.1 343 64-481 52-424 (429)
47 TIGR02270 conserved hypothetic 98.9 1E-07 2.2E-12 116.6 22.1 243 1368-1689 53-296 (410)
48 COG5215 KAP95 Karyopherin (imp 98.9 4.1E-05 8.8E-10 91.1 40.7 471 207-731 16-530 (858)
49 PRK14707 hypothetical protein; 98.9 0.0029 6.2E-08 86.4 73.7 570 1152-1739 705-1308(2710)
50 KOG0946 ER-Golgi vesicle-tethe 98.8 4.7E-06 1E-10 102.6 30.4 375 237-712 21-418 (970)
51 KOG0168 Putative ubiquitin fus 98.8 2.4E-06 5.2E-11 105.8 28.1 253 413-669 169-437 (1051)
52 KOG0168 Putative ubiquitin fus 98.8 5.8E-06 1.3E-10 102.5 30.7 419 199-711 170-653 (1051)
53 COG1413 FOG: HEAT repeat [Ener 98.7 4.9E-07 1.1E-11 111.3 21.4 252 1369-1690 43-305 (335)
54 KOG1242 Protein containing ada 98.7 1.2E-06 2.6E-11 107.0 23.1 377 369-776 96-488 (569)
55 COG1413 FOG: HEAT repeat [Ener 98.7 1.5E-06 3.2E-11 107.0 24.1 278 1200-1564 43-332 (335)
56 COG5215 KAP95 Karyopherin (imp 98.7 0.00071 1.5E-08 80.9 43.8 612 35-755 18-693 (858)
57 KOG1789 Endocytosis protein RM 98.6 0.0032 6.9E-08 79.8 48.6 542 188-755 1419-2143(2235)
58 cd00256 VATPase_H VATPase_H, r 98.6 1.5E-05 3.2E-10 97.1 28.8 345 369-730 53-425 (429)
59 KOG0213 Splicing factor 3b, su 98.6 0.00056 1.2E-08 83.9 39.6 566 108-774 551-1144(1172)
60 PRK14707 hypothetical protein; 98.6 0.018 3.8E-07 79.2 80.7 397 1201-1609 794-1203(2710)
61 KOG0946 ER-Golgi vesicle-tethe 98.4 0.00069 1.5E-08 84.3 36.4 334 107-533 23-408 (970)
62 KOG1062 Vesicle coat complex A 98.4 0.00027 5.9E-09 88.3 33.1 420 1245-1741 110-593 (866)
63 KOG0567 HEAT repeat-containing 98.4 9.6E-06 2.1E-10 88.7 18.3 255 1244-1567 5-280 (289)
64 KOG2759 Vacuolar H+-ATPase V1 98.4 0.00013 2.8E-09 85.3 27.3 353 64-481 64-437 (442)
65 KOG3678 SARM protein (with ste 98.4 1.2E-05 2.6E-10 92.9 18.4 274 445-770 172-451 (832)
66 KOG2160 Armadillo/beta-catenin 98.4 3.2E-05 6.9E-10 89.5 22.0 187 464-688 94-283 (342)
67 KOG0213 Splicing factor 3b, su 98.3 0.0045 9.8E-08 76.4 38.9 526 1242-1859 507-1067(1172)
68 KOG1060 Vesicle coat complex A 98.3 0.001 2.2E-08 82.8 33.8 523 1246-1860 39-573 (968)
69 PF03224 V-ATPase_H_N: V-ATPas 98.3 1.1E-05 2.3E-10 97.6 17.3 222 65-292 55-294 (312)
70 KOG2160 Armadillo/beta-catenin 98.3 2.2E-05 4.8E-10 90.8 18.2 181 387-567 100-283 (342)
71 KOG0211 Protein phosphatase 2A 98.3 0.00032 6.9E-09 91.2 30.1 545 1249-1849 89-656 (759)
72 KOG1242 Protein containing ada 98.2 0.00063 1.4E-08 83.9 29.3 375 372-774 58-447 (569)
73 KOG0567 HEAT repeat-containing 98.2 5E-05 1.1E-09 83.3 17.6 226 1240-1522 34-278 (289)
74 KOG2759 Vacuolar H+-ATPase V1 98.2 0.00014 3E-09 85.0 21.7 341 372-730 68-438 (442)
75 KOG1062 Vesicle coat complex A 98.2 0.0021 4.5E-08 80.8 31.8 365 1332-1728 112-540 (866)
76 PF05536 Neurochondrin: Neuroc 98.1 0.0061 1.3E-07 78.5 36.7 239 19-268 4-261 (543)
77 KOG0212 Uncharacterized conser 98.1 0.00012 2.6E-09 87.7 18.9 322 1367-1693 82-410 (675)
78 KOG0211 Protein phosphatase 2A 98.1 0.0016 3.5E-08 84.8 30.7 398 1293-1713 247-645 (759)
79 KOG4413 26S proteasome regulat 98.1 0.0017 3.7E-08 72.7 25.6 396 1377-1837 51-461 (524)
80 KOG1060 Vesicle coat complex A 98.1 0.0023 4.9E-08 79.9 29.1 423 1201-1688 72-532 (968)
81 KOG4646 Uncharacterized conser 98.0 5.9E-05 1.3E-09 73.7 11.5 131 411-547 16-147 (173)
82 KOG3678 SARM protein (with ste 98.0 0.00049 1.1E-08 80.0 20.6 268 405-689 174-454 (832)
83 KOG1059 Vesicle coat complex A 98.0 0.0034 7.4E-08 77.7 28.2 401 414-864 147-575 (877)
84 PF03224 V-ATPase_H_N: V-ATPas 98.0 0.00027 6E-09 85.4 19.5 175 617-799 106-294 (312)
85 KOG0212 Uncharacterized conser 98.0 0.0019 4.2E-08 77.7 25.4 420 1251-1689 9-444 (675)
86 KOG1059 Vesicle coat complex A 98.0 0.0096 2.1E-07 73.9 31.6 247 164-524 154-401 (877)
87 COG5181 HSH155 U2 snRNP splice 97.9 0.0058 1.3E-07 73.9 27.8 518 1255-1859 330-872 (975)
88 KOG1061 Vesicle coat complex A 97.9 0.028 6E-07 71.4 34.9 392 411-864 49-451 (734)
89 KOG4413 26S proteasome regulat 97.9 0.0028 6.1E-08 71.0 23.4 394 1287-1709 47-459 (524)
90 COG5240 SEC21 Vesicle coat com 97.9 0.016 3.5E-07 69.8 30.7 481 1286-1837 68-578 (898)
91 COG5181 HSH155 U2 snRNP splice 97.9 0.023 4.9E-07 69.1 32.0 332 412-774 605-949 (975)
92 KOG2259 Uncharacterized conser 97.7 0.00032 7E-09 85.5 14.1 290 1374-1693 203-515 (823)
93 COG5240 SEC21 Vesicle coat com 97.7 0.11 2.4E-06 63.0 34.5 282 456-770 267-554 (898)
94 PF05536 Neurochondrin: Neuroc 97.7 0.02 4.3E-07 73.9 31.2 402 1283-1711 5-460 (543)
95 KOG4646 Uncharacterized conser 97.7 0.00026 5.6E-09 69.3 10.4 127 366-493 13-139 (173)
96 KOG1061 Vesicle coat complex A 97.7 0.0032 6.9E-08 79.5 21.5 362 1284-1689 87-453 (734)
97 KOG1077 Vesicle coat complex A 97.6 0.051 1.1E-06 67.5 30.4 384 1286-1703 77-501 (938)
98 KOG2973 Uncharacterized conser 97.6 0.014 3.1E-07 65.8 23.2 276 198-523 5-314 (353)
99 PF13646 HEAT_2: HEAT repeats; 97.6 0.00015 3.3E-09 69.5 7.1 85 1371-1476 1-87 (88)
100 KOG1789 Endocytosis protein RM 97.5 0.64 1.4E-05 60.2 64.2 322 1303-1629 1745-2141(2235)
101 PF13646 HEAT_2: HEAT repeats; 97.5 0.00013 2.7E-09 70.1 5.6 86 1495-1604 1-88 (88)
102 KOG4151 Myosin assembly protei 97.5 0.0034 7.4E-08 79.7 18.6 272 490-770 464-740 (748)
103 PF00514 Arm: Armadillo/beta-c 97.5 0.00015 3.2E-09 58.1 4.4 41 484-524 1-41 (41)
104 KOG2259 Uncharacterized conser 97.4 0.0031 6.7E-08 77.3 16.5 289 1410-1729 198-511 (823)
105 PF14664 RICTOR_N: Rapamycin-i 97.4 0.047 1E-06 66.9 25.9 312 399-729 13-363 (371)
106 KOG1077 Vesicle coat complex A 97.3 0.5 1.1E-05 59.2 33.8 311 376-743 153-501 (938)
107 PF00514 Arm: Armadillo/beta-c 97.3 0.00046 1E-08 55.2 5.1 41 526-566 1-41 (41)
108 KOG1943 Beta-tubulin folding c 97.3 1.5 3.2E-05 58.2 48.4 455 374-864 384-879 (1133)
109 KOG2973 Uncharacterized conser 97.2 0.046 1E-06 61.9 21.5 265 1202-1472 5-305 (353)
110 KOG1078 Vesicle coat complex C 97.1 0.15 3.2E-06 64.7 26.5 306 1253-1607 183-494 (865)
111 PF14664 RICTOR_N: Rapamycin-i 97.1 0.13 2.9E-06 62.9 26.2 302 1286-1607 28-363 (371)
112 KOG2734 Uncharacterized conser 97.1 0.1 2.2E-06 61.8 23.2 258 84-462 103-370 (536)
113 COG5369 Uncharacterized conser 96.9 0.0065 1.4E-07 72.7 11.9 300 429-769 407-739 (743)
114 KOG1517 Guanine nucleotide bin 96.9 0.039 8.4E-07 71.4 19.3 246 387-650 487-737 (1387)
115 KOG1943 Beta-tubulin folding c 96.9 0.94 2E-05 60.0 31.7 340 1242-1608 341-705 (1133)
116 COG5369 Uncharacterized conser 96.9 0.0045 9.7E-08 74.0 10.0 305 173-523 408-740 (743)
117 KOG4535 HEAT and armadillo rep 96.8 0.14 3.1E-06 60.9 21.8 187 468-685 406-601 (728)
118 KOG1517 Guanine nucleotide bin 96.8 0.05 1.1E-06 70.4 19.0 201 452-689 511-734 (1387)
119 PF10165 Ric8: Guanine nucleot 96.8 0.071 1.5E-06 67.5 20.7 274 175-482 2-337 (446)
120 PF10165 Ric8: Guanine nucleot 96.8 0.08 1.7E-06 67.0 21.2 255 392-647 3-339 (446)
121 KOG1078 Vesicle coat complex C 96.7 3.3 7.2E-05 53.2 35.6 273 1498-1814 250-531 (865)
122 KOG2062 26S proteasome regulat 96.7 0.045 9.8E-07 68.4 16.9 266 453-763 413-688 (929)
123 KOG1058 Vesicle coat complex C 96.6 0.18 3.9E-06 63.5 21.5 372 1288-1712 25-443 (948)
124 KOG0915 Uncharacterized conser 96.5 2.6 5.7E-05 57.9 32.4 514 109-729 864-1426(1702)
125 PF09759 Atx10homo_assoc: Spin 96.5 0.01 2.2E-07 57.2 7.9 66 470-535 3-70 (102)
126 PF12348 CLASP_N: CLASP N term 96.2 0.024 5.3E-07 65.4 10.6 186 463-649 17-210 (228)
127 smart00185 ARM Armadillo/beta- 96.1 0.009 1.9E-07 47.7 4.8 39 485-523 2-40 (41)
128 KOG0915 Uncharacterized conser 96.1 1.9 4.2E-05 59.1 28.3 337 1205-1561 823-1196(1702)
129 KOG2734 Uncharacterized conser 96.1 0.95 2.1E-05 54.1 22.4 270 40-318 102-399 (536)
130 PF12348 CLASP_N: CLASP N term 96.0 0.052 1.1E-06 62.7 12.0 185 1293-1484 17-209 (228)
131 PF13513 HEAT_EZ: HEAT-like re 95.9 0.0097 2.1E-07 51.2 4.2 55 715-769 1-55 (55)
132 PF09759 Atx10homo_assoc: Spin 95.9 0.028 6.1E-07 54.2 7.5 67 428-494 3-71 (102)
133 COG5096 Vesicle coat complex, 95.9 6.3 0.00014 51.9 30.7 368 1292-1712 28-404 (757)
134 PF13513 HEAT_EZ: HEAT-like re 95.7 0.02 4.2E-07 49.3 5.2 54 1383-1437 1-55 (55)
135 smart00185 ARM Armadillo/beta- 95.6 0.024 5.2E-07 45.2 5.3 40 527-566 2-41 (41)
136 KOG1058 Vesicle coat complex C 95.4 0.79 1.7E-05 58.1 19.1 339 1251-1652 108-464 (948)
137 PF12460 MMS19_C: RNAPII trans 95.3 5.6 0.00012 50.4 27.6 348 385-749 17-413 (415)
138 PF12460 MMS19_C: RNAPII trans 95.3 7.2 0.00016 49.4 28.4 345 1330-1691 2-396 (415)
139 COG5096 Vesicle coat complex, 95.3 5.7 0.00012 52.3 27.2 139 1285-1440 57-196 (757)
140 PRK09169 hypothetical protein; 95.3 27 0.00059 51.1 44.3 85 1151-1237 158-243 (2316)
141 COG5231 VMA13 Vacuolar H+-ATPa 95.0 0.63 1.4E-05 53.1 15.2 247 461-729 157-427 (432)
142 KOG1240 Protein kinase contain 95.0 0.66 1.4E-05 61.8 17.5 289 414-729 425-724 (1431)
143 KOG4151 Myosin assembly protei 94.8 0.21 4.6E-06 64.0 12.5 237 446-726 497-737 (748)
144 PF05004 IFRD: Interferon-rela 94.8 1.8 4E-05 51.9 20.0 205 416-646 48-258 (309)
145 KOG4535 HEAT and armadillo rep 94.8 0.35 7.6E-06 57.8 13.2 297 468-770 270-602 (728)
146 KOG0414 Chromosome condensatio 94.7 25 0.00053 47.9 46.2 179 617-820 920-1105(1251)
147 COG5231 VMA13 Vacuolar H+-ATPa 94.3 1.4 3.1E-05 50.3 16.0 255 419-687 157-428 (432)
148 KOG1240 Protein kinase contain 94.1 1.7 3.6E-05 58.3 18.1 314 370-714 423-748 (1431)
149 PF11841 DUF3361: Domain of un 93.9 0.74 1.6E-05 48.4 12.0 122 447-569 5-134 (160)
150 PF05004 IFRD: Interferon-rela 93.8 1.7 3.7E-05 52.2 16.8 200 19-224 42-256 (309)
151 KOG1788 Uncharacterized conser 93.6 15 0.00032 48.3 24.3 274 176-547 664-960 (2799)
152 COG5116 RPN2 26S proteasome re 93.4 1.2 2.6E-05 54.5 14.1 125 614-757 549-677 (926)
153 PF12755 Vac14_Fab1_bd: Vacuol 93.1 0.18 3.8E-06 48.9 5.6 96 1426-1525 2-97 (97)
154 KOG2062 26S proteasome regulat 93.1 3.9 8.4E-05 52.2 18.1 274 1284-1606 414-694 (929)
155 PF12755 Vac14_Fab1_bd: Vacuol 93.0 0.48 1E-05 45.9 8.4 94 675-771 3-96 (97)
156 PF12717 Cnd1: non-SMC mitotic 92.7 0.63 1.4E-05 51.2 10.1 109 1509-1629 2-112 (178)
157 KOG2025 Chromosome condensatio 91.8 4.2 9.1E-05 51.6 16.2 105 1327-1436 85-190 (892)
158 PF08569 Mo25: Mo25-like; Int 91.6 5.4 0.00012 48.2 16.9 202 613-819 73-285 (335)
159 KOG2025 Chromosome condensatio 91.5 53 0.0012 42.4 26.6 208 453-687 85-294 (892)
160 PF11841 DUF3361: Domain of un 91.3 4.6 9.9E-05 42.7 13.6 118 190-317 5-129 (160)
161 PF05918 API5: Apoptosis inhib 90.9 16 0.00034 46.9 20.5 124 1380-1522 33-160 (556)
162 PF05918 API5: Apoptosis inhib 90.8 8.2 0.00018 49.4 17.9 130 456-596 26-158 (556)
163 PF12717 Cnd1: non-SMC mitotic 90.7 4.2 9E-05 44.8 13.8 93 629-731 1-93 (178)
164 PF11698 V-ATPase_H_C: V-ATPas 90.6 0.68 1.5E-05 46.2 6.6 70 412-481 44-114 (119)
165 PF11698 V-ATPase_H_C: V-ATPas 90.3 0.82 1.8E-05 45.6 6.9 74 615-688 42-116 (119)
166 PF08045 CDC14: Cell division 90.0 3 6.5E-05 47.8 12.0 101 211-318 106-206 (257)
167 PF13764 E3_UbLigase_R4: E3 ub 89.9 20 0.00043 48.4 21.1 126 192-323 113-262 (802)
168 PF08045 CDC14: Cell division 89.7 2.1 4.6E-05 49.0 10.6 98 427-524 107-207 (257)
169 PF07814 WAPL: Wings apart-lik 89.5 9.4 0.0002 47.2 16.9 247 16-280 17-311 (361)
170 PF02985 HEAT: HEAT repeat; I 89.4 0.43 9.4E-06 35.4 3.2 29 1412-1440 2-30 (31)
171 KOG1967 DNA repair/transcripti 88.8 5.8 0.00013 52.1 14.3 148 572-724 868-1018(1030)
172 KOG1820 Microtubule-associated 88.7 7.5 0.00016 52.2 16.0 203 1493-1713 253-459 (815)
173 KOG1832 HIV-1 Vpr-binding prot 88.5 6.7 0.00014 50.7 14.2 102 423-537 674-785 (1516)
174 KOG2956 CLIP-associating prote 88.2 17 0.00038 44.4 16.9 189 16-224 282-476 (516)
175 PF02985 HEAT: HEAT repeat; I 88.1 0.88 1.9E-05 33.7 4.1 29 618-646 2-30 (31)
176 KOG1832 HIV-1 Vpr-binding prot 87.8 36 0.00078 44.5 19.8 159 486-656 592-783 (1516)
177 KOG2032 Uncharacterized conser 87.3 9.7 0.00021 46.8 14.2 145 1288-1440 263-416 (533)
178 PF13764 E3_UbLigase_R4: E3 ub 87.1 90 0.0019 42.4 24.4 245 63-316 115-406 (802)
179 KOG1788 Uncharacterized conser 87.0 1.2E+02 0.0027 40.5 25.6 258 433-711 664-960 (2799)
180 PF04078 Rcd1: Cell differenti 86.9 63 0.0014 37.2 19.6 201 423-655 7-227 (262)
181 KOG2274 Predicted importin 9 [ 86.9 1.3E+02 0.0027 40.4 25.5 187 76-272 502-693 (1005)
182 PRK09169 hypothetical protein; 86.9 2.1E+02 0.0045 42.9 46.0 92 1155-1251 122-214 (2316)
183 PF08569 Mo25: Mo25-like; Int 86.8 43 0.00093 40.7 19.6 217 1659-1878 75-304 (335)
184 KOG1991 Nuclear transport rece 86.8 1.3E+02 0.0029 40.6 27.3 441 1131-1590 385-873 (1010)
185 KOG2032 Uncharacterized conser 86.5 96 0.0021 38.7 22.2 146 1539-1691 215-373 (533)
186 PF12719 Cnd3: Nuclear condens 86.5 15 0.00032 44.3 15.8 170 538-714 27-210 (298)
187 COG5116 RPN2 26S proteasome re 86.4 4.8 0.0001 49.5 11.0 159 457-635 520-681 (926)
188 PF14225 MOR2-PAG1_C: Cell mor 86.1 60 0.0013 38.0 19.7 179 495-685 60-252 (262)
189 PF07814 WAPL: Wings apart-lik 85.9 23 0.00049 43.8 17.3 86 378-463 30-116 (361)
190 KOG4653 Uncharacterized conser 85.7 25 0.00054 46.3 17.2 179 1249-1440 734-919 (982)
191 KOG2956 CLIP-associating prote 85.5 35 0.00076 42.0 17.4 173 467-645 301-477 (516)
192 KOG1967 DNA repair/transcripti 85.5 15 0.00032 48.5 15.2 149 615-765 866-1018(1030)
193 PF12719 Cnd3: Nuclear condens 85.4 6.8 0.00015 47.2 12.2 164 578-755 34-210 (298)
194 KOG3036 Protein involved in ce 85.4 40 0.00086 38.0 16.3 155 467-653 93-254 (293)
195 PF04063 DUF383: Domain of unk 85.2 3.5 7.6E-05 45.5 8.6 119 426-546 10-156 (192)
196 KOG3036 Protein involved in ce 84.8 42 0.00091 37.8 16.2 144 389-534 98-256 (293)
197 PF01347 Vitellogenin_N: Lipop 83.5 15 0.00033 49.5 15.7 169 1411-1606 396-587 (618)
198 KOG1566 Conserved protein Mo25 82.9 1.1E+02 0.0023 36.1 20.4 230 612-866 75-314 (342)
199 PF11701 UNC45-central: Myosin 82.8 3.5 7.5E-05 44.3 7.2 134 384-522 19-157 (157)
200 smart00638 LPD_N Lipoprotein N 82.6 30 0.00064 46.1 17.6 164 1538-1724 393-570 (574)
201 PF11701 UNC45-central: Myosin 82.4 5.8 0.00013 42.6 8.7 140 1330-1474 6-152 (157)
202 KOG2999 Regulator of Rac1, req 80.9 68 0.0015 40.2 17.5 176 65-245 83-263 (713)
203 KOG0414 Chromosome condensatio 80.9 2.5E+02 0.0054 39.1 40.2 101 1751-1866 935-1038(1251)
204 KOG4653 Uncharacterized conser 80.8 27 0.0006 45.9 14.9 183 67-269 729-919 (982)
205 KOG1020 Sister chromatid cohes 80.5 2.9E+02 0.0062 39.5 34.5 146 411-570 816-964 (1692)
206 PF12031 DUF3518: Domain of un 79.7 8.3 0.00018 43.2 8.7 85 386-470 140-233 (257)
207 PF06371 Drf_GBD: Diaphanous G 79.3 11 0.00023 41.9 10.0 109 412-523 67-186 (187)
208 KOG1991 Nuclear transport rece 79.2 2.6E+02 0.0055 38.2 48.1 615 77-729 16-756 (1010)
209 PF10363 DUF2435: Protein of u 79.0 4.9 0.00011 38.6 6.0 83 1541-1629 6-88 (92)
210 PF04063 DUF383: Domain of unk 78.8 15 0.00031 40.8 10.4 105 1303-1408 15-142 (192)
211 KOG2999 Regulator of Rac1, req 77.9 30 0.00064 43.2 13.3 153 412-566 84-242 (713)
212 KOG2274 Predicted importin 9 [ 77.9 2.1E+02 0.0045 38.5 21.3 215 506-729 461-688 (1005)
213 KOG1020 Sister chromatid cohes 77.5 3.5E+02 0.0075 38.8 41.0 105 196-319 816-921 (1692)
214 PF14668 RICTOR_V: Rapamycin-i 76.6 12 0.00026 34.2 7.3 68 1299-1369 3-70 (73)
215 COG5218 YCG1 Chromosome conden 76.2 77 0.0017 40.0 16.0 103 1327-1440 91-197 (885)
216 KOG2611 Neurochondrin/leucine- 75.8 1.9E+02 0.0042 35.8 18.8 157 612-773 52-227 (698)
217 PF01347 Vitellogenin_N: Lipop 75.6 49 0.0011 44.6 16.6 122 106-259 486-613 (618)
218 PF13251 DUF4042: Domain of un 75.2 52 0.0011 36.1 13.3 111 620-730 44-174 (182)
219 smart00638 LPD_N Lipoprotein N 75.2 43 0.00093 44.6 15.7 199 18-257 355-567 (574)
220 KOG3665 ZYG-1-like serine/thre 75.1 1.9E+02 0.0041 39.2 21.2 177 434-667 494-676 (699)
221 COG5218 YCG1 Chromosome conden 73.8 1.2E+02 0.0027 38.3 16.9 173 453-646 91-267 (885)
222 KOG1820 Microtubule-associated 73.7 35 0.00075 46.2 13.7 191 618-820 255-446 (815)
223 PF14500 MMS19_N: Dos2-interac 73.3 1.2E+02 0.0027 35.5 16.7 128 1554-1689 98-237 (262)
224 PF06371 Drf_GBD: Diaphanous G 73.2 6.7 0.00015 43.5 6.3 79 146-224 102-186 (187)
225 PF14225 MOR2-PAG1_C: Cell mor 72.1 2.1E+02 0.0045 33.7 19.2 154 1425-1594 77-243 (262)
226 PF03130 HEAT_PBS: PBS lyase H 71.1 2 4.4E-05 30.7 1.0 27 1426-1463 1-27 (27)
227 PF04078 Rcd1: Cell differenti 71.0 34 0.00073 39.4 10.9 143 1223-1366 72-227 (262)
228 KOG2611 Neurochondrin/leucine- 70.9 99 0.0022 38.1 15.0 137 1285-1424 13-166 (698)
229 PF12530 DUF3730: Protein of u 70.3 1.6E+02 0.0034 34.0 16.7 132 419-566 9-151 (234)
230 KOG1949 Uncharacterized conser 67.4 22 0.00048 45.4 9.1 181 1497-1689 178-370 (1005)
231 COG5656 SXM1 Importin, protein 66.3 4.2E+02 0.0092 35.0 23.7 286 453-775 408-715 (970)
232 KOG4464 Signaling protein RIC- 64.6 3.4E+02 0.0073 33.2 20.6 140 368-507 44-199 (532)
233 COG5098 Chromosome condensatio 64.0 80 0.0017 40.5 12.8 142 413-569 894-1040(1128)
234 PF06025 DUF913: Domain of Unk 62.7 1.2E+02 0.0025 37.9 14.4 94 455-549 108-208 (379)
235 PF03130 HEAT_PBS: PBS lyase H 62.6 4 8.7E-05 29.2 1.1 27 1258-1294 1-27 (27)
236 PF11865 DUF3385: Domain of un 62.6 44 0.00096 36.0 9.5 145 1411-1566 11-156 (160)
237 smart00567 EZ_HEAT E-Z type HE 60.1 9.9 0.00022 27.8 2.8 28 1425-1463 2-29 (30)
238 KOG0301 Phospholipase A2-activ 60.0 3.3E+02 0.0071 35.5 17.2 143 617-765 590-740 (745)
239 COG5098 Chromosome condensatio 59.9 81 0.0018 40.5 11.9 113 618-733 301-418 (1128)
240 KOG1949 Uncharacterized conser 59.2 1.1E+02 0.0025 39.5 13.0 194 1367-1568 127-332 (1005)
241 PF11707 Npa1: Ribosome 60S bi 58.8 4.2E+02 0.009 32.4 18.3 158 413-570 58-241 (330)
242 PF12530 DUF3730: Protein of u 58.2 3.4E+02 0.0074 31.3 19.7 135 498-646 3-152 (234)
243 PF14668 RICTOR_V: Rapamycin-i 57.3 37 0.00081 31.0 6.5 66 470-537 4-70 (73)
244 PF06025 DUF913: Domain of Unk 56.9 4.8E+02 0.01 32.5 21.8 124 411-535 106-243 (379)
245 KOG1248 Uncharacterized conser 55.6 7.8E+02 0.017 34.6 52.6 186 1245-1440 700-899 (1176)
246 PF10363 DUF2435: Protein of u 54.8 33 0.0007 33.1 6.1 71 618-690 5-75 (92)
247 KOG2933 Uncharacterized conser 53.9 60 0.0013 38.0 8.9 141 412-565 89-233 (334)
248 PF08167 RIX1: rRNA processing 53.7 1.1E+02 0.0024 33.2 10.7 115 658-775 25-147 (165)
249 cd03567 VHS_GGA VHS domain fam 53.3 62 0.0013 33.9 8.3 73 1537-1609 37-117 (139)
250 KOG1243 Protein kinase [Genera 52.4 1.2E+02 0.0025 39.7 12.0 186 451-685 328-513 (690)
251 KOG2137 Protein kinase [Signal 52.0 3E+02 0.0066 36.3 15.5 135 615-757 388-523 (700)
252 PF06685 DUF1186: Protein of u 51.2 4.5E+02 0.0098 30.5 16.0 73 1280-1358 70-143 (249)
253 cd03561 VHS VHS domain family; 51.2 1.4E+02 0.0031 30.9 10.8 72 197-268 38-112 (133)
254 PF12031 DUF3518: Domain of un 49.7 42 0.00091 37.9 6.7 83 468-551 139-230 (257)
255 KOG1243 Protein kinase [Genera 49.0 3.8E+02 0.0083 35.3 15.7 152 655-817 327-515 (690)
256 PF11864 DUF3384: Domain of un 48.8 5E+02 0.011 33.5 17.5 69 618-686 252-329 (464)
257 KOG2933 Uncharacterized conser 48.3 2.1E+02 0.0045 33.8 12.0 100 617-729 130-233 (334)
258 COG5209 RCD1 Uncharacterized p 48.2 1.2E+02 0.0026 33.7 9.5 139 1303-1445 120-273 (315)
259 cd03569 VHS_Hrs_Vps27p VHS dom 47.0 1.3E+02 0.0028 31.7 9.7 108 21-135 4-114 (142)
260 cd03569 VHS_Hrs_Vps27p VHS dom 46.7 1.8E+02 0.0039 30.6 10.7 73 196-268 41-114 (142)
261 PF08324 PUL: PUL domain; Int 46.6 1.3E+02 0.0028 35.6 11.0 141 1223-1367 85-241 (268)
262 KOG1566 Conserved protein Mo25 45.9 5.9E+02 0.013 30.3 18.8 198 533-732 75-288 (342)
263 cd03568 VHS_STAM VHS domain fa 44.4 35 0.00076 36.0 5.0 74 1536-1609 35-111 (144)
264 cd03561 VHS VHS domain family; 43.9 1.7E+02 0.0037 30.3 10.0 105 23-135 2-112 (133)
265 KOG0891 DNA-dependent protein 43.7 2.8E+02 0.0062 42.4 15.3 269 1334-1612 488-767 (2341)
266 KOG3665 ZYG-1-like serine/thre 43.7 1E+03 0.022 32.4 24.3 195 262-518 494-691 (699)
267 PF12054 DUF3535: Domain of un 43.5 4.9E+02 0.011 33.2 15.8 231 1257-1503 102-364 (441)
268 PF14500 MMS19_N: Dos2-interac 43.3 3.6E+02 0.0078 31.7 13.6 213 620-863 3-234 (262)
269 PF08167 RIX1: rRNA processing 43.3 1.6E+02 0.0034 32.0 10.0 108 618-729 27-142 (165)
270 cd03568 VHS_STAM VHS domain fa 43.2 2.3E+02 0.005 29.9 10.8 72 197-268 38-110 (144)
271 smart00288 VHS Domain present 42.1 2.4E+02 0.0052 29.3 10.7 72 197-268 38-111 (133)
272 KOG1248 Uncharacterized conser 42.1 1.2E+03 0.026 32.9 54.8 221 625-865 663-897 (1176)
273 PF11791 Aconitase_B_N: Aconit 42.0 14 0.00031 38.3 1.5 43 1513-1567 81-123 (154)
274 smart00567 EZ_HEAT E-Z type HE 41.7 22 0.00048 26.0 2.2 29 1510-1550 2-30 (30)
275 PF11865 DUF3385: Domain of un 41.1 1.5E+02 0.0034 31.8 9.4 31 1538-1568 10-41 (160)
276 PF08324 PUL: PUL domain; Int 40.2 2.4E+02 0.0051 33.3 11.9 125 628-752 122-254 (268)
277 KOG2005 26S proteasome regulat 39.6 3.7E+02 0.0081 35.0 13.2 79 1388-1478 622-701 (878)
278 cd03567 VHS_GGA VHS domain fam 39.5 2.2E+02 0.0049 29.8 9.9 106 22-135 2-116 (139)
279 KOG1822 Uncharacterized conser 38.2 1.7E+03 0.036 33.4 20.6 344 140-522 813-1187(2067)
280 KOG2038 CAATT-binding transcri 37.9 7.1E+02 0.015 33.2 15.3 72 700-775 303-374 (988)
281 PLN03076 ARF guanine nucleotid 37.8 5.1E+02 0.011 38.9 16.3 264 584-864 1150-1487(1780)
282 PF14631 FancD2: Fanconi anaem 36.8 1.4E+03 0.03 34.0 20.2 130 624-760 443-572 (1426)
283 smart00288 VHS Domain present 35.9 1.8E+02 0.004 30.1 8.7 104 24-135 3-111 (133)
284 KOG4464 Signaling protein RIC- 34.7 9.6E+02 0.021 29.6 19.8 51 387-442 354-404 (532)
285 PF06685 DUF1186: Protein of u 33.6 3.3E+02 0.0071 31.6 10.9 85 1422-1525 54-143 (249)
286 COG5209 RCD1 Uncharacterized p 32.2 4.1E+02 0.0088 29.8 10.5 143 389-533 119-276 (315)
287 PF11707 Npa1: Ribosome 60S bi 32.2 1E+03 0.022 29.1 16.4 161 660-821 58-241 (330)
288 PF13251 DUF4042: Domain of un 32.1 7E+02 0.015 27.5 12.6 133 469-601 2-175 (182)
289 PF00790 VHS: VHS domain; Int 31.5 3.8E+02 0.0083 28.0 10.4 72 197-268 43-118 (140)
290 KOG2137 Protein kinase [Signal 30.4 3.6E+02 0.0079 35.6 11.5 98 617-720 429-527 (700)
291 PF12054 DUF3535: Domain of un 30.0 4.4E+02 0.0096 33.6 12.4 80 1755-1843 290-369 (441)
292 KOG2038 CAATT-binding transcri 29.4 6.9E+02 0.015 33.3 13.3 91 1365-1465 300-391 (988)
293 PF00790 VHS: VHS domain; Int 28.5 3.2E+02 0.007 28.6 9.2 107 21-135 5-118 (140)
294 PF10274 ParcG: Parkin co-regu 26.9 2.1E+02 0.0046 31.4 7.4 73 617-689 39-111 (183)
295 PF10521 DUF2454: Protein of u 26.9 1.9E+02 0.004 34.5 7.9 72 1537-1608 118-203 (282)
296 PF08506 Cse1: Cse1; InterPro 26.7 5.4E+02 0.012 32.0 12.0 24 617-640 347-370 (370)
297 cd08050 TAF6 TATA Binding Prot 26.4 6.6E+02 0.014 30.8 12.7 138 1286-1440 181-341 (343)
298 PF14726 RTTN_N: Rotatin, an a 25.5 3.4E+02 0.0073 26.6 7.8 67 452-519 29-95 (98)
299 COG5656 SXM1 Importin, protein 25.2 1.8E+03 0.039 29.7 27.4 157 1133-1294 385-553 (970)
300 KOG4231 Intracellular membrane 24.7 93 0.002 38.5 4.7 77 1785-1861 327-403 (763)
301 PF11791 Aconitase_B_N: Aconit 24.4 1.8E+02 0.004 30.5 6.0 44 1423-1477 76-119 (154)
302 KOG0392 SNF2 family DNA-depend 24.3 2.7E+02 0.0058 39.0 9.0 175 1383-1567 143-325 (1549)
303 PF12830 Nipped-B_C: Sister ch 23.8 1E+03 0.022 26.3 13.5 107 616-729 45-166 (187)
304 KOG2676 Uncharacterized conser 22.7 91 0.002 37.0 3.9 65 430-494 375-441 (478)
305 KOG1525 Sister chromatid cohes 22.5 2.6E+03 0.056 30.6 20.2 331 418-769 57-403 (1266)
306 PF12830 Nipped-B_C: Sister ch 22.4 1.6E+02 0.0035 32.6 5.9 69 1540-1612 10-78 (187)
307 PF12074 DUF3554: Domain of un 21.8 1.5E+03 0.033 27.6 17.6 211 538-755 23-257 (339)
308 KOG1848 Uncharacterized conser 21.6 2.2E+03 0.047 31.3 16.5 111 1494-1608 841-958 (1610)
309 PF11864 DUF3384: Domain of un 21.5 1.8E+03 0.039 28.4 21.5 248 551-817 43-330 (464)
310 PF08506 Cse1: Cse1; InterPro 21.4 1.6E+03 0.035 27.8 15.4 130 426-561 226-370 (370)
311 PF09450 DUF2019: Domain of un 21.4 50 0.0011 32.5 1.3 58 1787-1856 49-106 (106)
312 PF08216 CTNNBL: Catenin-beta- 20.5 92 0.002 30.8 2.9 42 83-124 64-105 (108)
313 PF08216 CTNNBL: Catenin-beta- 20.1 2.6E+02 0.0056 27.8 5.8 77 1344-1427 28-104 (108)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-223 Score=2210.26 Aligned_cols=1869 Identities=68% Similarity=0.961 Sum_probs=1773.3
Q ss_pred CCCCCChhhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHH
Q 000184 10 TSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVL 89 (1890)
Q Consensus 10 ~~~~~~~~~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L 89 (1890)
..|+||+++..++..++++|.+.+++.++|+.|+..|..|++.++++|++|+.+.|++|.|+.+|+++++.+|.+++.+|
T Consensus 3 ~~~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL 82 (2102)
T PLN03200 3 SEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVL 82 (2102)
T ss_pred ccccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45999999999999999999998778899999999999999999999999998899999999999999999999999999
Q ss_pred HHhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCch
Q 000184 90 GSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNV 169 (1890)
Q Consensus 90 ~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~ 169 (1890)
.++++.++++.+++..|+||+|+.+|++++.+.|+.|+++|++|+.+...++.+.++++.+|+||.|++++++++..+..
T Consensus 83 ~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 83 GVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 99999999999999999999999999999999999999999999995322555557788999999999999998776766
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcC
Q 000184 170 VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGS 249 (1890)
Q Consensus 170 v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 249 (1890)
++..++.+|+|||..++++++.++++|+||.|+.+|+++++..+.+|+.+|.+++..+++.+..+++.|++|.|+++|++
T Consensus 163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s 242 (2102)
T PLN03200 163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ 242 (2102)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc
Confidence 88889999999999999999989999999999999999999999999999999998877789999999999999999988
Q ss_pred CCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhh
Q 000184 250 GNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLG 329 (1890)
Q Consensus 250 ~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~ 329 (1890)
+++..+|+.|+++|+||+.++++++..++++||+|.|+.++.+++++++++..+..++++|+++|.|+|++.+..+..++
T Consensus 243 g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~ 322 (2102)
T PLN03200 243 GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLG 322 (2102)
T ss_pred CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence 76778999999999999999999999999999999999999999888888888899999999999999999999999999
Q ss_pred ccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhh
Q 000184 330 QSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN 409 (1890)
Q Consensus 330 ~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~ 409 (1890)
+++++++...++.+..|+++|+++.++...+....+++..+.+.|++++++.++..+++++..+|+.++.|+.+++.+.+
T Consensus 323 ~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~ 402 (2102)
T PLN03200 323 ELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH 402 (2102)
T ss_pred HhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Confidence 99999988889999999999999998855444456777788899999999998887899999999999999999999999
Q ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHH
Q 000184 410 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 489 (1890)
Q Consensus 410 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 489 (1890)
.++++.||.++...+.++|..++++|+++|.++.+.++.|.+.|++|.|+++|++++..+|+.|+++|+|++.++++++.
T Consensus 403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999988889999
Q ss_pred HHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000184 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~ 569 (1890)
.++++|+||+|+++|.+++.++|+.|+|+|+|++.+++++|..+.+.|++|+|+++|+++++++++.|+++|.||..+.+
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999877888888899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChh
Q 000184 570 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 649 (1890)
Q Consensus 570 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~ 649 (1890)
...+++++.++.++++..+.+++++++++.......+..+.++...+|++.|+++++++++.+++.|+|+|.+++.++++
T Consensus 563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 99999999999999999999999999999888877776666666789999999999999999999999999999999999
Q ss_pred HHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000184 650 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 650 ~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~ 729 (1890)
+++.++..|+||||+.+|++++.+++++++++|.+++.+..+.++..+++.|++++|+++|++++.++++.|+.+|.||+
T Consensus 643 ~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl 722 (2102)
T PLN03200 643 LCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLL 722 (2102)
T ss_pred HHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776677777899999999999999999999999999999999
Q ss_pred cCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccC-cccchHHH
Q 000184 730 LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS-GSVATSEA 808 (1890)
Q Consensus 730 ~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~-~~v~~~~a 808 (1890)
.+++.+.++...+++++|++++++++++.|++|+|+|.+|.+.++.++.+.+|++++|++.+|+++|+..| +.+...++
T Consensus 723 ~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~a 802 (2102)
T PLN03200 723 SDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEA 802 (2102)
T ss_pred cCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 44554689
Q ss_pred HHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCCccchhhhhccCccchHHHHH
Q 000184 809 LDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIAR 888 (1890)
Q Consensus 809 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~g~~i~~~~~~~~~~~~ 888 (1890)
+++|.++++.+++.++.+|+|..++|.|++++||++|+++++|.+|++|+++|+|||+|||..+|++|..+.+|+.++++
T Consensus 803 l~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (2102)
T PLN03200 803 LEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLAD 882 (2102)
T ss_pred HHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCceeecchhHHHHHhhhchhhHHHhhhccccchhhHHHHHHHHHhhcCCCCcCCCC-ChhHHHHHhhhhhhcc
Q 000184 889 RVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGN-DDKEAISIYRYTSEEA 967 (1890)
Q Consensus 889 ~~l~s~~~~~r~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~ 967 (1890)
|+++|+++++|+||+..+||+||.|++.+++.++++++....|+.||+|+++++.. .+ -+ ....--.+... ....
T Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~-~~~~ 958 (2102)
T PLN03200 883 RIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKK--ES-LSIEIQTPRGFLES-NLFA 958 (2102)
T ss_pred HHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcc--cc-cceeecCCccchhh-hhhc
Confidence 99999999999999999999999999999999999999999999999999987644 11 11 00000001100 0011
Q ss_pred cCCCCCCCCcccccCchhHHHHHHHHhccCCccchhhhhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhc
Q 000184 968 RNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQ 1047 (1890)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 1047 (1890)
+...|..+.|..+.+.+++.|++++..+++.+||+++||+|++|++++++++|.+. +|++++|++++|||++++|+|||
T Consensus 959 ~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~-~q~~~~d~~~~~~~~~ll~~lf~ 1037 (2102)
T PLN03200 959 DGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSN-RQAEFEDSESIWISALLLAILFQ 1037 (2102)
T ss_pred cCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccC-ccccccccHHHHHHHHHHHHHcC
Confidence 23457778899999999999999999999999999999999999999999999665 99999999999999999999999
Q ss_pred chhhhhhhhhhchHHHHHHhhcchhHHhHHhHHHHHHHHHhcCCCcchhhhccccchhhhHHhhcccccchhhHHhhhHh
Q 000184 1048 DRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEE 1127 (1890)
Q Consensus 1048 d~~v~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1127 (1890)
|++|+++|++|++||.|+.+++++|.+|||||||++++++|+|+|++..++||+|+.+|+|.|+|+.++|..+++.|+||
T Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e 1117 (2102)
T PLN03200 1038 DRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEE 1117 (2102)
T ss_pred ChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHhhhhhcccccCccccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCccchhHHHhcCcHHHHHH
Q 000184 1128 FALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTK 1207 (1890)
Q Consensus 1128 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~~A~~~L~~la~~~~~~r~~i~eag~l~~Lv~ 1207 (1890)
|+++++|++.+++.||++++++.+.+.++.||.||++|++.+++.+++..|+..|+.++++++.||.+|+++|+++.|++
T Consensus 1118 ~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~k 1197 (2102)
T PLN03200 1118 FSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTK 1197 (2102)
T ss_pred hhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred HHhcCCcchhHHHHHHHHHHhhcCHHHHHhhhhcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHH
Q 000184 1208 YLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQP 1287 (1890)
Q Consensus 1208 ~L~~~~~~~q~~a~~~ll~~l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~ 1287 (1890)
+++..+.+....+++.++++++.|++.+......+++++|+.+|+.|+...|++|+.+|.+++..+++|..+...|+|||
T Consensus 1198 vLSl~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~p 1277 (2102)
T PLN03200 1198 YLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQP 1277 (2102)
T ss_pred HHHhcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchH
Confidence 99998766678889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHh
Q 000184 1288 LVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAA 1367 (1890)
Q Consensus 1288 Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~ 1367 (1890)
|+.+|..+....+..+..+|.++..++.+++..+.+|++++++.++++|++.++.++++.+..+|..+|+++.++.+..+
T Consensus 1278 Lv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~ 1357 (2102)
T PLN03200 1278 LVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAA 1357 (2102)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHH
Confidence 99999999999999999999999999988888887789999999999999887889999999999999999999999999
Q ss_pred hCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHH
Q 000184 1368 ARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1447 (1890)
Q Consensus 1368 ~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 1447 (1890)
.|++++||.+|.++.+.+.+.++.+|..|++.++.++.+..++++-|++..+-..+....+.|+++|++++.++|.++.+
T Consensus 1358 agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl~~~~~~v~~E 1437 (2102)
T PLN03200 1358 ARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLD 1437 (2102)
T ss_pred hCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHHhCCChHHHHH
Confidence 99999999999997777799999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCC
Q 000184 1448 MVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQ 1527 (1890)
Q Consensus 1448 l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~ 1527 (1890)
+++.|+++.++-+|..-++..+..++++|+.|.+++.+.+.+...++++||+-.|.+++.+.+.|++|+++|.|+.+.|+
T Consensus 1438 mv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~ 1517 (2102)
T PLN03200 1438 MVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQ 1517 (2102)
T ss_pred HHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcc
Confidence 99999999999999997788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000184 1528 CRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIA 1607 (1890)
Q Consensus 1528 ~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~ 1607 (1890)
+.........++|.+|+.+|+|+++.+|+.|+++|+.+..++.+|+++.+.++|+||+++|+++.+..|+.|+++|.|++
T Consensus 1518 ~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~ 1597 (2102)
T PLN03200 1518 CLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESIS 1597 (2102)
T ss_pred hhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhh
Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHHh
Q 000184 1608 LTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVL 1687 (1890)
Q Consensus 1608 ~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L 1687 (1890)
+.||+.+.++|||.+|+|+|.+.||+.++.+|+.|+.+|+|+.+++++++...+++.|++++++.++.++..|..+|..+
T Consensus 1598 ~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~~~ 1677 (2102)
T PLN03200 1598 LSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALLVL 1677 (2102)
T ss_pred cccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999977777999999999999999999999999999
Q ss_pred hcCChhhHHHHHHcccHHHHHHHHccCCcHHHHHHHHHHHhhchhhhhhhhccccccccccccCChHHHHHHHHHHHHHh
Q 000184 1688 ESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLA 1767 (1890)
Q Consensus 1688 ~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~~~a~~al~~L~~~~~~r~~i~~~~~i~~L~~~~~~~~~~~~~~~~la~l~ 1767 (1890)
+.+|++.++.|+++|+|+.|+++|++|+|+|.+++.|+.|.|+.++|+..++|.+|.||.+|+.||+++.|+++.+++++
T Consensus 1678 ~~~d~~~~~~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1757 (2102)
T PLN03200 1678 ERDDSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALA 1757 (2102)
T ss_pred HhcchhHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHHHHhCCCCCCchHH
Q 000184 1768 LGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQ 1847 (1890)
Q Consensus 1768 ~~~~~~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~ 1847 (1890)
+|+.+++||+.+.++..++|+.||++|+++|++|++++|+|||+|++++++++++.++|+|||..+|+|+.|+|+++..+
T Consensus 1758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1837 (2102)
T PLN03200 1758 LGDLFQHEGLARSTDAVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQ 1837 (2102)
T ss_pred hccchhhhhhhhccCcHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccchhhHhhhHHHHHHHHHHHHHHHHH
Q 000184 1848 AAMFVKLLFSNHTIQEYASSETVRAITGKITLALCS 1883 (1890)
Q Consensus 1848 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1883 (1890)
|+.++++||+|||++||+|||+||+||+++|.-+.+
T Consensus 1838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1873 (2102)
T PLN03200 1838 AALLIKLLFSNHTIQEYASSELIRALTAALEKDLWS 1873 (2102)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987654
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=3.5e-123 Score=1244.05 Aligned_cols=1516 Identities=25% Similarity=0.291 Sum_probs=1274.3
Q ss_pred CchHHHHHHhhcC--CHHHHHHHHHHHHHhhccc-hhhHHHHh-cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCC
Q 000184 65 QAVPVLVSLLRSG--SLAVKIQAATVLGSLCKEN-ELRVKVLL-GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKD 140 (1890)
Q Consensus 65 g~v~~Lv~lL~~~--~~~~~~~aa~~L~~L~~~~-~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~ 140 (1890)
..+..++.-|+++ +++.|..++..|..+++.+ ++|..+.. .|+||.|+.+|.+++...+..++.+|.+++. +
T Consensus 13 ~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~----~ 88 (2102)
T PLN03200 13 ASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCK----E 88 (2102)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc----C
Confidence 3456788888877 7788999999999999665 46777775 7999999999999999999999999999998 4
Q ss_pred ccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCC--hhHHHH-HHhcCCHHHHHHhhcCCC---HHHHH
Q 000184 141 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST--EGFWAA-TVQAGGIDILVKLLTLGQ---SSTQA 214 (1890)
Q Consensus 141 ~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~--~~~~~~-i~~~g~v~~Lv~lL~~~~---~~v~~ 214 (1890)
..++..++..|++|+|+++|+.+ ++..+..+.++|.+|+... +.++.. +++.|+||.|+.++++++ ..++.
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~sG---s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~ 165 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKSG---SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEG 165 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCC---CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHH
Confidence 45556677899999999999876 4668889999999999875 555544 568999999999999874 34678
Q ss_pred HHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCC
Q 000184 215 HVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPS 294 (1890)
Q Consensus 215 ~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 294 (1890)
.++.+|.+|+...+.....+++.|++|.|+++|+++ +...+..|+++|.+++.+.++.+..+++.|+||.|+.+|.+++
T Consensus 166 ~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~ 244 (2102)
T PLN03200 166 LLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN 244 (2102)
T ss_pred HHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCC
Confidence 889999999988776667789999999999999985 5789999999999999877889999999999999999997643
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccC------CC-----
Q 000184 295 KEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAES------TK----- 363 (1890)
Q Consensus 295 ~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~------~~----- 363 (1890)
+..++++|+++|.|++.+.+ +++..+.+ .|+++.+++.+...... ..
T Consensus 245 --------~~~VRE~AA~AL~nLAs~s~-------------e~r~~Iv~-aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~ 302 (2102)
T PLN03200 245 --------EVSVRAEAAGALEALSSQSK-------------EAKQAIAD-AGGIPALINATVAPSKEFMQGEFAQALQEN 302 (2102)
T ss_pred --------ChHHHHHHHHHHHHHhcCCH-------------HHHHHHHH-CCCHHHHHHHHhCcchhhhccccchHHHHH
Confidence 36899999999999998543 33344444 37788777766511100 00
Q ss_pred ------CC--ChhhhHHHHHhhcCCCCChHHHHHHHHHHHHh---hCCCccc-hhhhhcCcHHHHHHHhcCCCHH-HHHH
Q 000184 364 ------PS--DPLIVEQTLVNQFKPRLPFLVQERTIEALASL---YGNPLLS-IKLENSEAKRLLVGLITMATNE-VQEE 430 (1890)
Q Consensus 364 ------~~--~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L---~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~-v~~~ 430 (1890)
++ +...+++.|.+++.+..+.....-+++++..+ .+++... ..+....+.+.|+.+++++++. +++.
T Consensus 303 AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~ 382 (2102)
T PLN03200 303 AMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQER 382 (2102)
T ss_pred HHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHH
Confidence 00 01123344444443322211122233333333 2222211 1223345668899999987665 4888
Q ss_pred HHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHH
Q 000184 431 LVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAK 510 (1890)
Q Consensus 431 a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 510 (1890)
+..+|+.+..+ +..++.+.+.++++.||.++...+.++|..++++|++|+.++.+.++.+.+.|+++.|+++|.++++.
T Consensus 383 V~eALasl~gN-~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~ 461 (2102)
T PLN03200 383 IIEALASLYGN-AYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQ 461 (2102)
T ss_pred HHHHHHHhcCC-hHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence 99999887766 66788888999999999999999999999999999999988889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHH
Q 000184 511 AKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVY 590 (1890)
Q Consensus 511 ~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~ 590 (1890)
+|+.|+++|++|+..+++++..|.+.|++|+|+++|.++++++++.|+|+|+|++.+++.
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q-------------------- 521 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED-------------------- 521 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH--------------------
Confidence 999999999999988889999999999999999999999999999999999999874321
Q ss_pred HHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCC
Q 000184 591 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG 670 (1890)
Q Consensus 591 a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 670 (1890)
++..+...|++|+|+++|+++++++|+.|+++|.+++.+.+. ..+++|+.++.++
T Consensus 522 -----------------ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~--------~~I~~Lv~LLlsd 576 (2102)
T PLN03200 522 -----------------IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA--------ATISQLTALLLGD 576 (2102)
T ss_pred -----------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch--------hHHHHHHHHhcCC
Confidence 344566789999999999999999999999999999986442 2458999999999
Q ss_pred CHHHHHHHHHHHHHHHccCch--hhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh-cCchHHHHHHhcCcHHHH
Q 000184 671 SECILVEASRCLAAIFLSVRE--NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI-LDSEVSEKAIAEEIILPA 747 (1890)
Q Consensus 671 ~~~v~~~a~~aL~~L~~~~~~--~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~-~~~~~~~~~~~~~~v~~L 747 (1890)
++.++..++.+++++...... ..+......|+++.|+++++++++++++.|+|+|+|++ .+++....++..+++++|
T Consensus 577 d~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPL 656 (2102)
T PLN03200 577 LPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPC 656 (2102)
T ss_pred ChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHH
Confidence 999999999999998653322 23333446899999999999999999999999999999 456677888899999999
Q ss_pred HHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCCCCCCC
Q 000184 748 TRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKP 827 (1890)
Q Consensus 748 ~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~~~~~~ 827 (1890)
+.++++++.+++++++|+|.++++.....+. .++...|++++|+++|++.+.++. +.++.+|.|+++.++.
T Consensus 657 V~LLss~~~~v~keAA~AL~nL~~~~~~~q~--~~~v~~GaV~pL~~LL~~~d~~v~-e~Al~ALanLl~~~e~------ 727 (2102)
T PLN03200 657 IKLLTNNTEAVATQSARALAALSRSIKENRK--VSYAAEDAIKPLIKLAKSSSIEVA-EQAVCALANLLSDPEV------ 727 (2102)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhCCCHHHH--HHHHHcCCHHHHHHHHhCCChHHH-HHHHHHHHHHHcCchH------
Confidence 9999999999999999999999975554432 233668999999999999999999 9999999999876654
Q ss_pred ccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCCccchhhhhccCccchHHHHHHHhhcCCCceeecchhHHH
Q 000184 828 AWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLI 907 (1890)
Q Consensus 828 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~g~~i~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~ 907 (1890)
...+...+.+++|++.+++|++.+|+.|..+|.+||.
T Consensus 728 --~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~----------------------------------------- 764 (2102)
T PLN03200 728 --AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK----------------------------------------- 764 (2102)
T ss_pred --HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh-----------------------------------------
Confidence 3445557889999999999999999999999999954
Q ss_pred HHhhhchhhHHHhhhccccchhhHHHHHHHHHhhcCCCCcCCCCChhHHHHHhhhhhhcccCCCCCCCCcccc--cCchh
Q 000184 908 CAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVI--FGENL 985 (1890)
Q Consensus 908 ~~a~~~~~~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~ 985 (1890)
+++..+++.+...+.+.|.+|+++|++.+ .+.....++|.+++.|+|.+++++|++++|..+ .|+++
T Consensus 765 ------~~~~~~~~~~~~~~~g~v~~l~~~L~~~~-----~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l 833 (2102)
T PLN03200 765 ------HFPVDDVLKDSVQCRGTVLALVDLLNSTD-----LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSL 833 (2102)
T ss_pred ------CCChhHHHHHHHHHhCcHHHHHHHHhcCC-----cchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCch
Confidence 23334556666778999999999999888 567778899999999999999999999999999 99999
Q ss_pred HHHHHHHHhccCCccchhhhhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHH
Q 000184 986 AIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILA 1065 (1890)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~v~~~~~~~~~i~~l~ 1065 (1890)
+|++.|+..++| .+|| |||++|+
T Consensus 834 ~~l~~~l~~~~p-----------------------------------------------~~~~----------kai~il~ 856 (2102)
T PLN03200 834 EPLVRCLAEGHP-----------------------------------------------LVQD----------KAIEILS 856 (2102)
T ss_pred HHHHHHHHcCCh-----------------------------------------------HHHH----------HHHHHHH
Confidence 999999976666 5778 9999999
Q ss_pred HhhcchhHHhHHhHHHHHHHHHhcCCCcchhhhccccch--------hhhHHhhcccccchhhHHhhhHhhhhccCCcHH
Q 000184 1066 NLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAA--------GGLISLLGCADADVQDLLDLSEEFALVRYPDQV 1137 (1890)
Q Consensus 1066 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1137 (1890)
++|+|+ +++++...+.+.+|+.++|++.++ ||.+.|+|++|.+.+..
T Consensus 857 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 911 (2102)
T PLN03200 857 RLCRDQ---------PVVLGDLIANASKCISSLADRIINSSSLEVKIGGTALLICAAKEHRQLV---------------- 911 (2102)
T ss_pred HHhccC---------hhHHHHHHhcccchHHHHHHHHhhcCCceEEecchhhhhhhhhhhHHHH----------------
Confidence 999999 999999999999999999999977 99999999999999887
Q ss_pred HHHhhhhhcccccCccccccHHHHHHhcCC--------------------------------CCCCCCchHHHHHHHHHH
Q 000184 1138 ALERLFRVEDIRVGATSRKAIPALVDLLKP--------------------------------IPDRPGAPFLALGFLIQL 1185 (1890)
Q Consensus 1138 ~~~~l~~~~~~~~~~~~~~~i~~Lv~~L~~--------------------------------~~~~~~~~~~A~~~L~~l 1185 (1890)
++.+..+++.+..|..||+|++. +|+++++++.|+|+|+.+
T Consensus 912 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~ 984 (2102)
T PLN03200 912 -------MEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTVALWLLSVI 984 (2102)
T ss_pred -------HHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchHHHHHHHHH
Confidence 77788899999999999999982 367889999999999999
Q ss_pred hhcCccchhHHHhcCcHHHHHH----HHhcCCc----chhHHHHHH-HHHHhhcCHHHHHhhhhcCcHHHHHHHHhcCCh
Q 000184 1186 AKDCPSNKIVMVEAGALEALTK----YLSLGPQ----DATEEAATD-LLGILFSSAEIRRHESAFAAVSQLVAVLRLGGR 1256 (1890)
Q Consensus 1186 a~~~~~~r~~i~eag~l~~Lv~----~L~~~~~----~~q~~a~~~-ll~~l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 1256 (1890)
+.+++.||..|+|+|+++.|.+ |++. ++ |....++.+ ++++||+|+++++.....+++|.|..+|++++.
T Consensus 985 ~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~-~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1063 (2102)
T PLN03200 985 ASHDAKSKLAIMEAGGIEVLTEKLASYTSN-RQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEET 1063 (2102)
T ss_pred HcCCccchhhhhhcccHHHHHHHHHhhccC-ccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHhhhhhHHH
Confidence 9999999999999999999999 5555 44 666777777 999999999999999999999999999999888
Q ss_pred hHHHHHHHH--------------------------------------------------------HHHhhccchhhhhhh
Q 000184 1257 GARYSAAKA--------------------------------------------------------LESLFSADHIRNAES 1280 (1890)
Q Consensus 1257 ~~r~~Aa~a--------------------------------------------------------L~~L~~~~~~r~~i~ 1280 (1890)
-+|||||++ |.+||+.++.|....
T Consensus 1064 ~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~~ir~~~~ 1143 (2102)
T PLN03200 1064 IDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVEDIRVGAT 1143 (2102)
T ss_pred HHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhhhhcchHH
Confidence 888888876 567778888999999
Q ss_pred hcCChHHHHHHhccCChH--HHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCC
Q 000184 1281 ARQAVQPLVEILNTGLER--EQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGN 1358 (1890)
Q Consensus 1281 ~~~~i~~Lv~lL~~~~~~--~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~ 1358 (1890)
.+++||+||++|++.+++ .|..|+..|..|+.+++.++..| ++.|+++.|.++++..++......+..+|..++.+
T Consensus 1144 a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~m--aeaGAle~L~kvLSl~~s~s~e~a~~ElL~IL~~~ 1221 (2102)
T PLN03200 1144 ARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAM--AEAGALDALTKYLSLGPQDSTEEAASELLRILFSS 1221 (2102)
T ss_pred HHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHH--HHcCCHHHHHHHHHhcCccchhHHHHHHHHHHhCC
Confidence 999999999999998874 48899999999998875555555 48999999999998765555667778899999999
Q ss_pred hhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhc
Q 000184 1359 TRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLG 1438 (1890)
Q Consensus 1359 ~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~ 1438 (1890)
++.+......+++++|+.+|+.++...|++|+.+|.+++..++.++.....|+++||+.|+.+++...++.+..+|.++.
T Consensus 1222 ~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~ALvkL~ 1301 (2102)
T PLN03200 1222 PELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLS 1301 (2102)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888888888999999999999999999999999999999
Q ss_pred cCChhhHHHH--HHcCcHHHHHHHhccC-ChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHH
Q 000184 1439 KDRPSCKLEM--VKAGVIESVLDILHEA-PDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSA 1515 (1890)
Q Consensus 1439 ~~~~~~~~~l--~~~~~i~~L~~lL~~~-~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~a 1515 (1890)
.+++..+..+ +|.++++.++++|.+. +.+++..++++|+.|+++.+++...++.|++++|+.+|.+ +
T Consensus 1302 kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~d-e--------- 1371 (2102)
T PLN03200 1302 SGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVS-E--------- 1371 (2102)
T ss_pred cCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhc-c---------
Confidence 9987777777 8999999999999887 4678888999998887777777777777777777777775 2
Q ss_pred HHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHH
Q 000184 1516 LQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHIL 1595 (1890)
Q Consensus 1516 l~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v 1595 (1890)
...+++.|+.+|.+|...+++++.+.+++++.|++..+-..++..
T Consensus 1372 -----------------------------------~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a 1416 (2102)
T PLN03200 1372 -----------------------------------SSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVL 1416 (2102)
T ss_pred -----------------------------------CchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHH
Confidence 223578899999999999999999999999988888887889999
Q ss_pred HHHHHHHHHHHhccChhH---HHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhh-----hcccchHHHHH
Q 000184 1596 QQRAVKALVSIALTWPNE---IAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEF-----YLEVPVAVLVR 1667 (1890)
Q Consensus 1596 ~~~A~~aL~~l~~~~~~~---l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~-----~~~~~v~~Lv~ 1667 (1890)
.+.|+++|.+++.+|++. +.+.|+++.++.+++.- ...+++.|.-++.-+. ++..+ +.+...|.|+.
T Consensus 1417 ~E~AV~aL~kl~~~~~~v~~Emv~~G~~~kllllLQ~c----~~~lkekAaeLLrlL~-~~~~~~~~~~~~~~~~~~~~~ 1491 (2102)
T PLN03200 1417 HEAAISALIKLGKDRPPCKLDMVKAGIIERVLDILPEA----PDSLCSAIAELLRILT-NNSSIAKGQSAAKVVEPLFLL 1491 (2102)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHhCHHHHHHHHHHcC----CHHHHHHHHHHHHHhc-cchhhccccchhhhhHHHHHH
Confidence 999999999999988884 77899999999999972 3466665555543333 33333 44456777888
Q ss_pred hhccC-ChhHHHHHHHHHH-HhhcCChhhHHHHHHcccHHHHHHHHccC--CcHHHHHHHHHHHhhchhhhhhhhccccc
Q 000184 1668 LLRSG-SEGTVIGSLNALL-VLESDDGTSAEAMAESGAIEALLELLRSH--QCEETAARLLEVLLNNGKIRESKATKSAI 1743 (1890)
Q Consensus 1668 ll~~~-~~~v~~~a~~aL~-~L~~~~~~~~~~i~~~g~i~~Li~lL~~~--~~~~~a~~al~~L~~~~~~r~~i~~~~~i 1743 (1890)
+++++ ....|..|..+|. .+++++......|...|+|+||+.+|+|+ .++|.++++++.|.+++++|++++++++|
T Consensus 1492 l~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI 1571 (2102)
T PLN03200 1492 LTRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAV 1571 (2102)
T ss_pred HhccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccch
Confidence 87765 2233455666666 78889999999999999999999999996 69999999999999999999999999999
Q ss_pred cccccccCChHHHHHHHHHHHHHhcchhhhhh-----hhhhcc--------------------------ccc------ch
Q 000184 1744 LPLSQYLLDPQTQAQQARLLATLALGDLFQNE-----GLARSA--------------------------DAV------SA 1786 (1890)
Q Consensus 1744 ~~L~~~~~~~~~~~~~~~~la~l~~~~~~~~~-----~l~~~~--------------------------~~~------~~ 1786 (1890)
.||+++++++....|..++.|+...+..|++. |+.+.+ +.. -.
T Consensus 1572 ~pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~ 1651 (2102)
T PLN03200 1572 VPLVRLAGIGILSLQQRAVKALESISLSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVP 1651 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHhhcccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEee
Confidence 99999999888888888899999999999887 221111 000 14
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHHHHhCCCCCCchHHHHHHHHHHhccchhhHh
Q 000184 1787 CRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEY 1864 (1890)
Q Consensus 1787 ~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 1864 (1890)
+..||+++++. ++.++..|+.+|..+...|+..++.|.+.|+|+.|+++++||+|++. ++++|+.|+||+++||.
T Consensus 1652 ~~~lvkl~~s~-~e~~~~~a~~~l~~~~~~d~~~~~~~~~~g~i~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 1726 (2102)
T PLN03200 1652 VAVLVKLLRST-SESTVVVALNALLVLERDDSSSAEQMAESGAIEALLELLRSHQCEEA--AARLLEALFNNVKVREM 1726 (2102)
T ss_pred HHHHHHHHhcc-chhHHHHHHHHHHHHHhcchhHHHHHHHhhhHHHHHHHHHhccchhH--HHHHHHHHhcCcchhhh
Confidence 78899999996 99999999999999999999999999999999999999999999998 99999999999999975
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-40 Score=357.64 Aligned_cols=417 Identities=19% Similarity=0.211 Sum_probs=371.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH-hhccCchhhHHHHhcCcHHHHHHhh-CCCCHHHHHHHHHHHHHcccCChhcHHH
Q 000184 413 KRLLVGLITMATNEVQEELVRALLK-LCNNEGSLWRALQGREGIQLLISLL-GLSSEQQQECSVALLCLLSNENDDSKWA 490 (1890)
Q Consensus 413 i~~Lv~lL~~~~~~v~~~a~~aL~~-L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 490 (1890)
+|.|..-+.+.|-+.+..++.-++. |+..+....+.++++|.+|.+++++ .....-.+.+|+|+|.|++++.....+.
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 4677777778888888888888887 4555556778899999999999999 5567778999999999999988888889
Q ss_pred HHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCCh--hHHHHHHHHHHHHhcCC
Q 000184 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA--NGKEIAAKTLNHLIHKS 568 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~--~~~~~Aa~aL~~L~~~~ 568 (1890)
++++|++|.++++|.+++.+++++++|+|+|++.+++.+|+.+++.|++.+++.++.+... .+.+++.|+|.|||+..
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999999999999999999999998765 78899999999999976
Q ss_pred CCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCh
Q 000184 569 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK 648 (1890)
Q Consensus 569 ~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~ 648 (1890)
.| .|+- .. + ..++|.|.+|+.+.++++.-.|+|++.+|+.+..
T Consensus 233 nP-------------~P~w-----------------~~-i------sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~ 275 (526)
T COG5064 233 NP-------------PPDW-----------------SN-I------SQALPILAKLIYSRDPEVLVDACWAISYLSDGPN 275 (526)
T ss_pred CC-------------CCch-----------------HH-H------HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH
Confidence 54 1110 00 1 2359999999999999999999999999999998
Q ss_pred hHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000184 649 DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 728 (1890)
Q Consensus 649 ~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL 728 (1890)
+..+++...|..+.|+++|.+++..++..+++.++|+..+. +.++..++.+|+++.+..+|.++.+.+|+++||++.|+
T Consensus 276 E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~-D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 276 EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS-DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC-ccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 88899999999999999999999999999999999999886 46777799999999999999999999999999999999
Q ss_pred hcCchHHHHH-HhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHH
Q 000184 729 ILDSEVSEKA-IAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 807 (1890)
Q Consensus 729 ~~~~~~~~~~-~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~ 807 (1890)
..+...+.++ ++.+.+|+|++++.+.+-.++++|+||+.|...++-....+..|+..+|++++|+++|...+.++. +.
T Consensus 355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkii-ev 433 (526)
T COG5064 355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII-EV 433 (526)
T ss_pred ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccch-hh
Confidence 9776555554 599999999999999999999999999999998777766778889999999999999999999999 99
Q ss_pred HHHHHHHHHhcCCCC--CCCC--CccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCC
Q 000184 808 ALDALAILSRSGGAS--GHVK--PAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQ 868 (1890)
Q Consensus 808 al~~L~~l~~~~~~~--~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 868 (1890)
+++++.|+++.++.. .+.+ +.++..++.+++++.|..|+...|..++++|..|++.||+++
T Consensus 434 ~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 434 ALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred hHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 999999999988742 2333 357899999999999999999999999999999999999876
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-38 Score=378.52 Aligned_cols=415 Identities=20% Similarity=0.225 Sum_probs=368.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhhHHHHhcCcHHHHHHhhC-CCCHHHHHHHHHHHHHcccCChhcHHH
Q 000184 413 KRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWA 490 (1890)
Q Consensus 413 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~ 490 (1890)
.+.++..+.+.++..+..+..+++.+-+... .....++..|.+|.+|++|. ..++.+|.+|+|+|.|+++++.+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5667788888999999999999998765433 34556667799999999997 556999999999999999999999999
Q ss_pred HHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCCh-hHHHHHHHHHHHHhcCCC
Q 000184 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~-~~~~~Aa~aL~~L~~~~~ 569 (1890)
++++|++|.|+.++.+++..++++|+|+|+|++.+++.+|+.+.+.|++++|+.++...++ ...+.++|+|.|||++.+
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999998776 789999999999999876
Q ss_pred CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChh
Q 000184 570 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 649 (1890)
Q Consensus 570 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~ 649 (1890)
|. |.. + .-...+|.|..++++.|+++...|||+|++|+.+.++
T Consensus 228 P~-------------P~~------------------~------~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 228 PS-------------PPF------------------D------VVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred CC-------------CcH------------------H------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 41 110 0 0123599999999999999999999999999999999
Q ss_pred HHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 000184 650 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-SPVLEVAEQATCALANL 728 (1890)
Q Consensus 650 ~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~-~~~~ev~~~aa~aL~nL 728 (1890)
..+.++..|++|.|+.+|.+.+..++..|+++++|++.+. +.++..++..|+++.|..++. ++.+.++++|+|+++||
T Consensus 271 ~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~-d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 271 KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS-DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc-HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998885 577777999999999999999 55566999999999999
Q ss_pred hcCchH-HHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHH
Q 000184 729 ILDSEV-SEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 807 (1890)
Q Consensus 729 ~~~~~~-~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~ 807 (1890)
..+... ...+++.++++.|+++++.++.++|++|+||+.|+..++. .....|+.++|++++++++|...|.++. ..
T Consensus 350 tAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii-~v 426 (514)
T KOG0166|consen 350 TAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKII-LV 426 (514)
T ss_pred hcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHH-HH
Confidence 976654 5555699999999999999999999999999999998766 3446778999999999999999998887 99
Q ss_pred HHHHHHHHHhcCCCCCC-CCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCC
Q 000184 808 ALDALAILSRSGGASGH-VKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQ 868 (1890)
Q Consensus 808 al~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 868 (1890)
++++|.|+++..+.... ..+++...++.+++++++..++.+.|..++++|.+++++||+++
T Consensus 427 ~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 99999999998875221 12788999999999999999999999999999999999999875
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.5e-31 Score=286.35 Aligned_cols=441 Identities=21% Similarity=0.239 Sum_probs=366.7
Q ss_pred cCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHH
Q 000184 195 AGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 274 (1890)
Q Consensus 195 ~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~ 274 (1890)
++-+..+.-+-.+++.+.+..++-..+...... .. -+......+..-++.+. +..++..+..++.|++. +.+++
T Consensus 46 ~~plraltvL~ySDnlnlqrsaalafAeitek~---vr-~Vsres~epvl~llqs~-d~~Iq~aa~~alGnlAV-n~enk 119 (550)
T KOG4224|consen 46 ASPLRALTVLKYSDNLNLQRSAALAFAEITEKG---VR-RVSRESNEPVLALLQSC-DKCIQCAAGEALGNLAV-NMENK 119 (550)
T ss_pred CCccchheeeeeccccccchHHHHHHHHHHHHH---HH-HhhhhhhhHHHHHHhCc-chhhhhhhhhhhcccee-ccCCc
Confidence 344666666666777777776666655443211 11 13345566777777775 67899999999999999 67889
Q ss_pred HHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHH
Q 000184 275 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 354 (1890)
Q Consensus 275 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 354 (1890)
..|++.+|++.|+.-+.++. .++|.++++++.|+.
T Consensus 120 ~liv~l~Gl~~Li~qmmtd~---------vevqcnaVgCitnLa------------------------------------ 154 (550)
T KOG4224|consen 120 GLIVSLLGLDLLILQMMTDG---------VEVQCNAVGCITNLA------------------------------------ 154 (550)
T ss_pred eEEEeccChHHHHHHhcCCC---------cEEEeeehhhhhhhh------------------------------------
Confidence 99999999999988776653 445566666666644
Q ss_pred hcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHH
Q 000184 355 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRA 434 (1890)
Q Consensus 355 ~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~a 434 (1890)
...+++.++...|++.++..+-++.+..+|.+++.+
T Consensus 155 --------------------------------------------T~d~nk~kiA~sGaL~pltrLakskdirvqrnatga 190 (550)
T KOG4224|consen 155 --------------------------------------------TFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGA 190 (550)
T ss_pred --------------------------------------------ccccchhhhhhccchhhhHhhcccchhhHHHHHHHH
Confidence 344566788889999999998889999999999999
Q ss_pred HHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcC--CcHHHHHhccCCCHHHH
Q 000184 435 LLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAG--GIPPLVQILESGSAKAK 512 (1890)
Q Consensus 435 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~ 512 (1890)
|.|+... .++++.++.+|++|.||.++++++.++|++++.+++|++- +...|+.+++.+ .|+.|++++.+++++++
T Consensus 191 LlnmThs-~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvk 268 (550)
T KOG4224|consen 191 LLNMTHS-RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVK 268 (550)
T ss_pred HHHhhhh-hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHH
Confidence 9999987 5678889999999999999999999999999999999994 788899999988 99999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHH
Q 000184 513 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 592 (1890)
Q Consensus 513 e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 592 (1890)
-.|..+|+||+.+ .+++..|++.|++|.++++++++.-...-....++.|++.|+-..
T Consensus 269 cqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe--------------------- 326 (550)
T KOG4224|consen 269 CQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE--------------------- 326 (550)
T ss_pred HHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc---------------------
Confidence 9999999999985 788899999999999999998876666666677777887654321
Q ss_pred HHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCC
Q 000184 593 DALKSMLSVVSFSDILREGSAANDAVETMIKILSST-KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 671 (1890)
Q Consensus 593 ~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~-~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 671 (1890)
..+.+.|.+.+|+.+|+-+ +++.|.+|..+|++|+.++...+..+...|+||.|..++.++.
T Consensus 327 -----------------~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p 389 (550)
T KOG4224|consen 327 -----------------VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP 389 (550)
T ss_pred -----------------cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC
Confidence 1355677899999999876 5669999999999999988888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHH------hcCcHH
Q 000184 672 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAI------AEEIIL 745 (1890)
Q Consensus 672 ~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~------~~~~v~ 745 (1890)
..++..-..|+..++... ..+..+.+.|.++.|+.++.+.++|++.+|+.||.|+..+.+....++ ..++-.
T Consensus 390 vsvqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g 467 (550)
T KOG4224|consen 390 VSVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQG 467 (550)
T ss_pred hhHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHH
Confidence 999999888888887653 667779999999999999999999999999999999998777655554 357777
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHhhcC
Q 000184 746 PATRVLCEGTISGKTLAAAAIARLLHSR 773 (1890)
Q Consensus 746 ~L~~ll~~~~~~~~~~aa~aL~~L~~~~ 773 (1890)
.|.+++.++....+.-+.|.+.+|+.+.
T Consensus 468 ~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 468 RLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 8999999999889999999999999653
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-30 Score=283.51 Aligned_cols=442 Identities=19% Similarity=0.209 Sum_probs=357.8
Q ss_pred cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccC
Q 000184 105 GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTS 184 (1890)
Q Consensus 105 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~ 184 (1890)
++-+..+.-+--+++.+.+..++-+...+...+. . -+......++.-++++ .++.++..+..+++|++..
T Consensus 46 ~~plraltvL~ySDnlnlqrsaalafAeitek~v------r-~Vsres~epvl~llqs---~d~~Iq~aa~~alGnlAVn 115 (550)
T KOG4224|consen 46 ASPLRALTVLKYSDNLNLQRSAALAFAEITEKGV------R-RVSRESNEPVLALLQS---CDKCIQCAAGEALGNLAVN 115 (550)
T ss_pred CCccchheeeeeccccccchHHHHHHHHHHHHHH------H-HhhhhhhhHHHHHHhC---cchhhhhhhhhhhccceec
Confidence 3334444444445666666666666555554111 1 1222234455555554 5777999999999999965
Q ss_pred ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHH
Q 000184 185 TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALK 264 (1890)
Q Consensus 185 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~ 264 (1890)
. +++..|++.+|++.|+.-+.+++.++|.++.+|+++|+..++ ++.++...|++.++.++-++ .|..+++.+.++|.
T Consensus 116 ~-enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~-nk~kiA~sGaL~pltrLaks-kdirvqrnatgaLl 192 (550)
T KOG4224|consen 116 M-ENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDS-NKVKIARSGALEPLTRLAKS-KDIRVQRNATGALL 192 (550)
T ss_pred c-CCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcccc-chhhhhhccchhhhHhhccc-chhhHHHHHHHHHH
Confidence 5 555668899999999999999999999999999999997755 89999999999999996555 57789999999999
Q ss_pred HhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhh
Q 000184 265 SLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADT 344 (1890)
Q Consensus 265 ~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~ 344 (1890)
|++. ..++|+.++.+||+|.|+.++.+++ ..+|++|+.++.|+.-+
T Consensus 193 nmTh-s~EnRr~LV~aG~lpvLVsll~s~d---------~dvqyycttaisnIaVd------------------------ 238 (550)
T KOG4224|consen 193 NMTH-SRENRRVLVHAGGLPVLVSLLKSGD---------LDVQYYCTTAISNIAVD------------------------ 238 (550)
T ss_pred Hhhh-hhhhhhhhhccCCchhhhhhhccCC---------hhHHHHHHHHhhhhhhh------------------------
Confidence 9998 7899999999999999999998864 78899999998886531
Q ss_pred HhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcC--cHHHHHHHhcC
Q 000184 345 LGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE--AKRLLVGLITM 422 (1890)
Q Consensus 345 ~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g--~i~~Lv~lL~~ 422 (1890)
...++.+.+.+ .+|.|+.++.+
T Consensus 239 --------------------------------------------------------~~~Rk~Laqaep~lv~~Lv~Lmd~ 262 (550)
T KOG4224|consen 239 --------------------------------------------------------RRARKILAQAEPKLVPALVDLMDD 262 (550)
T ss_pred --------------------------------------------------------HHHHHHHHhcccchHHHHHHHHhC
Confidence 11233444445 78999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHH
Q 000184 423 ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQ 502 (1890)
Q Consensus 423 ~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~ 502 (1890)
++++++..|..+|+|++.+ ..+...|.++|++|.++++++++.-....+.+.+++|++- ++-+--.|+++|.+.||+.
T Consensus 263 ~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi-hplNe~lI~dagfl~pLVr 340 (550)
T KOG4224|consen 263 GSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI-HPLNEVLIADAGFLRPLVR 340 (550)
T ss_pred CChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc-ccCcccceecccchhHHHH
Confidence 9999999999999999998 5788899999999999999999988888889999999995 7888889999999999999
Q ss_pred hccCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHh
Q 000184 503 ILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLT 581 (1890)
Q Consensus 503 lL~~~-~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~ 581 (1890)
+|.-+ ++++|-+|..+|+||+..++.++..|.+.|+||.|..++.++...++.....++..|+...+.
T Consensus 341 lL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~----------- 409 (550)
T KOG4224|consen 341 LLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND----------- 409 (550)
T ss_pred HHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc-----------
Confidence 99987 566999999999999997888999999999999999999999999999988888888764332
Q ss_pred cCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHH-----H
Q 000184 582 SDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI-----A 656 (1890)
Q Consensus 582 ~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~-----~ 656 (1890)
+...-+.|.+|.|+.+..+.+++++-+|+.+|.|++.+.+++...+. .
T Consensus 410 ---------------------------k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~ 462 (550)
T KOG4224|consen 410 ---------------------------KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV 462 (550)
T ss_pred ---------------------------HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc
Confidence 22334567799999999999999999999999999998665543221 1
Q ss_pred cCchHHHHHhhcCCCHHHHHHHHHHHHHHHccC
Q 000184 657 VKTLWSVMKLLDVGSECILVEASRCLAAIFLSV 689 (1890)
Q Consensus 657 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 689 (1890)
.|+=..|++.+.++...+..-+.+++..+...+
T Consensus 463 ~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 463 QGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 345567788888888778888888888886543
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.4e-27 Score=284.41 Aligned_cols=409 Identities=17% Similarity=0.209 Sum_probs=335.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCc-hhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHH
Q 000184 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARRE 276 (1890)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~ 276 (1890)
.+.++..+.++++..+..+...++.+.+... .....++..|.+|.||+.|....++.++..|+|+|.|++++..+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 6788888899999989888888888764332 356677778999999999987767889999999999999999999999
Q ss_pred HHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhc
Q 000184 277 IAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 356 (1890)
Q Consensus 277 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~ 356 (1890)
++++|++|.++.++.+++ ..++|.|++||+|++++
T Consensus 148 vv~agavp~fi~Ll~s~~---------~~v~eQavWALgNIagd------------------------------------ 182 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPS---------ADVREQAVWALGNIAGD------------------------------------ 182 (514)
T ss_pred cccCCchHHHHHHhcCCc---------HHHHHHHHHHHhccccC------------------------------------
Confidence 999999999999999986 78889999999888763
Q ss_pred ccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCH-HHHHHHHHHH
Q 000184 357 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATN-EVQEELVRAL 435 (1890)
Q Consensus 357 ~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL 435 (1890)
.+..|..+...|++++|+.++...+. .....++|+|
T Consensus 183 -------------------------------------------s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 183 -------------------------------------------SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTL 219 (514)
T ss_pred -------------------------------------------ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHH
Confidence 23344566677999999999987665 7888999999
Q ss_pred HHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHH
Q 000184 436 LKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDS 515 (1890)
Q Consensus 436 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a 515 (1890)
.|||.+....-..-.-...+|.|..++.+.|+++...|+|+|+.|+.+..+..+.+++.|.++.|+.+|...+..++.-|
T Consensus 220 sNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~Pa 299 (514)
T KOG0166|consen 220 SNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPA 299 (514)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHH
Confidence 99999863221111223678999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHH
Q 000184 516 ASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL 595 (1890)
Q Consensus 516 ~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL 595 (1890)
..+++|+...++.-.+.+...|++|.|..++..
T Consensus 300 LRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~----------------------------------------------- 332 (514)
T KOG0166|consen 300 LRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS----------------------------------------------- 332 (514)
T ss_pred HhhccceeeccHHHHHHHHhcChHHHHHHHhcc-----------------------------------------------
Confidence 999999998766555555555555554444432
Q ss_pred HHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHH
Q 000184 596 KSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECIL 675 (1890)
Q Consensus 596 ~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~ 675 (1890)
+..+.++..|||++.|++.++.+..++++.+|.+|.|+.++..++.+++
T Consensus 333 -------------------------------s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~r 381 (514)
T KOG0166|consen 333 -------------------------------SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIR 381 (514)
T ss_pred -------------------------------CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHH
Confidence 3344468899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc-----C----chHHHHHHhcCcHHH
Q 000184 676 VEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL-----D----SEVSEKAIAEEIILP 746 (1890)
Q Consensus 676 ~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~-----~----~~~~~~~~~~~~v~~ 746 (1890)
++|++++.|++++....+-.-+++.|.+++|+.+|...+..+...+..+|.||+. . ......+-+.+++..
T Consensus 382 KEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 382 KEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 9999999999988776666669999999999999999999999999999999972 1 233344447788877
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhc
Q 000184 747 ATRVLCEGTISGKTLAAAAIARLLHS 772 (1890)
Q Consensus 747 L~~ll~~~~~~~~~~aa~aL~~L~~~ 772 (1890)
+-.+-.+.+.++-..|...+.+.+..
T Consensus 462 iE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 462 IENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCC
Confidence 65554444446777777777666543
No 8
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.96 E-value=3.1e-24 Score=260.08 Aligned_cols=1014 Identities=17% Similarity=0.153 Sum_probs=621.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhc
Q 000184 415 LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA 494 (1890)
Q Consensus 415 ~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~ 494 (1890)
.|++-+.++|.+.|.+|+.-|.+--....-.-+.--+...+..++++|.+.+.++|..|+.+|+-|++..++.+-.-
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~--- 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET--- 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH---
Confidence 56778889999999999998876332211000011123568999999999999999999999999986433332111
Q ss_pred CCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHH
Q 000184 495 GGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATIS 574 (1890)
Q Consensus 495 g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~ 574 (1890)
.+..|..-+-++.++.|.-+.-.|...-..-+..........+.+.+...+.++. +..
T Consensus 86 -~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i--------------~~q------- 143 (1233)
T KOG1824|consen 86 -IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAI--------------SKQ------- 143 (1233)
T ss_pred -HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHh--------------hhc-------
Confidence 3444444444555555554444444333221111111122233344444333211 000
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHhhhc-C-chHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHH
Q 000184 575 QLTALLTSDLPESKVYVLDALKSMLSVV-S-FSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRE 652 (1890)
Q Consensus 575 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~-~-~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~ 652 (1890)
.+...++..+.+.++.+.... . .++ .+.. .+..++.-+.+....+|..|+.+|+.++...+.
T Consensus 144 -------e~~sai~~e~lDil~d~lsr~g~ll~~-fh~~-----il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--- 207 (1233)
T KOG1824|consen 144 -------EDVSAIKCEVLDILADVLSRFGTLLPN-FHLS-----ILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--- 207 (1233)
T ss_pred -------ccchhhHHHHHHHHHHHHHhhcccCcc-hHHH-----HHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH---
Confidence 111223333444444333211 1 111 2222 256666667788889999999999999986543
Q ss_pred HHHHcCchHHHHHhhcC-CCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHh---CCCCHHHHHHHHHHHHHH
Q 000184 653 SSIAVKTLWSVMKLLDV-GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA---GSPVLEVAEQATCALANL 728 (1890)
Q Consensus 653 ~~~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll---~~~~~ev~~~aa~aL~nL 728 (1890)
..-.+.+..|++-|.. .+....+.-..+|+.+++.. ..|..-.-...++.+.+.. ...++|.|+.+..++..+
T Consensus 208 -~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~a--g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 208 -DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQA--GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred -HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHh--cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 2334677888888743 44556666777888887654 2333334466788888888 778899999999999999
Q ss_pred hcCchHHHHHHhcCcHHHHHHHHhcCCc----------------------------------chHHHHHHHHHHHhhcCc
Q 000184 729 ILDSEVSEKAIAEEIILPATRVLCEGTI----------------------------------SGKTLAAAAIARLLHSRK 774 (1890)
Q Consensus 729 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~----------------------------------~~~~~aa~aL~~L~~~~~ 774 (1890)
+.+.+........+++..++.++.++++ .+|+.|++++..+..++.
T Consensus 285 l~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~ 364 (1233)
T KOG1824|consen 285 LRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL 364 (1233)
T ss_pred HHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH
Confidence 8776666666667777888888766432 489999999999987655
Q ss_pred cchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCC--CCCC--------Cc---cceeecCCCChhh
Q 000184 775 IDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGAS--GHVK--------PA---WQVLAEFPKSITP 841 (1890)
Q Consensus 775 ~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~--~~~~--------~~---~~~~~~~~~~l~~ 841 (1890)
.- +.. .++..-+.+|+.++.+.+.|. .+.+.++..++++.+.. .+.+ ++ |.+.-.++..+..
T Consensus 365 E~--L~~--~~q~l~p~lI~RfkEREEnVk-~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVka 439 (1233)
T KOG1824|consen 365 EM--LPD--FYQTLGPALISRFKEREENVK-ADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKA 439 (1233)
T ss_pred HH--HHH--HHHHhCHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHH
Confidence 31 222 345677889999999988888 99999999999988631 0111 11 3333333334444
Q ss_pred HHhHhhcCChhHHHHHHHHHHHHhcCCccchhhhhccCccchHHHHHHHhhcCCCceeecchhHHHHHhhhchhhHHHhh
Q 000184 842 IVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDL 921 (1890)
Q Consensus 842 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~g~~i~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~a~~~~~~~~~~~ 921 (1890)
|-+.+.++....+..++..|..+ . ..+
T Consensus 440 i~~qlr~ks~kt~~~cf~lL~el---------------------------------------------i--------~~l 466 (1233)
T KOG1824|consen 440 IQKQLREKSVKTRQGCFLLLTEL---------------------------------------------I--------NVL 466 (1233)
T ss_pred HHHHHhhccccchhhHHHHHHHH---------------------------------------------H--------HhC
Confidence 44444443333333333333333 2 222
Q ss_pred hc--cccchhhHHHHHHHHHhhcCCCCcCCCCChhHHHHHhhhhhhcccCCCCCCCCcccc---cCchhHHHHHHHHhcc
Q 000184 922 NH--SNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVI---FGENLAIWLLCVLACH 996 (1890)
Q Consensus 922 ~~--~~~~~~~i~~Lv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 996 (1890)
++ ..+-.-.++..+..|.... +.+...+++|.++-. ....++|.+| ++...++.+.|+.+.|
T Consensus 467 p~~l~~~~~slvpgI~~~l~DkS-----sss~~ki~~L~fl~~--------~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 467 PGALAQHIPSLVPGIIYSLNDKS-----SSSNLKIDALVFLYS--------ALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred cchhhhcccccchhhhhhcCCcc-----chHHHHHHHHHHHHH--------HHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 22 2333445677777777555 445678889998886 5666777777 7888999999999999
Q ss_pred CCccchhhhhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHH------hcchhh-----------------hh
Q 000184 997 DEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAIL------FQDRDI-----------------IR 1053 (1890)
Q Consensus 997 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~------~~d~~v-----------------~~ 1053 (1890)
+ |+. +-|+-+.-+..+.- -+ .|+-..-+.+.++..+|-.++ .+|+|| ..
T Consensus 534 y---Kis---aEAL~v~~~lvkvi-rp-l~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l 605 (1233)
T KOG1824|consen 534 Y---KIS---AEALLVCQQLVKVI-RP-LQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFL 605 (1233)
T ss_pred H---hhh---HHHHHHHHHHHHHh-cc-cCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 9 222 23333333222211 11 122222455667777777777 788888 44
Q ss_pred hhhhhchHHHHHHhhcchhHHhHHhHHHHHHHHHhcCCCcchhhhccccchhhhHHhhcccccchhhHHhhhHhhhhccC
Q 000184 1054 AHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRY 1133 (1890)
Q Consensus 1054 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1890)
..+...+.|+|...++++ ++|--|+.++.-..-.+..-....+ ...++..+.++.+++.+.+
T Consensus 606 ~~eL~~~L~il~eRl~nE--iTRl~AvkAlt~Ia~S~l~i~l~~~----l~~il~~l~~flrK~~r~l------------ 667 (1233)
T KOG1824|consen 606 GNELPRTLPILLERLGNE--ITRLTAVKALTLIAMSPLDIDLSPV----LTEILPELASFLRKNQRAL------------ 667 (1233)
T ss_pred hhhhHHHHHHHHHHHhch--hHHHHHHHHHHHHHhccceeehhhh----HHHHHHHHHHHHHHHHHHH------------
Confidence 556678899999888887 6666666665543322222111100 1156678889999999887
Q ss_pred CcHHHHHhhhhhcccccCccccccHHHHHHhcCCC--CCCCCchHHHHHHHHHHhhcCccchhHHHhcCcHHHHHHHHhc
Q 000184 1134 PDQVALERLFRVEDIRVGATSRKAIPALVDLLKPI--PDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSL 1211 (1890)
Q Consensus 1134 ~~~~~~~~l~~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~~A~~~L~~la~~~~~~r~~i~eag~l~~Lv~~L~~ 1211 (1890)
.+..+..+......+.+...+..++.++..+.+- ....+....|+..|+.++...+..- .-...-.++.++.+|++
T Consensus 668 -r~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l-~~~~~~iL~~ii~ll~S 745 (1233)
T KOG1824|consen 668 -RLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSL-LKISNPILDEIIRLLRS 745 (1233)
T ss_pred -HHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHH-HHHhhhhHHHHHHHhhC
Confidence 6666777777777778888888888877777543 1122234567778888887666433 22334578889999888
Q ss_pred CCcchhHHHHHHHHHHhh-----cCHHH------------------------------------HHhhh--hcCcHHHHH
Q 000184 1212 GPQDATEEAATDLLGILF-----SSAEI------------------------------------RRHES--AFAAVSQLV 1248 (1890)
Q Consensus 1212 ~~~~~q~~a~~~ll~~l~-----~~~~~------------------------------------~~~~~--~~g~i~~Lv 1248 (1890)
+- .|..+..+++..+. .+++. ....- .......|+
T Consensus 746 pl--lqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~ 823 (1233)
T KOG1824|consen 746 PL--LQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLI 823 (1233)
T ss_pred cc--ccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHH
Confidence 52 35555444333211 11100 00000 111122233
Q ss_pred HHHhc--CChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchh--hHHHHhh
Q 000184 1249 AVLRL--GGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSR--ALAVADV 1324 (1890)
Q Consensus 1249 ~lL~~--~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~--~~~~~~v 1324 (1890)
.=+.+ .+...|.+|.-.||.+.. .++.....+--..+++.|++++++++.+|..|||+++.++-+. +.+..++
T Consensus 824 ~~~~s~~s~~~ikvfa~LslGElgr---~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi 900 (1233)
T KOG1824|consen 824 QDLQSPKSSDSIKVFALLSLGELGR---RKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQI 900 (1233)
T ss_pred HHHhCCCCchhHHHHHHhhhhhhcc---CCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHH
Confidence 32332 245677788666665543 3333344455568899999999999999999999999977433 4555444
Q ss_pred hCC------hHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHH----HHH-----------hhCchHHHHHHHccCCh
Q 000184 1325 EMN------AVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRS----TVA-----------AARCVEPLVSLLVTEFS 1383 (1890)
Q Consensus 1325 ~~g------~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~----~~~-----------~~~~i~~Lv~lL~~~~~ 1383 (1890)
+.. .++.|.+++.+.+.+..+..+..+|..||.+.++.. ... ...-+|+|-..++++.+
T Consensus 901 ~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~ 980 (1233)
T KOG1824|consen 901 ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEAS 980 (1233)
T ss_pred hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCc
Confidence 443 467788888876666778888999999987754331 111 12345777788889999
Q ss_pred HHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhc
Q 000184 1384 PAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILH 1462 (1890)
Q Consensus 1384 ~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~ 1462 (1890)
..|..++.|..... +++...+.. ....+.....++++++.+|||.|+.++...+.++|..... .+|-|+..|-
T Consensus 981 ~~rs~vvsavKfsisd~p~~id~~-lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrD-----llpeLLp~Ly 1054 (1233)
T KOG1824|consen 981 NTRSSVVSAVKFSISDQPQPIDPL-LKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRD-----LLPELLPLLY 1054 (1233)
T ss_pred chhhhhhheeeeeecCCCCccCHH-HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHHHH
Confidence 99999988887666 555555544 4556889999999999999999999999999998776544 5566666665
Q ss_pred cCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhh
Q 000184 1463 EAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEP 1542 (1890)
Q Consensus 1463 ~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~ 1542 (1890)
+++. ++ .++++. .. +-|+-... |.|-+.|+.|-++++.+++....+.. ....+..
T Consensus 1055 ~eTk-vr---kelIre-Ve-------------MGPFKH~V---DdgLd~RKaaFEcmytLLdscld~~d----it~Fl~~ 1109 (1233)
T KOG1824|consen 1055 SETK-VR---KELIRE-VE-------------MGPFKHTV---DDGLDLRKAAFECMYTLLDSCLDRLD----ITEFLNH 1109 (1233)
T ss_pred Hhhh-hh---Hhhhhh-hc-------------ccCccccc---cchHHHHHHHHHHHHHHHHhhhhhcc----HHHHHHH
Confidence 5432 11 122211 00 22222222 35788999999999999766544332 2233444
Q ss_pred hhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhc------------CCCHHHHHHHHHHHHHHhc
Q 000184 1543 LIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLG------------SGIHILQQRAVKALVSIAL 1608 (1890)
Q Consensus 1543 Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~------------s~~~~v~~~A~~aL~~l~~ 1608 (1890)
+..=|++. -+++-...-.|.+++.---..-.-+-...++||.+.++ +...+.++.|++++..+..
T Consensus 1110 ~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1110 VEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLT 1186 (1233)
T ss_pred HHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhc
Confidence 55556655 55887777777777752111000011123455555442 2455788999999988843
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.95 E-value=7.8e-27 Score=253.30 Aligned_cols=420 Identities=18% Similarity=0.189 Sum_probs=329.7
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCCh
Q 000184 107 CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE 186 (1890)
Q Consensus 107 ~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~ 186 (1890)
-+|.|.+-|-++|.+.+..+..-++.+-+. .++......+..|++|.++++|... +....+..+.|+|.|++++..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~--E~~PPIq~VIdaGvVpRfvefm~~~--q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSK--ETSPPIQPVIDAGVVPRFVEFMDEI--QRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccCCCchhHHhccccHHHHHHHHhc--chhHHHHHHHHHHhhhccCcc
Confidence 468888889999999988888777765441 3444445689999999999999653 223366688999999999887
Q ss_pred hHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCC-CHhHHHHHHHHHHH
Q 000184 187 GFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGALKS 265 (1890)
Q Consensus 187 ~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~~Aa~aL~~ 265 (1890)
...+.++++|+||.++++|.+++.++++++.|+|+|++.+.+..+..+.+.|++.+++.++.+.. +....+.+.|+|.|
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 77777899999999999999999999999999999999888888889999999999999987643 36788999999999
Q ss_pred hhhcCHH--HHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhh
Q 000184 266 LSDHCKD--ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVAD 343 (1890)
Q Consensus 266 Ls~~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~ 343 (1890)
|+.+... .-..+ ..++|.|..++.+-+ +++
T Consensus 228 lcRGknP~P~w~~i--sqalpiL~KLiys~D---------~ev------------------------------------- 259 (526)
T COG5064 228 LCRGKNPPPDWSNI--SQALPILAKLIYSRD---------PEV------------------------------------- 259 (526)
T ss_pred hhCCCCCCCchHHH--HHHHHHHHHHHhhcC---------HHH-------------------------------------
Confidence 9975311 01111 113444444443321 333
Q ss_pred hHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCc-cchhhhhcCcHHHHHHHhcC
Q 000184 344 TLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPL-LSIKLENSEAKRLLVGLITM 422 (1890)
Q Consensus 344 ~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~~~l~~~g~i~~Lv~lL~~ 422 (1890)
-..|++++..|++.|. ....+.+.|..+.|+++|.+
T Consensus 260 -------------------------------------------lvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~ 296 (526)
T COG5064 260 -------------------------------------------LVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH 296 (526)
T ss_pred -------------------------------------------HHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC
Confidence 4445555555544433 23456678899999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHH
Q 000184 423 ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQ 502 (1890)
Q Consensus 423 ~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~ 502 (1890)
++..++.-+++...|+..+++...+.++..|+++.+..+|.++...++.+|||+++|++.++.+..+++++.+.+|+|+.
T Consensus 297 ~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ 376 (526)
T COG5064 297 ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence 99999999999999999988877888999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCHHHHHHHHHHHHHHhcCC---hHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 000184 503 ILESGSAKAKEDSASILRNLCNHS---EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTAL 579 (1890)
Q Consensus 503 lL~~~~~~~~e~a~~aL~~L~~~~---~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l 579 (1890)
+|.+.+-.++..|+|++.|.+.+. |+.-+.+++.|.|.+|..+|.-.+.++.+.+..++.|.....+. -++
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~------d~~ 450 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQ------DRL 450 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhH------HHH
Confidence 999999999999999999998742 55566778999999999999876666777777777666543221 000
Q ss_pred HhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Q 000184 580 LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 647 (1890)
Q Consensus 580 L~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~ 647 (1890)
.. ....+.....+.+.||+..+-.+-.+.+..+-..|-..+-..+...
T Consensus 451 ~~--------------------~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgee 498 (526)
T COG5064 451 RY--------------------GKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEE 498 (526)
T ss_pred hc--------------------cCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccc
Confidence 00 0111123445667899999999999999999999999888887653
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=4.2e-19 Score=225.29 Aligned_cols=526 Identities=16% Similarity=0.116 Sum_probs=377.7
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcC---CHHHHHHHHHHHHHhh
Q 000184 17 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG---SLAVKIQAATVLGSLC 93 (1890)
Q Consensus 17 ~~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~---~~~~~~~aa~~L~~L~ 93 (1890)
...+.+...+|.+.+. .++|..+...++.|++.+++....+.. ...+..|-..|+.. +-+.-.+...+...++
T Consensus 120 a~~~~~d~yiE~lYe~---~~ek~~~~~~il~La~~~~NL~~l~~n-e~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 120 ASINDLDEYIELLYED---IPEKIRGTSLILQLARNPENLEELVQN-ETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CCHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCcchHHHHHHh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3488999999999974 368999999999999999988886654 47788888888753 3355555566655555
Q ss_pred ccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHH--HHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHH
Q 000184 94 KENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKT--IYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVD 171 (1890)
Q Consensus 94 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~a--L~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~ 171 (1890)
.-.+-..-+.....-...++++. .|.+++-.+. +..............+-+-+ ....+-.+++. +..+.
T Consensus 196 ~f~~fH~~l~~~kiG~l~m~iie---~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~--~~kk~~~l~~k----QeqLl 266 (708)
T PF05804_consen 196 NFSQFHPILAHYKIGSLCMEIIE---HELKRHDLWQEELRKKKKAAEEKPEAKKDYEK--ELKKLQTLIRK----QEQLL 266 (708)
T ss_pred hHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhccchhhhhhHHH--HHHHHHHHHHH----HHHHH
Confidence 43344444444443344444443 2333322221 11100000000000010100 01222222222 22344
Q ss_pred HHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCC
Q 000184 172 NLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN 251 (1890)
Q Consensus 172 ~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 251 (1890)
..+...|.||+.+. .....|++.|+|+.|+++|.+++.++...+..+|.+|+...+ ++..+.+.|.++.|++++.+++
T Consensus 267 rv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 267 RVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcCCC
Confidence 46778899999665 455558999999999999999999999999999999987666 8999999999999999999864
Q ss_pred CHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhcc
Q 000184 252 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQS 331 (1890)
Q Consensus 252 ~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~ 331 (1890)
.+.+..+.++|.|||. +++.|..+++.|.+|.|+.++..++ .+..++..|.|+|.+.+.
T Consensus 345 -~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~-----------~~~val~iLy~LS~dd~~-------- 403 (708)
T PF05804_consen 345 -EDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN-----------FREVALKILYNLSMDDEA-------- 403 (708)
T ss_pred -HHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc-----------hHHHHHHHHHHhccCHhh--------
Confidence 6799999999999999 7899999999999999999997643 556799999999874321
Q ss_pred ccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcC
Q 000184 332 LESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE 411 (1890)
Q Consensus 332 ~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g 411 (1890)
+.. |..+..+|.+++++-.++...++..++..+.+|+.++.+...+.+.+
T Consensus 404 ------r~~------------------------f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~ 453 (708)
T PF05804_consen 404 ------RSM------------------------FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGN 453 (708)
T ss_pred ------HHH------------------------HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 111 11123456666665555444456677888889999999999999999
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCC-CHHHHHHHHHHHHHcccCChhcHH
Q 000184 412 AKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSKW 489 (1890)
Q Consensus 412 ~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~ 489 (1890)
+++.|+...- ..++ .....++|++.+.+..+..+. +.+..|+.++..+ +++...++.++|+||+..+.+...
T Consensus 454 gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ 527 (708)
T PF05804_consen 454 GLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQ 527 (708)
T ss_pred cHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHH
Confidence 9999987653 3333 245689999998756555554 5788888888764 778889999999999964334444
Q ss_pred HHHhcCCcHHHHHhccCC--CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcC--ChhHHHHHHHHHHHHh
Q 000184 490 AITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLI 565 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~~--~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~--~~~~~~~Aa~aL~~L~ 565 (1890)
.+.+.+.+|-|.++|..+ .+++.-.++..++.++. ++.+...+.+.|.++.|+++++.. +++..-....++.+|.
T Consensus 528 ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll 606 (708)
T PF05804_consen 528 LLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLL 606 (708)
T ss_pred HHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 555789999999999876 45788889999999998 588999999999999999999874 4566777777777777
Q ss_pred cCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 000184 566 HKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 645 (1890)
Q Consensus 566 ~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~ 645 (1890)
.|.+. ....+...+++..|+.++++.++++|+.|-.+|--++.
T Consensus 607 ~h~~t-------------------------------------r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 607 FHEET-------------------------------------REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred cChHH-------------------------------------HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 76432 11123445678889999999999999999999999988
Q ss_pred cChhHHH
Q 000184 646 TRKDLRE 652 (1890)
Q Consensus 646 ~~~~~~~ 652 (1890)
..++...
T Consensus 650 ~d~~w~~ 656 (708)
T PF05804_consen 650 YDEEWAE 656 (708)
T ss_pred hCHHHHH
Confidence 7665543
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=1.3e-18 Score=220.92 Aligned_cols=517 Identities=14% Similarity=0.132 Sum_probs=374.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccch-hhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCC
Q 000184 107 CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKI-FSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 185 (1890)
Q Consensus 107 ~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~-~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~ 185 (1890)
-+.-.+.+|-.+ ...+..++..+..|+. ++++- .. ...+-++..|.+.++.....+..+...+..++..++...
T Consensus 124 ~~d~yiE~lYe~-~~ek~~~~~~il~La~--~~~NL--~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~ 198 (708)
T PF05804_consen 124 DLDEYIELLYED-IPEKIRGTSLILQLAR--NPENL--EELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS 198 (708)
T ss_pred HHHHHHHHHhcc-cHHHHHHHHHHHHHhC--CcchH--HHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Confidence 355666777644 3446667788888888 34443 33 335556777888887755556667777777787777544
Q ss_pred hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHH--H---HHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHH
Q 000184 186 EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFL--L---ACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAA 260 (1890)
Q Consensus 186 ~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~--L---~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa 260 (1890)
.+...+.....=...++++.. +++.+-.|. + .......+..+..+ ....+.+-.+++.. ..+...+.
T Consensus 199 -~fH~~l~~~kiG~l~m~iie~---Elkr~~~w~~~l~~~~~~~~~~~~~~~~~--~~~~kk~~~l~~kQ--eqLlrv~~ 270 (708)
T PF05804_consen 199 -QFHPILAHYKIGSLCMEIIEH---ELKRHDLWQEELRKKKKAAEEKPEAKKDY--EKELKKLQTLIRKQ--EQLLRVAF 270 (708)
T ss_pred -HHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhccchhhhhhH--HHHHHHHHHHHHHH--HHHHHHHH
Confidence 355545554433444555543 333322221 1 11111111111111 11234555555553 35666788
Q ss_pred HHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhh
Q 000184 261 GALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQ 340 (1890)
Q Consensus 261 ~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~ 340 (1890)
..|.|++. ++.+...+++.|+++.|+.+|.+.+ .++.-.++..
T Consensus 271 ~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n---------~ellil~v~f--------------------------- 313 (708)
T PF05804_consen 271 YLLLNLAE-DPRVELKMVNKGIVSLLVKCLDREN---------EELLILAVTF--------------------------- 313 (708)
T ss_pred HHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCC---------HHHHHHHHHH---------------------------
Confidence 89999999 7889999999999999999997653 3344444444
Q ss_pred hhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHh
Q 000184 341 VADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI 420 (1890)
Q Consensus 341 ~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL 420 (1890)
|.+|+-..+++..+.+.|.++.|+.++
T Consensus 314 -----------------------------------------------------LkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 314 -----------------------------------------------------LKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred -----------------------------------------------------HHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 444555666777888999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHH
Q 000184 421 TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 500 (1890)
Q Consensus 421 ~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~L 500 (1890)
.+++.+.+..+++.|.||+.+ ++.+..+++.|.+|.|+.+|+++ ..+..+..+|.+|+. +++.+..+...+++|.+
T Consensus 341 ~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L 416 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQL 416 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHH
Confidence 999999999999999999998 57789999999999999999865 456779999999995 78899999999999999
Q ss_pred HHhccC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC------CcH
Q 000184 501 VQILES-GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT------ATI 573 (1890)
Q Consensus 501 v~lL~~-~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~------~~i 573 (1890)
++++-+ +++++....++.+.|++. ++.+.+.+.+.|+++.|++..-+..+. .....+.|++.|+++ +.+
T Consensus 417 ~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~~~i 492 (708)
T PF05804_consen 417 MQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFVDFI 492 (708)
T ss_pred HHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHHHHH
Confidence 997655 466677788999999998 578889999999999999876554332 234689999998753 456
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcChhHH
Q 000184 574 SQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST--KEETQAKSASALAGIFETRKDLR 651 (1890)
Q Consensus 574 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~--~~~~~~~A~~aL~~L~~~~~~~~ 651 (1890)
.+++.++..++ .-....+|+|.|+++...+.-....+.+.+.+|.|..+|..+ .+++.-.++..++.++.+ +...
T Consensus 493 ~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A 569 (708)
T PF05804_consen 493 GDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECA 569 (708)
T ss_pred HHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHH
Confidence 66777766544 335678888888876532222333455688999999999764 567888889999999975 4555
Q ss_pred HHHHHcCchHHHHHhhc--CCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000184 652 ESSIAVKTLWSVMKLLD--VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 652 ~~~~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~ 729 (1890)
..+...|.++.|+.++. .+|.+.+.+.+.+++++..+. +.....+.+.+++..|+.++++.+++++..|-.+|--++
T Consensus 570 ~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~-~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 570 PLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE-ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh-HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 66789999999999994 567889999999999998885 344554667899999999999999999999999998777
Q ss_pred -cCchHHHHH
Q 000184 730 -LDSEVSEKA 738 (1890)
Q Consensus 730 -~~~~~~~~~ 738 (1890)
.+++..+.+
T Consensus 649 e~d~~w~~ri 658 (708)
T PF05804_consen 649 EYDEEWAERI 658 (708)
T ss_pred HhCHHHHHHh
Confidence 555544433
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=1.1e-19 Score=223.37 Aligned_cols=427 Identities=20% Similarity=0.204 Sum_probs=311.6
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHhhccc-hhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 000184 64 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN-ELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYV 142 (1890)
Q Consensus 64 ~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~ 142 (1890)
..-+|..+++|.+.++.++.+|+.++..+|+++ +.|..+.+.|+|+.||.+|.+.+.+++..|++||+||.++..
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~---- 307 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKS---- 307 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccC----
Confidence 467899999999999999999999999999655 578888889999999999999999999999999999988422
Q ss_pred ccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHH
Q 000184 143 GSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLA 221 (1890)
Q Consensus 143 ~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~ 221 (1890)
.+.++-+|.+++||+.++++|+. .|.++++..+.+|+
T Consensus 308 ------------------------------------------~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LW 345 (717)
T KOG1048|consen 308 ------------------------------------------TDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILW 345 (717)
T ss_pred ------------------------------------------CcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHh
Confidence 12244558889999999999997 78999999999999
Q ss_pred HHhhcCchhhhHhhccchHHHHHHHHcCCC-------------CHhHHHHHHHHHHHhhhcCHHHHHHHHhc-CChHHHH
Q 000184 222 CMMEEDVSVCSRVLAADATKQLLKLLGSGN-------------EASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMI 287 (1890)
Q Consensus 222 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-------------~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv 287 (1890)
||++.|. .++.++ ..++..|..-+-.+. +.++-..++++|+|+++...+.|+.+.++ |.|..|+
T Consensus 346 NLSS~D~-lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~ 423 (717)
T KOG1048|consen 346 NLSSNDA-LKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALL 423 (717)
T ss_pred cccchhH-HHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHH
Confidence 9998854 444443 455666655433221 24577899999999999889999999886 6689999
Q ss_pred HhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCCh
Q 000184 288 NATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 367 (1890)
Q Consensus 288 ~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~ 367 (1890)
..++..- .....+..-.|||++.|+|++......+..- .....+. .. .....+. +
T Consensus 424 ~~iq~~i---~~~~~d~K~VENcvCilRNLSYrl~~Evp~~--------~~~~~~~-----------~~-~~~~~~~--~ 478 (717)
T KOG1048|consen 424 FSIQTAI---QKSDLDSKSVENCVCILRNLSYRLEAEVPPK--------YRQVLAN-----------IA-RLPGVGP--P 478 (717)
T ss_pred HHHHHHH---HhccccchhHHHHHHHHhhcCchhhhhcCHh--------hhhHhhc-----------cc-ccccCCC--c
Confidence 8887432 2234567889999999999998443221110 0000000 00 0000000 0
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchh-
Q 000184 368 LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSL- 445 (1890)
Q Consensus 368 ~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~- 445 (1890)
......+....+... +..-...+-....+|....++++...++....++. +.++.+.+.++.+|.||+......
T Consensus 479 ~~~~gcf~~k~~k~~----~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~ 554 (717)
T KOG1048|consen 479 AESVGCFGFKKRKSD----DNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS 554 (717)
T ss_pred ccccccccchhhhch----hcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch
Confidence 000000000000000 00000000111234445567778888888666665 567899999999999999875432
Q ss_pred ---hHHH-HhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC------CHHHHHHH
Q 000184 446 ---WRAL-QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG------SAKAKEDS 515 (1890)
Q Consensus 446 ---~~~i-~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~~e~a 515 (1890)
+..+ .+..+.++|+++|+.++..+.+.++.+|+||+. +..++..|. .++++.|++.|..+ +.+....+
T Consensus 555 ~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~-d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~v 632 (717)
T KOG1048|consen 555 EYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR-DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAV 632 (717)
T ss_pred hHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc-Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHH
Confidence 2344 677899999999999999999999999999996 678888777 78999999999765 35777889
Q ss_pred HHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCC
Q 000184 516 ASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 516 ~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~ 569 (1890)
+.+|.|+...+..+...+.+.++++.|+.+.++ .+++.-+.|+..|..|+.+.+
T Consensus 633 c~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 633 CHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 999999998888999999999999999999987 456888899999988887554
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.75 E-value=5.2e-17 Score=200.02 Aligned_cols=409 Identities=19% Similarity=0.203 Sum_probs=282.8
Q ss_pred hHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCch--h
Q 000184 153 VPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS--V 230 (1890)
Q Consensus 153 ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~--~ 230 (1890)
+|..+.++. .+++.++..+...+..+|..+...+..+.+.|||+.|+.+|.+++.+++.+||++|+||.++... +
T Consensus 235 lpe~i~mL~---~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 235 LPEVISMLM---SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cHHHHHHHh---ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 455556665 46788999999999999999999999999999999999999999999999999999999977665 8
Q ss_pred hhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCcccc-----chhhhHH
Q 000184 231 CSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFM-----QGEYAQA 305 (1890)
Q Consensus 231 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~-----~~~~~~~ 305 (1890)
+-++.+.++++.++++|+...|.++++..+++||||++ ++..|..|+. .++..|..-...|..... .+-.+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS-~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSS-NDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccc-hhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccce
Confidence 89999999999999999987788999999999999999 5677776655 467777777666653221 1223467
Q ss_pred HHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChH
Q 000184 306 LQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFL 385 (1890)
Q Consensus 306 l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~ 385 (1890)
+..|++++|+|++..... -+..+.+..|.|..+++.++...
T Consensus 390 vf~n~tgcLRNlSs~~~e-------------aR~~mr~c~GLIdaL~~~iq~~i-------------------------- 430 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQE-------------AREQMRECDGLIDALLFSIQTAI-------------------------- 430 (717)
T ss_pred eeehhhhhhccccchhHH-------------HHHHHhhccchHHHHHHHHHHHH--------------------------
Confidence 777888888887652211 11112222233333333322000
Q ss_pred HHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch-----hhHHHHhcCcHHHHHH
Q 000184 386 VQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS-----LWRALQGREGIQLLIS 460 (1890)
Q Consensus 386 ~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~-----~~~~i~~~g~i~~Lv~ 460 (1890)
+. ...|....++++..|+||+..-.. +.......+..
T Consensus 431 --------------------------------~~-~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~----- 472 (717)
T KOG1048|consen 431 --------------------------------QK-SDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARL----- 472 (717)
T ss_pred --------------------------------Hh-ccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccccc-----
Confidence 00 123446677888888888764210 11111100000
Q ss_pred hhCCCCHHHHHHHHHHHHHcccC---------------ChhcHHHHHhcCCcHHHHHhcc-CCCHHHHHHHHHHHHHHhc
Q 000184 461 LLGLSSEQQQECSVALLCLLSNE---------------NDDSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCN 524 (1890)
Q Consensus 461 lL~~~~~~v~~~A~~aL~nL~~~---------------~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~e~a~~aL~~L~~ 524 (1890)
.....+ ...++++..-... .+..-..+....+|.+-..++. +.++.+.|.++.+|-|++.
T Consensus 473 -~~~~~~---~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 473 -PGVGPP---AESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred -ccCCCc---ccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 000000 0222222222211 1111222333335555445554 4478899999999999997
Q ss_pred CC----hHHHHHH-HhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 000184 525 HS----EDIRACV-ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSML 599 (1890)
Q Consensus 525 ~~----~~~r~~i-~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~ 599 (1890)
.+ ...+..+ .+..+.|+|+++++.+++.+.+.++.+|.||+.+...
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn----------------------------- 599 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN----------------------------- 599 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh-----------------------------
Confidence 43 2345555 7789999999999999999999999999999875432
Q ss_pred hhcCchHHHHHhhhhcchHHHHHHHhcCC------CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcC-CCH
Q 000184 600 SVVSFSDILREGSAANDAVETMIKILSST------KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-GSE 672 (1890)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~------~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~ 672 (1890)
+..+ ...+++-|++.|..+ ++++-..+|.+|.++...+..+...+...++++.|+.+..+ .++
T Consensus 600 ---------k~li-gk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~ 669 (717)
T KOG1048|consen 600 ---------KELI-GKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSP 669 (717)
T ss_pred ---------hhhh-hcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCH
Confidence 2233 367799999988653 37899999999999998888877789999999999999855 566
Q ss_pred HHHHHHHHHHHHHH
Q 000184 673 CILVEASRCLAAIF 686 (1890)
Q Consensus 673 ~v~~~a~~aL~~L~ 686 (1890)
...++|...+..|=
T Consensus 670 k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 670 KEFKAASSVLDVLW 683 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888873
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=8.5e-16 Score=168.45 Aligned_cols=369 Identities=17% Similarity=0.214 Sum_probs=275.2
Q ss_pred HHHHHHHHHccCC-ChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhh---cCCHHHHHHHHHHHHHhhccch
Q 000184 22 VAQCIEQLRQSSS-SVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR---SGSLAVKIQAATVLGSLCKENE 97 (1890)
Q Consensus 22 v~~~~~~l~~~~~-~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~---~~~~~~~~~aa~~L~~L~~~~~ 97 (1890)
+.+++..++..-. ..+|...-+.+|.+-++ ++.+.++.+...|+.|.++.++. +++..+-.++..+|..+. .
T Consensus 61 i~~~~~~i~e~i~~~~~E~s~ll~~l~d~ck-~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt---~ 136 (461)
T KOG4199|consen 61 INETVDKIKEHIGQKLEETTELLEQLADECK-KSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT---H 136 (461)
T ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHh-hhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---c
Confidence 6667776666432 12333344444444222 23677778888899999888876 345566677777777775 4
Q ss_pred hhHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHH
Q 000184 98 LRVKVLLGGCIPPLLGLLKS--SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLT 175 (1890)
Q Consensus 98 ~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~ 175 (1890)
.+++++...+...++.+|.. ++.+.-......+..-+ ..+..+++.|++.+++|.+...+.....++ +-+.++
T Consensus 137 ~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac---~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~--~VRel~ 211 (461)
T KOG4199|consen 137 KQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKAC---IMHEVNRQLFMELKILELILQVLNREGKTR--TVRELY 211 (461)
T ss_pred CCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHH---HHhHHHHHHHHHhhHHHHHHHHHcccCccH--HHHHHH
Confidence 56677888889999999964 34444433333333333 357778888999999999998888765553 334678
Q ss_pred HHHHHhccCCh---------hHHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHH
Q 000184 176 GALRNLSTSTE---------GFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLK 245 (1890)
Q Consensus 176 ~~L~~L~~~~~---------~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~ 245 (1890)
++++.|..++| ++.+.++..|++..|++.+.. -++.+....+.+|..++..++ .|..+.+.||+..|++
T Consensus 212 ~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~ 290 (461)
T KOG4199|consen 212 DAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLR 290 (461)
T ss_pred HHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHH
Confidence 99999987765 466778899999999999986 468889999999999998887 8999999999999999
Q ss_pred HHcCCCCHhHH---HHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCc
Q 000184 246 LLGSGNEASVR---AEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLS 322 (1890)
Q Consensus 246 lL~~~~~~~~~---~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~ 322 (1890)
++.+.++...| ..++..|+.|+. ++.+|..|++.||.+.++.++...+ .++.+.+.++.++.-++
T Consensus 291 ~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~-------~~p~Vi~~~~a~i~~l~---- 358 (461)
T KOG4199|consen 291 CIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHS-------DDPLVIQEVMAIISILC---- 358 (461)
T ss_pred HHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcC-------CChHHHHHHHHHHHHHH----
Confidence 99987775555 678888899987 7889999999999999999986543 34445554444443333
Q ss_pred hhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCc
Q 000184 323 NVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPL 402 (1890)
Q Consensus 323 ~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~ 402 (1890)
.+.|+
T Consensus 359 ---------------------------------------------------------------------------LR~pd 363 (461)
T KOG4199|consen 359 ---------------------------------------------------------------------------LRSPD 363 (461)
T ss_pred ---------------------------------------------------------------------------hcCcc
Confidence 24566
Q ss_pred cchhhhhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 000184 403 LSIKLENSEAKRLLVGLITMA--TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLL 480 (1890)
Q Consensus 403 ~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 480 (1890)
+..++.+.|+-...++.|+.. ...+|+++++.++|+.....+++..+.. .|++.|+..-+..++.+...|-.+|+.|
T Consensus 364 hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 364 HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA-NGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 666777788888888888743 4579999999999999987777776664 6788899999989999999999999999
Q ss_pred ccCChhcHH
Q 000184 481 SNENDDSKW 489 (1890)
Q Consensus 481 ~~~~~~~~~ 489 (1890)
.. +..+++
T Consensus 443 Gc-~v~lre 450 (461)
T KOG4199|consen 443 GC-DVYLRE 450 (461)
T ss_pred Cc-chhhHH
Confidence 86 344443
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.70 E-value=6.8e-16 Score=194.34 Aligned_cols=368 Identities=16% Similarity=0.155 Sum_probs=278.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCCCCccccc
Q 000184 69 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS---SAEGQIAAAKTIYAVSQGGAKDYVGSK 145 (1890)
Q Consensus 69 ~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~ls~~~~~~~~~~~ 145 (1890)
.|+.+|...+ +...++.+..+..+++.+..+.+.||+|.|+++|.-. +.+.+..|-.||.||-.....+..+++
T Consensus 201 sllsml~t~D---~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RR 277 (2195)
T KOG2122|consen 201 SLLSMLGTDD---EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRR 277 (2195)
T ss_pred HHhhhcccCC---HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHH
Confidence 4555555553 5678899999999999999999999999999999754 456778888999999885444445555
Q ss_pred hhhhcCChH-------HHHHHHhccCCC---Cch--HHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCC-----
Q 000184 146 IFSTEGVVP-------VLWEQLKNGLKS---GNV--VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG----- 208 (1890)
Q Consensus 146 ~~~~~g~ip-------~L~~ll~~~~~~---~~~--v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~----- 208 (1890)
.+.-.-++. .+|.++...... +++ --..++.+|..+++ ++++|++|-+.||++.+-+|+..+
T Consensus 278 E~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhg 356 (2195)
T KOG2122|consen 278 EKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHG 356 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 333222222 345555442211 111 11234556666664 568999999999999999988642
Q ss_pred -------CHHHHHHHHHHHHHHhhcCchhhhHhhc-cchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHH-HHHHHh
Q 000184 209 -------QSSTQAHVCFLLACMMEEDVSVCSRVLA-ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA-RREIAG 279 (1890)
Q Consensus 209 -------~~~v~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~-~~~i~~ 279 (1890)
+..+|.++..+|.||.+++..++..+.. .|.+..+|..|.+.. .++....+++|+||+|.-+.+ +..+.+
T Consensus 357 p~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE 435 (2195)
T KOG2122|consen 357 PETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRE 435 (2195)
T ss_pred CCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHh
Confidence 3368999999999999999988888754 789999999998864 589999999999999976654 667778
Q ss_pred cCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccc
Q 000184 280 SNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKA 359 (1890)
Q Consensus 280 ~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~ 359 (1890)
.|-+..|+..-....+ .......+.|||||+. .+.+++..+.+.-|+|..++..+.=..
T Consensus 436 ~GsVtaLa~~al~~~k--------EsTLKavLSALWNLSA-------------HcteNKA~iCaVDGALaFLVg~LSY~~ 494 (2195)
T KOG2122|consen 436 TGSVTALAACALRNKK--------ESTLKAVLSALWNLSA-------------HCTENKAEICAVDGALAFLVGTLSYEG 494 (2195)
T ss_pred hhhHHHHHHHHHHhcc--------cchHHHHHHHHhhhhh-------------cccccchhhhcccchHHHHHhhccccC
Confidence 8999999887655443 2345678899999987 345677777777788887776554000
Q ss_pred cCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHh----hCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHH
Q 000184 360 ESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL----YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRAL 435 (1890)
Q Consensus 360 ~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L----~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 435 (1890)
. .. . -.+-+.+-..|.+. +.+.+.+..+.+..|+..|++.|++.+..+.-++|.+|
T Consensus 495 q-------s~----t---------LaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 495 Q-------SN----T---------LAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred C-------cc----h---------hhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 0 00 0 11233444445444 45778899999999999999999999999999999999
Q ss_pred HHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHccc
Q 000184 436 LKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN 482 (1890)
Q Consensus 436 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~ 482 (1890)
|||+..++...+.+.+.|+++.|..++.+.+..+-..++.+|.||-.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999985
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=3.2e-15 Score=188.43 Aligned_cols=367 Identities=19% Similarity=0.186 Sum_probs=285.2
Q ss_pred ChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCCh---HHHHHHHHHHHHHhccCchhhHHHHhhhCChHHH
Q 000184 1255 GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLE---REQHAAIAALVRLLSENPSRALAVADVEMNAVDV 1331 (1890)
Q Consensus 1255 ~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~---~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~ 1331 (1890)
...++..-++.+..++.+.+....+...|+++.|+++|..+++ +.|..|-.+|.||..+++..+ .-..
T Consensus 207 ~t~D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k---------r~RR 277 (2195)
T KOG2122|consen 207 GTDDEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK---------RGRR 277 (2195)
T ss_pred ccCCHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh---------hhHH
Confidence 3446667788899999999999999999999999999976544 566778899999987553322 1223
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCC
Q 000184 1332 LCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGA 1411 (1890)
Q Consensus 1332 L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ga 1411 (1890)
.+++|.-- ++++......+.++-.... .+. -.+.+.....|+.+|.++++|++.|..+.+.|+
T Consensus 278 E~kvL~lL--eQIraYC~~~~~~lqar~~---------~~a------pa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~ 340 (2195)
T KOG2122|consen 278 EKKVLHLL--EQIRAYCETCWTWLQARGP---------AIA------PASDEHQLCAALCTLMKLSFDEEHRHAMNELGG 340 (2195)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhcCC---------CCC------CcccchhhHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 34444321 2455555555544422211 111 123344455788999999999999999999999
Q ss_pred hHHHHHhhc-----CC-------cHhHHHHHHHHHHHhccCChhhHHHH-HHcCcHHHHHHHhccCChhHHHHHHHHHHH
Q 000184 1412 VIPLVGLLY-----GR-------NYMLHEAISRALVKLGKDRPSCKLEM-VKAGVIESVLDILHEAPDFLCSAFAELLRI 1478 (1890)
Q Consensus 1412 v~~L~~lL~-----~~-------~~~vr~~A~~aL~~l~~~~~~~~~~l-~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~ 1478 (1890)
++.+.+|++ ++ ...+|++|.+||-||......+|..+ ...|+++.++..|...++++.+..|.+|+|
T Consensus 341 LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRN 420 (2195)
T KOG2122|consen 341 LQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRN 420 (2195)
T ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 999998886 22 34689999999999999987888888 667999999999999999999999999999
Q ss_pred HHhcccccCCcc--ccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcC-CCcccccccccCCchhhhhhccCC----CC
Q 000184 1479 LTNNAGIAKGPS--AAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEH-PQCRADYSLTSHQAIEPLIPLLDS----PA 1551 (1890)
Q Consensus 1479 L~~~~~~~~~~~--~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~-~~~~~~~~~~~~~~i~~Lv~lL~s----~~ 1551 (1890)
|++..+.....+ +.+-|..|...--+.. .....+..+.|||||..+ .++...+ ....|++..||.+|.. ..
T Consensus 421 LSWRAD~nmKkvLrE~GsVtaLa~~al~~~-kEsTLKavLSALWNLSAHcteNKA~i-CaVDGALaFLVg~LSY~~qs~t 498 (2195)
T KOG2122|consen 421 LSWRADSNMKKVLRETGSVTALAACALRNK-KESTLKAVLSALWNLSAHCTENKAEI-CAVDGALAFLVGTLSYEGQSNT 498 (2195)
T ss_pred ccccccccHHHHHHhhhhHHHHHHHHHHhc-ccchHHHHHHHHhhhhhcccccchhh-hcccchHHHHHhhccccCCcch
Confidence 999998775555 7777888887754432 234567889999999877 4555554 5678999999999984 46
Q ss_pred HHHHHHHHHHHHHhhc----ccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-H--HHhhcChHHHH
Q 000184 1552 PAVQQLAAELLSHLLL----EEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN-E--IAKEGGVTELS 1624 (1890)
Q Consensus 1552 ~~vq~~A~~aL~~l~~----~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~-~--l~~~g~I~~Ll 1624 (1890)
..|.+.|-++|.|.+. .++++..++.++++..|++.|++++.-+..++|.+|+||+--.+. . |++.|.|..|.
T Consensus 499 LaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLr 578 (2195)
T KOG2122|consen 499 LAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLR 578 (2195)
T ss_pred hhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHH
Confidence 7789999999998776 488888999999999999999999999999999999999744333 3 99999999999
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHhhhhhc
Q 000184 1625 KIILQADPSLPHALWESAASVLSSILQFS 1653 (1890)
Q Consensus 1625 ~~l~~~~~~~~~~~~~~a~~~l~~~~~~~ 1653 (1890)
.++.+.+. -+++.+..+|.|+..+.
T Consensus 579 nLIhSKhk----MIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 579 NLIHSKHK----MIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHhhhhh----hhhhhHHHHHHHHhcCC
Confidence 99998764 55677888999988654
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.66 E-value=1.1e-13 Score=156.44 Aligned_cols=449 Identities=14% Similarity=0.077 Sum_probs=315.3
Q ss_pred cCCHHHHHHHHHHHHHhhccchhhHHHHh----cCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcC
Q 000184 76 SGSLAVKIQAATVLGSLCKENELRVKVLL----GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEG 151 (1890)
Q Consensus 76 ~~~~~~~~~aa~~L~~L~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g 151 (1890)
..+..+....+..++..++++..|..+.. .+.+++|.+...+++.++..++.+||.|+++ ..+.+|..|.+.|
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCy---dn~E~R~a~~~lg 129 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICY---DNNENRAAFFNLG 129 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhc---cCchhHHHHHhcC
Confidence 34556778888889998888877766654 4667888888889999999999999999999 4678888899999
Q ss_pred ChHHHHHHHhccCCCCc----hHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhh
Q 000184 152 VVPVLWEQLKNGLKSGN----VVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMME 225 (1890)
Q Consensus 152 ~ip~L~~ll~~~~~~~~----~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~L~~ 225 (1890)
.-..+++.+++....+. ..-....+.|.|...+.++.+.++.+.|.++.|...+.-+ +.+..+.......++.+
T Consensus 130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls 209 (604)
T KOG4500|consen 130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLS 209 (604)
T ss_pred CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHH
Confidence 98888888887655443 3445667889999999999999999999999999998754 44444444444444442
Q ss_pred cCchh-hhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhH
Q 000184 226 EDVSV-CSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQ 304 (1890)
Q Consensus 226 ~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~ 304 (1890)
-..++ .+...+......+++++.+...++.++....+|...+. ++..+-.+++.|-+..++.+++.-. .+....+
T Consensus 210 ~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k-~~t~k~d-- 285 (604)
T KOG4500|consen 210 FVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMK-DFTKKTD-- 285 (604)
T ss_pred HHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcc-cccchHH--
Confidence 22222 33345566677788888776666789999999999998 7888999999998888888886511 0000000
Q ss_pred HHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCCh
Q 000184 305 ALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPF 384 (1890)
Q Consensus 305 ~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~ 384 (1890)
.. ++..
T Consensus 286 -----~~-~l~k-------------------------------------------------------------------- 291 (604)
T KOG4500|consen 286 -----ML-NLFK-------------------------------------------------------------------- 291 (604)
T ss_pred -----HH-HHHH--------------------------------------------------------------------
Confidence 00 0000
Q ss_pred HHHHHHHHHHHHhhCCCccchhhhhcC-cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC
Q 000184 385 LVQERTIEALASLYGNPLLSIKLENSE-AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG 463 (1890)
Q Consensus 385 ~~~~~a~~aL~~L~~~~~~~~~l~~~g-~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 463 (1890)
++++-+.-+.-..+.-.++...+ ..+.++..+.+.|.+.+..+.-+++|++.. +.++..+++.+.+..|++++.
T Consensus 292 ----~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~ 366 (604)
T KOG4500|consen 292 ----RIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLM 366 (604)
T ss_pred ----hhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHH
Confidence 00001111111111112222223 677888999999999999999999999988 577888889999999999885
Q ss_pred C-----CCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHh-CC
Q 000184 464 L-----SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES-AD 537 (1890)
Q Consensus 464 ~-----~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~-~g 537 (1890)
. ++.+.|.+++.+|+|+.- ...++..+..+|.++.+...++..+|.++..-...+..+-...+.....+.+ ..
T Consensus 367 ~~~~vdgnV~~qhA~lsALRnl~I-Pv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~ 445 (604)
T KOG4500|consen 367 QEKDVDGNVERQHACLSALRNLMI-PVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPE 445 (604)
T ss_pred HhcCCCccchhHHHHHHHHHhccc-cCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHH
Confidence 3 577889999999999995 5678999999999999999999999999888888877765432212222211 22
Q ss_pred CHHHHHHHhhcCChh-HHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcc
Q 000184 538 AVPALLWLLKNGSAN-GKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAND 616 (1890)
Q Consensus 538 ~i~~Lv~ll~~~~~~-~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~ 616 (1890)
.+..|+...++++-. +.-...+.|..|..|+.. .+ +-..+...|
T Consensus 446 l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~----------------------------------kd-v~~tvpksg 490 (604)
T KOG4500|consen 446 LFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY----------------------------------KD-VILTVPKSG 490 (604)
T ss_pred HHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh----------------------------------hh-hHhhccccc
Confidence 334444444443322 344444555544443221 01 112455678
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 000184 617 AVETMIKILSSTKEETQAKSASALAGIFET 646 (1890)
Q Consensus 617 ~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~ 646 (1890)
||..++.++...+-.+|..|..+|+.+...
T Consensus 491 ~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 491 GIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred cHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 899999999999999999999998887764
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.9e-11 Score=153.54 Aligned_cols=466 Identities=14% Similarity=0.120 Sum_probs=271.4
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCCcccc
Q 000184 66 AVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGS 144 (1890)
Q Consensus 66 ~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~ls~~~~~~~~~~ 144 (1890)
.+..|++-|.+.+.+++..|-++|.++.+.+. ..+.|..++. +.++++|..|+.-++.+....- .+-
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w---~~l 72 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHW---SRL 72 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh---hcC
Confidence 45667777888999999999999998864432 5677777776 5678899888888888776211 100
Q ss_pred chhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCC-hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000184 145 KIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 223 (1890)
Q Consensus 145 ~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L 223 (1890)
..=++..+-..|+..+... ..+.++...+.+...++... |+.|. +.++.|.+..+++++..|+.|..+|..+
T Consensus 73 ~~e~~~siks~lL~~~~~E--~~~~vr~k~~dviAeia~~~l~e~WP-----ell~~L~q~~~S~~~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 73 SAEVQQSIKSSLLEIIQSE--TEPSVRHKLADVIAEIARNDLPEKWP-----ELLQFLFQSTKSPNPSLRESALLILSSL 145 (1075)
T ss_pred CHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccchH-----HHHHHHHHHhcCCCcchhHHHHHHHHhh
Confidence 1112223333455555443 33456666666666666432 33676 4478899999999999999999999887
Q ss_pred hhcCchhhhHhhccchHHHH----HHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhc-CChHHHHHhhcCCCcccc
Q 000184 224 MEEDVSVCSRVLAADATKQL----LKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFM 298 (1890)
Q Consensus 224 ~~~~~~~~~~i~~~g~i~~L----v~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~ 298 (1890)
....+.. ..+.++.+ .+-+..+.+. +|..|+.++...+...+.++...... .-+|.++..+....
T Consensus 146 ~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i---- 215 (1075)
T KOG2171|consen 146 PETFGNT-----LQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVI---- 215 (1075)
T ss_pred hhhhccc-----cchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhh----
Confidence 7544321 22333344 4444554444 99999999999887654333333322 34666777665432
Q ss_pred chhhhHHHHHHHHHHHHHhhCCCchhhh-hhhc-------cccCCCChhhhhhhHhHHHHHHHHhccc---ccCCCCCCh
Q 000184 299 QGEYAQALQENAMCALANISGGLSNVIS-SLGQ-------SLESCSSPAQVADTLGALASALMIYDSK---AESTKPSDP 367 (1890)
Q Consensus 299 ~~~~~~~l~e~a~~aL~nl~~~~~~~i~-~l~~-------~~~~~~~~~~~~~~~gal~~ll~~~~~~---~~~~~~~~~ 367 (1890)
..++...-..+..+|..+....+.++. .++. ...+.+....+. .-+|..++...+.. ......+.+
T Consensus 216 -~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R--~~ALe~ivs~~e~Ap~~~k~~~~~~~ 292 (1075)
T KOG2171|consen 216 -QDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIR--HLALEFLVSLSEYAPAMCKKLALLGH 292 (1075)
T ss_pred -hccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHH--HHHHHHHHHHHHhhHHHhhhchhhhc
Confidence 111222233444444444432222111 1110 001111111111 12233332222210 000011111
Q ss_pred hhhHHHHHhhcCCCCCh---------------HHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHH
Q 000184 368 LIVEQTLVNQFKPRLPF---------------LVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 432 (1890)
Q Consensus 368 ~~i~~~L~~ll~~~~~~---------------~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~ 432 (1890)
.+.+.+++++.....+ .-...|.++|-.++..-..+.. -.-.++.+-.++++.++.-|..++
T Consensus 293 -~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v--~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 293 -TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV--LPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred -cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe--hHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2333444433322111 1123344444444322111111 112344556677899999999999
Q ss_pred HHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC-CHHH
Q 000184 433 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKA 511 (1890)
Q Consensus 433 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~ 511 (1890)
.+|..++.+..+.-.... ...++.++..|+++++.+|++|+.+++.++.+.....+.-...-.++.|+..+.+. ++++
T Consensus 370 ~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV 448 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRV 448 (1075)
T ss_pred HHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHH
Confidence 999999877554333222 24678888999999999999999999999976665555555666888999999876 7899
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHh--CCCHH-HHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000184 512 KEDSASILRNLCNHSEDIRACVES--ADAVP-ALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 512 ~e~a~~aL~~L~~~~~~~r~~i~~--~g~i~-~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~ 569 (1890)
+.+|+.++.|++...+. ..+.. .+.+. .+..+++++++.+++.++.+++..+....
T Consensus 449 ~ahAa~al~nf~E~~~~--~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 449 QAHAAAALVNFSEECDK--SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 99999999999874322 11111 23444 33345566778888888888887765433
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.2e-09 Score=140.34 Aligned_cols=478 Identities=17% Similarity=0.151 Sum_probs=298.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcC-----HH
Q 000184 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC-----KD 272 (1890)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~-----~~ 272 (1890)
+..|+.-|.+++.+++..|-..|.++... ...++.|..++....++++|..|+..++.+..+. .+
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~----------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKT----------EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcc----------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 55667777788899999999999665432 2268899999999989999999999999987642 23
Q ss_pred HHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHH
Q 000184 273 ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 352 (1890)
Q Consensus 273 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll 352 (1890)
.|..|.. .|+..+.+.. .+.++..-+.++..++.+. ++-
T Consensus 76 ~~~siks-----~lL~~~~~E~--------~~~vr~k~~dviAeia~~~--------------------------l~e-- 114 (1075)
T KOG2171|consen 76 VQQSIKS-----SLLEIIQSET--------EPSVRHKLADVIAEIARND--------------------------LPE-- 114 (1075)
T ss_pred HHHHHHH-----HHHHHHHhcc--------chHHHHHHHHHHHHHHHhc--------------------------ccc--
Confidence 3443322 2333333322 2445555555554444311 000
Q ss_pred HHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCC--CccchhhhhcCcHHHHHHHhcCCCHHHHHH
Q 000184 353 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN--PLLSIKLENSEAKRLLVGLITMATNEVQEE 430 (1890)
Q Consensus 353 ~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~--~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~ 430 (1890)
-|. .+.+.|....++.++.. |+.|+..|.++... ...+..+. ...+.+.+.+.+++..+|..
T Consensus 115 -~WP------------ell~~L~q~~~S~~~~~-rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~ 178 (1075)
T KOG2171|consen 115 -KWP------------ELLQFLFQSTKSPNPSL-RESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVA 178 (1075)
T ss_pred -chH------------HHHHHHHHHhcCCCcch-hHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHH
Confidence 021 35566777777776664 99999999988432 22222222 23455566677666669999
Q ss_pred HHHHHHHhhccCchhhHHHHhc-CcHHHHHHhh----CCCCHHHHHHHHHHHHHcccCChhc-HHHHHhcCCcHHHHHhc
Q 000184 431 LVRALLKLCNNEGSLWRALQGR-EGIQLLISLL----GLSSEQQQECSVALLCLLSNENDDS-KWAITAAGGIPPLVQIL 504 (1890)
Q Consensus 431 a~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~lL----~~~~~~v~~~A~~aL~nL~~~~~~~-~~~i~~~g~i~~Lv~lL 504 (1890)
+++++.......+++....... ..+|.++..+ ..++.+.-..+..+|-.+....+.. +..+.+ .|..-.++.
T Consensus 179 a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia 256 (1075)
T KOG2171|consen 179 AVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIA 256 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHh
Confidence 9999988776543323222221 2355555544 4566666666777787777433332 222211 444444555
Q ss_pred cCC--CHHHHHHHHHHHHHHhcCChHHHHHHHh--CCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 000184 505 ESG--SAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALL 580 (1890)
Q Consensus 505 ~~~--~~~~~e~a~~aL~~L~~~~~~~r~~i~~--~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL 580 (1890)
.+. ++.+|..|...|..++..-+..++.-.. ...++.++..+.....+ -.... .|. +
T Consensus 257 ~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D---------~ew~~-~d~---------~ 317 (1075)
T KOG2171|consen 257 KNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD---------DEWSN-EDD---------L 317 (1075)
T ss_pred hcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc---------hhhcc-ccc---------c
Confidence 554 6788999999998888742222222111 22344555555443222 00111 110 0
Q ss_pred hcCC-cchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCc
Q 000184 581 TSDL-PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKT 659 (1890)
Q Consensus 581 ~~~~-~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~ 659 (1890)
.+++ ......|..++..+++--+...++ ....+.+-.++.|.+..-|.+|..+|+.++.+..+.-.. .-..+
T Consensus 318 ded~~~~~~~~A~~~lDrlA~~L~g~~v~------p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~I 390 (1075)
T KOG2171|consen 318 DEDDEETPYRAAEQALDRLALHLGGKQVL------PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKI 390 (1075)
T ss_pred ccccccCcHHHHHHHHHHHHhcCChhheh------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHH
Confidence 1111 234566788888777643322211 223677788899999999999999999999997765332 33457
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHh--cCchHHH
Q 000184 660 LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLI--LDSEVSE 736 (1890)
Q Consensus 660 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~-~~ev~~~aa~aL~nL~--~~~~~~~ 736 (1890)
++..+..|.++++.|+.+|+.+++.++.+-...... -...-.++.|+..+.++ ++.|+..|+.++-|++ ..++...
T Consensus 391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk-~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~ 469 (1075)
T KOG2171|consen 391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK-KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILE 469 (1075)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH-HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 788888899999999999999999998765432222 24455677888888776 4689999999999998 3344444
Q ss_pred HHHhcCcHH-HHHHHHhcCCcchHHHHHHHHHHHhhc
Q 000184 737 KAIAEEIIL-PATRVLCEGTISGKTLAAAAIARLLHS 772 (1890)
Q Consensus 737 ~~~~~~~v~-~L~~ll~~~~~~~~~~aa~aL~~L~~~ 772 (1890)
.+ -+++++ .+..+.+++++.+++.+..+|+.....
T Consensus 470 pY-Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 470 PY-LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HH-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 44 355666 555556666667999999999887643
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.63 E-value=2.9e-13 Score=153.20 Aligned_cols=425 Identities=15% Similarity=0.105 Sum_probs=319.8
Q ss_pred HHHHHHHHHHHhhCCCccchhhh----hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHh
Q 000184 386 VQERTIEALASLYGNPLLSIKLE----NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 461 (1890)
Q Consensus 386 ~~~~a~~aL~~L~~~~~~~~~l~----~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 461 (1890)
+...+..+++..+.++.-|..+. .++++.+|.+...+++.++.+.+.++|+|+|+.+.+.+..+.+.||-+.+++.
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~ 137 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDV 137 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhh
Confidence 45556666777766665544443 35677888888888899999999999999999999999999999998888888
Q ss_pred hCCC-------CHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC--CHHHHHHHHHHHHHHhcCC-hHHHH
Q 000184 462 LGLS-------SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHS-EDIRA 531 (1890)
Q Consensus 462 L~~~-------~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~e~a~~aL~~L~~~~-~~~r~ 531 (1890)
|+.- +.+...-+.+.|.|...++++.+..+.+.|.++.|...+.-+ +....+.......||.+.. +....
T Consensus 138 L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~ 217 (604)
T KOG4500|consen 138 LKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYP 217 (604)
T ss_pred hccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhh
Confidence 8742 234555577899999988889999999999999999988654 6677788888888877531 22344
Q ss_pred HHHhCCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCC-------CCcHHHHHHHHhcCCcc-hHHHHHHHHHHHh---
Q 000184 532 CVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSD-------TATISQLTALLTSDLPE-SKVYVLDALKSML--- 599 (1890)
Q Consensus 532 ~i~~~g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~-------~~~i~~L~~lL~~~~~~-~~~~a~~aL~~L~--- 599 (1890)
...+......+++++.+. .++..+..-..|...+.++. .+-++.++++++..... .+.....-+...+
T Consensus 218 ~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~ 297 (604)
T KOG4500|consen 218 FCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELD 297 (604)
T ss_pred hhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHh
Confidence 445677788888888774 44555656666666665443 35667777787763322 2222221111111
Q ss_pred h-hcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhc-----CCCHH
Q 000184 600 S-VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-----VGSEC 673 (1890)
Q Consensus 600 ~-~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~-----~~~~~ 673 (1890)
. +...++..|........+..++.+++|.+...+..++-+++|+++. ++.|-.+++.+.+..|+..+. +++.+
T Consensus 298 vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~ 376 (604)
T KOG4500|consen 298 VLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNVE 376 (604)
T ss_pred hhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 1 1223333455555555788899999999999999999999999996 678888999999999999983 45667
Q ss_pred HHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCch-HHHHHH-hcCcHHHHHHHH
Q 000184 674 ILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE-VSEKAI-AEEIILPATRVL 751 (1890)
Q Consensus 674 v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~-~~~~~~-~~~~v~~L~~ll 751 (1890)
.+.+++.+|+|+.... .++..+...|.++.++..++...+.++..-..++.-+....+ ...+.. ....++.|+.+.
T Consensus 377 ~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Ws 454 (604)
T KOG4500|consen 377 RQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWS 454 (604)
T ss_pred hHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhh
Confidence 8999999999998765 677778999999999999999999999888888887775555 555555 568899999999
Q ss_pred hcCCcc-hHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHH
Q 000184 752 CEGTIS-GKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAIL 815 (1890)
Q Consensus 752 ~~~~~~-~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l 815 (1890)
++.+.. +..+.-+.|..+.++....+ +...+...|+++.++.++...+.-.. .+|+-+|.-+
T Consensus 455 ks~D~aGv~gESnRll~~lIkHs~~kd-v~~tvpksg~ik~~Vsm~t~~hi~mq-nEalVal~~~ 517 (604)
T KOG4500|consen 455 KSPDFAGVAGESNRLLLGLIKHSKYKD-VILTVPKSGGIKEKVSMFTKNHINMQ-NEALVALLST 517 (604)
T ss_pred hCCccchhhhhhhHHHHHHHHhhHhhh-hHhhccccccHHHHHHHHHHhhHHHh-HHHHHHHHHH
Confidence 999987 88899999999988765543 33445667999999999998776666 7777777655
No 21
>PRK09687 putative lyase; Provisional
Probab=99.60 E-value=3.5e-14 Score=165.70 Aligned_cols=258 Identities=16% Similarity=0.118 Sum_probs=211.7
Q ss_pred hcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhH
Q 000184 1240 AFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1319 (1890)
Q Consensus 1240 ~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 1319 (1890)
+.-.+++|...|.+.+..+|..|+++|..+ +...+++.+..++++.+..+|..|+++|+.|.......
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~----------~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~-- 88 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLR----------GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQ-- 88 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhc----------CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccch--
Confidence 445789999999999999999999999875 34556899999999999999999999999998532211
Q ss_pred HHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCC
Q 000184 1320 AVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD 1399 (1890)
Q Consensus 1320 ~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 1399 (1890)
..+++.|..++..+++..|+..++.+|+.+...... .....++.+...+.++++.+|..++.+|+++..
T Consensus 89 ------~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 89 ------DNVFNILNNLALEDKSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ------HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-
Confidence 236788888865556788999999999998533211 123456677888889999999999999998852
Q ss_pred chHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHH
Q 000184 1400 EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRIL 1479 (1890)
Q Consensus 1400 ~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L 1479 (1890)
..+++.|+.+++++++.+|..|+.+|+++..+.+. +++.|+..|.++++.|+..++.+|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD---------IREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 23689999999999999999999999999655433 678999999999999999998888664
Q ss_pred HhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccC-CCCHHHHHHH
Q 000184 1480 TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD-SPAPAVQQLA 1558 (1890)
Q Consensus 1480 ~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~-s~~~~vq~~A 1558 (1890)
.. ..++++|++.|.+++ ++..++.+|+++ ....+++.|..+++ ++|+.++..|
T Consensus 220 ~~----------~~av~~Li~~L~~~~----~~~~a~~ALg~i------------g~~~a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 220 KD----------KRVLSVLIKELKKGT----VGDLIIEAAGEL------------GDKTLLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred CC----------hhHHHHHHHHHcCCc----hHHHHHHHHHhc------------CCHhHHHHHHHHHhhCCChhHHHHH
Confidence 33 346999999999733 688899999999 77889999999997 8999999999
Q ss_pred HHHHHH
Q 000184 1559 AELLSH 1564 (1890)
Q Consensus 1559 ~~aL~~ 1564 (1890)
.++|..
T Consensus 274 ~~a~~~ 279 (280)
T PRK09687 274 IDKLKR 279 (280)
T ss_pred HHHHhc
Confidence 998864
No 22
>PRK09687 putative lyase; Provisional
Probab=99.59 E-value=7.4e-14 Score=163.03 Aligned_cols=256 Identities=15% Similarity=0.088 Sum_probs=209.9
Q ss_pred cCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhh
Q 000184 1282 RQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRI 1361 (1890)
Q Consensus 1282 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~ 1361 (1890)
.-.+++|+..|.+.+..+|..|+++|..+.. ..+.+.+.+++.+. +..++..++.+|+.+-.....
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------------~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~ 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-------------QDVFRLAIELCSSK-NPIERDIGADILSQLGMAKRC 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-------------chHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccc
Confidence 4468999999999999999999999998874 34677788887764 678999999999998543221
Q ss_pred HHHHHhhCchHHHHHH-HccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccC
Q 000184 1362 RSTVAAARCVEPLVSL-LVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1440 (1890)
Q Consensus 1362 ~~~~~~~~~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 1440 (1890)
...+++.|..+ ++++++.+|..|+.+|++++...... ...+++.+...+.+.+..||..|+.+|++++..
T Consensus 88 -----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 88 -----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE 158 (280)
T ss_pred -----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH
Confidence 23467777776 67889999999999999997222100 112467788888899999999999999999866
Q ss_pred ChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHH
Q 000184 1441 RPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLV 1520 (1890)
Q Consensus 1441 ~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~ 1520 (1890)
. +++.|+.+|.++++.|+..++.+|+.+... ....+++|+.+|.+++ ++||..|+.+|+
T Consensus 159 ~-----------ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~--~~VR~~A~~aLg 217 (280)
T PRK09687 159 A-----------AIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKN--EEIRIEAIIGLA 217 (280)
T ss_pred H-----------HHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCC--hHHHHHHHHHHH
Confidence 5 889999999999999999999998765211 2346899999999887 999999999999
Q ss_pred HhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhc-CCCHHHHHHH
Q 000184 1521 NILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLG-SGIHILQQRA 1599 (1890)
Q Consensus 1521 nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~-s~~~~v~~~A 1599 (1890)
++ ....+++.|+..|++++ ++..++.+|+.++. ..+++.|.++++ +.++.++..|
T Consensus 218 ~~------------~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 218 LR------------KDKRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred cc------------CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHH
Confidence 98 77889999999999876 67889999998875 468999999996 8899999999
Q ss_pred HHHHHH
Q 000184 1600 VKALVS 1605 (1890)
Q Consensus 1600 ~~aL~~ 1605 (1890)
..+|..
T Consensus 274 ~~a~~~ 279 (280)
T PRK09687 274 IDKLKR 279 (280)
T ss_pred HHHHhc
Confidence 988754
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.9e-12 Score=142.53 Aligned_cols=330 Identities=14% Similarity=0.170 Sum_probs=254.5
Q ss_pred cCChHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHh
Q 000184 105 GGCIPPLLGLLK---SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 181 (1890)
Q Consensus 105 ~g~i~~Lv~lL~---~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L 181 (1890)
.|..+.++.++. +++......+..+|..+.. +..-|....++..++++|.... ++.++......+++.-
T Consensus 103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~-------~qpdl~da~g~~vvv~lL~~~~-~~~dlt~~~~~~v~~A 174 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPNESVLKKSLEAINSLTH-------KQPDLFDAEAMAVVLKLLALKV-ESEEVTLLTLQWLQKA 174 (461)
T ss_pred CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhc-------CCcchhccccHHHHHHHHhccc-chHHHHHHHHHHHHHH
Confidence 366666666654 3444444445555554444 2233566667778888887643 3344555666778888
Q ss_pred ccCChhHHHHHHhcCCHHHHHHhh-cCCCHHHHHHHHHHHHHHhhcCc---------hhhhHhhccchHHHHHHHHcCCC
Q 000184 182 STSTEGFWAATVQAGGIDILVKLL-TLGQSSTQAHVCFLLACMMEEDV---------SVCSRVLAADATKQLLKLLGSGN 251 (1890)
Q Consensus 182 ~~~~~~~~~~i~~~g~v~~Lv~lL-~~~~~~v~~~a~~~L~~L~~~~~---------~~~~~i~~~g~i~~Lv~lL~~~~ 251 (1890)
|..++.++..+.+.+..+.+.+.| +++...+.+..+++++-|...+. .....+...|++..|++.+..+-
T Consensus 175 c~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~ 254 (461)
T KOG4199|consen 175 CIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI 254 (461)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC
Confidence 888999999999999999999555 45666788888999987765543 12345677888999999999988
Q ss_pred CHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhcc
Q 000184 252 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQS 331 (1890)
Q Consensus 252 ~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~ 331 (1890)
|+++......+|..|+- +++..+.|.+.||+..|++.+.+... ...+
T Consensus 255 dp~~L~~l~~tl~~lAV-r~E~C~~I~e~GGl~tl~~~i~d~n~--------~~~r------------------------ 301 (461)
T KOG4199|consen 255 DPDSLVSLSTTLKALAV-RDEICKSIAESGGLDTLLRCIDDSNE--------QGNR------------------------ 301 (461)
T ss_pred CccHHHHHHHHHHHHHH-HHHHHHHHHHccCHHHHHHHHhhhch--------hhHH------------------------
Confidence 88999999999999999 67889999999999999999976431 0000
Q ss_pred ccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcC
Q 000184 332 LESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE 411 (1890)
Q Consensus 332 ~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g 411 (1890)
..-..++..|..|+++.+++..|.+.|
T Consensus 302 -----------------------------------------------------~l~k~~lslLralAG~DsvKs~IV~~g 328 (461)
T KOG4199|consen 302 -----------------------------------------------------TLAKTCLSLLRALAGSDSVKSTIVEKG 328 (461)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHHhCCCchHHHHHHhc
Confidence 012345556677788899999999999
Q ss_pred cHHHHHHHhc--CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCC--CHHHHHHHHHHHHHcccCChhc
Q 000184 412 AKRLLVGLIT--MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDDS 487 (1890)
Q Consensus 412 ~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~ 487 (1890)
+.+.++.++. +.+|.+-..++.++.-||...+++...+++.|+-...++.++.+ ...+|.+|++.++|++..+.++
T Consensus 329 g~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 329 GLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred ChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999998884 67899999999999999999999999999999999999999865 4678999999999999877777
Q ss_pred HHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHH
Q 000184 488 KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIR 530 (1890)
Q Consensus 488 ~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r 530 (1890)
+..+.. .|++.|+..-...++.++..+-.+|..|..+ ..+|
T Consensus 409 ~~~~l~-~GiE~Li~~A~~~h~tce~~akaALRDLGc~-v~lr 449 (461)
T KOG4199|consen 409 RTILLA-NGIEKLIRTAKANHETCEAAAKAALRDLGCD-VYLR 449 (461)
T ss_pred cchHHh-ccHHHHHHHHHhcCccHHHHHHHHHHhcCcc-hhhH
Confidence 766665 4789999999888999999999999999885 3444
No 24
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.57 E-value=2.5e-13 Score=185.39 Aligned_cols=278 Identities=19% Similarity=0.144 Sum_probs=230.1
Q ss_pred hcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhH
Q 000184 1240 AFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1319 (1890)
Q Consensus 1240 ~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 1319 (1890)
....++.|+..|+++++.+|..|+.+|+.+ +...+++.|+..|++.+..+|..|+.+|.++...
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~----------~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------ 682 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTET----------TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEV------ 682 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhh----------cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------
Confidence 345788999999999999999999999875 3455789999999999999999999999998642
Q ss_pred HHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCC
Q 000184 1320 AVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD 1399 (1890)
Q Consensus 1320 ~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 1399 (1890)
....+.|...|.+ ++..++..+...|..+. .+....|+..|.++++.+|..|+.+|..+.
T Consensus 683 ------~~~~~~L~~~L~~-~d~~VR~~A~~aL~~~~-----------~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~-- 742 (897)
T PRK13800 683 ------LPPAPALRDHLGS-PDPVVRAAALDVLRALR-----------AGDAALFAAALGDPDHRVRIEAVRALVSVD-- 742 (897)
T ss_pred ------cCchHHHHHHhcC-CCHHHHHHHHHHHHhhc-----------cCCHHHHHHHhcCCCHHHHHHHHHHHhccc--
Confidence 1234567778876 47789999999888753 122356788999999999999999999873
Q ss_pred chHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHH
Q 000184 1400 EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRIL 1479 (1890)
Q Consensus 1400 ~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L 1479 (1890)
..+.|..++.++++.+|..++.+|+.++...+ ..++.|..++.++++.++..++.+|+.+
T Consensus 743 -----------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 743 -----------DVESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred -----------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 23567889999999999999999999987642 1468899999999988999888888765
Q ss_pred HhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHH
Q 000184 1480 TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAA 1559 (1890)
Q Consensus 1480 ~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~ 1559 (1890)
..... .++.++..|.+++ +.||..|+++|..+ .....++.|+.+|+++++.||..|+
T Consensus 803 g~~~~---------~~~~l~~aL~d~d--~~VR~~Aa~aL~~l------------~~~~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 803 GCPPD---------DVAAATAALRASA--WQVRQGAARALAGA------------AADVAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred CCcch---------hHHHHHHHhcCCC--hHHHHHHHHHHHhc------------cccchHHHHHHHhcCCCHHHHHHHH
Confidence 33221 3577899999887 99999999999987 6677899999999999999999999
Q ss_pred HHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000184 1560 ELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVS 1605 (1890)
Q Consensus 1560 ~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~ 1605 (1890)
++|+.+.. .....+.|.+.+++++++||..|.++|..
T Consensus 860 ~aL~~~~~---------~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 860 LALTRWPG---------DPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHhccCC---------CHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99998732 23467899999999999999999999863
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.51 E-value=1.3e-12 Score=178.50 Aligned_cols=277 Identities=19% Similarity=0.144 Sum_probs=226.7
Q ss_pred cCcHHHHHHHHhcCCcchhHHHHHHHHHHhhcCHHHHHhhhhcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhh
Q 000184 1199 AGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNA 1278 (1890)
Q Consensus 1199 ag~l~~Lv~~L~~~~~~~q~~a~~~ll~~l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~ 1278 (1890)
.+.++.|+.+|.+.+++++..|+..|.. +....+++.|+..|++++..+|..|+.+|..+....
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~-----------~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----- 683 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTE-----------TTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----- 683 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhh-----------hcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----
Confidence 3468899999999988899888887762 335678999999999999999999999998874321
Q ss_pred hhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCC
Q 000184 1279 ESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGN 1358 (1890)
Q Consensus 1279 i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~ 1358 (1890)
...+.|...|.+.+..+|..|+.+|..+.. +....|++.|.+. +..++..|...|..+
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~--------------~~~~~l~~~L~D~-d~~VR~~Av~aL~~~--- 741 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRA--------------GDAALFAAALGDP-DHRVRIEAVRALVSV--- 741 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhcc--------------CCHHHHHHHhcCC-CHHHHHHHHHHHhcc---
Confidence 234688899999999999999999998763 2234567788764 778999999998764
Q ss_pred hhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhc
Q 000184 1359 TRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLG 1438 (1890)
Q Consensus 1359 ~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~ 1438 (1890)
+..+.|..++.++++.+|..++.+|..+.... ...++.|..+++++++.+|..|+.+|++++
T Consensus 742 ----------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 742 ----------DDVESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELG 803 (897)
T ss_pred ----------cCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 22355778899999999999999999996321 223688999999999999999999999998
Q ss_pred cCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHH
Q 000184 1439 KDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQV 1518 (1890)
Q Consensus 1439 ~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~a 1518 (1890)
... . .++.++..|.+++..|+..++.+|+.+... ..+++|+.+|++++ +.||+.|+++
T Consensus 804 ~~~-~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~----------~a~~~L~~~L~D~~--~~VR~~A~~a 861 (897)
T PRK13800 804 CPP-D---------DVAAATAALRASAWQVRQGAARALAGAAAD----------VAVPALVEALTDPH--LDVRKAAVLA 861 (897)
T ss_pred Ccc-h---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc----------chHHHHHHHhcCCC--HHHHHHHHHH
Confidence 763 1 346788999999889999999999765432 35899999999988 9999999999
Q ss_pred HHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHH
Q 000184 1519 LVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSH 1564 (1890)
Q Consensus 1519 L~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~ 1564 (1890)
|+.+. ......+.|..+|+++++.||..|.++|..
T Consensus 862 L~~~~-----------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 862 LTRWP-----------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HhccC-----------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 99861 244568899999999999999999999874
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.43 E-value=7.7e-10 Score=141.22 Aligned_cols=430 Identities=17% Similarity=0.160 Sum_probs=298.9
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhH
Q 000184 21 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRV 100 (1890)
Q Consensus 21 ~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~ 100 (1890)
.+...++.|... .++..++..+...........+ ..-+.+...|++.+.+....+..+|..+-......
T Consensus 4 ~~~~~l~~l~~~----~~~~~~L~~l~~~~~~~~~l~~------~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~- 72 (503)
T PF10508_consen 4 WINELLEELSSK----AERLEALPELKTELSSSPFLER------LPEPVLFDCLNTSNREQVELICDILKRLLSALSPD- 72 (503)
T ss_pred HHHHHHHHHhcc----cchHHHHHHHHHHHhhhhHHHh------chHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHH-
Confidence 345555665543 3455555555543333222222 22334788888887777777778888876433322
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHH
Q 000184 101 KVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRN 180 (1890)
Q Consensus 101 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~ 180 (1890)
....+..+.|...|.++++.+|..+++.|.++... .......+...+++|.++..+.. .+..+...+..+|.+
T Consensus 73 -~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~---~~~~~~~~~~~~l~~~i~~~L~~---~d~~Va~~A~~~L~~ 145 (503)
T PF10508_consen 73 -SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH---SEGAAQLLVDNELLPLIIQCLRD---PDLSVAKAAIKALKK 145 (503)
T ss_pred -HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CHHHHHHhcCccHHHHHHHHHcC---CcHHHHHHHHHHHHH
Confidence 22556789999999999999999999999998772 22234567789999999999866 455688899999999
Q ss_pred hccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHH
Q 000184 181 LSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAA 260 (1890)
Q Consensus 181 L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa 260 (1890)
++..+++. ..+++.+.++.|..++..+++.+|.++..++.+++...++....+.+.|.++.+++.+.+ +|.-++..+.
T Consensus 146 l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnal 223 (503)
T PF10508_consen 146 LASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNAL 223 (503)
T ss_pred HhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHH
Confidence 99766544 558888999999999999899999999999999998888788888899999999999998 6888999999
Q ss_pred HHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhh
Q 000184 261 GALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQ 340 (1890)
Q Consensus 261 ~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~ 340 (1890)
.+|..|+. .+.+...+.+.|.++.|..++.....+. ....-+.-..+...++++.-.+..+
T Consensus 224 ell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp---~~~~~~l~g~~~f~g~la~~~~~~v--------------- 284 (503)
T PF10508_consen 224 ELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP---RLSSLLLPGRMKFFGNLARVSPQEV--------------- 284 (503)
T ss_pred HHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC---cccchhhhhHHHHHHHHHhcChHHH---------------
Confidence 99999999 7888999999999999999998764211 0112222333344444433100000
Q ss_pred hhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhh-hhc-CcH----H
Q 000184 341 VADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKL-ENS-EAK----R 414 (1890)
Q Consensus 341 ~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l-~~~-g~i----~ 414 (1890)
.+. + ..+...+..++++.++. .+..|..+++.++.+.+.+..+ ... +.+ .
T Consensus 285 ----~~~-------~------------p~~~~~l~~~~~s~d~~-~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~ 340 (503)
T PF10508_consen 285 ----LEL-------Y------------PAFLERLFSMLESQDPT-IREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLK 340 (503)
T ss_pred ----HHH-------H------------HHHHHHHHHHhCCCChh-HHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHH
Confidence 000 0 12444556666666554 5899999999999998888887 332 333 3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCch-h-------hH---HHHhcCcHH-HHHHhhCCCCHHHHHHHHHHHHHccc
Q 000184 415 LLVGLITMATNEVQEELVRALLKLCNNEGS-L-------WR---ALQGREGIQ-LLISLLGLSSEQQQECSVALLCLLSN 482 (1890)
Q Consensus 415 ~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~-~-------~~---~i~~~g~i~-~Lv~lL~~~~~~v~~~A~~aL~nL~~ 482 (1890)
..-....++..++|..++.+|.++-..... . .+ .....+... .++.+++.+=+++|..+...|..|+.
T Consensus 341 ~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 341 AIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 344455577889999999999998443222 1 11 112223345 88899999999999999999999997
Q ss_pred CChhcHHHHHhcCCcHHHHHhccCCCHHHHH
Q 000184 483 ENDDSKWAITAAGGIPPLVQILESGSAKAKE 513 (1890)
Q Consensus 483 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e 513 (1890)
..+..+......|.++.|++--...+.+.++
T Consensus 421 ~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke 451 (503)
T PF10508_consen 421 QPWGQREICSSPGFIEYLLDRSTETTKEGKE 451 (503)
T ss_pred CHHHHHHHHhCccHHhhhcCCCCCCCHHHHH
Confidence 5444444444556566555443334444444
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.42 E-value=7.1e-10 Score=133.83 Aligned_cols=495 Identities=10% Similarity=0.028 Sum_probs=311.3
Q ss_pred cCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCC-HhHHHHHHHHHHHhhhcCHHHHHHHHhcCChH
Q 000184 206 TLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLSDHCKDARREIAGSNGIP 284 (1890)
Q Consensus 206 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~ 284 (1890)
-+.+++....+..-..++..++.+.+..+++.|+++.|..++...++ .+.+...+.++..+..+.......+.+++-++
T Consensus 19 ~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 19 LHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred hcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 34556666667777778888888788889999999999999987544 56677788888888887777888899999999
Q ss_pred HHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCC
Q 000184 285 AMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKP 364 (1890)
Q Consensus 285 ~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~ 364 (1890)
.|++++..++ ...+.+..++.+.++-...++.-.. +.
T Consensus 99 ~Ll~LLs~sD--------~~~~le~~l~~lR~Ifet~~~q~~~-------------~s---------------------- 135 (678)
T KOG1293|consen 99 KLLQLLSESD--------SLNVLEKTLRCLRTIFETSKYQDKK-------------MS---------------------- 135 (678)
T ss_pred HHHHHhcCcc--------hHhHHHHHHHHHHHHHhcccccccc-------------hh----------------------
Confidence 9999998764 2567788888888876422111000 00
Q ss_pred CChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHH---Hhhcc
Q 000184 365 SDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALL---KLCNN 441 (1890)
Q Consensus 365 ~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~---~L~~~ 441 (1890)
.....++..+..++... .+.+.+.-+.-..+++..++.+..+.++|....+.-++...+...|..|..+++ ++..+
T Consensus 136 ~~~~sIi~~~s~l~s~~-lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~N 214 (678)
T KOG1293|consen 136 LHLKSIIVKFSLLYSIE-LKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRN 214 (678)
T ss_pred hhHHHHHHHHHHHHhhh-hhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeec
Confidence 01123344444444411 111222233333444555666777778888888877777778899999999999 77776
Q ss_pred CchhhHH----HHhcCcHH--HHHHhhCCCCHHHHHHHHHHHHHcccCChh----cHHHHHhcCCcHH-----HHHhccC
Q 000184 442 EGSLWRA----LQGREGIQ--LLISLLGLSSEQQQECSVALLCLLSNENDD----SKWAITAAGGIPP-----LVQILES 506 (1890)
Q Consensus 442 ~~~~~~~----i~~~g~i~--~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~----~~~~i~~~g~i~~-----Lv~lL~~ 506 (1890)
++..... ..+.|..+ .+-+++++++...+..++.+|.++...+.+ -++.+.-..+-.. .+.++..
T Consensus 215 n~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~ 294 (678)
T KOG1293|consen 215 NPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMND 294 (678)
T ss_pred CchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecC
Confidence 6554332 23344444 566688888888888888888887654311 1222211111111 1222223
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcc
Q 000184 507 GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPE 586 (1890)
Q Consensus 507 ~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~ 586 (1890)
+--..-..++...+.++..-...+....+...++.+++++..+. +.++....++.- ++.+. .
T Consensus 295 P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~----sl~a~~~~~~~i------------~l~e~--~ 356 (678)
T KOG1293|consen 295 PGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICA----SLAASDEKYRLI------------LLNET--L 356 (678)
T ss_pred CceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHH----HHhhcchhhhHH------------Hhhhh--h
Confidence 31111223344444444322345555556667777777775421 111100000000 00000 0
Q ss_pred hHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHh
Q 000184 587 SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKL 666 (1890)
Q Consensus 587 ~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~l 666 (1890)
+... ++.-.. ...+..+-..-....+..+....+.....+|+.++.++++.-...+..+....+..||+.+
T Consensus 357 i~~~-------~~~~~~--i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvql 427 (678)
T KOG1293|consen 357 ILNH-------LEYGLE--ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQL 427 (678)
T ss_pred hhhh-------hhhhcc--hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 0000 000000 0011111111112233334455678888899999999988766665556677889999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc--hHHHHHHhcCcH
Q 000184 667 LDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS--EVSEKAIAEEII 744 (1890)
Q Consensus 667 L~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~--~~~~~~~~~~~v 744 (1890)
+..++..+...+.++++|++-.-. .-+..++..|+++.+.+++.+++..++..+.|+|.+++.+. ....+....-.-
T Consensus 428 l~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a 506 (678)
T KOG1293|consen 428 LMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPA 506 (678)
T ss_pred hhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhH
Confidence 999999999999999999987765 45556899999999999999999999999999999998444 444444444445
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 000184 745 LPATRVLCEGTISGKTLAAAAIARLLHS 772 (1890)
Q Consensus 745 ~~L~~ll~~~~~~~~~~aa~aL~~L~~~ 772 (1890)
..+..+..+++..+++++...|.|+...
T Consensus 507 ~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 507 NLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 5566777777888999999999999864
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.6e-10 Score=132.41 Aligned_cols=377 Identities=15% Similarity=0.084 Sum_probs=295.2
Q ss_pred HHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccC
Q 000184 1302 AAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTE 1381 (1890)
Q Consensus 1302 ~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~ 1381 (1890)
.|...|.|++++-....++ ++..+|..|++.|..+ +-++.......|..|+-..++...+...+.++.|++++...
T Consensus 282 va~ylLlNlAed~~~ElKM---rrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 282 VAVYLLLNLAEDISVELKM---RRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHhhhhhHHHHH---HHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 4889999999866655555 5778999999999875 45788888899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHh
Q 000184 1382 FSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDIL 1461 (1890)
Q Consensus 1382 ~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL 1461 (1890)
+++.+......|.++++|...+..++..|.++.|..++.+.+.. .-|...|..++.+. ..+..+....||+.+.+.+
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999866543 45778889999884 8899999999999999888
Q ss_pred ccCCh-hHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhh-ccCCChhhHHHHHHHHHHhhcCCCcccccccccCCc
Q 000184 1462 HEAPD-FLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT-RSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQA 1539 (1890)
Q Consensus 1462 ~~~~~-~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~-~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~ 1539 (1890)
-...+ .+-.....+|-||+-+.++.+...+..++..|+..-- ..| +.. ...+.|+++++...... .-+.
T Consensus 435 ~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D--~lL----mK~vRniSqHeg~tqn~---Fidy 505 (791)
T KOG1222|consen 435 LSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRD--LLL----MKVVRNISQHEGATQNM---FIDY 505 (791)
T ss_pred HhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccc--hHH----HHHHHHhhhccchHHHH---HHHH
Confidence 65443 3444555678889988888888888888888877643 323 322 35777887776644442 2345
Q ss_pred hhhhhhccC-CCCHHHHHHHHHHHHHhhc-ccccccchhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhccChhH--
Q 000184 1540 IEPLIPLLD-SPAPAVQQLAAELLSHLLL-EEQLQKDPVTQQVIGPLIRVLGS--GIHILQQRAVKALVSIALTWPNE-- 1613 (1890)
Q Consensus 1540 i~~Lv~lL~-s~~~~vq~~A~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~lL~s--~~~~v~~~A~~aL~~l~~~~~~~-- 1613 (1890)
|.-|...++ +++...-..+.++|+++.. +-+|...+.+.+.++.+..-|.. ...++....+.+++..+.+...+
T Consensus 506 vgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~L 585 (791)
T KOG1222|consen 506 VGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARL 585 (791)
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHH
Confidence 677777776 5556667777788888876 56788888899999999998854 44568888888999998776664
Q ss_pred HHhhcChHHHHHHHhh--cCCCCcHHHHHHHHHHHHhhhhh--chhhhccc--chHHHHHhhccCChhHHHHHHHHHHHh
Q 000184 1614 IAKEGGVTELSKIILQ--ADPSLPHALWESAASVLSSILQF--SSEFYLEV--PVAVLVRLLRSGSEGTVIGSLNALLVL 1687 (1890)
Q Consensus 1614 l~~~g~I~~Ll~~l~~--~~~~~~~~~~~~a~~~l~~~~~~--~~~~~~~~--~v~~Lv~ll~~~~~~v~~~a~~aL~~L 1687 (1890)
+...|.|+.+++++.. .|+ .+....+.++..+.+. ++.++.++ .-..|++++++.+.++|..+-.+|-.+
T Consensus 586 la~a~~i~tlieLL~a~QeDD----EfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIi 661 (791)
T KOG1222|consen 586 LAPAKLIDTLIELLQACQEDD----EFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDII 661 (791)
T ss_pred hCccccHHHHHHHHHhhcccc----hHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7778899999998876 333 3333477777666644 33466553 678999999999999999999999999
Q ss_pred hcCChhhHHHH
Q 000184 1688 ESDDGTSAEAM 1698 (1890)
Q Consensus 1688 ~~~~~~~~~~i 1698 (1890)
+..+..-+..+
T Consensus 662 ae~d~EWAKrI 672 (791)
T KOG1222|consen 662 AEHDKEWAKRI 672 (791)
T ss_pred HHhhHHHHHHH
Confidence 88776544333
No 29
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.37 E-value=1.5e-09 Score=138.70 Aligned_cols=369 Identities=16% Similarity=0.126 Sum_probs=272.5
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh
Q 000184 372 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 451 (1890)
Q Consensus 372 ~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~ 451 (1890)
+++...+...+.+. -..++..|..+......... ..+..+.+...|.++++.+|..+++.+.++..++......+.+
T Consensus 41 ~~lf~~L~~~~~e~-v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQ-VELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHH-HHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 34666666555544 35566777777554433332 4567788999999999999999999999998876666677788
Q ss_pred cCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHH
Q 000184 452 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 531 (1890)
Q Consensus 452 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~ 531 (1890)
.+.++.++.++.+++..+...|+.+|.+++. ++...+.+.+.+.+..|.+++..+++.+|-++..++.+++..+++...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 8999999999999999999999999999996 667777888999999999999998999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-------CCcHHHHHHHHhcCCcchH------HHHHHHHHHH
Q 000184 532 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-------TATISQLTALLTSDLPESK------VYVLDALKSM 598 (1890)
Q Consensus 532 ~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~-------~~~i~~L~~lL~~~~~~~~------~~a~~aL~~L 598 (1890)
.+.+.|.++.++..+++.+.-++.++...|..|+.++. .+.++.+..++.+...+.+ ...+...+++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l 276 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL 276 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH
Confidence 99999999999999999888899999999999998544 3778888888865433321 1122334444
Q ss_pred hhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHH-cCchHHHHH----hhcCCCHH
Q 000184 599 LSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-VKTLWSVMK----LLDVGSEC 673 (1890)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~-~g~i~~Lv~----lL~~~~~~ 673 (1890)
+.. ....... .. ...+..+.+++.+.++..+..|..+++.++...+........ .+.++..++ ...++..+
T Consensus 277 a~~-~~~~v~~-~~--p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 277 ARV-SPQEVLE-LY--PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred Hhc-ChHHHHH-HH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 443 2222111 10 122344556667889999999999999999775443322122 234444444 44677788
Q ss_pred HHHHHHHHHHHHHccCch--hhHH--------HHHhCCChH-HHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHh-c
Q 000184 674 ILVEASRCLAAIFLSVRE--NREV--------AAVARDALS-PLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIA-E 741 (1890)
Q Consensus 674 v~~~a~~aL~~L~~~~~~--~~~~--------~~~~~~~v~-~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~-~ 741 (1890)
++..+..++.++....++ ..+. .....+... .++.+++.|=+|+|..+-..|..|+..+-....+.. .
T Consensus 353 lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~ 432 (503)
T PF10508_consen 353 LKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSP 432 (503)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCc
Confidence 999999999999654443 1111 123444555 778899999899999999999999988877777663 4
Q ss_pred CcHHHHH
Q 000184 742 EIILPAT 748 (1890)
Q Consensus 742 ~~v~~L~ 748 (1890)
+.++.++
T Consensus 433 gfie~ll 439 (503)
T PF10508_consen 433 GFIEYLL 439 (503)
T ss_pred cHHhhhc
Confidence 5554443
No 30
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.35 E-value=1.3e-06 Score=108.93 Aligned_cols=510 Identities=15% Similarity=0.120 Sum_probs=283.3
Q ss_pred hcCChhHHHHHHHHHHHhhccchhhhhhh-hcCChHHHHHHhccCChHHHHHHHHHHHHHhccC--chhhHHHHhhhCCh
Q 000184 1252 RLGGRGARYSAAKALESLFSADHIRNAES-ARQAVQPLVEILNTGLEREQHAAIAALVRLLSEN--PSRALAVADVEMNA 1328 (1890)
Q Consensus 1252 ~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~-~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~--~~~~~~~~~v~~g~ 1328 (1890)
|-++.-.|..|++|+.-++...-.-+... -...++.|...++.....-|.+.+.++..|...- ....... .-+
T Consensus 619 Rl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~----e~v 694 (1233)
T KOG1824|consen 619 RLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL----EAV 694 (1233)
T ss_pred HHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH----HHH
Confidence 34566789999999999987443222222 2446788999998877777777777776666521 1111110 124
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-----CCchHH
Q 000184 1329 VDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-----DDEQLA 1403 (1890)
Q Consensus 1329 v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-----~~~~~~ 1403 (1890)
+..+..+++. ++..+.+.+..+|..++.......-......++.++.+++++ -.+-.|..++..++ ..+.
T Consensus 695 L~el~~Lise-sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~-- 769 (1233)
T KOG1824|consen 695 LVELPPLISE-SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP--LLQGGALSALLLFFQALVITKEP-- 769 (1233)
T ss_pred HHHhhhhhhH-HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCC--
Confidence 4555566655 467888999999999887766555556677889999999875 34444544444443 1111
Q ss_pred HHHHHcCChHHHHHhhcCCcH-----hHHHHHHHHHHHhc----cCChhhHHHHHHcCcHHHHHHHhccCC--hhHHHHH
Q 000184 1404 ELVAAHGAVIPLVGLLYGRNY-----MLHEAISRALVKLG----KDRPSCKLEMVKAGVIESVLDILHEAP--DFLCSAF 1472 (1890)
Q Consensus 1404 ~~~~~~gav~~L~~lL~~~~~-----~vr~~A~~aL~~l~----~~~~~~~~~l~~~~~i~~L~~lL~~~~--~~v~~~a 1472 (1890)
..+ +..|..+++.+-+ .+.+.|.+.++++. ..-|+. .......|+.-+.++. +.++..+
T Consensus 770 ----~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa 839 (1233)
T KOG1824|consen 770 ----DLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-----SKSLATKLIQDLQSPKSSDSIKVFA 839 (1233)
T ss_pred ----Ccc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHHhCCCCchhHHHHH
Confidence 112 4566666664332 23445544443322 111100 0112334444444322 2233222
Q ss_pred HHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCH
Q 000184 1473 AELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAP 1552 (1890)
Q Consensus 1473 a~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~ 1552 (1890)
-- .|+..+.........+.-..++..+.+|. .|++..|..||++++-. ..+..+|.+.....+. |
T Consensus 840 ~L---slGElgr~~~~s~~~e~~~~iieaf~sp~--edvksAAs~ALGsl~vg---------nl~~yLpfil~qi~sq-p 904 (1233)
T KOG1824|consen 840 LL---SLGELGRRKDLSPQNELKDTIIEAFNSPS--EDVKSAASYALGSLAVG---------NLPKYLPFILEQIESQ-P 904 (1233)
T ss_pred Hh---hhhhhccCCCCCcchhhHHHHHHHcCCCh--HHHHHHHHHHhhhhhcC---------chHhHHHHHHHHHhcc-h
Confidence 22 24444333222334445557778888888 88998888999988321 2234456666655432 3
Q ss_pred HHHHHHHHHHHHhhcccccccchhc--cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhc
Q 000184 1553 AVQQLAAELLSHLLLEEQLQKDPVT--QQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA 1630 (1890)
Q Consensus 1553 ~vq~~A~~aL~~l~~~~~~~~~l~~--~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~ 1630 (1890)
.=|..-+..|-........- .+.. ....+.|.+-.+......|--.+.||+++....|..+ ++.|...+.++
T Consensus 905 k~QyLLLhSlkevi~~~svd-~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesL-----lpkL~~~~~S~ 978 (1233)
T KOG1824|consen 905 KRQYLLLHSLKEVIVSASVD-GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESL-----LPKLKLLLRSE 978 (1233)
T ss_pred HhHHHHHHHHHHHHHHhccc-hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHH-----HHHHHHHhcCC
Confidence 33443333333222211100 0000 1122444444455555668888999999987665443 47777788877
Q ss_pred CCCCcHHHHHHHHHHHHhhhhhchh-----hhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHH
Q 000184 1631 DPSLPHALWESAASVLSSILQFSSE-----FYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIE 1705 (1890)
Q Consensus 1631 ~~~~~~~~~~~a~~~l~~~~~~~~~-----~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~ 1705 (1890)
++..|..... +..-. .+++ .+.+.-+..++.+++++|..||+.|..++....++-|+-.. +...
T Consensus 979 a~~~rs~vvs----avKfs--isd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIr-----Dllp 1047 (1233)
T KOG1824|consen 979 ASNTRSSVVS----AVKFS--ISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIR-----DLLP 1047 (1233)
T ss_pred Ccchhhhhhh----eeeee--ecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHH-----HHHH
Confidence 7644433222 11110 0111 22223466788899999999999999999988876444322 3445
Q ss_pred HHHHHHccCCcHHHHHHHHHHHhhchhhhhhhhccccccccccccCChHHHHHHHHHHHHHhcchhhhhhhhhhcccccc
Q 000184 1706 ALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVS 1785 (1890)
Q Consensus 1706 ~Li~lL~~~~~~~~a~~al~~L~~~~~~r~~i~~~~~i~~L~~~~~~~~~~~~~~~~la~l~~~~~~~~~~l~~~~~~~~ 1785 (1890)
.|+..|.+ +-++|.+.+..-=+.|+.+...|+.-..+ ++.-+.+.+-++.... +- --.
T Consensus 1048 eLLp~Ly~----------------eTkvrkelIreVeMGPFKH~VDdgLd~RK-aaFEcmytLLdscld~-~d----it~ 1105 (1233)
T KOG1824|consen 1048 ELLPLLYS----------------ETKVRKELIREVEMGPFKHTVDDGLDLRK-AAFECMYTLLDSCLDR-LD----ITE 1105 (1233)
T ss_pred HHHHHHHH----------------hhhhhHhhhhhhcccCccccccchHHHHH-HHHHHHHHHHHhhhhh-cc----HHH
Confidence 55555554 45677777776667788776666655443 3333333333322111 10 012
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHHHHh
Q 000184 1786 ACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLI 1837 (1890)
Q Consensus 1786 ~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~~ll 1837 (1890)
++.....=|+++ +++|...--.|..++ .-.+.+..-.=+..++.|-...
T Consensus 1106 Fl~~~~~GL~Dh--ydiKmlt~l~l~rLa-~lcPs~VlqrlD~l~EpLr~t~ 1154 (1233)
T KOG1824|consen 1106 FLNHVEDGLEDH--YDIKMLTFLMLARLA-DLCPSAVLQRLDRLVEPLRKTC 1154 (1233)
T ss_pred HHHHHHhhcchh--hHHHHHHHHHHHHHH-hhCcHHHHHHHHHHHHHHHHHh
Confidence 344444445563 899999988888888 5555555544445555555444
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.27 E-value=8.7e-09 Score=135.64 Aligned_cols=496 Identities=16% Similarity=0.167 Sum_probs=339.1
Q ss_pred CChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHH
Q 000184 34 SSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLG 113 (1890)
Q Consensus 34 ~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~ 113 (1890)
.+..+|..++..|..+.-.+.+. +.+++.+++++.+.+...|.-+=-++..+..++..-.. + ++..+.+
T Consensus 18 ~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~-l---~~n~l~k 86 (526)
T PF01602_consen 18 IDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLI-L---IINSLQK 86 (526)
T ss_dssp THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHH-H---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHH-H---HHHHHHH
Confidence 45678899999999988876432 36778899999999999988887778877754443111 1 5778888
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHH
Q 000184 114 LLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATV 193 (1890)
Q Consensus 114 lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~ 193 (1890)
-|.++++..+..|.++|.++.. ++ +. +-++|.+.+.+.+ ..+.++..|+.++..+....++. +.
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~~---~~------~~-~~l~~~v~~ll~~---~~~~VRk~A~~~l~~i~~~~p~~---~~ 150 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIRT---PE------MA-EPLIPDVIKLLSD---PSPYVRKKAALALLKIYRKDPDL---VE 150 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH-S---HH------HH-HHHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHCHCC---HH
T ss_pred hhcCCCHHHHHHHHhhhhhhcc---cc------hh-hHHHHHHHHHhcC---CchHHHHHHHHHHHHHhccCHHH---HH
Confidence 8999999999989888888776 11 11 2356677777765 56789999999999887554433 22
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHH
Q 000184 194 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 273 (1890)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~ 273 (1890)
.. .++.+.++|.++++.++..|+.++..+ ...++... -.-...+..|.+++.. .++-.+......|..+....+..
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSD-PDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccc-cchHHHHHHHHHHHhcccCChhh
Confidence 22 589999999999999999999999777 22221111 1112334445555545 46778999999999988866554
Q ss_pred HHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHH
Q 000184 274 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 353 (1890)
Q Consensus 274 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~ 353 (1890)
... ...++.+..++.+. +..++..++.++..+..... . +
T Consensus 227 ~~~---~~~i~~l~~~l~s~---------~~~V~~e~~~~i~~l~~~~~------------------~------~----- 265 (526)
T PF01602_consen 227 ADK---NRIIEPLLNLLQSS---------SPSVVYEAIRLIIKLSPSPE------------------L------L----- 265 (526)
T ss_dssp HHH---HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHSSSHH------------------H------H-----
T ss_pred hhH---HHHHHHHHHHhhcc---------ccHHHHHHHHHHHHhhcchH------------------H------H-----
Confidence 421 34566777777532 47788888888887654110 0 0
Q ss_pred HhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc-CCCHHHHHHHH
Q 000184 354 IYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELV 432 (1890)
Q Consensus 354 ~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~ 432 (1890)
..+.+.|.+++.+. +..+|.-++..|..+.... ...+. .....+..+. +.+..++..++
T Consensus 266 --------------~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 266 --------------QKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp --------------HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHH
T ss_pred --------------HhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHH
Confidence 13456677888744 4446999999999886544 12222 1222233444 88999999999
Q ss_pred HHHHHhhccCchhhHHHHhcCcHHHHHHhh-CCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHH
Q 000184 433 RALLKLCNNEGSLWRALQGREGIQLLISLL-GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 511 (1890)
Q Consensus 433 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 511 (1890)
..|.+++.. .+... .++.|...+ ..++.+.+..++..++.++...+..... .++.+++++..+++.+
T Consensus 326 ~lL~~l~~~--~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~~ 393 (526)
T PF01602_consen 326 DLLYKLANE--SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDYV 393 (526)
T ss_dssp HHHHHH--H--HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGGC
T ss_pred HHHhhcccc--cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhccccc
Confidence 999999874 33332 467788888 4558889999999999998644433333 5688999999887788
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCC-----CcHHHHHHHHhcCCc
Q 000184 512 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDT-----ATISQLTALLTSDLP 585 (1890)
Q Consensus 512 ~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~~-----~~i~~L~~lL~~~~~ 585 (1890)
...+...+.++...+++.+.. .+..|++.+.+ .++..+..++|+++..+...+. ..+..+.......++
T Consensus 394 ~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~ 468 (526)
T PF01602_consen 394 SNEIINVIRDLLSNNPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESP 468 (526)
T ss_dssp HCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHH
T ss_pred cchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccH
Confidence 888888899888766666644 47888988887 6778999999999998776543 222334444555667
Q ss_pred chHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhc--CCCHHHHHHHHHHHHHHh
Q 000184 586 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS--STKEETQAKSASALAGIF 644 (1890)
Q Consensus 586 ~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~--s~~~~~~~~A~~aL~~L~ 644 (1890)
.++.....++..+....+..+... ..++.+..+.. +.++++|..|...+.-+.
T Consensus 469 ~vk~~ilt~~~Kl~~~~~~~~~~~------~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 469 EVKLQILTALAKLFKRNPENEVQN------EILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTHHH------HHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCchhhHH------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 788888888887776555433211 22566667777 789999999998766543
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.27 E-value=2.4e-10 Score=130.30 Aligned_cols=227 Identities=19% Similarity=0.198 Sum_probs=177.1
Q ss_pred HHhcCcHHHHHHhhCC-CCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCCh
Q 000184 449 LQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE 527 (1890)
Q Consensus 449 i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~ 527 (1890)
+.+.+.++.|+.+|+. .++.+++.+..+++|.+ ..+.++..+.+.|+++.+..++.++++.+|+.|.++|.|++. +.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-ND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-Ch
Confidence 4567789999999995 68999999999999998 589999999999999999999999999999999999999998 47
Q ss_pred HHHHHHHhCCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCch
Q 000184 528 DIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFS 605 (1890)
Q Consensus 528 ~~r~~i~~~g~i~~Lv~ll~~~--~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~ 605 (1890)
+++..|.. .++.+++...+. +..++..+.++|.||+...+.
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~----------------------------------- 128 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY----------------------------------- 128 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-----------------------------------
Confidence 78877754 477777765553 456777777888887653321
Q ss_pred HHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCC-CHHHHHHHHHHHHH
Q 000184 606 DILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG-SECILVEASRCLAA 684 (1890)
Q Consensus 606 ~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~ 684 (1890)
+..+ .+.++.++.+|.+++..+|..+.++|.+|+.+ +++...+..+++++.++.++..+ +.++...++..+.|
T Consensus 129 ---~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 129 ---HHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFEN 202 (254)
T ss_pred ---hhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHH
Confidence 1222 23589999999999999999999999999997 55556678889999999999654 67889999999999
Q ss_pred HHccCchhhH-------------HHHHhCC-ChHHHHHHhCCCCHHHHHH
Q 000184 685 IFLSVRENRE-------------VAAVARD-ALSPLVVLAGSPVLEVAEQ 720 (1890)
Q Consensus 685 L~~~~~~~~~-------------~~~~~~~-~v~~Lv~ll~~~~~ev~~~ 720 (1890)
|..+-+.... ..+.+.+ ..+.|..+..++++|||++
T Consensus 203 i~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 203 INENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred HHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 9655433211 1122222 4556666777777777765
No 33
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.26 E-value=2.6e-09 Score=129.14 Aligned_cols=507 Identities=14% Similarity=0.076 Sum_probs=294.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHH
Q 000184 114 LLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATV 193 (1890)
Q Consensus 114 lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~ 193 (1890)
.|-+.+++....+..-..|+..|.. +.. ..+++.|++|.|..++...+.. +..+......+..+....+.....+.
T Consensus 17 ~L~~~dpe~lvrai~~~kN~vig~~-~~K--~~~ik~GAv~~Ll~L~s~e~~s-~~~k~~~~~llns~f~~eqd~v~svL 92 (678)
T KOG1293|consen 17 RLLHLDPEQLVRAIYMSKNLVIGFT-DNK--ETNIKLGAVELLLALLSLEDGS-TELKNGFAVLLNSLFLGEQDKVDSVL 92 (678)
T ss_pred hhhcCCHHHHHHHHHHhcchhhcCC-Ccc--chhhhhcchHHHHhhccccCCc-hhhhhhHHHHHHhHHhhccchHHHHH
Confidence 3445677776666666777776432 322 2488999999999998775433 33444455567777777777788899
Q ss_pred hcCCHHHHHHhhcCCC-HHHHHHHHHHHHHHhhcCc--hhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcC
Q 000184 194 QAGGIDILVKLLTLGQ-SSTQAHVCFLLACMMEEDV--SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 270 (1890)
Q Consensus 194 ~~g~v~~Lv~lL~~~~-~~v~~~a~~~L~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~ 270 (1890)
+.+-++.|.++|.+++ ..+++...++++.+....+ +..........++.+.-++.... ......-+....+++. .
T Consensus 93 ~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~l-k~~~~l~~~~~a~~s~-~ 170 (678)
T KOG1293|consen 93 RIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIEL-KYISRLDVSRAAHLSS-T 170 (678)
T ss_pred HHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhh-hhhhhhhhhhhccccc-c
Confidence 9999999999999999 8899999999988875543 22223333344444444444222 2344444455555665 4
Q ss_pred HHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHH---hhCCCchhhhhhhccccCCCChhhhhhhHhH
Q 000184 271 KDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALAN---ISGGLSNVISSLGQSLESCSSPAQVADTLGA 347 (1890)
Q Consensus 271 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~n---l~~~~~~~i~~l~~~~~~~~~~~~~~~~~ga 347 (1890)
++++.....+|....+.-++... ...++..|+..+.+ +...+ +. |.
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~~---------s~~~RlaaL~~~sr~~~iL~Nn-------------~~---------~s 219 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMYL---------SSKLRLAALLCLSRGDRILRNN-------------PL---------GS 219 (678)
T ss_pred chhhheeccccchhhHHHHHHhh---------hHHHHHHHHHHhhccceeeecC-------------ch---------hH
Confidence 56777778888777766555332 25566666666653 22111 10 10
Q ss_pred HHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHH--HHHHHhcCCCH
Q 000184 348 LASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKR--LLVGLITMATN 425 (1890)
Q Consensus 348 l~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~--~Lv~lL~~~~~ 425 (1890)
+. ++ ..+...|..+ .+-.++++++.
T Consensus 220 m~------------------------~l-----------------------------~~L~d~~v~~r~~v~rL~k~~~~ 246 (678)
T KOG1293|consen 220 MF------------------------LL-----------------------------GLLKDKGVNIRCVVTRLLKDPDF 246 (678)
T ss_pred HH------------------------HH-----------------------------HHHhccccchhhhhhhhhhCCCc
Confidence 00 00 0111122222 23356677788
Q ss_pred HHHHHHHHHHHHhhccCchh-----hHHHHhcCc--H--HHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCC
Q 000184 426 EVQEELVRALLKLCNNEGSL-----WRALQGREG--I--QLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGG 496 (1890)
Q Consensus 426 ~v~~~a~~aL~~L~~~~~~~-----~~~i~~~g~--i--~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~ 496 (1890)
..+..++.++.+++..+.++ +....+.|- + -..+.++..+-......++...+-++......+....+...
T Consensus 247 s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~ 326 (678)
T KOG1293|consen 247 SERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEAT 326 (678)
T ss_pred cHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhh
Confidence 88888888988887654221 222233331 1 11222222332222222333333333222344455555666
Q ss_pred cHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcC--ChhHHHHHHHHHHHHhcCCCCCcHH
Q 000184 497 IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLIHKSDTATIS 574 (1890)
Q Consensus 497 i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~--~~~~~~~Aa~aL~~L~~~~~~~~i~ 574 (1890)
++..++++.... .+....+++|..+.....++.-..-...- .....+.+.....+.
T Consensus 327 ~~~~~ellf~~~------------sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~---------- 384 (678)
T KOG1293|consen 327 LKTTTELLFICA------------SLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMC---------- 384 (678)
T ss_pred hhhHHHHHHHHH------------HHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcc----------
Confidence 777777664321 11111122222222221111110000000 000111111111000
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHH
Q 000184 575 QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESS 654 (1890)
Q Consensus 575 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~ 654 (1890)
+....+.+....++.++.++... -..++.+....++..+|++++..++-.++..+..+|+|+.....+.+..+
T Consensus 385 ----~~~~kd~~~~aaa~l~~~s~srs---V~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskf 457 (678)
T KOG1293|consen 385 ----LPPIKDHDFVAAALLCLKSFSRS---VSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKF 457 (678)
T ss_pred ----ccccccHHHHHHHHHHHHHHHHH---HHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHH
Confidence 00011112222233333322211 11234456678889999999999999999999999999999988889999
Q ss_pred HHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchH
Q 000184 655 IAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEV 734 (1890)
Q Consensus 655 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~ 734 (1890)
.+.|+|..+...+.+.++.++..+.++|+++.-...+..+......=....+..+..+++++|++++...|.|+.+++..
T Consensus 458 l~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~ 537 (678)
T KOG1293|consen 458 LRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRK 537 (678)
T ss_pred HHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHH
Confidence 99999999999999999999999999999998776544443344444455666888999999999999999999988665
Q ss_pred HHHHH
Q 000184 735 SEKAI 739 (1890)
Q Consensus 735 ~~~~~ 739 (1890)
...++
T Consensus 538 svdfl 542 (678)
T KOG1293|consen 538 SVDFL 542 (678)
T ss_pred HHHHH
Confidence 44443
No 34
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.4e-08 Score=116.80 Aligned_cols=413 Identities=14% Similarity=0.126 Sum_probs=273.6
Q ss_pred CCCChhh--HHHHHHHHHHHHccCCC-hhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHH
Q 000184 12 MEDPDGT--LASVAQCIEQLRQSSSS-VQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATV 88 (1890)
Q Consensus 12 ~~~~~~~--~~~v~~~~~~l~~~~~~-~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~ 88 (1890)
.++|.+. ..++.+...+++..-.. .+--..|+-.|+++++.-..-.+. .. ...|..||+.|.-.+.+...-....
T Consensus 250 de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKM-rr-kniV~mLVKaLdr~n~~Ll~lv~~F 327 (791)
T KOG1222|consen 250 DEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKM-RR-KNIVAMLVKALDRSNSSLLTLVIKF 327 (791)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HH-HhHHHHHHHHHcccchHHHHHHHHH
Confidence 3556433 55677777777663211 122256777888888876522221 11 3778899999998888888888999
Q ss_pred HHHhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCc
Q 000184 89 LGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGN 168 (1890)
Q Consensus 89 L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~ 168 (1890)
|-.|+--.+++..+...|.++.|++++.+..++.+.+....|.|+|. |...+..|+..|.+|.|..++.+.+..
T Consensus 328 LkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF----D~glr~KMv~~GllP~l~~ll~~d~~~-- 401 (791)
T KOG1222|consen 328 LKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF----DSGLRPKMVNGGLLPHLASLLDSDTKH-- 401 (791)
T ss_pred HHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc----cccccHHHhhccchHHHHHHhCCcccc--
Confidence 99998777888889999999999999999999999999999999999 566667799999999999999875543
Q ss_pred hHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCC-CHHHHH-HHHHHHHHHhhcCchhhhHhhccchHHHHHHH
Q 000184 169 VVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG-QSSTQA-HVCFLLACMMEEDVSVCSRVLAADATKQLLKL 246 (1890)
Q Consensus 169 ~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~v~~-~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~l 246 (1890)
+.+...|..++.++ ..+....-..+|+.+.+.+-++ +.++-. -.+.|+ |++.... +.+.+.+..++..|++.
T Consensus 402 ---~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ci-Nl~lnkR-NaQlvceGqgL~~LM~r 475 (791)
T KOG1222|consen 402 ---GIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCI-NLCLNKR-NAQLVCEGQGLDLLMER 475 (791)
T ss_pred ---hhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHH-HHHhccc-cceEEecCcchHHHHHH
Confidence 34566788887655 3444345567889888866553 333322 222333 5654433 56677777788888876
Q ss_pred HcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCC-chhh
Q 000184 247 LGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL-SNVI 325 (1890)
Q Consensus 247 L~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~-~~~i 325 (1890)
--...|. .-...++|++.+....+..+++- +..|...+...+ +..+.-.|+++|+|+.... ++
T Consensus 476 a~k~~D~----lLmK~vRniSqHeg~tqn~Fidy--vgdLa~i~~nd~--------~E~F~~EClGtlanL~v~dldw-- 539 (791)
T KOG1222|consen 476 AIKSRDL----LLMKVVRNISQHEGATQNMFIDY--VGDLAGIAKNDN--------SESFGLECLGTLANLKVTDLDW-- 539 (791)
T ss_pred Hhcccch----HHHHHHHHhhhccchHHHHHHHH--HHHHHHHhhcCc--------hHHHHHHHHHHHhhcccCCCCH--
Confidence 5444453 23467899998765556666552 334444444432 3456667777887765411 00
Q ss_pred hhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccch
Q 000184 326 SSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSI 405 (1890)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 405 (1890)
..
T Consensus 540 ------------------------------------------------------------------------------~~ 541 (791)
T KOG1222|consen 540 ------------------------------------------------------------------------------AK 541 (791)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 01
Q ss_pred hhhhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCC--CHHHHHHHHHHHHHcc
Q 000184 406 KLENSEAKRLLVGLITMA--TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS--SEQQQECSVALLCLLS 481 (1890)
Q Consensus 406 ~l~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~ 481 (1890)
.+.+...+|.+-..|..+ ..+.+...+-++.-++.+ ......+..+|.|+.|+++|+.. +.+.......+...+.
T Consensus 542 ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l 620 (791)
T KOG1222|consen 542 ILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFL 620 (791)
T ss_pred HHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 111122233333333211 123333444444444443 23344556778999999999864 6666677777777777
Q ss_pred cCChhcHHHHH-hcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 000184 482 NENDDSKWAIT-AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVE 534 (1890)
Q Consensus 482 ~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~ 534 (1890)
.+ ...++.++ +...-..|+.++.+.+.++|+-|=.+|--++.++.+..+.|.
T Consensus 621 ~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~ 673 (791)
T KOG1222|consen 621 KH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIA 673 (791)
T ss_pred HH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 53 55555555 455666899999999999999999999999988777776664
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.22 E-value=2.5e-09 Score=140.75 Aligned_cols=501 Identities=19% Similarity=0.195 Sum_probs=318.3
Q ss_pred HHHHHHhcC--ChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHh
Q 000184 1246 QLVAVLRLG--GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVAD 1323 (1890)
Q Consensus 1246 ~Lv~lL~~~--~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~ 1323 (1890)
.+.+++.+. +...|..+..-|..+...+.. -..+.+.+++++.+.+...|.-+-.++..+...++....+
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l--- 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLGYD-----ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL--- 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCC-----CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH---
Confidence 344555555 455555554444333222211 1257899999999988999999988888888755442222
Q ss_pred hhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchH
Q 000184 1324 VEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQL 1402 (1890)
Q Consensus 1324 v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~ 1402 (1890)
++..+.+=|.+ +++.++..|.++++.+. +++.. ...++.+..++.++++.+|..|+.++.++. .+++.
T Consensus 80 ----~~n~l~kdl~~-~n~~~~~lAL~~l~~i~-~~~~~-----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~ 148 (526)
T PF01602_consen 80 ----IINSLQKDLNS-PNPYIRGLALRTLSNIR-TPEMA-----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL 148 (526)
T ss_dssp ----HHHHHHHHHCS-SSHHHHHHHHHHHHHH--SHHHH-----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC
T ss_pred ----HHHHHHHhhcC-CCHHHHHHHHhhhhhhc-ccchh-----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH
Confidence 56677777766 47789999999999975 33332 335677888999999999999999999998 55554
Q ss_pred HHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHH----hccCChhHHHHHHHHHHH
Q 000184 1403 AELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDI----LHEAPDFLCSAFAELLRI 1478 (1890)
Q Consensus 1403 ~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~l----L~~~~~~v~~~aa~~l~~ 1478 (1890)
... . .++.+..++.+.++.++.+|+.++..+ ..++.... ..++.+++. +...++..+.....++..
T Consensus 149 ~~~---~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 149 VED---E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRR 218 (526)
T ss_dssp HHG---G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTT
T ss_pred HHH---H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHh
Confidence 332 2 489999999999999999999999999 22222211 344444444 455555554444444432
Q ss_pred HHhcccccCCccc--cCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHH
Q 000184 1479 LTNNAGIAKGPSA--AKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQ 1556 (1890)
Q Consensus 1479 L~~~~~~~~~~~~--~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~ 1556 (1890)
++.... ... ...++.+..++.+.+ +.+...++.++.++...+. ....+++.|..+|.++++.+|.
T Consensus 219 ~~~~~~----~~~~~~~~i~~l~~~l~s~~--~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~nvr~ 285 (526)
T PF01602_consen 219 YAPMEP----EDADKNRIIEPLLNLLQSSS--PSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSDPNVRY 285 (526)
T ss_dssp STSSSH----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSSHHHHH
T ss_pred cccCCh----hhhhHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhcccchheh
Confidence 221111 112 457899999999766 9999999999998854433 2345689999999999999999
Q ss_pred HHHHHHHHhhcccccccchhccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhc-CCCC
Q 000184 1557 LAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLG-SGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA-DPSL 1634 (1890)
Q Consensus 1557 ~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~-s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~-~~~~ 1634 (1890)
.++..|..+.... ...+. .....+..+. ++++.+|..++..|.++++...-. ..++.|.+.+.+. |+.+
T Consensus 286 ~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~----~Il~eL~~~l~~~~d~~~ 356 (526)
T PF01602_consen 286 IALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVK----EILDELLKYLSELSDPDF 356 (526)
T ss_dssp HHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHHC--HHH
T ss_pred hHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccccchh----hHHHHHHHHHHhccchhh
Confidence 9999999998743 11122 2233344444 899999999999999998743211 2467888888543 5434
Q ss_pred cHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHccC
Q 000184 1635 PHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSH 1714 (1890)
Q Consensus 1635 ~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~ 1714 (1890)
+.. ++..++.++.... -..+..+..+++++..+++.+...++..+.++...++..+.. .++.|++.+.+.
T Consensus 357 ~~~----~i~~I~~la~~~~-~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~ 426 (526)
T PF01602_consen 357 RRE----LIKAIGDLAEKFP-PDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK-----ILKKLIELLEDI 426 (526)
T ss_dssp HHH----HHHHHHHHHHHHG-SSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSS
T ss_pred hhh----HHHHHHHHHhccC-chHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHh
Confidence 444 3334444331110 011226899999999988888888888899888766665543 488899999986
Q ss_pred CcHHHHHHHHHHHhhchhhhhh-hhccccccccccccCChHHHHHHHHHHHHHhcchhhhhhhhhhcccccchHHHHHHh
Q 000184 1715 QCEETAARLLEVLLNNGKIRES-KATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNV 1793 (1890)
Q Consensus 1715 ~~~~~a~~al~~L~~~~~~r~~-i~~~~~i~~L~~~~~~~~~~~~~~~~la~l~~~~~~~~~~l~~~~~~~~~~~~Lv~l 1793 (1890)
..++....+++.++.....-.. -.....+..+...+.+....++...+-++..+....+.+... ....+.+.++
T Consensus 427 ~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~-----~~i~~~~~~~ 501 (526)
T PF01602_consen 427 SSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQ-----NEILQFLLSL 501 (526)
T ss_dssp SSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH-----HHHHHHHHCH
T ss_pred hHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhH-----HHHHHHHHHH
Confidence 5777777778877773221111 011112222322223333344444444444444322211010 1234555566
Q ss_pred hc--cCCCHHHHHHHHHHHHHh
Q 000184 1794 LE--EQPTEEMKVVAICALQNL 1813 (1890)
Q Consensus 1794 L~--~~~~~~~r~~A~~aL~~l 1813 (1890)
.. + .+.++|.+|.+-+.-+
T Consensus 502 ~~~~s-~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 502 ATEDS-SDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHS--SSHHHHHHHHHHHHHH
T ss_pred hccCC-CCHHHHHHHHHHHHHH
Confidence 66 5 4999999999876544
No 36
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.1e-06 Score=105.61 Aligned_cols=775 Identities=12% Similarity=0.064 Sum_probs=386.9
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCC--HHHHHHHHHHHHH-hh-ccchh
Q 000184 23 AQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGS--LAVKIQAATVLGS-LC-KENEL 98 (1890)
Q Consensus 23 ~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~--~~~~~~aa~~L~~-L~-~~~~~ 98 (1890)
.++++...+. +.-.+..|-..|..++... . .+.+..|...|.+.. +..|.-|.-.|-+ |+ ++++.
T Consensus 4 ~~~le~tlSp--D~n~~~~Ae~~l~~~~~~n--f-------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~ 72 (859)
T KOG1241|consen 4 LELLEKTLSP--DQNVRKRAEKQLEQAQSQN--F-------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPER 72 (859)
T ss_pred HHHHHHHcCC--CcchHHHHHHHHHHHHhcc--H-------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHH
Confidence 3455554433 3346777888887777642 1 133344555555433 3556655556666 44 44433
Q ss_pred hHHHHhc----------CChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhcc-CCCC
Q 000184 99 RVKVLLG----------GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG-LKSG 167 (1890)
Q Consensus 99 ~~~i~~~----------g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~-~~~~ 167 (1890)
+...... ..=..+++-|++..+.....|+.++..++....| .+.-|-|+..|.+. ....
T Consensus 73 k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP----------~n~wp~li~~lv~nv~~~~ 142 (859)
T KOG1241|consen 73 KQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP----------QNQWPELIVTLVSNVGEEQ 142 (859)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc----------hhhCHHHHHHHHHhccccc
Confidence 3222211 1112344555555555556666777777663332 23356666555442 2222
Q ss_pred c-hHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCchhhhHhhccch-HHHH
Q 000184 168 N-VVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQAHVCFLLACMMEEDVSVCSRVLAADA-TKQL 243 (1890)
Q Consensus 168 ~-~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~-i~~L 243 (1890)
+ .++...+.+|+-+|.+-+...-.--....+..++.-.+. ++..+|..|..+|.+-..-...+...=.+... +...
T Consensus 143 ~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvv 222 (859)
T KOG1241|consen 143 ASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVV 222 (859)
T ss_pred chHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeee
Confidence 3 377788999999996643321111112345555555543 67789999999996533111111111111111 2222
Q ss_pred HHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCch
Q 000184 244 LKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSN 323 (1890)
Q Consensus 244 v~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~ 323 (1890)
++.- +.+|.+++..|..+|..+..-..+.-..-....-...-+..+.+++ .++--.++.-=.++|...-.
T Consensus 223 cEat-q~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~---------deValQaiEFWsticeEEiD 292 (859)
T KOG1241|consen 223 CEAT-QSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDN---------DEVALQAIEFWSTICEEEID 292 (859)
T ss_pred eecc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHHHHH
Confidence 3333 3467899999999998887643332111112222333344454432 34444445444444431100
Q ss_pred hhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCcc
Q 000184 324 VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLL 403 (1890)
Q Consensus 324 ~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 403 (1890)
...+.|+..+.+.. |. -...+-.+
T Consensus 293 ~~~e~~e~~d~~~~-----------------------------p~-----------------~~~fa~~a---------- 316 (859)
T KOG1241|consen 293 LAIEYGEAVDQGLP-----------------------------PS-----------------SKYFARQA---------- 316 (859)
T ss_pred HHHHHHHHhhcCCC-----------------------------ch-----------------hhHHHHHH----------
Confidence 00011100000000 00 00001111
Q ss_pred chhhhhcCcHHHHHHHhcC-------CCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHH
Q 000184 404 SIKLENSEAKRLLVGLITM-------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVAL 476 (1890)
Q Consensus 404 ~~~l~~~g~i~~Lv~lL~~-------~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 476 (1890)
-.+.+|.|+++|.. +++..-+.|..||.-.+....+ .|+. -++|.+-+-+++++..-++.|+.+
T Consensus 317 -----~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 317 -----LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVP-HVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred -----HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchh-hhHHHHHHhcCCcchhhhhHHHHH
Confidence 12455666666642 3455667777777655433211 2222 344555557778999999999999
Q ss_pred HHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHH-HhCCCHHHHHHHhhcCChhHHH
Q 000184 477 LCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV-ESADAVPALLWLLKNGSANGKE 555 (1890)
Q Consensus 477 L~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i-~~~g~i~~Lv~ll~~~~~~~~~ 555 (1890)
++.+-.+-...+..-.-.+++|.+++++.+++-.+++.++|.|+.++.+.++.+.-. .-.+.++.+++-|. ..|++-.
T Consensus 388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~ 466 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVAS 466 (859)
T ss_pred HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHH
Confidence 999886555556666677899999999999999999999999999998766543221 12344555555554 3689999
Q ss_pred HHHHHHHHHhcCCC----------C--CcHHHHHH-HHhc------CCcchHHHHHHHHHHHhhhcCchH--HHHHhhhh
Q 000184 556 IAAKTLNHLIHKSD----------T--ATISQLTA-LLTS------DLPESKVYVLDALKSMLSVVSFSD--ILREGSAA 614 (1890)
Q Consensus 556 ~Aa~aL~~L~~~~~----------~--~~i~~L~~-lL~~------~~~~~~~~a~~aL~~L~~~~~~~~--~~~~~~~~ 614 (1890)
+++|++.+|+.+.. + ...+.++. |++. .....+..+.+||+-+-...+..- .++...
T Consensus 467 N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~-- 544 (859)
T KOG1241|consen 467 NVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLT-- 544 (859)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence 99999999984221 1 11222222 2221 223456778888887765544322 111110
Q ss_pred cchHHHHHHHhc-----CC----CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcC-CCHHHHHHHHHHHHH
Q 000184 615 NDAVETMIKILS-----ST----KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAA 684 (1890)
Q Consensus 615 ~~~i~~Lv~lL~-----s~----~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~ 684 (1890)
.-....|-+.+. .. -.++|..-|.+|..+.+....-. .-...-.+..+++.+.+ .+..+...|..+++.
T Consensus 545 l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~-~~~~d~iM~lflri~~s~~s~~v~e~a~laV~t 623 (859)
T KOG1241|consen 545 LVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDI-REVSDQIMGLFLRIFESKRSAVVHEEAFLAVST 623 (859)
T ss_pred HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccc-hhHHHHHHHHHHHHHcCCccccchHHHHHHHHH
Confidence 000111111222 11 13455556666666665432211 11222345566677766 455577888888888
Q ss_pred HHccCchhhHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcc--hHHH
Q 000184 685 IFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS--GKTL 761 (1890)
Q Consensus 685 L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~-~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~--~~~~ 761 (1890)
+..+-. .+..-.-....|.|..-|+.. +-.|-..+...++.|+.--+...-....++...|+..+.++.-. ++-.
T Consensus 624 l~~~Lg--~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~ 701 (859)
T KOG1241|consen 624 LAESLG--KGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPA 701 (859)
T ss_pred HHHHHh--HhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccch
Confidence 865432 111112234556666555333 33455556666666652222222334677888888888887542 4443
Q ss_pred HHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhc--cC----------cccchHHHHHHHHHH---HhcCCCCCCCC
Q 000184 762 AAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLES--AS----------GSVATSEALDALAIL---SRSGGASGHVK 826 (1890)
Q Consensus 762 aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~--~~----------~~v~~~~al~~L~~l---~~~~~~~~~~~ 826 (1890)
...+...+.-... ..+.. +-+.+.+++....+ .+ ++.. +.++++...+ ++++....
T Consensus 702 IlS~FgDIAlaIg--~~F~~---Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LR-e~~leay~gi~qglk~~~~~~--- 772 (859)
T KOG1241|consen 702 ILSVFGDIALAIG--ADFEP---YLEMVMPLLQQASSVQTDPADDSMVDYVDELR-EGILEAYTGIIQGLKTHADVM--- 772 (859)
T ss_pred HHHHHHHHHHHHH--HhHHH---HHHHHHHHHHHHHhccCCCCcccHHHHHHHHH-HHHHHHHHHHHHHhhcccchh---
Confidence 3333333221111 11111 11333334433331 11 1122 3333333322 22322211
Q ss_pred CccceeecCCCChhhHHhHhhcCC--hhHHHHHHHHHHHHhcCCccchhhhhccCccchHHHHHHHhhcCCCceeecchh
Q 000184 827 PAWQVLAEFPKSITPIVSSIADAT--PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAA 904 (1890)
Q Consensus 827 ~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~~a~~~L~~l~~~~~~~~g~~i~~~~~~~~~~~~~~l~s~~~~~r~~~~~ 904 (1890)
.++-.++.++.=+.+.=.++. ..+-..|..++.-|+.--+......+.. ...+..++.+..+|++..+|-.|.|
T Consensus 773 ---~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~-~~~i~~~L~~~~k~~~~~tK~~A~w 848 (859)
T KOG1241|consen 773 ---LVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLD-EDWIKDFLNEGRKSSTQKTKDLARW 848 (859)
T ss_pred ---hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcc-hHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 111222333332222222222 3344444455544433222222222222 2344556666667888999999999
Q ss_pred HHHHHhhh
Q 000184 905 LLICAAKV 912 (1890)
Q Consensus 905 ~~~~~a~~ 912 (1890)
+.-.+-|.
T Consensus 849 a~e~ikr~ 856 (859)
T KOG1241|consen 849 ATEEIKRQ 856 (859)
T ss_pred HHHHHHHH
Confidence 97776543
No 37
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.13 E-value=4.3e-09 Score=120.11 Aligned_cols=190 Identities=21% Similarity=0.221 Sum_probs=159.3
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh
Q 000184 372 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 451 (1890)
Q Consensus 372 ~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~ 451 (1890)
+-|+.+|+...+..+++.+..++++.+..+.++..+.+.|+++.+..++.++++.+++.|+.+|.|++.+. ++...+.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en~~~Ik- 92 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-ENQEQIK- 92 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hhHHHHH-
Confidence 55677777666556799999999999999999999999999999999999999999999999999998874 4455453
Q ss_pred cCcHHHHHHhhCCC--CHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHH
Q 000184 452 REGIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI 529 (1890)
Q Consensus 452 ~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~ 529 (1890)
..++.+.+...+. +..+|..+..+|.||+. .++.+..+.. .++.++.+|.+++..+|.++.++|.||+. ++..
T Consensus 93 -~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~ 167 (254)
T PF04826_consen 93 -MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDM 167 (254)
T ss_pred -HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHH
Confidence 3567666654443 78999999999999984 5666666644 79999999999999999999999999998 5787
Q ss_pred HHHHHhCCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCC
Q 000184 530 RACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKS 568 (1890)
Q Consensus 530 r~~i~~~g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~ 568 (1890)
.+.+...++...++.++... +......+.....|+..+-
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 77778888999999999986 4567888888888886643
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.05 E-value=7.2e-07 Score=116.60 Aligned_cols=499 Identities=13% Similarity=0.094 Sum_probs=311.6
Q ss_pred HHhhcCCCCChHHHHHHHH-HHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhc
Q 000184 374 LVNQFKPRLPFLVQERTIE-ALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGR 452 (1890)
Q Consensus 374 L~~ll~~~~~~~~~~~a~~-aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~ 452 (1890)
|.+.|++.+... +..+.. .+..+..+.+. ....+-++.++.+.+..+++.....+.+.+..+++. .+
T Consensus 37 Lr~~L~s~~~~~-kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel--al--- 104 (746)
T PTZ00429 37 LQNDLNGTDSYR-KKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK--AL--- 104 (746)
T ss_pred HHHHHHCCCHHH-HHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH--HH---
Confidence 444455544433 333433 33434343332 224556777888999999999988888887765442 11
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 000184 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 532 (1890)
Q Consensus 453 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~ 532 (1890)
-++..|.+-+.++++.+|..|.++|+++-. ++..+. .++++.+.+.+.++-+|..|+.++.++...+++ .
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---l 174 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---L 174 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---c
Confidence 357788888999999999999999999863 432222 456778888999999999999999999875443 3
Q ss_pred HHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC------CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchH
Q 000184 533 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT------ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 606 (1890)
Q Consensus 533 i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~------~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~ 606 (1890)
+.+.|.++.|.+++.+.++.+..+|..+|..+..+... ..+..++..+.+.++-.+...++.|.. .......
T Consensus 175 v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P~~~~ 252 (746)
T PTZ00429 175 FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA--QRPSDKE 252 (746)
T ss_pred ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh--cCCCCcH
Confidence 44578889999999999999999999999999765421 223334444444444444445555432 1111111
Q ss_pred HHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-hhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000184 607 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR-KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 685 (1890)
Q Consensus 607 ~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 685 (1890)
. ....+..+...|.+.++.+...|+.++.++.... ++... .......++|+.|+ +++++++--+++.+..+
T Consensus 253 e------~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~-~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 253 S------AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIE-RCTVRVNTALLTLS-RRDAETQYIVCKNIHAL 324 (746)
T ss_pred H------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHHHHHhh-CCCccHHHHHHHHHHHH
Confidence 1 1234778888899999999999999999998653 22221 12223447788775 45678888899888777
Q ss_pred HccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHH
Q 000184 686 FLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAA 765 (1890)
Q Consensus 686 ~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~a 765 (1890)
....+. +... -++.+.-...++. .++......|..|+..... . .++.-|.++..+.+.+.++.+.++
T Consensus 325 ~~~~P~-----lf~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv-~-----~IL~EL~eYa~d~D~ef~r~aIrA 391 (746)
T PTZ00429 325 LVIFPN-----LLRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTPSVA-P-----EILKELAEYASGVDMVFVVEVVRA 391 (746)
T ss_pred HHHCHH-----HHHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCcccH-H-----HHHHHHHHHhhcCCHHHHHHHHHH
Confidence 654331 1222 1444433444444 5899999999888743332 2 355677778877777899999999
Q ss_pred HHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhH
Q 000184 766 IARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSS 845 (1890)
Q Consensus 766 L~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 845 (1890)
+.++....+. ....++..|++++... ..+. .+++.++.++++..+.. ..+..|+..
T Consensus 392 Ig~lA~k~~~--------~a~~cV~~Ll~ll~~~-~~~v-~e~i~vik~IlrkyP~~--------------~il~~L~~~ 447 (746)
T PTZ00429 392 IASLAIKVDS--------VAPDCANLLLQIVDRR-PELL-PQVVTAAKDIVRKYPEL--------------LMLDTLVTD 447 (746)
T ss_pred HHHHHHhChH--------HHHHHHHHHHHHhcCC-chhH-HHHHHHHHHHHHHCccH--------------HHHHHHHHh
Confidence 9999854332 1236777888888753 3455 57889999998766431 123444433
Q ss_pred h---hcCChhHHHHHHHHHHHHhcCCccchhhhhccCccchHHHHHHHhhcCCCceeecchhHHHHHhhhchhhHHHhhh
Q 000184 846 I---ADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLN 922 (1890)
Q Consensus 846 l---~~~~~~~~~~a~~~L~~l~~~~~~~~g~~i~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~a~~~~~~~~~~~~ 922 (1890)
+ .-.++..+....++|..|+. .|..+......+++.|.+ +++++|....-..+++.-.. +
T Consensus 448 ~~~~~i~e~~AKaaiiWILGEy~~--------~I~~a~~~L~~~i~~f~~-E~~~VqlqlLta~vKlfl~~--------p 510 (746)
T PTZ00429 448 YGADEVVEEEAKVSLLWMLGEYCD--------FIENGKDIIQRFIDTIME-HEQRVQLAILSAAVKMFLRD--------P 510 (746)
T ss_pred hcccccccHHHHHHHHHHHHhhHh--------hHhhHHHHHHHHHhhhcc-CCHHHHHHHHHHHHHHHhcC--------c
Confidence 2 22457788887888888843 343333232233333333 45566655444433332110 0
Q ss_pred ccccchhhHHHHHHHHHhhcCCCCcCCCCChhHHHHHhhhhhh
Q 000184 923 HSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSE 965 (1890)
Q Consensus 923 ~~~~~~~~i~~Lv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 965 (1890)
......+..+...+...+ .++|.+..|.-..+.|+.
T Consensus 511 --~~~~~~l~~vL~~~t~~~-----~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 511 --QGMEPQLNRVLETVTTHS-----DDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred --HHHHHHHHHHHHHHHhcC-----CChhHHHHHHHHHHHHcC
Confidence 012223333333332222 356777777777776543
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.05 E-value=1.2e-06 Score=114.54 Aligned_cols=515 Identities=13% Similarity=0.132 Sum_probs=311.8
Q ss_pred cCChHHHHHHhccCChHHHHHHHHHH-HHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhC-Ch
Q 000184 1282 RQAVQPLVEILNTGLEREQHAAIAAL-VRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG-NT 1359 (1890)
Q Consensus 1282 ~~~i~~Lv~lL~~~~~~~~~~A~~aL-~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~-~~ 1359 (1890)
+|-+..|-..|++.+...|..|++-+ ..+..+.+... ..+..++.+.+. +.+++...--.+.+.+. ++
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~---------LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~p 100 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY---------LFVDVVKLAPST-DLELKKLVYLYVLSTARLQP 100 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH---------HHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCh
Confidence 55677788888888887777777644 44444443322 223345566553 55666666555555543 33
Q ss_pred hhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhcc
Q 000184 1360 RIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGK 1439 (1890)
Q Consensus 1360 ~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~ 1439 (1890)
+. ..-++..+.+=+.++++.+|..|++.|+.+. .++..+.+ +.++.+.+.+.++-||+.|+.|+.++-.
T Consensus 101 el-----alLaINtl~KDl~d~Np~IRaLALRtLs~Ir-~~~i~e~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 101 EK-----ALLAVNTFLQDTTNSSPVVRALAVRTMMCIR-VSSVLEYT-----LEPLRRAVADPDPYVRKTAAMGLGKLFH 169 (746)
T ss_pred HH-----HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-cHHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 31 1234667777888999999999999999985 33344433 6788899999999999999999999976
Q ss_pred CChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHH
Q 000184 1440 DRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVL 1519 (1890)
Q Consensus 1440 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL 1519 (1890)
..|+ .+.+.+.++.|.++|.+.+..|...+..++..+....... .....+.+..|+..+.+ .+++.|...++.|
T Consensus 170 ~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e--~~EW~Qi~IL~lL 243 (746)
T PTZ00429 170 DDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPE--CNEWGQLYILELL 243 (746)
T ss_pred hCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhc--CChHHHHHHHHHH
Confidence 6543 3456678999999999988888888877777665433211 11233445666666665 4499998888888
Q ss_pred HHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc--cccccchhccCcHHHHHHHhcCCCHHHHH
Q 000184 1520 VNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE--EQLQKDPVTQQVIGPLIRVLGSGIHILQQ 1597 (1890)
Q Consensus 1520 ~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~--~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~ 1597 (1890)
.... |+... .....+..+...|.+.++.|.-.|++++-++... ++..+... .....+|+.++ ++++++|.
T Consensus 244 ~~y~--P~~~~----e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqy 315 (746)
T PTZ00429 244 AAQR--PSDKE----SAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RRDAETQY 315 (746)
T ss_pred HhcC--CCCcH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHH
Confidence 5531 22111 1235688888889999999999999999988763 12111110 11226777774 67889999
Q ss_pred HHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHH
Q 000184 1598 RAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTV 1677 (1890)
Q Consensus 1598 ~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~ 1677 (1890)
-+++.|..+....|.-+..+ +.... +...||. .+....+-+|..++..+. .+.-+.-|.....+.+.+.+
T Consensus 316 vaLr~I~~i~~~~P~lf~~~--~~~Ff--~~~~Dp~---yIK~~KLeIL~~Lane~N---v~~IL~EL~eYa~d~D~ef~ 385 (746)
T PTZ00429 316 IVCKNIHALLVIFPNLLRTN--LDSFY--VRYSDPP---FVKLEKLRLLLKLVTPSV---APEILKELAEYASGVDMVFV 385 (746)
T ss_pred HHHHHHHHHHHHCHHHHHHH--HHhhh--cccCCcH---HHHHHHHHHHHHHcCccc---HHHHHHHHHHHhhcCCHHHH
Confidence 99999988887766544333 11111 2223331 233334555555541111 01234566677778889999
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHccCC-cHHHHHHHHHHHhh-chhhhhhhhcccccccc-ccccCChH
Q 000184 1678 IGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQ-CEETAARLLEVLLN-NGKIRESKATKSAILPL-SQYLLDPQ 1754 (1890)
Q Consensus 1678 ~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~~-~~~~a~~al~~L~~-~~~~r~~i~~~~~i~~L-~~~~~~~~ 1754 (1890)
..++.+++.++...+.. -...++.|+++++... ....++..+..+.. .+.. .++... +..+ ...+.++.
T Consensus 386 r~aIrAIg~lA~k~~~~-----a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~--~il~~L-~~~~~~~~i~e~~ 457 (746)
T PTZ00429 386 VEVVRAIASLAIKVDSV-----APDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL--LMLDTL-VTDYGADEVVEEE 457 (746)
T ss_pred HHHHHHHHHHHHhChHH-----HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH--HHHHHH-HHhhcccccccHH
Confidence 99999999998654432 2367888999997631 11122333333322 2221 111111 1111 12345566
Q ss_pred HHHHHHHHHHHHhcchhhhhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHH
Q 000184 1755 TQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVL 1834 (1890)
Q Consensus 1755 ~~~~~~~~la~l~~~~~~~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~ 1834 (1890)
......|+++-++.- +. .....++.+++-+... +.+||-..+.+...+....+...+ ..+..++
T Consensus 458 AKaaiiWILGEy~~~-------I~---~a~~~L~~~i~~f~~E-~~~VqlqlLta~vKlfl~~p~~~~-----~~l~~vL 521 (746)
T PTZ00429 458 AKVSLLWMLGEYCDF-------IE---NGKDIIQRFIDTIMEH-EQRVQLAILSAAVKMFLRDPQGME-----PQLNRVL 521 (746)
T ss_pred HHHHHHHHHHhhHhh-------Hh---hHHHHHHHHHhhhccC-CHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHH
Confidence 666556666544321 11 0112344444433444 689999999999988844332111 1334444
Q ss_pred HHh--CCCCCCchHHHHHHHHHHhccch---hhHhh
Q 000184 1835 DLI--GSSDPETSVQAAMFVKLLFSNHT---IQEYA 1865 (1890)
Q Consensus 1835 ~ll--~~~~~~~~~~a~~~l~~l~~~~~---~~~~~ 1865 (1890)
+.. ++.|++.+--|....++|.++.. .|+.+
T Consensus 522 ~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv 557 (746)
T PTZ00429 522 ETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVV 557 (746)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 333 35566655557777888877643 45553
No 40
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=2e-06 Score=105.79 Aligned_cols=504 Identities=15% Similarity=0.129 Sum_probs=289.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCC-HhHHHHHHHHHHH-hhhcCHHHHH
Q 000184 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKS-LSDHCKDARR 275 (1890)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~Aa~aL~~-Ls~~~~~~~~ 275 (1890)
++.|.. .-++|+.++.+|-.-|.++...+ . .+.+..|.+.|.+.+. ...|..|.-.|.| |...+++.+.
T Consensus 4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~n---f-----~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQN---F-----PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHH-HcCCCcchHHHHHHHHHHHHhcc---H-----HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 445555 44678888888888887766442 2 2335566666665543 4567777778887 4444444333
Q ss_pred HHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHh
Q 000184 276 EIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIY 355 (1890)
Q Consensus 276 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~ 355 (1890)
...+ +.+.- ..+....+..+++.+|.-. .|+.+...++..++|+.+
T Consensus 75 ~~~q--------RWl~l------~~e~reqVK~~il~tL~~~----------------ep~~~s~Aaq~va~IA~~---- 120 (859)
T KOG1241|consen 75 QYQQ--------RWLQL------PAEIREQVKNNILRTLGSP----------------EPRRPSSAAQCVAAIACI---- 120 (859)
T ss_pred HHHH--------HHHcC------CHHHHHHHHHHHHHHcCCC----------------CCCccchHHHHHHHHHHh----
Confidence 3322 11111 1122345566666665321 122222222223333321
Q ss_pred cccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhc-CcHHHHHHHhc--CCCHHHHHHHH
Q 000184 356 DSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENS-EAKRLLVGLIT--MATNEVQEELV 432 (1890)
Q Consensus 356 ~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~-g~i~~Lv~lL~--~~~~~v~~~a~ 432 (1890)
. -..+.-| ++++.|+.......+..+|+..+++++.++.+-+-....... ..+-.++..++ .++..+|..|+
T Consensus 121 E----lP~n~wp-~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~ 195 (859)
T KOG1241|consen 121 E----LPQNQWP-ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAAL 195 (859)
T ss_pred h----CchhhCH-HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHH
Confidence 0 0001111 455556666555555568999999999997754433222222 23445566554 45779999999
Q ss_pred HHHHHhhccCc-hhhHHHHhcCc-HHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHH
Q 000184 433 RALLKLCNNEG-SLWRALQGREG-IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAK 510 (1890)
Q Consensus 433 ~aL~~L~~~~~-~~~~~i~~~g~-i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 510 (1890)
.||.|--.-.. +..... +... .+...+.-.+++.+++..|..+|..+..-.-+.-..-......+.-+.-+.+.+++
T Consensus 196 ~aL~nsLef~~~nF~~E~-ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~de 274 (859)
T KOG1241|consen 196 NALYNSLEFTKANFNNEM-ERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDE 274 (859)
T ss_pred HHHHHHHHHHHHhhccHh-hhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99987432211 111111 2222 46666777889999999999999998753333222222333455555667788999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCCh-hHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCc----
Q 000184 511 AKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLP---- 585 (1890)
Q Consensus 511 ~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~-~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~---- 585 (1890)
+.-++..--.++|.. ++--.+ +.| +....+.| ..+..+-.++ +..+|.|+++|...++
T Consensus 275 ValQaiEFWsticeE--EiD~~~-e~~------e~~d~~~~p~~~~fa~~a~--------~~v~P~Ll~~L~kqde~~d~ 337 (859)
T KOG1241|consen 275 VALQAIEFWSTICEE--EIDLAI-EYG------EAVDQGLPPSSKYFARQAL--------QDVVPVLLELLTKQDEDDDD 337 (859)
T ss_pred HHHHHHHHHHHHHHH--HHHHHH-HHH------HHhhcCCCchhhHHHHHHH--------hHhhHHHHHHHHhCCCCccc
Confidence 999999888888863 332111 100 01111111 1122222222 2234556666544211
Q ss_pred ---chHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHH
Q 000184 586 ---ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWS 662 (1890)
Q Consensus 586 ---~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~ 662 (1890)
..-..|..||.-++.... ++++. ..+|.+-+=+++++-+-|+.|+.+++.+-.+++..+......+++|.
T Consensus 338 DdWnp~kAAg~CL~l~A~~~~-D~Iv~------~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ 410 (859)
T KOG1241|consen 338 DDWNPAKAAGVCLMLFAQCVG-DDIVP------HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPS 410 (859)
T ss_pred ccCcHHHHHHHHHHHHHHHhc-ccchh------hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHH
Confidence 133345555553332222 22111 23555555677899999999999999999998888877888899999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-----chH-HH
Q 000184 663 VMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-----SEV-SE 736 (1890)
Q Consensus 663 Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~-----~~~-~~ 736 (1890)
+++++.+++-.++..++++++.++.+.++..-......+.++.+++=|. ..+.+..+++|++.+|+.. ++. ..
T Consensus 411 ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt 489 (859)
T KOG1241|consen 411 IINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQT 489 (859)
T ss_pred HHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 9999998888899999999999998776422111233344444554443 3556889999999999710 000 00
Q ss_pred ---HHHhcCcHHHHHHHHhc---CCcchHHHHHHHHHHHhhcCcc
Q 000184 737 ---KAIAEEIILPATRVLCE---GTISGKTLAAAAIARLLHSRKI 775 (1890)
Q Consensus 737 ---~~~~~~~v~~L~~ll~~---~~~~~~~~aa~aL~~L~~~~~~ 775 (1890)
...-..++..|++.... +++..|..|-.||..+....+.
T Consensus 490 ~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 490 DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 01123455666665554 3344888899999998875443
No 41
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.03 E-value=3e-09 Score=109.32 Aligned_cols=117 Identities=33% Similarity=0.407 Sum_probs=110.3
Q ss_pred HHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChH
Q 000184 449 LQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED 528 (1890)
Q Consensus 449 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~ 528 (1890)
+.+.|+++.|++++.++++.++..++++|.+++...++.+..+.+.|+++.+++++.+++++++..++++|++|+...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 55789999999999999999999999999999987788999999999999999999999999999999999999998777
Q ss_pred HHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 000184 529 IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 565 (1890)
Q Consensus 529 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 565 (1890)
.+..+.+.|+++.|++++.+++..+++.+.++|++|+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 8888889999999999999999999999999999986
No 42
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.8e-07 Score=112.36 Aligned_cols=493 Identities=13% Similarity=0.076 Sum_probs=275.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHH
Q 000184 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG-REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1890)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 490 (1890)
.+|.+++..+++++.+|..|+.|+...-..... ..+.. ...++.+..+-.+.++++|...|.+|..|-...++ +-.
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~ 251 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLV 251 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcc
Confidence 467788888888999999999988664433221 11111 13467777777889999999999999988742222 211
Q ss_pred HHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHh--CCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000184 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 568 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~--~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~ 568 (1890)
-.=.+.++.+++.-++.++++--.|+.....++.. +.++..+.. ...+|.|++-+.-.+.+. +|.+ ...
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~------~LL~--~~e 322 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDI------ILLK--NNE 322 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccH------HHhc--Ccc
Confidence 11235677777777888888988999999999984 555555443 346666665544322111 0101 000
Q ss_pred CC-------CcH-HHHHHH-----Hh---------c--CC------cchHHHHHHHHHHHhhhcCchHHHHHhhhhcchH
Q 000184 569 DT-------ATI-SQLTAL-----LT---------S--DL------PESKVYVLDALKSMLSVVSFSDILREGSAANDAV 618 (1890)
Q Consensus 569 ~~-------~~i-~~L~~l-----L~---------~--~~------~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i 618 (1890)
++ +.+ |.+.+- .. + ++ -..+...+.+|.-|+++....- + ...+
T Consensus 323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L------~~l~ 395 (885)
T KOG2023|consen 323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-L------PILL 395 (885)
T ss_pred ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-H------HHHH
Confidence 00 000 000000 00 0 00 1133344455555555543322 1 1236
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHH
Q 000184 619 ETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAV 698 (1890)
Q Consensus 619 ~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 698 (1890)
|.|-+.|.++.-.+|+.+..+|+.++.+.-+.- .-.-...+|.|+.+|.+..+-|+.-.|++|...+.......+...
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~-~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~- 473 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEGCMQGF-VPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEY- 473 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhc-ccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhh-
Confidence 777778888888899999999999998743210 001123688889999999999999999999988643221111101
Q ss_pred hCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--CchHHHHHHhcCcHHHHHHHHhcCCcc---hHHHHHHHHHHHhhcC
Q 000184 699 ARDALSPLVVLAGSPVLEVAEQATCALANLIL--DSEVSEKAIAEEIILPATRVLCEGTIS---GKTLAAAAIARLLHSR 773 (1890)
Q Consensus 699 ~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~--~~~~~~~~~~~~~v~~L~~ll~~~~~~---~~~~aa~aL~~L~~~~ 773 (1890)
-...+..|+.-+-+++..|||.|+.|.+.+-. +++... .-+.++..|+..++..+.+ +-+.|...|+.-..+.
T Consensus 474 f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp--~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~ 551 (885)
T KOG2023|consen 474 FKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVP--YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHA 551 (885)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHH--HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHh
Confidence 12244555566668899999999999997752 222222 2345666666666665544 6677777776544221
Q ss_pred ccchhHhhhh------------hhhccHHHHHHHhhc----------cC-cccchHHHHHHHH----HHHhcCCCCCCCC
Q 000184 774 KIDYTITDCV------------NRAGTVLALVSFLES----------AS-GSVATSEALDALA----ILSRSGGASGHVK 826 (1890)
Q Consensus 774 ~~~~~~~~~~------------~~~g~l~~li~~l~~----------~~-~~v~~~~al~~L~----~l~~~~~~~~~~~ 826 (1890)
=+...+.+-+ .+...+.||.+.+.+ +. ..|. ..+++.|. ++++......+..
T Consensus 552 Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy-~Rc~~il~~t~q~~~~~~~~~~~~~ 630 (885)
T KOG2023|consen 552 LNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVY-QRCFRILQKTLQLLAKVQQDPTVEA 630 (885)
T ss_pred cCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHHHHHhccCCccccC
Confidence 1111111100 123345555554444 11 4455 55555554 4444444322222
Q ss_pred Ccccee---------------------ecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCCcc----chhhhhccCcc
Q 000184 827 PAWQVL---------------------AEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA----VLGDEVTGASG 881 (1890)
Q Consensus 827 ~~~~~~---------------------~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~----~~g~~i~~~~~ 881 (1890)
|.--.. +.-.+.+.-+..|..+..|.||+.++..|.-+...+.+ ...+.+.
T Consensus 631 pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~---- 706 (885)
T KOG2023|consen 631 PDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLP---- 706 (885)
T ss_pred CCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHH----
Confidence 111000 11122344456788888999999999988766443322 1111111
Q ss_pred chHHHHHHHhhcCCCceeecchhHHHHHhhhchhhHHHhhhccccchhhHHHHHHHHHhhc
Q 000184 882 CISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVE 942 (1890)
Q Consensus 882 ~~~~~~~~~l~s~~~~~r~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~Lv~~l~~~~ 942 (1890)
++-.-++.+...+--+|.|+++.+|-- . +.+.-..-.+.+..|+-.+++..
T Consensus 707 ----~lg~Nl~~~~isv~nNA~WAiGeia~k----~--g~~~~~~v~~vl~~L~~iin~~~ 757 (885)
T KOG2023|consen 707 ----ILGANLNPENISVCNNAIWAIGEIALK----M--GLKMKQYVSPVLEDLITIINRQN 757 (885)
T ss_pred ----HHhhcCChhhchHHHHHHHHHHHHHHH----h--chhhhhHHHHHHHHHHHHhcccC
Confidence 111223445556667899999988722 1 11112344556666776666444
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=7.7e-07 Score=107.19 Aligned_cols=609 Identities=13% Similarity=0.099 Sum_probs=329.0
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhc--------CChHHHHHHHhccCCCCchHHHHHHHHH
Q 000184 107 CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTE--------GVVPVLWEQLKNGLKSGNVVDNLLTGAL 178 (1890)
Q Consensus 107 ~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~--------g~ip~L~~ll~~~~~~~~~v~~~~~~~L 178 (1890)
.+|.|..+|.+++....+.|.+||..++.. .. . +.+. -.+|.+++..+. ..|.++..+.+|+
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcED----sa--~-~lds~~~~rpl~~mipkfl~f~~h---~spkiRs~A~~cv 198 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICED----SA--Q-FLDSDVLTRPLNIMIPKFLQFFKH---PSPKIRSHAVGCV 198 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhh----hH--H-HHhhhcccCchHHhHHHHHHHHhC---CChhHHHHHHhhh
Confidence 368999999999989999999999998882 11 1 1111 136777777765 4677888888887
Q ss_pred HHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHH
Q 000184 179 RNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAE 258 (1890)
Q Consensus 179 ~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 258 (1890)
..+--.....-- ..-...++.+..+-.+.+++||.+.|..|..|..-..+.. .-.-.+.++.+++.-+. .|+++..+
T Consensus 199 Nq~i~~~~qal~-~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl-~phl~~IveyML~~tqd-~dE~VALE 275 (885)
T KOG2023|consen 199 NQFIIIQTQALY-VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL-VPHLDNIVEYMLQRTQD-VDENVALE 275 (885)
T ss_pred hheeecCcHHHH-HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc-ccchHHHHHHHHHHccC-cchhHHHH
Confidence 665533211100 1112457778888888999999999999987765443211 11113344445544444 46789999
Q ss_pred HHHHHHHhhhcCHHHHHHHHh--cCChHHHHHhhcCCCcccc-ch---------hhhHHHHHH----HHHHHHHhhCCCc
Q 000184 259 AAGALKSLSDHCKDARREIAG--SNGIPAMINATIAPSKEFM-QG---------EYAQALQEN----AMCALANISGGLS 322 (1890)
Q Consensus 259 Aa~aL~~Ls~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~-~~---------~~~~~l~e~----a~~aL~nl~~~~~ 322 (1890)
|+.....++. .+..+..+.. ..-||.|++-|.-++.... .+ ..++.++-. =.....+..
T Consensus 276 ACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~---- 350 (885)
T KOG2023|consen 276 ACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDA---- 350 (885)
T ss_pred HHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccc----
Confidence 9999999998 4455554433 2345666555544321100 00 000000000 000000000
Q ss_pred hhhhhhhccccC-CC-----------ChhhhhhhHhHHHHHHHHhcccccCCCCCChhhh----HHHHHhhcCCCCChHH
Q 000184 323 NVISSLGQSLES-CS-----------SPAQVADTLGALASALMIYDSKAESTKPSDPLIV----EQTLVNQFKPRLPFLV 386 (1890)
Q Consensus 323 ~~i~~l~~~~~~-~~-----------~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i----~~~L~~ll~~~~~~~~ 386 (1890)
....++ .+ .+.=. ..++.-+-.+|+ ..+ .|.|.+.|.+ ..+.+
T Consensus 351 ------~~eDdddDe~DDdD~~~dWNLRkCS---AAaLDVLanvf~-----------~elL~~l~PlLk~~L~~-~~W~v 409 (885)
T KOG2023|consen 351 ------DDEDDDDDEDDDDDAFSDWNLRKCS---AAALDVLANVFG-----------DELLPILLPLLKEHLSS-EEWKV 409 (885)
T ss_pred ------ccccccccccccccccccccHhhcc---HHHHHHHHHhhH-----------HHHHHHHHHHHHHHcCc-chhhh
Confidence 000000 00 00000 112222222332 233 4444444444 44567
Q ss_pred HHHHHHHHHHhhCCC--ccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccC--chhhHHHHhcCcHHHHHHhh
Q 000184 387 QERTIEALASLYGNP--LLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNE--GSLWRALQGREGIQLLISLL 462 (1890)
Q Consensus 387 ~~~a~~aL~~L~~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL 462 (1890)
|+.+.-+++.++... -.-..+. ..+|.++++|.+..+-||.-.+|.|...+.-- ....+.+. ..+..|+..+
T Consensus 410 rEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~l 485 (885)
T KOG2023|consen 410 REAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRL 485 (885)
T ss_pred hhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHH
Confidence 999999999886432 1222222 46788999999999999999999987654310 01111111 2334444555
Q ss_pred CCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccC----------CCHHHHHHHHHHHHHHhcCChHHHHH
Q 000184 463 GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES----------GSAKAKEDSASILRNLCNHSEDIRAC 532 (1890)
Q Consensus 463 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~~e~a~~aL~~L~~~~~~~r~~ 532 (1890)
-+.+..+|++|+.++..+-.... ...||.|-.+|.+ .+--+-..|.++|.+=+.+.-.-+..
T Consensus 486 lD~NK~VQEAAcsAfAtleE~A~--------~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Y 557 (885)
T KOG2023|consen 486 LDSNKKVQEAACSAFATLEEEAG--------EELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAY 557 (885)
T ss_pred hcccHHHHHHHHHHHHHHHHhcc--------chhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHH
Confidence 57899999999999998863211 1133433333322 23344456666666655421111111
Q ss_pred HHhCCCHHHHHHH---hhcCChhH------HHHHHHHHHH-HhcCCCCCcHHHHHHHH--------hcCC--------cc
Q 000184 533 VESADAVPALLWL---LKNGSANG------KEIAAKTLNH-LIHKSDTATISQLTALL--------TSDL--------PE 586 (1890)
Q Consensus 533 i~~~g~i~~Lv~l---l~~~~~~~------~~~Aa~aL~~-L~~~~~~~~i~~L~~lL--------~~~~--------~~ 586 (1890)
| .-.+|||++- +.+.+.+. ....+.+|.. +.-.. ..+......++ +... .+
T Consensus 558 i--qiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~-~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkd 634 (885)
T KOG2023|consen 558 I--QILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYA-QPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKD 634 (885)
T ss_pred H--HHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccC-HHHHHHHHHHHHHHHHHHHhccCCccccCCCcc
Confidence 1 1245777643 33333221 1111111110 00000 00111111111 1111 01
Q ss_pred hHHHHHHHHHHHhh-hcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHH
Q 000184 587 SKVYVLDALKSMLS-VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMK 665 (1890)
Q Consensus 587 ~~~~a~~aL~~L~~-~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~ 665 (1890)
....+.+-+..|+. +.+ .++..+...+....+...+.+.-+++|..|-..|+.++....+... .-.+..+|.+-.
T Consensus 635 fiI~sLDL~SGLaegLg~---~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~-p~~~~fl~~lg~ 710 (885)
T KOG2023|consen 635 FIIVSLDLLSGLAEGLGS---HIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVI-PNLADFLPILGA 710 (885)
T ss_pred eEEEeHHHHhHHHHHhhh---chHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHhh
Confidence 11112222222221 111 1233455566677888889999999999999999999986432211 112234555555
Q ss_pred hhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCC--HHHHHHHHHHHHHHh-cCchHHHHHHhcC
Q 000184 666 LLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPV--LEVAEQATCALANLI-LDSEVSEKAIAEE 742 (1890)
Q Consensus 666 lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~--~ev~~~aa~aL~nL~-~~~~~~~~~~~~~ 742 (1890)
-+.+....+...|+++++-|+..-....+. .-...+..|+..++.++ ..+-++.+.+++.|. ..|+......+.-
T Consensus 711 Nl~~~~isv~nNA~WAiGeia~k~g~~~~~--~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f 788 (885)
T KOG2023|consen 711 NLNPENISVCNNAIWAIGEIALKMGLKMKQ--YVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSF 788 (885)
T ss_pred cCChhhchHHHHHHHHHHHHHHHhchhhhh--HHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHH
Confidence 556666778999999999997644322222 22345566666766654 567799999999998 5566555555555
Q ss_pred cHHHHHHHHhcCCcchHHHHHHHHHHHhhcCcc
Q 000184 743 IILPATRVLCEGTISGKTLAAAAIARLLHSRKI 775 (1890)
Q Consensus 743 ~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~ 775 (1890)
.-+++..+-.-++++.+..|-+.++++..-.+.
T Consensus 789 ~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 789 MRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHheeeCch
Confidence 556666665666777899999999999865443
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.99 E-value=5.1e-09 Score=107.57 Aligned_cols=118 Identities=25% Similarity=0.374 Sum_probs=109.8
Q ss_pred hhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChh
Q 000184 407 LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDD 486 (1890)
Q Consensus 407 l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~ 486 (1890)
+.+.|+++.+++++++++++++..++.+|.+++...+.....+.+.|+++.+++++.++++.++..++++|+||+...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 45678999999999999999999999999999998788888888899999999999999999999999999999986667
Q ss_pred cHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 000184 487 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 524 (1890)
Q Consensus 487 ~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~ 524 (1890)
....+.+.|+++.|++++.+++.++++.++++|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 78888999999999999999999999999999999973
No 45
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.91 E-value=8.4e-08 Score=117.39 Aligned_cols=243 Identities=19% Similarity=0.066 Sum_probs=186.6
Q ss_pred cCcHHHHHHHHh-cCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhH
Q 000184 1241 FAAVSQLVAVLR-LGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1319 (1890)
Q Consensus 1241 ~g~i~~Lv~lL~-~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~ 1319 (1890)
..+++.|+..|. +++...+..++.++... .+..++..|++.|.+.++.++..++.+|+.+..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~----------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ----------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc----------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 457899999995 45566666665555421 111248999999999999999999999998774
Q ss_pred HHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCC
Q 000184 1320 AVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDD 1399 (1890)
Q Consensus 1320 ~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~ 1399 (1890)
..+.+.|.++|.+. +..++..+..+++.- .....++++.+|.++++.++..|+++|+.+.
T Consensus 116 ------~~a~~~L~~~L~~~-~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~-- 175 (410)
T TIGR02270 116 ------RQAEPWLEPLLAAS-EPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP-- 175 (410)
T ss_pred ------hHHHHHHHHHhcCC-ChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc--
Confidence 46788899999765 667888877777652 2345678999999999999999999999996
Q ss_pred chHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHH
Q 000184 1400 EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRIL 1479 (1890)
Q Consensus 1400 ~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L 1479 (1890)
...+++.|...+.+.|+.||+.|+.+|+.++... +++.+..........+....+.++
T Consensus 176 --------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~-----------A~~~l~~~~~~~g~~~~~~l~~~l--- 233 (410)
T TIGR02270 176 --------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGSRL-----------AWGVCRRFQVLEGGPHRQRLLVLL--- 233 (410)
T ss_pred --------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHh-----------HHHHHHHHHhccCccHHHHHHHHH---
Confidence 3346788899999999999999999999998754 567777745443332333233232
Q ss_pred HhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHH
Q 000184 1480 TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAA 1559 (1890)
Q Consensus 1480 ~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~ 1559 (1890)
+.... ...++.|..++.+ +.++..++.+|+.+ .....++.|+..++++. ++..|.
T Consensus 234 al~~~-------~~a~~~L~~ll~d----~~vr~~a~~AlG~l------------g~p~av~~L~~~l~d~~--~aR~A~ 288 (410)
T TIGR02270 234 AVAGG-------PDAQAWLRELLQA----AATRREALRAVGLV------------GDVEAAPWCLEAMREPP--WARLAG 288 (410)
T ss_pred HhCCc-------hhHHHHHHHHhcC----hhhHHHHHHHHHHc------------CCcchHHHHHHHhcCcH--HHHHHH
Confidence 22221 2569999999986 44899999999998 88999999999998775 999999
Q ss_pred HHHHHhhc
Q 000184 1560 ELLSHLLL 1567 (1890)
Q Consensus 1560 ~aL~~l~~ 1567 (1890)
+++..|+.
T Consensus 289 eA~~~ItG 296 (410)
T TIGR02270 289 EAFSLITG 296 (410)
T ss_pred HHHHHhhC
Confidence 99999987
No 46
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.89 E-value=1.2e-06 Score=106.44 Aligned_cols=343 Identities=14% Similarity=0.091 Sum_probs=225.5
Q ss_pred CCchHHHHHHhhc-CCHHHHHHHHHHHHHhhccchhhHHHHhc------CChHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000184 64 SQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKENELRVKVLLG------GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQG 136 (1890)
Q Consensus 64 ~g~v~~Lv~lL~~-~~~~~~~~aa~~L~~L~~~~~~~~~i~~~------g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~ 136 (1890)
..++..++.+|+. .++++..+....+..+..++..+...+.. ....+++.+|.++|.-....++..|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 3677788998875 45688899999999999777666654432 4567888999988888888888888887663
Q ss_pred CCCCccccchhhhcCChHHH----HHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCC--CH
Q 000184 137 GAKDYVGSKIFSTEGVVPVL----WEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QS 210 (1890)
Q Consensus 137 ~~~~~~~~~~~~~~g~ip~L----~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~ 210 (1890)
+... ......+.+ ..+++.. .+...+..+..+|..|... +.+|..+.+.+|++.|+++|+.. +.
T Consensus 132 ~~~~-------~~~~~l~~~~~~l~~~l~~~--~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~ 201 (429)
T cd00256 132 GLAK-------MEGSDLDYYFNWLKEQLNNI--TNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGF 201 (429)
T ss_pred Cccc-------cchhHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccH
Confidence 2211 111233333 3444432 2233555677889888754 47888788899999999999873 45
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCH------HHHHHHHhcCChH
Q 000184 211 STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK------DARREIAGSNGIP 284 (1890)
Q Consensus 211 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~------~~~~~i~~~g~i~ 284 (1890)
..+.+++-+++.++...+ ....+...+.++.|+++++....+++.+.+..+|+|+...+. .....+++.|.++
T Consensus 202 Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~ 280 (429)
T cd00256 202 QLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK 280 (429)
T ss_pred HHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH
Confidence 788999999988876655 555666789999999999988778899999999999997431 2334556655544
Q ss_pred HHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCC
Q 000184 285 AMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKP 364 (1890)
Q Consensus 285 ~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~ 364 (1890)
++..|.... -.|+++.+.--.. .. .+.+....-.
T Consensus 281 -~l~~L~~rk------~~DedL~edl~~L-~e-------------------------------------~L~~~~k~lt- 314 (429)
T cd00256 281 -TLQSLEQRK------YDDEDLTDDLKFL-TE-------------------------------------ELKNSVQDLS- 314 (429)
T ss_pred -HHHHHhcCC------CCcHHHHHHHHHH-HH-------------------------------------HHHHHHHHcC-
Confidence 455554322 1123333221111 10 0000000000
Q ss_pred CChhhhHHHHHhhcCC-------CC-ChHHHHHHHHHHHHhhCCCccchhhhhc--CcHHHHHHHhc-CCCHHHHHHHHH
Q 000184 365 SDPLIVEQTLVNQFKP-------RL-PFLVQERTIEALASLYGNPLLSIKLENS--EAKRLLVGLIT-MATNEVQEELVR 433 (1890)
Q Consensus 365 ~~~~~i~~~L~~ll~~-------~~-~~~~~~~a~~aL~~L~~~~~~~~~l~~~--g~i~~Lv~lL~-~~~~~v~~~a~~ 433 (1890)
.+.....++.++ +. +..=++ |..++.+. ..++.|+.+|. +.|+.+..-||.
T Consensus 315 ----sfD~Y~~El~sg~L~WSp~H~se~FW~E--------------N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~ 376 (429)
T cd00256 315 ----SFDEYKSELRSGRLHWSPVHKSEKFWRE--------------NADRLNEKNYELLKILIHLLETSVDPIILAVACH 376 (429)
T ss_pred ----CHHHHHHHHhcCCccCCCCCCCchHHHH--------------HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhh
Confidence 011111111111 11 100011 12223222 24678889984 668888888999
Q ss_pred HHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 000184 434 ALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 481 (1890)
Q Consensus 434 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~ 481 (1890)
-++.++...|.-+..+.+-|+-..+++++.+++++++++|..++..|-
T Consensus 377 Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 377 DIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred hHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999998877777888999999999999999999999999988774
No 47
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.89 E-value=1e-07 Score=116.59 Aligned_cols=243 Identities=16% Similarity=0.014 Sum_probs=184.0
Q ss_pred hCchHHHHHHHc-cCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHH
Q 000184 1368 ARCVEPLVSLLV-TEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL 1446 (1890)
Q Consensus 1368 ~~~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 1446 (1890)
..+++.|+..|. +++.+++..++.++.... . ..++..|+..|.+.++.+|..+..+|+.+....
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~----- 117 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQE--D--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ----- 117 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccC--C--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH-----
Confidence 567888999994 666777777777765442 1 113899999999999999999999999998776
Q ss_pred HHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCC
Q 000184 1447 EMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHP 1526 (1890)
Q Consensus 1447 ~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~ 1526 (1890)
+.+.|+.+|.++++.++..+..+++... ....++|..+|++++ +.|+..|+.+|+.+
T Consensus 118 ------a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d--~~Vra~A~raLG~l---- 174 (410)
T TIGR02270 118 ------AEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHED--ALVRAAALRALGEL---- 174 (410)
T ss_pred ------HHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCC--HHHHHHHHHHHHhh----
Confidence 7799999999988888877776665411 124789999999877 99999999999998
Q ss_pred CcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000184 1527 QCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSI 1606 (1890)
Q Consensus 1527 ~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l 1606 (1890)
.....++.|...+.++++.||..|+++++.+.. ..++.++..+...........+..++...
T Consensus 175 --------~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 175 --------PRRLSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA 236 (410)
T ss_pred --------ccccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence 778889999999999999999999999987754 45678888866665566666666666555
Q ss_pred hccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHH
Q 000184 1607 ALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLV 1686 (1890)
Q Consensus 1607 ~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~ 1686 (1890)
... ..++.|..++.+.+ ++..+.. +++.+..- .+++.|+..+.+.. ++..|.+++..
T Consensus 237 ~~~--------~a~~~L~~ll~d~~--vr~~a~~-AlG~lg~p----------~av~~L~~~l~d~~--~aR~A~eA~~~ 293 (410)
T TIGR02270 237 GGP--------DAQAWLRELLQAAA--TRREALR-AVGLVGDV----------EAAPWCLEAMREPP--WARLAGEAFSL 293 (410)
T ss_pred Cch--------hHHHHHHHHhcChh--hHHHHHH-HHHHcCCc----------chHHHHHHHhcCcH--HHHHHHHHHHH
Confidence 322 23566777777533 5444333 33333222 38999999987654 99999999999
Q ss_pred hhc
Q 000184 1687 LES 1689 (1890)
Q Consensus 1687 L~~ 1689 (1890)
++-
T Consensus 294 ItG 296 (410)
T TIGR02270 294 ITG 296 (410)
T ss_pred hhC
Confidence 985
No 48
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.86 E-value=4.1e-05 Score=91.07 Aligned_cols=471 Identities=13% Similarity=0.050 Sum_probs=269.2
Q ss_pred CCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCC-HhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHH
Q 000184 207 LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLSDHCKDARREIAGSNGIPA 285 (1890)
Q Consensus 207 ~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~ 285 (1890)
++|+.++.++-.-|.++..++= .. .+..+++.|-..++ .+.|..|.-+|.|--..+++.++.=.. .
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF---~q-----f~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~-----q 82 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDF---EQ-----FISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCS-----Q 82 (858)
T ss_pred CCCCCccccHHHHHHHhccccH---HH-----HHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHH-----H
Confidence 4566677666666656654421 11 23445555544333 467888888888744434333322111 1
Q ss_pred HHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCC
Q 000184 286 MINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPS 365 (1890)
Q Consensus 286 Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~ 365 (1890)
.- + .+..+....+...+.++|.-. .|++....++..++|+..- +. ...
T Consensus 83 rW--~------~~~~E~k~qvK~~al~aL~s~----------------epr~~~~Aaql~aaIA~~E--lp------~~~ 130 (858)
T COG5215 83 RW--L------GMRHESKEQVKGMALRALKSP----------------EPRFCTMAAQLLAAIARME--LP------NSL 130 (858)
T ss_pred hh--c------cCCHHHHHHHHHHHHHHhcCC----------------ccHHHHHHHHHHHHHHHhh--Cc------ccc
Confidence 10 0 011222355666666665331 1233333333334443210 00 000
Q ss_pred ChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHH-HH-HHHhc-CCCHHHHHHHHHHHHHhhc-c
Q 000184 366 DPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKR-LL-VGLIT-MATNEVQEELVRALLKLCN-N 441 (1890)
Q Consensus 366 ~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~-~L-v~lL~-~~~~~v~~~a~~aL~~L~~-~ 441 (1890)
- .++...++.....+.+...++.++.+++.......-...+...+.+- .+ ...++ ..+..+|..++.+|.+-+. -
T Consensus 131 w-p~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv 209 (858)
T COG5215 131 W-PGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV 209 (858)
T ss_pred c-hHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH
Confidence 1 14555666666666777789999999998855433333333333322 12 22233 4467899999999987332 1
Q ss_pred CchhhHHHHhcC-cHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHH
Q 000184 442 EGSLWRALQGRE-GIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILR 520 (1890)
Q Consensus 442 ~~~~~~~i~~~g-~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~ 520 (1890)
....+.. .+.. ..+...+.-+.++.++|..|.++|..+..-.-.--+...+.-......+.+++.++++.-.++.--.
T Consensus 210 ~~nf~~E-~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWs 288 (858)
T COG5215 210 QGNFCYE-EERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWS 288 (858)
T ss_pred HHhhcch-hhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 1111111 1112 2456667777889999999999999887433333344445545556677888999999988888776
Q ss_pred HHhcCChHHHHHHH----------------hCCCHHHHHHHhhcC-------ChhHHHHHHHHHHHHhcCCCCCcHHHHH
Q 000184 521 NLCNHSEDIRACVE----------------SADAVPALLWLLKNG-------SANGKEIAAKTLNHLIHKSDTATISQLT 577 (1890)
Q Consensus 521 ~L~~~~~~~r~~i~----------------~~g~i~~Lv~ll~~~-------~~~~~~~Aa~aL~~L~~~~~~~~i~~L~ 577 (1890)
.+|...-+.-..+. -..++|.|+.||... +.+.-..|+.+|.-++....+..+++.+
T Consensus 289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl 368 (858)
T COG5215 289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVL 368 (858)
T ss_pred HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHH
Confidence 77763111111110 123789999999873 2346677777887777665566666655
Q ss_pred HH----HhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHH
Q 000184 578 AL----LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRES 653 (1890)
Q Consensus 578 ~l----L~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~ 653 (1890)
.. +++++-..++.+.-|+|++..- +..+.+... -..++|.+...+.++.-.++..++|+++.++..-.+.
T Consensus 369 ~FvEqni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~--V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~--- 442 (858)
T COG5215 369 GFVEQNIRSESWANREAAVMAFGSVMHG-PCEDCLTKI--VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI--- 442 (858)
T ss_pred HHHHHhccCchhhhHHHHHHHhhhhhcC-ccHHHHHhh--HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh---
Confidence 54 4566666777788787765432 222222222 3667999999999889999999999999999764332
Q ss_pred HHHcCchHHHHHhh---cCCCHHHHHHHHHHHHHHHccCchhhHH--HHHhCCChHHHHH-HhC-----CCCHHHHHHHH
Q 000184 654 SIAVKTLWSVMKLL---DVGSECILVEASRCLAAIFLSVRENREV--AAVARDALSPLVV-LAG-----SPVLEVAEQAT 722 (1890)
Q Consensus 654 ~~~~g~i~~Lv~lL---~~~~~~v~~~a~~aL~~L~~~~~~~~~~--~~~~~~~v~~Lv~-ll~-----~~~~ev~~~aa 722 (1890)
+--.|-+++.+..+ -.+++.+...+++...|++.+.++..+. ++. ...-+.++. |++ ......|..+-
T Consensus 443 i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~f 521 (858)
T COG5215 443 ISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNESNLRVSLF 521 (858)
T ss_pred cCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 33445555555443 2456778889999999998765432211 111 222233332 221 23445777888
Q ss_pred HHHHHHhcC
Q 000184 723 CALANLILD 731 (1890)
Q Consensus 723 ~aL~nL~~~ 731 (1890)
.||..|..-
T Consensus 522 saLgtli~~ 530 (858)
T COG5215 522 SALGTLILI 530 (858)
T ss_pred HHHHHHHhh
Confidence 888888743
No 49
>PRK14707 hypothetical protein; Provisional
Probab=98.85 E-value=0.0029 Score=86.43 Aligned_cols=570 Identities=16% Similarity=0.139 Sum_probs=283.1
Q ss_pred ccccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCccchhHHHhcCcHHHHHHHHhcCCcc-hhHHHHHHHHHHhhc
Q 000184 1152 ATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQD-ATEEAATDLLGILFS 1230 (1890)
Q Consensus 1152 ~~~~~~i~~Lv~~L~~~~~~~~~~~~A~~~L~~la~~~~~~r~~i~eag~l~~Lv~~L~~~~~~-~q~~a~~~ll~~l~~ 1230 (1890)
.+....+-.+++-|++-|+.+..+..|.++=..+..... - ..-+.+-.+...++.|+.=+.+ .-..|+..+-..+..
T Consensus 705 al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~-l-~~a~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa~ 782 (2710)
T PRK14707 705 ELNPVDVANALNALSKWPRTPVCAAVASALAARVVAEPR-L-RKAFDAQQVATALNALSKWPDNQACAAAANTLAERQLR 782 (2710)
T ss_pred hcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcChh-h-hhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh
Confidence 355566677788888888777555666666666643222 1 2234556788888999886444 344455666666778
Q ss_pred CHHHHHhhhhcCcHHHHHHHHhcCC-hhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhcc-CChHHHHHHHHHHH
Q 000184 1231 SAEIRRHESAFAAVSQLVAVLRLGG-RGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNT-GLEREQHAAIAALV 1308 (1890)
Q Consensus 1231 ~~~~~~~~~~~g~i~~Lv~lL~~~~-~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~-~~~~~~~~A~~aL~ 1308 (1890)
++.++..+...+.-..|-.+=|.++ ...|..|...=.+|.....-|.. .+.+.|.-.+.-|.. ++...-..|+.+|.
T Consensus 783 ~~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~a-f~AQ~VANaLNALSKWPd~~~Cr~AA~aLA 861 (2710)
T PRK14707 783 EPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRLREA-FDVQHVATVLNAMSKWPDNAVCAAAAGAMA 861 (2710)
T ss_pred CcchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHh-cCHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 8888765443333333333334443 33343333323344444444444 334456666666654 33444445566664
Q ss_pred -HHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhh-HHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHc--cCChH
Q 000184 1309 -RLLSENPSRALAVADVEMNAVDVLCRILSSNCSMEL-KGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV--TEFSP 1384 (1890)
Q Consensus 1309 -~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~-~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~ 1384 (1890)
.|..+.+.+..+ ...-+-..+.-|+.-|+... ...+..+-..|..+++.+..+...+ +...+.-|+ .+.+.
T Consensus 862 ~RLa~e~~LR~aL----~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~aQ~-VAN~LNALSKWPd~~~ 936 (2710)
T PRK14707 862 ERLADEPELRHTL----TAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALSAHR-VATALNALSKWPDIPV 936 (2710)
T ss_pred HHHhcChhhhhcc----chHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhccHHH-HHHHHhhhccCCCchH
Confidence 444433443322 12223334455554455444 4444455566778888777765444 333333333 23344
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHH-hccCChhhHHHHHHcCcHHHHHHHhcc
Q 000184 1385 AQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVK-LGKDRPSCKLEMVKAGVIESVLDILHE 1463 (1890)
Q Consensus 1385 ~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~-l~~~~~~~~~~l~~~~~i~~L~~lL~~ 1463 (1890)
.+..+......+..++..+..+-..+....|-.+-+=++...-+.|+.+|.. |..+ +.-+..+--.|+-..| .-|+.
T Consensus 937 Cr~Aa~aLA~rLa~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~-~~LR~al~aQ~vAN~L-NALSK 1014 (2710)
T PRK14707 937 CATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDE-PALRNALDPIGMANAL-NALSK 1014 (2710)
T ss_pred HHHHHHHHHHHhccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhcc-HHHHhhcchHHHHHHH-hhhhc
Confidence 4444444444555787877766444444444444444555445555555554 4444 5666555444333333 33332
Q ss_pred -CChhHHHHHHHHHHHH-HhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHH-HhhcCCCcccccccccCCch
Q 000184 1464 -APDFLCSAFAELLRIL-TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLV-NILEHPQCRADYSLTSHQAI 1540 (1890)
Q Consensus 1464 -~~~~v~~~aa~~l~~L-~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~-nl~~~~~~~~~~~~~~~~~i 1540 (1890)
++...|..++..+..- .+...- ....+...+...++-|++=...+..+ .|+.+|. .|..+..-+..+ ..+.+
T Consensus 1015 WPd~~~Cr~AA~~LA~rLa~ep~L-~~amdaQ~lan~LNALSKWPde~~Cr-~Aa~aLA~rL~~d~~Lr~Al---~aQ~v 1089 (2710)
T PRK14707 1015 WLQMPVCAATVEALAARLSNDPGL-CKALSSQGLTTVLNALCKWPEMPVCL-AAASALAERLSDDLVLRNAL---DSQGF 1089 (2710)
T ss_pred CCCchHHHHHHHHHHHHhccCHhh-hhhcchHHHHHHHHhhccCCCchhHH-HHHHHHHHHhhccHHHHHhh---chHHH
Confidence 3444566666655322 111111 12223445555666666521122233 3455554 455555555543 45555
Q ss_pred hhhhhccC--CCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHH-HHHhccChhH-HHh
Q 000184 1541 EPLIPLLD--SPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKAL-VSIALTWPNE-IAK 1616 (1890)
Q Consensus 1541 ~~Lv~lL~--s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL-~~l~~~~~~~-l~~ 1616 (1890)
...+.-|. .+.+..+..+...-..++.+......+...++-..|-.+-+....+.-..|+..| +.+..++.-+ -.+
T Consensus 1090 AN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~ 1169 (2710)
T PRK14707 1090 GNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALS 1169 (2710)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcC
Confidence 56666565 6677788888888888888777776666655444444444544444444444444 4555544222 112
Q ss_pred hcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcc---cch----HHHHHhhccC--Chh-HHHHHHHHHHH
Q 000184 1617 EGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLE---VPV----AVLVRLLRSG--SEG-TVIGSLNALLV 1686 (1890)
Q Consensus 1617 ~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~---~~v----~~Lv~ll~~~--~~~-v~~~a~~aL~~ 1686 (1890)
.-.|...++.+.. -.....|..+...|..-.+....-++. ..+ -.+-++...+ |.+ ....+..-|..
T Consensus 1170 ~Q~vAn~LNaLSK---Wp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sRl~~~~~ed~~~~~~~a~~~L~~ 1246 (2710)
T PRK14707 1170 AQGVAIALNALSK---CLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSRLSPLDEEDDEQFRTLAVAKLQA 1246 (2710)
T ss_pred HHHHHHHHHHhhc---CcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH
Confidence 2123333333332 111233444555554444333332222 112 2223333222 222 23334444555
Q ss_pred hhcCChhhH--HHHHHcccHHHHHHHHcc----CCcHHHHHHH---HHHHhhchhhhhhhhc
Q 000184 1687 LESDDGTSA--EAMAESGAIEALLELLRS----HQCEETAARL---LEVLLNNGKIRESKAT 1739 (1890)
Q Consensus 1687 L~~~~~~~~--~~i~~~g~i~~Li~lL~~----~~~~~~a~~a---l~~L~~~~~~r~~i~~ 1739 (1890)
|...=...+ ..=.+.+.|-.|.+-|.+ ...+-.+.-+ +.+|+.+..+|++-++
T Consensus 1247 LA~HL~l~~erfe~A~~~~I~~lFKAlasa~L~~~lr~La~~~L~Rl~~L~~~t~lR~~~LE 1308 (2710)
T PRK14707 1247 MAGHLDLHRELFASASVADIGVLFKALASARLQRQMRSLGQPALERVSALIGDDGLRQTSLE 1308 (2710)
T ss_pred HHHHHhhcHHHHhhccchhHHHHHHHHHhhhchhhhhhhhHHHHHHHHHHhcccCCCCCcHH
Confidence 544333333 333344667777777766 1233343333 4444556666665555
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=4.7e-06 Score=102.65 Aligned_cols=375 Identities=18% Similarity=0.185 Sum_probs=252.3
Q ss_pred cchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHH
Q 000184 237 ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALAN 316 (1890)
Q Consensus 237 ~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~n 316 (1890)
...|+.|+.-+.+..-.+-|+.|+..|..++.. .|. -+.+-|+++|+..|... ..+++....++.++++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---YR~-~Vga~Gmk~li~vL~~D-------~~D~E~ik~~LdTl~i 89 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---YRE-EVGAQGMKPLIQVLQRD-------YMDPEIIKYALDTLLI 89 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---HHH-HHHHcccHHHHHHHhhc-------cCCHHHHHHHHHHHHH
Confidence 345778887777766678899999999999873 333 45667899999999774 3468999999999999
Q ss_pred hhCCCc-hhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHH
Q 000184 317 ISGGLS-NVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALA 395 (1890)
Q Consensus 317 l~~~~~-~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~ 395 (1890)
+..... +.+.. ++. +..+ +-.+-+..
T Consensus 90 l~~~dd~~~v~d------ds~---qsdd------------------------------------------~g~~iae~-- 116 (970)
T KOG0946|consen 90 LTSHDDSPEVMD------DST---QSDD------------------------------------------LGLWIAEQ-- 116 (970)
T ss_pred HHhcCcchhhcc------cch---hhhH------------------------------------------HHHHHHHH--
Confidence 876321 00000 000 0000 00111111
Q ss_pred HhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhhHHHHh-cCcHHHHHHhhCCCCHHHHHHH
Q 000184 396 SLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNN-EGSLWRALQG-REGIQLLISLLGLSSEQQQECS 473 (1890)
Q Consensus 396 ~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A 473 (1890)
.+-..+.|..++..+...|..||..++..|.++-+. +.+.+.++.. --||..|+.+|.+..+.+|..+
T Consensus 117 ----------fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~ 186 (970)
T KOG0946|consen 117 ----------FIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEA 186 (970)
T ss_pred ----------HHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhH
Confidence 122356778888889888999999999999986554 3445566554 4589999999999999999999
Q ss_pred HHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC----CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhc-
Q 000184 474 VALLCLLSNENDDSKWAITAAGGIPPLVQILESG----SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN- 548 (1890)
Q Consensus 474 ~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~- 548 (1890)
.-.|+.|+++++..++.++=.++...|..+++.. ..-+.+.|...|.||-..+..++..+.+.+-||.|..+|..
T Consensus 187 iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f 266 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVF 266 (970)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcc
Confidence 9999999998777777777788999999999754 23578999999999999888999999999999999988864
Q ss_pred --CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhc
Q 000184 549 --GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS 626 (1890)
Q Consensus 549 --~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~ 626 (1890)
++.++-.-+..-..|+-. .-+++..+-++...+ . ...-.++.+...+++..|..++.
T Consensus 267 ~~~d~Ev~~W~~Qrv~Nv~~------~Lqivr~lVsP~Nt~--~-------------~~~q~qk~l~ss~ll~~Lc~il~ 325 (970)
T KOG0946|consen 267 EFGDGEVFGWSTQRVQNVIE------ALQIVRSLVSPGNTS--S-------------ITHQNQKALVSSHLLDVLCTILM 325 (970)
T ss_pred cccCcccccccHHHHHHHHH------HHHHHHHhcCCCCcH--H-------------HHHHHHHHHHHcchHHHHHHHHc
Confidence 221111000000111100 001111111111110 0 00113455667888999999887
Q ss_pred CC--CHHHHHHHHHHHHHHhhcChhHHHHHHHcCc------hHHHHHhh-----cCCCHHHHHHHHHHHHHHHccCchhh
Q 000184 627 ST--KEETQAKSASALAGIFETRKDLRESSIAVKT------LWSVMKLL-----DVGSECILVEASRCLAAIFLSVRENR 693 (1890)
Q Consensus 627 s~--~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~------i~~Lv~lL-----~~~~~~v~~~a~~aL~~L~~~~~~~~ 693 (1890)
++ ..+++..+.-++++..+++..+++.+....+ .|.++-++ .......+.+++.++.++...+.+.+
T Consensus 326 ~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 326 HPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred CCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence 65 5678999999999999998888887775443 22333332 34556788889999999987765544
Q ss_pred HHHHHhCCChHHHHHHhCC
Q 000184 694 EVAAVARDALSPLVVLAGS 712 (1890)
Q Consensus 694 ~~~~~~~~~v~~Lv~ll~~ 712 (1890)
+. ++..++..-.+
T Consensus 406 ~~------~l~tllp~~~n 418 (970)
T KOG0946|consen 406 RK------FLKTLLPSSTN 418 (970)
T ss_pred HH------HHHHHhhhhcc
Confidence 44 45555554443
No 51
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.4e-06 Score=105.82 Aligned_cols=253 Identities=16% Similarity=0.123 Sum_probs=193.9
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHH-hhccCchhhHHHHhcCcHHHHHHhhCCC-CHHHHHHHHHHHHHcccCChhcHH
Q 000184 413 KRLLVGLITMA-TNEVQEELVRALLK-LCNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSKW 489 (1890)
Q Consensus 413 i~~Lv~lL~~~-~~~v~~~a~~aL~~-L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~ 489 (1890)
++.|+.-|+.. |+..|..++.-|.. |...+++.-.-+--.-.+|.|+.+|++. +.++...|+++|.+|+..-|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 44555666544 77777777766654 4444433222222223579999999974 899999999999999988889999
Q ss_pred HHHhcCCcHHHHHhccC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000184 490 AITAAGGIPPLVQILES-GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 568 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~-~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~ 568 (1890)
.++++++||.|+.-|.. ..-++-|+++.+|..|+.. .-..++++|++...+..+.--+-.+++.|..+-.|+|..-
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999976654 4678999999999999973 3456789999999999998888899999999999999753
Q ss_pred CC-------CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhc-CchHHHHHhhhhcchHHHHHHHhcCC----CHHHHHHH
Q 000184 569 DT-------ATISQLTALLTSDLPESKVYVLDALKSMLSVV-SFSDILREGSAANDAVETMIKILSST----KEETQAKS 636 (1890)
Q Consensus 569 ~~-------~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~~~~~~~i~~Lv~lL~s~----~~~~~~~A 636 (1890)
.+ +++|.|..+|...+....+++..|+..+..-. ..++.++. +...+-|....+|+.-. +..+..--
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdq-l~s~dLi~~~~qLlsvt~t~Ls~~~~~~v 404 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQ-LCSHDLITNIQQLLSVTPTILSNGTYTGV 404 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHH-HhchhHHHHHHHHHhcCcccccccchhHH
Confidence 22 66788888888888888899998888877643 45555554 44677788888887543 34456667
Q ss_pred HHHHHHHhhcChhHHHHHHHcCchHHHHHhhcC
Q 000184 637 ASALAGIFETRKDLRESSIAVKTLWSVMKLLDV 669 (1890)
Q Consensus 637 ~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~ 669 (1890)
.+.|..+|.+++.........++...|..++..
T Consensus 405 Irmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 405 IRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred HHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 788889999888877778889999999888843
No 52
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.8e-06 Score=102.54 Aligned_cols=419 Identities=14% Similarity=0.110 Sum_probs=262.6
Q ss_pred HHHHHhhcC-CCHHHHHHHHHHHHHHh-hcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHH
Q 000184 199 DILVKLLTL-GQSSTQAHVCFLLACMM-EEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARRE 276 (1890)
Q Consensus 199 ~~Lv~lL~~-~~~~v~~~a~~~L~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~ 276 (1890)
..|+.-|.. +++..+..++.-|+.+. .++++...-|--.-.+|.|+.+|+..+..+++..|+++|.+|+.--|.....
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 344444443 36666666666666543 5555555544445678999999999888899999999999999988888899
Q ss_pred HHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhc
Q 000184 277 IAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 356 (1890)
Q Consensus 277 i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~ 356 (1890)
+++.++||.|+.-|..=. --++-|.++.||-.|+...+
T Consensus 250 vV~~~aIPvl~~kL~~Ie--------yiDvAEQ~LqALE~iSR~H~---------------------------------- 287 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIE--------YIDVAEQSLQALEKISRRHP---------------------------------- 287 (1051)
T ss_pred eecccchHHHHHhhhhhh--------hhHHHHHHHHHHHHHHhhcc----------------------------------
Confidence 999999999988775421 12345555555555443111
Q ss_pred ccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 000184 357 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALL 436 (1890)
Q Consensus 357 ~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 436 (1890)
+.+.++|++...+..+..=+..+|+.|+..-.
T Consensus 288 ------------------------------------------------~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 288 ------------------------------------------------KAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred ------------------------------------------------HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13345666666666666556788899998889
Q ss_pred HhhccCc-hhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccC---ChhcHHHHHhcCCcHHHHHhccCC----C
Q 000184 437 KLCNNEG-SLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNE---NDDSKWAITAAGGIPPLVQILESG----S 508 (1890)
Q Consensus 437 ~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~---~~~~~~~i~~~g~i~~Lv~lL~~~----~ 508 (1890)
|.|..-. +....+. +++|.|-.+|...+.+..+.++-+++.++.+ .++.-+.+...|.|....+|+.-. +
T Consensus 320 N~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls 397 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILS 397 (1051)
T ss_pred HHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccc
Confidence 9886522 2233444 6899999999999999999999998888743 345567788899999999988754 3
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCC--------------hhHHHHHHHHHHHHhcCCCCC---
Q 000184 509 AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS--------------ANGKEIAAKTLNHLIHKSDTA--- 571 (1890)
Q Consensus 509 ~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~--------------~~~~~~Aa~aL~~L~~~~~~~--- 571 (1890)
..+....+..|..+|..++..+....+.++...|-.+|...+ |.-.-.-...+..|....+.+
T Consensus 398 ~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~ 477 (1051)
T KOG0168|consen 398 NGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIF 477 (1051)
T ss_pred ccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCccccee
Confidence 345556778888888877888888888888888888887532 111111111111111000000
Q ss_pred --------------------------cHHH----HHHHHh--cCCcchHHHHHHHHH---HHhhhcCchHHHHHhhhhcc
Q 000184 572 --------------------------TISQ----LTALLT--SDLPESKVYVLDALK---SMLSVVSFSDILREGSAAND 616 (1890)
Q Consensus 572 --------------------------~i~~----L~~lL~--~~~~~~~~~a~~aL~---~L~~~~~~~~~~~~~~~~~~ 616 (1890)
.++. ...++. .++++......+-+. .-..+.+.++..+..+ ..
T Consensus 478 ~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~--~~ 555 (1051)
T KOG0168|consen 478 AVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFG--KD 555 (1051)
T ss_pred ehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHH--HH
Confidence 0000 111111 001110000000000 0112345566655544 45
Q ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcC--hhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhh
Q 000184 617 AVETMIKILSS-TKEETQAKSASALAGIFETR--KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 693 (1890)
Q Consensus 617 ~i~~Lv~lL~s-~~~~~~~~A~~aL~~L~~~~--~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 693 (1890)
-+|.|++...+ .++.+|+.+..+|..+.... +.++..+.....-..+--.|.+.+..+...|++...-|+..-++.-
T Consensus 556 llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F 635 (1051)
T KOG0168|consen 556 LLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTF 635 (1051)
T ss_pred HHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHh
Confidence 68999998865 59999999999999887543 2333333334444455555677777777777777776665555544
Q ss_pred HHHHHhCCChHHHHHHhC
Q 000184 694 EVAAVARDALSPLVVLAG 711 (1890)
Q Consensus 694 ~~~~~~~~~v~~Lv~ll~ 711 (1890)
-..+..+|++-.+-+|..
T Consensus 636 ~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 636 SPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred hhhHhhhhHHHHHHHHhc
Confidence 444566666665555554
No 53
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.73 E-value=4.9e-07 Score=111.28 Aligned_cols=252 Identities=23% Similarity=0.229 Sum_probs=200.6
Q ss_pred CchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHH
Q 000184 1369 RCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEM 1448 (1890)
Q Consensus 1369 ~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l 1448 (1890)
..++.++..+.+.+..+|..++.+++.+. ..-++++|..++.+.++.+|..|+.+|+++....
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELGDPE------- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh-------
Confidence 46788899999999999999999988875 2346899999999999999999999999999876
Q ss_pred HHcCcHHHHHHHhc-cCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccC----------CChhhHHHHHH
Q 000184 1449 VKAGVIESVLDILH-EAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE----------FGPDGQHSALQ 1517 (1890)
Q Consensus 1449 ~~~~~i~~L~~lL~-~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~----------~~~~v~~~al~ 1517 (1890)
.++.|+++|. +++..++..++.+++.+.... .+.+|+..+.+.. ....+|..++.
T Consensus 106 ----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 106 ----AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred ----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 8899999998 577888998998887664433 3899999998744 11257888889
Q ss_pred HHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHH
Q 000184 1518 VLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQ 1597 (1890)
Q Consensus 1518 aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~ 1597 (1890)
+|..+ .....++.+..++.+++..+|..|+.+|+.+.... ......+...+.+++..+|.
T Consensus 172 ~l~~~------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~ 231 (335)
T COG1413 172 ALGEL------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRK 231 (335)
T ss_pred HHHHc------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHH
Confidence 99888 88889999999999999999999999999988632 34568899999999999999
Q ss_pred HHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHH
Q 000184 1598 RAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTV 1677 (1890)
Q Consensus 1598 ~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~ 1677 (1890)
.++.+|+.++... .++.+.+.+.+.+..++..... .+... -.....+.+...+.+.++.++
T Consensus 232 ~~~~~l~~~~~~~--------~~~~l~~~l~~~~~~~~~~~~~----~~~~~-------~~~~~~~~l~~~~~~~~~~~~ 292 (335)
T COG1413 232 AALLALGEIGDEE--------AVDALAKALEDEDVILALLAAA----ALGAL-------DLAEAALPLLLLLIDEANAVR 292 (335)
T ss_pred HHHHHhcccCcch--------hHHHHHHHHhccchHHHHHHHH----Hhccc-------CchhhHHHHHHHhhcchhhHH
Confidence 9999999998754 3577777888766533322111 11111 112357788888888899999
Q ss_pred HHHHHHHHHhhcC
Q 000184 1678 IGSLNALLVLESD 1690 (1890)
Q Consensus 1678 ~~a~~aL~~L~~~ 1690 (1890)
..+..++......
T Consensus 293 ~~~~~~l~~~~~~ 305 (335)
T COG1413 293 LEAALALGQIGQE 305 (335)
T ss_pred HHHHHHHHhhccc
Confidence 9998888887754
No 54
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.2e-06 Score=107.02 Aligned_cols=377 Identities=16% Similarity=0.098 Sum_probs=252.0
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHH
Q 000184 369 IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 448 (1890)
Q Consensus 369 ~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 448 (1890)
.++..+..-+...+.. +|+....+|..+.-..+. .....+.+.+.+++...+...+..+...++.+..+. ....
T Consensus 96 ~~~~~~~~~~~tps~~-~q~~~~~~l~~~~~~~~~---~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~ 169 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKS-VQRAVSTCLPPLVVLSKG---LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIES 169 (569)
T ss_pred HHHHHHHHhcCCCcHH-HHHHHHHHhhhHHHHhhc---cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhh
Confidence 4556666666655544 587777777766322221 111234566788888888888999999998887753 3455
Q ss_pred HHhcCcHHHHHHhhCCCCHHHHHH-HH----HHHHHcccCChhcHHHHHhcCCcHHHHHh---ccCCCHHHHHHHHHHHH
Q 000184 449 LQGREGIQLLISLLGLSSEQQQEC-SV----ALLCLLSNENDDSKWAITAAGGIPPLVQI---LESGSAKAKEDSASILR 520 (1890)
Q Consensus 449 i~~~g~i~~Lv~lL~~~~~~v~~~-A~----~aL~nL~~~~~~~~~~i~~~g~i~~Lv~l---L~~~~~~~~e~a~~aL~ 520 (1890)
+.+.+.+..|-...++.....+.+ +. ..-.+|... .+.+.++.+-.+ ..+..+.+|+.|..+..
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~--------~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~k 241 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP--------FEPYIVPILPSILTNFGDKINKVREAAVEAAK 241 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC--------CCchHHhhHHHHHHHhhccchhhhHHHHHHHH
Confidence 566677888888888765544443 22 222333321 122344444444 45567788887777666
Q ss_pred HHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-------CCcHHHHHHHHhcCCcchHHHHHH
Q 000184 521 NLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-------TATISQLTALLTSDLPESKVYVLD 593 (1890)
Q Consensus 521 ~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~-------~~~i~~L~~lL~~~~~~~~~~a~~ 593 (1890)
.+-..-+...- .-.+|+++.-+....++.+..+...|..++.+.+ +..+|.+.+.|.+.+++++..+.+
T Consensus 242 ai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~ 317 (569)
T KOG1242|consen 242 AIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIE 317 (569)
T ss_pred HHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHH
Confidence 55543211110 1234666655555578899999999999988765 578888999999999999999999
Q ss_pred HHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHH
Q 000184 594 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSEC 673 (1890)
Q Consensus 594 aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 673 (1890)
++..++.+..++++ +.. +|.|++.+.+++..+.+. ...|..-.-- ...+...-+-.+|.|.+-+...+..
T Consensus 318 ~l~~~~svidN~dI-~~~------ip~Lld~l~dp~~~~~e~-~~~L~~ttFV--~~V~~psLalmvpiL~R~l~eRst~ 387 (569)
T KOG1242|consen 318 TLLKFGSVIDNPDI-QKI------IPTLLDALADPSCYTPEC-LDSLGATTFV--AEVDAPSLALMVPILKRGLAERSTS 387 (569)
T ss_pred HHHHHHHhhccHHH-HHH------HHHHHHHhcCcccchHHH-HHhhcceeee--eeecchhHHHHHHHHHHHHhhccch
Confidence 99999998887873 332 899999998877544332 2222211111 0111122334578888888888888
Q ss_pred HHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhc
Q 000184 674 ILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE 753 (1890)
Q Consensus 674 v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~ 753 (1890)
+.+.++..+.|++.-.++.+.....-...+|.|-..+.++.+|+|..++.||+.+.-+-.... . .+.++.+.+..++
T Consensus 388 ~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~--f-~d~~p~l~e~~~~ 464 (569)
T KOG1242|consen 388 IKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVS--F-DDLIPELSETLTS 464 (569)
T ss_pred hhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhc--c-cccccHHHHhhcc
Confidence 999999999999988766666644445566666677788899999999999998873322211 1 7888899999988
Q ss_pred CCcc-hHHHHHHHHHHHhhcCccc
Q 000184 754 GTIS-GKTLAAAAIARLLHSRKID 776 (1890)
Q Consensus 754 ~~~~-~~~~aa~aL~~L~~~~~~~ 776 (1890)
+... .+..++..|..........
T Consensus 465 ~k~~~~~~g~aq~l~evl~~~~v~ 488 (569)
T KOG1242|consen 465 EKSLVDRSGAAQDLSEVLAGLGVE 488 (569)
T ss_pred chhhhhhHHHhhhHHHHHhcccch
Confidence 8877 6778888988888655543
No 55
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.70 E-value=1.5e-06 Score=106.96 Aligned_cols=278 Identities=27% Similarity=0.255 Sum_probs=206.8
Q ss_pred CcHHHHHHHHhcCCcchhHHHHHHHHHHhhcCHHHHHhhhhcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhh
Q 000184 1200 GALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAE 1279 (1890)
Q Consensus 1200 g~l~~Lv~~L~~~~~~~q~~a~~~ll~~l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i 1279 (1890)
..++.+..++.+.+..++..++..+. .+...-+++++..+|.+.+..+|..|+.+|+.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~-----------~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~---------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALG-----------ELGSEEAVPLLRELLSDEDPRVRDAAADALGEL---------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHh-----------hhchHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------
Confidence 36788888888875555555544433 334556899999999999999999999999874
Q ss_pred hhcCChHHHHHHhc-cCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCCh-----------hhHHH
Q 000184 1280 SARQAVQPLVEILN-TGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSM-----------ELKGD 1347 (1890)
Q Consensus 1280 ~~~~~i~~Lv~lL~-~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~-----------~~~~~ 1347 (1890)
+...++++|+..|. +.+..+|..|+++|+.+.. ..++.+|+..+.+.... .++..
T Consensus 102 ~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~ 168 (335)
T COG1413 102 GDPEAVPPLVELLENDENEGVRAAAARALGKLGD-------------ERALDPLLEALQDEDSGSAAAALDAALLDVRAA 168 (335)
T ss_pred CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------------hhhhHHHHHHhccchhhhhhhhccchHHHHHHH
Confidence 55667999999999 6889999999999999985 34688888888764311 23333
Q ss_pred HHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHH
Q 000184 1348 AAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLH 1427 (1890)
Q Consensus 1348 a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr 1427 (1890)
+...+. .+.....++.++.++.+.+..+|..|+.+|+.+..+. ..+...+...+.+++..+|
T Consensus 169 a~~~l~----------~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr 230 (335)
T COG1413 169 AAEALG----------ELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVR 230 (335)
T ss_pred HHHHHH----------HcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHH
Confidence 334433 3456678899999999999999999999999997443 2356788899999999999
Q ss_pred HHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCC
Q 000184 1428 EAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEF 1507 (1890)
Q Consensus 1428 ~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~ 1507 (1890)
..++.+|+.++... .++.+...+.+++..+...++...... .......++...+.+.+
T Consensus 231 ~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~- 288 (335)
T COG1413 231 KAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALGAL----------DLAEAALPLLLLLIDEA- 288 (335)
T ss_pred HHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhccc----------CchhhHHHHHHHhhcch-
Confidence 99999999999887 778999999888876666555444210 01223566666676655
Q ss_pred ChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHH
Q 000184 1508 GPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSH 1564 (1890)
Q Consensus 1508 ~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~ 1564 (1890)
..++..+..++... ........+....++.+..++..+...+..
T Consensus 289 -~~~~~~~~~~l~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 332 (335)
T COG1413 289 -NAVRLEAALALGQI------------GQEKAVAALLLALEDGDADVRKAALILLEG 332 (335)
T ss_pred -hhHHHHHHHHHHhh------------cccchHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 66777677777766 555666777777778877777777766553
No 56
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.69 E-value=0.00071 Score=80.95 Aligned_cols=612 Identities=14% Similarity=0.096 Sum_probs=317.7
Q ss_pred ChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCC--HHHHHHHHHHHHH-hh-ccchhhHHHHhc--C--
Q 000184 35 SVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGS--LAVKIQAATVLGS-LC-KENELRVKVLLG--G-- 106 (1890)
Q Consensus 35 ~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~--~~~~~~aa~~L~~-L~-~~~~~~~~i~~~--g-- 106 (1890)
++--|..|-..|.++++.. .. +.+..+++.|.+.+ +..|+-+.-+|-+ +. +++..+...... |
T Consensus 18 D~n~rl~aE~ql~~l~~~d--F~-------qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~ 88 (858)
T COG5215 18 DPNARLRAEAQLLELQSGD--FE-------QFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMR 88 (858)
T ss_pred CCCccccHHHHHHHhcccc--HH-------HHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCC
Confidence 3344556666666666532 11 33445666665443 4666666666666 22 222222211111 1
Q ss_pred ------ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhc-cCCCCch-HHHHHHHHH
Q 000184 107 ------CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKN-GLKSGNV-VDNLLTGAL 178 (1890)
Q Consensus 107 ------~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~-~~~~~~~-v~~~~~~~L 178 (1890)
.-...++-|++..+.....|+.++..++.... ..|.-|-|.+.+.. ...+.|+ .....++++
T Consensus 89 ~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~El----------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~ 158 (858)
T COG5215 89 HESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMEL----------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGIC 158 (858)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhC----------ccccchHHHHHHHHhccccCchHhHHHHHHHH
Confidence 01234556677777777788888888877332 34556777666543 2333343 667888999
Q ss_pred HHhccCChhHHHHHHhcCC-HHHHH-HhhcC-CCHHHHHHHHHHHHH-HhhcCchhhhHhhccchHHHHHHH---HcCCC
Q 000184 179 RNLSTSTEGFWAATVQAGG-IDILV-KLLTL-GQSSTQAHVCFLLAC-MMEEDVSVCSRVLAADATKQLLKL---LGSGN 251 (1890)
Q Consensus 179 ~~L~~~~~~~~~~i~~~g~-v~~Lv-~lL~~-~~~~v~~~a~~~L~~-L~~~~~~~~~~i~~~g~i~~Lv~l---L~~~~ 251 (1890)
+++|.+.+. ...+-..+. +-.++ .-++. ++..+|..+.++|.. +..- +..+..++-...+++. ..+++
T Consensus 159 gy~ces~~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv----~~nf~~E~erNy~mqvvceatq~~ 233 (858)
T COG5215 159 GYHCESEAP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV----QGNFCYEEERNYFMQVVCEATQGN 233 (858)
T ss_pred HHHhhccCH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH----HHhhcchhhhchhheeeehhccCC
Confidence 999966543 111222222 22222 23333 567788889998876 3321 1122222223333322 23456
Q ss_pred CHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhcc
Q 000184 252 EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQS 331 (1890)
Q Consensus 252 ~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~ 331 (1890)
|.+++..|-+||..+-.-..+--+...+.--.....+.+.+++ .++.-.++.--.-+|.
T Consensus 234 d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n---------d~va~qavEfWstice------------ 292 (858)
T COG5215 234 DEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN---------DEVAIQAVEFWSTICE------------ 292 (858)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---------hHHHHHHHHHHHHHHH------------
Confidence 8899999999998876532221111111111111122222221 1111112111111111
Q ss_pred ccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcC
Q 000184 332 LESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE 411 (1890)
Q Consensus 332 ~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g 411 (1890)
. .+.-.+..-.-+..+ ++|.. ...-.-.+
T Consensus 293 -------------------------E-----------eid~~~e~~~~pe~p--------------~qn~~-fa~aav~d 321 (858)
T COG5215 293 -------------------------E-----------EIDGEMEDKYLPEVP--------------AQNHG-FARAAVAD 321 (858)
T ss_pred -------------------------H-----------HhhhHHHHhhcccCc--------------hhhcc-hHHHHHHH
Confidence 0 000000000000000 00000 00111124
Q ss_pred cHHHHHHHhcC-------CCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCC
Q 000184 412 AKRLLVGLITM-------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEN 484 (1890)
Q Consensus 412 ~i~~Lv~lL~~-------~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 484 (1890)
.+|.|+.+|.. +++.+...|..||.-.+....+ .|.. ..+..+-+-+++++..-++.|+.+++.+-.+.
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 56666776642 3456777777777655433211 2221 13333344567788999999999999987543
Q ss_pred hhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhc---CChhHHHHHHHHH
Q 000184 485 DDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---GSANGKEIAAKTL 561 (1890)
Q Consensus 485 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~---~~~~~~~~Aa~aL 561 (1890)
.+....-.-..++|.+.....++.-.+++.++|+++.++.+.+ ..|-..|-+++.+..+-- .+|....+..|..
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va---~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~ 474 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA---MIISPCGHLVLEVSASLIGLMDCPFRSINCSWRK 474 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH---HhcCccccccHHHHHHHhhhhccchHHhhhHHHH
Confidence 3333333335689999999998888999999999999997533 233335555555543332 3577788889999
Q ss_pred HHHhcCCCC----------CcHHHHHHHH------hcCCcchHHHHHHHHHHHhhhcCchH--HHHHhhhh------cch
Q 000184 562 NHLIHKSDT----------ATISQLTALL------TSDLPESKVYVLDALKSMLSVVSFSD--ILREGSAA------NDA 617 (1890)
Q Consensus 562 ~~L~~~~~~----------~~i~~L~~lL------~~~~~~~~~~a~~aL~~L~~~~~~~~--~~~~~~~~------~~~ 617 (1890)
.||..|-.+ .-.+.++.-| ...+...+..+..+|+.|....+..- ++. ++.+ ...
T Consensus 475 ~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a-~~~~~~~~kl~~~ 553 (858)
T COG5215 475 ENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA-GFYDYTSKKLDEC 553 (858)
T ss_pred HhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHHHHHH
Confidence 999876432 1122222221 23334567778888888766554331 110 0000 111
Q ss_pred HHHHHHHhcCC----CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHH-HHHHHHHHHHHHHccCchh
Q 000184 618 VETMIKILSST----KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSEC-ILVEASRCLAAIFLSVREN 692 (1890)
Q Consensus 618 i~~Lv~lL~s~----~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~-v~~~a~~aL~~L~~~~~~~ 692 (1890)
+..+-+.+... .++++.+-+..|..+.+.++.-.+ -+..-.+..+++++.+.++. +-.....++.+|+.+- .
T Consensus 554 isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie-~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl--~ 630 (858)
T COG5215 554 ISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE-DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL--E 630 (858)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH--H
Confidence 22222222222 356777777777777765432111 11222455667777665433 3445666777776543 2
Q ss_pred hHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh--cCchHHHHHHhcCcHHHHHHHHhcCC
Q 000184 693 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI--LDSEVSEKAIAEEIILPATRVLCEGT 755 (1890)
Q Consensus 693 ~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~--~~~~~~~~~~~~~~v~~L~~ll~~~~ 755 (1890)
.+........+|.|.+-|+..+..+-..+..-++.|+ .+.+.. .........|+.++++..
T Consensus 631 e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~--~y~d~~ms~LvQ~lss~~ 693 (858)
T COG5215 631 ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFN--IYADVLMSSLVQCLSSEA 693 (858)
T ss_pred HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcChh
Confidence 2333455788999999998888778888888887776 222222 223455566666666543
No 57
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.0032 Score=79.79 Aligned_cols=542 Identities=15% Similarity=0.143 Sum_probs=315.0
Q ss_pred HHHHHHhcCCHHHHHHhhcC----------C-CH--HHHHHHHHHHHHHhhcCchhhhHhhc-cchHHHHHHHHcCCCCH
Q 000184 188 FWAATVQAGGIDILVKLLTL----------G-QS--STQAHVCFLLACMMEEDVSVCSRVLA-ADATKQLLKLLGSGNEA 253 (1890)
Q Consensus 188 ~~~~i~~~g~v~~Lv~lL~~----------~-~~--~v~~~a~~~L~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~ 253 (1890)
+...++..||++.|..+++. + ++ .+-.+.+.++. .+...+..++.+.+ ...|..++.++.-++-+
T Consensus 1419 NaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~S-VaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vP 1497 (2235)
T KOG1789|consen 1419 NAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFS-VAAQFEACRQRLMEMPSIIGDLTRLLQFSNLP 1497 (2235)
T ss_pred CHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHhcccc
Confidence 44557889999999998863 2 22 33456667764 34555656666665 45567777777666556
Q ss_pred hHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCC---cc-ccchhh-------hHHHHHHHHHHHHHhhCCCc
Q 000184 254 SVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPS---KE-FMQGEY-------AQALQENAMCALANISGGLS 322 (1890)
Q Consensus 254 ~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~---~~-~~~~~~-------~~~l~e~a~~aL~nl~~~~~ 322 (1890)
.+...++.+++..+. ++..+-.+.++|.+=-|+.+|..-+ .| ..++++ ...+-..++.+|.++.+-
T Consensus 1498 r~~~aa~qci~~~aV-d~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~-- 1574 (2235)
T KOG1789|consen 1498 RLSTAAAQCIRAMAV-DTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGF-- 1574 (2235)
T ss_pred HHHHHHHHHHHHHhh-hHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcc--
Confidence 678888899999988 6888999999999887777775433 11 112222 233344466777776651
Q ss_pred hhhhhhhccccCCCChhhhhhhHhHHHHHH-HHhcccccCCCCCChhhhHHHHHhhcCCCC--ChH-----H--------
Q 000184 323 NVISSLGQSLESCSSPAQVADTLGALASAL-MIYDSKAESTKPSDPLIVEQTLVNQFKPRL--PFL-----V-------- 386 (1890)
Q Consensus 323 ~~i~~l~~~~~~~~~~~~~~~~~gal~~ll-~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~--~~~-----~-------- 386 (1890)
.++-...|.+...-....|-+.+.+ ..++ .....-+.+.+.+.. +.. .
T Consensus 1575 -----~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk-----------~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFv 1638 (2235)
T KOG1789|consen 1575 -----RADEENTPDNDTVQASLRALLTPYIARCLK-----------LETNDMVLKTLNSNMENPYMIWNNGTRAELLEFV 1638 (2235)
T ss_pred -----ccccccCCCChhHHHHHHHhccHHHHHHHH-----------HHHHHHHHHHhhcCCCCceeeecCccHHHHHHHH
Confidence 1110111322221111112221111 1111 011122333333221 111 0
Q ss_pred -HHHHHHHHH---Hh-hC----CCcc-chh-----------------hhhc--------CcHHHHHHHhc--------C-
Q 000184 387 -QERTIEALA---SL-YG----NPLL-SIK-----------------LENS--------EAKRLLVGLIT--------M- 422 (1890)
Q Consensus 387 -~~~a~~aL~---~L-~~----~~~~-~~~-----------------l~~~--------g~i~~Lv~lL~--------~- 422 (1890)
+++++.+=. .+ +. .... +.. +.+. +.|...+.-+. +
T Consensus 1639 e~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~ 1718 (2235)
T KOG1789|consen 1639 ERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISD 1718 (2235)
T ss_pred HHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCcccccc
Confidence 122221100 00 00 0000 000 0000 11222222221 0
Q ss_pred ------------------CCHHHHHHHHHHHHHhhccCchhhHHH----HhcCcHHHHHHhhCC-CCHHHHHHHHHHHHH
Q 000184 423 ------------------ATNEVQEELVRALLKLCNNEGSLWRAL----QGREGIQLLISLLGL-SSEQQQECSVALLCL 479 (1890)
Q Consensus 423 ------------------~~~~v~~~a~~aL~~L~~~~~~~~~~i----~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~n 479 (1890)
++..-.+.++.+|.|+...+++...-+ .--|-.+.+...+.. .++.++.-|..++..
T Consensus 1719 d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~ 1798 (2235)
T KOG1789|consen 1719 DLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILL 1798 (2235)
T ss_pred chhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 011244678999999988777543322 112556777777764 577899999999998
Q ss_pred cccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhc-CChhHHHHHH
Q 000184 480 LSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAA 558 (1890)
Q Consensus 480 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~-~~~~~~~~Aa 558 (1890)
++. +.+....++..|.+..|+++|.+ .|..|+.+..+|+.|++ +++.-+...++|++..+..++-. .++..+..++
T Consensus 1799 ~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaA 1875 (2235)
T KOG1789|consen 1799 ATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAA 1875 (2235)
T ss_pred Hhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHH
Confidence 885 78889999999999999999875 46789999999999998 57888888899999888877655 5678888999
Q ss_pred HHHHHHhcCCC--CCc-------HHH-HHHHHhc-------------CCcch------HHHHHHHHHHHhh-hc------
Q 000184 559 KTLNHLIHKSD--TAT-------ISQ-LTALLTS-------------DLPES------KVYVLDALKSMLS-VV------ 602 (1890)
Q Consensus 559 ~aL~~L~~~~~--~~~-------i~~-L~~lL~~-------------~~~~~------~~~a~~aL~~L~~-~~------ 602 (1890)
..+.+|..+.- |.. +|. ++..+++ +.|+. +......+..+.. +.
T Consensus 1876 eLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~ 1955 (2235)
T KOG1789|consen 1876 ELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKD 1955 (2235)
T ss_pred HHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999976432 110 111 1222222 22221 1111111111110 00
Q ss_pred -----CchH-----------------HHHHhhhh------------cchHHHHHHHhcCCCHH--HHHHHHHHHHHHhhc
Q 000184 603 -----SFSD-----------------ILREGSAA------------NDAVETMIKILSSTKEE--TQAKSASALAGIFET 646 (1890)
Q Consensus 603 -----~~~~-----------------~~~~~~~~------------~~~i~~Lv~lL~s~~~~--~~~~A~~aL~~L~~~ 646 (1890)
+.++ ..|..+.. .+-+..+.++|...+++ .-.--..++..|.+.
T Consensus 1956 p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~ 2035 (2235)
T KOG1789|consen 1956 PTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRH 2035 (2235)
T ss_pred CcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHh
Confidence 0000 01111110 11133444455443332 333444566677777
Q ss_pred ChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000184 647 RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 726 (1890)
Q Consensus 647 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~ 726 (1890)
.+...+.+-..|.+|.++......+..+-+.+.+.|..++... .+-.++..-..+.+++..|+.... .-.-|+.+|-
T Consensus 2036 hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~--~C~~AMA~l~~i~~~m~~mkK~~~-~~GLA~Ealk 2112 (2235)
T KOG1789|consen 2036 HPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ--FCCDAMAQLPCIDGIMKSMKKQPS-LMGLAAEALK 2112 (2235)
T ss_pred CcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc--HHHHHHhccccchhhHHHHHhcch-HHHHHHHHHH
Confidence 7878788888899999999986666566688999999997553 444456777778888888765443 4458899999
Q ss_pred HHhc--CchHHHHHHhcCcHHHHHHHHhcCC
Q 000184 727 NLIL--DSEVSEKAIAEEIILPATRVLCEGT 755 (1890)
Q Consensus 727 nL~~--~~~~~~~~~~~~~v~~L~~ll~~~~ 755 (1890)
.++. ..+...|..+.+.++.|.+++....
T Consensus 2113 R~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2113 RLMKRNTGELVAQMLKCGLVPYLLQLLDSST 2143 (2235)
T ss_pred HHHHHhHHHHHHHHhccCcHHHHHHHhcccc
Confidence 9984 3456677889999999999997643
No 58
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.62 E-value=1.5e-05 Score=97.12 Aligned_cols=345 Identities=13% Similarity=0.082 Sum_probs=216.9
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHhhC-CCccchhhhh-----cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Q 000184 369 IVEQTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLEN-----SEAKRLLVGLITMATNEVQEELVRALLKLCNNE 442 (1890)
Q Consensus 369 ~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~l~~-----~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 442 (1890)
.....++.++...+...+.+..+.-+..+.. +|.....+.+ .....+.+.+|+.+|.-++..++..|..+.+.+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 3456677777766666667788887877744 4433333332 345566777898889999999999999987654
Q ss_pred chhhHHHHhcCcHHHHHHhhCCC-CHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC--CHHHHHHHHHHH
Q 000184 443 GSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASIL 519 (1890)
Q Consensus 443 ~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~e~a~~aL 519 (1890)
..........-..+-|...++++ +...+..++.+|..|.. .++.|..+.+.++++.|+.+|... +.+.+.+++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 33211110001223455556543 47778888999999985 788899999999999999999764 458889999999
Q ss_pred HHHhcCChHHHHHHHhCCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHH--HHHHHHhcCCcchHHHHHHHHH
Q 000184 520 RNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATIS--QLTALLTSDLPESKVYVLDALK 596 (1890)
Q Consensus 520 ~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~--~L~~lL~~~~~~~~~~a~~aL~ 596 (1890)
+-|+.. ++........+.|+.|+++++.. ..++.+-+..+|.||...+...... ....++..+ ....+.
T Consensus 212 WlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-------l~~~l~ 283 (429)
T cd00256 212 WLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-------VLKTLQ 283 (429)
T ss_pred HHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-------hHHHHH
Confidence 999984 55666666789999999999874 4678899999999998754211100 000011000 011111
Q ss_pred HHhhhc-CchHHHHHhhhhcchHHHHHHHhcCCCHH---HHHHHHHH-HHHHhhcChh--------HHHHHHHcC--chH
Q 000184 597 SMLSVV-SFSDILREGSAANDAVETMIKILSSTKEE---TQAKSASA-LAGIFETRKD--------LRESSIAVK--TLW 661 (1890)
Q Consensus 597 ~L~~~~-~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~---~~~~A~~a-L~~L~~~~~~--------~~~~~~~~g--~i~ 661 (1890)
+|.... +.+++... +..|-+.|...-.+ .-+..... -+.|.+++.. +...+.+.+ .+.
T Consensus 284 ~L~~rk~~DedL~ed-------l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk 356 (429)
T cd00256 284 SLEQRKYDDEDLTDD-------LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLK 356 (429)
T ss_pred HHhcCCCCcHHHHHH-------HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHH
Confidence 111111 12221111 22222222110000 00111111 1233333211 222222222 478
Q ss_pred HHHHhh-cCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000184 662 SVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 730 (1890)
Q Consensus 662 ~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~ 730 (1890)
.|+++| .+.++.+..-||.=++.++++.|. .|..+-+-|+=..+.++|.+++++||.+|..|+..|+.
T Consensus 357 ~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 357 ILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 899999 467788888899999999998874 44436678888888899999999999999999988763
No 59
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.58 E-value=0.00056 Score=83.92 Aligned_cols=566 Identities=13% Similarity=0.100 Sum_probs=299.8
Q ss_pred hHHHHHhhc----CCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhcc
Q 000184 108 IPPLLGLLK----SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLST 183 (1890)
Q Consensus 108 i~~Lv~lL~----~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~ 183 (1890)
+.+|++.+. .+...++.-++-+|..++....| -|.. .-..++.+||+-++..... .. ...+.+..-|+.
T Consensus 551 l~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P--ygie--~fDsVlkpLwkgir~hrgk--~l-aafLkAigylip 623 (1172)
T KOG0213|consen 551 LKPLVKIIEHGLKDEQQKVRTITALALSALAEAATP--YGIE--QFDSVLKPLWKGIRQHRGK--EL-AAFLKAIGYLIP 623 (1172)
T ss_pred hHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC--cchH--HHHHHHHHHHHHHHHccCh--HH-HHHHHHHhhccc
Confidence 344555444 45566677777777776662111 1111 2345677888888764332 22 234556666776
Q ss_pred CChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHH---
Q 000184 184 STEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAA--- 260 (1890)
Q Consensus 184 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa--- 260 (1890)
..+...........+-++++=-.+++.+.+...+.++.+.+..++ .-.+......+|.++...-.. +.|.
T Consensus 624 lmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~G-v~~~y~r~dilp~ff~~fw~r------rmA~drr 696 (1172)
T KOG0213|consen 624 LMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDG-VEPAYIRFDILPEFFFSFWGR------RMALDRR 696 (1172)
T ss_pred cccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC-CCHHHHhhhhhHHHHhhhhhh------hhhcccc
Confidence 555444434444456667777778999999999999988776555 445555566667666543221 1111
Q ss_pred --HHHHHhhhcCHHHHHHHHh-cCChHH---HHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccC
Q 000184 261 --GALKSLSDHCKDARREIAG-SNGIPA---MINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLES 334 (1890)
Q Consensus 261 --~aL~~Ls~~~~~~~~~i~~-~g~i~~---Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~ 334 (1890)
.-|... ...|.. -|.-+. ++.=+.+. .+.++.-.+.+..++-+.....
T Consensus 697 ~ykqlv~t-------tv~ia~KvG~~~~v~R~v~~lkde---------~e~yrkm~~etv~ri~~~lg~~---------- 750 (1172)
T KOG0213|consen 697 NYKQLVDT-------TVEIAAKVGSDPIVSRVVLDLKDE---------PEQYRKMVAETVSRIVGRLGAA---------- 750 (1172)
T ss_pred chhhHHHH-------HHHHHHHhCchHHHHHHhhhhccc---------cHHHHHHHHHHHHHHHhccccc----------
Confidence 001111 111111 222222 22222222 2334444444444433211000
Q ss_pred CCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHH
Q 000184 335 CSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKR 414 (1890)
Q Consensus 335 ~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~ 414 (1890)
.+.+.. ..--+..++.+|+..... +.+--..+.+..+-.. ...+..+ ...+.
T Consensus 751 -diderl--eE~lidgil~Afqeqtt~----------------------d~vml~gfg~V~~~lg-~r~kpyl--pqi~s 802 (1172)
T KOG0213|consen 751 -DIDERL--EERLIDGILYAFQEQTTE----------------------DSVMLLGFGTVVNALG-GRVKPYL--PQICS 802 (1172)
T ss_pred -cccHHH--HHHHHHHHHHHHHhcccc----------------------hhhhhhhHHHHHHHHh-hccccch--HHHHH
Confidence 000000 012233344444411110 0000011111111000 0001111 12344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCch--hhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHH
Q 000184 415 LLVGLITMATNEVQEELVRALLKLCNNEGS--LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 492 (1890)
Q Consensus 415 ~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~ 492 (1890)
.++..|+++++++|.+|+..+..++.--.. ..+.+...|. .|.+-|....+++.-...++++.+.....-.+..--
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pP 880 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPP 880 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCC
Confidence 566788999999999999988877643111 1122333333 467788888888887777776666532111110001
Q ss_pred hcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHH---HHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000184 493 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 493 ~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~---r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~ 569 (1890)
-.+.+|.|.-.|++...++++++...++.+|...++. |.-+ .+---|+++|+..+...++.|..+++.++..-.
T Consensus 881 i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 881 IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 2468899999999999999999999999999866552 1111 122457888999999999999999999987544
Q ss_pred C-CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCh
Q 000184 570 T-ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK 648 (1890)
Q Consensus 570 ~-~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~ 648 (1890)
| ..+..|++-|+...-..+....-+++.++.. ..-...+|.|..=-+.+...+|.-...+|+.++..-.
T Consensus 958 PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~----------c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 958 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAET----------CGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhh----------cCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHH
Confidence 3 2233344334333323333333333322211 1112236666665666788899988888888886422
Q ss_pred hHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHh-------CCCCHHHHHHH
Q 000184 649 DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA-------GSPVLEVAEQA 721 (1890)
Q Consensus 649 ~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll-------~~~~~ev~~~a 721 (1890)
+... =.-..+.|.|...|.+.+...+..++.++..|+-+.+ .-|..+.++.|| -.+++.++..-
T Consensus 1028 emsk-dYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa~ 1098 (1172)
T KOG0213|consen 1028 EMSK-DYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQAF 1098 (1172)
T ss_pred HHhh-hHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHHH
Confidence 1111 0112357777888889999889999999999987753 234444444444 24566666555
Q ss_pred HHHHHHHh--cCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCc
Q 000184 722 TCALANLI--LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 774 (1890)
Q Consensus 722 a~aL~nL~--~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~ 774 (1890)
..++..+. .++....+++-.+... ...--++.-|-..|.+..+.
T Consensus 1099 ~e~~eg~r~~Lg~~~~~~Y~~QGLFH---------ParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1099 DEAMEGLRVALGPQAMLKYCLQGLFH---------PARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhccC---------cHHHHHHHHHHHHHhHhhcc
Confidence 55555443 3343333333333321 12222345677766665443
No 60
>PRK14707 hypothetical protein; Provisional
Probab=98.56 E-value=0.018 Score=79.25 Aligned_cols=397 Identities=18% Similarity=0.136 Sum_probs=201.5
Q ss_pred cHHHHHHHHhcCCcch-hHHHHHHHHHHhhcCHHHHHhhhhcCcHHHHHHHHhcCChhHHHHHHHHHH-Hhhccchhhhh
Q 000184 1201 ALEALTKYLSLGPQDA-TEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALE-SLFSADHIRNA 1278 (1890)
Q Consensus 1201 ~l~~Lv~~L~~~~~~~-q~~a~~~ll~~l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~-~L~~~~~~r~~ 1278 (1890)
.+...++.||.=|.+. -..++..|-.-+..++..+..+-..+.-..|-.+-|.++...-..|+.+|- +|+....-|..
T Consensus 794 ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~a 873 (2710)
T PRK14707 794 EMTNALNALSKWPDTPACAAAASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHT 873 (2710)
T ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhc
Confidence 4566777777754433 333444455556677887766544444445555556665555555555554 44444444444
Q ss_pred hhhcCChHHHHHHhcc-CChHHHHHHHHHH-HHHhccCchhhHHHHhhhCChHHHHHHHHhhcCCh-hhHHHHHHHHHHh
Q 000184 1279 ESARQAVQPLVEILNT-GLEREQHAAIAAL-VRLLSENPSRALAVADVEMNAVDVLCRILSSNCSM-ELKGDAAELCGVL 1355 (1890)
Q Consensus 1279 i~~~~~i~~Lv~lL~~-~~~~~~~~A~~aL-~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~-~~~~~a~~~l~~L 1355 (1890)
+. .+.+.-.+.-|.. ++...-..|+.+| ..|..+...+..+ +...|-..+.-|+.-|+. ..+..+..+-.-|
T Consensus 874 L~-~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal----~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rL 948 (2710)
T PRK14707 874 LT-AHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKAL----SAHRVATALNALSKWPDIPVCATAASALAERL 948 (2710)
T ss_pred cc-hHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhc----cHHHHHHHHhhhccCCCchHHHHHHHHHHHHh
Confidence 43 2233334444432 3344444455555 4444433444433 334455555666544443 4555556666778
Q ss_pred hCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHH
Q 000184 1356 FGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRAL 1434 (1890)
Q Consensus 1356 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL 1434 (1890)
..+++.+..+...+....|=.+=+=++...-..|+.+|..-. .++..+..+-..|.-..|-.|-+=++...-+.|+.+|
T Consensus 949 a~d~~Lr~Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~L 1028 (2710)
T PRK14707 949 SDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEAL 1028 (2710)
T ss_pred ccChhhhhhccHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHH
Confidence 888887766654443333322222244444555555555543 6777776553333333333333323333334444454
Q ss_pred H-HhccCChhhHHHHHHcCcHHHHHHHhcc-CChhHHHHHHHHHHH-HHhcccccCCccccCChHHHHHHhhc-cCCChh
Q 000184 1435 V-KLGKDRPSCKLEMVKAGVIESVLDILHE-APDFLCSAFAELLRI-LTNNAGIAKGPSAAKVVEPLFLLLTR-SEFGPD 1510 (1890)
Q Consensus 1435 ~-~l~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~v~~~aa~~l~~-L~~~~~~~~~~~~~~~v~~Li~lL~~-~~~~~~ 1510 (1890)
. .+..+ +.-...|--.++-.. +.-|+. ++...+..++..+.. |.....-+ ...+...+-..++-|++ |+ .++
T Consensus 1029 A~rLa~e-p~L~~amdaQ~lan~-LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr-~Al~aQ~vAN~LNaLSKWP~-~~~ 1104 (2710)
T PRK14707 1029 AARLSND-PGLCKALSSQGLTTV-LNALCKWPEMPVCLAAASALAERLSDDLVLR-NALDSQGFGNALNALSKWPD-SPV 1104 (2710)
T ss_pred HHHhccC-HhhhhhcchHHHHHH-HHhhccCCCchhHHHHHHHHHHHhhccHHHH-HhhchHHHHHHHHHHhcCCC-cHH
Confidence 4 44444 555555443333333 333433 444556666666532 22222211 12244445555555554 22 233
Q ss_pred hHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccC--CCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHh
Q 000184 1511 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD--SPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL 1588 (1890)
Q Consensus 1511 v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~--s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL 1588 (1890)
.+..+...-..+..++.-...+ ....+..++..|. ...+..+..+...=++|..+.+.+..+...++-..|-.+-
T Consensus 1105 Cr~Aa~~LA~rL~~~~~l~~~f---d~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~LNaLS 1181 (2710)
T PRK14707 1105 CAAAASALAKRLTDDAGLRHVF---DPINVSQALNALSKWPGTQACESAIDVLAATLANAPGLRNALSAQGVAIALNALS 1181 (2710)
T ss_pred HHHHHHHHHHHhccccchhccC---CHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchhhhhhcCHHHHHHHHHHhh
Confidence 3333333333343334434443 4445555566555 4556667777777778888888887766655444444444
Q ss_pred cC-CCHHHHHHHHHHHHHHhcc
Q 000184 1589 GS-GIHILQQRAVKALVSIALT 1609 (1890)
Q Consensus 1589 ~s-~~~~v~~~A~~aL~~l~~~ 1609 (1890)
+. ..+..+..+......++..
T Consensus 1182 KWp~~~ac~~A~~~La~rlG~a 1203 (2710)
T PRK14707 1182 KCLARPVCRSAFVLLAERAGSA 1203 (2710)
T ss_pred cCcCcHHHHHHHHHHHHhhcCC
Confidence 44 5566777666666666643
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00069 Score=84.31 Aligned_cols=334 Identities=15% Similarity=0.135 Sum_probs=221.8
Q ss_pred ChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCC
Q 000184 107 CIPPLLGLLKSSS-AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 185 (1890)
Q Consensus 107 ~i~~Lv~lL~~~~-~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~ 185 (1890)
.|+.|+..+.+.. .+-|+.|+++|..+|. .++ .-|...++++|+..|+... .|+.+-..++..+.++....
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr----kYR---~~Vga~Gmk~li~vL~~D~-~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR----KYR---EEVGAQGMKPLIQVLQRDY-MDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH----HHH---HHHHHcccHHHHHHHhhcc-CCHHHHHHHHHHHHHHHhcC
Confidence 4666666666544 6778899999999988 222 3455566888999998743 46777778888888887655
Q ss_pred h------h--------HHHH---HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchh-hhH-hhccchHHHHHHH
Q 000184 186 E------G--------FWAA---TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSV-CSR-VLAADATKQLLKL 246 (1890)
Q Consensus 186 ~------~--------~~~~---i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~-~~~-i~~~g~i~~Lv~l 246 (1890)
+ . -|-+ |...+-|..|+..+...|--||..+..+|..+..+.+.- +.. +...-+|..++.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 3 1 1222 446788999999999999999999999999988766543 222 3557889999999
Q ss_pred HcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhh
Q 000184 247 LGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVIS 326 (1890)
Q Consensus 247 L~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~ 326 (1890)
|.... +.+|-.+.-.|..|+..++..++.++=.++...|..++...- +.++.-+.+.|+-.|.|+-.
T Consensus 175 L~Dsr-E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEG-----g~dGgIVveDCL~ll~NLLK------- 241 (970)
T KOG0946|consen 175 LRDSR-EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEG-----GLDGGIVVEDCLILLNNLLK------- 241 (970)
T ss_pred Hhhhh-hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcC-----CCCCcchHHHHHHHHHHHHh-------
Confidence 98864 458999999999999988888877777777888877775421 11223444445444444332
Q ss_pred hhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchh
Q 000184 327 SLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIK 406 (1890)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 406 (1890)
.|..++..
T Consensus 242 ------------------------------------------------------------------------~N~SNQ~~ 249 (970)
T KOG0946|consen 242 ------------------------------------------------------------------------NNISNQNF 249 (970)
T ss_pred ------------------------------------------------------------------------hCcchhhH
Confidence 33344555
Q ss_pred hhhcCcHHHHHHHhc---CCC-----HHHH-----HHHHHHHHHhhcc------CchhhHHHHhcCcHHHHHHhhCCC--
Q 000184 407 LENSEAKRLLVGLIT---MAT-----NEVQ-----EELVRALLKLCNN------EGSLWRALQGREGIQLLISLLGLS-- 465 (1890)
Q Consensus 407 l~~~g~i~~Lv~lL~---~~~-----~~v~-----~~a~~aL~~L~~~------~~~~~~~i~~~g~i~~Lv~lL~~~-- 465 (1890)
+.+.+.+|.|..+|. .++ |..| ..++.+++.+... ...+.+.+...+++..|..++-++
T Consensus 250 FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v 329 (970)
T KOG0946|consen 250 FREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV 329 (970)
T ss_pred HhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Confidence 555555555554443 111 1111 1233333333221 112334667788899998888776
Q ss_pred CHHHHHHHHHHHHHcccCChhcHHHHHhcC--C----cHHHHHh----cc-CCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 000184 466 SEQQQECSVALLCLLSNENDDSKWAITAAG--G----IPPLVQI----LE-SGSAKAKEDSASILRNLCNHSEDIRACV 533 (1890)
Q Consensus 466 ~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g--~----i~~Lv~l----L~-~~~~~~~e~a~~aL~~L~~~~~~~r~~i 533 (1890)
..+++-.+.-++++..+++..++..+.+-. - .+.++-+ .. ......|..+..++.....++.+.+..+
T Consensus 330 p~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~ 408 (970)
T KOG0946|consen 330 PADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKF 408 (970)
T ss_pred cHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHH
Confidence 568888899999999998888888887532 1 2222222 22 2366777778888888887777766554
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00027 Score=88.35 Aligned_cols=420 Identities=19% Similarity=0.159 Sum_probs=253.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhh
Q 000184 1245 SQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADV 1324 (1890)
Q Consensus 1245 ~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v 1324 (1890)
..|..=|++.+.-+...|.-+|++++..+-+|+. .|.+.++|+..++..|+.|+.++.++-...+....
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~Emardl------apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e----- 178 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSPEMARDL------APEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVE----- 178 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCHHHhHHh------hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHH-----
Confidence 3445556666777777888888888776654443 46677788888899999888888877653332221
Q ss_pred hCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCC-hhhHHHHHhhCchHHHHHHHcc---------------CChHHHHH
Q 000184 1325 EMNAVDVLCRILSSNCSMELKGDAAELCGVLFGN-TRIRSTVAAARCVEPLVSLLVT---------------EFSPAQHS 1388 (1890)
Q Consensus 1325 ~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~-~~~~~~~~~~~~i~~Lv~lL~~---------------~~~~~~~~ 1388 (1890)
..+++-.++|.+. +..|......++..++.. ++...++.+ .++.||..|++ .+|-.+..
T Consensus 179 --~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~ 253 (866)
T KOG1062|consen 179 --HFVIAFRKLLCEK-HHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR 253 (866)
T ss_pred --HhhHHHHHHHhhc-CCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH
Confidence 2344444555443 234444444444444332 333333333 44555555542 34555666
Q ss_pred HHHHHHhcc-CCchHHHHHHH---------------cCCh--HHHHHhhc-CCcHhHHHHHHHHHHHhccCChhhHHHHH
Q 000184 1389 VVRALDKLV-DDEQLAELVAA---------------HGAV--IPLVGLLY-GRNYMLHEAISRALVKLGKDRPSCKLEMV 1449 (1890)
Q Consensus 1389 a~~aL~~L~-~~~~~~~~~~~---------------~gav--~~L~~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~l~ 1449 (1890)
..+.|.-|+ +|++..+.+.. .++| +.....+. ..+...|..|+.+|++.-.++..+..-+
T Consensus 254 iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYv- 332 (866)
T KOG1062|consen 254 ILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYV- 332 (866)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeee-
Confidence 666666665 44433333210 0111 22223333 5677899999999999888764443222
Q ss_pred HcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcc
Q 000184 1450 KAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCR 1529 (1890)
Q Consensus 1450 ~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~ 1529 (1890)
++..|.+.+..++.-+.+.... ++.+|+++| ...|+.|++.+..+.....-
T Consensus 333 ---aLn~L~r~V~~d~~avqrHr~t-----------------------IleCL~DpD--~SIkrralELs~~lvn~~Nv- 383 (866)
T KOG1062|consen 333 ---ALNMLLRVVQQDPTAVQRHRST-----------------------ILECLKDPD--VSIKRRALELSYALVNESNV- 383 (866)
T ss_pred ---ehhhHHhhhcCCcHHHHHHHHH-----------------------HHHHhcCCc--HHHHHHHHHHHHHHhccccH-
Confidence 7888888888887766555443 345789988 99999999999988544322
Q ss_pred cccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhc----ccccc-----------cchhccCcHHHHHHHhcCCCHH
Q 000184 1530 ADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL----EEQLQ-----------KDPVTQQVIGPLIRVLGSGIHI 1594 (1890)
Q Consensus 1530 ~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~----~~~~~-----------~~l~~~~~i~~Lv~lL~s~~~~ 1594 (1890)
...+.-|+.+|.+.+++.+...+.-+..++. ++.|. +.++...++..+++++.++.++
T Consensus 384 -------~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e 456 (866)
T KOG1062|consen 384 -------RVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQE 456 (866)
T ss_pred -------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcc
Confidence 2346888999998899998888777776665 22222 4455566677888888777777
Q ss_pred HHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhh--hc----hh--hhcc-cchHHH
Q 000184 1595 LQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQ--FS----SE--FYLE-VPVAVL 1665 (1890)
Q Consensus 1595 v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~--~~----~~--~~~~-~~v~~L 1665 (1890)
.+..+...|........ +. +.+ . ..+.+.|.|+++.... .+ +. ..-+ ..+..|
T Consensus 457 ~~~y~~~rLy~a~~~~~-----------~~--~is-~----e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l 518 (866)
T KOG1062|consen 457 LHEYAVLRLYLALSEDT-----------LL--DIS-Q----EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKL 518 (866)
T ss_pred hhhHHHHHHHHHHhhhh-----------hh--hhh-h----hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHH
Confidence 77777777765543210 00 011 1 1223446666655431 11 11 1112 357778
Q ss_pred HHhhcc--CChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHccCCcHHHHHHHH--HHHh-hchhhhhhhhcc
Q 000184 1666 VRLLRS--GSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLL--EVLL-NNGKIRESKATK 1740 (1890)
Q Consensus 1666 v~ll~~--~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~~~a~~al--~~L~-~~~~~r~~i~~~ 1740 (1890)
.+++.+ .+..++..|..||..|+..-... ..-|+.||.-+.++..-+.+-++. ..|. .+.++|+.|+.+
T Consensus 519 ~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~------~~ri~~lI~~~~~s~~~elQQRa~E~~~l~~~~~~lr~siLe~ 592 (866)
T KOG1062|consen 519 EKVLMSHSSDSTTKGYALTALLKLSSRFHSS------SERIKQLISSYKSSLDTELQQRAVEYNALFAKDKHLRKSILER 592 (866)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhcccc------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888764 35788999999999998643332 234677777776654555555544 3444 488888888885
Q ss_pred c
Q 000184 1741 S 1741 (1890)
Q Consensus 1741 ~ 1741 (1890)
.
T Consensus 593 m 593 (866)
T KOG1062|consen 593 M 593 (866)
T ss_pred C
Confidence 5
No 63
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.44 E-value=9.6e-06 Score=88.74 Aligned_cols=255 Identities=18% Similarity=0.194 Sum_probs=176.7
Q ss_pred HHHHHHHHhcCC--hhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHH
Q 000184 1244 VSQLVAVLRLGG--RGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAV 1321 (1890)
Q Consensus 1244 i~~Lv~lL~~~~--~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~ 1321 (1890)
++.+..+|.+.+ ...|+.|...|.++. ..+.+..+.+.+.+.+.-.++..++.|+....
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~----------~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------- 65 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLL----------GPAAIKAITKAFIDDSALLKHELAYVLGQMQD--------- 65 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccC----------ChHHHHHHHHhcccchhhhccchhhhhhhhcc---------
Confidence 344445554433 234566644454432 23337777777777766777778888887763
Q ss_pred HhhhCChHHHHHHHHhhcCC-hhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccC--
Q 000184 1322 ADVEMNAVDVLCRILSSNCS-MELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD-- 1398 (1890)
Q Consensus 1322 ~~v~~g~v~~L~~lL~~~~~-~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~-- 1398 (1890)
..+++.|...|.+.++ +-++-+|+.+|+.++ .+...+.|-+..+++..++++.+-.|+..+-+
T Consensus 66 ----~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 66 ----EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred ----chhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 4678888888876543 335667777877664 22344455555567777777777777766641
Q ss_pred --------------CchHHHHHHHcCChHHHHHhhcCCcH--hHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhc
Q 000184 1399 --------------DEQLAELVAAHGAVIPLVGLLYGRNY--MLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILH 1462 (1890)
Q Consensus 1399 --------------~~~~~~~~~~~gav~~L~~lL~~~~~--~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~ 1462 (1890)
||.-. ...+-+..|-..|.+.+. --|..|..+|.+++... .|..|++-+.
T Consensus 132 ~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~Ee-----------aI~al~~~l~ 197 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEE-----------AINALIDGLA 197 (289)
T ss_pred ccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHH-----------HHHHHHHhcc
Confidence 01000 011224445444443332 34667778888998876 7888999998
Q ss_pred cCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhh
Q 000184 1463 EAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEP 1542 (1890)
Q Consensus 1463 ~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~ 1542 (1890)
.+..-.++++|..++.|-+... ++.|.+.|.+..-.+-||+.|+.||+.+ ....+++.
T Consensus 198 ~~SalfrhEvAfVfGQl~s~~a----------i~~L~k~L~d~~E~pMVRhEaAeALGaI------------a~e~~~~v 255 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQSPAA----------IPSLIKVLLDETEHPMVRHEAAEALGAI------------ADEDCVEV 255 (289)
T ss_pred cchHHHHHHHHHHHhhccchhh----------hHHHHHHHHhhhcchHHHHHHHHHHHhh------------cCHHHHHH
Confidence 8877789999999987765544 9999999988777799999999999998 78899999
Q ss_pred hhhccCCCCHHHHHHHHHHHHHhhc
Q 000184 1543 LIPLLDSPAPAVQQLAAELLSHLLL 1567 (1890)
Q Consensus 1543 Lv~lL~s~~~~vq~~A~~aL~~l~~ 1567 (1890)
|.++++++.+.|++.+.-+|..+..
T Consensus 256 L~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886654
No 64
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.40 E-value=0.00013 Score=85.28 Aligned_cols=353 Identities=14% Similarity=0.106 Sum_probs=220.0
Q ss_pred CCchHHHHHHhhcCC-HHHHHHHHHHHHHhhccchhhHHHHh-------cCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000184 64 SQAVPVLVSLLRSGS-LAVKIQAATVLGSLCKENELRVKVLL-------GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 64 ~g~v~~Lv~lL~~~~-~~~~~~aa~~L~~L~~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~ 135 (1890)
+.++.+++.++..-+ ++....+...+..+-.++..|..++. .-..++++.+|...+.-......+.+..++.
T Consensus 64 ~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 64 AQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 367788999997654 56778888888887767766665442 2337899999998888777767777777766
Q ss_pred CCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcC--CCHHHH
Q 000184 136 GGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQ 213 (1890)
Q Consensus 136 ~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~ 213 (1890)
-++....+...-+. ...|..++++... +.....+.+||..+... +++|-.++.+.|+..++..+.+ .+-.+|
T Consensus 144 ~g~~~~~~~e~~~~---~~~l~~~l~~~~~--~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 144 FGNCKMELSELDVY---KGFLKEQLQSSTN--NDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred hccccccchHHHHH---HHHHHHHHhccCC--CchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHH
Confidence 33311111111011 2234455555332 33444677899998854 4788889999999999999953 456788
Q ss_pred HHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCH------HHHHHHHhcCChHHHH
Q 000184 214 AHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK------DARREIAGSNGIPAMI 287 (1890)
Q Consensus 214 ~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~------~~~~~i~~~g~i~~Lv 287 (1890)
.+.+.+++.|..... ..+.+...+.++.|.++++....++|-+.+..+++|+....+ +....++..+. +.-+
T Consensus 218 YqsifciWlLtFn~~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v-~k~l 295 (442)
T KOG2759|consen 218 YQSIFCIWLLTFNPH-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV-LKTL 295 (442)
T ss_pred HHHHHHHHHhhcCHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc-hHHH
Confidence 999999987765543 556666778999999999988778899999999999988664 22334455444 4444
Q ss_pred HhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCCh
Q 000184 288 NATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 367 (1890)
Q Consensus 288 ~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~ 367 (1890)
+.|.... -.|+++.+.. -++......-+..+ ..||
T Consensus 296 ~~L~~rk------ysDEDL~~di----~~L~e~L~~svq~L----------------------------------sSFD- 330 (442)
T KOG2759|consen 296 QSLEERK------YSDEDLVDDI----EFLTEKLKNSVQDL----------------------------------SSFD- 330 (442)
T ss_pred HHHHhcC------CCcHHHHHHH----HHHHHHHHHHHHhh----------------------------------ccHH-
Confidence 5553321 1122322211 11111000000000 0000
Q ss_pred hhhHHHHHhhcCCCCCh--HHHHHHHHHHHHhhCCCccchhhhh--cCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhccC
Q 000184 368 LIVEQTLVNQFKPRLPF--LVQERTIEALASLYGNPLLSIKLEN--SEAKRLLVGLITMA-TNEVQEELVRALLKLCNNE 442 (1890)
Q Consensus 368 ~~i~~~L~~ll~~~~~~--~~~~~a~~aL~~L~~~~~~~~~l~~--~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~ 442 (1890)
+..-++..+.-.+ .-+..- +. .+|...+.+ ...++.|+.+|+.+ ||.+..-|+.-+.......
T Consensus 331 ----eY~sEl~sG~L~WSP~Hk~e~---FW-----~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y 398 (442)
T KOG2759|consen 331 ----EYKSELRSGRLEWSPVHKSEK---FW-----RENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY 398 (442)
T ss_pred ----HHHHHHHhCCcCCCccccccc---hH-----HHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC
Confidence 0000111100000 000000 00 011112222 23567888999854 5888888888898888888
Q ss_pred chhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 000184 443 GSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 481 (1890)
Q Consensus 443 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~ 481 (1890)
|.-+..+.+.||-+.+++++.++++++++.|..++..|-
T Consensus 399 P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 399 PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 888888889999999999999999999999998887764
No 65
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.39 E-value=1.2e-05 Score=92.88 Aligned_cols=274 Identities=16% Similarity=0.126 Sum_probs=188.2
Q ss_pred hhHHHHhcCcHHHHHHhhCCCCHHH--HHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccC-CCHHHHHHHHHHHHH
Q 000184 445 LWRALQGREGIQLLISLLGLSSEQQ--QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRN 521 (1890)
Q Consensus 445 ~~~~i~~~g~i~~Lv~lL~~~~~~v--~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~e~a~~aL~~ 521 (1890)
.|..+...|++..|+.++..++.+. +.+|...|-.+. ..+|++.++.-| ...++.+-+. ..++.+...+.+|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 4567888899999999999987654 888999999987 478888888877 5555555543 367888889999999
Q ss_pred HhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhh
Q 000184 522 LCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSV 601 (1890)
Q Consensus 522 L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 601 (1890)
+..|+++....+++.|++..++--.+..+|...+.++-+|.|++-|... .
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~---------------a--------------- 298 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQ---------------A--------------- 298 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchh---------------H---------------
Confidence 9999999999999999999999888888899999999999998664321 0
Q ss_pred cCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHH
Q 000184 602 VSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRC 681 (1890)
Q Consensus 602 ~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~a 681 (1890)
.++.+.+..+-++|..+-.+.++-+|.+||.+.+.|+.+ ++.-..+...|.+...--++.+.++..- ++-
T Consensus 299 ------~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~F---ARD 368 (832)
T KOG3678|consen 299 ------VQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGRF---ARD 368 (832)
T ss_pred ------HHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcchh---hhh
Confidence 233444555677888888888999999999999999986 5555556666653333333344444211 110
Q ss_pred HHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc--hHHHH-HHhcCcHHHHHHHHhcCCcch
Q 000184 682 LAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS--EVSEK-AIAEEIILPATRVLCEGTISG 758 (1890)
Q Consensus 682 L~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~--~~~~~-~~~~~~v~~L~~ll~~~~~~~ 758 (1890)
-...+.+ ...++++.|+.+|.+...|.|..++.-++.=+.-+ ..... +-+-+++..|-++..+.+.-.
T Consensus 369 ~hd~aQG---------~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~va 439 (832)
T KOG3678|consen 369 AHDYAQG---------RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVA 439 (832)
T ss_pred hhhhhcc---------CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHH
Confidence 0111111 13567889999999877777766655444322111 11111 224577778877777554444
Q ss_pred HHHHHHHHHHHh
Q 000184 759 KTLAAAAIARLL 770 (1890)
Q Consensus 759 ~~~aa~aL~~L~ 770 (1890)
..-|..||--+.
T Consensus 440 akfAseALtviG 451 (832)
T KOG3678|consen 440 AKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHHHhc
Confidence 555666665544
No 66
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.2e-05 Score=89.48 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=154.6
Q ss_pred CCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHH
Q 000184 464 LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALL 543 (1890)
Q Consensus 464 ~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv 543 (1890)
+.+.+-++.|..-|..++ ++-++...+...||..+++..+++++..+|+.|+|+|+.....||..+..+.+.|+.+.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 346777888888888888 5778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCh-hHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHH
Q 000184 544 WLLKNGSA-NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMI 622 (1890)
Q Consensus 544 ~ll~~~~~-~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv 622 (1890)
..+.+.++ .++.+|..+++.|.++..++ +..+...+|...|.
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g-------------------------------------~~~fl~~~G~~~L~ 215 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPG-------------------------------------QDEFLKLNGYQVLR 215 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHH-------------------------------------HHHHHhcCCHHHHH
Confidence 99987555 56688888888887765441 22334466799999
Q ss_pred HHhcC--CCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHcc
Q 000184 623 KILSS--TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 688 (1890)
Q Consensus 623 ~lL~s--~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 688 (1890)
..|.+ .+...++.+...+..+....+...+.+-..+....++.+....+.++...+..++..+...
T Consensus 216 ~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 216 DVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 99988 6788999999999999988776666566666777777777777778888888888777544
No 67
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.33 E-value=0.0045 Score=76.35 Aligned_cols=526 Identities=16% Similarity=0.156 Sum_probs=274.3
Q ss_pred CcHHHHHHHHh----cC-ChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHH----hccCChHHHHHHHHHHHHHhc
Q 000184 1242 AAVSQLVAVLR----LG-GRGARYSAAKALESLFSADHIRNAESARQAVQPLVEI----LNTGLEREQHAAIAALVRLLS 1312 (1890)
Q Consensus 1242 g~i~~Lv~lL~----~~-~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~l----L~~~~~~~~~~A~~aL~~L~~ 1312 (1890)
=.+|.|..+|+ +. +...|....+....++..-.+ .--.-+.+|+++ |.+....+|..++.+|..+++
T Consensus 507 lgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gc----svlphl~~lv~ii~~gl~De~qkVR~itAlalsalae 582 (1172)
T KOG0213|consen 507 LGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGC----SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAE 582 (1172)
T ss_pred hCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcc----hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHH
Confidence 34555555553 33 445555555544444332111 011124445544 455666778778888888886
Q ss_pred cC-chhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCC--hhhHHHHHhhCchHHHHHHHccCChHHHHHH
Q 000184 1313 EN-PSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGN--TRIRSTVAAARCVEPLVSLLVTEFSPAQHSV 1389 (1890)
Q Consensus 1313 ~~-~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~--~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a 1389 (1890)
.. +-....+ ..++.+|-+-.+.+-. .....-..+.+-|+-. ++..... ....+-.+++=+.+++++.+.-.
T Consensus 583 aa~Pygie~f----DsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~yy-Trevmlil~rEf~sPDeemkkiv 656 (1172)
T KOG0213|consen 583 AATPYGIEQF----DSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASYY-TREVMLILIREFGSPDEEMKKIV 656 (1172)
T ss_pred hcCCcchHHH----HHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHHh-HHHHHHHHHHhhCCChHHHHHHH
Confidence 32 2221111 1244444444433211 2222223444444322 2222222 22345566667778999999999
Q ss_pred HHHHHhccCCchHHHHHHHcCChHHHHHhhc-------CCc-HhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHh
Q 000184 1390 VRALDKLVDDEQLAELVAAHGAVIPLVGLLY-------GRN-YMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDIL 1461 (1890)
Q Consensus 1390 ~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~-------~~~-~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL 1461 (1890)
...+..+|..+..-........++.+..-.. ..+ ..+-.-++..-.+++... .+..++.-+
T Consensus 657 LKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~-----------~v~R~v~~l 725 (1172)
T KOG0213|consen 657 LKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP-----------IVSRVVLDL 725 (1172)
T ss_pred HHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH-----------HHHHHhhhh
Confidence 9999999843332222223444555543322 111 222233334444555553 667777778
Q ss_pred ccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchh
Q 000184 1462 HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIE 1541 (1890)
Q Consensus 1462 ~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~ 1541 (1890)
.++++..+...+++. +..+..+...+++......-++.|.+-.++......
T Consensus 726 kde~e~yrkm~~etv-------------------~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~---------- 776 (1172)
T KOG0213|consen 726 KDEPEQYRKMVAETV-------------------SRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS---------- 776 (1172)
T ss_pred ccccHHHHHHHHHHH-------------------HHHHhccccccccHHHHHHHHHHHHHHHHhcccchh----------
Confidence 888887777666554 445556666664444444455555544332221111
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh----H-HHh
Q 000184 1542 PLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN----E-IAK 1616 (1890)
Q Consensus 1542 ~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~----~-l~~ 1616 (1890)
|-..+..++.+-.. .+-.-.....+...+..|++.++.+|+.|+..+..++.--.. . +.+
T Consensus 777 ------------vml~gfg~V~~~lg---~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~ 841 (1172)
T KOG0213|consen 777 ------------VMLLGFGTVVNALG---GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGH 841 (1172)
T ss_pred ------------hhhhhHHHHHHHHh---hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 11122222221110 000011123457778889999999999999999998742111 1 333
Q ss_pred hcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchh-hhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhH
Q 000184 1617 EGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSE-FYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSA 1695 (1890)
Q Consensus 1617 ~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~ 1695 (1890)
-|.| |-+.+-..+|.+-..+.. |+..+.|..+..+- .=..+-+|.|.-.|.+..+.|++..+..++.++...+...
T Consensus 842 lGvv--LyEylgeeypEvLgsILg-AikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v 918 (1172)
T KOG0213|consen 842 LGVV--LYEYLGEEYPEVLGSILG-AIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV 918 (1172)
T ss_pred hhHH--HHHhcCcccHHHHHHHHH-HHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC
Confidence 3433 444555556655544444 44444444322221 1122457888888999999999999999999998765522
Q ss_pred HHHHHcccHHHHHHHHccCCcHHHHHHHHHHHhhchhhhhhhhccccccc---cccccCChHHHHHHHHHHHHHhcchhh
Q 000184 1696 EAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKSAILP---LSQYLLDPQTQAQQARLLATLALGDLF 1772 (1890)
Q Consensus 1696 ~~i~~~g~i~~Li~lL~~~~~~~~a~~al~~L~~~~~~r~~i~~~~~i~~---L~~~~~~~~~~~~~~~~la~l~~~~~~ 1772 (1890)
..--=...-=-|+++|.++ .++....+..+++.-.+ +|.| |.-++++-.++.++-++-..++++-.+
T Consensus 919 ~aREWMRIcfeLlelLkah-kK~iRRaa~nTfG~Iak---------aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVa 988 (1172)
T KOG0213|consen 919 SAREWMRICFELLELLKAH-KKEIRRAAVNTFGYIAK---------AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA 988 (1172)
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHH---------hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhh
Confidence 1000011223467777775 44444444444433111 2322 223334444555554444444444222
Q ss_pred hhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcC------cHHHHHHHhCCCCCCchH
Q 000184 1773 QNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAG------GVQVVLDLIGSSDPETSV 1846 (1890)
Q Consensus 1773 ~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g------~v~~L~~ll~~~~~~~~~ 1846 (1890)
| .| +--..++.|++=-+. |+-.|+-..++|++-+. +.+-+.+ ..+.|-+.+-..+.--+.
T Consensus 989 --E-~c---~pFtVLPalmneYrt-Pe~nVQnGVLkalsf~F-------eyigemskdYiyav~PlleDAlmDrD~vhRq 1054 (1172)
T KOG0213|consen 989 --E-TC---GPFTVLPALMNEYRT-PEANVQNGVLKALSFMF-------EYIGEMSKDYIYAVTPLLEDALMDRDLVHRQ 1054 (1172)
T ss_pred --h-hc---CchhhhHHHHhhccC-chhHHHHhHHHHHHHHH-------HHHHHHhhhHHHHhhHHHHHhhccccHHHHH
Confidence 2 11 112356666665556 48889999999988887 3333222 344455555555555667
Q ss_pred HHHHHHHHHhccc
Q 000184 1847 QAAMFVKLLFSNH 1859 (1890)
Q Consensus 1847 ~a~~~l~~l~~~~ 1859 (1890)
+|+.+++.+.-|+
T Consensus 1055 ta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1055 TAMNVIKHLALGV 1067 (1172)
T ss_pred HHHHHHHHHhcCC
Confidence 7888888777664
No 68
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.001 Score=82.84 Aligned_cols=523 Identities=18% Similarity=0.221 Sum_probs=279.5
Q ss_pred HHHHHHhcCChhHHHHHHHHH-HHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhh
Q 000184 1246 QLVAVLRLGGRGARYSAAKAL-ESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADV 1324 (1890)
Q Consensus 1246 ~Lv~lL~~~~~~~r~~Aa~aL-~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v 1324 (1890)
-|..+|.+..+..|..|-.-+ .-++.-++ ...-+|..|+..-+.+.++|+-.-.-|.+.++.+++-..+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL---- 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL---- 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee----
Confidence 455666666666666553322 22222111 1224788999998999999998877888889866554433
Q ss_pred hCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHH
Q 000184 1325 EMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLA 1403 (1890)
Q Consensus 1325 ~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~ 1403 (1890)
.+..+-+-|.+ ++..++..|.+++..+ |..+...-.+-.+-+...+.++-+|..|+-|+-+|- -+++..
T Consensus 109 ---SIntfQk~L~D-pN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 109 ---SINTFQKALKD-PNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred ---eHHHHHhhhcC-CcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 56677788877 4668888888888654 334433333444445567899999999999999998 566655
Q ss_pred HHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcc
Q 000184 1404 ELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNA 1483 (1890)
Q Consensus 1404 ~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~ 1483 (1890)
+.+ ++.+-.||.+.++.|--.|++|.-.++.++ - .++ .+-...|..+|.+-++.=+...... |....
T Consensus 179 ~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---l-dLI-HknyrklC~ll~dvdeWgQvvlI~m---L~RYA 245 (968)
T KOG1060|consen 179 DQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---L-DLI-HKNYRKLCRLLPDVDEWGQVVLINM---LTRYA 245 (968)
T ss_pred HHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---H-HHh-hHHHHHHHhhccchhhhhHHHHHHH---HHHHH
Confidence 544 677888999999999999999999998665 1 111 1233455555554332211111111 22221
Q ss_pred cccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhh----hccCCCCHHHHHHHH
Q 000184 1484 GIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLI----PLLDSPAPAVQQLAA 1559 (1890)
Q Consensus 1484 ~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv----~lL~s~~~~vq~~A~ 1559 (1890)
+ ........+.. .+. +.+.+.. +...++ +.+.-+ ....-+..|+ .+|.|.++.+.-+++
T Consensus 246 R--~~l~~P~~~~~---~~e--~n~~~~~---~~~~~~-----~~~~P~--~~d~D~~lLL~stkpLl~S~n~sVVmA~a 308 (968)
T KOG1060|consen 246 R--HQLPDPTVVDS---SLE--DNGRSCN---LKDKYN-----EIRTPY--VNDPDLKLLLQSTKPLLQSRNPSVVMAVA 308 (968)
T ss_pred H--hcCCCcccccc---ccc--cCccccc---cccccc-----ccCCCc--ccCccHHHHHHhccHHHhcCCcHHHHHHH
Confidence 1 00000000000 000 0000000 000000 011111 1122233333 456689999999999
Q ss_pred HHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHH-H-HhhcCCCCcHH
Q 000184 1560 ELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSK-I-ILQADPSLPHA 1637 (1890)
Q Consensus 1560 ~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~-~-l~~~~~~~~~~ 1637 (1890)
.++.+++-..+ ....+.+|+++|++ ++++|.-.+.++..++...+.-+ .+-+| . +.+.|+ ....
T Consensus 309 ql~y~lAP~~~------~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF------~P~lKsFfv~ssDp-~~vk 374 (968)
T KOG1060|consen 309 QLFYHLAPKNQ------VTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLF------EPHLKSFFVRSSDP-TQVK 374 (968)
T ss_pred hHHHhhCCHHH------HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhh------hhhhhceEeecCCH-HHHH
Confidence 99999987332 23457999999975 45677777777777776543211 22222 1 223443 2233
Q ss_pred HHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHccC--C
Q 000184 1638 LWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSH--Q 1715 (1890)
Q Consensus 1638 ~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~--~ 1715 (1890)
++. +-+|++++..+. +..-++-|-.+..+.+.++...|..+++.-+. +..-+......-|+.+++++ .
T Consensus 375 ~lK--leiLs~La~esn---i~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~-----~~~sv~~tCL~gLv~Llsshde~ 444 (968)
T KOG1060|consen 375 ILK--LEILSNLANESN---ISEILRELQTYIKSSDRSFAAAAVKAIGRCAS-----RIGSVTDTCLNGLVQLLSSHDEL 444 (968)
T ss_pred HHH--HHHHHHHhhhcc---HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-----hhCchhhHHHHHHHHHHhcccch
Confidence 333 445555542111 01124445556666666555555555554332 22223456778899999885 2
Q ss_pred cHHHHHHHHHHHhh-chhhhhhhhccccccccccccCChHHHHHHHHHHHHHhcchhhhhh-hhhhcccccchHHHHHHh
Q 000184 1716 CEETAARLLEVLLN-NGKIRESKATKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNE-GLARSADAVSACRALVNV 1793 (1890)
Q Consensus 1716 ~~~~a~~al~~L~~-~~~~r~~i~~~~~i~~L~~~~~~~~~~~~~~~~la~l~~~~~~~~~-~l~~~~~~~~~~~~Lv~l 1793 (1890)
+-..++..+..|.. ++.-...++.+ |.+++ |. ..+-.+++--.--+|...-.. .+ -...++.+++-
T Consensus 445 Vv~eaV~vIk~Llq~~p~~h~~ii~~-----La~ll-dt-i~vp~ARA~IiWLige~~e~vpri-----~PDVLR~laks 512 (968)
T KOG1060|consen 445 VVAEAVVVIKRLLQKDPAEHLEILFQ-----LARLL-DT-ILVPAARAGIIWLIGEYCEIVPRI-----APDVLRKLAKS 512 (968)
T ss_pred hHHHHHHHHHHHHhhChHHHHHHHHH-----HHHHh-hh-hhhhhhhceeeeeehhhhhhcchh-----chHHHHHHHHh
Confidence 45555556666655 44322233332 22222 11 111111111111122111111 01 11346667777
Q ss_pred hccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHHHHhCCCCCCchHHHHHHHHHHhccch
Q 000184 1794 LEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHT 1860 (1890)
Q Consensus 1794 L~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~ 1860 (1890)
..+. +.++|-..+.--..|...+...-.. .+.-.+++....-.=..+..+++++-|.+...
T Consensus 513 Fs~E-~~evKlQILnL~aKLyl~~~~~~kl-----l~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~~ 573 (968)
T KOG1060|consen 513 FSDE-GDEVKLQILNLSAKLYLTNIDQTKL-----LVQYVFELARYDLSYDIRDRARFLRQLISPLE 573 (968)
T ss_pred hccc-cchhhHHHHHhhhhheEechhhHHH-----HHHHHHHHhccCCCcchhHHHHHHHHHhccHH
Confidence 7776 7888887777666665333322111 12233445554444466677888888777665
No 69
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.32 E-value=1.1e-05 Score=97.61 Aligned_cols=222 Identities=17% Similarity=0.168 Sum_probs=154.2
Q ss_pred CchHHHHHHhhc--CCHHHHHHHHHHHHHhhccchhhHHHHhc-------CChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000184 65 QAVPVLVSLLRS--GSLAVKIQAATVLGSLCKENELRVKVLLG-------GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 65 g~v~~Lv~lL~~--~~~~~~~~aa~~L~~L~~~~~~~~~i~~~-------g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~ 135 (1890)
++...++.+|+. .++++..++...+.++..++..+.+.+.. ....+|++++.++|.-.+..|+..|..+..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 556677777764 47789999999999999777665554432 357899999999999999999999999877
Q ss_pred CCCCCccccchhhhcCChHHHHHHHhccCCC-CchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhh-----c--C
Q 000184 136 GGAKDYVGSKIFSTEGVVPVLWEQLKNGLKS-GNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLL-----T--L 207 (1890)
Q Consensus 136 ~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~-~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL-----~--~ 207 (1890)
.+..... ....+.++.+.+.++..... +...+..+..+|.+|. ..+.+|..+.+.|+++.+.+++ . .
T Consensus 135 ~~~~~~~----~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 135 QGPKRSE----KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp STTT--H----HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH--------
T ss_pred cCCcccc----chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCC
Confidence 3221111 11256788899888874332 2335677889999998 5568888899999999999999 2 2
Q ss_pred CCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHH-HHHHHHhcCChHHH
Q 000184 208 GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD-ARREIAGSNGIPAM 286 (1890)
Q Consensus 208 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~-~~~~i~~~g~i~~L 286 (1890)
.+..++.+++.+++.|+...+ ....+...+.++.|+++++....+++.+.+..+|+||...+++ +...++..|+++.+
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l 288 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPE-IAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTL 288 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHH
T ss_pred CchhHHHHHHHHHHHHhcCHH-HHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHH
Confidence 346778999999987765544 7778888889999999999888889999999999999986554 67777887776666
Q ss_pred HHhhcC
Q 000184 287 INATIA 292 (1890)
Q Consensus 287 v~ll~~ 292 (1890)
-.+...
T Consensus 289 ~~L~~r 294 (312)
T PF03224_consen 289 QNLSER 294 (312)
T ss_dssp HHHHSS
T ss_pred HHHhcC
Confidence 555544
No 70
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.2e-05 Score=90.75 Aligned_cols=181 Identities=17% Similarity=0.129 Sum_probs=157.4
Q ss_pred HHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCC-
Q 000184 387 QERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS- 465 (1890)
Q Consensus 387 ~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~- 465 (1890)
++.|+.-|..+.++-++...+...|+..+++..+++++..+|+.|++.+.....+++.....+.+.|+.+.|+..+.+.
T Consensus 100 ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~ 179 (342)
T KOG2160|consen 100 KEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDD 179 (342)
T ss_pred HHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCC
Confidence 7888888888889989999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccC--CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHH
Q 000184 466 SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES--GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALL 543 (1890)
Q Consensus 466 ~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv 543 (1890)
+..++..|..+++.+.+.++.....+...+|...|...+++ .+...+..++..+..+.......+..+...|....++
T Consensus 180 ~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~ 259 (342)
T KOG2160|consen 180 PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLE 259 (342)
T ss_pred CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Confidence 55677889999999999899999999999999999999999 4778889999999999986555666555566667777
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcC
Q 000184 544 WLLKNGSANGKEIAAKTLNHLIHK 567 (1890)
Q Consensus 544 ~ll~~~~~~~~~~Aa~aL~~L~~~ 567 (1890)
.+....+....+.+..++..+...
T Consensus 260 ~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 260 NLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHhhccchhhhHHHHHHHHHHHHH
Confidence 777777888888888877776553
No 71
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.29 E-value=0.00032 Score=91.15 Aligned_cols=545 Identities=15% Similarity=0.122 Sum_probs=306.6
Q ss_pred HHHhcCChhHHHHHHHHHHHhhcc-chhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCC
Q 000184 1249 AVLRLGGRGARYSAAKALESLFSA-DHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMN 1327 (1890)
Q Consensus 1249 ~lL~~~~~~~r~~Aa~aL~~L~~~-~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g 1327 (1890)
.-++..+...|..+..-+.+++.. ...+. ....+|-+-+.. +..+++..+++.-++.+...--...+. +
T Consensus 89 ~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~------~ 158 (759)
T KOG0211|consen 89 DELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYA------H 158 (759)
T ss_pred hccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHH------H
Confidence 333334444455554445454432 12122 334567777777 666777888777777777532222211 2
Q ss_pred hHHHHHHHHhhcCChhhHHHHHHHHHHh-hCChhhHHHHHhhCchHHHHHHHccCC-hHHHHHHHHHHHhcc--CC-chH
Q 000184 1328 AVDVLCRILSSNCSMELKGDAAELCGVL-FGNTRIRSTVAAARCVEPLVSLLVTEF-SPAQHSVVRALDKLV--DD-EQL 1402 (1890)
Q Consensus 1328 ~v~~L~~lL~~~~~~~~~~~a~~~l~~L-~~~~~~~~~~~~~~~i~~Lv~lL~~~~-~~~~~~a~~aL~~L~--~~-~~~ 1402 (1890)
.+.+..+.+.......+++.+...+... ...+.-.. ..-+.+++..+..++ ..-|..++....... .+ +..
T Consensus 159 ~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~----~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v 234 (759)
T KOG0211|consen 159 MLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKL----REHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV 234 (759)
T ss_pred HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHH----HHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH
Confidence 3333333333222335566666555443 22222111 112233344443332 223556666666665 22 222
Q ss_pred HHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhc
Q 000184 1403 AELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNN 1482 (1890)
Q Consensus 1403 ~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~ 1482 (1890)
+...-+..-++-++.++.+|+.+..=+++++..- ....+..+.++.+..+..++.+.|+..+...+.++..+
T Consensus 235 -----k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l 306 (759)
T KOG0211|consen 235 -----KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDL 306 (759)
T ss_pred -----HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHh
Confidence 2222444556667899999999999888888553 33788899999999999999999999999988877655
Q ss_pred ccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHH
Q 000184 1483 AGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELL 1562 (1890)
Q Consensus 1483 ~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL 1562 (1890)
-.... .......+.+++...+++ ..++.........+....+. .. ....-+++...++++.+.+.+.+.+.-.
T Consensus 307 ~~~~~-d~~~~~~~~l~~~~~d~~--~~v~~~~~~~~~~L~~~~~~-~~---~~~~~~~~~~~l~~~~~~e~r~a~a~~~ 379 (759)
T KOG0211|consen 307 LDDDD-DVVKSLTESLVQAVEDGS--WRVSYMVADKFSELSSAVGP-SA---TRTQLVPPVSNLLKDEEWEVRYAIAKKV 379 (759)
T ss_pred cCCch-hhhhhhhHHHHHHhcChh--HHHHHHHhhhhhhHHHHhcc-cc---CcccchhhHHHHhcchhhhhhHHhhcch
Confidence 54322 234456788888888766 66666666666666544333 11 4556688999999999999999998777
Q ss_pred HHhhcccc--cccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHH----HHHhhcCCCCcH
Q 000184 1563 SHLLLEEQ--LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELS----KIILQADPSLPH 1636 (1890)
Q Consensus 1563 ~~l~~~~~--~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll----~~l~~~~~~~~~ 1636 (1890)
..+..... ....+.....++.+..+..+.++.++.+.+..+..+.-.-+ ++..|+.++ ..+.+.++.++.
T Consensus 380 ~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~----k~~ti~~llp~~~~~l~de~~~V~l 455 (759)
T KOG0211|consen 380 QKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP----KERTISELLPLLIGNLKDEDPIVRL 455 (759)
T ss_pred HHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC----cCcCccccChhhhhhcchhhHHHHH
Confidence 77666432 23344444557888888899999999999998888854332 222333333 344444443332
Q ss_pred HHHHHHHHHHHhhhhhchh----hhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHH-
Q 000184 1637 ALWESAASVLSSILQFSSE----FYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELL- 1711 (1890)
Q Consensus 1637 ~~~~~a~~~l~~~~~~~~~----~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL- 1711 (1890)
- ....++..-...+. ...+.-+|.++.+-.+..|.+|.+....+..++.... ..++..- ..+++..+
T Consensus 456 n----li~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~-~~~l~~~~l 527 (759)
T KOG0211|consen 456 N----LIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEK-LAELLRTWL 527 (759)
T ss_pred h----hHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHH-HHHHHHhhh
Confidence 2 22222222211111 1122357888888888899999999998888876433 2222222 33333332
Q ss_pred ccC--CcHHHHHHHHHHHhh---chhhhhhhhcccccccccc-ccCChHHHHHHHHHHHHHhcchhhhhhhhhhcccccc
Q 000184 1712 RSH--QCEETAARLLEVLLN---NGKIRESKATKSAILPLSQ-YLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVS 1785 (1890)
Q Consensus 1712 ~~~--~~~~~a~~al~~L~~---~~~~r~~i~~~~~i~~L~~-~~~~~~~~~~~~~~la~l~~~~~~~~~~l~~~~~~~~ 1785 (1890)
.++ ..++.+++-+..|+. .+-.+..++.+.+..-+.. |.. -.........+ +..+|...- ..-
T Consensus 528 ~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~-R~t~l~si~~l-a~v~g~ei~---------~~~ 596 (759)
T KOG0211|consen 528 PDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLV-RMTTLFSIHEL-AEVLGQEIT---------CED 596 (759)
T ss_pred hhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccch-hhHHHHHHHHH-HHHhccHHH---------HHH
Confidence 221 245555555554433 2233333333322211111 111 11111111111 112222221 123
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHHHHhCCCCCCchHHHH
Q 000184 1786 ACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAA 1849 (1890)
Q Consensus 1786 ~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~a~ 1849 (1890)
.++++..+..+. .++||-++++.|..+...-.. ...+.-..+.++.+..+.+.+-++-|.
T Consensus 597 Llp~~~~l~~D~-vanVR~nvak~L~~i~~~L~~---~~~~~~v~pll~~L~~d~~~dvr~~a~ 656 (759)
T KOG0211|consen 597 LLPVFLDLVKDP-VANVRINVAKHLPKILKLLDE---SVRDEEVLPLLETLSSDQELDVRYRAI 656 (759)
T ss_pred HhHHHHHhccCC-chhhhhhHHHHHHHHHhhcch---HHHHHHHHHHHHHhccCcccchhHHHH
Confidence 577778888884 999999999999999833332 334455555566666655555444444
No 72
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=0.00063 Score=83.93 Aligned_cols=375 Identities=15% Similarity=0.093 Sum_probs=235.9
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh
Q 000184 372 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 451 (1890)
Q Consensus 372 ~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~ 451 (1890)
|.+-..+.+.....+++....-...++.+-....... ...+..+++-+..+++.+|+....||..+....... ..
T Consensus 58 ~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~-~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~----~~ 132 (569)
T KOG1242|consen 58 PCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRP-ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL----SG 132 (569)
T ss_pred HHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcch-hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc----CH
Confidence 3344444433344456555555555544332111111 135567788888999999999999998776542221 11
Q ss_pred cCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHH-HHHHHHHHHHHhcCChHHH
Q 000184 452 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA-KEDSASILRNLCNHSEDIR 530 (1890)
Q Consensus 452 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~-~e~a~~aL~~L~~~~~~~r 530 (1890)
....+.+.++++..+..-+..+++.+..+.. ...-..+.+.+.+..|.....+..... +|.+..+....+.+....
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~--g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~- 209 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVN--GLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP- 209 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHc--CcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC-
Confidence 2346788889998889999999999999985 344566777888999998888774444 443444443333321111
Q ss_pred HHHHhCCCHHHHHHHhh---cCChhHHHHHHHHHHHHhcCCCCCcHHH----HHHHHhcCCcchHHHHHHHHHHHhhhcC
Q 000184 531 ACVESADAVPALLWLLK---NGSANGKEIAAKTLNHLIHKSDTATISQ----LTALLTSDLPESKVYVLDALKSMLSVVS 603 (1890)
Q Consensus 531 ~~i~~~g~i~~Lv~ll~---~~~~~~~~~Aa~aL~~L~~~~~~~~i~~----L~~lL~~~~~~~~~~a~~aL~~L~~~~~ 603 (1890)
.+...++.+-.++. +..+.+++.|..+...+.+.-++.+++. ++.-+.+..-..+..+.+.++.+...++
T Consensus 210 ---~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap 286 (569)
T KOG1242|consen 210 ---FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP 286 (569)
T ss_pred ---CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch
Confidence 13445555555554 4456777777777666665555544444 3333444455678889999998877665
Q ss_pred chHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHH
Q 000184 604 FSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLA 683 (1890)
Q Consensus 604 ~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 683 (1890)
..- . .--...+|.+.+.|.+.++++|+.+..+|..++..-+. - .-...+|.|+..+.+++..+ .++...|+
T Consensus 287 ~qL--s--~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-~---dI~~~ip~Lld~l~dp~~~~-~e~~~~L~ 357 (569)
T KOG1242|consen 287 KQL--S--LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-P---DIQKIIPTLLDALADPSCYT-PECLDSLG 357 (569)
T ss_pred HHH--H--HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-H---HHHHHHHHHHHHhcCcccch-HHHHHhhc
Confidence 432 1 22255699999999999999999999999999975221 1 12346888888887766332 22233332
Q ss_pred HHHccCchhhHHHHHhCCChHHHHHHh----CCCCHHHHHHHHHHHHHHh--c-CchHHHHHHhcCcHHHHHHHHhcCCc
Q 000184 684 AIFLSVRENREVAAVARDALSPLVVLA----GSPVLEVAEQATCALANLI--L-DSEVSEKAIAEEIILPATRVLCEGTI 756 (1890)
Q Consensus 684 ~L~~~~~~~~~~~~~~~~~v~~Lv~ll----~~~~~ev~~~aa~aL~nL~--~-~~~~~~~~~~~~~v~~L~~ll~~~~~ 756 (1890)
.= . . ...++.-.+..++.++ ...+.+.+..++...+|++ . |+.. ...+-...++.|-+.+.+..+
T Consensus 358 ~t---t--F--V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~-lapfl~~Llp~lk~~~~d~~P 429 (569)
T KOG1242|consen 358 AT---T--F--VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD-LAPFLPSLLPGLKENLDDAVP 429 (569)
T ss_pred ce---e--e--eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH-HhhhHHHHhhHHHHHhcCCCh
Confidence 21 1 0 0022334444444444 4566778899999999998 2 3333 333346777778888888888
Q ss_pred chHHHHHHHHHHHhhcCc
Q 000184 757 SGKTLAAAAIARLLHSRK 774 (1890)
Q Consensus 757 ~~~~~aa~aL~~L~~~~~ 774 (1890)
++|..+++||..+.....
T Consensus 430 EvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 430 EVRAVAARALGALLERLG 447 (569)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 899999999988876433
No 73
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.22 E-value=5e-05 Score=83.28 Aligned_cols=226 Identities=19% Similarity=0.159 Sum_probs=163.1
Q ss_pred hcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCCh--HHHHHHHHHHHHHhccCchh
Q 000184 1240 AFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLE--REQHAAIAALVRLLSENPSR 1317 (1890)
Q Consensus 1240 ~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~--~~~~~A~~aL~~L~~~~~~~ 1317 (1890)
..+++..+.+...+++...|...|..|+. ++...+++.|+..|.+.+. -+|+.|+.+|+.+..
T Consensus 34 ~~~~i~~i~ka~~d~s~llkhe~ay~LgQ----------~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----- 98 (289)
T KOG0567|consen 34 GPAAIKAITKAFIDDSALLKHELAYVLGQ----------MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----- 98 (289)
T ss_pred ChHHHHHHHHhcccchhhhccchhhhhhh----------hccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----
Confidence 44567778888888877788888888886 4556789999999987655 468899999999983
Q ss_pred hHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhh----------HHHH---HhhCchHHHHHHHccCChH
Q 000184 1318 ALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRI----------RSTV---AAARCVEPLVSLLVTEFSP 1384 (1890)
Q Consensus 1318 ~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~----------~~~~---~~~~~i~~Lv~lL~~~~~~ 1384 (1890)
...++.|-++.++ +-..+++....++..+-.-..+ .... ...+.+..|-..|.+.+..
T Consensus 99 --------~~~~~~l~k~~~d-p~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~ 169 (289)
T KOG0567|consen 99 --------PESLEILTKYIKD-PCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKP 169 (289)
T ss_pred --------hhhHHHHHHHhcC-CccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchh
Confidence 3566777777743 4445665444444333111000 0000 1234466676666655443
Q ss_pred --HHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhc
Q 000184 1385 --AQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILH 1462 (1890)
Q Consensus 1385 --~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~ 1462 (1890)
-|+.|.-+|.++..++ +|..|.+-+..++.-.|..+..+||+|-+.. .|+.|.+.|.
T Consensus 170 l~~Ry~amF~LRn~g~Ee----------aI~al~~~l~~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~ 228 (289)
T KOG0567|consen 170 LFERYRAMFYLRNIGTEE----------AINALIDGLADDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLL 228 (289)
T ss_pred HHHHHhhhhHhhccCcHH----------HHHHHHHhcccchHHHHHHHHHHHhhccchh-----------hhHHHHHHHH
Confidence 4677777777776443 4778888888889999999999999999887 8999999997
Q ss_pred cCC--hhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHh
Q 000184 1463 EAP--DFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNI 1522 (1890)
Q Consensus 1463 ~~~--~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl 1522 (1890)
+.. +-|++++|++|+.+++- .+++.|.+.+.+++ +.++.++.-+|--+
T Consensus 229 d~~E~pMVRhEaAeALGaIa~e----------~~~~vL~e~~~D~~--~vv~esc~valdm~ 278 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIADE----------DCVEVLKEYLGDEE--RVVRESCEVALDML 278 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcCH----------HHHHHHHHHcCCcH--HHHHHHHHHHHHHH
Confidence 754 56999999999876653 45999999999888 88999888777654
No 74
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.20 E-value=0.00014 Score=84.98 Aligned_cols=341 Identities=16% Similarity=0.122 Sum_probs=214.7
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhh-------cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch
Q 000184 372 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN-------SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS 444 (1890)
Q Consensus 372 ~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~-------~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 444 (1890)
..++.++.....+...+.+..-+..+......+..+.. .-.-.+.+.+|...++-+.....+.+..++.....
T Consensus 68 ~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~ 147 (442)
T KOG2759|consen 68 KTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNC 147 (442)
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhccc
Confidence 44666666555444566666666666544433332221 11235567888888988888888888888776433
Q ss_pred hhHHHHhcC-cHHHHHHhhCC-CCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC--CHHHHHHHHHHHH
Q 000184 445 LWRALQGRE-GIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILR 520 (1890)
Q Consensus 445 ~~~~i~~~g-~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~e~a~~aL~ 520 (1890)
.-... +-. -...|..++.+ .+++....|+++|..+.. .++.|-.++.+.|+..++..+.+. +-++|-+...+++
T Consensus 148 ~~~~~-e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciW 225 (442)
T KOG2759|consen 148 KMELS-ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIW 225 (442)
T ss_pred cccch-HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHH
Confidence 11100 000 12444555555 677777889999999995 789999999999999999999433 6788899999999
Q ss_pred HHhcCChHHHHHHHhCCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHH--HHHHHhcCCcchHHHHHHHHHH
Q 000184 521 NLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQ--LTALLTSDLPESKVYVLDALKS 597 (1890)
Q Consensus 521 ~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~--L~~lL~~~~~~~~~~a~~aL~~ 597 (1890)
-|+. ++...+.+...+.|+.|.++++.. ..++.+-...++.|++...+...... ...++. ..+..++..
T Consensus 226 lLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-------~~v~k~l~~ 297 (442)
T KOG2759|consen 226 LLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-------CKVLKTLQS 297 (442)
T ss_pred Hhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-------cCchHHHHH
Confidence 9997 566667778889999999999975 45788888899999987653211111 000010 011222222
Q ss_pred Hhhhc-CchHHHHHhhhhcchHHHHHHHhcCCCHHH----HHHHHHHHHHHhhcChhH--------HHHHHHc--CchHH
Q 000184 598 MLSVV-SFSDILREGSAANDAVETMIKILSSTKEET----QAKSASALAGIFETRKDL--------RESSIAV--KTLWS 662 (1890)
Q Consensus 598 L~~~~-~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~----~~~A~~aL~~L~~~~~~~--------~~~~~~~--g~i~~ 662 (1890)
|.... +.+++... +..|-+-|.....++ .+.+---.+.|.|++... .+.+-+. ..+..
T Consensus 298 L~~rkysDEDL~~d-------i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellki 370 (442)
T KOG2759|consen 298 LEERKYSDEDLVDD-------IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKI 370 (442)
T ss_pred HHhcCCCcHHHHHH-------HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHH
Confidence 22211 12221111 222222222111000 111111223444443221 1222222 25889
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000184 663 VMKLLDV-GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 730 (1890)
Q Consensus 663 Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~ 730 (1890)
|+.+|.. .+|.+..-||.=++...++-|... ..+.+.||=+.+.+++.+++++|+-+|..|+-.|+.
T Consensus 371 L~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk-~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 371 LIKLLETSNDPIILCVACHDIGEYVRHYPEGK-AVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHhcCCCCceeehhhhhHHHHHHhCchHh-HHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9999954 457788889999999999887544 448899999999999999999999999999988763
No 75
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.0021 Score=80.82 Aligned_cols=365 Identities=17% Similarity=0.158 Sum_probs=215.5
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHcC
Q 000184 1332 LCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHG 1410 (1890)
Q Consensus 1332 L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~g 1410 (1890)
|.+=|++ ++..+...|..+++++++.+-.+ ...|...++++..++.+|.+|+.+..++. ..++..+.+
T Consensus 112 lknDL~s-~nq~vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f---- 180 (866)
T KOG1062|consen 112 LKNDLNS-SNQYVVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF---- 180 (866)
T ss_pred HHhhccC-CCeeehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh----
Confidence 3333444 35578888999999987654322 33455677888899999999999999888 777777765
Q ss_pred ChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhcc---------------CChhHHHHHHHH
Q 000184 1411 AVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHE---------------APDFLCSAFAEL 1475 (1890)
Q Consensus 1411 av~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~---------------~~~~v~~~aa~~ 1475 (1890)
+.+..++|.+.+..|--..+.-+..|+..+++.-.-+.+ +++.|+..|++ .++.++...-.+
T Consensus 181 -~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 181 -VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred -hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 778888888888888888888888888777665555555 77788887763 233344445555
Q ss_pred HHHHHhcccccCCcc---------------------ccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCccccccc
Q 000184 1476 LRILTNNAGIAKGPS---------------------AAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSL 1534 (1890)
Q Consensus 1476 l~~L~~~~~~~~~~~---------------------~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~ 1534 (1890)
|+.|..+..+.+..- -..+|..++.+ ...+..|.-|+.+|+..+.+.++...+
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I----~~~~~LrvlainiLgkFL~n~d~NirY-- 331 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI----RSNSGLRVLAINILGKFLLNRDNNIRY-- 331 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc----cCCchHHHHHHHHHHHHhcCCccceee--
Confidence 665655543332110 11133333222 222556677778888776665444333
Q ss_pred ccCCch---------------hhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHH
Q 000184 1535 TSHQAI---------------EPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRA 1599 (1890)
Q Consensus 1535 ~~~~~i---------------~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A 1599 (1890)
...+.+ ..+++-|+++|+.||..|++.+..|......+ ..+..|+.+|.+.+++.|...
T Consensus 332 vaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~------~mv~eLl~fL~~~d~~~k~~~ 405 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVR------VMVKELLEFLESSDEDFKADI 405 (866)
T ss_pred eehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHH------HHHHHHHHHHHhccHHHHHHH
Confidence 111111 23344567777777777777777776633332 245677777777788888777
Q ss_pred HHHHHHHhcc--ChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchh-hhcc---cchHHHHHhhccCC
Q 000184 1600 VKALVSIALT--WPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSE-FYLE---VPVAVLVRLLRSGS 1673 (1890)
Q Consensus 1600 ~~aL~~l~~~--~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~~~---~~v~~Lv~ll~~~~ 1673 (1890)
+.-+..++.. +.++ + -|+.+++.+....+.++..++-..+.++++-. .... +... .++...- ++....
T Consensus 406 as~I~~laEkfaP~k~-W---~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~-~e~~~y~~~rLy~a~~~~~-~~~is~ 479 (866)
T KOG1062|consen 406 ASKIAELAEKFAPDKR-W---HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAF-QELHEYAVLRLYLALSEDT-LLDISQ 479 (866)
T ss_pred HHHHHHHHHhcCCcch-h---HHHHHHHHHHhcccccchhhHHHHHHHHhcCC-cchhhHHHHHHHHHHhhhh-hhhhhh
Confidence 7777777632 2211 1 14777777777666677666665555555432 1111 1100 0111111 223344
Q ss_pred hhHHHHHHHHHHHhhc-----CChhhHHHHHHcccHHHHHHHHccC-CcHHHHHHHHHHHh
Q 000184 1674 EGTVIGSLNALLVLES-----DDGTSAEAMAESGAIEALLELLRSH-QCEETAARLLEVLL 1728 (1890)
Q Consensus 1674 ~~v~~~a~~aL~~L~~-----~~~~~~~~i~~~g~i~~Li~lL~~~-~~~~~a~~al~~L~ 1728 (1890)
+.+...|.++++.-+. .+...-..+.++.++..|..++.++ .....-..++.+|.
T Consensus 480 e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~ 540 (866)
T KOG1062|consen 480 EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALL 540 (866)
T ss_pred hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5556666666665431 1111123456677888888888773 23444455555553
No 76
>PF05536 Neurochondrin: Neurochondrin
Probab=98.12 E-value=0.0061 Score=78.47 Aligned_cols=239 Identities=23% Similarity=0.258 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchh---hHhhhhhccCCchHHHHHHhhc-------CCHHHHHHHHHH
Q 000184 19 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE---NAFSAVGSHSQAVPVLVSLLRS-------GSLAVKIQAATV 88 (1890)
Q Consensus 19 ~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~---~~r~~i~~~~g~v~~Lv~lL~~-------~~~~~~~~aa~~ 88 (1890)
...+.+++..|+..+ +++|..++..+-.+.+..+ ..++.|.. +=+++-+-.+|++ +....+.-+..+
T Consensus 4 ~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 4 SASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred hHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 457999999999875 6899999999999998766 22333443 3345667778887 234788889999
Q ss_pred HHHhhccchhhHHHHhcCChHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCC
Q 000184 89 LGSLCKENELRVKVLLGGCIPPLLGLLKSSSA-EGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSG 167 (1890)
Q Consensus 89 L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~ 167 (1890)
|+.+|..++....---.+.||.|++.+.+.+. +...-|...|..++. ...|.+.+.+.|++|.|.+.+.. .
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias----~~~G~~aLl~~g~v~~L~ei~~~----~ 152 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS----SPEGAKALLESGAVPALCEIIPN----Q 152 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc----CcHhHHHHHhcCCHHHHHHHHHh----C
Confidence 99999877754333333579999999987776 888889999999997 66788999999999999999887 2
Q ss_pred chHHHHHHHHHHHhccCChh-HHHH--HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchh-hhHhhc----cch
Q 000184 168 NVVDNLLTGALRNLSTSTEG-FWAA--TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSV-CSRVLA----ADA 239 (1890)
Q Consensus 168 ~~v~~~~~~~L~~L~~~~~~-~~~~--i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~-~~~i~~----~g~ 239 (1890)
+.....+..+|.+++...+. .|.. -.-...++.+...........+...+..|..+....+.. ...... ...
T Consensus 153 ~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l 232 (543)
T PF05536_consen 153 SFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDL 232 (543)
T ss_pred cchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHH
Confidence 33556777788887764431 1110 000123455666666666777788888887776444210 111111 222
Q ss_pred HHHHHHHHcCCCCHhHHHHHHHHHHHhhh
Q 000184 240 TKQLLKLLGSGNEASVRAEAAGALKSLSD 268 (1890)
Q Consensus 240 i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~ 268 (1890)
..-+..+|++....+.|..+......+..
T Consensus 233 ~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 233 RKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33455666666555666666655555544
No 77
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00012 Score=87.72 Aligned_cols=322 Identities=14% Similarity=0.090 Sum_probs=187.1
Q ss_pred hhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCCh-hhH
Q 000184 1367 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP-SCK 1445 (1890)
Q Consensus 1367 ~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~-~~~ 1445 (1890)
-.+.++|.+..+.+.+..+|++||++|++++.-........-..+...|+++..+.+..+|..|- -|-.+-++-. +..
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIVte~~ 160 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIVTESA 160 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhccccc
Confidence 45678999999999999999999999999982221111222344568889999999999887774 2222222110 001
Q ss_pred HHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcC
Q 000184 1446 LEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEH 1525 (1890)
Q Consensus 1446 ~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~ 1525 (1890)
..+-=.+.+|.|-+-+..-++..+....+-+..|-+.+...-...-...++-|++.|+++. +++|.-+=.+|++++..
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s--~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSS--DEVRTLTDTLLSEFLAE 238 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHHH
Confidence 1222233556666666666666666666666655444432222223456888999999877 88887666666666433
Q ss_pred CCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCH-HHHHHHHHHH-
Q 000184 1526 PQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIH-ILQQRAVKAL- 1603 (1890)
Q Consensus 1526 ~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~-~v~~~A~~aL- 1603 (1890)
-.+.... ....+.++.++.-+.++++.+|..|..-+..+..-.--.-.....|.+..+...+.++.+ .+++.|...=
T Consensus 239 I~s~P~s-~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~ 317 (675)
T KOG0212|consen 239 IRSSPSS-MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNG 317 (675)
T ss_pred HhcCccc-cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHH
Confidence 2222111 155678999999999999999999986666554311111112223444555555544444 4555554432
Q ss_pred --HHHhccChh-HHHhhcC-hHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHH
Q 000184 1604 --VSIALTWPN-EIAKEGG-VTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIG 1679 (1890)
Q Consensus 1604 --~~l~~~~~~-~l~~~g~-I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~ 1679 (1890)
.++-..... .-.+.|. |+.|.+.+.++....|.++.. =+..+.+-..+.-..+...-.++|++-|++.+.+|...
T Consensus 318 ~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~-Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~ 396 (675)
T KOG0212|consen 318 LLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLN-WIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLL 396 (675)
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHH
Confidence 333221111 0134433 455556666544333333332 11111221111111333346889999999999999999
Q ss_pred HHHHHHHhhcCChh
Q 000184 1680 SLNALLVLESDDGT 1693 (1890)
Q Consensus 1680 a~~aL~~L~~~~~~ 1693 (1890)
+...+++++.....
T Consensus 397 ~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 397 ALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHhcCccc
Confidence 99999999975433
No 78
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.10 E-value=0.0016 Score=84.83 Aligned_cols=398 Identities=16% Similarity=0.129 Sum_probs=254.0
Q ss_pred ccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchH
Q 000184 1293 NTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVE 1372 (1890)
Q Consensus 1293 ~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~ 1372 (1890)
++....+|.+++.-+++++..-+... +..+.++.+..+..+. ++.+++.|...+..+.+.-+-.. -......+
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~-----~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~ 319 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEI-----VKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD-DVVKSLTE 319 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHH-----HHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch-hhhhhhhH
Confidence 45666788888898999887443322 3467888888888876 56899988877776543311111 22345567
Q ss_pred HHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccC-ChhhHHHHHHc
Q 000184 1373 PLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD-RPSCKLEMVKA 1451 (1890)
Q Consensus 1373 ~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~l~~~ 1451 (1890)
.++....+++..+++........+...-.. ......-+++...++.+...++|.++..=..+++.. +..+...+...
T Consensus 320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~ 397 (759)
T KOG0211|consen 320 SLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS 397 (759)
T ss_pred HHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchh
Confidence 889999999999999999888888721111 111234467888888887777776665444444433 12344555666
Q ss_pred CcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccc
Q 000184 1452 GVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRAD 1531 (1890)
Q Consensus 1452 ~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~ 1531 (1890)
.+++.+..+..+....++...|..+..+.-... ....-....+.++..+++.+ +.|+.+....+..+-..++....
T Consensus 398 ~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~--~~V~lnli~~ls~~~~v~~v~g~ 473 (759)
T KOG0211|consen 398 SILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDED--PIVRLNLIDKLSLLEEVNDVIGI 473 (759)
T ss_pred hhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhh--HHHHHhhHHHHHHHHhccCcccc
Confidence 677888888888877777666554433321111 11123345666777888766 99999888766655443332222
Q ss_pred cccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh
Q 000184 1532 YSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWP 1611 (1890)
Q Consensus 1532 ~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~ 1611 (1890)
. .....-++.++.+-.+....++.+..+.+-.++.... . .+.....-+.+...+.+....++++|++.+..+....-
T Consensus 474 ~-~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~-~-~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G 550 (759)
T KOG0211|consen 474 S-TVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG-V-EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG 550 (759)
T ss_pred h-hhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh-h-HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC
Confidence 1 2455667777777777778888888888877776321 1 11111222444445677888999999999998853211
Q ss_pred hHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCC
Q 000184 1612 NEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDD 1691 (1890)
Q Consensus 1612 ~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~ 1691 (1890)
..=..+-.|+.++.+..+++-.+|....- ++..+.++. ...++.+.-+|++.++..+..+.||-.++..|..+....
T Consensus 551 ~~w~~~~~i~k~L~~~~q~~y~~R~t~l~-si~~la~v~--g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 551 SEWARLEEIPKLLAMDLQDNYLVRMTTLF-SIHELAEVL--GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred cchhHHHhhHHHHHHhcCcccchhhHHHH-HHHHHHHHh--ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 11122334788888877665556666555 555666654 233555667899999999999999999999998887643
Q ss_pred hhhHHHHHHcccHHHHHHHHcc
Q 000184 1692 GTSAEAMAESGAIEALLELLRS 1713 (1890)
Q Consensus 1692 ~~~~~~i~~~g~i~~Li~lL~~ 1713 (1890)
... ...+-|.|+...|..
T Consensus 628 ~~~----~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 628 DES----VRDEEVLPLLETLSS 645 (759)
T ss_pred chH----HHHHHHHHHHHHhcc
Confidence 221 124566666666655
No 79
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0017 Score=72.69 Aligned_cols=396 Identities=15% Similarity=0.161 Sum_probs=241.7
Q ss_pred HHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCCh--hhHH--HHHHcC
Q 000184 1377 LLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP--SCKL--EMVKAG 1452 (1890)
Q Consensus 1377 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~--~~~~--~l~~~~ 1452 (1890)
+.+...++...-++..|..|+...+.... ..+..+.|-.-|..++..|+.-+++-++.+-.+.+ .+.. .++..+
T Consensus 51 feNenhrekttlcVscLERLfkakegahl--apnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNae 128 (524)
T KOG4413|consen 51 FENENHREKTTLCVSCLERLFKAKEGAHL--APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAE 128 (524)
T ss_pred cccccccchhhhHHHHHHHHHhhccchhh--chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhh
Confidence 33333344434466666666632222222 13345566666778888999999888887776643 2222 237899
Q ss_pred cHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHH--HHHhhccCCChhhHHHHHHHHHHhhcC-CCcc
Q 000184 1453 VIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPL--FLLLTRSEFGPDGQHSALQVLVNILEH-PQCR 1529 (1890)
Q Consensus 1453 ~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~L--i~lL~~~~~~~~v~~~al~aL~nl~~~-~~~~ 1529 (1890)
+++.++..+-.++++|...+.+.+..++-.+..-.....++..+++ .++-.+ .+.-+|...+..+..+..- +++.
T Consensus 129 ilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaak--cndiaRvRVleLIieifSiSpesa 206 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAK--CNDIARVRVLELIIEIFSISPESA 206 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhh--hhhHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999888888888877666544444444444443 333333 2356676677777777433 3443
Q ss_pred cccccccCCchhhhhhccCC-CCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHh--cCCCHHHHHHHHHHHHHH
Q 000184 1530 ADYSLTSHQAIEPLIPLLDS-PAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL--GSGIHILQQRAVKALVSI 1606 (1890)
Q Consensus 1530 ~~~~~~~~~~i~~Lv~lL~s-~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL--~s~~~~v~~~A~~aL~~l 1606 (1890)
... ...|.+..|..=|+. +|.-|+....+....++..+..++.+.+.|.|+.+...+ .+.+|.-+.+++...+++
T Consensus 207 nec--kkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 207 NEC--KKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred hHh--hhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 343 667778888887775 778888888999999998888888888889888888887 356777777777777665
Q ss_pred hccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHH
Q 000184 1607 ALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLV 1686 (1890)
Q Consensus 1607 ~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~ 1686 (1890)
-... .+.+ . +..+.++.... ++.....+.++.|+..+++|..+|+.
T Consensus 285 fgke--aimd---------v-------seeaicealii----------------aidgsfEmiEmnDpdaieaAiDalGi 330 (524)
T KOG4413|consen 285 FGKE--AIMD---------V-------SEEAICEALII----------------AIDGSFEMIEMNDPDAIEAAIDALGI 330 (524)
T ss_pred hcch--HHhh---------c-------CHHHHHHHHHH----------------HHHhhHHhhhcCCchHHHHHHHHHHh
Confidence 3211 1111 0 11122331111 23344566778899999999999999
Q ss_pred hhcCChhhHHHHHHcc--cHHHHHHHHcc---CCcHHHHHHHHHHHhhchhhhhhhhccccccccccccCChHHHHHHHH
Q 000184 1687 LESDDGTSAEAMAESG--AIEALLELLRS---HQCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQTQAQQAR 1761 (1890)
Q Consensus 1687 L~~~~~~~~~~i~~~g--~i~~Li~lL~~---~~~~~~a~~al~~L~~~~~~r~~i~~~~~i~~L~~~~~~~~~~~~~~~ 1761 (1890)
++++....... .+.| .-+.|+.-..+ +..++++.++|.++...-.... .-..|+....+ .+
T Consensus 331 lGSnteGadll-lkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkp------------eqitDgkaeer-lr 396 (524)
T KOG4413|consen 331 LGSNTEGADLL-LKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKP------------EQITDGKAEER-LR 396 (524)
T ss_pred ccCCcchhHHH-hccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCCh------------hhccccHHHHH-HH
Confidence 98765443332 2222 33444443333 4578888888888765211000 00122211111 11
Q ss_pred HHHHHhcchhhhhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHHHHh
Q 000184 1762 LLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLI 1837 (1890)
Q Consensus 1762 ~la~l~~~~~~~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~~ll 1837 (1890)
|+-+-+...++ ...-..-...+++- |.+|++-.|.+.+-.++..+..-++.+...|.|+...+--
T Consensus 397 clifdaaaqst----------kldPleLFlgilqQ-pfpEihcAalktfTAiaaqPWalkeifakeefieiVtDas 461 (524)
T KOG4413|consen 397 CLIFDAAAQST----------KLDPLELFLGILQQ-PFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDAS 461 (524)
T ss_pred HHHHHHHhhcc----------CCChHHHHHHHHcC-CChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccc
Confidence 21111111110 00122233455555 5899999999999999977777788888888888766543
No 80
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0023 Score=79.92 Aligned_cols=423 Identities=15% Similarity=0.140 Sum_probs=233.4
Q ss_pred cHHHHHHHHhcCCcchhHHHHHHHHHHhhcCHHHHHhhhhcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhh
Q 000184 1201 ALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAES 1280 (1890)
Q Consensus 1201 ~l~~Lv~~L~~~~~~~q~~a~~~ll~~l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~ 1280 (1890)
..|..++-..+.+.++..-.--.|++.-..+++.. .=.|..+...|++.+.-.|..|.++|..+ |..+.
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsI------Rvp~I 140 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSI------RVPMI 140 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhH
Confidence 34555555555444443333333443333333321 13688899999999999999888877653 22222
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChh
Q 000184 1281 ARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR 1360 (1890)
Q Consensus 1281 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~ 1360 (1890)
..=.+-.+-+...+....+|..|+.|+-.|-.-.+..+. ..++.+-++|.+. +.-|...|..+....+-+.
T Consensus 141 aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~-------qL~e~I~~LLaD~-splVvgsAv~AF~evCPer- 211 (968)
T KOG1060|consen 141 APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKD-------QLEEVIKKLLADR-SPLVVGSAVMAFEEVCPER- 211 (968)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHH-------HHHHHHHHHhcCC-CCcchhHHHHHHHHhchhH-
Confidence 111122233445678889999999999998874433331 2445566677765 5577777777766553221
Q ss_pred hHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc----C-------------------------------CchHHHH
Q 000184 1361 IRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV----D-------------------------------DEQLAEL 1405 (1890)
Q Consensus 1361 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~----~-------------------------------~~~~~~~ 1405 (1890)
..-+ .+-...|-.+|-+-++-.+......|...+ - |++.+..
T Consensus 212 -ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lL 288 (968)
T KOG1060|consen 212 -LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLL 288 (968)
T ss_pred -HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHH
Confidence 1111 111223333333333333444444443333 1 1121111
Q ss_pred HHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccc
Q 000184 1406 VAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGI 1485 (1890)
Q Consensus 1406 ~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~ 1485 (1890)
++..-.+|++.|+.|-.+++.+++.++..+.. ..++.+|+++|...... +.. .|.+++....-
T Consensus 289 ------L~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~~~v-qyv---vL~nIa~~s~~ 351 (968)
T KOG1060|consen 289 ------LQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSNREV-QYV---VLQNIATISIK 351 (968)
T ss_pred ------HHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcCCcc-hhh---hHHHHHHHHhc
Confidence 23344677889999999999999999966412 23678999999775542 221 22233332221
Q ss_pred cCCccccCChHHHHHH-hhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHH
Q 000184 1486 AKGPSAAKVVEPLFLL-LTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSH 1564 (1890)
Q Consensus 1486 ~~~~~~~~~v~~Li~l-L~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~ 1564 (1890)
+ .+..+|-++- .-++.....++.-=++.|.+|+... .....++-+-.+.++.+..+-..++.++++
T Consensus 352 ~-----~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~es--------ni~~ILrE~q~YI~s~d~~faa~aV~AiGr 418 (968)
T KOG1060|consen 352 R-----PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANES--------NISEILRELQTYIKSSDRSFAAAAVKAIGR 418 (968)
T ss_pred c-----hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc--------cHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 1 1223333332 2222223344445678888884211 112234555556678887888899999999
Q ss_pred hhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHH
Q 000184 1565 LLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAAS 1644 (1890)
Q Consensus 1565 l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~ 1644 (1890)
++.. -.-.+..++..|+.++.+++..|...|+..|..+-...|.+.. ..|.+|.+++.+-. +. .+....+|
T Consensus 419 CA~~----~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~--~ii~~La~lldti~--vp-~ARA~IiW 489 (968)
T KOG1060|consen 419 CASR----IGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL--EILFQLARLLDTIL--VP-AARAGIIW 489 (968)
T ss_pred HHHh----hCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH--HHHHHHHHHhhhhh--hh-hhhceeee
Confidence 9872 1112346789999999999999999999999999876654421 23567777774321 11 11111233
Q ss_pred HHHhhhhhchh--hhcccchHHHHHhhccCChhHHHHHHHHHHHhh
Q 000184 1645 VLSSILQFSSE--FYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLE 1688 (1890)
Q Consensus 1645 ~l~~~~~~~~~--~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~ 1688 (1890)
.++.+. +. .+.-..+-.+++-..+++++++-+....-..|-
T Consensus 490 Lige~~---e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 490 LIGEYC---EIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLY 532 (968)
T ss_pred eehhhh---hhcchhchHHHHHHHHhhccccchhhHHHHHhhhhhe
Confidence 333221 11 000012333444455677788877766555553
No 81
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.01 E-value=5.9e-05 Score=73.68 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=111.2
Q ss_pred CcHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHH
Q 000184 411 EAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 489 (1890)
Q Consensus 411 g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 489 (1890)
+.+..||.-.. ..+.+.++..+.-|.|.+.+ +.++..+.+..++..+++-|..++..+.+.+.+.|||+|. ++.+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHH
Confidence 44555665554 56889999999999999988 6788899999999999999999999999999999999995 789999
Q ss_pred HHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhh
Q 000184 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK 547 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~ 547 (1890)
.|.+++++|..+..+.++.......++..|..|+..+...|..+.+ |+.++.++
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~ 147 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ 147 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence 9999999999999999999999999999999999865566766654 44444443
No 82
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.00 E-value=0.00049 Score=80.03 Aligned_cols=268 Identities=16% Similarity=0.132 Sum_probs=188.5
Q ss_pred hhhhhcCcHHHHHHHhcCCCHH--HHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCC-CCHHHHHHHHHHHHHcc
Q 000184 405 IKLENSEAKRLLVGLITMATNE--VQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLS 481 (1890)
Q Consensus 405 ~~l~~~g~i~~Lv~lL~~~~~~--v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~ 481 (1890)
..+...|++..|+.++..++.. ++..+.+.|..+... +++..+..-| ...++.+.+. ...+.+...++.|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 4677789999999999987654 488899988876553 4556665544 4455555443 46788888999999999
Q ss_pred cCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHH
Q 000184 482 NENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS-EDIRACVESADAVPALLWLLKNGSANGKEIAAKT 560 (1890)
Q Consensus 482 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~a 560 (1890)
+++.+..+.+++.|+++.++-.+...++.+-.+|+.+|+|++.+. .+.+..+++..+-+.|.-+-.+.++-.+-.|+-+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 988889999999999999999999999999999999999999753 4567778888888888888777777888999999
Q ss_pred HHHHhcCCC-------CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHH
Q 000184 561 LNHLIHKSD-------TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQ 633 (1890)
Q Consensus 561 L~~L~~~~~-------~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~ 633 (1890)
.+-++...+ ++++...-.++.+-+|.. .|.++ .+.. .-...+-+..|+.+|.+..-+.|
T Consensus 331 V~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~--FARD~----------hd~a--QG~~~d~LqRLvPlLdS~R~EAq 396 (832)
T KOG3678|consen 331 VAVLATNKEVEREVRKSGTLALVEPLVASLDPGR--FARDA----------HDYA--QGRGPDDLQRLVPLLDSNRLEAQ 396 (832)
T ss_pred HhhhhhhhhhhHHHhhccchhhhhhhhhccCcch--hhhhh----------hhhh--ccCChHHHHHhhhhhhcchhhhh
Confidence 998887554 122222222233334431 00000 0000 11224457888899988877777
Q ss_pred HHHHHHHHHHhhc--ChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccC
Q 000184 634 AKSASALAGIFET--RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSV 689 (1890)
Q Consensus 634 ~~A~~aL~~L~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 689 (1890)
..++.-++.=+.- -....+.+.+.|+|..|-++..+.+....+-|..+|.-|....
T Consensus 397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEV 454 (832)
T KOG3678|consen 397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEV 454 (832)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcccc
Confidence 7777655533322 1112234667899999999999888776777777776664443
No 83
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.0034 Score=77.71 Aligned_cols=401 Identities=13% Similarity=0.092 Sum_probs=227.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHh
Q 000184 414 RLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 493 (1890)
Q Consensus 414 ~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~ 493 (1890)
+-++.+|.+.-+-+|+.|+..+..++.. +-+++. -.+|.|++-|.++++.++.+|+.++|.|++.+|.+--.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLk---YPeAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~--- 218 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLK---YPEALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ--- 218 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHh---hhHhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc---
Confidence 4577899999999999999999998864 334454 57899999999999999999999999999887765322
Q ss_pred cCCcHHHHHhccCCCH-HHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCCh-hHHHHHHHHHH--HHhc-CC
Q 000184 494 AGGIPPLVQILESGSA-KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLN--HLIH-KS 568 (1890)
Q Consensus 494 ~g~i~~Lv~lL~~~~~-~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~-~~~~~Aa~aL~--~L~~-~~ 568 (1890)
.-|.+..+|-+.+. =+--.....+++|+--.|... ...+++|.+++.+... ...-.+..++. +++. ++
T Consensus 219 --LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~ 291 (877)
T KOG1059|consen 219 --LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMS 291 (877)
T ss_pred --ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCC
Confidence 45677778766532 233446667777776544444 3478999999987542 22222222221 2322 22
Q ss_pred CC-C----cHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000184 569 DT-A----TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 643 (1890)
Q Consensus 569 ~~-~----~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L 643 (1890)
+. . .+..|-.++.+.++..|-.++.|++.++... +..+++. -..++.+|.+.|+.+|-.|...|..+
T Consensus 292 d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktH--p~~Vqa~------kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 292 DHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTH--PKAVQAH------KDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred CcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhC--HHHHHHh------HHHHHHHhccCCchhHHHHHHHHHHH
Confidence 32 1 2333445567778888777777777665443 3323322 45678899999999999999999888
Q ss_pred hhcChhHHHHHHHcCchHHHHHhh-cCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCC-ChHHHHHHhCCCCHHHHHHH
Q 000184 644 FETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVAAVARD-ALSPLVVLAGSPVLEVAEQA 721 (1890)
Q Consensus 644 ~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~-~v~~Lv~ll~~~~~ev~~~a 721 (1890)
... +... .++..|+.-+ ..+....+-.-+.-+..+|+...+.. +.+-. .+..|++|.+-+..+.=+.-
T Consensus 364 Vsk-kNl~------eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~---ItdFEWYlsVlveLa~l~~~~~G~~I 433 (877)
T KOG1059|consen 364 VSK-KNLM------EIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQY---ITDFEWYLSVLVELARLEGTRHGSLI 433 (877)
T ss_pred hhh-hhHH------HHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhh---hhhHHHHHHHHHHHHhccccchhhHH
Confidence 864 2222 2455665555 33333556666666666765543211 11211 23444555544432222222
Q ss_pred HHHHHHHhcCch-HHHHHHhcCcHHHHHHHHh---------cC--CcchHHHHHHHHHHHhhcCccchhHhhhhhhhccH
Q 000184 722 TCALANLILDSE-VSEKAIAEEIILPATRVLC---------EG--TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTV 789 (1890)
Q Consensus 722 a~aL~nL~~~~~-~~~~~~~~~~v~~L~~ll~---------~~--~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l 789 (1890)
+.=+.+++.+-+ .+...+ .....++. .. -.++-..|+|+++..+......+ +++
T Consensus 434 ~eQi~Dv~iRV~~iR~fsV-----~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~~---------~~l 499 (877)
T KOG1059|consen 434 AEQIIDVAIRVPSIRPFSV-----SQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENPN---------DTL 499 (877)
T ss_pred HHHHHHHheechhhhHhHH-----HHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhCHH---------HHH
Confidence 233333332211 121111 11111111 11 23477899999998886555433 333
Q ss_pred HHHHHHhhc---cC-cccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHH
Q 000184 790 LALVSFLES---AS-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRL 864 (1890)
Q Consensus 790 ~~li~~l~~---~~-~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l 864 (1890)
..+.+--.+ .+ ..|........+.+++.+.+-.. ..+ .+...+..+++.|-+......-++|+.|.+++..+
T Consensus 500 eamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~-~~e--~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li 575 (877)
T KOG1059|consen 500 EAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETK-DFE--GIVSLVNLILSFLEQFSGSSDLEVQERASEVLELI 575 (877)
T ss_pred HHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCccc-chh--HHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Confidence 333321110 01 33443445555555544333210 000 11111222344444444455689999999988766
No 84
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.97 E-value=0.00027 Score=85.42 Aligned_cols=175 Identities=17% Similarity=0.155 Sum_probs=127.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcC----CCHHHHHHHHHHHHHHHccCchh
Q 000184 617 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV----GSECILVEASRCLAAIFLSVREN 692 (1890)
Q Consensus 617 ~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~L~~~~~~~ 692 (1890)
-..++..++.+++..++..|+..|..+....+...... ..+.++.++..+.+ ++.+.+.-+++++.++.+.. .
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~--~ 182 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK--E 182 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH--H
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc--h
Confidence 36778889999999999999999999998765443321 24667888877753 44456788999999997653 6
Q ss_pred hHHHHHhCCChHHHHHHh-----CC--CCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcc-hHHHHHH
Q 000184 693 REVAAVARDALSPLVVLA-----GS--PVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAA 764 (1890)
Q Consensus 693 ~~~~~~~~~~v~~Lv~ll-----~~--~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~-~~~~aa~ 764 (1890)
.|..+++.++++.|.+++ .+ ....++-++..++|-|..+++...++...++++.|+++++....+ +-+-+..
T Consensus 183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHH
Confidence 777799999999999999 22 345677999999999999999999999888999999999998865 8888999
Q ss_pred HHHHHhhcCc--cchhHhhhhhhhccHHHHHHHhhcc
Q 000184 765 AIARLLHSRK--IDYTITDCVNRAGTVLALVSFLESA 799 (1890)
Q Consensus 765 aL~~L~~~~~--~~~~~~~~~~~~g~l~~li~~l~~~ 799 (1890)
+|.|++.... ....|.. +.+++++..|...
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~-----~~~l~~l~~L~~r 294 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVL-----CGLLKTLQNLSER 294 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHH-----H-HHHHHHHHHSS
T ss_pred HHHHHHhccHHHHHHHHHH-----ccHHHHHHHHhcC
Confidence 9999997555 2333322 4555566666653
No 85
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0019 Score=77.74 Aligned_cols=420 Identities=15% Similarity=0.106 Sum_probs=240.8
Q ss_pred HhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHh-----ccCChHHHHHHHHHHHHH--hccCchhhHHHHh
Q 000184 1251 LRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEIL-----NTGLEREQHAAIAALVRL--LSENPSRALAVAD 1323 (1890)
Q Consensus 1251 L~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL-----~~~~~~~~~~A~~aL~~L--~~~~~~~~~~~~~ 1323 (1890)
|.+...+-|-.||.-+.++...--+ -++..-|..+++.| .++....|+.++.+|... +-+.+.-.+.
T Consensus 9 ltdKlYekRKaaalelEk~Vk~l~~---~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~--- 82 (675)
T KOG0212|consen 9 LTDKLYEKRKAAALELEKLVKDLVN---NNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYL--- 82 (675)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHH---
Confidence 3344455666666666665431000 01111233344422 333333444444444333 2344443333
Q ss_pred hhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCc-hH
Q 000184 1324 VEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDE-QL 1402 (1890)
Q Consensus 1324 v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~-~~ 1402 (1890)
.+.++|.+.-+++. +..++..|...+.+++.-..+.....-......|-++..+.+..++.. ++-|-.+..|. ..
T Consensus 83 --~~iv~Pv~~cf~D~-d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte 158 (675)
T KOG0212|consen 83 --EKIVPPVLNCFSDQ-DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTE 158 (675)
T ss_pred --HHhhHHHHHhccCc-cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccc
Confidence 47899999999875 678999999999887543332222222333444555555555555544 47776665211 10
Q ss_pred HH-HHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHH-H
Q 000184 1403 AE-LVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRIL-T 1480 (1890)
Q Consensus 1403 ~~-~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L-~ 1480 (1890)
.. .+--.+.++.|-+-+...++..|..-+.=|..+-.. |+....=-=...++.|..+|.++.++++...-.++..+ .
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 01 111134566666777788999999998877666544 23221112234778889999999998886655444333 1
Q ss_pred hcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCH-HHHHHHH
Q 000184 1481 NNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAP-AVQQLAA 1559 (1890)
Q Consensus 1481 ~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~-~vq~~A~ 1559 (1890)
..........-...++.++.-+.+++ +..|..|+..|..+..-+...-.. --.+++..++..+.+..+ .+++.+.
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~--~~iq~~al~Wi~efV~i~g~~~l~--~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSE--PEIQLKALTWIQEFVKIPGRDLLL--YLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHhcCccccCcccchhhccccccCCc--HHHHHHHHHHHHHHhcCCCcchhh--hhhhhhhhcccCCCCCccccHHHHHH
Confidence 11111111123457888888888888 989988887777776655444332 445666777777776665 4666665
Q ss_pred HHH---HHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHH--HhhcChHHHHHHHhhcCCCC
Q 000184 1560 ELL---SHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEI--AKEGGVTELSKIILQADPSL 1634 (1890)
Q Consensus 1560 ~aL---~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l--~~~g~I~~Ll~~l~~~~~~~ 1634 (1890)
..- ..+-..+...+++.-...++.|.+.+.++..+.|..++.=+.-+=...|+.+ ..+..-+.|++.+.+.++
T Consensus 314 ~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd-- 391 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD-- 391 (675)
T ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh--
Confidence 433 3333333333332222345888888899999999999998888877777762 233445788888887665
Q ss_pred cHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHHhhc
Q 000184 1635 PHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLES 1689 (1890)
Q Consensus 1635 ~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 1689 (1890)
.+...++.+++++.......---..+-.|+.+...+..-+...+...+.+|+.
T Consensus 392 --~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 392 --EVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred --HHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 45566888888887444322111123344444445555566666666666653
No 86
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.0096 Score=73.95 Aligned_cols=247 Identities=12% Similarity=0.068 Sum_probs=160.9
Q ss_pred CCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHH
Q 000184 164 LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQL 243 (1890)
Q Consensus 164 ~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L 243 (1890)
+.+.|.++..+...|..++..-++. ++ ..+|.|++-|.++|+.++..|..+++.|+..++.+.-.+ -|.+
T Consensus 154 ~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~f 223 (877)
T KOG1059|consen 154 NSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLF 223 (877)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHH
Confidence 4467888888888887776433322 22 358999999999999999999999999998888765444 5778
Q ss_pred HHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCch
Q 000184 244 LKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSN 323 (1890)
Q Consensus 244 v~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~ 323 (1890)
.++|......-+-.-......+|+--.|.-+.. -+++|..++.+++ ...+...|+.+....
T Consensus 224 fkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~--------AmSLlYECvNTVVa~------ 284 (877)
T KOG1059|consen 224 YKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTV--------AMSLLYECVNTVVAV------ 284 (877)
T ss_pred HHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhH--------HHHHHHHHHHHheee------
Confidence 888876544445556666777777666654433 4788888887654 233444444332211
Q ss_pred hhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCcc
Q 000184 324 VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLL 403 (1890)
Q Consensus 324 ~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 403 (1890)
.++.+.++.
T Consensus 285 ----------------------------------------------------s~s~g~~d~------------------- 293 (877)
T KOG1059|consen 285 ----------------------------------------------------SMSSGMSDH------------------- 293 (877)
T ss_pred ----------------------------------------------------hhccCCCCc-------------------
Confidence 011111110
Q ss_pred chhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccC
Q 000184 404 SIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNE 483 (1890)
Q Consensus 404 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~ 483 (1890)
...+ .=|+..|-.++.+.|+..+.-++.++..+...|+.. +. .-.+.++++|.+.++.+|..|.-.|..++.
T Consensus 294 ~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~---Vq--a~kdlIlrcL~DkD~SIRlrALdLl~gmVs- 365 (877)
T KOG1059|consen 294 SASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA---VQ--AHKDLILRCLDDKDESIRLRALDLLYGMVS- 365 (877)
T ss_pred HHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH---HH--HhHHHHHHHhccCCchhHHHHHHHHHHHhh-
Confidence 0000 014445556777889999999999999998876642 22 235678899999999999999999999984
Q ss_pred ChhcHHHHHhcCCcHHHHHhccCCC-HHHHHHHHHHHHHHhc
Q 000184 484 NDDSKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCN 524 (1890)
Q Consensus 484 ~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~e~a~~aL~~L~~ 524 (1890)
.+|-..| +..|+..+...+ ...|..-+.-+-.+|.
T Consensus 366 -kkNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 366 -KKNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred -hhhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 5555444 345555554433 3556555555555554
No 87
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.90 E-value=0.0058 Score=73.94 Aligned_cols=518 Identities=16% Similarity=0.133 Sum_probs=258.5
Q ss_pred ChhHHHHHHHHHHHhhccchhhhhhhh-cCChHHHHHHhccCChHHHHHHHHHHHHHhccC-chhhHHHHhhhCChHHHH
Q 000184 1255 GRGARYSAAKALESLFSADHIRNAESA-RQAVQPLVEILNTGLEREQHAAIAALVRLLSEN-PSRALAVADVEMNAVDVL 1332 (1890)
Q Consensus 1255 ~~~~r~~Aa~aL~~L~~~~~~r~~i~~-~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~-~~~~~~~~~v~~g~v~~L 1332 (1890)
+...|....+....++..-.+ ..+.. .+.+.-+-++|++....+|..++.+|..+++.. +-....+ ..++.+|
T Consensus 330 Sw~aRhTgiri~qqI~~llG~-s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~f----d~vl~pL 404 (975)
T COG5181 330 SWEARHTGIRIAQQICELLGR-SRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQF----DEVLCPL 404 (975)
T ss_pred chhhhchhhHHHHHHHHHhCc-cHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHH----HHHHHHH
Confidence 445565555554444432111 11111 223344455666777777888888888888632 2221111 1133333
Q ss_pred HHHHhhcCChhhHHHHHHHHHHh-----hCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccC----Cch-H
Q 000184 1333 CRILSSNCSMELKGDAAELCGVL-----FGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD----DEQ-L 1402 (1890)
Q Consensus 1333 ~~lL~~~~~~~~~~~a~~~l~~L-----~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~----~~~-~ 1402 (1890)
-+-.+.+-. ..-+..|... .-+|+...+.. ......+.+.+.+++++.+....-....+.. ++. .
T Consensus 405 w~g~~~hrg----k~l~sfLkA~g~iiplm~peYa~h~t-re~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~l 479 (975)
T COG5181 405 WEGASQHRG----KELVSFLKAMGFIIPLMSPEYACHDT-REHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKL 479 (975)
T ss_pred HHHHHhcCC----chHHHHHHHhccccccCChHhhhhhH-HHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHH
Confidence 333332211 1111222211 11233222221 2234455566667766665555444444441 111 1
Q ss_pred HHHHHHcCChHHHHHh---hcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHH
Q 000184 1403 AELVAAHGAVIPLVGL---LYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRIL 1479 (1890)
Q Consensus 1403 ~~~~~~~gav~~L~~l---L~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L 1479 (1890)
++.+ ......+...- ......++-..+...|++++.+. . +++.+++.++++++..+...|.+
T Consensus 480 r~~v-~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~-~---------v~~kil~~~~De~ep~r~m~a~~---- 544 (975)
T COG5181 480 RDQV-SPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDP-R---------VSRKILEYYSDEPEPYRKMNAGL---- 544 (975)
T ss_pred HHhh-cHHhhchHHHhhhcccccccceeehhHHHHHHHcCCh-H---------HHHHHHhhccCCcchhhhhhhHH----
Confidence 1111 11112222111 11122233334556677777663 2 66888889998887766655544
Q ss_pred HhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHH
Q 000184 1480 TNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAA 1559 (1890)
Q Consensus 1480 ~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~ 1559 (1890)
+...+..|.+.+++......-.+++.+-.++......+ .-+
T Consensus 545 ---------------vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~--il~---------------------- 585 (975)
T COG5181 545 ---------------VSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGL--ILP---------------------- 585 (975)
T ss_pred ---------------HHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccE--EEe----------------------
Confidence 55667777776655544455667777665443322221 000
Q ss_pred HHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh-----HHHhhcChHHHHHHHhhcCCCC
Q 000184 1560 ELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN-----EIAKEGGVTELSKIILQADPSL 1634 (1890)
Q Consensus 1560 ~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~-----~l~~~g~I~~Ll~~l~~~~~~~ 1634 (1890)
+++......+++..-.....+...+.+|++..|++|++|+...+.++.--.+ .+.+-|.| |-+-+-..+|.+
T Consensus 586 -~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEv 662 (975)
T COG5181 586 -CFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEV 662 (975)
T ss_pred -cccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHH
Confidence 0111111122222222334567778899999999999999988888642111 13333222 222333344544
Q ss_pred cHHHHHHHHHHHHhhhhhchh-hhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHcc
Q 000184 1635 PHALWESAASVLSSILQFSSE-FYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRS 1713 (1890)
Q Consensus 1635 ~~~~~~~a~~~l~~~~~~~~~-~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~ 1713 (1890)
-..+.. |+..+.+..++++- -=..+-+|.|.-.|++....++...+..++.++.+.+.....--=...-=-|+++|.+
T Consensus 663 Lgsil~-Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks 741 (975)
T COG5181 663 LGSILK-AICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS 741 (975)
T ss_pred HHHHHH-HHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH
Confidence 434333 33333333323221 1112357888899999999999999999999998766532100001122346677777
Q ss_pred CCcHHHHHHHHHHHhhchhhhhhhhccccccc---cccccCChHHHHHHHHHHHHHhcchhhhhhhhhhcccccchHHHH
Q 000184 1714 HQCEETAARLLEVLLNNGKIRESKATKSAILP---LSQYLLDPQTQAQQARLLATLALGDLFQNEGLARSADAVSACRAL 1790 (1890)
Q Consensus 1714 ~~~~~~a~~al~~L~~~~~~r~~i~~~~~i~~---L~~~~~~~~~~~~~~~~la~l~~~~~~~~~~l~~~~~~~~~~~~L 1790 (1890)
. .++...+|-.+++.-.+ +|.| |.-++++-.++.++-++-..++++-.+ | .+ +--+.++.|
T Consensus 742 ~-nKeiRR~A~~tfG~Is~---------aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVa--e-~c---gpfsVlP~l 805 (975)
T COG5181 742 W-NKEIRRNATETFGCISR---------AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVA--E-YC---GPFSVLPTL 805 (975)
T ss_pred h-hHHHHHhhhhhhhhHHh---------hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhH--h-hc---CchhhHHHH
Confidence 5 45555555555543111 2222 222334444555555554555555322 2 22 122345555
Q ss_pred HHhhccCCCHHHHHHHHHHHHHhhcCCch-hHHHHHhcCcHHHHHHHhCCCCCCchHHHHHHHHHHhccc
Q 000184 1791 VNVLEEQPTEEMKVVAICALQNLVMYSRS-NKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNH 1859 (1890)
Q Consensus 1791 v~lL~~~~~~~~r~~A~~aL~~l~~~~~~-~~~~~~~~g~v~~L~~ll~~~~~~~~~~a~~~l~~l~~~~ 1859 (1890)
++=-+. |+..|+...++|++-+..+-.. ++.++ -...+.|-+.+-..++--+.+|+.+++.|.-|.
T Consensus 806 m~dY~T-Pe~nVQnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 806 MSDYET-PEANVQNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HhcccC-chhHHHHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 554455 4788888889998777622111 11111 123444555555666667777888888888774
No 88
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=0.028 Score=71.43 Aligned_cols=392 Identities=17% Similarity=0.095 Sum_probs=254.0
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHH
Q 000184 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1890)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 490 (1890)
+..+.++..+...|-+.++.+-.-+.|-+..++... -+++..+++=.+++++.+|..|.+.++.+.- +.....
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v--~~i~ey 121 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRV--DKITEY 121 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEee--hHHHHH
Confidence 345667778888888888877777888777766522 2567788887888999999988888887752 222222
Q ss_pred HHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000184 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 570 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~ 570 (1890)
...+|...++++++-+|..++....++-.. ..+.+.+.|.++.|-+++.+.+|.+..+|..+|..+.....+
T Consensus 122 -----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 122 -----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred -----HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 678999999999999999999988888764 344556789999999999999999999999999999765431
Q ss_pred --------CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000184 571 --------ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 642 (1890)
Q Consensus 571 --------~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~ 642 (1890)
..+..++..+....+ ..-+..|..++.-.+.++ + .....+..+...|.+.+..+.-.+...+.+
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~d~--~---ea~~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPKDS--R---EAEDICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCCCc--h---hHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence 122223333332222 222333444443222221 0 011236667777888888888888888888
Q ss_pred HhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHh---CCCCHHHHH
Q 000184 643 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA---GSPVLEVAE 719 (1890)
Q Consensus 643 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll---~~~~~ev~~ 719 (1890)
+....+. .........-++|+.++.+.. +++.-+++-+.-+....+...+. -+..+ +....-++.
T Consensus 266 ~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~----------~~~~Ff~kynDPiYvK~ 333 (734)
T KOG1061|consen 266 LVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKV----------EIKVFFCKYNDPIYVKL 333 (734)
T ss_pred HHHHHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHh----------HhHeeeeecCCchhhHH
Confidence 8876555 333556678899999998877 67776766665554443322111 11111 122233566
Q ss_pred HHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhcc
Q 000184 720 QATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA 799 (1890)
Q Consensus 720 ~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~ 799 (1890)
.-...+..++.+....+ ++.-|..+...-+.+.-+++.+|+.++...-. + ..+++.-+++++...
T Consensus 334 eKleil~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e--~-------~~~cv~~lLell~~~ 398 (734)
T KOG1061|consen 334 EKLEILIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAE--Q-------SNDCVSILLELLETK 398 (734)
T ss_pred HHHHHHHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh--h-------hhhhHHHHHHHHhhc
Confidence 65666665554332221 33333333333444567789999999874322 1 148899999999987
Q ss_pred CcccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHH
Q 000184 800 SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRL 864 (1890)
Q Consensus 800 ~~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l 864 (1890)
.+.++ .++.-.+..++|..++ .+-.+-...+..++ .-.+|..+..-++++.++
T Consensus 399 ~~yvv-qE~~vvi~dilRkyP~-----~~~~vv~~l~~~~~------sl~epeak~amiWilg~y 451 (734)
T KOG1061|consen 399 VDYVV-QEAIVVIRDILRKYPN-----KYESVVAILCENLD------SLQEPEAKAALIWILGEY 451 (734)
T ss_pred cccee-eehhHHHHhhhhcCCC-----chhhhhhhhccccc------ccCChHHHHHHHHHHhhh
Confidence 77777 8888888888877654 11122233333444 335788888888899888
No 89
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.0028 Score=71.05 Aligned_cols=394 Identities=14% Similarity=0.123 Sum_probs=247.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChh-hH---
Q 000184 1287 PLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR-IR--- 1362 (1890)
Q Consensus 1287 ~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~-~~--- 1362 (1890)
++-.+++.+..+...-....|.+|-........+ ....+.|-.-|.. ++..++..+...++.+..+.+ +.
T Consensus 47 difgfeNenhrekttlcVscLERLfkakegahla-----pnlmpdLQrGLia-ddasVKiLackqigcilEdcDtnaVse 120 (524)
T KOG4413|consen 47 DIFGFENENHREKTTLCVSCLERLFKAKEGAHLA-----PNLMPDLQRGLIA-DDASVKILACKQIGCILEDCDTNAVSE 120 (524)
T ss_pred CCcccccccccchhhhHHHHHHHHHhhccchhhc-----hhhhHHHHhcccC-CcchhhhhhHhhhhHHHhcCchhhHHH
Confidence 3444444333333333777777777533222211 1222333333333 456788777755544443332 21
Q ss_pred -HHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHH--HHhhcCCcHhHHHHHHHHHHHhcc
Q 000184 1363 -STVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPL--VGLLYGRNYMLHEAISRALVKLGK 1439 (1890)
Q Consensus 1363 -~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L--~~lL~~~~~~vr~~A~~aL~~l~~ 1439 (1890)
......+.++.++..+...+.++...|.+.+..++--+...+.++.....+++ ..+-...|.-+|-....-+.++.+
T Consensus 121 illvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifS 200 (524)
T KOG4413|consen 121 ILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFS 200 (524)
T ss_pred HHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHh
Confidence 22346778888888888889999999999999999666666666666666554 344456777788888888899998
Q ss_pred CChhhHHHHHHcCcHHHHHHHhccCChh-HHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHH
Q 000184 1440 DRPSCKLEMVKAGVIESVLDILHEAPDF-LCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQV 1518 (1890)
Q Consensus 1440 ~~~~~~~~l~~~~~i~~L~~lL~~~~~~-v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~a 1518 (1890)
-+|...+...+.|.++.|..-|.-.+|. |+...-++...|+.....+......+.++.+.+.+...+.+|-.+-.++..
T Consensus 201 iSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmg 280 (524)
T KOG4413|consen 201 ISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMG 280 (524)
T ss_pred cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHH
Confidence 8899999999999999999988875554 555677888888888877888888899999999998888888777767776
Q ss_pred HHHhhcCCCccccc--cc--ccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCc--HHHHHHHhcC-C
Q 000184 1519 LVNILEHPQCRADY--SL--TSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQV--IGPLIRVLGS-G 1591 (1890)
Q Consensus 1519 L~nl~~~~~~~~~~--~~--~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~--i~~Lv~lL~s-~ 1591 (1890)
.+.+.......... .+ .-.-.|+.-+...+..||+.++.|..+++.++...+..+.+.+.|- -..|+.-..+ .
T Consensus 281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn 360 (524)
T KOG4413|consen 281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN 360 (524)
T ss_pred HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc
Confidence 66664332111100 00 1112345556667789999999999999999987666665555443 2333333323 3
Q ss_pred CHHHHHHHHHHHHHHhc---cChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHh
Q 000184 1592 IHILQQRAVKALVSIAL---TWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRL 1668 (1890)
Q Consensus 1592 ~~~v~~~A~~aL~~l~~---~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~l 1668 (1890)
..--++.+++||.+++. -+++++.+......+-..+.+ ..++..+ -.+...+...
T Consensus 361 ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifd------------------aaaqstk----ldPleLFlgi 418 (524)
T KOG4413|consen 361 AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFD------------------AAAQSTK----LDPLELFLGI 418 (524)
T ss_pred ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHH------------------HHhhccC----CChHHHHHHH
Confidence 33457788888888863 333344432111122111111 1110100 1256666677
Q ss_pred hccCChhHHHHHHHHHHHhhcCChhhHHHHH-HcccHHHHHH
Q 000184 1669 LRSGSEGTVIGSLNALLVLESDDGTSAEAMA-ESGAIEALLE 1709 (1890)
Q Consensus 1669 l~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~-~~g~i~~Li~ 1709 (1890)
++...+++|-++...+-.+. ..|..-..|. +.|.|+...+
T Consensus 419 lqQpfpEihcAalktfTAia-aqPWalkeifakeefieiVtD 459 (524)
T KOG4413|consen 419 LQQPFPEIHCAALKTFTAIA-AQPWALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HcCCChhhHHHHHHHHHHHH-cCcHHHHHHhcCccceeeecc
Confidence 77778899999988888877 4555554444 4555554443
No 90
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.016 Score=69.84 Aligned_cols=481 Identities=14% Similarity=0.088 Sum_probs=259.7
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHH
Q 000184 1286 QPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTV 1365 (1890)
Q Consensus 1286 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~ 1365 (1890)
=.+.+++++.+..-|...-.++-.|+.-.+ ..+| +...+++=+..+.++.++-.|.+.|.-.
T Consensus 68 f~i~KlFQhkd~~Lrq~VY~aIkelS~~te--dvlm------~tssiMkD~~~g~~~~~kp~AiRsL~~V---------- 129 (898)
T COG5240 68 FAILKLFQHKDLYLRQCVYSAIKELSKLTE--DVLM------GTSSIMKDLNGGVPDDVKPMAIRSLFSV---------- 129 (898)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcch--hhhH------HHHHHHHhhccCCccccccHHHHHHHHh----------
Confidence 346677777777777775555555554110 1111 2233444444443344555555444322
Q ss_pred HhhCchHHHHHHHc----cCChHHHHHHHHHHHhcc-CCchHHHHHH-H-cCChHHHHHh---------hcCCcHhHHHH
Q 000184 1366 AAARCVEPLVSLLV----TEFSPAQHSVVRALDKLV-DDEQLAELVA-A-HGAVIPLVGL---------LYGRNYMLHEA 1429 (1890)
Q Consensus 1366 ~~~~~i~~Lv~lL~----~~~~~~~~~a~~aL~~L~-~~~~~~~~~~-~-~gav~~L~~l---------L~~~~~~vr~~ 1429 (1890)
.+...+...-++|. +.++..+..|+..-+.|. .......... + ..++-.|-+. --++++--+-.
T Consensus 130 id~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYH 209 (898)
T COG5240 130 IDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYH 209 (898)
T ss_pred cCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHH
Confidence 12222222222222 445556666655555555 2222211111 0 1222222211 11345667778
Q ss_pred HHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHH--HHHHhcccccCCccccCChHHHHHHhhccCC
Q 000184 1430 ISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELL--RILTNNAGIAKGPSAAKVVEPLFLLLTRSEF 1507 (1890)
Q Consensus 1430 A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l--~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~ 1507 (1890)
|++-|.++-.+. .- +.-.|++.+.... .+...-|..+ +.....-... ...-....+-|-.++++ .
T Consensus 210 alGlLyq~kr~d-km--------a~lklv~hf~~n~-smknq~a~V~lvr~~~~ll~~n-~q~~~q~rpfL~~wls~--k 276 (898)
T COG5240 210 ALGLLYQSKRTD-KM--------AQLKLVEHFRGNA-SMKNQLAGVLLVRATVELLKEN-SQALLQLRPFLNSWLSD--K 276 (898)
T ss_pred HHHHHHHHhccc-HH--------HHHHHHHHhhccc-ccccchhheehHHHHHHHHHhC-hHHHHHHHHHHHHHhcC--c
Confidence 888888777653 11 2334555554332 2222111111 1111100000 00011123334444554 3
Q ss_pred ChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc-cccccchhccCcHHHHHH
Q 000184 1508 GPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE-EQLQKDPVTQQVIGPLIR 1586 (1890)
Q Consensus 1508 ~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~-~~~~~~l~~~~~i~~Lv~ 1586 (1890)
+..|+..++++++.+....-... .-...|..|-.+|++.....|-.|.++|..+++. ++. +..+ =..+-.
T Consensus 277 ~emV~lE~Ar~v~~~~~~nv~~~----~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v~vc--N~evEs 347 (898)
T COG5240 277 FEMVFLEAARAVCALSEENVGSQ----FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---VSVC--NKEVES 347 (898)
T ss_pred chhhhHHHHHHHHHHHHhccCHH----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---eeec--ChhHHH
Confidence 47788889999988765431111 1234678888899999999999999999999972 211 1111 134445
Q ss_pred HhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHh----hcCCCCcHHHHHHHHHHHHhhhhhchhhhcccch
Q 000184 1587 VLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIIL----QADPSLPHALWESAASVLSSILQFSSEFYLEVPV 1662 (1890)
Q Consensus 1587 lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~----~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v 1662 (1890)
+..+.+..+-..|+..|.+-+.+. .|+.|++++. +-++..+.-+.+ |+.-|+......... -+
T Consensus 348 LIsd~Nr~IstyAITtLLKTGt~e--------~idrLv~~I~sfvhD~SD~FKiI~id-a~rsLsl~Fp~k~~s----~l 414 (898)
T COG5240 348 LISDENRTISTYAITTLLKTGTEE--------TIDRLVNLIPSFVHDMSDGFKIIAID-ALRSLSLLFPSKKLS----YL 414 (898)
T ss_pred HhhcccccchHHHHHHHHHcCchh--------hHHHHHHHHHHHHHhhccCceEEeHH-HHHHHHhhCcHHHHH----HH
Confidence 667888888888888888888754 3555665544 445667777777 666666654211111 23
Q ss_pred HHHHHh-hccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHccCCcHHHHHHHHHHHhhchhhhhhhhccc
Q 000184 1663 AVLVRL-LRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNGKIRESKATKS 1741 (1890)
Q Consensus 1663 ~~Lv~l-l~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~~~a~~al~~L~~~~~~r~~i~~~~ 1741 (1890)
.-|... ++.+..+.+.++..++.-+.+.+|..++ .+++-|+.++++..-.+.+++-|.-|+.+..--. -=++.
T Consensus 415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~-~P~~y 488 (898)
T COG5240 415 DFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQITVRILGILGREGPRAK-TPGKY 488 (898)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCC-CcchH
Confidence 344443 3567789999999999999999988876 5778899999996678899999999987422000 00000
Q ss_pred cccccccc-cCChHHHHHHHHHHHH----HhcchhhhhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHHHHHHhhcC
Q 000184 1742 AILPLSQY-LLDPQTQAQQARLLAT----LALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMY 1816 (1890)
Q Consensus 1742 ~i~~L~~~-~~~~~~~~~~~~~la~----l~~~~~~~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~ 1816 (1890)
...-..+. +.+.+ ++++++.|+ +...+....+ +....|-.+|+++ +.++|..|..+|.++-..
T Consensus 489 vrhIyNR~iLEN~i--vRsaAv~aLskf~ln~~d~~~~~---------sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~~ 556 (898)
T COG5240 489 VRHIYNRLILENNI--VRSAAVQALSKFALNISDVVSPQ---------SVENALKRCLNDQ-DDEVRDRASFLLRNMRLS 556 (898)
T ss_pred HHHHHHHHHHhhhH--HHHHHHHHHHHhccCccccccHH---------HHHHHHHHHhhcc-cHHHHHHHHHHHHhhhhh
Confidence 00001111 12333 334444444 4444444333 3455677799997 999999999999998622
Q ss_pred CchhH-HHHHhcCcHHHHHHHh
Q 000184 1817 SRSNK-RAVAEAGGVQVVLDLI 1837 (1890)
Q Consensus 1817 ~~~~~-~~~~~~g~v~~L~~ll 1837 (1890)
|.--. ....+-|-++.|..=+
T Consensus 557 da~~pl~~sd~~~dipsle~~l 578 (898)
T COG5240 557 DACEPLFSSDELGDIPSLELEL 578 (898)
T ss_pred hhhhccccccccCCcchhHHhh
Confidence 22211 1223556666654433
No 91
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.87 E-value=0.023 Score=69.11 Aligned_cols=332 Identities=13% Similarity=0.084 Sum_probs=194.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--hhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHH
Q 000184 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEG--SLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 489 (1890)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 489 (1890)
.+..++.+|+++.+++|..|+.....|..--. ...+.+.+.|. .|.+-|....+++.-....+++.+.+...-..-
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 45667788899999999999887776653211 11122333333 366777788888887777777766542211100
Q ss_pred HHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHH---HHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000184 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 566 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~---r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 566 (1890)
.---.|.+|.|.-.|.+...+++++....++.+|..+++. |.-+ .+---|++.|++.+.+.++.|..+++.+++
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 0012578999999999999999999999999999876652 1111 122457888999999999999999999877
Q ss_pred CCCC-CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 000184 567 KSDT-ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 645 (1890)
Q Consensus 567 ~~~~-~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~ 645 (1890)
.-.| ..+..|++-|+..+-..+....-+++.++... .-...+|.|..=-..+...+|.-...+++.++.
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~c----------gpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFe 829 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYC----------GPFSVLPTLMSDYETPEANVQNGVLKAMCFMFE 829 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhc----------CchhhHHHHHhcccCchhHHHHhHHHHHHHHHH
Confidence 5443 22233333333333333333333333222111 112235555555556777788888888888775
Q ss_pred cChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHh----CCCCHHHHHHH
Q 000184 646 TRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA----GSPVLEVAEQA 721 (1890)
Q Consensus 646 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll----~~~~~ev~~~a 721 (1890)
.-.+.. .=.-..+.|.|-..+.+.++..+..++..+..|+-..+.... .++.=.|+.++ -.+.+.++..-
T Consensus 830 yig~~s-~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~-----eda~IHLlNllwpNIle~sPhvi~~~ 903 (975)
T COG5181 830 YIGQAS-LDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD-----EDAAIHLLNLLWPNILEPSPHVIQSF 903 (975)
T ss_pred HHHHHH-HHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc-----HHHHHHHHHHhhhhccCCCcHHHHHH
Confidence 421111 011223567777888999999999999999999876543221 11222333333 34555555332
Q ss_pred HHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcC---CcchHHHHHHHHHHHhhcCc
Q 000184 722 TCALANLILDSEVSEKAIAEEIILPATRVLCEG---TISGKTLAAAAIARLLHSRK 774 (1890)
Q Consensus 722 a~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~---~~~~~~~aa~aL~~L~~~~~ 774 (1890)
-..+..+. ..-...+..+++..+ +...-+++-|...+......
T Consensus 904 ~Eg~e~~~----------~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~ 949 (975)
T COG5181 904 DEGMESFA----------TVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFD 949 (975)
T ss_pred HHHHHHHH----------HHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhcc
Confidence 22222221 112223334444432 23344567788888775444
No 92
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00032 Score=85.50 Aligned_cols=290 Identities=16% Similarity=0.125 Sum_probs=180.3
Q ss_pred HHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhh-----HHHH
Q 000184 1374 LVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSC-----KLEM 1448 (1890)
Q Consensus 1374 Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~-----~~~l 1448 (1890)
|+.+..+.+..+|.+|+++|..|..--.. . .-.....++.+.+.+..||.+|+..++-.+.-.|.. -..=
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL-~----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKL-S----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccc-c----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 67777888999999999999888631111 1 113678889999999999999988887665543210 0011
Q ss_pred HHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhH----HHHHHHHHHhh-
Q 000184 1449 VKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQ----HSALQVLVNIL- 1523 (1890)
Q Consensus 1449 ~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~----~~al~aL~nl~- 1523 (1890)
..-.++.++.+.++|-+-.++..+|++++...+.++.. +-+.|+..-.+.+-| +..-+.++.=.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~-----------i~QTLdKKlms~lRRkr~ahkrpk~l~s~Ge 346 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI-----------IQQTLDKKLMSRLRRKRTAHKRPKALYSSGE 346 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH-----------HHHHHHHHHhhhhhhhhhcccchHHHHhcCC
Confidence 23347888899999999889999999998876655422 112222110000011 11122222111
Q ss_pred --------cC-C---CcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc-cccccchhccCcHHHHHHHhcC
Q 000184 1524 --------EH-P---QCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE-EQLQKDPVTQQVIGPLIRVLGS 1590 (1890)
Q Consensus 1524 --------~~-~---~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~-~~~~~~l~~~~~i~~Lv~lL~s 1590 (1890)
.| | .+.....+...|+-..+|.-|+++.-+||.+|+..+..|+.+ +.+. ..+++.|+..+++
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfND 421 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFND 421 (823)
T ss_pred cccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhcc
Confidence 11 1 111223457888999999999999999999999999999873 3332 3568999999999
Q ss_pred CCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhc
Q 000184 1591 GIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLR 1670 (1890)
Q Consensus 1591 ~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~ 1670 (1890)
+..+||..|+.+|..|++.- -.++--++.+++.|.+.++.+|.++.+ .|++. +++.....+..+..|++-|.
T Consensus 422 E~~~VRL~ai~aL~~Is~~l---~i~eeql~~il~~L~D~s~dvRe~l~e----lL~~~-~~~d~~~i~m~v~~lL~~L~ 493 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVHL---AIREEQLRQILESLEDRSVDVREALRE----LLKNA-RVSDLECIDMCVAHLLKNLG 493 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHh---eecHHHHHHHHHHHHhcCHHHHHHHHH----HHHhc-CCCcHHHHHHHHHHHHHHhh
Confidence 99999999999999998752 112323577778888777655544444 33332 24433223334444444432
Q ss_pred cCChhHHHHHHHHHHHhhcCChh
Q 000184 1671 SGSEGTVIGSLNALLVLESDDGT 1693 (1890)
Q Consensus 1671 ~~~~~v~~~a~~aL~~L~~~~~~ 1693 (1890)
.- +-=+.....++..++++.+.
T Consensus 494 ky-PqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 494 KY-PQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred hC-CCCcHHHHHHHHHHhccChh
Confidence 10 11122344456666655443
No 93
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.11 Score=62.97 Aligned_cols=282 Identities=15% Similarity=0.097 Sum_probs=160.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHh
Q 000184 456 QLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES 535 (1890)
Q Consensus 456 ~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~ 535 (1890)
|.|-..+++.-+.++.+++.+.+.++..+ ....+++ ..+..|-.+|.+.....|-.|.++|..|+...|+-- .
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv---~- 339 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV---S- 339 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee---e-
Confidence 45555666666777777777777766322 1111111 256667777777777788888888888876433210 0
Q ss_pred CCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHH----HHhcCCcchHHHHHHHHHHHhhhcCchHHHHHh
Q 000184 536 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTA----LLTSDLPESKVYVLDALKSMLSVVSFSDILREG 611 (1890)
Q Consensus 536 ~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~----lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 611 (1890)
-+-+-+-.|..+.+...- ..++..|......+.+..|+. .+++..++-|..+++++..|+...+.... .
T Consensus 340 -vcN~evEsLIsd~Nr~Is---tyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~---s 412 (898)
T COG5240 340 -VCNKEVESLISDENRTIS---TYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL---S 412 (898)
T ss_pred -ecChhHHHHhhcccccch---HHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH---H
Confidence 011122222222222222 222333333333344444433 35666677777788888888876654321 1
Q ss_pred hhhcchHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcC-CCHHHHHHHHHHHHHHHccC
Q 000184 612 SAANDAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAIFLSV 689 (1890)
Q Consensus 612 ~~~~~~i~~Lv~lL-~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~ 689 (1890)
.+..|...| ..+.-+.++.+..++..+....++.++ .++..|+..+.+ .-+.+... .|+-|....
T Consensus 413 -----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~vr---IL~iLG~Eg 479 (898)
T COG5240 413 -----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQITVR---ILGILGREG 479 (898)
T ss_pred -----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHHHH---HHHHhcccC
Confidence 255566644 567788899999999988887766554 456677777743 33444444 444443333
Q ss_pred chhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000184 690 RENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 769 (1890)
Q Consensus 690 ~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L 769 (1890)
|..... ...+..+..=+--.+.-||..|..||.....+.+... ....+...|.+++.+.++++|..|+.+|.++
T Consensus 480 P~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~--~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 480 PRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV--SPQSVENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred CCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc--cHHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 321111 1233444432223455688999999987764332211 1234566788999999999999999988877
Q ss_pred h
Q 000184 770 L 770 (1890)
Q Consensus 770 ~ 770 (1890)
-
T Consensus 554 ~ 554 (898)
T COG5240 554 R 554 (898)
T ss_pred h
Confidence 4
No 94
>PF05536 Neurochondrin: Neurochondrin
Probab=97.73 E-value=0.02 Score=73.90 Aligned_cols=402 Identities=15% Similarity=0.132 Sum_probs=232.1
Q ss_pred CChHHHHHHhccCChHHHHHHHHHHHHHhccCchh----hHHHHhhhCChHHHHHHHHhhc------CChhhHHHHHHHH
Q 000184 1283 QAVQPLVEILNTGLEREQHAAIAALVRLLSENPSR----ALAVADVEMNAVDVLCRILSSN------CSMELKGDAAELC 1352 (1890)
Q Consensus 1283 ~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~----~~~~~~v~~g~v~~L~~lL~~~------~~~~~~~~a~~~l 1352 (1890)
..++.-+.+|+..+++.|-+++..+.++..+++.. ..+. ++=....|-++|... +....+..+..+|
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~---~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVF---EAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHH---HhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 34777889999999888999999999998855422 2232 333457788888763 2245678888999
Q ss_pred HHhhCChhhHHHHHhhCchHHHHHHHccCCh-HHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHH
Q 000184 1353 GVLFGNTRIRSTVAAARCVEPLVSLLVTEFS-PAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAIS 1431 (1890)
Q Consensus 1353 ~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~ 1431 (1890)
...+.+++......-.+.+|.|+..+.+.+. .+...+...|..++..++.+..+.+.|+++.|++.+.+ .+...+.|.
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 9999999988777778899999999988887 99999999999999888888889899999999999987 566788999
Q ss_pred HHHHHhccCChhhHHHHHHc----CcHHHHHHHhccCChhHHHHHHHHHHHHHhcccc--cCCccccCChHHHHH----H
Q 000184 1432 RALVKLGKDRPSCKLEMVKA----GVIESVLDILHEAPDFLCSAFAELLRILTNNAGI--AKGPSAAKVVEPLFL----L 1501 (1890)
Q Consensus 1432 ~aL~~l~~~~~~~~~~l~~~----~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~--~~~~~~~~~v~~Li~----l 1501 (1890)
..|.++.... .....-... .+++.+-+......+..+......+..+-..... .......+....+.. +
T Consensus 161 ~lL~~Lls~~-~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 161 NLLLNLLSRL-GQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHhc-chhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 8888877653 211111111 2344444444444333333344444433232211 122223344444433 3
Q ss_pred hhccCCChhhHHHHHHHHHHhhcCCCccccccc---ccCCchhhhhhccCCCCHHHHHHHHHHHHHhhc---ccccc---
Q 000184 1502 LTRSEFGPDGQHSALQVLVNILEHPQCRADYSL---TSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL---EEQLQ--- 1572 (1890)
Q Consensus 1502 L~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~---~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~---~~~~~--- 1572 (1890)
|. ...++..|..++.....+++.....-.+.- ......-.++++.. ....-.|..+.. .+.+.
T Consensus 240 L~-sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~-------VEir~~L~~L~~~~~~~~~~~~~ 311 (543)
T PF05536_consen 240 LQ-SRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLAC-------VEIRMSLEELLEQLNPEEYPEKQ 311 (543)
T ss_pred Hh-cCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHH-------HHHHHHhHHhhhcCCchhhHHHH
Confidence 33 345577777777777777554322211100 11122223332211 111111111111 01110
Q ss_pred cchh-ccCcHHHHHHHh----cCC----CHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhc-CCCCcHH-HHHH
Q 000184 1573 KDPV-TQQVIGPLIRVL----GSG----IHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA-DPSLPHA-LWES 1641 (1890)
Q Consensus 1573 ~~l~-~~~~i~~Lv~lL----~s~----~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~-~~~~~~~-~~~~ 1641 (1890)
..+. ....++..+.++ +.+ +++...+..++|.. .+...++.|++. |+..+.. +.-.
T Consensus 312 ~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e-------------~~~~vle~L~~~~d~~~~d~~~vlA 378 (543)
T PF05536_consen 312 RLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSE-------------TFSAVLEYLRDVWDESQKDPDFVLA 378 (543)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhccccchHHHHH
Confidence 0000 012233333333 211 22333333333221 234445555542 2122222 4444
Q ss_pred HHHHHHhhhhhchhhhccc---chHHHHHhhccCCh----------hHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHH
Q 000184 1642 AASVLSSILQFSSEFYLEV---PVAVLVRLLRSGSE----------GTVIGSLNALLVLESDDGTSAEAMAESGAIEALL 1708 (1890)
Q Consensus 1642 a~~~l~~~~~~~~~~~~~~---~v~~Lv~ll~~~~~----------~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li 1708 (1890)
++.+++.+.+-+...+.++ -+|.++++.+.... +.+..-.-+|++++ ..+.-|..+...||.+.|.
T Consensus 379 svR~L~~WLaEe~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt-~e~~gr~~l~~~~g~~~l~ 457 (543)
T PF05536_consen 379 SVRVLGAWLAEETSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLT-AEEEGRKILLSNGGWKLLC 457 (543)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhh-ccHHHHHHHHhCCcHHHHH
Confidence 7778888775444445443 57888888764422 35777777888887 4567778888889877666
Q ss_pred HHH
Q 000184 1709 ELL 1711 (1890)
Q Consensus 1709 ~lL 1711 (1890)
+.+
T Consensus 458 ~~l 460 (543)
T PF05536_consen 458 DDL 460 (543)
T ss_pred HHH
Confidence 554
No 95
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.72 E-value=0.00026 Score=69.35 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=109.4
Q ss_pred ChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchh
Q 000184 366 DPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSL 445 (1890)
Q Consensus 366 ~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 445 (1890)
+..+.+.-|+.-+...++...|++...-|++.+-+|.+-..+.+.+++...+..+...+....+.+...|.|+|.+ +.+
T Consensus 13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n 91 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTN 91 (173)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHH
Confidence 3444555666666666676679999999999999999999999999999999999999999999999999999998 567
Q ss_pred hHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHh
Q 000184 446 WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 493 (1890)
Q Consensus 446 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~ 493 (1890)
.+.|.+++|+|..+..+.++...+...|+.+|..|+-+....+..+..
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 889999999999999999999999999999999999655555666643
No 96
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0032 Score=79.51 Aligned_cols=362 Identities=18% Similarity=0.117 Sum_probs=204.8
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHH
Q 000184 1284 AVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRS 1363 (1890)
Q Consensus 1284 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~ 1363 (1890)
++..+++=..+.+...|.-|++.++.+..++ +-.-...+|.+.+.+. +..++..++-.+..++.... .
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~v~~---------i~ey~~~Pl~~~l~d~-~~yvRktaa~~vakl~~~~~--~ 154 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLRVDK---------ITEYLCDPLLKCLKDD-DPYVRKTAAVCVAKLFDIDP--D 154 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEeehH---------HHHHHHHHHHHhccCC-ChhHHHHHHHHHHHhhcCCh--h
Confidence 4455555555566666777777666665422 1123567777777765 45666666666666654432 2
Q ss_pred HHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCCh
Q 000184 1364 TVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP 1442 (1890)
Q Consensus 1364 ~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~ 1442 (1890)
...+.|.++.|..++.+.++.+...|+.+|..+. .+++.-........+..+++.++..+..-|-....+|.+-.....
T Consensus 155 ~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 155 LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence 3345677788888888888888888888888887 222111111123345666666666666666666666666555432
Q ss_pred hhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHh
Q 000184 1443 SCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNI 1522 (1890)
Q Consensus 1443 ~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl 1522 (1890)
.... ..++.+...|.+.+..+.-.+...+..+.............+.-+||+.+++++ +..+.-+++=+.-+
T Consensus 235 ~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~---~e~qyvaLrNi~li 306 (734)
T KOG1061|consen 235 REAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSE---SEIQYVALRNINLI 306 (734)
T ss_pred hhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeeccc---chhhHHHHhhHHHH
Confidence 1111 134455555555554444444445544444333322223445667777777742 45555455544444
Q ss_pred hcCCCcccccccccCCchhhhhhcc--C-CCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHH
Q 000184 1523 LEHPQCRADYSLTSHQAIEPLIPLL--D-SPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRA 1599 (1890)
Q Consensus 1523 ~~~~~~~~~~~~~~~~~i~~Lv~lL--~-s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A 1599 (1890)
.+.... ....-+..+ + .+--.++..-+.++..++.+....+ .+.-|...-..-+.+.-..|
T Consensus 307 l~~~p~----------~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~q------vl~El~eYatevD~~fvrka 370 (734)
T KOG1061|consen 307 LQKRPE----------ILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQ------VLAELKEYATEVDVDFVRKA 370 (734)
T ss_pred HHhChH----------HHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHH
Confidence 332111 111111111 1 2223467777778887776544432 44555666667788889999
Q ss_pred HHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhcc-CChhHHH
Q 000184 1600 VKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRS-GSEGTVI 1678 (1890)
Q Consensus 1600 ~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~-~~~~v~~ 1678 (1890)
++|+++++.-.+.. ++.|+.|++++...-+.+ +++ ++.+++.+.+.-...+ +.-++.+..-+.+ ++++.|.
T Consensus 371 Iraig~~aik~e~~---~~cv~~lLell~~~~~yv---vqE-~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~ 442 (734)
T KOG1061|consen 371 VRAIGRLAIKAEQS---NDCVSILLELLETKVDYV---VQE-AIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKA 442 (734)
T ss_pred HHHhhhhhhhhhhh---hhhHHHHHHHHhhcccce---eee-hhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHH
Confidence 99999998654433 678999999998643323 233 5556666654322211 2234555544444 4667777
Q ss_pred HHHHHHHHhhc
Q 000184 1679 GSLNALLVLES 1689 (1890)
Q Consensus 1679 ~a~~aL~~L~~ 1689 (1890)
+-++.++.-+.
T Consensus 443 amiWilg~y~~ 453 (734)
T KOG1061|consen 443 ALIWILGEYAE 453 (734)
T ss_pred HHHHHHhhhhh
Confidence 77776666554
No 97
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.051 Score=67.52 Aligned_cols=384 Identities=18% Similarity=0.141 Sum_probs=225.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHH
Q 000184 1286 QPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTV 1365 (1890)
Q Consensus 1286 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~ 1365 (1890)
-.-|.+|.++-..+|.-.-..+.-|-..+ .. +| .-++..+.+=|.+. ++.-.-.|...++++.+ .+.+..+
T Consensus 77 mEaV~LLss~kysEKqIGYl~is~L~n~n--~d-l~----klvin~iknDL~sr-n~~fv~LAL~~I~niG~-re~~ea~ 147 (938)
T KOG1077|consen 77 MEAVNLLSSNKYSEKQIGYLFISLLLNEN--SD-LM----KLVINSIKNDLSSR-NPTFVCLALHCIANIGS-REMAEAF 147 (938)
T ss_pred HHHHHHhhcCCccHHHHhHHHHHHHHhcc--hH-HH----HHHHHHHHhhhhcC-CcHHHHHHHHHHHhhcc-HhHHHHh
Confidence 34567787776666666555555555433 11 11 12444555545443 44666777888887733 3322222
Q ss_pred HhhCchHHHHHHHccCC--hHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCCh
Q 000184 1366 AAARCVEPLVSLLVTEF--SPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP 1442 (1890)
Q Consensus 1366 ~~~~~i~~Lv~lL~~~~--~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~ 1442 (1890)
. ..+-++|.+++ +-++.+|+-+|..|. ..++... ..+..++++.+|++.+..+-.++..-+-.++..+|
T Consensus 148 ~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 148 A-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred h-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 1 22235666654 567888888888887 4443322 24567899999999998888888888777777765
Q ss_pred hhHHHHHHcCcHHHHHHHhcc-----CCh---------hHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccC--
Q 000184 1443 SCKLEMVKAGVIESVLDILHE-----APD---------FLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE-- 1506 (1890)
Q Consensus 1443 ~~~~~l~~~~~i~~L~~lL~~-----~~~---------~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~-- 1506 (1890)
+.- .++++.-+..|.. +.+ .-.+....+++.|...+............+.|-++|...+
T Consensus 220 ~~y-----k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~ 294 (938)
T KOG1077|consen 220 ESY-----KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEP 294 (938)
T ss_pred HHH-----hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccC
Confidence 533 2344544444431 111 0133456667767666554443333444455555554444
Q ss_pred -CChhhHHH-HHHH----HHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCc
Q 000184 1507 -FGPDGQHS-ALQV----LVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQV 1580 (1890)
Q Consensus 1507 -~~~~v~~~-al~a----L~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~ 1580 (1890)
...++|++ |-.+ ..+++.+.++... .-..++..|-++|.+..+.+|..|++.+..++..+...+.+..+
T Consensus 295 ~~~k~vq~~na~naVLFeaI~l~~h~D~e~~---ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h-- 369 (938)
T KOG1077|consen 295 PKSKKVQHSNAKNAVLFEAISLAIHLDSEPE---LLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH-- 369 (938)
T ss_pred ccccchHhhhhHHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--
Confidence 44566654 2222 2233322222111 12356788899999999999999999999999976666666665
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhh--
Q 000184 1581 IGPLIRVLG-SGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFY-- 1657 (1890)
Q Consensus 1581 i~~Lv~lL~-s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~-- 1657 (1890)
.+.++..|+ ..+..+|++|+.-|..+.+.. |+ .-.|.+|+..+.+.|...|..+.-..+..-...+ .+-.-|
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~-Na---k~IV~elLqYL~tAd~sireeivlKvAILaEKyA-tDy~WyVd 444 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NA---KQIVAELLQYLETADYSIREEIVLKVAILAEKYA-TDYSWYVD 444 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchh-hH---HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc-CCcchhHH
Confidence 788888887 688899999999999886532 32 1236779999999998888887774443332222 111011
Q ss_pred -------------cccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHccc
Q 000184 1658 -------------LEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGA 1703 (1890)
Q Consensus 1658 -------------~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~ 1703 (1890)
.++.-..+++.. -+++++|..|+.-+-..- +-+...+.|++.||
T Consensus 445 viLqLiriagd~vsdeVW~RvvQiV-vNnedlq~yaak~~fe~L-q~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 445 VILQLIRIAGDYVSDEVWYRVVQIV-VNNEDLQGYAAKRLFEYL-QKPACHENMVKVGG 501 (938)
T ss_pred HHHHHHHHhcccccHHHHHHhheeE-ecchhhhHHHHHHHHHHH-hhhHHHHHHHHhhh
Confidence 011111111111 246677776665544332 23445577887765
No 98
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.014 Score=65.84 Aligned_cols=276 Identities=17% Similarity=0.136 Sum_probs=168.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHH
Q 000184 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREI 277 (1890)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i 277 (1890)
...++.++.+.++.++..|..-|..++.+ +...-.-.+...++.+.+++..... -..|+.+|.|++. +.+.++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~---~~~a~~alVnlsq-~~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP---AEPAATALVNLSQ-KEELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc---ccHHHHHHHHHHh-hHHHHHHH
Confidence 34688999999999999999888777755 2111111335567889999887532 6789999999999 67778888
Q ss_pred HhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcc
Q 000184 278 AGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDS 357 (1890)
Q Consensus 278 ~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~ 357 (1890)
.+. -+..++..+..+. ..+-+-.+..|.|++.....+... +..+.
T Consensus 80 l~~-~~k~l~~~~~~p~---------~~lad~~cmlL~NLs~~~~~~~~l------------------------l~~~~- 124 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQ---------SPLADLICMLLSNLSRDDDEVAAL------------------------LTNLT- 124 (353)
T ss_pred HHH-HHHHHHHHhcCcc---------cchHHHHHHHHHHhccCchHHHHH------------------------HHhcc-
Confidence 776 6667777776653 345667788899988743222211 11111
Q ss_pred cccCCCCCChhhhHHHHHhhcCCCCChH-HHHHHHHHHHHhhCCCccchhhhhcCcHH--HHHHHhcCCCHHHH-HHHHH
Q 000184 358 KAESTKPSDPLIVEQTLVNQFKPRLPFL-VQERTIEALASLYGNPLLSIKLENSEAKR--LLVGLITMATNEVQ-EELVR 433 (1890)
Q Consensus 358 ~~~~~~~~~~~~i~~~L~~ll~~~~~~~-~~~~a~~aL~~L~~~~~~~~~l~~~g~i~--~Lv~lL~~~~~~v~-~~a~~ 433 (1890)
. +-+ ++++....+...++-... --...+..++++++.+..|..+.+...++ .++.+ .+.+..+| ...+.
T Consensus 125 --~---~~~-~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~Gvag 197 (353)
T KOG2973|consen 125 --E---KKD-SGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAG 197 (353)
T ss_pred --c---ccc-cchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHH
Confidence 0 000 345555555555443211 13455666777778887777766655222 12222 23344444 56778
Q ss_pred HHHHhhccCchhhHHHHhcCcHHHHHHh------------------------hC-----CCCHHHHHHHHHHHHHcccCC
Q 000184 434 ALLKLCNNEGSLWRALQGREGIQLLISL------------------------LG-----LSSEQQQECSVALLCLLSNEN 484 (1890)
Q Consensus 434 aL~~L~~~~~~~~~~i~~~g~i~~Lv~l------------------------L~-----~~~~~v~~~A~~aL~nL~~~~ 484 (1890)
.|.|.|.+.. ++..+.+ ..+..|..+ |. .+++.++..-+.+|..|+. .
T Consensus 198 tlkN~cFd~~-~h~~lL~-e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T 274 (353)
T KOG2973|consen 198 TLKNCCFDAK-LHEVLLD-ESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-T 274 (353)
T ss_pred HHHhhhccch-hHHHHhc-chHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-h
Confidence 8889887744 4444444 333222222 21 2478899999999999995 6
Q ss_pred hhcHHHHHhcCCcHHHHHhccC-CCHHHHHHHHHHHHHHh
Q 000184 485 DDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNLC 523 (1890)
Q Consensus 485 ~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~e~a~~aL~~L~ 523 (1890)
...|+.+.+.|+-+.+-.+=+. .++++++.|-...--+-
T Consensus 275 ~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 275 RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 7888888887666655554333 36777765544443333
No 99
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.58 E-value=0.00015 Score=69.55 Aligned_cols=85 Identities=29% Similarity=0.397 Sum_probs=70.5
Q ss_pred hHHHHHHH-ccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHH
Q 000184 1371 VEPLVSLL-VTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMV 1449 (1890)
Q Consensus 1371 i~~Lv~lL-~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~ 1449 (1890)
++.|+..| +++++.+|..++.+|+++.. ..+++.|..+++++++.+|+.|+.+|++++...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~-------- 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIGDPE-------- 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH--------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH--------
Confidence 57889988 89999999999999998841 235899999999999999999999999998554
Q ss_pred HcCcHHHHHHHhccCChh-HHHHHHHHH
Q 000184 1450 KAGVIESVLDILHEAPDF-LCSAFAELL 1476 (1890)
Q Consensus 1450 ~~~~i~~L~~lL~~~~~~-v~~~aa~~l 1476 (1890)
+++.|.+++.++++. ++..++.+|
T Consensus 63 ---~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 63 ---AIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ---THHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 889999999887654 566666665
No 100
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.64 Score=60.21 Aligned_cols=322 Identities=18% Similarity=0.203 Sum_probs=214.6
Q ss_pred HHHHHHHHhccCchhhHHHHhhh---CChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHc
Q 000184 1303 AIAALVRLLSENPSRALAVADVE---MNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLV 1379 (1890)
Q Consensus 1303 A~~aL~~L~~~~~~~~~~~~~v~---~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~ 1379 (1890)
++.||.|+...++.-..++. -+ -|-.+.+..++....+..+...+..++..+..+.+....++..+.+..|..+|.
T Consensus 1745 ~LtAL~Nli~~nPdlasvfg-Se~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFG-SEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred HHHHHHHHHhhCcchhhhcc-chhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHh
Confidence 89999999886663322211 01 155566777777666678999999999999999999999999999999999998
Q ss_pred cCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhc-CCcHhHHHHHHHHHHHhccCC---hhhHHHHHH-----
Q 000184 1380 TEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLY-GRNYMLHEAISRALVKLGKDR---PSCKLEMVK----- 1450 (1890)
Q Consensus 1380 ~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~-~~~~~vr~~A~~aL~~l~~~~---~~~~~~l~~----- 1450 (1890)
+ -|..|..+...|+.|+.+.+......+.|++..+..++- +..+.+|-+|..-|+++..+. |.++..+++
T Consensus 1824 S-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~ 1902 (2235)
T KOG1789|consen 1824 S-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEI 1902 (2235)
T ss_pred c-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHH
Confidence 6 478899999999999988888888889999999998886 566788888899999988763 333333222
Q ss_pred ------cCcHHHHHHHhcc--CChhH------H----HHHHHHHHHHHhccc-----ccCCcc------------ccC--
Q 000184 1451 ------AGVIESVLDILHE--APDFL------C----SAFAELLRILTNNAG-----IAKGPS------------AAK-- 1493 (1890)
Q Consensus 1451 ------~~~i~~L~~lL~~--~~~~v------~----~~aa~~l~~L~~~~~-----~~~~~~------------~~~-- 1493 (1890)
.|- +..+.++.. +++++ + ...++....+-.+.. .+..+. +.|
T Consensus 1903 f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~ 1981 (2235)
T KOG1789|consen 1903 FADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGS 1981 (2235)
T ss_pred HHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchh
Confidence 121 444444432 11111 1 112222222211111 111110 001
Q ss_pred ----------------------ChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCC
Q 000184 1494 ----------------------VVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPA 1551 (1890)
Q Consensus 1494 ----------------------~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~ 1551 (1890)
.++.+..+|.++......-.--..+++.+.......+.- +...|-+|.++..+...+
T Consensus 1982 ~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADq-ip~LGylPK~~~Am~~~n 2060 (2235)
T KOG1789|consen 1982 INREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQ-LPSLGYLPKFCTAMCLQN 2060 (2235)
T ss_pred hhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhh-CCCccchHHHHHHHHhcC
Confidence 456666677665411111112334555555443333331 377899999999988777
Q ss_pred HHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhH----HHhhcChHHHHHHH
Q 000184 1552 PAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNE----IAKEGGVTELSKII 1627 (1890)
Q Consensus 1552 ~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~----l~~~g~I~~Ll~~l 1627 (1890)
..+-..|.++|..++.+.-..+.+....++++++..+..... ..--|+.+|.++-.....+ ..+.|.|+-|+++|
T Consensus 2061 ~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LL 2139 (2235)
T KOG1789|consen 2061 TSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPS-LMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLL 2139 (2235)
T ss_pred CcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcch-HHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHh
Confidence 777789999999999988888888888889998888864333 3337788888886644443 56678899999988
Q ss_pred hh
Q 000184 1628 LQ 1629 (1890)
Q Consensus 1628 ~~ 1629 (1890)
..
T Consensus 2140 d~ 2141 (2235)
T KOG1789|consen 2140 DS 2141 (2235)
T ss_pred cc
Confidence 75
No 101
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.53 E-value=0.00013 Score=70.14 Aligned_cols=86 Identities=28% Similarity=0.407 Sum_probs=74.0
Q ss_pred hHHHHHHh-hccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhccccccc
Q 000184 1495 VEPLFLLL-TRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQK 1573 (1890)
Q Consensus 1495 v~~Li~lL-~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~ 1573 (1890)
++.|++.| ++++ +.+|..++.+|+++ .....++.|+.+++++++.+|..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~--~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD--PQVRAEAARALGEL------------GDPEAIPALIELLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSS--HHHHHHHHHHHHCC------------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCC--HHHHHHHHHHHHHc------------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 57889988 7666 99999999999966 66788999999999999999999999999775
Q ss_pred chhccCcHHHHHHHhcC-CCHHHHHHHHHHHH
Q 000184 1574 DPVTQQVIGPLIRVLGS-GIHILQQRAVKALV 1604 (1890)
Q Consensus 1574 ~l~~~~~i~~Lv~lL~s-~~~~v~~~A~~aL~ 1604 (1890)
+..+++.|.+++.+ .+..+|..|+.+|+
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 35689999999976 45677999999885
No 102
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.48 E-value=0.0034 Score=79.65 Aligned_cols=272 Identities=16% Similarity=0.077 Sum_probs=189.4
Q ss_pred HHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHH-HHhcCC
Q 000184 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLN-HLIHKS 568 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~-~L~~~~ 568 (1890)
..+..|.++.+....+..+-. ....++.....-|...++.|+...|+++...+.+..+..+..+|. .+...+
T Consensus 464 k~~~~~~~~~~~svakt~~~~-------~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~ 536 (748)
T KOG4151|consen 464 KRLSLDEDPSCESVAKTVSWA-------KNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG 536 (748)
T ss_pred HhhccCcchhhhHHHHHHHHH-------HHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC
Confidence 344555555555544332211 222222223556777788999999999999999999999999998 333322
Q ss_pred C--CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 000184 569 D--TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1890)
Q Consensus 569 ~--~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~ 646 (1890)
+ ...++++...++.+.... .-.+.|-.+.++++.++..+..+....+++.+-+++...++..|+.+...+.||.++
T Consensus 537 ~~~~~v~~~~~s~~~~d~~~~--en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~ 614 (748)
T KOG4151|consen 537 ERSYEVVKPLDSALHNDEKGL--ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWS 614 (748)
T ss_pred CchhhhhhhhcchhhhhHHHH--HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh
Confidence 2 356666666666554221 123344444444444443333355666788888888999999999999999999998
Q ss_pred ChhHHHHHHH-cCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHH
Q 000184 647 RKDLRESSIA-VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCAL 725 (1890)
Q Consensus 647 ~~~~~~~~~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL 725 (1890)
+.-+...+.. ...++.+...+....+....++++++..|.+-.............+...++.++.+++.++|.......
T Consensus 615 ~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ 694 (748)
T KOG4151|consen 615 PLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVII 694 (748)
T ss_pred HHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhh
Confidence 5544333444 446788888887788888888888888676544333332455678899999999999999999999999
Q ss_pred HHHh-cCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 000184 726 ANLI-LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLL 770 (1890)
Q Consensus 726 ~nL~-~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~ 770 (1890)
.|+. .+.+.+..++.....+.+.++-+-.....++.++.+|....
T Consensus 695 ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~a~ 740 (748)
T KOG4151|consen 695 LNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLSAAE 740 (748)
T ss_pred hhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 9976 67788888888888888888777765667888888877664
No 103
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.48 E-value=0.00015 Score=58.05 Aligned_cols=41 Identities=46% Similarity=0.687 Sum_probs=38.4
Q ss_pred ChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhc
Q 000184 484 NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 524 (1890)
Q Consensus 484 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~ 524 (1890)
++++++.+++.|++|+|+++|.++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 36789999999999999999999999999999999999973
No 104
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0031 Score=77.33 Aligned_cols=289 Identities=14% Similarity=0.087 Sum_probs=183.9
Q ss_pred CChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccccc--C
Q 000184 1410 GAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIA--K 1487 (1890)
Q Consensus 1410 gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~--~ 1487 (1890)
+++..|..+..+.+..||..|+.+|..++..- +--+. +....++.+.|+.+.|+..|..+++..++..-.. .
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34556888999999999999999999988753 22222 6788899999999999999999998887766211 1
Q ss_pred CccccC----ChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhh-hccCCCC---HHHHHHHH
Q 000184 1488 GPSAAK----VVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLI-PLLDSPA---PAVQQLAA 1559 (1890)
Q Consensus 1488 ~~~~~~----~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv-~lL~s~~---~~vq~~A~ 1559 (1890)
...+.+ +...+...+.+.+ -.+|-.|.++|+.+-+-. ...|...+ +-+-+.. ..-.+.+.
T Consensus 272 e~~e~kl~D~aF~~vC~~v~D~s--l~VRV~AaK~lG~~~~vS----------ee~i~QTLdKKlms~lRRkr~ahkrpk 339 (823)
T KOG2259|consen 272 ESEEEKLKDAAFSSVCRAVRDRS--LSVRVEAAKALGEFEQVS----------EEIIQQTLDKKLMSRLRRKRTAHKRPK 339 (823)
T ss_pred hhhhhhhHHHHHHHHHHHHhcCc--eeeeehHHHHhchHHHhH----------HHHHHHHHHHHHhhhhhhhhhcccchH
Confidence 111222 3445555566544 677777888887663211 11111000 0000000 00011111
Q ss_pred HHHHHhhc--cccc------------ccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHH
Q 000184 1560 ELLSHLLL--EEQL------------QKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSK 1625 (1890)
Q Consensus 1560 ~aL~~l~~--~~~~------------~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~ 1625 (1890)
...++-.+ .++| .+-+..+|+.+.++.-|+++-.+||.+|+..++.++.+.|.- ....++-|.+
T Consensus 340 ~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvD 417 (823)
T KOG2259|consen 340 ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVD 417 (823)
T ss_pred HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHH
Confidence 22222211 0111 134566899999999999999999999999999999887663 1223578888
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHH
Q 000184 1626 IILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIE 1705 (1890)
Q Consensus 1626 ~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~ 1705 (1890)
++.++...|| ..|+..|..++.. ..+.++-++.+...|.+.+.++|++.-..|.+.-..| .++..| .+.
T Consensus 418 MfNDE~~~VR----L~ai~aL~~Is~~--l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d-~~~i~m----~v~ 486 (823)
T KOG2259|consen 418 MFNDEIEVVR----LKAIFALTMISVH--LAIREEQLRQILESLEDRSVDVREALRELLKNARVSD-LECIDM----CVA 486 (823)
T ss_pred HhccHHHHHH----HHHHHHHHHHHHH--heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCc-HHHHHH----HHH
Confidence 8988765444 4455555555422 3445567899999999999999999988888765433 333322 344
Q ss_pred HHHHHHcc-CCcHHHHHHHHHHHhh
Q 000184 1706 ALLELLRS-HQCEETAARLLEVLLN 1729 (1890)
Q Consensus 1706 ~Li~lL~~-~~~~~~a~~al~~L~~ 1729 (1890)
.|+..|.- ++++.....++..++.
T Consensus 487 ~lL~~L~kyPqDrd~i~~cm~~iGq 511 (823)
T KOG2259|consen 487 HLLKNLGKYPQDRDEILRCMGRIGQ 511 (823)
T ss_pred HHHHHhhhCCCCcHHHHHHHHHHhc
Confidence 55555544 5677777777777765
No 105
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.35 E-value=0.047 Score=66.88 Aligned_cols=312 Identities=18% Similarity=0.133 Sum_probs=194.7
Q ss_pred CCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCC--CCHHHHHHHHHH
Q 000184 399 GNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL--SSEQQQECSVAL 476 (1890)
Q Consensus 399 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~a 476 (1890)
++|..+..+.-....+.+..++-+++..++..+.+.++.+..+. ...+.+.+.+.--.++.-|.. .+..-+++|...
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkl 91 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKL 91 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHH
Confidence 34444444444444555554444555999999999999988873 445556665554444554543 345567788888
Q ss_pred HHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHH
Q 000184 477 LCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEI 556 (1890)
Q Consensus 477 L~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~ 556 (1890)
.+.+.. ....... ...|.+..++.+.++.++..+..|..+|+.++-.+| +.+...||++.|++.+.++.....+.
T Consensus 92 iR~~l~-~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~ 166 (371)
T PF14664_consen 92 IRAFLE-IKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISES 166 (371)
T ss_pred HHHHHH-hcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHH
Confidence 777763 2222111 245688899999999999999999999999998655 45678999999999998887778888
Q ss_pred HHHHHHHHhcCCCC-------CcHHHHHHHHhcCC-----cc----hHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHH
Q 000184 557 AAKTLNHLIHKSDT-------ATISQLTALLTSDL-----PE----SKVYVLDALKSMLSVVSFSDILREGSAANDAVET 620 (1890)
Q Consensus 557 Aa~aL~~L~~~~~~-------~~i~~L~~lL~~~~-----~~----~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~ 620 (1890)
.+.++.++..++.. -.++.+.....+.+ ++ ....+..++.. .+.+++-++.-+..+..++..
T Consensus 167 l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~--~LrsW~GLl~l~~~~~~~lks 244 (371)
T PF14664_consen 167 LLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAIST--LLRSWPGLLYLSMNDFRGLKS 244 (371)
T ss_pred HHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHH--HHhcCCceeeeecCCchHHHH
Confidence 88899888876652 23444444444331 11 11222333322 234444433333444578999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhcChh-HHHH------HHHcCchHHHHHhhc----------C---CCHHHHHHHHH
Q 000184 621 MIKILSSTKEETQAKSASALAGIFETRKD-LRES------SIAVKTLWSVMKLLD----------V---GSECILVEASR 680 (1890)
Q Consensus 621 Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~-~~~~------~~~~g~i~~Lv~lL~----------~---~~~~v~~~a~~ 680 (1890)
|+..|..+++++|..-...+..+.+-... ..+. ....|-..--.++.. + ...+....=..
T Consensus 245 Lv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~a 324 (371)
T PF14664_consen 245 LVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLA 324 (371)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHH
Confidence 99999999999999999999988865321 1111 111111100001110 0 00011111111
Q ss_pred HHHHHHccCchhhHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHh
Q 000184 681 CLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLI 729 (1890)
Q Consensus 681 aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~-~~ev~~~aa~aL~nL~ 729 (1890)
.+ -..+.++|.++.|+++..++ ++.+...|..-|+.+.
T Consensus 325 Ll-----------l~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 325 LL-----------LAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HH-----------HHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 11 12278899999999999887 7888899988888775
No 106
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.5 Score=59.18 Aligned_cols=311 Identities=11% Similarity=0.107 Sum_probs=172.1
Q ss_pred hhcCCC-CChHHHHHHHHHHHHhhC-CCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch-hhHHHHhc
Q 000184 376 NQFKPR-LPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS-LWRALQGR 452 (1890)
Q Consensus 376 ~ll~~~-~~~~~~~~a~~aL~~L~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~-~~~~i~~~ 452 (1890)
++|-++ +...+++.|+-+|..|++ +|+. +.-.+....++.+|.+.+-.+...+...+..++..+++ ++.++-
T Consensus 153 KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-- 227 (938)
T KOG1077|consen 153 KLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-- 227 (938)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--
Confidence 444444 456789999999999965 5552 33346788899999988877777888888888876654 333332
Q ss_pred CcHHHHHHhhCC-------------CCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHH---H
Q 000184 453 EGIQLLISLLGL-------------SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDS---A 516 (1890)
Q Consensus 453 g~i~~Lv~lL~~-------------~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a---~ 516 (1890)
.++..|...... +.+-++...++.|.++-.. + ++..+..- .
T Consensus 228 ~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~-~----------------------D~~~r~~l~evl 284 (938)
T KOG1077|consen 228 LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTP-E----------------------DPSTRARLNEVL 284 (938)
T ss_pred HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCC-C----------------------CchHHHHHHHHH
Confidence 123333222221 2345555566666655321 1 12222211 1
Q ss_pred HHHHHHhcCC---hHHHHHHHhCCCHHHHHHHhh--cCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHH
Q 000184 517 SILRNLCNHS---EDIRACVESADAVPALLWLLK--NGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 591 (1890)
Q Consensus 517 ~aL~~L~~~~---~~~r~~i~~~g~i~~Lv~ll~--~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a 591 (1890)
.-+.|-+... .+.+...+...++-..+.+.- +.+++.-.+++..|+.+..+.+ ..++-.+
T Consensus 285 ~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE---------------~NiRYLa 349 (938)
T KOG1077|consen 285 ERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRE---------------TNIRYLA 349 (938)
T ss_pred HHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccc---------------ccchhhh
Confidence 1222222211 111112222222222233222 3456666777777777665444 3556667
Q ss_pred HHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCC
Q 000184 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG 670 (1890)
Q Consensus 592 ~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~-s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 670 (1890)
.+.++.|++.....+ .+..+ ...++..|+ ..|..+|+.|...|..+|..... . -+|.-|++.|.+.
T Consensus 350 LEsm~~L~ss~~s~d----avK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na-k------~IV~elLqYL~tA 416 (938)
T KOG1077|consen 350 LESMCKLASSEFSID----AVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA-K------QIVAELLQYLETA 416 (938)
T ss_pred HHHHHHHHhccchHH----HHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH-H------HHHHHHHHHHhhc
Confidence 777777766533222 22222 677888888 67899999999999999975332 1 2456677777666
Q ss_pred CHHHHHHHHHHHHHHHccC-chhh----------HH--HHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHH
Q 000184 671 SECILVEASRCLAAIFLSV-RENR----------EV--AAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEK 737 (1890)
Q Consensus 671 ~~~v~~~a~~aL~~L~~~~-~~~~----------~~--~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~ 737 (1890)
+..++..-.--+.-|+..- ++.. +. .++..+.+-.++++.. .+++++.+|+..+...++.+..++.
T Consensus 417 d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~ 495 (938)
T KOG1077|consen 417 DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHEN 495 (938)
T ss_pred chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHH
Confidence 6655554443333332110 0100 00 0233344444444433 5678999999999888888777777
Q ss_pred HHhcCc
Q 000184 738 AIAEEI 743 (1890)
Q Consensus 738 ~~~~~~ 743 (1890)
+++.++
T Consensus 496 mVKvgg 501 (938)
T KOG1077|consen 496 MVKVGG 501 (938)
T ss_pred HHHhhh
Confidence 765443
No 107
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.28 E-value=0.00046 Score=55.18 Aligned_cols=41 Identities=29% Similarity=0.362 Sum_probs=38.3
Q ss_pred ChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000184 526 SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 566 (1890)
Q Consensus 526 ~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 566 (1890)
+++++..+.+.|++|+|+++++++++.+++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999973
No 108
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=1.5 Score=58.20 Aligned_cols=455 Identities=14% Similarity=0.070 Sum_probs=213.3
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc--------CCCHHHHHHHHHHHHHhhccCchh
Q 000184 374 LVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT--------MATNEVQEELVRALLKLCNNEGSL 445 (1890)
Q Consensus 374 L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~--------~~~~~v~~~a~~aL~~L~~~~~~~ 445 (1890)
.+.++.+..+...=-.++-+|+.|+...-...... ...+|.++..+. +....+|..|+...|.++......
T Consensus 384 vid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~ 462 (1133)
T KOG1943|consen 384 VIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPS 462 (1133)
T ss_pred HHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChh
Confidence 33445554443334578888888876543222111 134555655553 233578899999998887653221
Q ss_pred -hHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC---CHHHHHHHHHHHHH
Q 000184 446 -WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG---SAKAKEDSASILRN 521 (1890)
Q Consensus 446 -~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~e~a~~aL~~ 521 (1890)
-+-+.+.=.-..|+..+-++.-.+|++|.+++...... .|-+|.=+.+...- +...|.+|-..++.
T Consensus 463 ~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR----------~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~ 532 (1133)
T KOG1943|consen 463 DLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGR----------QGNFPHGISLISTIDYFSVTNRSNCYLDLCV 532 (1133)
T ss_pred hhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhcc----------CCCCCCchhhhhhcchhhhhhhhhHHHHHhH
Confidence 11122212223444455677888899988888766521 12222222222222 23333333333332
Q ss_pred HhcCChHHHHHHHhCCCHHHHHHH-hhcCChhHHHHHHHHHHHHhcCCC----CCcHHHHHHHHhcCCcchHHHHHHHHH
Q 000184 522 LCNHSEDIRACVESADAVPALLWL-LKNGSANGKEIAAKTLNHLIHKSD----TATISQLTALLTSDLPESKVYVLDALK 596 (1890)
Q Consensus 522 L~~~~~~~r~~i~~~g~i~~Lv~l-l~~~~~~~~~~Aa~aL~~L~~~~~----~~~i~~L~~lL~~~~~~~~~~a~~aL~ 596 (1890)
--.+.+.++..+ +..|+.- +...++..++.++++|.+|+.... ....++++.-..+.+...+.....+.+
T Consensus 533 ~ia~~~~y~~~~-----f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ 607 (1133)
T KOG1943|consen 533 SIAEFSGYREPV-----FNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAG 607 (1133)
T ss_pred HHHhhhhHHHHH-----HHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHH
Confidence 222222333222 1222221 344677788888888888765432 245666666555555554444333333
Q ss_pred HHh----hhcCchH-HHHHhhhh-cchHHHHHH-HhcCC-CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhc
Q 000184 597 SML----SVVSFSD-ILREGSAA-NDAVETMIK-ILSST-KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 668 (1890)
Q Consensus 597 ~L~----~~~~~~~-~~~~~~~~-~~~i~~Lv~-lL~s~-~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~ 668 (1890)
.+. .+.+... .-+..+.. ..-++.+.. ....+ ..-.+..-+..+..++.+...........+.-..+...+.
T Consensus 608 ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~ 687 (1133)
T KOG1943|consen 608 EVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLT 687 (1133)
T ss_pred HHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhc
Confidence 322 1110000 11111110 001222222 22222 2344555666777777665544444555555555555554
Q ss_pred CCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHh---cCchHHHHHHhcCcH
Q 000184 669 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLI---LDSEVSEKAIAEEII 744 (1890)
Q Consensus 669 ~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~-~~ev~~~aa~aL~nL~---~~~~~~~~~~~~~~v 744 (1890)
+++ .++..+..++..++..--..... .+...+...+.-+.++ ++.++.--..++.++- .+-..++.+ .
T Consensus 688 ~~n-~i~~~av~av~~l~s~y~~~d~~--~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l-----c 759 (1133)
T KOG1943|consen 688 LPN-QIRDAAVSAVSDLVSTYVKADEG--EEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL-----C 759 (1133)
T ss_pred chH-HHHHHHHHHHHHHHHHHHhcCch--hhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH-----H
Confidence 444 57777888888876431100000 0011233444444444 4445554455555442 111222211 2
Q ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccC----cc---cchHHHHHHHHHHH
Q 000184 745 LPATRVLCEG-TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS----GS---VATSEALDALAILS 816 (1890)
Q Consensus 745 ~~L~~ll~~~-~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~----~~---v~~~~al~~L~~l~ 816 (1890)
..+.....++ ..+.|.+...++.++..... .....+ ..+..+..|++.+.+.. .+ -+.+.|+.++..+.
T Consensus 760 ~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~-~~~~~~--~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~ 836 (1133)
T KOG1943|consen 760 KLVLELLPSDAWAEARQQNVKALAHVCKTVT-SLLFSE--SIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLL 836 (1133)
T ss_pred HHHhccCcccccHHHHHHHHHHHHHHHHHHH-Hhhccc--cHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhh
Confidence 2222222222 33467777888877765333 111111 12345555666665522 22 22378888887664
Q ss_pred hcCCCCCCCCCccceeecCCCChhhHHh----HhhcCChhHHHHHHHHHHHH
Q 000184 817 RSGGASGHVKPAWQVLAEFPKSITPIVS----SIADATPLLQDKAIEILSRL 864 (1890)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~l~~~~~~~~~~a~~~L~~l 864 (1890)
..-.+ | +.-++..+.+++. .-.++-...++-|..++.++
T Consensus 837 ~~l~~-----p----~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 837 DTLSS-----P----KLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred hhhcC-----c----ccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 32221 1 1223345555444 22333455677777777666
No 109
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.046 Score=61.93 Aligned_cols=265 Identities=15% Similarity=0.096 Sum_probs=168.6
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhhcCHHHHHhhhhcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhh
Q 000184 1202 LEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESA 1281 (1890)
Q Consensus 1202 l~~Lv~~L~~~~~~~q~~a~~~ll~~l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~ 1281 (1890)
+..++.+|++..+.++..|+..+++.-.. .--...-.+...++.+..+++.... -..||.+|.|++.....|..+.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~ 81 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQ 81 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHH
Confidence 34678899988787888888887765433 1100111133467778888876655 44688999999998888888776
Q ss_pred cCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhh----CChHHHHHHHHhhcCC-hhhHHHHHHHHHHhh
Q 000184 1282 RQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVE----MNAVDVLCRILSSNCS-MELKGDAAELCGVLF 1356 (1890)
Q Consensus 1282 ~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~----~g~v~~L~~lL~~~~~-~~~~~~a~~~l~~L~ 1356 (1890)
. -++.++.++-++...--...+..|.|++.+......++.+.. .|.+.....+...+-+ ..-....+.++.++.
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 6 566777777665444455678899999987655555544344 3333333334433211 223455678889999
Q ss_pred CChhhHHHHHhhCch--HHHHHHHccCChHH-HHHHHHHHHhccCCchHHHHHHHcC--ChHHHH---------------
Q 000184 1357 GNTRIRSTVAAARCV--EPLVSLLVTEFSPA-QHSVVRALDKLVDDEQLAELVAAHG--AVIPLV--------------- 1416 (1890)
Q Consensus 1357 ~~~~~~~~~~~~~~i--~~Lv~lL~~~~~~~-~~~a~~aL~~L~~~~~~~~~~~~~g--av~~L~--------------- 1416 (1890)
+.+.+|..+.....+ +.|..+ .+.+..+ |...+..|.|.|+|..........+ .++.++
T Consensus 161 ~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~ 239 (353)
T KOG2973|consen 161 QFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMA 239 (353)
T ss_pred hhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHh
Confidence 999998777665532 222222 2333344 5566788888886655555443321 122221
Q ss_pred ------Hhhc-----CCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHH
Q 000184 1417 ------GLLY-----GRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAF 1472 (1890)
Q Consensus 1417 ------~lL~-----~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~a 1472 (1890)
++|. ++++.+|..-+.||..++..+ ..|..+...|+.+.+-++=...++.-...+
T Consensus 240 ~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~a 305 (353)
T KOG2973|consen 240 KLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREA 305 (353)
T ss_pred cCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHH
Confidence 3443 567889999999999999996 788888888888777666655544333333
No 110
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.15 Score=64.74 Aligned_cols=306 Identities=21% Similarity=0.213 Sum_probs=164.1
Q ss_pred cCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccC-chhhHHHHhhhCChHHH
Q 000184 1253 LGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSEN-PSRALAVADVEMNAVDV 1331 (1890)
Q Consensus 1253 ~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~-~~~~~~~~~v~~g~v~~ 1331 (1890)
+.+..++|.|...|..+-..+ +=++..++..+..+.-+... |-+-|.++.... .. ......+
T Consensus 183 s~~~m~QyHalglLyqirk~d--------rla~sklv~~~~~~~~~~~~-A~~~lir~~~~~l~~--------~~~~~s~ 245 (865)
T KOG1078|consen 183 SDNIMVQYHALGLLYQIRKND--------RLAVSKLVQKFTRGSLKSPL-AVCMLIRIASELLKE--------NQQADSP 245 (865)
T ss_pred cHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHccccccchh-HHHHHHHHHHHHhhh--------cccchhh
Confidence 334467788866665542221 22455566655553332222 333333333210 00 1233444
Q ss_pred HHHHHhhc---CChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHH
Q 000184 1332 LCRILSSN---CSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVA 1407 (1890)
Q Consensus 1332 L~~lL~~~---~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~ 1407 (1890)
+.+++++. ..+.+..++++....|..... ..+ ..++..|-.++.++....|..|.+.|.+++ ..++....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~-- 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--REL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTV-- 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccc--
Confidence 45554422 245677778877776643321 111 126778888889999999999999999998 44433221
Q ss_pred HcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccC
Q 000184 1408 AHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAK 1487 (1890)
Q Consensus 1408 ~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~ 1487 (1890)
+=..|-.++.+.|..+-..|+-.|.+-+... +...+ +.++.....+-+|+.......+++.|+..-.-.
T Consensus 320 ---cN~elE~lItd~NrsIat~AITtLLKTG~e~--sv~rL-----m~qI~~fv~disDeFKivvvdai~sLc~~fp~k- 388 (865)
T KOG1078|consen 320 ---CNLDLESLITDSNRSIATLAITTLLKTGTES--SVDRL-----MKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK- 388 (865)
T ss_pred ---cchhHHhhhcccccchhHHHHHHHHHhcchh--HHHHH-----HHHHHHHHHhccccceEEeHHHHHHHHhhccHH-
Confidence 1245667788888888888888888888774 22221 222333333333333333334444443322100
Q ss_pred CccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcC-CCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhh
Q 000184 1488 GPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEH-PQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLL 1566 (1890)
Q Consensus 1488 ~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~-~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~ 1566 (1890)
....+.-|.++|.. +.|-.-++...+++..+.+. ++ ....++..|-.+.++. +..+.+.+.|..++
T Consensus 389 ---~~~~m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~~pd-------sKe~~L~~LCefIEDc--e~~~i~~rILhlLG 455 (865)
T KOG1078|consen 389 ---HTVMMNFLSNMLRE-EGGFEFKRAIVDAIIDIIEENPD-------SKERGLEHLCEFIEDC--EFTQIAVRILHLLG 455 (865)
T ss_pred ---HHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHhCcc-------hhhHHHHHHHHHHHhc--cchHHHHHHHHHHh
Confidence 12245666667765 55566666677888877653 33 2233566666666532 23556666666666
Q ss_pred cccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000184 1567 LEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIA 1607 (1890)
Q Consensus 1567 ~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~ 1607 (1890)
.+ .-....-..-+......+-=.+.-+|..|..||.+++
T Consensus 456 ~E--gP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg 494 (865)
T KOG1078|consen 456 KE--GPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG 494 (865)
T ss_pred cc--CCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh
Confidence 42 1111112223333333333456777888888888887
No 111
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.10 E-value=0.13 Score=62.93 Aligned_cols=302 Identities=17% Similarity=0.162 Sum_probs=191.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhc-CChhhHHHHHHHHHHhhCChhhHHH
Q 000184 1286 QPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN-CSMELKGDAAELCGVLFGNTRIRST 1364 (1890)
Q Consensus 1286 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~-~~~~~~~~a~~~l~~L~~~~~~~~~ 1364 (1890)
+.+..++-+.+.++|.+|.+.+..+..+...-..+ .+.+.-..++.-|... +.+.=+++|.+.++.+..-..+...
T Consensus 28 ~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~---~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~ 104 (371)
T PF14664_consen 28 ERIQCMLLSDSKEVRAAGYRILRYLISDEESLQIL---LKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE 104 (371)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHH---HHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc
Confidence 33443454455889999999999988877666655 3556555566667543 3344567888888777555433322
Q ss_pred HHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChh
Q 000184 1365 VAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS 1443 (1890)
Q Consensus 1365 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~ 1443 (1890)
...+.+..+|+...+.++..+.-|.+.|.+++ .+++. +...|++..|...+.++....-+..+.++..+-.+ |.
T Consensus 105 -~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~-p~ 179 (371)
T PF14664_consen 105 -IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS-PR 179 (371)
T ss_pred -CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-cc
Confidence 35677889999999999999999999999999 77765 44789999999999988778888899999999888 68
Q ss_pred hHHHHHHcCcHHHHHHHhccC-------Ch--hHHHHHHHHHHHH-HhcccccCC-ccccCChHHHHHHhhccCCChhhH
Q 000184 1444 CKLEMVKAGVIESVLDILHEA-------PD--FLCSAFAELLRIL-TNNAGIAKG-PSAAKVVEPLFLLLTRSEFGPDGQ 1512 (1890)
Q Consensus 1444 ~~~~l~~~~~i~~L~~lL~~~-------~~--~v~~~aa~~l~~L-~~~~~~~~~-~~~~~~v~~Li~lL~~~~~~~~v~ 1512 (1890)
.|.-+...--++.++.-+.+. +. +....++.++..+ .+.++.... ..+.+++..|+..|..|. +.+|
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~--~~ir 257 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN--PEIR 257 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC--HHHH
Confidence 887665544455555554333 11 1122233333222 222221111 124478999999999988 8899
Q ss_pred HHHHHHHHHhhcCCCcc--ccc----ccccCCchhhhhhcc----------C----CCCHHHHHHHHHHHHHhhcccccc
Q 000184 1513 HSALQVLVNILEHPQCR--ADY----SLTSHQAIEPLIPLL----------D----SPAPAVQQLAAELLSHLLLEEQLQ 1572 (1890)
Q Consensus 1513 ~~al~aL~nl~~~~~~~--~~~----~~~~~~~i~~Lv~lL----------~----s~~~~vq~~A~~aL~~l~~~~~~~ 1572 (1890)
+..+..|..+..-+... ..+ .....+-...-..+. . ....-+.+.-+-.|.
T Consensus 258 ~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~--------- 328 (371)
T PF14664_consen 258 KAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLA--------- 328 (371)
T ss_pred HHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHH---------
Confidence 99999999986442211 111 011122111111111 0 011112222222222
Q ss_pred cchhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHh
Q 000184 1573 KDPVTQQVIGPLIRVLGSG-IHILQQRAVKALVSIA 1607 (1890)
Q Consensus 1573 ~~l~~~~~i~~Lv~lL~s~-~~~v~~~A~~aL~~l~ 1607 (1890)
.+...|.++.|+.+..+. ++.+..+|..-|+.+-
T Consensus 329 -ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 329 -ILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred -HHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 345678899999999775 7888888888777663
No 112
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.1 Score=61.83 Aligned_cols=258 Identities=15% Similarity=0.156 Sum_probs=172.3
Q ss_pred HHHHHHHHhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCC-CCccccchhhhcCChHHHHHHHhc
Q 000184 84 QAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGA-KDYVGSKIFSTEGVVPVLWEQLKN 162 (1890)
Q Consensus 84 ~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~-~~~~~~~~~~~~g~ip~L~~ll~~ 162 (1890)
....-+..++.-++...-++..++++.|+.+|.+++.++..+....|..++..+. ++.. +| -..|
T Consensus 103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~-------eg-AevL------ 168 (536)
T KOG2734|consen 103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESE-------EG-AEVL------ 168 (536)
T ss_pred HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhccccccc-------cc-HHHH------
Confidence 3445566677677777788888999999999999999999888888888887322 0000 00 0011
Q ss_pred cCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHH------HHHHHHHHHHHHhhcCchhhhHhhc
Q 000184 163 GLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSS------TQAHVCFLLACMMEEDVSVCSRVLA 236 (1890)
Q Consensus 163 ~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~------v~~~a~~~L~~L~~~~~~~~~~i~~ 236 (1890)
..++++.+.++.|++-+..=+.. -..++...+-|+..-.+..+..+++
T Consensus 169 --------------------------idaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e 222 (536)
T KOG2734|consen 169 --------------------------IDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE 222 (536)
T ss_pred --------------------------HHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH
Confidence 12244455556665555432222 2345666676777777778888888
Q ss_pred cchHHHHHHHHcCC-CCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHH
Q 000184 237 ADATKQLLKLLGSG-NEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA 315 (1890)
Q Consensus 237 ~g~i~~Lv~lL~~~-~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~ 315 (1890)
.|.+..|+.-+... .-..-+..|..+|.-+-.++.+++.......|+..+++-+..-.+
T Consensus 223 ~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~-------------------- 282 (536)
T KOG2734|consen 223 QGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR-------------------- 282 (536)
T ss_pred hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc--------------------
Confidence 88888888744332 223457788888888888777788888888888888776632100
Q ss_pred HhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHH
Q 000184 316 NISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALA 395 (1890)
Q Consensus 316 nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~ 395 (1890)
++|. ..+.+.+-+.-..+|+
T Consensus 283 -----------------~dP~-------------------------------------------~~~E~EmmeNLFdcLC 302 (536)
T KOG2734|consen 283 -----------------HDPA-------------------------------------------TVDEEEMMENLFDCLC 302 (536)
T ss_pred -----------------cCCC-------------------------------------------CcCHHHHHHHHHHHHH
Confidence 0110 0111224556667788
Q ss_pred HhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--hhhHHHHhcCcHHHHHHhh
Q 000184 396 SLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG--SLWRALQGREGIQLLISLL 462 (1890)
Q Consensus 396 ~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~--~~~~~i~~~g~i~~Lv~lL 462 (1890)
++...+.++.++....++....-+++. ....+..+++.|-....+.+ .+|..+++..|+..+..+.
T Consensus 303 s~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 303 SLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 888889999999998898877766665 33556778888988877766 6788888888876666543
No 113
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.0065 Score=72.75 Aligned_cols=300 Identities=15% Similarity=0.092 Sum_probs=192.8
Q ss_pred HHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCC
Q 000184 429 EELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGS 508 (1890)
Q Consensus 429 ~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 508 (1890)
..++.+|..++.+-.-.+.-+.+....++|+++|..++..+...+...++|+.-.....+..+.+.|.|..|++++.+.+
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD 486 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD 486 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence 45566666776654445556667788999999999988888888999999998767777999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChH-HHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcch
Q 000184 509 AKAKEDSASILRNLCNHSED-IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPES 587 (1890)
Q Consensus 509 ~~~~e~a~~aL~~L~~~~~~-~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~ 587 (1890)
...|.+..|+|+++....++ .+-.....-++..++.+..++...++....+.|.|+.++.... + ...++
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~kn--E--------kskdv 556 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKN--E--------KSKDV 556 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccc--c--------cccee
Confidence 99999999999999875433 3445667778999999999999999999999999998743210 0 00000
Q ss_pred HHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHH-HcCchHHHHHh
Q 000184 588 KVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI-AVKTLWSVMKL 666 (1890)
Q Consensus 588 ~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~-~~g~i~~Lv~l 666 (1890)
+....+ ++. -...|++-+.+.+|..-...+..|.+++..++..++.+. +...+..+.+.
T Consensus 557 ----------~~K~~p-----~~y-----lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~ei 616 (743)
T COG5369 557 ----------FIKATP-----RRY-----LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEI 616 (743)
T ss_pred ----------EEecCh-----HHH-----HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHH
Confidence 000000 111 145667777777777666778888888887666555443 33333333333
Q ss_pred h---------cCCC--HHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHH----------HhCCCCHHHHHHHHHHH
Q 000184 667 L---------DVGS--ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV----------LAGSPVLEVAEQATCAL 725 (1890)
Q Consensus 667 L---------~~~~--~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~----------ll~~~~~ev~~~aa~aL 725 (1890)
+ .+++ ..+..+-.....++... +|..+.++. --..++.|.--.+.|..
T Consensus 617 l~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~-----------~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~ 685 (743)
T COG5369 617 LDEFAGRTPLSPGSKEEHVLLPISYTIVNLSEN-----------SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWII 685 (743)
T ss_pred HHHHcccCCCCCCCCcccccCccceeeeccccc-----------ccccccceecCCCccccccccCCCchhhhhccceEE
Confidence 3 1111 11111111111222111 122222221 11235666777788888
Q ss_pred HHHhcC---ch------HHHHH-HhcCcHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000184 726 ANLILD---SE------VSEKA-IAEEIILPATRVLCEGTISGKTLAAAAIARL 769 (1890)
Q Consensus 726 ~nL~~~---~~------~~~~~-~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L 769 (1890)
.|+... .+ .+.+. .+.|.-+.+.+.-...+..+|+.+-.||.++
T Consensus 686 in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 686 INLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred EecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 887521 11 23333 3566666666666666667999999898875
No 114
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.039 Score=71.36 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=174.2
Q ss_pred HHHHHHHHHHhhCCCcc-chhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCC-
Q 000184 387 QERTIEALASLYGNPLL-SIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL- 464 (1890)
Q Consensus 387 ~~~a~~aL~~L~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~- 464 (1890)
|-+|+.-|+...+-..- ...-..-|..|-.+++|+++..+.+---+..-..+-.-.+.....+++.+|-..++..|.+
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 45666666554332221 1112235788999999999888877666555555555546666667777887777787776
Q ss_pred C--CHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHH
Q 000184 465 S--SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPA 541 (1890)
Q Consensus 465 ~--~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~ 541 (1890)
+ +++.+..|+.+|+.++.+..-.+....+.+.+..-...|+++ .+-.+..++-+|+.|-.+.++.|+.=.+.++...
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 2 568888999999999988888899999999999999999986 6788999999999999988899998889999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHH
Q 000184 542 LLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETM 621 (1890)
Q Consensus 542 Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L 621 (1890)
|+.++.+.-++++..|..+|..+....... .++.....-+-+. +......++..+ ..|.-.+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~------------fde~~~~~~~~~~----l~~~~~~~E~~i--~~~~~~l 708 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDN------------FDEQTLVVEEEID----LDDERTSIEDLI--IKGLMSL 708 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccc------------cchhhhhhhhhhc----chhhhhhHHHHH--HhhHHHH
Confidence 999999999999999999999997753210 0000000000000 000000001111 1123477
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcChhH
Q 000184 622 IKILSSTKEETQAKSASALAGIFETRKDL 650 (1890)
Q Consensus 622 v~lL~s~~~~~~~~A~~aL~~L~~~~~~~ 650 (1890)
+.+++.+++-++..-+.+|..+..+....
T Consensus 709 l~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 709 LALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 88889999999999999999999876544
No 115
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.94 Score=59.98 Aligned_cols=340 Identities=16% Similarity=0.113 Sum_probs=176.4
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCC-hHHHHHHHHHHHHHhccCchhhHH
Q 000184 1242 AAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGL-EREQHAAIAALVRLLSENPSRALA 1320 (1890)
Q Consensus 1242 g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~-~~~~~~A~~aL~~L~~~~~~~~~~ 1320 (1890)
.+++.|...|++.+..+|..||.-++++..-.. .......|...++++.+.. +..=|-|+-+|.+++.-.-.....
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 678889999999999999999999999986222 2234557888888888765 455667999999999633111111
Q ss_pred HHhhhCChHHHHHHHHhhc-------CChhhHHHHHHHHHHhhCChhhH--HHHHhhCchHHHHHHHccCChHHHHHHHH
Q 000184 1321 VADVEMNAVDVLCRILSSN-------CSMELKGDAAELCGVLFGNTRIR--STVAAARCVEPLVSLLVTEFSPAQHSVVR 1391 (1890)
Q Consensus 1321 ~~~v~~g~v~~L~~lL~~~-------~~~~~~~~a~~~l~~L~~~~~~~--~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~ 1391 (1890)
+ ..+++.+++-|.-. ....+++.|.-+++-+...-+-. ......-.-.-|+..+-+.+-..|..|..
T Consensus 418 l----~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 418 L----EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred H----HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 1 13566666666421 12357777777776664332110 11111111112334455788899999999
Q ss_pred HHHhccCCchHHHHHHHcCCh---HHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHH-hccCChh
Q 000184 1392 ALDKLVDDEQLAELVAAHGAV---IPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDI-LHEAPDF 1467 (1890)
Q Consensus 1392 aL~~L~~~~~~~~~~~~~gav---~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~l-L~~~~~~ 1467 (1890)
|+.+..+-. |=+ -+|+...+.-...-|.+.-..+..--...+..+.- +++.|+.. +.+=+..
T Consensus 494 AlqE~VGR~---------~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~-----~f~~L~t~Kv~HWd~~ 559 (1133)
T KOG1943|consen 494 ALQENVGRQ---------GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREP-----VFNHLLTKKVCHWDVK 559 (1133)
T ss_pred HHHHHhccC---------CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHH-----HHHHHHhcccccccHH
Confidence 988775211 111 12222222222233333333322111111122211 33333322 4444556
Q ss_pred HHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCccc-ccccccCC-------c
Q 000184 1468 LCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRA-DYSLTSHQ-------A 1539 (1890)
Q Consensus 1468 v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~-~~~~~~~~-------~ 1539 (1890)
++..+|.++..|+...-. -.....++||+....+++ ...|+....+.+.++....... .+.-.... .
T Consensus 560 irelaa~aL~~Ls~~~pk---~~a~~~L~~lld~~ls~~--~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~i 634 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPK---YLADYVLPPLLDSTLSKD--ASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSI 634 (1133)
T ss_pred HHHHHHHHHHHHHHhhHH---hhcccchhhhhhhhcCCC--hHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhh
Confidence 677788777776432210 012345777777777666 7777765555555432211111 00001111 1
Q ss_pred hhhhhhccCCC--CHHHHHHHHHHHHHhhcc-cccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000184 1540 IEPLIPLLDSP--APAVQQLAAELLSHLLLE-EQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIAL 1608 (1890)
Q Consensus 1540 i~~Lv~lL~s~--~~~vq~~A~~aL~~l~~~-~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~ 1608 (1890)
++++...-... ..-++...++.+..++.. ..+..+....+....+-+.+++.+ .+|..|..++..+..
T Consensus 635 i~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 635 IPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred ccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence 22221111111 133455556666666653 223333333333344444443333 788999999998863
No 116
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.0045 Score=74.04 Aligned_cols=305 Identities=15% Similarity=0.147 Sum_probs=188.3
Q ss_pred HHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCC
Q 000184 173 LLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE 252 (1890)
Q Consensus 173 ~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 252 (1890)
.++.+|.+++.+-...|..+.+...++.|+++|+.|+.-+..-+...+++.....+.-...+.+.|.+..|++++.+. |
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK-D 486 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK-D 486 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-h
Confidence 456778888876666666678899999999999998888888888888888877776778889999999999999975 5
Q ss_pred HhHHHHHHHHHHHhhhcCHHH-HHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhcc
Q 000184 253 ASVRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQS 331 (1890)
Q Consensus 253 ~~~~~~Aa~aL~~Ls~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~ 331 (1890)
...|....|.|+++..++.++ +-.....-|+..++.+...+. -.+|+.+...|+|+.++.+..
T Consensus 487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc---------~~vq~q~lQilrNftc~~~kn------- 550 (743)
T COG5369 487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC---------FKVQHQVLQILRNFTCDTSKN------- 550 (743)
T ss_pred hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc---------cccHHHHHHHHHhcccccccc-------
Confidence 579999999999999876654 446677789999999997764 678999999999998743220
Q ss_pred ccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHh-hCCCccchhhhhc
Q 000184 332 LESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIKLENS 410 (1890)
Q Consensus 332 ~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L-~~~~~~~~~l~~~ 410 (1890)
.. ..+. -.+..+..-+...|.+.++...+-.+++. +-.|.++ +.+...+..+.+.
T Consensus 551 ---Ek----skdv----------------~~K~~p~~ylfk~l~~k~e~~np~~i~~~-~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 551 ---EK----SKDV----------------FIKATPRRYLFKRLIDKYEENNPMEILEG-CYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred ---cc----ccee----------------EEecChHHHHHHHHHHHHHhcCchhhhhh-HHHHHHHHhccchHHHHHHhH
Confidence 00 0000 00011222356677777777777655655 4444444 4455444433332
Q ss_pred C-cHHHHHHHhc---------CC--CHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC----CCCHHHHHHHH
Q 000184 411 E-AKRLLVGLIT---------MA--TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG----LSSEQQQECSV 474 (1890)
Q Consensus 411 g-~i~~Lv~lL~---------~~--~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~A~ 474 (1890)
. .+..+.+.|. .+ ...+...-.....++..+...+.+.+... |.+= ..+ .++.+.-.+..
T Consensus 607 ~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D-~~~~d~~~~NdE~~~agi 682 (743)
T COG5369 607 EDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLD-NMKKDSTTRNDELSIAGI 682 (743)
T ss_pred HHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---CCcc-ccccccCCCchhhhhccc
Confidence 2 2222222221 00 00111001111112222211111111100 2221 112 23556777777
Q ss_pred HHHHHcccCCh----------hcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000184 475 ALLCLLSNEND----------DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 523 (1890)
Q Consensus 475 ~aL~nL~~~~~----------~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~ 523 (1890)
|...|+.- .. +..+.+.+.|.-+-|+.+-..+++.+||.+-.+|.++-
T Consensus 683 w~~in~~w-~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 683 WIIINLSW-KEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred eEEEeccc-CccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 87777652 21 22344455555556666666678899999999998873
No 117
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.14 Score=60.85 Aligned_cols=187 Identities=13% Similarity=0.112 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHhCCCHHHHH
Q 000184 468 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH----SEDIRACVESADAVPALL 543 (1890)
Q Consensus 468 ~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~----~~~~r~~i~~~g~i~~Lv 543 (1890)
-++.+|.+++.-+.-+..-......-..+.......+.+..-..|+.++|+++||+.. .|..+..-.+ .+.
T Consensus 406 lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR--~sg--- 480 (728)
T KOG4535|consen 406 LVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQER--FSG--- 480 (728)
T ss_pred HHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHH--HHH---
Confidence 3455566777666653222233333444556666667777778899999999999851 0110000000 000
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcC-chH-HHHHhhhhcchHHHH
Q 000184 544 WLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVS-FSD-ILREGSAANDAVETM 621 (1890)
Q Consensus 544 ~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~-~~~~~~~~~~~i~~L 621 (1890)
.+-.+.+.+.+.|. -+.+.++.++.++|++++.+.. ..+ ..++.+ .+.+..+
T Consensus 481 ---------~ll~~~~~~A~~~~---------------Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~--~~~~~~l 534 (728)
T KOG4535|consen 481 ---------LLLLKMLRSAIEAS---------------ADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII--EESIQAL 534 (728)
T ss_pred ---------HHHHHHHHHHHHhh---------------hhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH--HHHHHhc
Confidence 00111122222221 1233455666666666554321 111 011111 2223333
Q ss_pred HH-HhcCCCHHHHHHHHHHHHHHhhcChh-HHHHHHHcCchHHHHHhh-cCCCHHHHHHHHHHHHHH
Q 000184 622 IK-ILSSTKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAI 685 (1890)
Q Consensus 622 v~-lL~s~~~~~~~~A~~aL~~L~~~~~~-~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L 685 (1890)
.+ ..-.+.-++|-++|.+++||.++..- .++.-...-..+.|..++ ...+..++.+|+.+|..-
T Consensus 535 ~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 535 ISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred ccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 33 23345678999999999999987431 122112233577788777 456778999999998654
No 118
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.05 Score=70.36 Aligned_cols=201 Identities=15% Similarity=0.150 Sum_probs=151.2
Q ss_pred cCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC---CHHHHHHHHHHHHHHhcCChH
Q 000184 452 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG---SAKAKEDSASILRNLCNHSED 528 (1890)
Q Consensus 452 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~e~a~~aL~~L~~~~~~ 528 (1890)
-|..|.++++|+++..+++---+.+=..+-.-++..+..+++.+|-..+++.|..+ +++.|..|+-+|.-++..-+-
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 46679999999999999998877776666556778889999999999999999873 578999999999999986566
Q ss_pred HHHHHHhCCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHH
Q 000184 529 IRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDI 607 (1890)
Q Consensus 529 ~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~ 607 (1890)
.+....+.+.+...+..+.++ .+-.++-.+-+|+.|..+.+.
T Consensus 591 GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~------------------------------------- 633 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDE------------------------------------- 633 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcch-------------------------------------
Confidence 677777888888888888875 466777778888887764432
Q ss_pred HHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC----hhHHHH-----------HHHcCchH----HHHHhhc
Q 000184 608 LREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR----KDLRES-----------SIAVKTLW----SVMKLLD 668 (1890)
Q Consensus 608 ~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~----~~~~~~-----------~~~~g~i~----~Lv~lL~ 668 (1890)
.|..-...++.+.|..+|+++-+++|.+|..+|..+-.+. ++.... +..+..++ .++.++.
T Consensus 634 Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vs 713 (1387)
T KOG1517|consen 634 ARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVS 713 (1387)
T ss_pred hhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHh
Confidence 1222334567888899999999999999999999888752 211111 11222333 6777778
Q ss_pred CCCHHHHHHHHHHHHHHHccC
Q 000184 669 VGSECILVEASRCLAAIFLSV 689 (1890)
Q Consensus 669 ~~~~~v~~~a~~aL~~L~~~~ 689 (1890)
.+++-++++.+.+|..+..+.
T Consensus 714 dgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 714 DGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccchHHHHHHHHHHHHHHHhh
Confidence 888888888888888887654
No 119
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.77 E-value=0.071 Score=67.46 Aligned_cols=274 Identities=15% Similarity=0.116 Sum_probs=164.5
Q ss_pred HHHHHHhccCChhHHHHHHhcCCHHHHHHhh----------cCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHH
Q 000184 175 TGALRNLSTSTEGFWAATVQAGGIDILVKLL----------TLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLL 244 (1890)
Q Consensus 175 ~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL----------~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv 244 (1890)
+.+|+-++.++. ....+....++..|.++- ..++.++...|.+||+|....++..+..+++.|..+.++
T Consensus 2 L~~LRiLsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 345666665553 334455556677777665 346788999999999999999998899999999999999
Q ss_pred HHHcCCC----CHhHHHHHHHHHHHhhhcCHHHHHHHHh-cCChHHHHHhhcCCCcccc--------chhhhHHHHHHHH
Q 000184 245 KLLGSGN----EASVRAEAAGALKSLSDHCKDARREIAG-SNGIPAMINATIAPSKEFM--------QGEYAQALQENAM 311 (1890)
Q Consensus 245 ~lL~~~~----~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~--------~~~~~~~l~e~a~ 311 (1890)
+.|+... +.++.-...+.|.-++...++.+..+++ .+|+..++..+...-+... ....+......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 9998862 3578888888888888777777766655 4888888877755432211 1123567777888
Q ss_pred HHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhccc---ccCCCCCChhhhHHHHHhhcCCCCChHHHH
Q 000184 312 CALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSK---AESTKPSDPLIVEQTLVNQFKPRLPFLVQE 388 (1890)
Q Consensus 312 ~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~---~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~ 388 (1890)
..+.|+....+.... .+..+.+..++.++... ...... ......
T Consensus 161 KllFNit~~~~~~~~---------------~~~~~~~~~l~~il~~~l~~~~~~~~------------------l~~~~~ 207 (446)
T PF10165_consen 161 KLLFNITLHYPKSVP---------------EEFSPSIPHLVSILRRLLPPPPSSPP------------------LDPPHS 207 (446)
T ss_pred HHHHHhhhccCcccc---------------hhhhHHHHHHHHHHHHHhccCCCCCc------------------chhhHH
Confidence 888898753222111 01123333333333211 111111 111233
Q ss_pred HHHHHHHHh-hCCCcc-----------chhhhhcCcHHHHHHHhcC-----C---CHHHHHHHHHHHHHhhccCchhhHH
Q 000184 389 RTIEALASL-YGNPLL-----------SIKLENSEAKRLLVGLITM-----A---TNEVQEELVRALLKLCNNEGSLWRA 448 (1890)
Q Consensus 389 ~a~~aL~~L-~~~~~~-----------~~~l~~~g~i~~Lv~lL~~-----~---~~~v~~~a~~aL~~L~~~~~~~~~~ 448 (1890)
.++.+|.++ ..+... ...-.....+..|+.+|.. . -.+...-.+..|.+++..+...++.
T Consensus 208 ~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~ 287 (446)
T PF10165_consen 208 HAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKY 287 (446)
T ss_pred HHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHH
Confidence 444444443 100000 0011112244555555531 1 1133445566666666665444444
Q ss_pred HHh---------------cCc-HHHHHHhhCCCCHHHHHHHHHHHHHccc
Q 000184 449 LQG---------------REG-IQLLISLLGLSSEQQQECSVALLCLLSN 482 (1890)
Q Consensus 449 i~~---------------~g~-i~~Lv~lL~~~~~~v~~~A~~aL~nL~~ 482 (1890)
+.. .+. -..|++++.++.+.++..++..|..||.
T Consensus 288 lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 288 LRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 432 223 4789999999999999999999999985
No 120
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.77 E-value=0.08 Score=66.96 Aligned_cols=255 Identities=16% Similarity=0.121 Sum_probs=159.7
Q ss_pred HHHHHhhCCCccchhhhhcCcHHHHHHHh----------cCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHh
Q 000184 392 EALASLYGNPLLSIKLENSEAKRLLVGLI----------TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 461 (1890)
Q Consensus 392 ~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL----------~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 461 (1890)
.+|.-+++++.+...+....++..|...- ...++.+...|++||.|+...++..++...+.|+.+.+++.
T Consensus 3 ~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 3 ETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 34555556666666666666666665544 35678999999999999999988889899999999999999
Q ss_pred hCCC-----CHHHHHHHHHHHHHcccCChhcHHHHHh-cCCcHHHHHhccCC-----------------CHHHHHHHHHH
Q 000184 462 LGLS-----SEQQQECSVALLCLLSNENDDSKWAITA-AGGIPPLVQILESG-----------------SAKAKEDSASI 518 (1890)
Q Consensus 462 L~~~-----~~~v~~~A~~aL~nL~~~~~~~~~~i~~-~g~i~~Lv~lL~~~-----------------~~~~~e~a~~a 518 (1890)
|+.. +.++.....+.|.-++....+.+..+++ .+++..++..|... +...-..+..+
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9976 7899999999999888777777766664 58888888766321 22334567888
Q ss_pred HHHHhcCChHHHHHHHhCCCHHHHHHHhhcC---------ChhHHHHHHHHHHHHhcC-------------------CCC
Q 000184 519 LRNLCNHSEDIRACVESADAVPALLWLLKNG---------SANGKEIAAKTLNHLIHK-------------------SDT 570 (1890)
Q Consensus 519 L~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~---------~~~~~~~Aa~aL~~L~~~-------------------~~~ 570 (1890)
+.|++.+.+.... -.....++.|+.++..- .......+..+|.|+--. .+.
T Consensus 163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 9999876443322 01345566666665432 123566777777776210 011
Q ss_pred CcHHHHHHHHhc----CC-cchHHHHHHHHHHHhhhcCchHHHHHhh---------------hhcch-HHHHHHHhcCCC
Q 000184 571 ATISQLTALLTS----DL-PESKVYVLDALKSMLSVVSFSDILREGS---------------AANDA-VETMIKILSSTK 629 (1890)
Q Consensus 571 ~~i~~L~~lL~~----~~-~~~~~~a~~aL~~L~~~~~~~~~~~~~~---------------~~~~~-i~~Lv~lL~s~~ 629 (1890)
..+..|+.+|.. .. .+..+...-.+.-|..+.......|+.+ ...+. -..|++++.+..
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~ 321 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD 321 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC
Confidence 334445555421 11 0111111111111112211111122221 11222 346899999988
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 000184 630 EETQAKSASALAGIFETR 647 (1890)
Q Consensus 630 ~~~~~~A~~aL~~L~~~~ 647 (1890)
+.++..++..|..||..+
T Consensus 322 ~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 322 PQLKDAVAELLFVLCKED 339 (446)
T ss_pred chHHHHHHHHHHHHHhhh
Confidence 999999999999999764
No 121
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=3.3 Score=53.22 Aligned_cols=273 Identities=19% Similarity=0.157 Sum_probs=168.7
Q ss_pred HHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc-cccccchh
Q 000184 1498 LFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE-EQLQKDPV 1576 (1890)
Q Consensus 1498 Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~-~~~~~~l~ 1576 (1890)
+-.++.+.. ..+...|.+++.++..... . .-...+..|=.+++++.+.+|-.|.++|..+++- ++. +.
T Consensus 250 l~s~l~~K~--emV~~EaArai~~l~~~~~---r---~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---v~ 318 (865)
T KOG1078|consen 250 LESCLRHKS--EMVIYEAARAIVSLPNTNS---R---ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---VT 318 (865)
T ss_pred HHHHHhchh--HHHHHHHHHHHhhccccCH---h---hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---cc
Confidence 334444434 6777888888888833211 1 1123788888999999999999999999999972 111 11
Q ss_pred ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhh----cCCCCcHHHHHHHHHHHHhhhhh
Q 000184 1577 TQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ----ADPSLPHALWESAASVLSSILQF 1652 (1890)
Q Consensus 1577 ~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~----~~~~~~~~~~~~a~~~l~~~~~~ 1652 (1890)
.. =.-|-.+..+.+..+-..|+..|.+-+... -|..|.+.+.+ -++..+....+ |+..|+....-
T Consensus 319 ~c--N~elE~lItd~NrsIat~AITtLLKTG~e~--------sv~rLm~qI~~fv~disDeFKivvvd-ai~sLc~~fp~ 387 (865)
T KOG1078|consen 319 VC--NLDLESLITDSNRSIATLAITTLLKTGTES--------SVDRLMKQISSFVSDISDEFKIVVVD-AIRSLCLKFPR 387 (865)
T ss_pred cc--chhHHhhhcccccchhHHHHHHHHHhcchh--------HHHHHHHHHHHHHHhccccceEEeHH-HHHHHHhhccH
Confidence 11 133445566777788888888888877643 24555554433 34556666666 55556554210
Q ss_pred chhhhcccchHHHHHhhc-cCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHccCCcHHHHHHHHHHHhhch
Q 000184 1653 SSEFYLEVPVAVLVRLLR-SGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNG 1731 (1890)
Q Consensus 1653 ~~~~~~~~~v~~Lv~ll~-~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~~~a~~al~~L~~~~ 1731 (1890)
. -..-+.-|.++|. ++..+-+.+...++..+....+..++ .+...|+.+..|..-.+.+.+-|.-|+-+.
T Consensus 388 k----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce~~~i~~rILhlLG~Eg 458 (865)
T KOG1078|consen 388 K----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCEFTQIAVRILHLLGKEG 458 (865)
T ss_pred H----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhccchHHHHHHHHHHhccC
Confidence 0 0123566667765 45667888888888888775555544 588899999998667888888888887642
Q ss_pred hhhhhhhccccccccccccCC---hHHHHHHHHHHHHHhcchhhhhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHH
Q 000184 1732 KIRESKATKSAILPLSQYLLD---PQTQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAIC 1808 (1890)
Q Consensus 1732 ~~r~~i~~~~~i~~L~~~~~~---~~~~~~~~~~la~l~~~~~~~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~ 1808 (1890)
. .+...-.+.....+. ....++++++.|+-..| ...++++ .+....|..++.++ +.++|..|..
T Consensus 459 P-----~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~-----~sI~vllkRc~~D~-DdevRdrAtf 525 (865)
T KOG1078|consen 459 P-----KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLL-----PSILVLLKRCLNDS-DDEVRDRATF 525 (865)
T ss_pred C-----CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCcc-----ccHHHHHHHHhcCc-hHHHHHHHHH
Confidence 2 111111111111111 12344455555555555 2222122 23455567788886 9999999999
Q ss_pred HHHHhh
Q 000184 1809 ALQNLV 1814 (1890)
Q Consensus 1809 aL~~l~ 1814 (1890)
+|.++.
T Consensus 526 ~l~~l~ 531 (865)
T KOG1078|consen 526 YLKNLE 531 (865)
T ss_pred HHHHhh
Confidence 999887
No 122
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.045 Score=68.40 Aligned_cols=266 Identities=17% Similarity=0.127 Sum_probs=157.2
Q ss_pred CcHHHHHHhhCCC-CHHHHHHHHHHH--HHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHH
Q 000184 453 EGIQLLISLLGLS-SEQQQECSVALL--CLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI 529 (1890)
Q Consensus 453 g~i~~Lv~lL~~~-~~~v~~~A~~aL--~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~ 529 (1890)
+..+.|.+.|++. ++.++..++-.| .++.+.+.+ ....|-..|...+.-.-|.|.-+++-+... ..+
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~e---------iYe~lKevLy~D~AvsGEAAgi~MGl~mlG-t~~ 482 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEE---------IYEKLKEVLYNDSAVSGEAAGIAMGLLMLG-TAN 482 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccHH---------HHHHHHHHHhccchhhhhHHHHhhhhHhhC-cCc
Confidence 4568888888865 566677777544 455543333 334444556666555556555555544432 111
Q ss_pred HHHHHhCCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHH
Q 000184 530 RACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDIL 608 (1890)
Q Consensus 530 r~~i~~~g~i~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 608 (1890)
.+ ++.-++..-+. .+.++++--+.-+.-........+-+.+-+++.+.+|-.+....-+++ ++...
T Consensus 483 ~e------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~a-lAy~G------ 549 (929)
T KOG2062|consen 483 QE------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLA-LAYVG------ 549 (929)
T ss_pred HH------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHH-HHHhc------
Confidence 11 22333333332 234444433322222222222233334455666666665555444433 22222
Q ss_pred HHhhhhcchHHHHHHH-hcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh-cCCCHHHHHHHHHHHHHHH
Q 000184 609 REGSAANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIF 686 (1890)
Q Consensus 609 ~~~~~~~~~i~~Lv~l-L~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~ 686 (1890)
-.++++|..|+.. .++.++++|+.|..+|+-++...+ ..+|..|.+| .+.++.|+-.++.+|+--|
T Consensus 550 ---Tgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaC 617 (929)
T KOG2062|consen 550 ---TGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIAC 617 (929)
T ss_pred ---cCchhhHHHhhcccccccchHHHHHHHHHheeeEecCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhh
Confidence 2345668888887 678899999999999998887655 3467777777 6788999999999999888
Q ss_pred ccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--CchHHHHHHhcCcHHHHHHHHhcCCcc--hHHHH
Q 000184 687 LSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--DSEVSEKAIAEEIILPATRVLCEGTIS--GKTLA 762 (1890)
Q Consensus 687 ~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~--~~~~~~~~~~~~~v~~L~~ll~~~~~~--~~~~a 762 (1890)
++.. .+. ++..|-.+.+++..=||..|+.+++-++. .+..+.++ .++...+.+++.+...+ ++..|
T Consensus 618 AGtG--~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~aK~GA 687 (929)
T KOG2062|consen 618 AGTG--LKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGMAKFGA 687 (929)
T ss_pred cCCC--cHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHHHHHHH
Confidence 8763 222 35555667778888899999999998873 22222222 35556666666666655 34454
Q ss_pred H
Q 000184 763 A 763 (1890)
Q Consensus 763 a 763 (1890)
.
T Consensus 688 i 688 (929)
T KOG2062|consen 688 I 688 (929)
T ss_pred H
Confidence 3
No 123
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.18 Score=63.49 Aligned_cols=372 Identities=17% Similarity=0.165 Sum_probs=171.4
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhc-cCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhC---ChhhHH
Q 000184 1288 LVEILNTGLEREQHAAIAALVRLLS-ENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG---NTRIRS 1363 (1890)
Q Consensus 1288 Lv~lL~~~~~~~~~~A~~aL~~L~~-~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~---~~~~~~ 1363 (1890)
+-+-|..+++++|..|.+-+..+.. +++-.. .+..++++.--..+.+++..-.--|..+=. +.....
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~---------Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~ 95 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNGEDLPS---------LLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLH 95 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCCchH---------HHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHH
Confidence 5556888999999998876655543 332222 222233332212222344333333332211 111111
Q ss_pred HHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChh
Q 000184 1364 TVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS 1443 (1890)
Q Consensus 1364 ~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~ 1443 (1890)
++.- .....-+=|+.+++-+|-...+-|++| .+++..+. .++.+..-|++.+.-|||+|+.|+..+=....
T Consensus 96 EMIL--vcna~RkDLQHPNEyiRG~TLRFLckL-kE~ELlep-----l~p~IracleHrhsYVRrNAilaifsIyk~~~- 166 (948)
T KOG1058|consen 96 EMIL--VCNAYRKDLQHPNEYIRGSTLRFLCKL-KEPELLEP-----LMPSIRACLEHRHSYVRRNAILAIFSIYKNFE- 166 (948)
T ss_pred HHHH--HHHHHhhhccCchHhhcchhhhhhhhc-CcHHHhhh-----hHHHHHHHHhCcchhhhhhhheeehhHHhhhh-
Confidence 1110 112233345678888888888888877 34444333 36677788889999999999988876654410
Q ss_pred hHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhc-cCCC--------------
Q 000184 1444 CKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTR-SEFG-------------- 1508 (1890)
Q Consensus 1444 ~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~-~~~~-------------- 1508 (1890)
.+ =-.+-+.+-+.|..+.|.-|..-|... |..... .+++..|...... ++++
T Consensus 167 ---~L-~pDapeLi~~fL~~e~DpsCkRNAFi~--L~~~D~-------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv 233 (948)
T KOG1058|consen 167 ---HL-IPDAPELIESFLLTEQDPSCKRNAFLM--LFTTDP-------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKV 233 (948)
T ss_pred ---hh-cCChHHHHHHHHHhccCchhHHHHHHH--HHhcCH-------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHH
Confidence 00 011223344444444443333333222 221111 1112222222111 1222
Q ss_pred ----hhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc-ccccc---------c
Q 000184 1509 ----PDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE-EQLQK---------D 1574 (1890)
Q Consensus 1509 ----~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~-~~~~~---------~ 1574 (1890)
|..+..-++.|+|++....+...+ ...+. |+.+ +.+|..-..|+.++-.|... .+... +
T Consensus 234 ~~~~p~~~~~~i~~i~~lL~stssaV~f--Eaa~t---lv~l--S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~ 306 (948)
T KOG1058|consen 234 CLANPAEKARYIRCIYNLLSSTSSAVIF--EAAGT---LVTL--SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSE 306 (948)
T ss_pred HhcCHHHhhHHHHHHHHHHhcCCchhhh--hhcce---EEEc--cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHH
Confidence 333333344444443332211111 11111 0000 23333333444333333331 11110 1
Q ss_pred hh------ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhH-HHhhcChHHHHHHHhhc-------CCCCcHHHHH
Q 000184 1575 PV------TQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNE-IAKEGGVTELSKIILQA-------DPSLPHALWE 1640 (1890)
Q Consensus 1575 l~------~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~-l~~~g~I~~Ll~~l~~~-------~~~~~~~~~~ 1640 (1890)
+. =.|.+--.+++|.+.+-+++..++.....+..+..-. + +..|-+-+..+ +...|..+.+
T Consensus 307 l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvedi-----v~~Lkke~~kT~~~e~d~~~~yRqlLik 381 (948)
T KOG1058|consen 307 LKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDI-----VQFLKKEVMKTHNEESDDNGKYRQLLIK 381 (948)
T ss_pred HhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHH-----HHHHHHHHHhccccccccchHHHHHHHH
Confidence 11 1233345567778999999999999999988765321 2 22222222221 1122333333
Q ss_pred HHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHc
Q 000184 1641 SAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLR 1712 (1890)
Q Consensus 1641 ~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~ 1712 (1890)
.....-.++. -+....++.|++.+.+.++..-......+...-.-.|.-|. ..|+.|+.-+.
T Consensus 382 tih~cav~Fp-----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~-----~ii~~l~~~~~ 443 (948)
T KOG1058|consen 382 TIHACAVKFP-----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRA-----SIIEKLLETFP 443 (948)
T ss_pred HHHHHhhcCh-----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHH-----HHHHHHHHhhh
Confidence 1111111111 01123699999999999887666666555555444454444 34555555553
No 124
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=2.6 Score=57.87 Aligned_cols=514 Identities=15% Similarity=0.131 Sum_probs=253.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhH
Q 000184 109 PPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGF 188 (1890)
Q Consensus 109 ~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~ 188 (1890)
..+.++|..+|.-.+..|++-|.-+-.- .|.. .+.+.+..|++.+..+...... ++.+
T Consensus 864 ~aF~~~Lsd~dEf~QDvAsrGlglVYel--gd~~-----~k~~LV~sL~~tl~~Gkr~~~~-----------vs~e---- 921 (1702)
T KOG0915|consen 864 EAFSHLLSDNDEFSQDVASRGLGLVYEL--GDSS-----LKKSLVDSLVNTLTGGKRKAIK-----------VSEE---- 921 (1702)
T ss_pred HHHHHHhcccHHHHHHHHhcCceEEEec--CCch-----hHHHHHHHHHHHHhccccccce-----------eccc----
Confidence 6788888877777787777665433221 1111 2345566777776654332111 1111
Q ss_pred HHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhh
Q 000184 189 WAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSD 268 (1890)
Q Consensus 189 ~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~ 268 (1890)
..+.+.|.+- ++|+. -....-.-|++|+++-. +..-|-.++++-++.-.=..|.-||--+..++.
T Consensus 922 -TelFq~G~Lg------~Tp~G-g~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~ 986 (1702)
T KOG0915|consen 922 -TELFQEGTLG------KTPDG-GKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAK 986 (1702)
T ss_pred -hhcccCCcCC------CCCCC-CcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchhhcccchhhchHHHHH
Confidence 1244445331 12221 12223344556664332 233355667776664333456677777777776
Q ss_pred cCHHHHHHHHh--cCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCC-chhhhhhhccccCCCChhhhhhhH
Q 000184 269 HCKDARREIAG--SNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGL-SNVISSLGQSLESCSSPAQVADTL 345 (1890)
Q Consensus 269 ~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~-~~~i~~l~~~~~~~~~~~~~~~~~ 345 (1890)
.. +..+.. ..-||.|.+.=.+|+ ..+| +|+.-++|.-... +.++..
T Consensus 987 ~a---~~kl~p~l~kLIPrLyRY~yDP~---------~~Vq-~aM~sIW~~Li~D~k~~vd~------------------ 1035 (1702)
T KOG0915|consen 987 QA---GEKLEPYLKKLIPRLYRYQYDPD---------KKVQ-DAMTSIWNALITDSKKVVDE------------------ 1035 (1702)
T ss_pred HH---HHhhhhHHHHhhHHHhhhccCCc---------HHHH-HHHHHHHHHhccChHHHHHH------------------
Confidence 32 222221 234677777666654 3343 5677777744321 111111
Q ss_pred hHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCC--ChHHHHHHHHHHHHhhCCCcc---chhhhhcCcHHHHHHHh
Q 000184 346 GALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL--PFLVQERTIEALASLYGNPLL---SIKLENSEAKRLLVGLI 420 (1890)
Q Consensus 346 gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~--~~~~~~~a~~aL~~L~~~~~~---~~~l~~~g~i~~Lv~lL 420 (1890)
| +-+++-+++..-+ .+-+|+.++-+|..|.+.++. .+++. .....+...+
T Consensus 1036 ----y-------------------~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvm 1090 (1702)
T KOG0915|consen 1036 ----Y-------------------LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVM 1090 (1702)
T ss_pred ----H-------------------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHH
Confidence 1 1222333333222 234799999999999766543 33332 1223334444
Q ss_pred cCCCHHHHHH---HHHHHHHhhccCc-----hhhHHHHhcCcHHHHHH--hhCCCCHHHHHHHHHHHHHcccCChhcHHH
Q 000184 421 TMATNEVQEE---LVRALLKLCNNEG-----SLWRALQGREGIQLLIS--LLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1890)
Q Consensus 421 ~~~~~~v~~~---a~~aL~~L~~~~~-----~~~~~i~~~g~i~~Lv~--lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 490 (1890)
.+-...||+. ++.+|..+|..-. ...+.+.+ -.+|.|++ .+ +.-++++..+..++..|++.... .-.
T Consensus 1091 DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~-~lk 1167 (1702)
T KOG0915|consen 1091 DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGK-ELK 1167 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchh-hhc
Confidence 4434556654 4556666653211 11111111 23455544 22 56789999999999999964332 111
Q ss_pred HHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChHHHHHH--------------------HhCCCHHHHHHHhhcC
Q 000184 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACV--------------------ESADAVPALLWLLKNG 549 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~-~~~~r~~i--------------------~~~g~i~~Lv~ll~~~ 549 (1890)
-.-...||.|++....-.+.+--.-+.=+.|+-.. -+..|..+ +=...+|.+.++++.+
T Consensus 1168 P~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s 1247 (1702)
T KOG0915|consen 1168 PHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS 1247 (1702)
T ss_pred chhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 11233566666666554444332111111111110 00111111 0123678888888875
Q ss_pred -ChhHHHHHHHHHHHHhcCCC----C---CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHH
Q 000184 550 -SANGKEIAAKTLNHLIHKSD----T---ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETM 621 (1890)
Q Consensus 550 -~~~~~~~Aa~aL~~L~~~~~----~---~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L 621 (1890)
.-.+|-.++..+..|+..-. | .-+..+...+++.++.++.....|+|+|....+.+. .+.. +..+
T Consensus 1248 Vgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq-~qKL------ie~~ 1320 (1702)
T KOG0915|consen 1248 VGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQ-MQKL------IETL 1320 (1702)
T ss_pred CCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHH-HHHH------HHHH
Confidence 33456666666666654221 1 223444555677778888899999999988766544 2222 4444
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCC-HHHHHHHHHHHHHHHccCchhhHHHHHhC
Q 000184 622 IKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS-ECILVEASRCLAAIFLSVRENREVAAVAR 700 (1890)
Q Consensus 622 v~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~~~~~~~ 700 (1890)
+..+.-..+..+..+|..+.+++...++.-.. -+..|-||+-+-.... .+.+.--=.....++.+.. .+..+...
T Consensus 1321 l~~~l~k~es~~siscatis~Ian~s~e~Lkn--~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsgga--gtvrl~~~ 1396 (1702)
T KOG0915|consen 1321 LADLLGKDESLKSISCATISNIANYSQEMLKN--YASAILPLIFLAMHEEEKANQELWNDVWAELVSGGA--GTVRLYLL 1396 (1702)
T ss_pred HHHHhccCCCccchhHHHHHHHHHhhHHHHHh--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCc--chhhhhHH
Confidence 44333332333377777777777665543211 1234566665554333 2222111122222222221 11111223
Q ss_pred CChHHHHH-HhCCCCHHHHHHHHHHHHHHh
Q 000184 701 DALSPLVV-LAGSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 701 ~~v~~Lv~-ll~~~~~ev~~~aa~aL~nL~ 729 (1890)
..+-.++. .+.+....++..++.++.-++
T Consensus 1397 eiLn~iceni~nn~~w~lr~q~Akai~~~a 1426 (1702)
T KOG0915|consen 1397 EILNLICENITNNESWKLRKQAAKAIRVIA 1426 (1702)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHc
Confidence 33333443 333444778899998888776
No 125
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.49 E-value=0.01 Score=57.20 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhcc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHh
Q 000184 470 QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE--SGSAKAKEDSASILRNLCNHSEDIRACVES 535 (1890)
Q Consensus 470 ~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~ 535 (1890)
+...+.+|+||+..++.++..+.+.||+|.+++... ..+|-++|+|.+++.||+..+++++..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456788999999989999999999999999999865 448999999999999999999999988765
No 126
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.17 E-value=0.024 Score=65.42 Aligned_cols=186 Identities=17% Similarity=0.182 Sum_probs=114.8
Q ss_pred CCCCHHHHHHHHHHHHHcccCC--hhcHHHHHh--cCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCC
Q 000184 463 GLSSEQQQECSVALLCLLSNEN--DDSKWAITA--AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADA 538 (1890)
Q Consensus 463 ~~~~~~v~~~A~~aL~nL~~~~--~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~ 538 (1890)
.+.+.+.+..+..-|..+..++ ......+.+ ...+..++..+.+....+...|+.++..++......-... -...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 5678888999998888887655 222333322 1466777777777777888889999999986422211111 2347
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--CCc-HHHHHHHHhcCCcchHHHHHHHHHHHhhhcC-chHHHHHhhhh
Q 000184 539 VPALLWLLKNGSANGKEIAAKTLNHLIHKSD--TAT-ISQLTALLTSDLPESKVYVLDALKSMLSVVS-FSDILREGSAA 614 (1890)
Q Consensus 539 i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~--~~~-i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~~~~~~~ 614 (1890)
+|+|++.+.++...+++.|..+|..++.+.. +.. .+.+.....+.++.++..+...+..+....+ ....+.....-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 7999999999889999999999999998766 344 3445566778888999999988887766444 11111111101
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChh
Q 000184 615 NDAVETMIKILSSTKEETQAKSASALAGIFETRKD 649 (1890)
Q Consensus 615 ~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~ 649 (1890)
...++.+..++.++++++|..|-.++..+....++
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 33578888899999999999999999999776443
No 127
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.14 E-value=0.009 Score=47.68 Aligned_cols=39 Identities=38% Similarity=0.626 Sum_probs=36.2
Q ss_pred hhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000184 485 DDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLC 523 (1890)
Q Consensus 485 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~ 523 (1890)
++++..+.+.|++++|++++.++++++++.++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347888999999999999999999999999999999997
No 128
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=1.9 Score=59.08 Aligned_cols=337 Identities=14% Similarity=0.128 Sum_probs=170.2
Q ss_pred HHHHHhcCCcchhHHHHHHHHHH---hhcCHHHHHhhhhcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhh
Q 000184 1205 LTKYLSLGPQDATEEAATDLLGI---LFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESA 1281 (1890)
Q Consensus 1205 Lv~~L~~~~~~~q~~a~~~ll~~---l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~ 1281 (1890)
|...+.++.+..+...+-.++.. |..-+++... .......+.++|.+.+.-.+-.|++-|+-.-+..+ .-.+
T Consensus 823 l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~--~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd---~~~k 897 (1702)
T KOG0915|consen 823 LDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLM--LKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGD---SSLK 897 (1702)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhc--cHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCC---chhH
Confidence 34444444444444444444433 4444444322 22344677788888777788888777654333221 1122
Q ss_pred cCChHHHHHHhccCChHH----------------------HHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHh--
Q 000184 1282 RQAVQPLVEILNTGLERE----------------------QHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILS-- 1337 (1890)
Q Consensus 1282 ~~~i~~Lv~lL~~~~~~~----------------------~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~-- 1337 (1890)
.+-+..|+.-|..+.... +..--+=|-+|+. +.|--+..+++++
T Consensus 898 ~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------------dl~qPdLVYKFM~LA 965 (1702)
T KOG0915|consen 898 KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------------DLGQPDLVYKFMQLA 965 (1702)
T ss_pred HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------------hcCChHHHHHHHHHh
Confidence 334555666554432110 1111111222221 1222222333332
Q ss_pred -hcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHH
Q 000184 1338 -SNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLV 1416 (1890)
Q Consensus 1338 -~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~ 1416 (1890)
+.-.+.-+.-|+-=++.+.....-..+..-..-+|+|.+.=.+++..++......=..|..|+.....-+-+.+.+.|+
T Consensus 966 nh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL 1045 (1702)
T KOG0915|consen 966 NHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELL 1045 (1702)
T ss_pred hhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 2222233333443334443333222222223345555555568888888777555555556654444444566788888
Q ss_pred HhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHc-CcHHHHHHHhccCChhHHHHHHHHHHHHHhcccc---cCCcc-c
Q 000184 1417 GLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKA-GVIESVLDILHEAPDFLCSAFAELLRILTNNAGI---AKGPS-A 1491 (1890)
Q Consensus 1417 ~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~-~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~---~~~~~-~ 1491 (1890)
.-+.+.--+||++++.||..+-..+|... ...+. ..-..+.+.++|-.+.|+..+-.++..|+..... -.... .
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~-~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQ-VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 88888889999999999999998864332 11100 1222223333344455666554555544433221 11111 2
Q ss_pred cCChHHHHHHhhcc---CCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCC-HHHHHHHHHH
Q 000184 1492 AKVVEPLFLLLTRS---EFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPA-PAVQQLAAEL 1561 (1890)
Q Consensus 1492 ~~~v~~Li~lL~~~---~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~-~~vq~~A~~a 1561 (1890)
...+..++-.|-++ ..-+.+|+-++.++..++++......- ..+..|+.|+...+.-. ..+-..++++
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP--~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP--HFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc--hhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 22344444444332 223677788999999998775543332 45666888888877544 4445555555
No 129
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.95 Score=54.05 Aligned_cols=270 Identities=15% Similarity=0.131 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccc------hhh----HHHHhcCChH
Q 000184 40 EYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN------ELR----VKVLLGGCIP 109 (1890)
Q Consensus 40 e~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~------~~~----~~i~~~g~i~ 109 (1890)
...++.+-.++..++-.-.++ +..+|+.|+.+|.+.+.++.+.....|.+|...+ ++. ..+++++.++
T Consensus 102 hd~IQ~mhvlAt~PdLYp~lv--eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vla 179 (536)
T KOG2734|consen 102 HDIIQEMHVLATMPDLYPILV--ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA 179 (536)
T ss_pred HHHHHHHHhhhcChHHHHHHH--HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence 356667777777776443433 2589999999999999999999999999987433 122 2345668889
Q ss_pred HHHHhhcCCCH------HHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhcc
Q 000184 110 PLLGLLKSSSA------EGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLST 183 (1890)
Q Consensus 110 ~Lv~lL~~~~~------~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~ 183 (1890)
.|++-+..=|. +....+...+-|+.. . +..-....++.|.+.-|+.-++....-+.. ..++..+|.-+-.
T Consensus 180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~--~-r~~~~~~~~e~~ll~WLL~rl~~k~~f~aN-k~YasEiLaillq 255 (536)
T KOG2734|consen 180 LLVQNVERLDESVKEEADGVHNTLAVVENLVE--V-RPAICTEIVEQGLLSWLLKRLKGKAAFDAN-KQYASEILAILLQ 255 (536)
T ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHh--c-cHHHHHHHHHhhHHHHHHHHHhcccCcchh-HHHHHHHHHHHhc
Confidence 99888763222 233444455556555 1 222123355666666655545443222332 2345555655555
Q ss_pred CChhHHHHHHhcCCHHHHHHhhcC---C------CHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHh
Q 000184 184 STEGFWAATVQAGGIDILVKLLTL---G------QSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEAS 254 (1890)
Q Consensus 184 ~~~~~~~~i~~~g~v~~Lv~lL~~---~------~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 254 (1890)
+.++++..+-.-.|+..+++-+.- . ..+.-++...+|+.+. ....++..+....|+....-+++.. ..
T Consensus 256 ~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~l-m~~~nr~~Fl~~EGlqLm~Lmlr~K--k~ 332 (536)
T KOG2734|consen 256 NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLL-MAPANRERFLKGEGLQLMNLMLREK--KV 332 (536)
T ss_pred cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHh-cChhhhhhhhccccHHHHHHHHHHH--HH
Confidence 666677767788999999887752 1 2234456666664433 4455888998888887766666652 35
Q ss_pred HHHHHHHHHHHhhhcCH--HHHHHHHhcCChHHHHHhhc-CCCccccchhhhHHHHHHHHHHHHHhh
Q 000184 255 VRAEAAGALKSLSDHCK--DARREIAGSNGIPAMINATI-APSKEFMQGEYAQALQENAMCALANIS 318 (1890)
Q Consensus 255 ~~~~Aa~aL~~Ls~~~~--~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~~~~~l~e~a~~aL~nl~ 318 (1890)
.+-.+.++|-....+.+ .+...+++.+|+..+..+.- .|.+.+.......+..|+.+..|+.+-
T Consensus 333 sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~ 399 (536)
T KOG2734|consen 333 SRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLL 399 (536)
T ss_pred hhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHH
Confidence 78899999999988766 68889999999998887765 333434444445666777777666543
No 130
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.97 E-value=0.052 Score=62.73 Aligned_cols=185 Identities=17% Similarity=0.108 Sum_probs=113.7
Q ss_pred ccCChHHHHHHHHHHHHHhccC---chhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhC
Q 000184 1293 NTGLEREQHAAIAALVRLLSEN---PSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAAR 1369 (1890)
Q Consensus 1293 ~~~~~~~~~~A~~aL~~L~~~~---~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~ 1369 (1890)
.+.+-+.|..|+.-|..+..++ .....++..++ ..+..+...+.+. .-.+...|..++..++.............
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~-~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLR-QLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH----HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHH-HhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 3455577888999999998766 22232221112 3445566666554 23577888888888876654444444567
Q ss_pred chHHHHHHHccCChHHHHHHHHHHHhccCCch-HHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHH
Q 000184 1370 CVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQ-LAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEM 1448 (1890)
Q Consensus 1370 ~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~-~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l 1448 (1890)
.++.|+..+.++...++..|..+|..++..-. ....+ ...+...+++.++.+|..++..+..+....+.....+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 78999999999999999999999999984332 11211 4667778889999999999999888766654122222
Q ss_pred HH----cCcHHHHHHHhccCChhHHHHHHHHHHHHHhccc
Q 000184 1449 VK----AGVIESVLDILHEAPDFLCSAFAELLRILTNNAG 1484 (1890)
Q Consensus 1449 ~~----~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~ 1484 (1890)
.. ..+++.+.+.+.|.+++|+..+-.++..+.....
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 11 3477888899999999999999888887754433
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.92 E-value=0.0097 Score=51.17 Aligned_cols=55 Identities=22% Similarity=0.136 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000184 715 LEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 769 (1890)
Q Consensus 715 ~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L 769 (1890)
+.+|..|+++|+++........+....++++.|..+++++++.+|..|+|+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999886666666667899999999999999999999999999875
No 132
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.86 E-value=0.028 Score=54.25 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC--CCCHHHHHHHHHHHHHcccCChhcHHHHHhc
Q 000184 428 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG--LSSEQQQECSVALLCLLSNENDDSKWAITAA 494 (1890)
Q Consensus 428 ~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~ 494 (1890)
+...++.|.|+|..++..+..+++.||+|.+++.-. +.+|-+++.|.++++||+.++++++..|.+-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 556788999999999999999999999999999754 5689999999999999999999998888654
No 133
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.86 E-value=6.3 Score=51.95 Aligned_cols=368 Identities=17% Similarity=0.127 Sum_probs=192.7
Q ss_pred hccCChHHHHHHHHH-HHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCc
Q 000184 1292 LNTGLEREQHAAIAA-LVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARC 1370 (1890)
Q Consensus 1292 L~~~~~~~~~~A~~a-L~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~ 1370 (1890)
|.+.++..|..|++- +.++..|++-.. ..+.+++.... .+.++++..=-=|........ . ..--+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmss---------Lf~dViK~~~t-rd~ElKrL~ylYl~~yak~~P---~-~~lLa 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSS---------LFPDVIKNVAT-RDVELKRLLYLYLERYAKLKP---E-LALLA 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHH---------HHHHHHHHHHh-cCHHHHHHHHHHHHHHhccCH---H-HHHHH
Confidence 677777778877654 456665554222 33445555553 355666554333333322211 0 11234
Q ss_pred hHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHH
Q 000184 1371 VEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVK 1450 (1890)
Q Consensus 1371 i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~ 1450 (1890)
+..+.+=+.++++.+|..|.+.++.+- +++.. ..+++++.++++++++.||+.|+.|+.++=.-+ +....+
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~-~~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~ 164 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR-VKELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHE 164 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC-hHHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---Hhhhhc
Confidence 566677788999999999999999884 33333 345899999999999999999999999987443 345577
Q ss_pred cCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccC---CC---hhhHHHHHHHHHHhhc
Q 000184 1451 AGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSE---FG---PDGQHSALQVLVNILE 1524 (1890)
Q Consensus 1451 ~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~---~~---~~v~~~al~aL~nl~~ 1524 (1890)
.|.+..+..++.+.++.++..|-.++..+-.. ...+-.......+.+.+ +. .+++..-++.|..-..
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e-------~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~ 237 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE-------LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVP 237 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh-------hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCC
Confidence 88999999999998888776665555433221 11111222223333211 01 2233322333332211
Q ss_pred CCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 000184 1525 HPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALV 1604 (1890)
Q Consensus 1525 ~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~ 1604 (1890)
.... ........+.-.+.+.++.+-..++..+-.+.......+... -.-++|+.++..+ ++.....++-+.
T Consensus 238 ~~~~------s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~--~~~~~l~~Ll~~~-~~~~~~vl~~~~ 308 (757)
T COG5096 238 TTPD------SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFL--ISSPPLVTLLAKP-ESLIQYVLRRNI 308 (757)
T ss_pred CCCC------cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHHH--hhccHHHHHHcCC-HHHHHHHHHHhh
Confidence 1111 111223333444567778888888877777776433333111 1236777777665 555555555444
Q ss_pred HHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhcc--CChhHHHHHHH
Q 000184 1605 SIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRS--GSEGTVIGSLN 1682 (1890)
Q Consensus 1605 ~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~--~~~~v~~~a~~ 1682 (1890)
.+.......+.+. +..+. .+...+|-+. .+ + -.-.+.... ....+ .+.++.++..... -+++....+..
T Consensus 309 ~~~l~~~~k~~~~--~~~~f-~~~~~~~i~~-~l-e-k~~~~t~l~--~~~n~-~~~L~e~~~y~~~~~~~~e~v~~~ik 379 (757)
T COG5096 309 QIDLEVCSKLLDK--VKKLF-LIEYNDDIYI-KL-E-KLDQLTRLA--DDQNL-SQILLELIYYIAENHIDAEMVSEAIK 379 (757)
T ss_pred HHHHHhhHHHHHH--Hhhhh-hhhccchHHH-HH-H-HHHHHhhcC--Cchhh-HHHHHHHHHHHhhccccHHHHHHHHH
Confidence 4443322221111 01110 0111121000 00 0 000001110 00000 0145555555555 57777788888
Q ss_pred HHHHhhcCChhhHHHHHHcccHHHHHHHHc
Q 000184 1683 ALLVLESDDGTSAEAMAESGAIEALLELLR 1712 (1890)
Q Consensus 1683 aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~ 1712 (1890)
+|+.+..-.+. ...+.|..++.+++
T Consensus 380 ~lgd~~sk~~s-----~~~~~I~~~lel~~ 404 (757)
T COG5096 380 ALGDLASKAES-----SVNDCISELLELLE 404 (757)
T ss_pred HHHhhhhhhhh-----hHHHHHHHHHHhcc
Confidence 88877643211 12356677777776
No 134
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.70 E-value=0.02 Score=49.28 Aligned_cols=54 Identities=20% Similarity=0.181 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHh
Q 000184 1383 SPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKL 1437 (1890)
Q Consensus 1383 ~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l 1437 (1890)
+.+|..|+.+|++++ ..+..... ....+++.|..+|+++++.||.+|+.||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988 33333332 3567799999999999999999999999875
No 135
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.65 E-value=0.024 Score=45.15 Aligned_cols=40 Identities=30% Similarity=0.343 Sum_probs=36.2
Q ss_pred hHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000184 527 EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 566 (1890)
Q Consensus 527 ~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 566 (1890)
++++..+.+.|++++|+++++++++++++.++++|+|++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3578889999999999999999999999999999999863
No 136
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.79 Score=58.07 Aligned_cols=339 Identities=14% Similarity=0.134 Sum_probs=189.7
Q ss_pred HhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHH
Q 000184 1251 LRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVD 1330 (1890)
Q Consensus 1251 L~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~ 1330 (1890)
|..++.-+|-...+=|..|-+. ..-..-.|.+-+.|......+|..|..|++.+-... .. + =..+-+
T Consensus 108 LQHPNEyiRG~TLRFLckLkE~------ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~-L----~pDape 174 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKEP------ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EH-L----IPDAPE 174 (948)
T ss_pred ccCchHhhcchhhhhhhhcCcH------HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hh-h----cCChHH
Confidence 4445555665554444443221 112334566777788888899999999988887631 11 1 124556
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHH---ccCChHHHHHHHHHHHhcc-CCchHHHHH
Q 000184 1331 VLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLL---VTEFSPAQHSVVRALDKLV-DDEQLAELV 1406 (1890)
Q Consensus 1331 ~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL---~~~~~~~~~~a~~aL~~L~-~~~~~~~~~ 1406 (1890)
.+..+|..+.+...+++|--.|... +++ .++..|.... .+=++..+.-.++-+++.| .++..+.
T Consensus 175 Li~~fL~~e~DpsCkRNAFi~L~~~--D~E--------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-- 242 (948)
T KOG1058|consen 175 LIESFLLTEQDPSCKRNAFLMLFTT--DPE--------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-- 242 (948)
T ss_pred HHHHHHHhccCchhHHHHHHHHHhc--CHH--------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh--
Confidence 6677787666777888876655432 222 1222222211 1223445555566666666 3443333
Q ss_pred HHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChh-HHHHHHHHHHHHHhcccc
Q 000184 1407 AAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDF-LCSAFAELLRILTNNAGI 1485 (1890)
Q Consensus 1407 ~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~-v~~~aa~~l~~L~~~~~~ 1485 (1890)
..++.+..+|++.++.++-.|.++|..++.+ |..-.. +...+++++.+++|. +....-.-+..+....
T Consensus 243 ---~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~-- 311 (948)
T KOG1058|consen 243 ---RYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKALH-- 311 (948)
T ss_pred ---HHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhh--
Confidence 3478899999988999999999999888877 333222 345666666554432 2222222222222111
Q ss_pred cCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccC-----------CCCHHH
Q 000184 1486 AKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD-----------SPAPAV 1554 (1890)
Q Consensus 1486 ~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~-----------s~~~~v 1554 (1890)
..+-.+.+--.++.|+.+| -++++.++.....| .....+.-++.+|+ ++...-
T Consensus 312 --~~il~~l~mDvLrvLss~d--ldvr~Ktldi~ldL------------vssrNvediv~~Lkke~~kT~~~e~d~~~~y 375 (948)
T KOG1058|consen 312 --EKILQGLIMDVLRVLSSPD--LDVRSKTLDIALDL------------VSSRNVEDIVQFLKKEVMKTHNEESDDNGKY 375 (948)
T ss_pred --HHHHHHHHHHHHHHcCccc--ccHHHHHHHHHHhh------------hhhccHHHHHHHHHHHHHhccccccccchHH
Confidence 0111233445667888888 89999999888777 34444555555552 234456
Q ss_pred HHHHHHHHHHhhc-ccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhc-CC
Q 000184 1555 QQLAAELLSHLLL-EEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQA-DP 1632 (1890)
Q Consensus 1555 q~~A~~aL~~l~~-~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~-~~ 1632 (1890)
|+.-.+++..++. .++. ...+|+.|+.++.+.++..-...+.-+...-...|+- +...|..|++.+..- .
T Consensus 376 RqlLiktih~cav~Fp~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L--r~~ii~~l~~~~~~irS- 447 (948)
T KOG1058|consen 376 RQLLIKTIHACAVKFPEV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL--RASIIEKLLETFPQIRS- 447 (948)
T ss_pred HHHHHHHHHHHhhcChHH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH--HHHHHHHHHHhhhhhcc-
Confidence 8888888888876 2222 2467899999998887754433333333333222221 122345555544431 1
Q ss_pred CCcHHHHHHHHHHHHhhhhh
Q 000184 1633 SLPHALWESAASVLSSILQF 1652 (1890)
Q Consensus 1633 ~~~~~~~~~a~~~l~~~~~~ 1652 (1890)
..+++.++|.++....+
T Consensus 448 ---~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 448 ---SKICRGALWILGEYCEG 464 (948)
T ss_pred ---cccchhHHHHHHHHHhh
Confidence 12344466666555433
No 137
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.31 E-value=5.6 Score=50.38 Aligned_cols=348 Identities=15% Similarity=0.125 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhh-----HHHHhcCcHHHH
Q 000184 385 LVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLW-----RALQGREGIQLL 458 (1890)
Q Consensus 385 ~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~-----~~i~~~g~i~~L 458 (1890)
.-.++.+.+|+.++.++..-..+.- ..+..+-...+ ..+.+.-...+.+|.++........ ....+...++.+
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l 95 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRL 95 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHH
Confidence 3478888999999888775444431 12222222222 1245666677777777654433222 122222356777
Q ss_pred HHhhCCC-------CHHHHHHHHHHHHHcccCChh-cHHHHHhcCCcHHHHHhcc----------CCC--HHHHHHHHHH
Q 000184 459 ISLLGLS-------SEQQQECSVALLCLLSNENDD-SKWAITAAGGIPPLVQILE----------SGS--AKAKEDSASI 518 (1890)
Q Consensus 459 v~lL~~~-------~~~v~~~A~~aL~nL~~~~~~-~~~~i~~~g~i~~Lv~lL~----------~~~--~~~~e~a~~a 518 (1890)
.++.-.. ++.+...+...+..+...-+. .++.+. ..+..++- ..+ ...+......
T Consensus 96 ~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (415)
T PF12460_consen 96 FELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVIL 170 (415)
T ss_pred HHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCCCccccccccccccHHHH
Confidence 7765321 244455555555555543333 333332 23333322 111 1122222222
Q ss_pred HHHHh-cCChHHHHHHHhCCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCC-CCcHHHHHHHH-----hcCCcchHHH
Q 000184 519 LRNLC-NHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSD-TATISQLTALL-----TSDLPESKVY 590 (1890)
Q Consensus 519 L~~L~-~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~-~~~i~~L~~lL-----~~~~~~~~~~ 590 (1890)
+..+- .-.+++.-. -....+..++.+..+. ++..+..+++.++-+...-. ...+..++..+ ....+..+..
T Consensus 171 ~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 249 (415)
T PF12460_consen 171 FSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQ 249 (415)
T ss_pred HHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHH
Confidence 22222 111121100 0112566777776554 46788888898888887632 22333333332 1223334444
Q ss_pred HHHHHHHHhh---hcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHH--------HHHH----
Q 000184 591 VLDALKSMLS---VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR--------ESSI---- 655 (1890)
Q Consensus 591 a~~aL~~L~~---~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~--------~~~~---- 655 (1890)
+.+.+.-++. +.+.+. ....+..|++++.+ +++...++.++.-+..+.++.. ..+.
T Consensus 250 ~~~~~~Wi~KaLv~R~~~~-------~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~ 320 (415)
T PF12460_consen 250 ALEILIWITKALVMRGHPL-------ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF 320 (415)
T ss_pred HHHHHHHHHHHHHHcCCch-------HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence 4444433322 112221 12236677777766 7788999999999988744321 1111
Q ss_pred HcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHH
Q 000184 656 AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVS 735 (1890)
Q Consensus 656 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~ 735 (1890)
-...+|.|++..+..+...+..-..+|..+..+.|...-. -.-...+|.|++-|..++.+++..+..+|..++.+.+..
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~ 399 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPEL 399 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHH
Confidence 2235889998888777777888888999998887643222 122457888889999999999999999999998655332
Q ss_pred HHHHhcCcHHHHHH
Q 000184 736 EKAIAEEIILPATR 749 (1890)
Q Consensus 736 ~~~~~~~~v~~L~~ 749 (1890)
..---..+++.|++
T Consensus 400 i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 400 ISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHh
Confidence 22222344444443
No 138
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.28 E-value=7.2 Score=49.42 Aligned_cols=345 Identities=18% Similarity=0.202 Sum_probs=182.9
Q ss_pred HHHHHHHhhcCCh--hhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHcc-CChHHHHHHHHHHHhcc----CCc--
Q 000184 1330 DVLCRILSSNCSM--ELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVT-EFSPAQHSVVRALDKLV----DDE-- 1400 (1890)
Q Consensus 1330 ~~L~~lL~~~~~~--~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~~~~~a~~aL~~L~----~~~-- 1400 (1890)
|.|...|.+..+. ...+....++..++.++..-..+.. ..+..|-..... .+.+.....+..|.++. .+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 4566666554332 4556677888888888776544433 333333333322 24455566667777776 111
Q ss_pred hHHHHHHHcCChHHHHHhhcCC-----c--HhHHHHHHHHHHHhccCC-hhhHHHHHHcCcHHHHHHHhc----------
Q 000184 1401 QLAELVAAHGAVIPLVGLLYGR-----N--YMLHEAISRALVKLGKDR-PSCKLEMVKAGVIESVLDILH---------- 1462 (1890)
Q Consensus 1401 ~~~~~~~~~gav~~L~~lL~~~-----~--~~vr~~A~~aL~~l~~~~-~~~~~~l~~~~~i~~L~~lL~---------- 1462 (1890)
.......+...++.+.++.... + +.+-..+...+..+...- ++.... .++.+..+..
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~-----~~~~~~~lf~~~~~~~~~~~ 155 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE-----ILDELYSLFLSPKSFSPFQP 155 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH-----HHHHHHHHHccccccCCCCc
Confidence 1222222334677777666421 1 233333333333332221 222222 3445555443
Q ss_pred cCC---hhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCc
Q 000184 1463 EAP---DFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQA 1539 (1890)
Q Consensus 1463 ~~~---~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~ 1539 (1890)
... +.......-..+.++....+...+.....++.++.+..+.+ .+..+..+++.++-+.+....... -...
T Consensus 156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~-~~~~~~~~~~~la~LvNK~~~~~~----l~~~ 230 (415)
T PF12460_consen 156 SSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSE-DEFSRLAALQLLASLVNKWPDDDD----LDEF 230 (415)
T ss_pred cccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCChhh----HHHH
Confidence 111 01111222222334555554444333346777777766544 277888889988888655221111 1122
Q ss_pred hhhhhhcc-CCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh------
Q 000184 1540 IEPLIPLL-DSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN------ 1612 (1890)
Q Consensus 1540 i~~Lv~lL-~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~------ 1612 (1890)
+..+...+ ....+..+..+.+++.-++.---.|..-.....++.|+.++.+ +++...|+++++-+..+.+.
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~ 308 (415)
T PF12460_consen 231 LDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKEN 308 (415)
T ss_pred HHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccc
Confidence 33333333 3445556666666666555422223333334456778888877 88899999999988765222
Q ss_pred ----H-HHhhc----ChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhh-chh-hhcc--cchHHHHHhhccCChhHHHH
Q 000184 1613 ----E-IAKEG----GVTELSKIILQADPSLPHALWESAASVLSSILQF-SSE-FYLE--VPVAVLVRLLRSGSEGTVIG 1679 (1890)
Q Consensus 1613 ----~-l~~~g----~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~-~~~-~~~~--~~v~~Lv~ll~~~~~~v~~~ 1679 (1890)
+ +++.- .++.|++-....++..+..... +++++.++ ... +..+ .-+|.|++.|+..|.+++.+
T Consensus 309 ~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~----ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s 384 (415)
T PF12460_consen 309 HANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT----ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLS 384 (415)
T ss_pred cchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH----HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 1 22322 3455555555555444444444 33333322 222 3333 35899999999999999999
Q ss_pred HHHHHHHhhcCC
Q 000184 1680 SLNALLVLESDD 1691 (1890)
Q Consensus 1680 a~~aL~~L~~~~ 1691 (1890)
+...|..+....
T Consensus 385 ~L~tL~~~l~~~ 396 (415)
T PF12460_consen 385 SLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHcC
Confidence 999999988765
No 139
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.26 E-value=5.7 Score=52.33 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=107.8
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHH
Q 000184 1285 VQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRST 1364 (1890)
Q Consensus 1285 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~ 1364 (1890)
++.+++...+.+.+.|+-.-.-|.+.+..++....+ ++..+.+=+.+ +++.++..|.+.++.+= ..
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-------avNti~kDl~d-~N~~iR~~AlR~ls~l~------~~ 122 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-------AVNTIQKDLQD-PNEEIRGFALRTLSLLR------VK 122 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-------HHHHHHhhccC-CCHHHHHHHHHHHHhcC------hH
Confidence 577888888888888888777788888876644433 56666666766 47789999999988761 22
Q ss_pred HHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccC
Q 000184 1365 VAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1440 (1890)
Q Consensus 1365 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 1440 (1890)
-.-...++++.+.+.++++.+|..|+-++.++. -|++. ..+.|.+..+..++.+.++.+.++|+.+|..+-..
T Consensus 123 el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 123 ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 223456788899999999999999999999998 45443 33678889999999999999999999999877654
No 140
>PRK09169 hypothetical protein; Validated
Probab=95.26 E-value=27 Score=51.14 Aligned_cols=85 Identities=19% Similarity=0.128 Sum_probs=50.7
Q ss_pred CccccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCccchhHHHhcCcHHHHHHHHhcCCcch-hHHHHHHHHHHhh
Q 000184 1151 GATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDA-TEEAATDLLGILF 1229 (1890)
Q Consensus 1151 ~~~~~~~i~~Lv~~L~~~~~~~~~~~~A~~~L~~la~~~~~~r~~i~eag~l~~Lv~~L~~~~~~~-q~~a~~~ll~~l~ 1229 (1890)
.......+..+++-+++-|+.......+.++-..++. ++..+ .-++.-.+..+++.|+.-+... ...++..+-+.|.
T Consensus 158 ~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~-~~~l~-~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~ 235 (2316)
T PRK09169 158 EALDAISFALLLNALSKWPDNTDCQTAAEQLADRLAS-DSRLL-QAMDAQEVANALNALSKWPDSPRCRNAAERLAERLA 235 (2316)
T ss_pred hhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhcc-CHHHH-HhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 3445677788899998877766555555555555554 33222 2344556777888888765443 3334455555566
Q ss_pred cCHHHHHh
Q 000184 1230 SSAEIRRH 1237 (1890)
Q Consensus 1230 ~~~~~~~~ 1237 (1890)
.++..+..
T Consensus 236 ~~~~l~~~ 243 (2316)
T PRK09169 236 DEPGLLQS 243 (2316)
T ss_pred cChHHHHh
Confidence 66666543
No 141
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.98 E-value=0.63 Score=53.07 Aligned_cols=247 Identities=15% Similarity=0.077 Sum_probs=150.7
Q ss_pred hhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcC-CcHHHHHhccCC--CHHHHHHHHHHHHHHhcCChHHHHHHHh-C
Q 000184 461 LLGLSSEQQQECSVALLCLLSNENDDSKWAITAAG-GIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVES-A 536 (1890)
Q Consensus 461 lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g-~i~~Lv~lL~~~--~~~~~e~a~~aL~~L~~~~~~~r~~i~~-~ 536 (1890)
+++.-++-.+.-|+.+|.++.- .++.|..+-.++ .-..++.++++. ..++|-+..-+++-++. ++.+.+.|-+ .
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 3334445578889999999984 677776665443 445677777764 57889999999999987 4666654433 4
Q ss_pred CCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhc-CchHHHHHhhhh
Q 000184 537 DAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVV-SFSDILREGSAA 614 (1890)
Q Consensus 537 g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~~~~ 614 (1890)
..+.-|+++.+.. ..++-+.+..++.|++.....+.|.+++.+ ++ +..|...|.... +..++.+.
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~--------~~k~vq~L~erkysDEel~~d---- 301 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-ND--------ISKCVQVLLERKYSDEELVID---- 301 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhh-cc--------hHHHHHHHHhcCCChHHHHHH----
Confidence 5677788888764 356778888999999875544444432211 11 122222222211 11111111
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHH--HHH-----HHhhcCh--------hHHHHHHHc--CchHHHHHhhcCCCHH-HHH
Q 000184 615 NDAVETMIKILSSTKEETQAKSAS--ALA-----GIFETRK--------DLRESSIAV--KTLWSVMKLLDVGSEC-ILV 676 (1890)
Q Consensus 615 ~~~i~~Lv~lL~s~~~~~~~~A~~--aL~-----~L~~~~~--------~~~~~~~~~--g~i~~Lv~lL~~~~~~-v~~ 676 (1890)
+..+-+-|.....+ -+.. -+. .+++++. ++.+.+... ..+..|..+++...+. ...
T Consensus 302 ---i~~i~s~l~~~~k~---l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~ 375 (432)
T COG5231 302 ---IERIRSRLVQNTKK---LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWIC 375 (432)
T ss_pred ---HHHHHHHHHhhhhh---hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEe
Confidence 22222222221111 1110 111 2233221 223333333 3588899999877766 344
Q ss_pred HHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000184 677 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 677 ~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~ 729 (1890)
-|+.-+..+.+.-|+.+.. +...|+-+.+..++.+++++|+-+|..|+..++
T Consensus 376 vAc~Di~~~Vr~~PE~~~v-l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 376 VACSDIFQLVRASPEINAV-LSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred eeHhhHHHHHHhCchHHHH-HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 5777788888877755555 888999999999999999999999999987665
No 142
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.97 E-value=0.66 Score=61.80 Aligned_cols=289 Identities=17% Similarity=0.140 Sum_probs=177.7
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHccc---CChhcHH
Q 000184 414 RLLVGLITM-ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN---ENDDSKW 489 (1890)
Q Consensus 414 ~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~---~~~~~~~ 489 (1890)
+.+...++. .....+..|++.|..++..-.+ ...-...+|.++.++.++..++|..|..+|+.+-. ..+..-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 444444432 3557788899999888865322 12122578999999999999999999988876542 2222222
Q ss_pred HHHhcCCcHHHHHhccCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChh----H-HHHHHHHHHH
Q 000184 490 AITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN----G-KEIAAKTLNH 563 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~~-~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~----~-~~~Aa~aL~~ 563 (1890)
.+.-.=..|.|-.++.+. ...+|-.-+..|..|+.. .+|-. +.+--.....++.+.+.+ . ...-..+|.
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t--A~rFl--e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~- 576 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT--AYRFL--ELTQELRQAGMLNDPNSETAPEQNYNTELQALH- 576 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH--HHHHH--HHHHHHHhcccccCcccccccccccchHHHHHH-
Confidence 333334788888888884 444554445666666641 22211 111000111111211110 0 011112221
Q ss_pred HhcCCCCCcHHH-HHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000184 564 LIHKSDTATISQ-LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 642 (1890)
Q Consensus 564 L~~~~~~~~i~~-L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~ 642 (1890)
.++++ ...++.+..+-+|..-.+.++-|+....... .+.-.++.|+.+|++.+..+|.+--..+..
T Consensus 577 -------~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k------sND~iLshLiTfLNDkDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 577 -------HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK------SNDVILSHLITFLNDKDWRLRGAFFDSIVG 643 (1431)
T ss_pred -------HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc------cccchHHHHHHHhcCccHHHHHHHHhhccc
Confidence 23444 3455666666788888888887776543211 122348999999999999998887777776
Q ss_pred HhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHH
Q 000184 643 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQAT 722 (1890)
Q Consensus 643 L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa 722 (1890)
++---.. .-+..+.+|.|...|.++.+.|...|++++..|+... ...+..+ .+.++....+|-+|+.-+|..++
T Consensus 644 vsi~VG~---rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 644 VSIFVGW---RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-LLRKPAV--KDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred eEEEEee---eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-ccchHHH--HHHHHhhhhheeCchHHHHHHHH
Confidence 6543111 1245678999999999999999999999999997543 1233322 23455666788899999999999
Q ss_pred HHHHHHh
Q 000184 723 CALANLI 729 (1890)
Q Consensus 723 ~aL~nL~ 729 (1890)
..+..+.
T Consensus 718 ~iI~~~~ 724 (1431)
T KOG1240|consen 718 GIIAAIA 724 (1431)
T ss_pred HHHHHHH
Confidence 8888775
No 143
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.80 E-value=0.21 Score=64.04 Aligned_cols=237 Identities=15% Similarity=0.082 Sum_probs=159.7
Q ss_pred hHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHH-HcccCChhcHHHHHhcCCcHHHHHhccCCC-HHHHHHHHHHHHHHh
Q 000184 446 WRALQGREGIQLLISLLGLSSEQQQECSVALLC-LLSNENDDSKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLC 523 (1890)
Q Consensus 446 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~-nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~e~a~~aL~~L~ 523 (1890)
+...++.||...|..+.....++.+.....+|. .+. .+..+ ....++++.+.++... ..-.-.++.++.||+
T Consensus 497 ~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~--f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKID--FPGER----SYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred cCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcC--CCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 345667899999999998888888888888888 222 12111 1235666666665442 222346899999999
Q ss_pred cCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcC
Q 000184 524 NHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVS 603 (1890)
Q Consensus 524 ~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~ 603 (1890)
..++..|..+.+.-+++.+-.++...++-.++.++..+.||..++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~---------------------------------- 616 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL---------------------------------- 616 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH----------------------------------
Confidence 9988899999998888887778888888899999999999865321
Q ss_pred chHHHHHh-hhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHH-HHHHcCchHHHHHhhcCCCHHHHHHHHHH
Q 000184 604 FSDILREG-SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRE-SSIAVKTLWSVMKLLDVGSECILVEASRC 681 (1890)
Q Consensus 604 ~~~~~~~~-~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~a~~a 681 (1890)
.+.+. +.-..+++....++....+....+++.++..++......|. ..........++.++.+++..++...+..
T Consensus 617 ---~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~ 693 (748)
T KOG4151|consen 617 ---LYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVI 693 (748)
T ss_pred ---HHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhh
Confidence 11122 22255677777777778888999999998877776666665 45556678888999999999999999999
Q ss_pred HHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000184 682 LAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 726 (1890)
Q Consensus 682 L~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~ 726 (1890)
+.++.....+.... +.....++.+..+-+-.....++.++..|.
T Consensus 694 ~ln~~~~~~ei~~~-~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 694 ILNLFEALFEIAEK-IFETEVMELLSGLQKLNRAPKREDAAPCLS 737 (748)
T ss_pred hhhHHHHHHHHHHH-hccchHHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 99975432211111 334444444443322233334444444443
No 144
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.79 E-value=1.8 Score=51.93 Aligned_cols=205 Identities=17% Similarity=0.163 Sum_probs=121.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh--cCcHHHHHHhhCCCCHHHHHHHHHHHHHcccC--ChhcHHHH
Q 000184 416 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG--REGIQLLISLLGLSSEQQQECSVALLCLLSNE--NDDSKWAI 491 (1890)
Q Consensus 416 Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~--~~~~~~~i 491 (1890)
.+..+.......|+.++..+.++...+.. ...+.+ ...+..+.+.++.+..+-+..|+.++.-++-. ..+....+
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 44555666788999999999987765432 222322 22467888888888776677777777776542 22444555
Q ss_pred HhcCCcHHHHHhccCCC--HHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000184 492 TAAGGIPPLVQILESGS--AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 492 ~~~g~i~~Lv~lL~~~~--~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~ 569 (1890)
.+ ...|.|.+.+.+++ .+.|..|+.+|+-++..... +...+..+++.| ..+|.+.....
T Consensus 127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~------d~~~~~~~~~~l------------e~if~~~~~~~ 187 (309)
T PF05004_consen 127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGS------DEEETEELMESL------------ESIFLLSILKS 187 (309)
T ss_pred HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC------ChhHHHHHHHHH------------HHHHHHHhcCc
Confidence 54 37788888888764 45666676677666542100 011222222222 22333322111
Q ss_pred CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 000184 570 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1890)
Q Consensus 570 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~ 646 (1890)
.+..+. +-..+++.+...|+.+.+-|++..+...+. ... ...+|.|..+|.+++..+|..|..+|+-|...
T Consensus 188 ~~~~~~---~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 188 DGNAPV---VAAEDDAALVAAALSAWALLLTTLPDSKLE-DLL--EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred CCCccc---ccCCCccHHHHHHHHHHHHHHhcCCHHHHH-HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 111000 001233456677888888777655543322 222 34599999999999999999999999877654
No 145
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.79 E-value=0.35 Score=57.76 Aligned_cols=297 Identities=14% Similarity=0.124 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcC-----ChHHHHHHHhCCCHHHH
Q 000184 468 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-----SEDIRACVESADAVPAL 542 (1890)
Q Consensus 468 ~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~-----~~~~r~~i~~~g~i~~L 542 (1890)
.++.++..+|..++.+..-.+..+++ ....+..-+.+..+.++++++..+..+... .|+.-+.-...|.....
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 45555666666665432222222222 222333344566788888888888877642 11111100011111100
Q ss_pred ------HH-HhhcCChhHHHHHHHHHHHHhcCCC----CCcHHH-HHHHHhcCCcc---hHHHHHHHHHHHhhhcCchHH
Q 000184 543 ------LW-LLKNGSANGKEIAAKTLNHLIHKSD----TATISQ-LTALLTSDLPE---SKVYVLDALKSMLSVVSFSDI 607 (1890)
Q Consensus 543 ------v~-ll~~~~~~~~~~Aa~aL~~L~~~~~----~~~i~~-L~~lL~~~~~~---~~~~a~~aL~~L~~~~~~~~~ 607 (1890)
-. .-.+..+..+..++.++.++...+- ++.-.+ +..+...++.+ ++..|+++++ -..-++..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~---VyVLHp~l 424 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALG---VYVLHPCL 424 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhce---eEEeccch
Confidence 01 1112234466677888888764321 111122 22233223222 3334444443 21111111
Q ss_pred HHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc----Chh---HHHHHHHcCchHHHHHhh---cCCCHHHHHH
Q 000184 608 LREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET----RKD---LRESSIAVKTLWSVMKLL---DVGSECILVE 677 (1890)
Q Consensus 608 ~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~----~~~---~~~~~~~~g~i~~Lv~lL---~~~~~~v~~~ 677 (1890)
.+.......+...+...+.+..-..|.+++|++++++.- -+. ..+.+. .-.+..+..+- .-....+...
T Consensus 425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~n 503 (728)
T KOG4535|consen 425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSN 503 (728)
T ss_pred hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhH
Confidence 111222233455555666666778899999999999853 111 111111 11122222222 2344567888
Q ss_pred HHHHHHHHHccCchhhH--HHHHhCCChHHHH-HHhCCCCHHHHHHHHHHHHHHhcCchH--HHHHHhcCcHHHHHHHHh
Q 000184 678 ASRCLAAIFLSVRENRE--VAAVARDALSPLV-VLAGSPVLEVAEQATCALANLILDSEV--SEKAIAEEIILPATRVLC 752 (1890)
Q Consensus 678 a~~aL~~L~~~~~~~~~--~~~~~~~~v~~Lv-~ll~~~~~ev~~~aa~aL~nL~~~~~~--~~~~~~~~~v~~L~~ll~ 752 (1890)
+.++|+|+..--....+ ......+.+..+. .......-.||-+++.+++||+.++.. +..-+...+.+.|..++.
T Consensus 504 avraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~ 583 (728)
T KOG4535|consen 504 AVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVT 583 (728)
T ss_pred HHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHH
Confidence 88888888532110000 1111222233332 222334566999999999999977654 333356788999999998
Q ss_pred cCCcc-hHHHHHHHHHHHh
Q 000184 753 EGTIS-GKTLAAAAIARLL 770 (1890)
Q Consensus 753 ~~~~~-~~~~aa~aL~~L~ 770 (1890)
++.+- +|.+|+.+|..-.
T Consensus 584 ~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 584 SCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred HhccceEeehhhhhhcCCC
Confidence 88764 9999999886543
No 146
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.74 E-value=25 Score=47.95 Aligned_cols=179 Identities=15% Similarity=0.093 Sum_probs=135.9
Q ss_pred hHHHHHHHhc----CCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhc-CCCHHHHHHHHHHHHHHHccCch
Q 000184 617 AVETMIKILS----STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCLAAIFLSVRE 691 (1890)
Q Consensus 617 ~i~~Lv~lL~----s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~ 691 (1890)
-.|.+++..+ .++|++|.+|.-+|+.+..-+..+|+ ...|.|+..+. ++++.++-.+.-+++-++...|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 3567777774 35899999999999999987777765 57899999995 88898988888888888766542
Q ss_pred hhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 000184 692 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLH 771 (1890)
Q Consensus 692 ~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~ 771 (1890)
. -.-+.+.|..-|++++..||+.|..+|.+|....-.+ --|.+.....++.+++..++.-|-.=...|..
T Consensus 995 l------ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 L------IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred c------cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 2 2458889999999999999999999999998654333 25777888889999988887766555555554
Q ss_pred cCccchhHhhhhhhhccHHHHHHHhhccC--cccchHHHHHHHHHHHhcCC
Q 000184 772 SRKIDYTITDCVNRAGTVLALVSFLESAS--GSVATSEALDALAILSRSGG 820 (1890)
Q Consensus 772 ~~~~~~~~~~~~~~~g~l~~li~~l~~~~--~~v~~~~al~~L~~l~~~~~ 820 (1890)
.+.+-+ ..+|.++..|+++. .+.. ...+..|..+.+..+
T Consensus 1065 k~n~iy---------nlLPdil~~Ls~~~l~~~~~-~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1065 KGNTIY---------NLLPDILSRLSNGNLEEESY-KTVMEFLIGLIKKDE 1105 (1251)
T ss_pred cccchh---------hhchHHHHhhccCcccchhh-HHHHHHHHHHhcccc
Confidence 432222 67888899888876 4444 677777777776553
No 147
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.32 E-value=1.4 Score=50.30 Aligned_cols=255 Identities=14% Similarity=0.076 Sum_probs=152.4
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCcHHHHHHhhCCC--CHHHHHHHHHHHHHcccCChhcHHHHHh-c
Q 000184 419 LITMATNEVQEELVRALLKLCNNEGSLWRALQG-REGIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKWAITA-A 494 (1890)
Q Consensus 419 lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~i~~-~ 494 (1890)
+++.-++-++.-|++|+.++... ++++..+-. .-.-..++++++.. +.++|++..-+++.++- +++..+.+-+ -
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 34444566788899999998876 455554433 33457788888764 57899999999999984 5655543332 3
Q ss_pred CCcHHHHHhccCC-CHHHHHHHHHHHHHHhcCCh-HHHHHHHhCCCHHHHHHHhhcC---ChhHHHHHHHHHHHHhcCCC
Q 000184 495 GGIPPLVQILESG-SAKAKEDSASILRNLCNHSE-DIRACVESADAVPALLWLLKNG---SANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 495 g~i~~Lv~lL~~~-~~~~~e~a~~aL~~L~~~~~-~~r~~i~~~g~i~~Lv~ll~~~---~~~~~~~Aa~aL~~L~~~~~ 569 (1890)
..+..|+++.+.. .+++-+-|+.++.|++...+ ..-....-.|-+.+-++.|..+ +.+.+..--..=..|.....
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 4667777777655 56677789999999997432 1112222345455666666553 22332222211111111110
Q ss_pred C-CcHHH-HHHH----HhcCCcchHHHHHHHHHHHhhhcCchHHHHHh-hhhcchHHHHHHHhcCCCHH-HHHHHHHHHH
Q 000184 570 T-ATISQ-LTAL----LTSDLPESKVYVLDALKSMLSVVSFSDILREG-SAANDAVETMIKILSSTKEE-TQAKSASALA 641 (1890)
Q Consensus 570 ~-~~i~~-L~~l----L~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~-~~~~~~i~~Lv~lL~s~~~~-~~~~A~~aL~ 641 (1890)
. ..... +-++ ++-..+-.+.. -+...+.+. -..+..+..|.+++.+..+. .-..||.=+.
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~d------------FWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~ 382 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKD------------FWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIF 382 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccC------------chhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHH
Confidence 0 00000 0000 11000000000 000001111 12345578889999876655 3456888888
Q ss_pred HHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHc
Q 000184 642 GIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 687 (1890)
Q Consensus 642 ~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 687 (1890)
.+.+..|+.+..+...|+=..+++++.+++++++-.|+.++..+..
T Consensus 383 ~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 383 QLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 8888889999889999999999999999999999999999987643
No 148
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.05 E-value=1.7 Score=58.27 Aligned_cols=314 Identities=15% Similarity=0.093 Sum_probs=183.9
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc---hhh
Q 000184 370 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG---SLW 446 (1890)
Q Consensus 370 i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~---~~~ 446 (1890)
+.+++...+.+-.....|..|++-|..|+..-+.-.++. -.+|-++.++.++..+||..|+.+|..+-..-. ..-
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD--RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD--RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh--hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 566666666544333347888888888876555444443 367889999999999999999999887543211 111
Q ss_pred HHHHhcCcHHHHHHhhCC-CCHHHHHHHHHHHHHcccC---ChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHH
Q 000184 447 RALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNE---NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNL 522 (1890)
Q Consensus 447 ~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L 522 (1890)
..|.-.=..|.|-.++.+ ...-++..-+..|..|+.. .-+..+.+...| ++++.+.+. ..+.
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g-------~~n~~nset-------~~~~ 566 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG-------MLNDPNSET-------APEQ 566 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc-------cccCccccc-------cccc
Confidence 112222235788788877 4555666667778777741 001112222222 222222210 0000
Q ss_pred hcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhc-----CCCCCcHHHHHHHHhcCCcchHHHHHHHHHH
Q 000184 523 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH-----KSDTATISQLTALLTSDLPESKVYVLDALKS 597 (1890)
Q Consensus 523 ~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~-----~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~ 597 (1890)
- .+.+.. .+ -.++-.....|+.+..+.+|+.-...|.-||. .+++-.++.|...|.+.+...+....+.+..
T Consensus 567 ~-~~~~~~-~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 567 N-YNTELQ-AL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVG 643 (1431)
T ss_pred c-cchHHH-HH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccc
Confidence 0 001111 11 11222334456666666777766666777763 2334556778888888877777766666654
Q ss_pred HhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHH
Q 000184 598 MLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVE 677 (1890)
Q Consensus 598 L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~ 677 (1890)
++-..... ..+...+|.|.+-|.++.+.+-..|..+|..|+...- .+...-...+.-..-+|.+++.-++..
T Consensus 644 vsi~VG~r------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l--l~K~~v~~i~~~v~PlL~hPN~WIR~~ 715 (1431)
T KOG1240|consen 644 VSIFVGWR------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL--LRKPAVKDILQDVLPLLCHPNLWIRRA 715 (1431)
T ss_pred eEEEEeee------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc--cchHHHHHHHHhhhhheeCchHHHHHH
Confidence 44322111 1234458889999999999999999999999998632 112223334555556678999999999
Q ss_pred HHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCC
Q 000184 678 ASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPV 714 (1890)
Q Consensus 678 a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~ 714 (1890)
++..+..+...-.. . -+.+...|.+-..+..+-
T Consensus 716 ~~~iI~~~~~~ls~---a-dvyc~l~P~irpfl~~~v 748 (1431)
T KOG1240|consen 716 VLGIIAAIARQLSA---A-DVYCKLMPLIRPFLERPV 748 (1431)
T ss_pred HHHHHHHHHhhhhh---h-hheEEeehhhHHhhhccH
Confidence 99999988643221 1 233455555555555443
No 149
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=93.93 E-value=0.74 Score=48.40 Aligned_cols=122 Identities=19% Similarity=0.261 Sum_probs=98.2
Q ss_pred HHHHhcCcHHHHHHhhCCCC------HHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC--CHHHHHHHHHH
Q 000184 447 RALQGREGIQLLISLLGLSS------EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASI 518 (1890)
Q Consensus 447 ~~i~~~g~i~~Lv~lL~~~~------~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~e~a~~a 518 (1890)
..++..+|+..|+++++++. .+....+..++..|-. +....+...+...|...+...... +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMe-Hg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELME-HGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHh-cCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45677899999999999876 3666778888888874 444455666777889999888766 57889999999
Q ss_pred HHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000184 519 LRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 519 L~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~ 569 (1890)
|.++...++.....|.++=-++.|+..|+.+++..+.++...+-.|-...+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999877777888888889999999999999999988877766655443
No 150
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.76 E-value=1.7 Score=52.18 Aligned_cols=200 Identities=16% Similarity=0.123 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhc-cCCchHHHHHHhhcCCHHHHHHHHHHHHHhhcc--
Q 000184 19 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGS-HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE-- 95 (1890)
Q Consensus 19 ~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~-~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~-- 95 (1890)
..++.++++.+.+.+ ...|+.++..+..+-..+= ..+++.. ....+..+.+.++.|+.+-+..|+++++-+|-.
T Consensus 42 e~~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKS--SSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 346888999998764 5699999999998876542 2223322 234466778888888877778888988888733
Q ss_pred -chhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHH--hccCC-----
Q 000184 96 -NELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQL--KNGLK----- 165 (1890)
Q Consensus 96 -~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll--~~~~~----- 165 (1890)
......+... ..|+|.+.+..++ ...|.+|+.+|.-++.-+-.+.. .+.-....+..+|... +....
T Consensus 119 ~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~--~~~~~~~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 119 AGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEE--ETEELMESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred CCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh--HHHHHHHHHHHHHHHHhcCcCCCccccc
Confidence 2333444443 5788888887554 45566777777766552111111 0000001122222221 11111
Q ss_pred --CCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000184 166 --SGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 224 (1890)
Q Consensus 166 --~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~ 224 (1890)
.++.+...++.+-.-|...-+.....-.-...+|.|..+|.+++.++|..|..+|+-+.
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11234444443333333232331111111345999999999999999999999997554
No 151
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.62 E-value=15 Score=48.33 Aligned_cols=274 Identities=18% Similarity=0.194 Sum_probs=158.1
Q ss_pred HHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCC----
Q 000184 176 GALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN---- 251 (1890)
Q Consensus 176 ~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---- 251 (1890)
.+|..+-..+.++.+...++.|+..++.++ -+++.|.....++.+|...++. -++..-+-.++..|+++-
T Consensus 664 DcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivscLitvdpk----qvhhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPK----QVHHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCcc----cccHHHHHHHHHHHHhcceecc
Confidence 456666666777778788999999888888 5677888888888887765542 123344566777777631
Q ss_pred C-------HhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCc--cccchhhhHHHHHHHHHHHHHhhCCCc
Q 000184 252 E-------ASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSK--EFMQGEYAQALQENAMCALANISGGLS 322 (1890)
Q Consensus 252 ~-------~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~~~~l~e~a~~aL~nl~~~~~ 322 (1890)
+ .+....-.+++|.+-.-+-..+..+.++||...|...|..-.+ +.+. ..+
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhd-esD------------------- 797 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHD-ESD------------------- 797 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCC-chh-------------------
Confidence 0 1345566788888877677788999999999999888754321 0000 000
Q ss_pred hhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCc
Q 000184 323 NVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPL 402 (1890)
Q Consensus 323 ~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~ 402 (1890)
+...+ .+..++.+++. .....|+.
T Consensus 798 -------------------------lcvyi----------------klfkilFrlfT---------------lavcenas 821 (2799)
T KOG1788|consen 798 -------------------------LCVYI----------------KLFKILFRLFT---------------LAVCENAS 821 (2799)
T ss_pred -------------------------hhhHH----------------HHHHHHHHHHH---------------HHHhhcch
Confidence 00000 11112222210 01134555
Q ss_pred cchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcc-
Q 000184 403 LSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS- 481 (1890)
Q Consensus 403 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~- 481 (1890)
++.++...---....++|+... -||.+.....-.....-.++.++ .+.-.--..|+..+-.+-
T Consensus 822 NrmklhtvITsqtftsLLresg------------llcvnler~viqlllElalevlv----ppfLtSEsaAcaeVfeled 885 (2799)
T KOG1788|consen 822 NRMKLHTVITSQTFTSLLRESG------------LLCVNLERHVIQLLLELALEVLV----PPFLTSESAACAEVFELED 885 (2799)
T ss_pred hhhheeeeeeHHHHHHHHHHhc------------cceecchHHHHHHHHHHHHHhhC----CchhhhhHHHHHHHhhccc
Confidence 6555543222233333332111 11211100000001111122221 121111222333333221
Q ss_pred --------cCC-hhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhh
Q 000184 482 --------NEN-DDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK 547 (1890)
Q Consensus 482 --------~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~ 547 (1890)
++. ...++.|..+|++..+++.+-...++.|-.-...+..++..++.+.....+.|.+..|+++..
T Consensus 886 nifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 886 NIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred ceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 111 123788999999999999999999999999999999999989999999889999999888764
No 152
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=1.2 Score=54.46 Aligned_cols=125 Identities=17% Similarity=0.165 Sum_probs=91.3
Q ss_pred hcchHHHHHHH-hcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh-cCCCHHHHHHHHHHHHHHHccCch
Q 000184 614 ANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRE 691 (1890)
Q Consensus 614 ~~~~i~~Lv~l-L~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~ 691 (1890)
..+.+..|... .+++++.+|++|+.+|+-+|-... ..++..+++| .+.++.++...+-+|+--|++..+
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 34567788887 678899999999999998886543 3455556666 678888999999999888877531
Q ss_pred hhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh--cCchHHHHHHhcCcHHHHHHHHhcCCcc
Q 000184 692 NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI--LDSEVSEKAIAEEIILPATRVLCEGTIS 757 (1890)
Q Consensus 692 ~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~--~~~~~~~~~~~~~~v~~L~~ll~~~~~~ 757 (1890)
.-++..|-.|+++++.-||..|+.+++-+. ++++...++ .++...+.+++.+...+
T Consensus 620 --------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 620 --------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKHES 677 (926)
T ss_pred --------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhhHh
Confidence 234667778999999999999999999887 344443333 35666666666655544
No 153
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.11 E-value=0.18 Score=48.91 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhcc
Q 000184 1426 LHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRS 1505 (1890)
Q Consensus 1426 vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~ 1505 (1890)
.|+.++.+|...+..-+.. ..-.-..++++++..+.|++..|+..+.+++++++......-...-....+.|.+++.++
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3677777777766554332 222334588999999999999999999999999987665433333456778888888888
Q ss_pred CCChhhHHHHHHHHHHhhcC
Q 000184 1506 EFGPDGQHSALQVLVNILEH 1525 (1890)
Q Consensus 1506 ~~~~~v~~~al~aL~nl~~~ 1525 (1890)
+ +.||.. .+.|-++++|
T Consensus 81 d--~~Vr~~-a~~Ld~llkd 97 (97)
T PF12755_consen 81 D--ENVRSA-AELLDRLLKD 97 (97)
T ss_pred c--hhHHHH-HHHHHHHhcC
Confidence 7 877764 4777776543
No 154
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=3.9 Score=52.15 Aligned_cols=274 Identities=19% Similarity=0.182 Sum_probs=155.6
Q ss_pred ChHHHHHHhccC-ChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHH-HHHHhhCChhh
Q 000184 1284 AVQPLVEILNTG-LEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAE-LCGVLFGNTRI 1361 (1890)
Q Consensus 1284 ~i~~Lv~lL~~~-~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~-~l~~L~~~~~~ 1361 (1890)
...-|...|++. ++.+++-++-.|+-.+.+..++. .-+.|.++|..+ ..+..+|+. ..+.+.-..
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~e---------iYe~lKevLy~D--~AvsGEAAgi~MGl~mlGt-- 480 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEE---------IYEKLKEVLYND--SAVSGEAAGIAMGLLMLGT-- 480 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccHH---------HHHHHHHHHhcc--chhhhhHHHHhhhhHhhCc--
Confidence 567788888765 45567778777776665544433 446667777543 355555543 333321110
Q ss_pred HHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHH--HHHhcc
Q 000184 1362 RSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRA--LVKLGK 1439 (1890)
Q Consensus 1362 ~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~a--L~~l~~ 1439 (1890)
....+++.++..-. +...++..+.|.-=. .......+.++=+.+-+++.+.|+..|..-..+ |...++
T Consensus 481 ----~~~eaiedm~~Ya~---ETQHeki~RGl~vGi---aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT 550 (929)
T KOG2062|consen 481 ----ANQEAIEDMLTYAQ---ETQHEKIIRGLAVGI---ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGT 550 (929)
T ss_pred ----CcHHHHHHHHHHhh---hhhHHHHHHHHHHhH---HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc
Confidence 01122222333222 222222222221100 000001122344555678888999999887654 445555
Q ss_pred CChhhHHHHHHcCcHHHHHHH-hccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHH
Q 000184 1440 DRPSCKLEMVKAGVIESVLDI-LHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQV 1518 (1890)
Q Consensus 1440 ~~~~~~~~l~~~~~i~~L~~l-L~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~a 1518 (1890)
.+ .++|..|+.. .+|.+|+|+..|..+++...... ...++..+.+|+. +..+-||..++.+
T Consensus 551 gn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLse-s~N~HVRyGaA~A 612 (929)
T KOG2062|consen 551 GN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSE-SYNPHVRYGAAMA 612 (929)
T ss_pred Cc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecC--------hhhchHHHHHHhh-hcChhhhhhHHHH
Confidence 54 3477888887 67888999999888886543322 2346777777763 3459999999999
Q ss_pred HHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCH--HHH
Q 000184 1519 LVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIH--ILQ 1596 (1890)
Q Consensus 1519 L~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~--~v~ 1596 (1890)
|+=.+... ....+|..|=.+.+++...||+-|+-+++.+.....=+-.-...+....+.+++.+.+. -++
T Consensus 613 LGIaCAGt--------G~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK 684 (929)
T KOG2062|consen 613 LGIACAGT--------GLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAK 684 (929)
T ss_pred HhhhhcCC--------CcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHH
Confidence 98653322 12234566666667888899999999999887632211122223445667777755433 455
Q ss_pred HHHHHHHHHH
Q 000184 1597 QRAVKALVSI 1606 (1890)
Q Consensus 1597 ~~A~~aL~~l 1606 (1890)
..|+-|=+-+
T Consensus 685 ~GAilAqGil 694 (929)
T KOG2062|consen 685 FGAILAQGIL 694 (929)
T ss_pred HHHHHHhhhh
Confidence 5665554444
No 155
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.96 E-value=0.48 Score=45.93 Aligned_cols=94 Identities=17% Similarity=0.113 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcC
Q 000184 675 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEG 754 (1890)
Q Consensus 675 ~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~ 754 (1890)
++.++.+|...+.+-+.. ..-.-...+++++..+.+++..||..|+.+|.|++.......-..-.++...|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHh--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566666665544332 222335678999999999999999999999999983222211112478999999999999
Q ss_pred CcchHHHHHHHHHHHhh
Q 000184 755 TISGKTLAAAAIARLLH 771 (1890)
Q Consensus 755 ~~~~~~~aa~aL~~L~~ 771 (1890)
++.+|..| +.|.+++.
T Consensus 81 d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 81 DENVRSAA-ELLDRLLK 96 (97)
T ss_pred chhHHHHH-HHHHHHhc
Confidence 98888765 67777763
No 156
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=92.70 E-value=0.63 Score=51.23 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcH-HHHHHH
Q 000184 1509 PDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVI-GPLIRV 1587 (1890)
Q Consensus 1509 ~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i-~~Lv~l 1587 (1890)
+.+|.+++.+++.++...++. -...++.+...|.++++.||..|+.+|.+|...+ .+.-.|.+ ..+..+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d----~ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED----MIKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC----ceeehhhhhHHHHHH
Confidence 778999999999986543322 2345788999999999999999999999998632 22233444 788888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcc-ChhHHHhhcChHHHHHHHhh
Q 000184 1588 LGSGIHILQQRAVKALVSIALT-WPNEIAKEGGVTELSKIILQ 1629 (1890)
Q Consensus 1588 L~s~~~~v~~~A~~aL~~l~~~-~~~~l~~~g~I~~Ll~~l~~ 1629 (1890)
+.+++++++..|..++..+... .++.+... +++++-.+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~--~~e~i~~l~~ 112 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNN--FPELISSLNN 112 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHhC
Confidence 8999999999999999999877 44444333 4444444443
No 157
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.80 E-value=4.2 Score=51.65 Aligned_cols=105 Identities=15% Similarity=0.034 Sum_probs=73.1
Q ss_pred ChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHH
Q 000184 1327 NAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELV 1406 (1890)
Q Consensus 1327 g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 1406 (1890)
|....|++...+ ++..|+.....++..+.++-.-...-.-.+....+...+.+..+.+|..|+-+|.++-+++..-
T Consensus 85 ~~f~hlLRg~Es-kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTES-KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccC-cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 455556565554 4567888888888888764322222233455667777788999999999999999998332110
Q ss_pred HHcCChHHHHHhhc-CCcHhHHHHHHHHHHH
Q 000184 1407 AAHGAVIPLVGLLY-GRNYMLHEAISRALVK 1436 (1890)
Q Consensus 1407 ~~~gav~~L~~lL~-~~~~~vr~~A~~aL~~ 1436 (1890)
+..++..+..+++ +++++|||+|...+..
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 2446788888888 7999999998765543
No 158
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.60 E-value=5.4 Score=48.24 Aligned_cols=202 Identities=11% Similarity=0.151 Sum_probs=147.3
Q ss_pred hhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhH-----HHHHHH--cCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000184 613 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL-----RESSIA--VKTLWSVMKLLDVGSECILVEASRCLAAI 685 (1890)
Q Consensus 613 ~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~-----~~~~~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 685 (1890)
-..+.++.|+..|..-+-+.|..++....++-+...+. .+.+.. ..++..|+..-. ++++...+-..|...
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec 150 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLREC 150 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHH
Confidence 34577899999999999999999999999998764322 222221 223444443333 445556666666655
Q ss_pred HccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh-cCchHHHHHHh---cCcHHHHHHHHhcCCcchHHH
Q 000184 686 FLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI-LDSEVSEKAIA---EEIILPATRVLCEGTISGKTL 761 (1890)
Q Consensus 686 ~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~-~~~~~~~~~~~---~~~v~~L~~ll~~~~~~~~~~ 761 (1890)
..+ ....+. +.....+..+.+....++-++...|..++..++ .++....+++. +..+....+++.+++--+|++
T Consensus 151 ~k~-e~l~~~-iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 151 IKH-ESLAKI-ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp TTS-HHHHHH-HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred Hhh-HHHHHH-HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 444 224454 667888888999999999999999999999987 55667777763 456677888888888889999
Q ss_pred HHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcC
Q 000184 762 AAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSG 819 (1890)
Q Consensus 762 aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~ 819 (1890)
+.+-|+.++-++..-..|..|+....-++-++.+|++.+..+. .+|+-++--+..++
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq-~eAFhvFKvFVANp 285 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQ-FEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHH-HHHHHHHHHHHH-S
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhh-HHHHHHHHHHHhCC
Confidence 9999999999999888889999999999999999999998888 89988877665443
No 159
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.50 E-value=53 Score=42.39 Aligned_cols=208 Identities=15% Similarity=0.077 Sum_probs=126.6
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 000184 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 532 (1890)
Q Consensus 453 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~ 532 (1890)
+.+..+++...+++..+|+.++..|..+.. .......-+-.+....+..-+.+..+.+|-+|+.+|..+=.+..+-
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence 667778888889999999999999999984 3333333344456667777778888999999999999997421110
Q ss_pred HHhCCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHh
Q 000184 533 VESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREG 611 (1890)
Q Consensus 533 i~~~g~i~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 611 (1890)
+..++..+..++++ +++++++.| |.|+. .++.+.|.+++--++-+..++.-+..-+ .+.-+ .+..
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRRaa---LsnI~--vdnsTlp~IveRarDV~~anRrlvY~r~------lpkid-~r~l 226 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRRAA---LSNIS--VDNSTLPCIVERARDVSGANRRLVYERC------LPKID-LRSL 226 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHHHH---HHhhc--cCcccchhHHHHhhhhhHHHHHHHHHHh------hhhhh-hhhh
Confidence 23467788888887 567788765 44443 3456677776654443333322211110 00001 0100
Q ss_pred hhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh-cCCCHHHHHHHHHHHHHHHc
Q 000184 612 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFL 687 (1890)
Q Consensus 612 ~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~ 687 (1890)
.-..-+..|-+-|.+.+..++.++..+|..==-. ...|-++-|++-+ -+.+.++...++.++...++
T Consensus 227 -si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~--------~~dgni~ElL~~ldvsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 227 -SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLR--------FSDGNILELLERLDVSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred -hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh--------hccccHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 0012244455556666777887777766541110 1235566666666 46666899999999988643
No 160
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=91.28 E-value=4.6 Score=42.68 Aligned_cols=118 Identities=17% Similarity=0.234 Sum_probs=91.3
Q ss_pred HHHHhcCCHHHHHHhhcCCCH------HHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCC-CHhHHHHHHHH
Q 000184 190 AATVQAGGIDILVKLLTLGQS------STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGA 262 (1890)
Q Consensus 190 ~~i~~~g~v~~Lv~lL~~~~~------~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~~Aa~a 262 (1890)
...+..||++.|++++.++.. +...++..++..|+.. +-..-+..+...+...+..++... |..+...|..+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 446778999999999999763 6778888888887754 334556777778888888887654 67899999999
Q ss_pred HHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHh
Q 000184 263 LKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 317 (1890)
Q Consensus 263 L~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl 317 (1890)
|-++...++.....+.+.=-++.|+..|+.++ +.+|-+++..+--+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~---------~~iq~naiaLinAL 129 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSN---------QEIQTNAIALINAL 129 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC---------HHHHHHHHHHHHHH
Confidence 99999966665666666667999999998864 77888887655443
No 161
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.88 E-value=16 Score=46.91 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=81.1
Q ss_pred cCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHH
Q 000184 1380 TEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVL 1458 (1890)
Q Consensus 1380 ~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~ 1458 (1890)
.++...+.-|+.-+.+++ .-++..+.+ ++.+++|..+.+..+|..|++.|..++.++++.... +.+.|+
T Consensus 33 kg~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~ 102 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLV 102 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHH
Confidence 367888888888888888 667766655 899999999999999999999999999987665544 668899
Q ss_pred HHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhh---ccCCChhhHHHHHHHHHHh
Q 000184 1459 DILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT---RSEFGPDGQHSALQVLVNI 1522 (1890)
Q Consensus 1459 ~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~---~~~~~~~v~~~al~aL~nl 1522 (1890)
.+|..++.......-.+|..|-.... .+.+..++.-+. ..+ ..+|..++.-|..-
T Consensus 103 QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~d--e~~Re~~lkFl~~k 160 (556)
T PF05918_consen 103 QLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGD--EQVRERALKFLREK 160 (556)
T ss_dssp HHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS---HHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCc--hHHHHHHHHHHHHH
Confidence 99988876555555555544433322 234666777665 334 66787788777544
No 162
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.82 E-value=8.2 Score=49.38 Aligned_cols=130 Identities=13% Similarity=0.188 Sum_probs=86.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHh
Q 000184 456 QLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES 535 (1890)
Q Consensus 456 ~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~ 535 (1890)
..++...+ ++...+..|+..+...-+..++.... ++..+++|+++.+..+|..|...|-.+|.++++.-..
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k--- 96 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK--- 96 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH---
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH---
Confidence 34445444 46888888999999988878876554 7788999999999999999999999999976665544
Q ss_pred CCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHh---cCCcchHHHHHHHHH
Q 000184 536 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLT---SDLPESKVYVLDALK 596 (1890)
Q Consensus 536 ~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~---~~~~~~~~~a~~aL~ 596 (1890)
++..|+++|++.++.-...+-.+|..|...+..+++..+..-+. ++++.+++.++.-|.
T Consensus 97 --vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 97 --VADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp --HHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 45689999998887777777777777766555556666555554 455566776665443
No 163
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.72 E-value=4.2 Score=44.78 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHH
Q 000184 629 KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV 708 (1890)
Q Consensus 629 ~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ 708 (1890)
++.+|..+..+++.|+...+... ...+|.+...|.++++.+++.|+.+|..|.... .-+ +....+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d--~ik---~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILED--MIK---VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--cee---ehhhhhHHHHH
Confidence 57889999999999998776543 356899999999999999999999999997653 211 12334477888
Q ss_pred HhCCCCHHHHHHHHHHHHHHhcC
Q 000184 709 LAGSPVLEVAEQATCALANLILD 731 (1890)
Q Consensus 709 ll~~~~~ev~~~aa~aL~nL~~~ 731 (1890)
++.+++++|+..|...+..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998854
No 164
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.60 E-value=0.68 Score=46.15 Aligned_cols=70 Identities=6% Similarity=0.007 Sum_probs=59.0
Q ss_pred cHHHHHHHh-cCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 000184 412 AKRLLVGLI-TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 481 (1890)
Q Consensus 412 ~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~ 481 (1890)
.++.|+.+| .+.|+.+..-|+.-|+.++...|.-+..+.+.|+...+++++.+++++++++|..++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 567889999 4557888888999999999988887777778899999999999999999999999988765
No 165
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.33 E-value=0.82 Score=45.60 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=63.4
Q ss_pred cchHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHcc
Q 000184 615 NDAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 688 (1890)
Q Consensus 615 ~~~i~~Lv~lL-~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 688 (1890)
...+..|+++| .+.++.+...||.=|+.+++..|.-+..+...|+=..+++++.+++++|+.+|+.++..+...
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 44588999999 456888899999999999999888888888899999999999999999999999999988643
No 166
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.97 E-value=3 Score=47.83 Aligned_cols=101 Identities=15% Similarity=0.109 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhh
Q 000184 211 STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINAT 290 (1890)
Q Consensus 211 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll 290 (1890)
.....|..+|.-++.-|++++..+.+..++..|+.+|...++..++..+..+|..+-..++.+.+.+-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34566778888888889989999999999999999997666778999999999998888999999999999999999999
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhh
Q 000184 291 IAPSKEFMQGEYAQALQENAMCALANIS 318 (1890)
Q Consensus 291 ~~~~~~~~~~~~~~~l~e~a~~aL~nl~ 318 (1890)
.+.+ .+.+++-.++..|.-..
T Consensus 186 k~~~-------~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKS-------TDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccc-------ccHHHhHHHHHHHHHHH
Confidence 8865 24667777777665533
No 167
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.89 E-value=20 Score=48.37 Aligned_cols=126 Identities=15% Similarity=0.186 Sum_probs=77.0
Q ss_pred HHhcCCHHHHHHhhcCC-----CHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHc---CCCC----HhHHHHH
Q 000184 192 TVQAGGIDILVKLLTLG-----QSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG---SGNE----ASVRAEA 259 (1890)
Q Consensus 192 i~~~g~v~~Lv~lL~~~-----~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~----~~~~~~A 259 (1890)
+.++||+..++.++.+- ..+.......+|. .+..-..++..+.+.|+++.|++.+. ..+. .++-+.-
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~-~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLR-YCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHH-HHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 56799999999999873 3345555666664 34444668899999999999998875 2212 3444444
Q ss_pred HHHHHHhhhcCHHHH----HHHHhcCC--------hHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCch
Q 000184 260 AGALKSLSDHCKDAR----REIAGSNG--------IPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSN 323 (1890)
Q Consensus 260 a~aL~~Ls~~~~~~~----~~i~~~g~--------i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~ 323 (1890)
..++..|........ .......| +..+++.+.++. ...++.+....++.|-+++.|.+.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~-----~r~~~~i~~~l~RiLP~Lt~G~~e 262 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPF-----VRSNPQILQALARILPFLTYGNEE 262 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCcc-----ccCCHHHHHHHHHHhhHHhcCCHH
Confidence 455544443111000 00112222 666677666543 223467788888888888887644
No 168
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.75 E-value=2.1 Score=49.04 Aligned_cols=98 Identities=14% Similarity=0.215 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC-CCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhcc
Q 000184 427 VQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 505 (1890)
Q Consensus 427 v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~ 505 (1890)
....|++.|.-+|--++..+..+.+..+++.|+++|. ...+.++..+..+|..+-.+++.|.+.+.+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 3556788999999998988888888999999999994 457889999988887777789999999999999999999998
Q ss_pred CC--CHHHHHHHHHHHHHHhc
Q 000184 506 SG--SAKAKEDSASILRNLCN 524 (1890)
Q Consensus 506 ~~--~~~~~e~a~~aL~~L~~ 524 (1890)
+. +.+++-.+...|+-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 77 67788888877765554
No 169
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.47 E-value=9.4 Score=47.18 Aligned_cols=247 Identities=21% Similarity=0.149 Sum_probs=128.3
Q ss_pred hhhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHH-HHHHH-HHHHHHhh
Q 000184 16 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLA-VKIQA-ATVLGSLC 93 (1890)
Q Consensus 16 ~~~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~-~~~~a-a~~L~~L~ 93 (1890)
.++.++|.-+++.+. ++.+...|+.++..|+.-+..+ ..|+.+.++ |.+..++..+.+..+. .-..+ +.++.-++
T Consensus 17 ~rf~Dev~ylld~l~-~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra~-g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~ 93 (361)
T PF07814_consen 17 QRFADEVEYLLDGLE-SSSSSSVRRSSLLELASKCADP-QFRRQFRAH-GLVKRLFKALSDAPDDDILALATAAILYVLS 93 (361)
T ss_pred hhHHHHHHHHHhhcc-cCCCccHHHHHHHHHHHHhCCH-HHHHHHHHc-CcHHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 356788999999999 4556678888888888777755 566666665 9999999999544332 33333 44444454
Q ss_pred ccchhhHHHHhcCChHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccC----
Q 000184 94 KENELRVKVLLGGCIPPLLGLLKSSS-----AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL---- 164 (1890)
Q Consensus 94 ~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~---- 164 (1890)
.+...-.-+...++...++.++.... .+....-.. +++. +..+.+....+++....
T Consensus 94 ~d~~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~---~lsk------------~~~~~~~~~~~~~~~~~~~~~ 158 (361)
T PF07814_consen 94 RDGLNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKK---NLSK------------VQQKSRSLCKELLSSGSSWKS 158 (361)
T ss_pred cCCcchhhhhchhHHHHHHHHhccccccccccchhhhhhh---hhhH------------HHHHHHHHHHHHHhccccccc
Confidence 43332222334566777788887110 000000000 0000 00011111111110000
Q ss_pred --CCCchHHHHHHHHHHHhc--------------cCChhHHHHHHhcCCHHHHHHhhcC----C-------CH-----HH
Q 000184 165 --KSGNVVDNLLTGALRNLS--------------TSTEGFWAATVQAGGIDILVKLLTL----G-------QS-----ST 212 (1890)
Q Consensus 165 --~~~~~v~~~~~~~L~~L~--------------~~~~~~~~~i~~~g~v~~Lv~lL~~----~-------~~-----~v 212 (1890)
......+..+..++..+| ...+.++..+++.||++.++.++.. . .+ ..
T Consensus 159 ~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~ 238 (361)
T PF07814_consen 159 PKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLID 238 (361)
T ss_pred cCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHH
Confidence 000112222333444442 1223466678889999999999862 1 11 12
Q ss_pred HHHHHHHHHHHhhcCchhhhHhhc--cchHHH-HHHHHcCCCC--HhHHHHHHHHHHHhhhcCHHHHHHHHhc
Q 000184 213 QAHVCFLLACMMEEDVSVCSRVLA--ADATKQ-LLKLLGSGNE--ASVRAEAAGALKSLSDHCKDARREIAGS 280 (1890)
Q Consensus 213 ~~~a~~~L~~L~~~~~~~~~~i~~--~g~i~~-Lv~lL~~~~~--~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~ 280 (1890)
-..+.++|-+.+...+++...... .+.++. +..++....+ .+....+.+.+.|++.++++....+...
T Consensus 239 l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~ 311 (361)
T PF07814_consen 239 LERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASP 311 (361)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhh
Confidence 345666665555444444443332 222222 2222222111 3346788999999999887766666554
No 170
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.39 E-value=0.43 Score=35.38 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.3
Q ss_pred hHHHHHhhcCCcHhHHHHHHHHHHHhccC
Q 000184 1412 VIPLVGLLYGRNYMLHEAISRALVKLGKD 1440 (1890)
Q Consensus 1412 v~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 1440 (1890)
++.++++++|++++||.+|+.+|++++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999999998753
No 171
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.77 E-value=5.8 Score=52.07 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=100.3
Q ss_pred cHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHH
Q 000184 572 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651 (1890)
Q Consensus 572 ~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~ 651 (1890)
.+|.++...+.....+|-+-..+|.++....+.+.+... -..-+|.|++.|.-+|..+|-....++.-+....+...
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~---~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ---FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc---hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 345555555555556677777788877775444332211 13457888899999999999999998887776655433
Q ss_pred HHHHHcCchHHHHHhhcCCC---HHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000184 652 ESSIAVKTLWSVMKLLDVGS---ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCA 724 (1890)
Q Consensus 652 ~~~~~~g~i~~Lv~lL~~~~---~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~a 724 (1890)
. ---...+|.++.+-.+++ ..++..|++++..|.+..|...-. .....++..|.+.|.++..-||++|+.+
T Consensus 945 t-~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~-~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 T-EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL-SFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred h-HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc-cccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2 112335777777766655 568889999999998755432211 3345678899999999988888887755
No 172
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=88.74 E-value=7.5 Score=52.20 Aligned_cols=203 Identities=18% Similarity=0.173 Sum_probs=133.7
Q ss_pred CChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhc-cCCCCHHHHHHHHHHHHHhhcc--c
Q 000184 1493 KVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPL-LDSPAPAVQQLAAELLSHLLLE--E 1569 (1890)
Q Consensus 1493 ~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~l-L~s~~~~vq~~A~~aL~~l~~~--~ 1569 (1890)
+..+.+-.-+.+++ ...|+.|++.+...++... ........+.+..++.. +++.+..+...++..|..++.- .
T Consensus 253 ki~~~l~t~~~s~~--WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 253 KITKNLETEMLSKK--WKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hcChHHHHhhhccc--hHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 34555556667777 6678889999998887766 22212334444444443 4477888888888888888762 1
Q ss_pred ccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhh
Q 000184 1570 QLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSI 1649 (1890)
Q Consensus 1570 ~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~ 1649 (1890)
.++. ...++.+.+..-+.+..+.++..+..++-.+++..+. .+. ++.++..+...+|+.+..++...-..+..+
T Consensus 329 ~~~~--~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l--~~~--~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 329 LFRK--YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL--SKM--SEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred hhHH--HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH--HHH--HHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 1111 1235568888888889999999999999888875533 222 466777788889888877666333333333
Q ss_pred hhh-chhhhcccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHcc
Q 000184 1650 LQF-SSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRS 1713 (1890)
Q Consensus 1650 ~~~-~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~ 1713 (1890)
... ....-.+..+|.++....+.+.+||.+|.++++.+.. ++.+++++.++.-++.
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k--------~~Ge~~~~k~L~~~~~ 459 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK--------VHGEEVFKKLLKDLDK 459 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHhhcc
Confidence 211 1112223468889999999999999999999998864 4445566666555553
No 173
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.46 E-value=6.7 Score=50.73 Aligned_cols=102 Identities=13% Similarity=0.172 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhc----CcHHHHHHhhCC-CCHHHHHHHHHHHHHcccCChhcHHHHHhcCCc
Q 000184 423 ATNEVQEELVRALLKLCNNEGSLWRALQGR----EGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGI 497 (1890)
Q Consensus 423 ~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~----g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i 497 (1890)
.|++++..|+.+|.|+.+..+.+|..++.. .+-+.. .+.. +.....+... ..-|.++...+||
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l----------~~mw~~Vr~ndGI 741 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVL----------RQMWEAVRGNDGI 741 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHH----------HHHHHHHhcCccH
Confidence 389999999999999988877766644321 111111 1111 1112122222 2335555667899
Q ss_pred HHHHHhccCC-----CHHHHHHHHHHHHHHhcCChHHHHHHHhCC
Q 000184 498 PPLVQILESG-----SAKAKEDSASILRNLCNHSEDIRACVESAD 537 (1890)
Q Consensus 498 ~~Lv~lL~~~-----~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g 537 (1890)
..|++||+-. -..+|.-|+.+|.-|+.+ +..|+.+.+.-
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~-~tVrQIltKLp 785 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARD-DTVRQILTKLP 785 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccC-cHHHHHHHhCc
Confidence 9999999754 356889999999999985 78887766543
No 174
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=88.23 E-value=17 Score=44.43 Aligned_cols=189 Identities=14% Similarity=0.089 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchh--hHhhhhhccCCchHHHHHHhhc-CCHHHHHHHHHHHHHh
Q 000184 16 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE--NAFSAVGSHSQAVPVLVSLLRS-GSLAVKIQAATVLGSL 92 (1890)
Q Consensus 16 ~~~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~--~~r~~i~~~~g~v~~Lv~lL~~-~~~~~~~~aa~~L~~L 92 (1890)
-.....|.+++..+.+. ...+++..|+..|..+..+.+ .+...++ .-+..++..|.+ .++..|..|.+.|..+
T Consensus 282 ~~~~~~v~~~l~~~~g~-e~a~~~k~alsel~~m~~e~sfsvWeq~f~---~iL~~l~EvL~d~~~~~~k~laLrvL~~m 357 (516)
T KOG2956|consen 282 VDQSALVADLLKEISGS-ERASERKEALSELPKMLCEGSFSVWEQHFA---EILLLLLEVLSDSEDEIIKKLALRVLREM 357 (516)
T ss_pred cchhHHHHHHHHhccCc-cchhHHHHHHHHHHHHHHccchhHHHHHHH---HHHHHHHHHHccchhhHHHHHHHHHHHHH
Confidence 33456777788777765 445788999999999888764 4444332 345567788877 7778999999999999
Q ss_pred hccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHH-HHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHH
Q 000184 93 CKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAA-KTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVD 171 (1890)
Q Consensus 93 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~-~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~ 171 (1890)
|++...|..=--+-+|..+++.=....+++...|. .++.-+++. ..-.. |..+..++.. .|....
T Consensus 358 l~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~----~P~~~-------I~~i~~~Ilt---~D~~~~ 423 (516)
T KOG2956|consen 358 LTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH----LPLQC-------IVNISPLILT---ADEPRA 423 (516)
T ss_pred HHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh----CchhH-------HHHHhhHHhc---CcchHH
Confidence 96554433221224566666666655666654444 445556551 11111 1111222221 111122
Q ss_pred HHHHHHHHHhccCC--hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000184 172 NLLTGALRNLSTST--EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 224 (1890)
Q Consensus 172 ~~~~~~L~~L~~~~--~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~ 224 (1890)
..+...+..++..- ++.-. ++ ....|.+++-..+.+..+|..|..||..+.
T Consensus 424 ~~~iKm~Tkl~e~l~~EeL~~-ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 424 VAVIKMLTKLFERLSAEELLN-LL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHHHHHHhhcCHHHHHH-hh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 22333344443221 11111 11 256788888889999999999999986553
No 175
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=88.15 E-value=0.88 Score=33.72 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 000184 618 VETMIKILSSTKEETQAKSASALAGIFET 646 (1890)
Q Consensus 618 i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~ 646 (1890)
+|.+.+++.++++++|..|+.+|..++..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999863
No 176
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.80 E-value=36 Score=44.54 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=99.0
Q ss_pred hcHHHHHhcCCcHHHHHhccCC--------CHHHHHHHHHHHHHHhcCChHHHHHHHh--------CCCHHHHHHHhhc-
Q 000184 486 DSKWAITAAGGIPPLVQILESG--------SAKAKEDSASILRNLCNHSEDIRACVES--------ADAVPALLWLLKN- 548 (1890)
Q Consensus 486 ~~~~~i~~~g~i~~Lv~lL~~~--------~~~~~e~a~~aL~~L~~~~~~~r~~i~~--------~g~i~~Lv~ll~~- 548 (1890)
+..+.+.+.+++..++++...+ ..+....|..+|+-+.. -|+.+..+.. +.++..+++.-.-
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 4456677888999999988644 23556678888887777 4788877653 2244444433221
Q ss_pred ---CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhc-CCcch------HHH-HHHHHHHHhhhcCchHHHHHhhhhcch
Q 000184 549 ---GSANGKEIAAKTLNHLIHKSDTATISQLTALLTS-DLPES------KVY-VLDALKSMLSVVSFSDILREGSAANDA 617 (1890)
Q Consensus 549 ---~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~-~~~~~------~~~-a~~aL~~L~~~~~~~~~~~~~~~~~~~ 617 (1890)
.+|+.+..|..++.|+.+.+.......+..+..+ +++.. +.. ....|. .....+..++|
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~----------~mw~~Vr~ndG 740 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLR----------QMWEAVRGNDG 740 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHH----------HHHHHHhcCcc
Confidence 3688999999999999885543222223333221 22111 000 011111 12446778999
Q ss_pred HHHHHHHhcCC-----CHHHHHHHHHHHHHHhhcChhHHHHHHH
Q 000184 618 VETMIKILSST-----KEETQAKSASALAGIFETRKDLRESSIA 656 (1890)
Q Consensus 618 i~~Lv~lL~s~-----~~~~~~~A~~aL~~L~~~~~~~~~~~~~ 656 (1890)
|..|++||.-. -+.+|.-||.+|..|+++ +..++.+..
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~-~tVrQIltK 783 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARD-DTVRQILTK 783 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccC-cHHHHHHHh
Confidence 99999999642 356889999999999997 556654443
No 177
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.25 E-value=9.7 Score=46.81 Aligned_cols=145 Identities=16% Similarity=0.122 Sum_probs=92.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCC---hhhHHH
Q 000184 1288 LVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGN---TRIRST 1364 (1890)
Q Consensus 1288 Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~---~~~~~~ 1364 (1890)
+..-..+++...|..|+..|++.+.+.+.+..-. ..-.++.++.-|-+..+.+|.-++...|..+... .+....
T Consensus 263 la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th---~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~ 339 (533)
T KOG2032|consen 263 LANKATDPSAKSRGMACRGLGNTASGAPDKVRTH---KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESY 339 (533)
T ss_pred HHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhh
Confidence 3333456677888889999999999755543322 1246777887776665567777777666654332 222222
Q ss_pred HHhhCchHHHHHHHccCChHHHHHHHHHHHhcc------CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhc
Q 000184 1365 VAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV------DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLG 1438 (1890)
Q Consensus 1365 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~------~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~ 1438 (1890)
-....-++..++.+..++.|..+...++.|+ +.+...+.+ .+-..+|+--+++.++.+-++.- .....+
T Consensus 340 --~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v--~k~~~~lllhl~d~~p~va~ACr-~~~~~c 414 (533)
T KOG2032|consen 340 --LLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV--KKRLAPLLLHLQDPNPYVARACR-SELRTC 414 (533)
T ss_pred --chhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH--HhccccceeeeCCCChHHHHHHH-HHHHhc
Confidence 2234467788888999999999987777766 223333323 33456788888899998766554 444444
Q ss_pred cC
Q 000184 1439 KD 1440 (1890)
Q Consensus 1439 ~~ 1440 (1890)
..
T Consensus 415 ~p 416 (533)
T KOG2032|consen 415 YP 416 (533)
T ss_pred Cc
Confidence 44
No 178
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=87.14 E-value=90 Score=42.40 Aligned_cols=245 Identities=18% Similarity=0.115 Sum_probs=139.9
Q ss_pred cCCchHHHHHHhhcCC-----HHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhc----CCC----HHHHHHHHHH
Q 000184 63 HSQAVPVLVSLLRSGS-----LAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK----SSS----AEGQIAAAKT 129 (1890)
Q Consensus 63 ~~g~v~~Lv~lL~~~~-----~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a~~a 129 (1890)
+.|++..++.++.+-. .+.-......|...|+-..+|..++..|+++.|++.|. .+. .+.-+.-...
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3688999999887532 24445566677777788899999999999999999985 333 3443333333
Q ss_pred HHHHhcCCCCC-ccccchhhhcC-----C---hHHHHHHHhccC-CCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHH
Q 000184 130 IYAVSQGGAKD-YVGSKIFSTEG-----V---VPVLWEQLKNGL-KSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGID 199 (1890)
Q Consensus 130 L~~ls~~~~~~-~~~~~~~~~~g-----~---ip~L~~ll~~~~-~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~ 199 (1890)
+..+......+ ..+.+.+.... . +..|++.++... ...+.+....+++|-.|+.+.++....+++. ..
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 33332211111 11111111111 2 666777776543 2345577788999999999887776655432 22
Q ss_pred HHHHhhcCC---CHHHHHHHHHHHHHHhhcC------chhhhHhhccchHHHHHHHHcCCCC-------Hh--------H
Q 000184 200 ILVKLLTLG---QSSTQAHVCFLLACMMEED------VSVCSRVLAADATKQLLKLLGSGNE-------AS--------V 255 (1890)
Q Consensus 200 ~Lv~lL~~~---~~~v~~~a~~~L~~L~~~~------~~~~~~i~~~g~i~~Lv~lL~~~~~-------~~--------~ 255 (1890)
+.+++=+-+ .++- ...+.+++.++..- ..-+..+++.|.+...++.|....+ ++ .
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 222221111 1111 12244444444221 1246778899999988887754321 11 2
Q ss_pred HHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHH
Q 000184 256 RAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALAN 316 (1890)
Q Consensus 256 ~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~n 316 (1890)
...+...|.-|+.++...+.. +..++|+.+- .|...+.+ ..-..+-|+.+.+|.+
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH-~LEqvss~----~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLL-IAEQLLPLLH-RLEQVSSE----EHIGSLAENLLEALAE 406 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHH-HhhcCCCc----cchHHHHHHHHHHHhc
Confidence 346778888888876655544 5567775444 44333211 1235577777777766
No 179
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.03 E-value=1.2e+02 Score=40.48 Aligned_cols=258 Identities=12% Similarity=0.112 Sum_probs=138.7
Q ss_pred HHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCC----
Q 000184 433 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGS---- 508 (1890)
Q Consensus 433 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---- 508 (1890)
.+|..+-.++.++.+.+.++.|+..++.++ -+++-|......+..|-..++... .+.-+-.+++.|+++-
T Consensus 664 DcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceecc
Confidence 356667777788888899999988888877 344555555555555543333311 1123456777777741
Q ss_pred --------HHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcC------Chh----HHHHHHHHHHHH---hcC
Q 000184 509 --------AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG------SAN----GKEIAAKTLNHL---IHK 567 (1890)
Q Consensus 509 --------~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~------~~~----~~~~Aa~aL~~L---~~~ 567 (1890)
.........+++.+-..+...|..+.+.|+...|...|..- .+. +--+-...|.++ +-.
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 12334567788888877778888888999998888777541 111 111111222221 100
Q ss_pred CCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHH----HhcCCCHHHHHHHHHHHHHH
Q 000184 568 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK----ILSSTKEETQAKSASALAGI 643 (1890)
Q Consensus 568 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~----lL~s~~~~~~~~A~~aL~~L 643 (1890)
.++..-..+ +..+.......|-..+.+.-.+. -| ..|..|.+ .+-.+.-.-...||..+-.+
T Consensus 818 enasNrmkl-------htvITsqtftsLLresgllcvnl-er------~viqlllElalevlvppfLtSEsaAcaeVfel 883 (2799)
T KOG1788|consen 818 ENASNRMKL-------HTVITSQTFTSLLRESGLLCVNL-ER------HVIQLLLELALEVLVPPFLTSESAACAEVFEL 883 (2799)
T ss_pred hcchhhhhe-------eeeeeHHHHHHHHHHhccceecc-hH------HHHHHHHHHHHHhhCCchhhhhHHHHHHHhhc
Confidence 000000000 00011111111111111000000 00 01233332 22223222233444444443
Q ss_pred hhc----------ChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhC
Q 000184 644 FET----------RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG 711 (1890)
Q Consensus 644 ~~~----------~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~ 711 (1890)
-.+ ..+..+.+..+|++..|++.+-...+..+.+.++.+.++++-.++.+.. .-..|.++.|+++.+
T Consensus 884 ednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnael-ltS~gcvellleIiy 960 (2799)
T KOG1788|consen 884 EDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAEL-LTSAGCVELLLEIIY 960 (2799)
T ss_pred ccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhh-hhcccHHHHHHHHhh
Confidence 322 1123445778899999999998888999999999999998887654443 556788888887764
No 180
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=86.93 E-value=63 Score=37.22 Aligned_cols=201 Identities=14% Similarity=0.139 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhc-CcHHHHHHh-------hCCC--CH---HHHHHHHHHHHHcccCChhcHH
Q 000184 423 ATNEVQEELVRALLKLCNNEGSLWRALQGR-EGIQLLISL-------LGLS--SE---QQQECSVALLCLLSNENDDSKW 489 (1890)
Q Consensus 423 ~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~-g~i~~Lv~l-------L~~~--~~---~v~~~A~~aL~nL~~~~~~~~~ 489 (1890)
-+++.|+.|+.-|..--...++..-.+-.. |.+..|++= +..+ +. .-...|...|.-+++ +++.|.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 367778887777665443334433344333 445555432 2222 12 233456667777775 899999
Q ss_pred HHHhcCCcHHHHHhccCCC-----HHHHHHHHHHHHHHhcC-ChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHH
Q 000184 490 AITAAGGIPPLVQILESGS-----AKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNH 563 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~~~-----~~~~e~a~~aL~~L~~~-~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~ 563 (1890)
.+.++...--|.-+|+..+ +..|-...++++.|... +++.-..+.+...+|..++.++.|+.-.|..|.-++.+
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998877777776552 45677889999999873 34566777889999999999999999999999999988
Q ss_pred HhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHH-HhcCCCHHHHHHHHHHHHH
Q 000184 564 LIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK-ILSSTKEETQAKSASALAG 642 (1890)
Q Consensus 564 L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~-lL~s~~~~~~~~A~~aL~~ 642 (1890)
+-.+++. |.++...++-... -...+..++. +.+.+++.+-++..++-..
T Consensus 166 IL~dd~G---------------------------L~yiC~t~eRf~a---v~~vL~~mV~~l~~~pS~RLLKhIIrCYlR 215 (262)
T PF04078_consen 166 ILLDDVG---------------------------LNYICQTAERFFA---VAMVLNKMVEQLVKQPSPRLLKHIIRCYLR 215 (262)
T ss_dssp HHHSHHH---------------------------HHHHTSSHHHHHH---HHHHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HHcchhH---------------------------HHHHhcCHHHHHH---HHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 8653211 1122222221111 1223444444 4567899999999999999
Q ss_pred HhhcChhHHHHHH
Q 000184 643 IFETRKDLRESSI 655 (1890)
Q Consensus 643 L~~~~~~~~~~~~ 655 (1890)
|+.+ +..++++.
T Consensus 216 Lsdn-prar~aL~ 227 (262)
T PF04078_consen 216 LSDN-PRAREALR 227 (262)
T ss_dssp HTTS-TTHHHHHH
T ss_pred HccC-HHHHHHHH
Confidence 9986 45555443
No 181
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.91 E-value=1.3e+02 Score=40.41 Aligned_cols=187 Identities=18% Similarity=0.138 Sum_probs=120.7
Q ss_pred cCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchh-hhcCChH
Q 000184 76 SGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIF-STEGVVP 154 (1890)
Q Consensus 76 ~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~-~~~g~ip 154 (1890)
+..+.+|..|.++++..|+-+-... ...+.+.-|.++....+.++-..-..+|..+..- |.. +.. .++-+.|
T Consensus 502 ~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~---dpe--f~as~~skI~P 574 (1005)
T KOG2274|consen 502 DVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL---DPE--FAASMESKICP 574 (1005)
T ss_pred CCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc---Chh--hhhhhhcchhH
Confidence 4556799999999999983332111 1224455666776666677766666777665551 221 222 2344455
Q ss_pred HHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCC----HHHHHHHHHHHHHHhhcCchh
Q 000184 155 VLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQ----SSTQAHVCFLLACMMEEDVSV 230 (1890)
Q Consensus 155 ~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~----~~v~~~a~~~L~~L~~~~~~~ 230 (1890)
....+. ....+||++...+--++..++...+.+.. + ....+|.+++.|..++ .....-+..+|.......++.
T Consensus 575 ~~i~lF-~k~s~DP~V~~~~qd~f~el~q~~~~~g~-m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~p 651 (1005)
T KOG2274|consen 575 LTINLF-LKYSEDPQVASLAQDLFEELLQIAANYGP-M-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP 651 (1005)
T ss_pred HHHHHH-HHhcCCchHHHHHHHHHHHHHHHHHhhcc-h-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC
Confidence 555444 44557788877777777777743222211 2 2346999999999876 566677777887677666655
Q ss_pred hhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHH
Q 000184 231 CSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD 272 (1890)
Q Consensus 231 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~ 272 (1890)
.....-.-+.|++.+..-++.|.++...+..||+.+-....+
T Consensus 652 L~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~e 693 (1005)
T KOG2274|consen 652 LPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLE 693 (1005)
T ss_pred ccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHH
Confidence 555555667888888877767788999999999998875443
No 182
>PRK09169 hypothetical protein; Validated
Probab=86.87 E-value=2.1e+02 Score=42.86 Aligned_cols=92 Identities=22% Similarity=0.163 Sum_probs=48.6
Q ss_pred cccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCccchhHHHhcCcHHHHHHHHhcCCcchhHH-HHHHHHHHhhcCHH
Q 000184 1155 RKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEE-AATDLLGILFSSAE 1233 (1890)
Q Consensus 1155 ~~~i~~Lv~~L~~~~~~~~~~~~A~~~L~~la~~~~~~r~~i~eag~l~~Lv~~L~~~~~~~q~~-a~~~ll~~l~~~~~ 1233 (1890)
...+..|.+.|+++++...-.....|.-+++.. ....-.++-.+..+++.|+.=+...... +...+-..|..++.
T Consensus 122 ~~~~a~l~n~lsK~~d~~aC~~a~a~ia~q~~~----~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~ 197 (2316)
T PRK09169 122 LAQLAHLGNKLSKYPDRPACMAAIAWIAGQLLD----ALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSR 197 (2316)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHH
Confidence 555667788888887755222223333333322 1122233556888888888854444333 33344445667777
Q ss_pred HHHhhhhcCcHHHHHHHH
Q 000184 1234 IRRHESAFAAVSQLVAVL 1251 (1890)
Q Consensus 1234 ~~~~~~~~g~i~~Lv~lL 1251 (1890)
....+ +...+..++..|
T Consensus 198 l~~al-~~q~va~~lnal 214 (2316)
T PRK09169 198 LLQAM-DAQEVANALNAL 214 (2316)
T ss_pred HHHhc-chHHHHHHHHHH
Confidence 66543 333444444444
No 183
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.83 E-value=43 Score=40.69 Aligned_cols=217 Identities=11% Similarity=0.085 Sum_probs=143.6
Q ss_pred ccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhh-----HHHHHHc--ccHHHHHHHHccCCcHHHHHHHHHHHhhch
Q 000184 1659 EVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTS-----AEAMAES--GAIEALLELLRSHQCEETAARLLEVLLNNG 1731 (1890)
Q Consensus 1659 ~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~-----~~~i~~~--g~i~~Li~lL~~~~~~~~a~~al~~L~~~~ 1731 (1890)
.+.++.|+..|..-+.+.|..+.....++-...... ...+.+. ..+..|+.-.+.+..--.+..-+..-.-.+
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 347888999999999999999999888887654333 3344433 456666666666544444455555555577
Q ss_pred hhhhhhhccccccccccccCChHHHHHHHHHHHH---HhcchhhhhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHH
Q 000184 1732 KIRESKATKSAILPLSQYLLDPQTQAQQARLLAT---LALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAIC 1808 (1890)
Q Consensus 1732 ~~r~~i~~~~~i~~L~~~~~~~~~~~~~~~~la~---l~~~~~~~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~ 1808 (1890)
.+-+.++....+..+.+|...+...+.+.+.-.+ +..-.....+ +. ..-...+.....++|++. ++-+|+.+++
T Consensus 155 ~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~-fl-~~n~d~ff~~~~~Ll~s~-NYvtkrqslk 231 (335)
T PF08569_consen 155 SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAE-FL-SNNYDRFFQKYNKLLESS-NYVTKRQSLK 231 (335)
T ss_dssp HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHH-HH-HHTHHHHHHHHHHHCT-S-SHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHH-HH-HHHHHHHHHHHHHHccCC-CeEeehhhHH
Confidence 7777788877888888888766655544433222 2222222222 11 000113567788899996 9999999999
Q ss_pred HHHHhhcCCchhH---HHHHhcCcHHHHHHHhCCCCCCchHHHHHHHHHHhccchhhHhhhHHHHHHHHHHHH
Q 000184 1809 ALQNLVMYSRSNK---RAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEYASSETVRAITGKIT 1878 (1890)
Q Consensus 1809 aL~~l~~~~~~~~---~~~~~~g~v~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 1878 (1890)
-|..+....++.. +++.+...+..+..++++.....++-|--+.+.+-.|+.=-.-|.+=+++|=+++++
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~ 304 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLR 304 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 9999995555443 666799999999999999888899999999999999986556677777777776665
No 184
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.80 E-value=1.3e+02 Score=40.63 Aligned_cols=441 Identities=16% Similarity=0.129 Sum_probs=210.6
Q ss_pred ccCCcHHHHHhhhhhcccccCccccccHHHHHHhcCCC------CCCCCchHHHHHHHHHHhhcC--ccchhHHHhcCcH
Q 000184 1131 VRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPI------PDRPGAPFLALGFLIQLAKDC--PSNKIVMVEAGAL 1202 (1890)
Q Consensus 1131 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Lv~~L~~~------~~~~~~~~~A~~~L~~la~~~--~~~r~~i~eag~l 1202 (1890)
...|+.++++.++...+-+...+-.+.++.+++.+..+ .+....+-+|+.+++.|++.= +..-.-++|.=.+
T Consensus 385 ~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv 464 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV 464 (1010)
T ss_pred cCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence 34688899999998888887888888999999999833 234445678888888776321 1122244555456
Q ss_pred HHHHHHHhcCCcchhHHHHHHHHHHh---hcCHHHHHhhhhcCcHHHHHHHHh-cCChhHHHHHHHHHHHhhccch-hhh
Q 000184 1203 EALTKYLSLGPQDATEEAATDLLGIL---FSSAEIRRHESAFAAVSQLVAVLR-LGGRGARYSAAKALESLFSADH-IRN 1277 (1890)
Q Consensus 1203 ~~Lv~~L~~~~~~~q~~a~~~ll~~l---~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~r~~Aa~aL~~L~~~~~-~r~ 1277 (1890)
..+...+++.....+..|+..+.... ++++.+-. .++......|. +.+..+|..||-||..+-++.. ...
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~-----~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS-----EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH-----HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 66666677765666777776654432 35555543 46666777777 6778899999999998865333 223
Q ss_pred hhhh--cCChHHHHHHhccCChHHHHHHHHHHH-HHhccCchhhHHHHhhhCChHHHHHHHHhh--cCChhhHHHHHHHH
Q 000184 1278 AESA--RQAVQPLVEILNTGLEREQHAAIAALV-RLLSENPSRALAVADVEMNAVDVLCRILSS--NCSMELKGDAAELC 1352 (1890)
Q Consensus 1278 ~i~~--~~~i~~Lv~lL~~~~~~~~~~A~~aL~-~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~--~~~~~~~~~a~~~l 1352 (1890)
.+.. .+..+.|+.+.+.-..+.-...+..+. ..++ +-.+.... .-........+++.. ..++...+.+..+.
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fse--ElsPfA~e-L~q~La~~F~k~l~~~~~~~~~~ddk~iaA~ 616 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSE--ELSPFAVE-LCQNLAETFLKVLQTSEDEDESDDDKAIAAS 616 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH--hhchhHHH-HHHHHHHHHHHHHhccCCCCccchHHHHHHH
Confidence 3332 233344444444332222222222211 1111 11111100 001233334444442 11112222222222
Q ss_pred HHh----------hCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcC
Q 000184 1353 GVL----------FGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYG 1421 (1890)
Q Consensus 1353 ~~L----------~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~ 1421 (1890)
+.| -+.+++...+ ....++..-.+|.+.-.+.-+.+.+....+. ..++..-.+ .|.++.+.+.+++
T Consensus 617 GiL~Ti~Til~s~e~~p~vl~~l-e~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 617 GILRTISTILLSLENHPEVLKQL-EPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQD 693 (1010)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhh
Confidence 222 1222222111 1222233333344443444455555554444 222222222 4455666666665
Q ss_pred CcHhHHHHHHHHHHHhccCChhhHHHHHHcC----cHHHHHHHhcc--CChhHHHHHHHHHHHHHhcccccCCccccCCh
Q 000184 1422 RNYMLHEAISRALVKLGKDRPSCKLEMVKAG----VIESVLDILHE--APDFLCSAFAELLRILTNNAGIAKGPSAAKVV 1495 (1890)
Q Consensus 1422 ~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~----~i~~L~~lL~~--~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v 1495 (1890)
....--....-+|-|..+.... ..+.... +.+.+.+.|.+ ..+.-++.++.++..+.-+.++. -...+
T Consensus 694 ~~~dyf~d~~~~l~N~vt~g~~--~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~----~dq~i 767 (1010)
T KOG1991|consen 694 DGIDYFTDMMPALHNYVTYGTP--SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGL----LDQYI 767 (1010)
T ss_pred hhHHHHHHHHHHHhhheeeCch--hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCc----HhhHh
Confidence 5544445555566555443211 1111111 33344444544 33444666777776665544431 11256
Q ss_pred HHHHHHh----hccCCChhhHHHHHHHHHHh-hcCCCcccccccccCCc----hhhhhh----ccCCCCHHHHHHHHHHH
Q 000184 1496 EPLFLLL----TRSEFGPDGQHSALQVLVNI-LEHPQCRADYSLTSHQA----IEPLIP----LLDSPAPAVQQLAAELL 1562 (1890)
Q Consensus 1496 ~~Li~lL----~~~~~~~~v~~~al~aL~nl-~~~~~~~~~~~~~~~~~----i~~Lv~----lL~s~~~~vq~~A~~aL 1562 (1890)
++++++. .+.......+.-+++...|. ...|.-...+ ....|. .+.... ..+.-|..+...++.+|
T Consensus 768 plf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~i-Le~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tl 846 (1010)
T KOG1991|consen 768 PLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGI-LENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTL 846 (1010)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHH-HHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7666654 33222345566677755444 3333322111 112221 222222 23333445555566666
Q ss_pred HHhhcccccccchhccCcHHHHHHHhcC
Q 000184 1563 SHLLLEEQLQKDPVTQQVIGPLIRVLGS 1590 (1890)
Q Consensus 1563 ~~l~~~~~~~~~l~~~~~i~~Lv~lL~s 1590 (1890)
-.+...+..-..... +..+.++.++.+
T Consensus 847 i~l~~~~~~~~e~l~-~l~~~lv~L~~~ 873 (1010)
T KOG1991|consen 847 ISLGQDPQLPSEVLG-QLGPALVELLLS 873 (1010)
T ss_pred HhccccCCchHHHHH-HHHHHHHHHHHH
Confidence 555433333222222 444556655543
No 185
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.55 E-value=96 Score=38.68 Aligned_cols=146 Identities=15% Similarity=0.120 Sum_probs=80.7
Q ss_pred chhhhhhccCC---CCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHh----cCCCHHHHHHHHHHHHHHhccCh
Q 000184 1539 AIEPLIPLLDS---PAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL----GSGIHILQQRAVKALVSIALTWP 1611 (1890)
Q Consensus 1539 ~i~~Lv~lL~s---~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL----~s~~~~v~~~A~~aL~~l~~~~~ 1611 (1890)
+-..+.+++.+ ..+.-+.....-++.+.....+. +.|.+..++..+ .+.+..+|.-|+++|++.+.--|
T Consensus 215 ~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~----~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P 290 (533)
T KOG2032|consen 215 MGKILAQLLSSITSEKENGRITDIAFFAELKRPKELD----KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAP 290 (533)
T ss_pred HHHHHhhcccccchhcccchHHHHHHHHHHhCccccc----ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCc
Confidence 34445555543 33333444444455554433322 456665555544 46677899999999999988766
Q ss_pred hHHHhhcC--hHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhh--chh--hhcccchHHHHHhhccCChhHHHHHHHHHH
Q 000184 1612 NEIAKEGG--VTELSKIILQADPSLPHALWESAASVLSSILQF--SSE--FYLEVPVAVLVRLLRSGSEGTVIGSLNALL 1685 (1890)
Q Consensus 1612 ~~l~~~g~--I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~--~~~--~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~ 1685 (1890)
.....|+- ++.++.-|-+.+. .....+ +...|.-+... +.+ .+.....-.+..+..+.++.+|-+|..+..
T Consensus 291 ~kv~th~~~~ldaii~gL~D~~~--~~V~le-am~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg 367 (533)
T KOG2032|consen 291 DKVRTHKTTQLDAIIRGLYDDLN--EEVQLE-AMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFG 367 (533)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCc--cHHHHH-HHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHH
Confidence 66555522 2344444443322 222333 44444333211 111 111223445667788999999999999988
Q ss_pred HhhcCC
Q 000184 1686 VLESDD 1691 (1890)
Q Consensus 1686 ~L~~~~ 1691 (1890)
.|..-.
T Consensus 368 ~L~~l~ 373 (533)
T KOG2032|consen 368 ALAKLA 373 (533)
T ss_pred HHHHHc
Confidence 887633
No 186
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.50 E-value=15 Score=44.28 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=107.5
Q ss_pred CHHHHH-HHhhcCChhHHHHHHHHHHHHhcCCCC---CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHH---
Q 000184 538 AVPALL-WLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE--- 610 (1890)
Q Consensus 538 ~i~~Lv-~ll~~~~~~~~~~Aa~aL~~L~~~~~~---~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~--- 610 (1890)
.+..|+ ..+++.++.+++.|..+|+-+|--+.. ..++.+...+..+++.++..++.++..+....+....-..
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 444444 567788899999999999988875543 3344566667677888999999999887765443221110
Q ss_pred --hhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHH-cCchHHHHHhhc----CCCHHHHHHHHHHHH
Q 000184 611 --GSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-VKTLWSVMKLLD----VGSECILVEASRCLA 683 (1890)
Q Consensus 611 --~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~-~g~i~~Lv~lL~----~~~~~v~~~a~~aL~ 683 (1890)
.......+..+.+++.+.++++|..|+..++.|.-.+. +.. ...+..|+.+.- .++.. .++++...-
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~-----i~~~~~vL~~Lll~yF~p~t~~~~~-LrQ~L~~Ff 180 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR-----ISDPPKVLSRLLLLYFNPSTEDNQR-LRQCLSVFF 180 (298)
T ss_pred CccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHcCcccCCcHH-HHHHHHHHH
Confidence 11224457788889999999999999999999887632 112 344555544442 22233 444444444
Q ss_pred HHHccCchhhHHHHHhCCChHHHHHHhCCCC
Q 000184 684 AIFLSVRENREVAAVARDALSPLVVLAGSPV 714 (1890)
Q Consensus 684 ~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~ 714 (1890)
.........++. .+...+++.+..+.+.+.
T Consensus 181 p~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 181 PVYASSSPENQE-RLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHcCCHHHHH-HHHHHHHHHHHHHHhCcc
Confidence 443333323333 466778888888776654
No 187
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.41 E-value=4.8 Score=49.54 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=99.4
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHh-ccCCCHHHHHHHHHHHHHHhcCChHHHHHHHh
Q 000184 457 LLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQI-LESGSAKAKEDSASILRNLCNHSEDIRACVES 535 (1890)
Q Consensus 457 ~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~ 535 (1890)
.+-+++.+.++-+|...+..+..--.+... .|+|..|+.. .+++++++|+.|+.+|+-+|.++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------- 583 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------- 583 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecC---------
Confidence 444677778888888766554432222221 3567777776 66778889999999999888863
Q ss_pred CCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCC-CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhh
Q 000184 536 ADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDT-ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSA 613 (1890)
Q Consensus 536 ~g~i~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~~-~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 613 (1890)
...++..+++|.. .++.++--.+-+|.-.|..... .++.-|-.++.+..+-+++.|..+++-.+.-.+.. +.. .
T Consensus 584 ~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp---~ 659 (926)
T COG5116 584 RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE-LNP---N 659 (926)
T ss_pred cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc-cCh---h
Confidence 3456666776654 5778888888888877765543 34444555666667778888888877554422211 000 0
Q ss_pred hcchHHHHHHHhcCCCHHHHHH
Q 000184 614 ANDAVETMIKILSSTKEETQAK 635 (1890)
Q Consensus 614 ~~~~i~~Lv~lL~s~~~~~~~~ 635 (1890)
-.+.+..+.+++.+.+++....
T Consensus 660 v~~I~k~f~~vI~~Khe~glak 681 (926)
T COG5116 660 VKRIIKKFNRVIVDKHESGLAK 681 (926)
T ss_pred HHHHHHHHHHHHhhhhHhHHHH
Confidence 1234667777776665554443
No 188
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.10 E-value=60 Score=37.99 Aligned_cols=179 Identities=14% Similarity=0.171 Sum_probs=107.4
Q ss_pred CCcHHHHHhccCC--CHHHHHHHHHHHHHHhcCC-------hHHHHHHHhCCCHHHHHHHhhcCC----hhHHHHHHHHH
Q 000184 495 GGIPPLVQILESG--SAKAKEDSASILRNLCNHS-------EDIRACVESADAVPALLWLLKNGS----ANGKEIAAKTL 561 (1890)
Q Consensus 495 g~i~~Lv~lL~~~--~~~~~e~a~~aL~~L~~~~-------~~~r~~i~~~g~i~~Lv~ll~~~~----~~~~~~Aa~aL 561 (1890)
|..+-+..++-.| ++...+.+...|..|.... .+.|-.+.=.+.+|.++.-+.+++ .......|..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4555555555554 5667777888888888632 113333333456688888777776 24456778899
Q ss_pred HHHhcCCCCCcHHHHHHHHh-cCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHH
Q 000184 562 NHLIHKSDTATISQLTALLT-SDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 640 (1890)
Q Consensus 562 ~~L~~~~~~~~i~~L~~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL 640 (1890)
..+|.......+..+..... ....+.......+...+..-. .++ .+...+-.|..+|.++.+.+|.....+|
T Consensus 140 a~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f-~P~------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 140 AQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF-FPD------HEFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred HHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-Cch------hHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99987655455555444433 233222222222333222211 011 0123477788999999999999999999
Q ss_pred HHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000184 641 AGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 685 (1890)
Q Consensus 641 ~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 685 (1890)
..+....+-.+. .....+.|+.+++.++.- .+|+..|-.+
T Consensus 213 ~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~~ 252 (262)
T PF14225_consen 213 KVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDEI 252 (262)
T ss_pred HHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHHH
Confidence 999987432221 444579999999987664 4444444443
No 189
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=85.92 E-value=23 Score=43.84 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=58.1
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhhHHHHhcCcHH
Q 000184 378 FKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMA-TNEVQEELVRALLKLCNNEGSLWRALQGREGIQ 456 (1890)
Q Consensus 378 l~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~ 456 (1890)
++++.+..+|+.++..|+.-..+++.+..+...|.++.++..+... +...--.++.++..+-......-..+.+.....
T Consensus 30 l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ 109 (361)
T PF07814_consen 30 LESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLR 109 (361)
T ss_pred cccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHH
Confidence 3344455579999999999999999999999999999999999533 332444444454444333233333344555667
Q ss_pred HHHHhhC
Q 000184 457 LLISLLG 463 (1890)
Q Consensus 457 ~Lv~lL~ 463 (1890)
.++.+++
T Consensus 110 ll~~Ll~ 116 (361)
T PF07814_consen 110 LLLKLLK 116 (361)
T ss_pred HHHHHhc
Confidence 7788887
No 190
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.66 E-value=25 Score=46.25 Aligned_cols=179 Identities=13% Similarity=0.055 Sum_probs=109.4
Q ss_pred HHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCCh
Q 000184 1249 AVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNA 1328 (1890)
Q Consensus 1249 ~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~ 1328 (1890)
.-+.++-...|-++.+.|..+.+...-...+...+.+...++.|++.+..+=..|..++..|++-- ...+
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy----------~e~i 803 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY----------PEDI 803 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc----------chhh
Confidence 344555567888888888888775555666777888999999999998888888999888888621 2356
Q ss_pred HHHHHH-HHhhcCCh--hhHHHHHHHHHHhhC-ChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc--CCchH
Q 000184 1329 VDVLCR-ILSSNCSM--ELKGDAAELCGVLFG-NTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV--DDEQL 1402 (1890)
Q Consensus 1329 v~~L~~-lL~~~~~~--~~~~~a~~~l~~L~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~--~~~~~ 1402 (1890)
++-|.+ +.+..... ..+-.+-+++..+.. -.+...+..+ ..+....+..++++..-|.+++..++++| .+-..
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 777776 44432111 111111112211111 1111111111 33344456667777778999999999998 22111
Q ss_pred HHHHHHcCChHHHHHhhc-CCcHhHHHHHHHHHHHhccC
Q 000184 1403 AELVAAHGAVIPLVGLLY-GRNYMLHEAISRALVKLGKD 1440 (1890)
Q Consensus 1403 ~~~~~~~gav~~L~~lL~-~~~~~vr~~A~~aL~~l~~~ 1440 (1890)
.+.+ ..++..++.+.+ ++..-+||+|+..+..+-.+
T Consensus 883 sd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 883 SDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 1222 233455566655 78889999999888766654
No 191
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.46 E-value=35 Score=41.96 Aligned_cols=173 Identities=17% Similarity=0.187 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccC-CCHHHHHHHHHHHHHHhcCChHHHHHHHh--CCCHHHHH
Q 000184 467 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALL 543 (1890)
Q Consensus 467 ~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~e~a~~aL~~L~~~~~~~r~~i~~--~g~i~~Lv 543 (1890)
.+-+..|..=|-.+........+.-.-...+..+++.|.+ .++..++.|..+|..++...+ .| +.+ .-+|..++
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-~~--l~DstE~ai~K~L 377 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-AR--LFDSTEIAICKVL 377 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-Hh--hhchHHHHHHHHH
Confidence 3445555553444433343333332222356677888887 688889999999999998532 22 111 23566677
Q ss_pred HHhhcCChhHHHHHHHH-HHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHH
Q 000184 544 WLLKNGSANGKEIAAKT-LNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMI 622 (1890)
Q Consensus 544 ~ll~~~~~~~~~~Aa~a-L~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv 622 (1890)
+.-++..+.+...|... +.-++.+.+...|..+..++...++.....++..+..+....+.+++.. .+ .+..|.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~-ll--~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLN-LL--PDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHH-hh--hhhhhHHH
Confidence 77777777766666644 5555666655666666666666666655566666665555444444322 22 45689999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhh
Q 000184 623 KILSSTKEETQAKSASALAGIFE 645 (1890)
Q Consensus 623 ~lL~s~~~~~~~~A~~aL~~L~~ 645 (1890)
+.-.+.+..+|..|+.+|..+..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHH
Confidence 99999999999999999988875
No 192
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.45 E-value=15 Score=48.55 Aligned_cols=149 Identities=12% Similarity=0.058 Sum_probs=105.9
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhH
Q 000184 615 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 694 (1890)
Q Consensus 615 ~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 694 (1890)
...+|.|++..++..-..|..=..+|.++-.+-|...-.--.....|.|++.|.-+|..++..+..++.-+....+....
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 45589999988765555666666777777765443211112334678888888889999989999988777654433332
Q ss_pred HHHHhCCChHHHHHHhCCCC---HHHHHHHHHHHHHHhc-CchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHH
Q 000184 695 VAAVARDALSPLVVLAGSPV---LEVAEQATCALANLIL-DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAA 765 (1890)
Q Consensus 695 ~~~~~~~~v~~Lv~ll~~~~---~ev~~~aa~aL~nL~~-~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~a 765 (1890)
. .-...+|.++.+-.+++ -.||+.|...|..|.. -|.........+++.+|.+.+.+.-.-+|++|+.+
T Consensus 946 ~--~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 946 E--HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred H--HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2 33567888888877766 4588999999988875 56666666678899999999888777789888765
No 193
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.40 E-value=6.8 Score=47.17 Aligned_cols=164 Identities=20% Similarity=0.172 Sum_probs=101.9
Q ss_pred HHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCh-hHHHH---
Q 000184 578 ALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK-DLRES--- 653 (1890)
Q Consensus 578 ~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~-~~~~~--- 653 (1890)
..+++.++.+++.+.+|||-.+-+.... ....++.+...+..+++.++..|..++..+..... +.-+.
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~--------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKEL--------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 4567888899999999999655444311 12347888888888899999999999998876532 11111
Q ss_pred ----HHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHh-CCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000184 654 ----SIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPVLEVAEQATCALANL 728 (1890)
Q Consensus 654 ----~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~-~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL 728 (1890)
......+..+...+.+.+++++..++..++.|..... +.. ...+..|+-+-.++..+-..+-..+|...
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~------i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR------ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 1123467777888888899999999999999876543 222 34555666555554322222333333333
Q ss_pred ----hcCchHHHHHHhcCcHHHHHHHHhcCC
Q 000184 729 ----ILDSEVSEKAIAEEIILPATRVLCEGT 755 (1890)
Q Consensus 729 ----~~~~~~~~~~~~~~~v~~L~~ll~~~~ 755 (1890)
+.........+....++.+..+.+...
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 233333444445555555555544443
No 194
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.36 E-value=40 Score=37.97 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC-----CHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCCHH
Q 000184 467 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-----SAKAKEDSASILRNLCNHS-EDIRACVESADAVP 540 (1890)
Q Consensus 467 ~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~e~a~~aL~~L~~~~-~~~r~~i~~~g~i~ 540 (1890)
..-.++|...|.-+++ +++.|..+.++..---|-.+|... .+-.|-.+.++++.|...+ ++.-..+...++||
T Consensus 93 snRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 93 SNRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred cchHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 3344567777777775 799999999987666666666543 4567888999999999743 34555667889999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHH
Q 000184 541 ALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVET 620 (1890)
Q Consensus 541 ~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~ 620 (1890)
-.++.+..|+...|..|..++..+..++.. ..+++...-... .-...+..
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~G-----------------L~YiCqt~eRF~-------------av~~~L~k 221 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVG-----------------LYYICQTAERFS-------------AVALVLGK 221 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhcccc-----------------HHHHHHhHHHHH-------------HHHHHHHH
Confidence 999999999999999999999888653321 111111111000 00111333
Q ss_pred HH-HHhcCCCHHHHHHHHHHHHHHhhcChhHHHH
Q 000184 621 MI-KILSSTKEETQAKSASALAGIFETRKDLRES 653 (1890)
Q Consensus 621 Lv-~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~ 653 (1890)
++ .+.+.+++.+-.+..++..+|+.+ +..|.+
T Consensus 222 mv~~l~~~ps~RllKhviRcYlrLsdn-prar~a 254 (293)
T KOG3036|consen 222 MVFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAA 254 (293)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHH
Confidence 33 355678999999999999999985 455543
No 195
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=85.17 E-value=3.5 Score=45.54 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHH---------------hcCcHHHHHHhhCC------CCHHHHHHHHHHHHHcccCC
Q 000184 426 EVQEELVRALLKLCNNEGSLWRALQ---------------GREGIQLLISLLGL------SSEQQQECSVALLCLLSNEN 484 (1890)
Q Consensus 426 ~v~~~a~~aL~~L~~~~~~~~~~i~---------------~~g~i~~Lv~lL~~------~~~~v~~~A~~aL~nL~~~~ 484 (1890)
..-..++..|.|++.........+. +...+..|++++.. ....-..+.+.+|.|+++ .
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~ 88 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-L 88 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-C
Confidence 3445566677777765333221111 12246778886654 234455678999999995 8
Q ss_pred hhcHHHHHhc--CC--cHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhC---CCHHHHHHHh
Q 000184 485 DDSKWAITAA--GG--IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESA---DAVPALLWLL 546 (1890)
Q Consensus 485 ~~~~~~i~~~--g~--i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~---g~i~~Lv~ll 546 (1890)
++.|+.+.+. +. +..|+-+++..+..-|..++.+|.|+|.+.+.. ..+... +.+|.|+--+
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPL 156 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPL 156 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhc
Confidence 9999999854 33 677777888888888889999999999864434 444432 4444444333
No 196
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=84.80 E-value=42 Score=37.80 Aligned_cols=144 Identities=14% Similarity=0.130 Sum_probs=99.7
Q ss_pred HHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc-----CCCHHHHHHHHHHHHHhhccCch-hhHHHHhcCcHHHHHHhh
Q 000184 389 RTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-----MATNEVQEELVRALLKLCNNEGS-LWRALQGREGIQLLISLL 462 (1890)
Q Consensus 389 ~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-----~~~~~v~~~a~~aL~~L~~~~~~-~~~~i~~~g~i~~Lv~lL 462 (1890)
.|+.-|-.++..|+.+..+.++...-.+-..|. .+.+..|..+++.+..|..+++. ....+...+.+|..++.+
T Consensus 98 naL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim 177 (293)
T KOG3036|consen 98 NALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM 177 (293)
T ss_pred HHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence 344444455889999888887766555555554 34567888999999999877554 344566789999999999
Q ss_pred CCCCHHHHHHHHHHHHHcccCChhcHHHHH----h----cCCcHH-HHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 000184 463 GLSSEQQQECSVALLCLLSNENDDSKWAIT----A----AGGIPP-LVQILESGSAKAKEDSASILRNLCNHSEDIRACV 533 (1890)
Q Consensus 463 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~----~----~g~i~~-Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i 533 (1890)
..+++..+..|..++..+-. ++..-..+. . ...+.. +.++.+.+++..-.++..+..+|+. ++..|..+
T Consensus 178 e~GSelSKtvA~fIlqKIll-dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL 255 (293)
T KOG3036|consen 178 ESGSELSKTVATFILQKILL-DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAAL 255 (293)
T ss_pred hcccHHHHHHHHHHHHHHhh-ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 99999999999999988874 333211111 0 112222 3345566788999999999999997 57777654
Q ss_pred H
Q 000184 534 E 534 (1890)
Q Consensus 534 ~ 534 (1890)
.
T Consensus 256 ~ 256 (293)
T KOG3036|consen 256 R 256 (293)
T ss_pred H
Confidence 3
No 197
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.55 E-value=15 Score=49.46 Aligned_cols=169 Identities=17% Similarity=0.160 Sum_probs=96.2
Q ss_pred ChHHHHHhhcCCcHhHHHHHHHHHHHhccC--ChhhHHHHHHcCcHHHHHHHhcc----CChhHHHHHHHHHHHHHhccc
Q 000184 1411 AVIPLVGLLYGRNYMLHEAISRALVKLGKD--RPSCKLEMVKAGVIESVLDILHE----APDFLCSAFAELLRILTNNAG 1484 (1890)
Q Consensus 1411 av~~L~~lL~~~~~~vr~~A~~aL~~l~~~--~~~~~~~l~~~~~i~~L~~lL~~----~~~~v~~~aa~~l~~L~~~~~ 1484 (1890)
++..+.+++..+.....+ |...|..+... .|... .+..+.+++.. ....+...+.-.++.+....-
T Consensus 396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e-------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE-------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH-------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH-------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 466677777764443333 33334443332 12221 45556666643 223344444444444433221
Q ss_pred cc----------CCccccCChHHHHHHhhcc--CCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCC--
Q 000184 1485 IA----------KGPSAAKVVEPLFLLLTRS--EFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSP-- 1550 (1890)
Q Consensus 1485 ~~----------~~~~~~~~v~~Li~lL~~~--~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~-- 1550 (1890)
.. ......+.++.|...+... ..+.+.+.-++++|+|+ .....++.|..++.+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~------------g~~~~i~~l~~~i~~~~~ 535 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL------------GHPESIPVLLPYIEGKEE 535 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------------T-GGGHHHHHTTSTTSS-
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc------------CCchhhHHHHhHhhhccc
Confidence 11 2333556677777777621 11246667799999999 6778899999999877
Q ss_pred -CHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000184 1551 -APAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLG--SGIHILQQRAVKALVSI 1606 (1890)
Q Consensus 1551 -~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~--s~~~~v~~~A~~aL~~l 1606 (1890)
...+|..|+++|.++... ....+.+.|..+.. +.++++|..|...|..-
T Consensus 536 ~~~~~R~~Ai~Alr~~~~~-------~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 536 VPHFIRVAAIQALRRLAKH-------CPEKVREILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp S-HHHHHHHHHTTTTGGGT--------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhhc-------CcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 788999999999988541 11234466777664 47788999988877764
No 198
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=82.87 E-value=1.1e+02 Score=36.14 Aligned_cols=230 Identities=13% Similarity=0.180 Sum_probs=155.8
Q ss_pred hhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHH----HH-HHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000184 612 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR----ES-SIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 686 (1890)
Q Consensus 612 ~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~----~~-~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 686 (1890)
+..++..+.|+.-+....-+.+..+.....++-+..-..+ +. ......+..|+.. ....+++...+-..+..-.
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~-~~~~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG-YENTPEIALTCGNMLRECI 153 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh-hccchHHHHHHHHHHHHHH
Confidence 4557778899999988888899998888887765422111 11 1122234444444 1113555554444444333
Q ss_pred ccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh-cCchHHHHHHhcCc----HHHHHHHHhcCCcchHHH
Q 000184 687 LSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI-LDSEVSEKAIAEEI----ILPATRVLCEGTISGKTL 761 (1890)
Q Consensus 687 ~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~-~~~~~~~~~~~~~~----v~~L~~ll~~~~~~~~~~ 761 (1890)
++ ...++. +....-+......+..+.-++...|..+.-.++ .++....++...+- .+.-.+++++++--++++
T Consensus 154 rh-e~Laki-iL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 154 RH-EFLAKI-ILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred hh-HHHHHH-HHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 33 224444 677778888888888899899999999998887 34555555554333 333566778888789999
Q ss_pred HHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhh
Q 000184 762 AAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITP 841 (1890)
Q Consensus 762 aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 841 (1890)
+...|..++-++++...|..|+.....++-++.+|++++..+. .+|+.+.--+..+. .--.+
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ-~eAFhvFKvfvAnp-----------------nK~q~ 293 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQ-LEAFHVFKVFVANP-----------------NKPQP 293 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccch-HHHHHHHHHHhcCC-----------------CCCch
Confidence 9999999999999999999999888999999999999998888 88877665553222 22345
Q ss_pred HHhHhhcCChhHHHHHHHHHHHHhc
Q 000184 842 IVSSIADATPLLQDKAIEILSRLCR 866 (1890)
Q Consensus 842 l~~~l~~~~~~~~~~a~~~L~~l~~ 866 (1890)
+..+|..+++ +..+.+..++.
T Consensus 294 V~~IL~~Nr~----KLl~~l~~f~~ 314 (342)
T KOG1566|consen 294 VRDILVRNRP----KLLELLHDFHT 314 (342)
T ss_pred HHHHHHhCcH----HHHHHHHHhCC
Confidence 6667776554 44455665643
No 199
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=82.77 E-value=3.5 Score=44.26 Aligned_cols=134 Identities=14% Similarity=0.082 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHh-cCcHHHHHHhh
Q 000184 384 FLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG-REGIQLLISLL 462 (1890)
Q Consensus 384 ~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL 462 (1890)
..+|..+..++..+. +..+... ..-+-+.+-..+..++.+....++.++..+-...++....+.. .|.++.++.+.
T Consensus 19 ~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 19 EEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp CCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 336888888888773 1111111 1112233444454444456778888888888887777777764 45578899999
Q ss_pred C--CCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccC-CCHH-HHHHHHHHHHHH
Q 000184 463 G--LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAK-AKEDSASILRNL 522 (1890)
Q Consensus 463 ~--~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~-~~e~a~~aL~~L 522 (1890)
. ..+..++..++.+|..-|. ++.++..+...+++-|-++++. +++. +|..|+.+|..|
T Consensus 96 ~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred hcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 8 7889999999999988873 4444444455589999999964 4565 788888887653
No 200
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.58 E-value=30 Score=46.11 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=95.5
Q ss_pred CchhhhhhccCC----CCHHHHHHHHHHHHHhhcc----cccccchhccCcHHHHHHHhc----CCCHHHHHHHHHHHHH
Q 000184 1538 QAIEPLIPLLDS----PAPAVQQLAAELLSHLLLE----EQLQKDPVTQQVIGPLIRVLG----SGIHILQQRAVKALVS 1605 (1890)
Q Consensus 1538 ~~i~~Lv~lL~s----~~~~vq~~A~~aL~~l~~~----~~~~~~l~~~~~i~~Lv~lL~----s~~~~v~~~A~~aL~~ 1605 (1890)
..+..+..++++ +.+.++..+.-+++.+... .+.+........++.|.+.|. ..+.+.+...++||+|
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 345556666653 3566778888777777652 110001112345566666663 4667778889999999
Q ss_pred HhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhcc--CChhHHHHHHHH
Q 000184 1606 IALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRS--GSEGTVIGSLNA 1683 (1890)
Q Consensus 1606 l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~--~~~~v~~~a~~a 1683 (1890)
++... .+..+...+. ++......+...|+.+|++++.... +...+.|+....+ .+.++|.+|...
T Consensus 473 ~g~~~--------~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p----~~v~~~l~~i~~n~~e~~EvRiaA~~~ 539 (574)
T smart00638 473 AGHPS--------SIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDP----RKVQEVLLPIYLNRAEPPEVRMAAVLV 539 (574)
T ss_pred cCChh--------HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCc----hHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 98753 3455555555 4444555666668888887652211 2356667777654 467889888765
Q ss_pred HHHhhcCChhhHHHHHHcccHHHHHHHHccCCcHHHHHHHH
Q 000184 1684 LLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLL 1724 (1890)
Q Consensus 1684 L~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~~~~~~a~~al 1724 (1890)
|..- +|+ ...++.+.+.+......+++.-..
T Consensus 540 lm~t---~P~-------~~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 540 LMET---KPS-------VALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHhc---CCC-------HHHHHHHHHHHhhcCcHHHHHHhH
Confidence 5532 222 234555666665544444444333
No 201
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=82.37 E-value=5.8 Score=42.56 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=92.2
Q ss_pred HHHHHHHhh-cCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHH
Q 000184 1330 DVLCRILSS-NCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVA 1407 (1890)
Q Consensus 1330 ~~L~~lL~~-~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~ 1407 (1890)
+.++..|.. ..+++++..+.-++..+. +..........-+.+-.++..++.+....+..++..++ ..++....++
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 344555543 234578888777776663 22222223333334444555555667888889999998 7777766665
Q ss_pred -HcCChHHHHHhhc--CCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCC-hh-HHHHHHH
Q 000184 1408 -AHGAVIPLVGLLY--GRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAP-DF-LCSAFAE 1474 (1890)
Q Consensus 1408 -~~gav~~L~~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~-~~-v~~~aa~ 1474 (1890)
..|..+.+..+.. ..+..++..++.+|..-+.+. .+|.. +-.++++.|.+++..++ +. ++..++-
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~-~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK-SCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH-HHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH-HHHHH-HHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 4688889999999 899999999999999998883 55544 44557888989896554 43 4544443
No 202
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=80.92 E-value=68 Score=40.20 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=114.1
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhcCCCH----HHHHHHHHHHHHHhcCCCCC
Q 000184 65 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSA----EGQIAAAKTIYAVSQGGAKD 140 (1890)
Q Consensus 65 g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~a~~aL~~ls~~~~~~ 140 (1890)
.....+..++.+++...|..+...|.+++.+..--..+....++..|.++..+++. +....+..|+..+-..+.
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-- 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-- 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce--
Confidence 44556888999999999999999999999888888888888889999999987765 334344444443332111
Q ss_pred ccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 000184 141 YVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 220 (1890)
Q Consensus 141 ~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 220 (1890)
..=+ .+....|-....+.+ ....+..+-..++..|.++....+..+..+.+.--++.|+..+...+..++..|...+
T Consensus 161 -vsW~-~~~~~fV~~~a~~V~-~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~ 237 (713)
T KOG2999|consen 161 -VSWE-SVSNDFVVSMASYVN-AKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALL 237 (713)
T ss_pred -eeee-ecccHHHHHHHHHHh-hhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHH
Confidence 0000 111111222233332 2223334555677888888877777777788888999999999999999999888877
Q ss_pred HHHhhcCc-hhhhHhhccchHHHHHH
Q 000184 221 ACMMEEDV-SVCSRVLAADATKQLLK 245 (1890)
Q Consensus 221 ~~L~~~~~-~~~~~i~~~g~i~~Lv~ 245 (1890)
-.+....+ +.+..+.+.-....+..
T Consensus 238 nal~~~a~~~~R~~~~~~l~~~~~R~ 263 (713)
T KOG2999|consen 238 NALFRKAPDDKRFEMAKSLEQKQFRN 263 (713)
T ss_pred HHHHhhCChHHHHHHHHHHHHHHHHH
Confidence 65553322 23444444333333333
No 203
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.89 E-value=2.5e+02 Score=39.06 Aligned_cols=101 Identities=18% Similarity=0.239 Sum_probs=71.0
Q ss_pred CChHHHHHHHHHHHHHh-cchhhhhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCc
Q 000184 1751 LDPQTQAQQARLLATLA-LGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGG 1829 (1890)
Q Consensus 1751 ~~~~~~~~~~~~la~l~-~~~~~~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~ 1829 (1890)
+||..+.-+..+++=+. ++.. +| .+.++.|+..|+-.|++-+|-+++-|++.++-..++-.+...
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~-----fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T---- 1000 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAE-----FC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWT---- 1000 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHH-----HH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhh----
Confidence 56666654333333332 3322 44 357899999999667999999999999999844444444333
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHhccc--hhhHhhh
Q 000184 1830 VQVVLDLIGSSDPETSVQAAMFVKLLFSNH--TIQEYAS 1866 (1890)
Q Consensus 1830 v~~L~~ll~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~ 1866 (1890)
+.|...+...++..+.+|..++..|--|. ++|+|++
T Consensus 1001 -~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~ 1038 (1251)
T KOG0414|consen 1001 -EHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLS 1038 (1251)
T ss_pred -HHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHH
Confidence 45777888889999999999999887776 5667764
No 204
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.84 E-value=27 Score=45.87 Aligned_cols=183 Identities=17% Similarity=0.109 Sum_probs=116.2
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccch
Q 000184 67 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKI 146 (1890)
Q Consensus 67 v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~ 146 (1890)
...-+..+.++...+|.++.+.|..+.++.+.+..+...+.+..++.+|+++|+=+-..|.+.+..++.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce----------- 797 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE----------- 797 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-----------
Confidence 344566667777789999999999999766666667777899999999999988776666666666666
Q ss_pred hhhcCChHHHHHH-HhccCCCCch----HH---HHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHH
Q 000184 147 FSTEGVVPVLWEQ-LKNGLKSGNV----VD---NLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCF 218 (1890)
Q Consensus 147 ~~~~g~ip~L~~l-l~~~~~~~~~----v~---~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~ 218 (1890)
+-.+.++|.|.+. .+......+. |- .....+++.|+. .++. -.+...+...++++...|..++.
T Consensus 798 vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~---~y~~-----~Li~tfl~gvrepd~~~RaSS~a 869 (982)
T KOG4653|consen 798 VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF---KYKA-----VLINTFLSGVREPDHEFRASSLA 869 (982)
T ss_pred hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH---HHHH-----HHHHHHHHhcCCchHHHHHhHHH
Confidence 2345667888874 4333222122 11 112223333321 1222 23556666777788888999999
Q ss_pred HHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhc
Q 000184 219 LLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDH 269 (1890)
Q Consensus 219 ~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~ 269 (1890)
.|+.++.........+ -...+.-++.+.+.+...-+|+.|+..+..+-.+
T Consensus 870 ~lg~Lcq~~a~~vsd~-~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 870 NLGQLCQLLAFQVSDF-FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHHHHHhhhhhHH-HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 9988873221111111 1223445566666666678999999999888764
No 205
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.50 E-value=2.9e+02 Score=39.55 Aligned_cols=146 Identities=13% Similarity=0.186 Sum_probs=100.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHH
Q 000184 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1890)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 490 (1890)
+++..++..+..+...+|..|++||..+....+... .....-..+..-+.+....||++|+..++......++.-..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 456777888888889999999999999887654311 11122334444566778899999999999776555654333
Q ss_pred HHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhc---CChhHHHHHHHHHHHHhcC
Q 000184 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---GSANGKEIAAKTLNHLIHK 567 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~---~~~~~~~~Aa~aL~~L~~~ 567 (1890)
.. ..++.-..+....+|.++..+++.+|...|+.-. .+....++++. ....+++.+..++.+++..
T Consensus 893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 32 2344445667788999999999999987665432 22344455543 3334899999999999987
Q ss_pred CCC
Q 000184 568 SDT 570 (1890)
Q Consensus 568 ~~~ 570 (1890)
+.+
T Consensus 962 p~~ 964 (1692)
T KOG1020|consen 962 PVP 964 (1692)
T ss_pred CCC
Confidence 655
No 206
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=79.70 E-value=8.3 Score=43.22 Aligned_cols=85 Identities=20% Similarity=0.134 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhhCCCccchhhhhcCc-------HHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhhHHHH-hcCcHH
Q 000184 386 VQERTIEALASLYGNPLLSIKLENSEA-------KRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQ-GREGIQ 456 (1890)
Q Consensus 386 ~~~~a~~aL~~L~~~~~~~~~l~~~g~-------i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~~i~-~~g~i~ 456 (1890)
-|+.|+++|++|+-.+.|..-+...+- ...|++++. .+++..|+.|+-.|.+|+..+...+..+. +.+.|.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 499999999999776666665555543 344555554 56889999999999999998777776664 567799
Q ss_pred HHHHhhCCCCHHHH
Q 000184 457 LLISLLGLSSEQQQ 470 (1890)
Q Consensus 457 ~Lv~lL~~~~~~v~ 470 (1890)
.|+.++++.....+
T Consensus 220 ~Li~FiE~a~~~~~ 233 (257)
T PF12031_consen 220 HLIAFIEDAEQNAH 233 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999986644433
No 207
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=79.32 E-value=11 Score=41.89 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=73.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHH-hhccCchhhHHHHhcCcHHHHHHhhCC---------CCHHHHHHHHHHHHHcc
Q 000184 412 AKRLLVGLITMATNEVQEELVRALLK-LCNNEGSLWRALQGREGIQLLISLLGL---------SSEQQQECSVALLCLLS 481 (1890)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~a~~aL~~-L~~~~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~v~~~A~~aL~nL~ 481 (1890)
....++..++...... ..+..|.. |-..+....+.+++.||+..|+++|.. .+...+..++.||..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3444566665543322 23333333 223333455677888999999998852 35578888999999998
Q ss_pred cCChhcHHHHH-hcCCcHHHHHhccCCCHHHHHHHHHHHHHHh
Q 000184 482 NENDDSKWAIT-AAGGIPPLVQILESGSAKAKEDSASILRNLC 523 (1890)
Q Consensus 482 ~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~ 523 (1890)
. +..+...+. ..+++..++..|.+++..++..++.+|..+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 5 556555555 5789999999999999999999999998887
No 208
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.16 E-value=2.6e+02 Score=38.18 Aligned_cols=615 Identities=12% Similarity=0.063 Sum_probs=292.6
Q ss_pred CCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCCCCc--cc--------c
Q 000184 77 GSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQGGAKDY--VG--------S 144 (1890)
Q Consensus 77 ~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~ls~~~~~~~--~~--------~ 144 (1890)
.++..|..|=.-|-.+-|.+ |-++.+++...++. ..+|.+|+--|+|.-.-.-+++ .| .
T Consensus 16 ~d~~~R~~AE~~L~q~~K~p---------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~d 86 (1010)
T KOG1991|consen 16 SDAKERKAAEQQLNQLEKQP---------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEED 86 (1010)
T ss_pred CChHHHHHHHHHHHHhhcCC---------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChHH
Confidence 34555555555555554333 56677777776543 3457777766777433111121 11 1
Q ss_pred chhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhc-cCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000184 145 KIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS-TSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 223 (1890)
Q Consensus 145 ~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~-~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L 223 (1890)
|..+++.+++.++.. +..++.....+|.++- .+.++.|. |.++..-.+|++++.....-+.-+|..+
T Consensus 87 k~~irenIl~~iv~~-------p~~iRvql~~~l~~Ii~~D~p~~Wp-----~l~d~i~~~Lqs~~~~~vy~aLl~l~qL 154 (1010)
T KOG1991|consen 87 KAVIRENILETIVQV-------PELIRVQLTACLNTIIKADYPEQWP-----GLLDKIKNLLQSQDANHVYGALLCLYQL 154 (1010)
T ss_pred HHHHHHHHHHHHHhC-------chHHHHHHHHHHHHHHhcCCcccch-----hHHHHHHHHhcCcchhhHHHHHHHHHHH
Confidence 234444444444432 3346666667775544 45667887 5578899999999999999999999988
Q ss_pred hhcCc----hhhh---HhhccchHHH----HHHHHcCCCC--HhHHHHHHHHHHHhhhcCHHHHHHHHhcCChH----HH
Q 000184 224 MEEDV----SVCS---RVLAADATKQ----LLKLLGSGNE--ASVRAEAAGALKSLSDHCKDARREIAGSNGIP----AM 286 (1890)
Q Consensus 224 ~~~~~----~~~~---~i~~~g~i~~----Lv~lL~~~~~--~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~----~L 286 (1890)
+...+ +.+. .++ ....|. ..+++..++. .+......++.+.++..+ --..+...+-+. ..
T Consensus 155 ~k~ye~k~~eeR~~l~~~v-~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~--LP~~L~~~~~f~~W~~l~ 231 (1010)
T KOG1991|consen 155 FKTYEWKKDEERQPLGEAV-EELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYE--LPLELSAPETFTSWMELF 231 (1010)
T ss_pred HHHHhhccccccccHHHHH-HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHh--CCHHhhCchhHHHHHHHH
Confidence 83322 1111 222 122333 3445555432 455666676666665432 112223333332 23
Q ss_pred HHhhcCCCc-cccc-------hhhhHHHHHHHHHHHHHhhC--CCchhhhhhhccccCCCChhhhhh--hHhHHHHHHHH
Q 000184 287 INATIAPSK-EFMQ-------GEYAQALQENAMCALANISG--GLSNVISSLGQSLESCSSPAQVAD--TLGALASALMI 354 (1890)
Q Consensus 287 v~ll~~~~~-~~~~-------~~~~~~l~e~a~~aL~nl~~--~~~~~i~~l~~~~~~~~~~~~~~~--~~gal~~ll~~ 354 (1890)
+.++..+-+ |.+. .-..-.+..+|+..|.++.. |.+..... +...+..-... ..|.++-.+..
T Consensus 232 l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~-----~y~~Fa~~f~~n~~~~ile~~lk~ 306 (1010)
T KOG1991|consen 232 LSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVP-----EYKEFAQMFLKNFAQGILEVFLKI 306 (1010)
T ss_pred HHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccch-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333321 1111 11234577889888888765 22111110 00000000000 02333333333
Q ss_pred hccccc---------------------CCC---CCCh---hhhHHHHHhhcCCCCC----------hHHHH---------
Q 000184 355 YDSKAE---------------------STK---PSDP---LIVEQTLVNQFKPRLP----------FLVQE--------- 388 (1890)
Q Consensus 355 ~~~~~~---------------------~~~---~~~~---~~i~~~L~~ll~~~~~----------~~~~~--------- 388 (1890)
+.+... ... ...| .-+..++..++...+. +.+|+
T Consensus 307 l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~ 386 (1010)
T KOG1991|consen 307 LEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGY 386 (1010)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccC
Confidence 221111 000 0001 0112222222222111 00000
Q ss_pred ---HHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc--------CCCHHHHHHHHHHHHHhhcc---CchhhHHHHhcCc
Q 000184 389 ---RTIEALASLYGNPLLSIKLENSEAKRLLVGLIT--------MATNEVQEELVRALLKLCNN---EGSLWRALQGREG 454 (1890)
Q Consensus 389 ---~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~--------~~~~~v~~~a~~aL~~L~~~---~~~~~~~i~~~g~ 454 (1890)
.|+..+......... +=.-.+.++.++..+. ..++.-++-|++.+++++.- +..++ ...+.=.
T Consensus 387 sp~~Aa~~~l~~~~~KR~--ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~fl 463 (1010)
T KOG1991|consen 387 SPDTAALDFLTTLVSKRG--KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFL 463 (1010)
T ss_pred CCcHHHHHHHHHHHHhcc--hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHH
Confidence 011111000000000 0001245666777775 23556677888888888742 11122 2222233
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 000184 455 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRACV 533 (1890)
Q Consensus 455 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~e~a~~aL~~L~~~~~~~r~~i 533 (1890)
++.+...++++..-+|..|||.+..++..+-.....+ ..+.....+.|. +.+-.++-.|+-||..+-.+.+.....+
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 5677778889999999999999999984222221111 225555666666 6677889899999999988655554434
Q ss_pred Hh--CCCHHHHHHHhhcCChhHHHH-HHHHHHHHhcCCCC-------CcHHHHHHHHhc---CCcchHHHHHHHHHHHh-
Q 000184 534 ES--ADAVPALLWLLKNGSANGKEI-AAKTLNHLIHKSDT-------ATISQLTALLTS---DLPESKVYVLDALKSML- 599 (1890)
Q Consensus 534 ~~--~g~i~~Lv~ll~~~~~~~~~~-Aa~aL~~L~~~~~~-------~~i~~L~~lL~~---~~~~~~~~a~~aL~~L~- 599 (1890)
.. .+.+..|+.+.+.-.-+.... --..++..+..-.| .-...+..++.. .++.....++.|+|.|-
T Consensus 542 ~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 542 SAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 33 233344444444422111111 11111111111111 112233444442 23333333444444332
Q ss_pred ------hhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHH
Q 000184 600 ------SVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSEC 673 (1890)
Q Consensus 600 ------~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~ 673 (1890)
++.+.+++++.. +.-.+|.+-..|.+.-.+.-+.+.....+++-..+++. ...=|..+.+.+.+.....+
T Consensus 622 i~Til~s~e~~p~vl~~l--e~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Is--p~mW~ll~li~e~~~~~~~d 697 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQL--EPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEIS--PIMWGLLELILEVFQDDGID 697 (1010)
T ss_pred HHHHHHHHhccHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccC--HHHHHHHHHHHHHHhhhhHH
Confidence 244566554432 12235555556666666666666666666655443332 11224566667777777777
Q ss_pred HHHHHHHHHHHHHccCch-hhHHHHHhCCChHHHHHHhCCCC--HHHHHHHHHHHHHHh
Q 000184 674 ILVEASRCLAAIFLSVRE-NREVAAVARDALSPLVVLAGSPV--LEVAEQATCALANLI 729 (1890)
Q Consensus 674 v~~~a~~aL~~L~~~~~~-~~~~~~~~~~~v~~Lv~ll~~~~--~ev~~~aa~aL~nL~ 729 (1890)
.-...+-++.|...-... ..+......-.+...-.++.+.+ .+-.+.|+..+.-++
T Consensus 698 yf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~ii 756 (1010)
T KOG1991|consen 698 YFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVII 756 (1010)
T ss_pred HHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 778888888887653321 11110111112223334555533 334455777776665
No 209
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=79.00 E-value=4.9 Score=38.60 Aligned_cols=83 Identities=18% Similarity=0.218 Sum_probs=63.4
Q ss_pred hhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcCh
Q 000184 1541 EPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGV 1620 (1890)
Q Consensus 1541 ~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I 1620 (1890)
...+..|.++.+.+|..|+..|.++....+ .........+..+...|.++++.+-.+|+++|..++...|.. ++
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~-----vl 79 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE-----VL 79 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH-----HH
Confidence 445667789999999999999999988665 222233456688888889999999999999999999877554 34
Q ss_pred HHHHHHHhh
Q 000184 1621 TELSKIILQ 1629 (1890)
Q Consensus 1621 ~~Ll~~l~~ 1629 (1890)
+.|++...+
T Consensus 80 ~~L~~~y~~ 88 (92)
T PF10363_consen 80 PILLDEYAD 88 (92)
T ss_pred HHHHHHHhC
Confidence 556665544
No 210
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=78.78 E-value=15 Score=40.78 Aligned_cols=105 Identities=11% Similarity=0.018 Sum_probs=72.6
Q ss_pred HHHHHHHHhccCchhhHHHHhhh--------------CChHHHHHHHHhhc-----CChhhHHHHHHHHHHhhCChhhHH
Q 000184 1303 AIAALVRLLSENPSRALAVADVE--------------MNAVDVLCRILSSN-----CSMELKGDAAELCGVLFGNTRIRS 1363 (1890)
Q Consensus 1303 A~~aL~~L~~~~~~~~~~~~~v~--------------~g~v~~L~~lL~~~-----~~~~~~~~a~~~l~~L~~~~~~~~ 1363 (1890)
++..|.|++........++. .. ...+..|+..+..+ +...-....+.++.|+.+.+++|.
T Consensus 15 ~~MLLsNlT~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~ 93 (192)
T PF04063_consen 15 ACMLLSNLTRSDSGCEKLLQ-LKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQ 93 (192)
T ss_pred HHHHHHHhccchHHHHHHHh-cccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHH
Confidence 66666777664444443322 11 23667777777651 223456778899999999999998
Q ss_pred HHHhhC--c--hHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHH
Q 000184 1364 TVAAAR--C--VEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAA 1408 (1890)
Q Consensus 1364 ~~~~~~--~--i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 1408 (1890)
.+.... . +..|+.++...+..-|..++.+|.|+|.+...-..+..
T Consensus 94 ~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~ 142 (192)
T PF04063_consen 94 FFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLS 142 (192)
T ss_pred HHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcC
Confidence 887643 3 67888888888888889999999999966555555544
No 211
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=77.95 E-value=30 Score=43.16 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=109.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCH----HHHHHHHHHHHHcccCChhc
Q 000184 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSE----QQQECSVALLCLLSNENDDS 487 (1890)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~~A~~aL~nL~~~~~~~ 487 (1890)
....+.+.+.+++...|..+...|..++.+ +.....++...|+..|..++.+++. ++......+++.+-.+ .-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh-gvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH-GVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh-cee
Confidence 445677888899999898899999999887 5677888899999999999998754 4444455555555422 112
Q ss_pred HHHHHhcCCcHHHHHhccCC--CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 000184 488 KWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 565 (1890)
Q Consensus 488 ~~~i~~~g~i~~Lv~lL~~~--~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 565 (1890)
.+..+...+|.....+..-. +..+-..|...|.++...++..+..+.++--+..|+..++.++......|...+-.|-
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 22223333444444444322 4456678889999998877788999999999999999999998888887555554444
Q ss_pred c
Q 000184 566 H 566 (1890)
Q Consensus 566 ~ 566 (1890)
.
T Consensus 242 ~ 242 (713)
T KOG2999|consen 242 R 242 (713)
T ss_pred h
Confidence 3
No 212
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=77.92 E-value=2.1e+02 Score=38.52 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=131.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCC-----CCcHHHHHHH
Q 000184 506 SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK-NGSANGKEIAAKTLNHLIHKSD-----TATISQLTAL 579 (1890)
Q Consensus 506 ~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~-~~~~~~~~~Aa~aL~~L~~~~~-----~~~i~~L~~l 579 (1890)
+..|..--++.|++...+.....+...+. -.+...+..+. +..+-++-.|.++++..|...- |..+.-+..+
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~ql 538 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQL 538 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHH
Confidence 44666666788888876653222222111 11223333333 3455678888888887774221 3444555555
Q ss_pred HhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHh--cCCCHHHHHHHHHHHHHHhhcChhHHHHHHHc
Q 000184 580 LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL--SSTKEETQAKSASALAGIFETRKDLRESSIAV 657 (1890)
Q Consensus 580 L~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL--~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~ 657 (1890)
..+...++.....++|+.+++..+... ....+...|.++.+. .+.+|.+-..+-.++-.+++. ..+..-...
T Consensus 539 as~~s~evl~llmE~Ls~vv~~dpef~----as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~m~e 612 (1005)
T KOG2274|consen 539 ASKSSDEVLVLLMEALSSVVKLDPEFA----ASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI--AANYGPMQE 612 (1005)
T ss_pred cccccHHHHHHHHHHHHHHhccChhhh----hhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH--HHhhcchHH
Confidence 566667788888889988887664322 223345577777754 456776666666666666663 222334455
Q ss_pred CchHHHHHhhcCCC----HHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHh-CCCCHHHHHHHHHHHHHHh
Q 000184 658 KTLWSVMKLLDVGS----ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA-GSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 658 g~i~~Lv~lL~~~~----~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll-~~~~~ev~~~aa~aL~nL~ 729 (1890)
..||.++..+..+. ....--++..|..+.+..+.+-...+ -+-++|++.++. ++.+.++-..+..+|..+.
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l-~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLL-ICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHH-HHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 67999999997655 44556666777667776655433323 355788888865 4556677788888888876
No 213
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=77.47 E-value=3.5e+02 Score=38.80 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=68.7
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhh-hHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHH
Q 000184 196 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVC-SRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 274 (1890)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~ 274 (1890)
+.+..++..|.++...+|..|.+||..+...++... ..-+..+....+. ++...||+.|...++..-...++.-
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~-----DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN-----DSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc-----cchhHHHHHHHHHHhhhhhccHHHH
Confidence 457788888999999999999999998887776431 1222223222221 2346799999999986555455543
Q ss_pred HHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhC
Q 000184 275 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISG 319 (1890)
Q Consensus 275 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~ 319 (1890)
.+..+ .++.-+..+ +..++.++...++.+|.
T Consensus 891 ~qyY~-----~i~erIlDt---------gvsVRKRvIKIlrdic~ 921 (1692)
T KOG1020|consen 891 FQYYD-----QIIERILDT---------GVSVRKRVIKILRDICE 921 (1692)
T ss_pred HHHHH-----HHHhhcCCC---------chhHHHHHHHHHHHHHH
Confidence 33322 233333332 47789999999999886
No 214
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=76.55 E-value=12 Score=34.18 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhC
Q 000184 1299 EQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAAR 1369 (1890)
Q Consensus 1299 ~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~ 1369 (1890)
..+.|++|+++++.++.....+ -+.++++.++++....+...++..+--+|+.++.+.++...+.+.|
T Consensus 3 ~lKaaLWaighIgss~~G~~lL---~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLL---DESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHH---hhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 3577999999999977776666 2568999999999988888999999999999999988876655443
No 215
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.17 E-value=77 Score=39.98 Aligned_cols=103 Identities=16% Similarity=0.077 Sum_probs=73.6
Q ss_pred ChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc---CCchHH
Q 000184 1327 NAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV---DDEQLA 1403 (1890)
Q Consensus 1327 g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~---~~~~~~ 1403 (1890)
|.+..+++.+.+ ++..|+.....++..+..+-.-.......+-+..|.+.+-+..+.+|..|+.+|+++- .+++++
T Consensus 91 ~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 566666666655 4667888888888887666433334445567788888888899999999999999987 444433
Q ss_pred HHHHHcCChHHHHHhhc-CCcHhHHHHHHHHHHHhccC
Q 000184 1404 ELVAAHGAVIPLVGLLY-GRNYMLHEAISRALVKLGKD 1440 (1890)
Q Consensus 1404 ~~~~~~gav~~L~~lL~-~~~~~vr~~A~~aL~~l~~~ 1440 (1890)
. +..|..+++ +++.+||+.|. .++.-+
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr~al---lni~vd 197 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRRLAL---LNISVD 197 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHHHHH---HHeeeC
Confidence 3 457777777 78889999876 455544
No 216
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=75.80 E-value=1.9e+02 Score=35.77 Aligned_cols=157 Identities=15% Similarity=0.073 Sum_probs=97.0
Q ss_pred hhhcchHHHHHHHhcCC-------CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhc-CCCHH------HHHH
Q 000184 612 SAANDAVETMIKILSST-------KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSEC------ILVE 677 (1890)
Q Consensus 612 ~~~~~~i~~Lv~lL~s~-------~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~------v~~~ 677 (1890)
+-+.-|.+.+-+++.+. +...+..+...|+-+|+.. +....-.....||.|.+.+. ..+++ +...
T Consensus 52 vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p-ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d 130 (698)
T KOG2611|consen 52 VFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP-ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLED 130 (698)
T ss_pred HHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh-hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHH
Confidence 44455788888888653 3446777888999999873 33222223467899998883 23333 6778
Q ss_pred HHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHH-HHHHHHHHHHHH----hcCchHHHHHHhcCcHHHHHHHHh
Q 000184 678 ASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLE-VAEQATCALANL----ILDSEVSEKAIAEEIILPATRVLC 752 (1890)
Q Consensus 678 a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~e-v~~~aa~aL~nL----~~~~~~~~~~~~~~~v~~L~~ll~ 752 (1890)
+-.+|..++... ...+.++..|+++.+.++-.-++-. -+.-+...+--+ -+.++....+.. .+..+.+-+.
T Consensus 131 ~Y~cL~~Va~~e--~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~ 206 (698)
T KOG2611|consen 131 CYECLYLVATAE--AGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFA 206 (698)
T ss_pred HHHHHHHHhcCC--chhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHH
Confidence 889999887764 4445578999999999765433221 222222222211 134444444432 2556666666
Q ss_pred cCCcchHHHHHHHHHHHhhcC
Q 000184 753 EGTISGKTLAAAAIARLLHSR 773 (1890)
Q Consensus 753 ~~~~~~~~~aa~aL~~L~~~~ 773 (1890)
..++..+.+..+.|..++...
T Consensus 207 ~~~~a~KfElc~lL~~vl~~~ 227 (698)
T KOG2611|consen 207 VLHNALKFELCHLLSAVLSSE 227 (698)
T ss_pred HhhhHHHHHHHHHHHHHHhCC
Confidence 777778888888888766543
No 217
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=75.63 E-value=49 Score=44.56 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=70.5
Q ss_pred CChHHHHHhhc----CCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHh
Q 000184 106 GCIPPLLGLLK----SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 181 (1890)
Q Consensus 106 g~i~~Lv~lL~----~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L 181 (1890)
..++.|...|. .++.+.+..+.+||+|+.. ...+|.|...+.........++..|..+|+.+
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~ 551 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRL 551 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------------chhhHHHHhHhhhccccchHHHHHHHHHHHHH
Confidence 45667777665 4566778889999999865 12456777766665445566888888889877
Q ss_pred ccCChhHHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHH
Q 000184 182 STSTEGFWAATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEA 259 (1890)
Q Consensus 182 ~~~~~~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A 259 (1890)
....+... .+.|.++.... +.++|..|...| +..+++ ...+..+...+...++.++....
T Consensus 552 ~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~l---m~~~P~-------~~~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 552 AKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLIL---MRCNPS-------PSVLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp GGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHH---HHT----------HHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHH---HhcCCC-------HHHHHHHHHHHhhCchHHHHHHH
Confidence 64443222 46777777764 456776666555 333331 23356667777665554454433
No 218
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=75.21 E-value=52 Score=36.12 Aligned_cols=111 Identities=21% Similarity=0.234 Sum_probs=75.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcC---------------chHH----HHHhh-cCCCHHHHHHHH
Q 000184 620 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVK---------------TLWS----VMKLL-DVGSECILVEAS 679 (1890)
Q Consensus 620 ~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g---------------~i~~----Lv~lL-~~~~~~v~~~a~ 679 (1890)
.+--+++++++++|..|+.+|..|-.+.+.+-....+.+ .+.. |+..+ .+.+..+..+.+
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 333456888999999999999999888765443333222 1222 33333 455777899999
Q ss_pred HHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000184 680 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 730 (1890)
Q Consensus 680 ~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~ 730 (1890)
.++..+....|+..=..-.-...+..+..++.+.+.+++..+..++..+..
T Consensus 124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999988876321111123345555577888999999999999988863
No 219
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.16 E-value=43 Score=44.62 Aligned_cols=199 Identities=17% Similarity=0.116 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcC----CHHHHHHHHHHHHHhh
Q 000184 18 TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG----SLAVKIQAATVLGSLC 93 (1890)
Q Consensus 18 ~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~----~~~~~~~aa~~L~~L~ 93 (1890)
|...+..+.+.+.+..-++.+....+..+......+. ...+..+..+++++ .+.++..|.-+++.+.
T Consensus 355 T~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt---------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv 425 (574)
T smart00638 355 TPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT---------EEILKALFELAESPEVQKQPYLRESALLAYGSLV 425 (574)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC---------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHH
Confidence 4445666666666654444444455555555544321 23445566666643 2234444444555443
Q ss_pred ----ccchhhHHHHhcCChHHHHHhhc----CCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCC
Q 000184 94 ----KENELRVKVLLGGCIPPLLGLLK----SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK 165 (1890)
Q Consensus 94 ----~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~ 165 (1890)
.+.+.+........++.|...|. .++.+.+..+.+||+|+... ..++.|...+.....
T Consensus 426 ~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--------------~~i~~l~~~l~~~~~ 491 (574)
T smart00638 426 RRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--------------SSIKVLEPYLEGAEP 491 (574)
T ss_pred HHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh--------------hHHHHHHHhcCCCCC
Confidence 23222112222345677777664 34555666778888777551 224555555553333
Q ss_pred CCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHH
Q 000184 166 SGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQL 243 (1890)
Q Consensus 166 ~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~L 243 (1890)
..+.++..+..+|+.++...+.. .-+.|.++... .+.++|..|...| +..+++ ...+..+
T Consensus 492 ~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~l---m~t~P~-------~~~l~~i 553 (574)
T smart00638 492 LSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVL---METKPS-------VALLQRI 553 (574)
T ss_pred CCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHH---HhcCCC-------HHHHHHH
Confidence 44568888999999886433222 23567777765 3566777666665 333331 2335566
Q ss_pred HHHHcCCCCHhHHH
Q 000184 244 LKLLGSGNEASVRA 257 (1890)
Q Consensus 244 v~lL~~~~~~~~~~ 257 (1890)
...+....+..|+.
T Consensus 554 a~~l~~E~~~QV~s 567 (574)
T smart00638 554 AELLNKEPNLQVAS 567 (574)
T ss_pred HHHHhhcCcHHHHH
Confidence 66666654444433
No 220
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=75.10 E-value=1.9e+02 Score=39.16 Aligned_cols=177 Identities=16% Similarity=0.147 Sum_probs=105.7
Q ss_pred HHHHhhccCchhhHHHHhcCcHHHHHHhhCC-CCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcH--HHHHhccCCCH-
Q 000184 434 ALLKLCNNEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIP--PLVQILESGSA- 509 (1890)
Q Consensus 434 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~--~Lv~lL~~~~~- 509 (1890)
+|++...+++..++.+.+.||...+.+.++. ...+++..+.+.+.|++. ..+.+.......-+. .+-.++..-+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~-~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAE-VLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 8999999999999999999999999999985 467888999999999985 333322222111111 23333333333
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHH
Q 000184 510 KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKV 589 (1890)
Q Consensus 510 ~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~ 589 (1890)
+.-..++.+|..+..++++ . .+.+. +..+-..+......-.. ..
T Consensus 573 ersY~~~siLa~ll~~~~~-~---~~~~~---------------r~~~~~~l~e~i~~~~~--------------~~--- 616 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK-T---TECVF---------------RNSVNELLVEAISRWLT--------------SE--- 616 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc-C---ccccc---------------hHHHHHHHHHHhhccCc--------------cc---
Confidence 5556677777777664332 0 00111 11111111111000000 00
Q ss_pred HHHHHHHHHhhhcCchHHHHHhhhhcchHHH-HHHHhc-CCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh
Q 000184 590 YVLDALKSMLSVVSFSDILREGSAANDAVET-MIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL 667 (1890)
Q Consensus 590 ~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~-Lv~lL~-s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL 667 (1890)
..+..+.-+.+ +..++. +..+..+-.|.|++.++...+++.+..+...++++.+.+.-
T Consensus 617 --------------------~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 617 --------------------IRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred --------------------eeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 00001111223 444443 45677788999999999999998888888889988887665
No 221
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.76 E-value=1.2e+02 Score=38.28 Aligned_cols=173 Identities=16% Similarity=0.109 Sum_probs=103.8
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcC--ChHHH
Q 000184 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH--SEDIR 530 (1890)
Q Consensus 453 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~--~~~~r 530 (1890)
|.+..++..+.+++..+|..++..|+-++. .-.......-.|.+..|..-+-+..+.+|..|+.+|+.+-.. +++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 667888888899999999999999998873 333334455566777777777788889999999999988653 34444
Q ss_pred HHHHhCCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHH-HHHHHHHHhhhcCchHHH
Q 000184 531 ACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVY-VLDALKSMLSVVSFSDIL 608 (1890)
Q Consensus 531 ~~i~~~g~i~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~-a~~aL~~L~~~~~~~~~~ 608 (1890)
....|+.++++ ++.++++.| |.|+.- ++.+.|.+++--++-+...+.- -.++|-.+.......
T Consensus 170 -------~~n~l~~~vqnDPS~EVRr~a---llni~v--dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls--- 234 (885)
T COG5218 170 -------IVNLLKDIVQNDPSDEVRRLA---LLNISV--DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS--- 234 (885)
T ss_pred -------HHHHHHHHHhcCcHHHHHHHH---HHHeee--CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc---
Confidence 34467777776 455666654 555543 3445666655544433222211 122222111110000
Q ss_pred HHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 000184 609 REGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1890)
Q Consensus 609 ~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~ 646 (1890)
. ..-|..+-+-|.+....++.+++.+++.=-..
T Consensus 235 ----i-~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~ 267 (885)
T COG5218 235 ----I-DKRILLMEWGLLDREFSVKGALVDAIASAWRI 267 (885)
T ss_pred ----c-cceehhhhhcchhhhhhHHHHHHHHHHHHhcc
Confidence 0 11133444556666777888887777654433
No 222
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=73.73 E-value=35 Score=46.15 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=132.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh-cCCCHHHHHHHHHHHHHHHccCchhhHHH
Q 000184 618 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENREVA 696 (1890)
Q Consensus 618 i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~~~ 696 (1890)
-+.+-.-+.+.+..-|..|...+........ ........|.+..+.+.. .+.+..+...++.+|..|+..-+...+.
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~- 332 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK- 332 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-
Confidence 4556666778888889999988888877644 111111223344454444 5667788999999999998776544333
Q ss_pred HHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccc
Q 000184 697 AVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKID 776 (1890)
Q Consensus 697 ~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~ 776 (1890)
...+..+.++.-++.-..++++....++-.++- ......+.+.+...++.+++..+.++...+.+.++.....
T Consensus 333 -~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 333 -YAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred -HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 346788999999998888888877777765553 2223567788888999999999999988888888743310
Q ss_pred hhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCC
Q 000184 777 YTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGG 820 (1890)
Q Consensus 777 ~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~ 820 (1890)
- ...+ --.+.++.++...++.+.+|. ..|+.+++.+.+.++
T Consensus 406 ~-~~~~-t~~~l~p~~~~~~~D~~~~VR-~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 406 T-VEKE-TVKTLVPHLIKHINDTDKDVR-KAALEAVAAVMKVHG 446 (815)
T ss_pred C-cchh-hHHHHhHHHhhhccCCcHHHH-HHHHHHHHHHHHHhh
Confidence 0 0000 113677777888888888888 888888888866553
No 223
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.26 E-value=1.2e+02 Score=35.54 Aligned_cols=128 Identities=15% Similarity=0.099 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhcccccccchhc--cCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhh-
Q 000184 1554 VQQLAAELLSHLLLEEQLQKDPVT--QQVIGPLIRVLGS-GIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQ- 1629 (1890)
Q Consensus 1554 vq~~A~~aL~~l~~~~~~~~~l~~--~~~i~~Lv~lL~s-~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~- 1629 (1890)
.|......|..+..+ +...+.+ .+.+..+++..+. .+|.....+.+.+..+...++. ...++.+-+.+..
T Consensus 98 ~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~----~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 98 TRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI----SEFAEDLFDVFSCY 171 (262)
T ss_pred HHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc----chhHHHHHHHhhhe
Confidence 466666666666542 2222222 2456777777754 7899888999999888877752 2234566665543
Q ss_pred --------cCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHHHHHhhccCChhHHHHHHHHHHHhhc
Q 000184 1630 --------ADPSLPHALWESAASVLSSILQFSSEFYLEVPVAVLVRLLRSGSEGTVIGSLNALLVLES 1689 (1890)
Q Consensus 1630 --------~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 1689 (1890)
.++...+.--+ ....|.+.. .+...|.+-++|.|++-|.++...++.-+...|..-..
T Consensus 172 FPI~F~pp~~dp~~IT~ed-Lk~~L~~cl-~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 172 FPITFRPPPNDPYGITRED-LKRALRNCL-SSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred eeeeeeCCCCCCCCCCHHH-HHHHHHHHh-cCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 12222212112 223333333 22335556689999999999999999888877766443
No 224
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=73.15 E-value=6.7 Score=43.51 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=60.0
Q ss_pred hhhhcCChHHHHHHHhcc------CCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHH
Q 000184 146 IFSTEGVVPVLWEQLKNG------LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFL 219 (1890)
Q Consensus 146 ~~~~~g~ip~L~~ll~~~------~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~ 219 (1890)
.|+..|++..|.+.+... ...+...+..++.||+.+.....+....+...+++..|+..|.+++..++..++.+
T Consensus 102 ~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~lei 181 (187)
T PF06371_consen 102 EFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEI 181 (187)
T ss_dssp HH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 477888888888877542 22344577889999999997776666655678999999999999999999999999
Q ss_pred HHHHh
Q 000184 220 LACMM 224 (1890)
Q Consensus 220 L~~L~ 224 (1890)
|..++
T Consensus 182 L~~lc 186 (187)
T PF06371_consen 182 LAALC 186 (187)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97664
No 225
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=72.12 E-value=2.1e+02 Score=33.65 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhccCCh-------hhHHHHHHcCcHHHHHHHhccCC----hhHHHHHHHHHHHHHhcccccCCccccC
Q 000184 1425 MLHEAISRALVKLGKDRP-------SCKLEMVKAGVIESVLDILHEAP----DFLCSAFAELLRILTNNAGIAKGPSAAK 1493 (1890)
Q Consensus 1425 ~vr~~A~~aL~~l~~~~~-------~~~~~l~~~~~i~~L~~lL~~~~----~~v~~~aa~~l~~L~~~~~~~~~~~~~~ 1493 (1890)
..-+.+...|.++..... +.+-.+.=...+|.++.-+.+++ +..+...|+.+..++.... ..
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~ 149 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LP 149 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------Cc
Confidence 345666777777665521 12333333345666666666665 3456677777777775433 22
Q ss_pred ChHHHHHHhhccCCC--hhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhccccc
Q 000184 1494 VVEPLFLLLTRSEFG--PDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQL 1571 (1890)
Q Consensus 1494 ~v~~Li~lL~~~~~~--~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~ 1571 (1890)
.+..++....+..+. .+..+.....|.+-.- |+ .....+..|+++|...-+.+|......|..+-..-+.
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~ 221 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM 221 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC
Confidence 355555555544321 1222223333332200 11 2345678899999999999999999999999988777
Q ss_pred ccchhccCcHHHHHHHhcCCCHH
Q 000184 1572 QKDPVTQQVIGPLIRVLGSGIHI 1594 (1890)
Q Consensus 1572 ~~~l~~~~~i~~Lv~lL~s~~~~ 1594 (1890)
+.. ...+.+.||.++|.++.-.
T Consensus 222 ~~~-~~~dlispllrlL~t~~~~ 243 (262)
T PF14225_consen 222 RSP-HGADLISPLLRLLQTDLWM 243 (262)
T ss_pred CCC-cchHHHHHHHHHhCCccHH
Confidence 755 4456789999999875443
No 226
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=71.15 E-value=2 Score=30.67 Aligned_cols=27 Identities=30% Similarity=0.581 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhcc
Q 000184 1426 LHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHE 1463 (1890)
Q Consensus 1426 vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~ 1463 (1890)
||+.|+++|++++... +++.|++.|.+
T Consensus 1 VR~~Aa~aLg~igd~~-----------ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR-----------AIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-SHH-----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH-----------HHHHHHHHhcC
Confidence 6899999999999865 88899888753
No 227
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=71.01 E-value=34 Score=39.35 Aligned_cols=143 Identities=16% Similarity=0.099 Sum_probs=97.4
Q ss_pred HHHHHhhcCHHHHHhhhhcCcHHHHHHHHhcCCh-----hHHHHHHHHHHHhhc--cchhhhhhhhcCChHHHHHHhccC
Q 000184 1223 DLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGR-----GARYSAAKALESLFS--ADHIRNAESARQAVQPLVEILNTG 1295 (1890)
Q Consensus 1223 ~ll~~l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-----~~r~~Aa~aL~~L~~--~~~~r~~i~~~~~i~~Lv~lL~~~ 1295 (1890)
+++..+.++|+.|..+.++...--|...|+..+. ..|..+...++.|.. ..+.-......+.||.-++.+..+
T Consensus 72 aLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G 151 (262)
T PF04078_consen 72 ALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG 151 (262)
T ss_dssp HHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS
T ss_pred HHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc
Confidence 3556677899999888898987778888876653 467777777777775 344455556788999999999999
Q ss_pred ChHHHHHHHHHHHHHhccCchhhHHHHh------hhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHH
Q 000184 1296 LEREQHAAIAALVRLLSENPSRALAVAD------VEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVA 1366 (1890)
Q Consensus 1296 ~~~~~~~A~~aL~~L~~~~~~~~~~~~~------v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~ 1366 (1890)
++-.|..|...+.++-.++..-.++.+. | ..++..++.-+...++..+.+.+.++...|++++..+..+.
T Consensus 152 selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av-~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~ 227 (262)
T PF04078_consen 152 SELSKTVATFILQKILLDDVGLNYICQTAERFFAV-AMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR 227 (262)
T ss_dssp -HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHH-HHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHH-HHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999988755444443110 0 12344455555556677788888888888888888776654
No 228
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=70.90 E-value=99 Score=38.10 Aligned_cols=137 Identities=11% Similarity=0.097 Sum_probs=96.5
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHHhccC----chhhHHHHhhhCChHHHHHHHHhhc------CChhhHHHHHHHHHH
Q 000184 1285 VQPLVEILNTGLEREQHAAIAALVRLLSEN----PSRALAVADVEMNAVDVLCRILSSN------CSMELKGDAAELCGV 1354 (1890)
Q Consensus 1285 i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~----~~~~~~~~~v~~g~v~~L~~lL~~~------~~~~~~~~a~~~l~~ 1354 (1890)
...+..++...++++|-+|+.....+..+. .+++.++ ++-.-+.+-++|... +++..+.-+..+|..
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vf---eAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLac 89 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVF---EAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLAC 89 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHH---HHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 344777888888999999988888888744 2334443 444556677777532 344456667788888
Q ss_pred hhCChhhHHHHHhhCchHHHHHHHccC-ChH------HHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcH
Q 000184 1355 LFGNTRIRSTVAAARCVEPLVSLLVTE-FSP------AQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNY 1424 (1890)
Q Consensus 1355 L~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~------~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~ 1424 (1890)
.++.++...+.---..||.|..++..+ +++ +.+.+-+.|+..+..+......+..|.++.+.++-...+.
T Consensus 90 FC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~ 166 (698)
T KOG2611|consen 90 FCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDG 166 (698)
T ss_pred HhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCC
Confidence 899998887776678889999988743 222 5666777888888555555556699999999988774443
No 229
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.28 E-value=1.6e+02 Score=34.02 Aligned_cols=132 Identities=25% Similarity=0.270 Sum_probs=86.4
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcH
Q 000184 419 LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIP 498 (1890)
Q Consensus 419 lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~ 498 (1890)
+-+..+++.+...+.+|..++..+... ..-.++.|..+.+.+..+.+.-+...+..+-..++..- +.+.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~-----~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~ 77 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVC-----VPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQ 77 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccc-----hhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHH
Confidence 445678999999999999999875111 11235667777777777777777777887775332211 3344
Q ss_pred HHHHhc--------cCC--CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHh-hcCChhHHHHHHHHHHHHhc
Q 000184 499 PLVQIL--------ESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHLIH 566 (1890)
Q Consensus 499 ~Lv~lL--------~~~--~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll-~~~~~~~~~~Aa~aL~~L~~ 566 (1890)
.++..+ .++ .-+..-..+..+..+|...++ + -...++.+..++ ++.++..+..+..+|..||.
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~----g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-H----GVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-h----HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 444441 111 223333446788888886665 2 123578888888 77888899999999999985
No 230
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.41 E-value=22 Score=45.38 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=110.7
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHHh--hcCCCcccc-cccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhccccccc
Q 000184 1497 PLFLLLTRSEFGPDGQHSALQVLVNI--LEHPQCRAD-YSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQK 1573 (1890)
Q Consensus 1497 ~Li~lL~~~~~~~~v~~~al~aL~nl--~~~~~~~~~-~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~ 1573 (1890)
.|.+-|+-++ ..||.+|+..+.++ ..+|+.... ....-..-...|.++|+++.|.||..|..-+..+.. .+.+
T Consensus 178 ~l~R~L~a~N--s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s--~fWe 253 (1005)
T KOG1949|consen 178 ILWRGLKARN--SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITS--KFWE 253 (1005)
T ss_pred HHHHhhccCc--hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH--HHHH
Confidence 4556667777 88999999999988 455443222 100112335778899999999999999877776654 2222
Q ss_pred chhccCcHHHHHHHh----cCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHH----HHhhcCCCCcHHHHHHHHHH
Q 000184 1574 DPVTQQVIGPLIRVL----GSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSK----IILQADPSLPHALWESAASV 1645 (1890)
Q Consensus 1574 ~l~~~~~i~~Lv~lL----~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~----~l~~~~~~~~~~~~~~a~~~ 1645 (1890)
.+-..-..+.|-+.. .++..+||.....+|..+..++.. +|..+.++. .+.+....||.++.. .+..
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s----h~~le~~Lpal~~~l~D~se~VRvA~vd-~ll~ 328 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS----HPLLEQLLPALRYSLHDNSEKVRVAFVD-MLLK 328 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc----hhHHHHHHHhcchhhhccchhHHHHHHH-HHHH
Confidence 222221223333332 356779999999999999887743 333344444 455566778877766 4444
Q ss_pred HHhhhhhchhhhcc-cchHHHHHhhccCChhHHHHHHHHHHHhhc
Q 000184 1646 LSSILQFSSEFYLE-VPVAVLVRLLRSGSEGTVIGSLNALLVLES 1689 (1890)
Q Consensus 1646 l~~~~~~~~~~~~~-~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~ 1689 (1890)
+.++- ..-|-+ -+...++..|.+++-.+-+.-+..+.+...
T Consensus 329 ik~vr---a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 329 IKAVR---AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred HHhhh---hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 44432 111222 366777777777777775555556666554
No 231
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=66.33 E-value=4.2e+02 Score=35.02 Aligned_cols=286 Identities=15% Similarity=0.118 Sum_probs=144.1
Q ss_pred CcHHHHHHhhCC-----C---CHHHHHHHHHHHHHccc--CChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHH
Q 000184 453 EGIQLLISLLGL-----S---SEQQQECSVALLCLLSN--ENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNL 522 (1890)
Q Consensus 453 g~i~~Lv~lL~~-----~---~~~v~~~A~~aL~nL~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L 522 (1890)
|.++.+.+.|.. + +....+.|.+.++++.. ..+.-..-+.+.=.++.++-.+++...-.+.+++..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 677888888832 1 23334446666666553 1122222333333555666667788888889999999888
Q ss_pred hcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhc
Q 000184 523 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVV 602 (1890)
Q Consensus 523 ~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 602 (1890)
.. +.++...-..+......++++.+-.++-.|+-||.-+..+... ++...+++-..+..|+.+.
T Consensus 488 ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~-------------h~k~sahVp~tmekLLsLS 551 (970)
T COG5656 488 EE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQS-------------HEKFSAHVPETMEKLLSLS 551 (970)
T ss_pred HH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhh-------------hHHHHhhhhHHHHHHHHhc
Confidence 44 3333222233556667788887778899999999888775531 2223334444444444444
Q ss_pred CchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhc------CCCHHHHH
Q 000184 603 SFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD------VGSECILV 676 (1890)
Q Consensus 603 ~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~------~~~~~v~~ 676 (1890)
+.-++ .. -.+.+..+++.. +++++--|.....+|.+.- +..-..++. +..++-+.
T Consensus 552 n~fei-D~---LS~vMe~fVe~f---seELspfa~eLa~~Lv~qF------------lkiaq~l~ens~d~~s~vDDKqm 612 (970)
T COG5656 552 NTFEI-DP---LSMVMESFVEYF---SEELSPFAPELAGSLVRQF------------LKIAQSLLENSSDTSSVVDDKQM 612 (970)
T ss_pred ccccc-hH---HHHHHHHHHHHh---HHhhchhHHHHHHHHHHHH------------HHHHHHHHcCCccccccccHHHH
Confidence 33220 00 011123333322 2333333433333333210 000111111 11123455
Q ss_pred HHHHHHHHHHccCch-hhHHH---HHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh-cCchHHHHHHhcCcHHHHHHHH
Q 000184 677 EASRCLAAIFLSVRE-NREVA---AVARDALSPLVVLAGSPVLEVAEQATCALANLI-LDSEVSEKAIAEEIILPATRVL 751 (1890)
Q Consensus 677 ~a~~aL~~L~~~~~~-~~~~~---~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~-~~~~~~~~~~~~~~v~~L~~ll 751 (1890)
+|.+.|..+.+-.=. .++.. -.+....|..-=++++...+.-.+|+..|-+.. +..+.. .+.-++.+.+.+++
T Consensus 613 aasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l 690 (970)
T COG5656 613 AASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLL 690 (970)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcc
Confidence 555555554320000 01100 122223333334556666677777777776665 222221 33446666666666
Q ss_pred hcCCc-chHHHHHHHHHHHhhcCcc
Q 000184 752 CEGTI-SGKTLAAAAIARLLHSRKI 775 (1890)
Q Consensus 752 ~~~~~-~~~~~aa~aL~~L~~~~~~ 775 (1890)
.+... .--...+-+|.++...+++
T Consensus 691 ~~~~t~~y~ee~~~al~nfityG~~ 715 (970)
T COG5656 691 IDEITAVYSEEVADALDNFITYGKT 715 (970)
T ss_pred cccchhhhHHHHHHHHHHHHHhCcc
Confidence 66664 3456778888888876544
No 232
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=64.57 E-value=3.4e+02 Score=33.24 Aligned_cols=140 Identities=16% Similarity=0.091 Sum_probs=83.2
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc----------CCCHHHHHHHHHHHHH
Q 000184 368 LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT----------MATNEVQEELVRALLK 437 (1890)
Q Consensus 368 ~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~----------~~~~~v~~~a~~aL~~ 437 (1890)
..+-..+++.+..+.+...+...+.++.-|+.+...-..+....-...|+.+-+ .++..+...+.+||.|
T Consensus 44 ~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcN 123 (532)
T KOG4464|consen 44 KELGERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCN 123 (532)
T ss_pred HHHHHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHH
Confidence 345566677776666555566777777777665554333333333333333322 2345788899999999
Q ss_pred hhccCchhhHHHHhcCcHHHHHHhhCC-----CCHHHHHHHHHHHHHcccCChhc-HHHHHhcCCcHHHHHhccCC
Q 000184 438 LCNNEGSLWRALQGREGIQLLISLLGL-----SSEQQQECSVALLCLLSNENDDS-KWAITAAGGIPPLVQILESG 507 (1890)
Q Consensus 438 L~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~nL~~~~~~~-~~~i~~~g~i~~Lv~lL~~~ 507 (1890)
+..+.+..+....+......+.+++.. ....++..=...|.-++.-.... .+.+++.+|++.+-+++++.
T Consensus 124 lvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 124 LVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDK 199 (532)
T ss_pred HHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhcc
Confidence 998877666666555544444444321 22334444444555554333444 45567899999999999753
No 233
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=63.98 E-value=80 Score=40.55 Aligned_cols=142 Identities=15% Similarity=0.088 Sum_probs=103.0
Q ss_pred HHHHHHHhcC----CCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC-CCCHHHHHHHHHHHHHcccCChhc
Q 000184 413 KRLLVGLITM----ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDS 487 (1890)
Q Consensus 413 i~~Lv~lL~~----~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~ 487 (1890)
-|...+...+ .|+..|..|.-+|..+.+-..+++. ...|.|+..+. +++|.+|.+|+-.|+.+.-.....
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence 3444555543 6889999999999886654444443 56899999887 889999999999988876322211
Q ss_pred HHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000184 488 KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 567 (1890)
Q Consensus 488 ~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~ 567 (1890)
... .-..|.+-|.+.+..+|..|..++..|-..+ . +-=.|-.+.+..+|.+.+.+....|-..+..++..
T Consensus 969 ~de-----~t~yLyrrL~De~~~V~rtclmti~fLilag-q----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 969 ADE-----HTHYLYRRLGDEDADVRRTCLMTIHFLILAG-Q----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred hHH-----HHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-c----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 111 3345666788889999999999999887532 1 11257788899999999999999888888888775
Q ss_pred CC
Q 000184 568 SD 569 (1890)
Q Consensus 568 ~~ 569 (1890)
.+
T Consensus 1039 dN 1040 (1128)
T COG5098 1039 DN 1040 (1128)
T ss_pred cc
Confidence 43
No 234
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=62.72 E-value=1.2e+02 Score=37.85 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=76.7
Q ss_pred HHHHHHhhCCC---CHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhcc-CC---CHHHHHHHHHHHHHHhcCCh
Q 000184 455 IQLLISLLGLS---SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SG---SAKAKEDSASILRNLCNHSE 527 (1890)
Q Consensus 455 i~~Lv~lL~~~---~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~-~~---~~~~~e~a~~aL~~L~~~~~ 527 (1890)
...|...++.. .+.+-..|+..++.+....|..-..+.++|.++.+++.+. .+ +.++-...-.+|..||- |.
T Consensus 108 ~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~ 186 (379)
T PF06025_consen 108 LSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NN 186 (379)
T ss_pred HHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CH
Confidence 45555566554 5678888999999999777778899999999999999888 44 66777777788999998 57
Q ss_pred HHHHHHHhCCCHHHHHHHhhcC
Q 000184 528 DIRACVESADAVPALLWLLKNG 549 (1890)
Q Consensus 528 ~~r~~i~~~g~i~~Lv~ll~~~ 549 (1890)
.-.+.+.+.+.++.+++++.+.
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHHHHHHhcChHHHHHHHhCCH
Confidence 8888888999999999999874
No 235
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=62.58 E-value=4 Score=29.19 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhcc
Q 000184 1258 ARYSAAKALESLFSADHIRNAESARQAVQPLVEILNT 1294 (1890)
Q Consensus 1258 ~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~ 1294 (1890)
+|+.|+++|+.+ ++..++++|++.|++
T Consensus 1 VR~~Aa~aLg~i----------gd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQI----------GDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-----------SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc----------CCHHHHHHHHHHhcC
Confidence 578899999975 556679999998863
No 236
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=62.58 E-value=44 Score=35.95 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=79.4
Q ss_pred ChHHHHHhhcC-CcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCc
Q 000184 1411 AVIPLVGLLYG-RNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGP 1489 (1890)
Q Consensus 1411 av~~L~~lL~~-~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~ 1489 (1890)
.++.|..+|+. .+..+|+.++++||.||.-+|-....+.+..- ..- -.+..+.... ..+.+. ........-
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-~~~---~~~~~~~~~~---~~l~~~-~~~~~~ee~ 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-SKS---SENSNDESTD---ISLPMM-GISPSSEEY 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-ccc---cccccccchh---hHHhhc-cCCCchHHH
Confidence 35677788874 46899999999999999887654443211100 000 0000000000 000000 000000000
Q ss_pred cccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhh
Q 000184 1490 SAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLL 1566 (1890)
Q Consensus 1490 ~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~ 1566 (1890)
...-++..|++.|+++.... -...+++++.++.+.......- --+..+|.++..+.+..+..++.-..-|+.+.
T Consensus 83 y~~vvi~~L~~iL~D~sLs~-~h~~vv~ai~~If~~l~~~cv~--~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSS-HHTAVVQAIMYIFKSLGLKCVP--YLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCcCchh--HHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 12224778888888766222 2235889999997654333321 34567888898888766688887777766553
No 237
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=60.10 E-value=9.9 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhcc
Q 000184 1425 MLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHE 1463 (1890)
Q Consensus 1425 ~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~ 1463 (1890)
.+|..|+.+|++++... +++.|++.|.+
T Consensus 2 ~vR~~aa~aLg~~~~~~-----------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDEE-----------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCHh-----------HHHHHHHHhcC
Confidence 57999999999998776 77888888865
No 238
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=60.02 E-value=3.3e+02 Score=35.53 Aligned_cols=143 Identities=16% Similarity=0.112 Sum_probs=82.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHH--cCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhH
Q 000184 617 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA--VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 694 (1890)
Q Consensus 617 ~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 694 (1890)
-+..++..+. .++..+--++++|+|+..+ +..++.+.. .-.+.++...-..++..++.+.+....|++...-+.+
T Consensus 590 ~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~- 666 (745)
T KOG0301|consen 590 LVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDN- 666 (745)
T ss_pred HHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcc-
Confidence 3445555554 6788888999999999987 444433322 2223333333344455666666666666653221111
Q ss_pred HHHHhCCChHHHHHHh---CCCCH--HHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcc-hHHHHHHH
Q 000184 695 VAAVARDALSPLVVLA---GSPVL--EVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAA 765 (1890)
Q Consensus 695 ~~~~~~~~v~~Lv~ll---~~~~~--ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~-~~~~aa~a 765 (1890)
.+.++.+.|..++ ..+.+ |..-+...||.+|+..+....++...--+..+++-+++.... ...+.++-
T Consensus 667 ---~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 667 ---EQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred ---cccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 1234444444333 33333 344677889999998888888887777777777776665433 44444433
No 239
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=59.90 E-value=81 Score=40.51 Aligned_cols=113 Identities=12% Similarity=-0.013 Sum_probs=77.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHH-----HcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchh
Q 000184 618 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI-----AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 692 (1890)
Q Consensus 618 i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~-----~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 692 (1890)
...++++|.+++--+|..-..+.+|+..+-..--+.+. -...+..|++-+.+.+|-++..|++.+..++.-+...
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 67889999999999999888888888765211111111 1123555556667888999999999999998654332
Q ss_pred hHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCch
Q 000184 693 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 733 (1890)
Q Consensus 693 ~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~ 733 (1890)
.+. .+...+..+.-+.+...-||..|......|++..+
T Consensus 381 ~~~---r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGR---RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cch---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 211 23455666677888888899998888888875433
No 240
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.24 E-value=1.1e+02 Score=39.47 Aligned_cols=194 Identities=16% Similarity=0.082 Sum_probs=115.1
Q ss_pred hhCchHHHHHH-HccCChHHHHHHHHHHHhccCC---chHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCCh
Q 000184 1367 AARCVEPLVSL-LVTEFSPAQHSVVRALDKLVDD---EQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP 1442 (1890)
Q Consensus 1367 ~~~~i~~Lv~l-L~~~~~~~~~~a~~aL~~L~~~---~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~ 1442 (1890)
..++++..+.. +.-+...+..+.-+.|+.+... .+..+.++-.=+=+-|..-|+..|..||.+|+..+.+.=.-.+
T Consensus 127 E~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~d 206 (1005)
T KOG1949|consen 127 ENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRD 206 (1005)
T ss_pred hhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCC
Confidence 34555554432 2223335555566677777622 2222222111122455677889999999999998887654332
Q ss_pred hhH--HHH--HHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCC----hHHHHHHhhccCCChhhHHH
Q 000184 1443 SCK--LEM--VKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKV----VEPLFLLLTRSEFGPDGQHS 1514 (1890)
Q Consensus 1443 ~~~--~~l--~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~----v~~Li~lL~~~~~~~~v~~~ 1514 (1890)
... .++ +=.+=..-+.++|+++-+.+++.+..-+....+.-. ....... +..++.-+. .|+..+||.+
T Consensus 207 pd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW---e~iP~~i~~~ll~kI~d~~a-~dt~s~VR~s 282 (1005)
T KOG1949|consen 207 PDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW---EMIPPTILIDLLKKITDELA-FDTSSDVRCS 282 (1005)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH---HHcCHHHHHHHHHHHHHHhh-hccchheehh
Confidence 222 222 112345678889999989999887755533332211 1111122 222222233 3556789998
Q ss_pred HHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc
Q 000184 1515 ALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE 1568 (1890)
Q Consensus 1515 al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~ 1568 (1890)
....|..++.+|.+...+ ..++|.|=..|.+....||.++...|..+...
T Consensus 283 vf~gl~~~l~np~sh~~l----e~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 283 VFKGLPMILDNPLSHPLL----EQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HhcCcHHHHcCccchhHH----HHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 888898888877766554 23456666667788999999999999988763
No 241
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=58.78 E-value=4.2e+02 Score=32.41 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=112.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCchhhHHHHhcC--cHHHHHHhhCCC-----C--------HHHHHHHH-H
Q 000184 413 KRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGRE--GIQLLISLLGLS-----S--------EQQQECSV-A 475 (1890)
Q Consensus 413 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~~i~~~g--~i~~Lv~lL~~~-----~--------~~v~~~A~-~ 475 (1890)
++.+...|.+........+++.|..+.. ++....+.+...= ..+.|.+++... + +.+|...+ .
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777888888888888899999999988 6656666665432 245666666432 1 27777766 4
Q ss_pred HHHHcccCChhcHHHHH-hcCCcHHHHHhccCCCHHHHHHHHHHHHH-HhcCC---hHHHHHHHhCCCHHHHHHHhhcCC
Q 000184 476 LLCLLSNENDDSKWAIT-AAGGIPPLVQILESGSAKAKEDSASILRN-LCNHS---EDIRACVESADAVPALLWLLKNGS 550 (1890)
Q Consensus 476 aL~nL~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~-L~~~~---~~~r~~i~~~g~i~~Lv~ll~~~~ 550 (1890)
+|+.+..+++..+..+. +.+.+..+.+-+..+++++......+|.. +..+. ...+..+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 56666665666655554 56678888899998888998888888885 44321 234555666778888999887766
Q ss_pred h----hHHHHHHHHHHHHhcCCCC
Q 000184 551 A----NGKEIAAKTLNHLIHKSDT 570 (1890)
Q Consensus 551 ~----~~~~~Aa~aL~~L~~~~~~ 570 (1890)
+ .+.+.+-..|..+|.++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCc
Confidence 6 7788888888888876654
No 242
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=58.23 E-value=3.4e+02 Score=31.27 Aligned_cols=135 Identities=20% Similarity=0.195 Sum_probs=80.3
Q ss_pred HHHHH-hccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHH
Q 000184 498 PPLVQ-ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQL 576 (1890)
Q Consensus 498 ~~Lv~-lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L 576 (1890)
+.|+. +-+..+++.+.....+|..++.+...+.. -++..|..+...++...+..+.+.+..+....+. ..+.|
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f~~L 76 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HFPFL 76 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HHHHH
Confidence 34444 44556899999999999999986412222 2345566666666666666777777777775542 22333
Q ss_pred HHHHhc----------CCcc---hHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHh-cCCCHHHHHHHHHHHHH
Q 000184 577 TALLTS----------DLPE---SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL-SSTKEETQAKSASALAG 642 (1890)
Q Consensus 577 ~~lL~~----------~~~~---~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL-~s~~~~~~~~A~~aL~~ 642 (1890)
-.++.. +... .......++..++...+. ....-++.+..++ .+.++..+..+..+|..
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--------~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--------HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--------hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 333222 1111 111122344444443332 1123477788888 78888899999999999
Q ss_pred Hhhc
Q 000184 643 IFET 646 (1890)
Q Consensus 643 L~~~ 646 (1890)
+|..
T Consensus 149 Lc~~ 152 (234)
T PF12530_consen 149 LCEA 152 (234)
T ss_pred HHHH
Confidence 9943
No 243
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=57.32 E-value=37 Score=31.03 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhCC
Q 000184 470 QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESAD 537 (1890)
Q Consensus 470 ~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g 537 (1890)
...|.++++++++ .+.....+.+.+.++.++++.+.. ...+|--|..+|+-++. +.+-++.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 3568899999995 677777788889999999998754 67889999999999987 466666655544
No 244
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=56.92 E-value=4.8e+02 Score=32.54 Aligned_cols=124 Identities=12% Similarity=0.131 Sum_probs=91.1
Q ss_pred CcHHHHHHHhcCC---CHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC-C---CCHHHHHHHHHHHHHcccC
Q 000184 411 EAKRLLVGLITMA---TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-L---SSEQQQECSVALLCLLSNE 483 (1890)
Q Consensus 411 g~i~~Lv~lL~~~---~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~---~~~~v~~~A~~aL~nL~~~ 483 (1890)
.....|...++.. .+.+-..|+..+...-.+.|..-..+.++|.++.+++.+. . ++.++....-.+|..||-
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL- 184 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL- 184 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-
Confidence 3344555555543 3567778888888888888877888889999999999887 3 467777777799999995
Q ss_pred ChhcHHHHHhcCCcHHHHHhccCCCH-------HHHHHHHHHHHHHhcCChHHHHHHHh
Q 000184 484 NDDSKWAITAAGGIPPLVQILESGSA-------KAKEDSASILRNLCNHSEDIRACVES 535 (1890)
Q Consensus 484 ~~~~~~~i~~~g~i~~Lv~lL~~~~~-------~~~e~a~~aL~~L~~~~~~~r~~i~~ 535 (1890)
+....+.+.+.+.++.+++++.+++- +.-...-..+-.|.+|.+..|..+.+
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88999999999999999999987621 11122334556666777777766544
No 245
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.65 E-value=7.8e+02 Score=34.62 Aligned_cols=186 Identities=13% Similarity=0.101 Sum_probs=105.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhcc--chhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhc-------cCc
Q 000184 1245 SQLVAVLRLGGRGARYSAAKALESLFSA--DHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLS-------ENP 1315 (1890)
Q Consensus 1245 ~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~--~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~-------~~~ 1315 (1890)
+.|.+-.++-....|..+..+|..|... .+..+.+ ...|+-+|-.+++.+...|+.|...|..++. +++
T Consensus 700 n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e 777 (1176)
T KOG1248|consen 700 NSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNE 777 (1176)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhccccc
Confidence 3444444444445555555556555541 1222222 3457777777788888889999988988883 111
Q ss_pred hhhHHHHhhhCChHHHHHHHHhhc-CChhhHHHHH---HHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHH
Q 000184 1316 SRALAVADVEMNAVDVLCRILSSN-CSMELKGDAA---ELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVR 1391 (1890)
Q Consensus 1316 ~~~~~~~~v~~g~v~~L~~lL~~~-~~~~~~~~a~---~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~ 1391 (1890)
... -++...+.++..+ -.+...-.+. .+=..++...++.....-...++.+..+|.+.+++++..|+.
T Consensus 778 ~~~--------~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~ 849 (1176)
T KOG1248|consen 778 PAS--------AILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIG 849 (1176)
T ss_pred chH--------HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 101 1444444444332 1112222222 222223333333333333455566666778999999999999
Q ss_pred HHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccC
Q 000184 1392 ALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1440 (1890)
Q Consensus 1392 aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 1440 (1890)
.+..++ ..+...-.-.....++.+..|+.+....+|.+...-|-+|..-
T Consensus 850 fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 850 FIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 999888 4444333222344578888888888888888887766666533
No 246
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=54.79 E-value=33 Score=33.07 Aligned_cols=71 Identities=15% Similarity=0.103 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCc
Q 000184 618 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 690 (1890)
Q Consensus 618 i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 690 (1890)
.......+.++.+.+|..+...|..|..... ....-..+++..+...++++++-+-..|..++..|+...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 4455667788899999999999999998866 1123345667777888899999999999999999976543
No 247
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.91 E-value=60 Score=38.00 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=97.4
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHH
Q 000184 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 491 (1890)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i 491 (1890)
++...+..|.+.++......+..++.|+..+++.-.... ...|-.+++-++.....+-..|+.++..+.....+. +
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~---i 164 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS---I 164 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 344556777888999999999999998887654332222 256788888899999999999999999887422221 1
Q ss_pred HhcCCcHHHHH-hccCC---CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 000184 492 TAAGGIPPLVQ-ILESG---SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 565 (1890)
Q Consensus 492 ~~~g~i~~Lv~-lL~~~---~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 565 (1890)
.+ ....++. |+... +.-+++.|-.+|..+..+-.. .-+++.|+..+++.+++++..++....++.
T Consensus 165 ~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 165 DQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 11 3344443 44333 345789999999999875221 225677888888888998888877766553
No 248
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=53.66 E-value=1.1e+02 Score=33.19 Aligned_cols=115 Identities=18% Similarity=0.116 Sum_probs=78.9
Q ss_pred CchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCC-HHHHHHHHHHHHHHh----cCc
Q 000184 658 KTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPV-LEVAEQATCALANLI----LDS 732 (1890)
Q Consensus 658 g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~-~ev~~~aa~aL~nL~----~~~ 732 (1890)
..+..+..+++++++..+..++..+...+...+ .....-....++..|+.+++.++ ..+.+.++.+|..|+ ..+
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345667788888888888888888877765532 11111234668889999998765 557899999999997 345
Q ss_pred hHHHHHHh---cCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCcc
Q 000184 733 EVSEKAIA---EEIILPATRVLCEGTISGKTLAAAAIARLLHSRKI 775 (1890)
Q Consensus 733 ~~~~~~~~---~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~ 775 (1890)
+...++.. ...+..++.+++. ......+..+|..++...++
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 55555543 4556666666665 45777888888888875554
No 249
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=53.29 E-value=62 Score=33.87 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=60.7
Q ss_pred CCchhhhhhccCCCCHHHHHHHHHHHHHhhcc--cccccchhccCcHHHHHHHhcC------CCHHHHHHHHHHHHHHhc
Q 000184 1537 HQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE--EQLQKDPVTQQVIGPLIRVLGS------GIHILQQRAVKALVSIAL 1608 (1890)
Q Consensus 1537 ~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~--~~~~~~l~~~~~i~~Lv~lL~s------~~~~v~~~A~~aL~~l~~ 1608 (1890)
..++..+..-|.+.++.++..|+.+|..|..+ ..++..+.+.+++..|++++.. .++.|+...+..+...+.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34677888889999999999999999988874 5677788888999999999953 578999999998887765
Q ss_pred c
Q 000184 1609 T 1609 (1890)
Q Consensus 1609 ~ 1609 (1890)
.
T Consensus 117 ~ 117 (139)
T cd03567 117 E 117 (139)
T ss_pred H
Confidence 3
No 250
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=52.36 E-value=1.2e+02 Score=39.71 Aligned_cols=186 Identities=13% Similarity=0.055 Sum_probs=109.5
Q ss_pred hcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHH
Q 000184 451 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIR 530 (1890)
Q Consensus 451 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r 530 (1890)
..+.+|.|++++++++..+|..-..-+-+.. +.....+++....|.+..-+.+.++.+|+.++..+..|+..-.. +
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~-~ 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK-R 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch-h
Confidence 4567899999999999999986555444443 33455667778999999999999999999998888887753110 0
Q ss_pred HHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHH
Q 000184 531 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 610 (1890)
Q Consensus 531 ~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 610 (1890)
.+....++.+-.+-.+ ++++++.+...|++. +++.. +.
T Consensus 404 --~Ln~Ellr~~ar~q~d----------------------------------~~~~irtntticlgk---i~~~l---~~ 441 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPD----------------------------------EHGGIRTNTTICLGK---IAPHL---AA 441 (690)
T ss_pred --hhcHHHHHHHHhhCcc----------------------------------ccCcccccceeeecc---ccccc---ch
Confidence 1111111111111111 222233332223221 11110 00
Q ss_pred hhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000184 611 GSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 685 (1890)
Q Consensus 611 ~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 685 (1890)
.++..--+..+..-++++-...|.++.++++......+.. -+...++|.++-+..+.+..++..+-.++...
T Consensus 442 ~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 442 SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchh---hhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 1111112344555677777778888888888777654322 34456788888888777777777777766554
No 251
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=51.99 E-value=3e+02 Score=36.27 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=93.3
Q ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh-cCCCHHHHHHHHHHHHHHHccCchhh
Q 000184 615 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVRENR 693 (1890)
Q Consensus 615 ~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~ 693 (1890)
...+|.|..-+++.+..+|+.+...+..++..-+ ..++..-++|.|..+. .+.+..++..++.|++.+... ..
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---lD 461 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---LD 461 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---HH
Confidence 3347888888889999999999999998887543 2366777899998875 567778999999999988621 11
Q ss_pred HHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcc
Q 000184 694 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS 757 (1890)
Q Consensus 694 ~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~ 757 (1890)
+..+. .-+.++.+..+..++++......+..+++.........+...+++.++-+...+.-.
T Consensus 462 ~~~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 462 KAAVL--DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred HHHhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccccc
Confidence 11122 235556666677888888877777777774433323444566777776666665533
No 252
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=51.24 E-value=4.5e+02 Score=30.54 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=42.6
Q ss_pred hhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcC-ChhhHHHHHHHHHHhhCC
Q 000184 1280 SARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNC-SMELKGDAAELCGVLFGN 1358 (1890)
Q Consensus 1280 ~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~-~~~~~~~a~~~l~~L~~~ 1358 (1890)
.+..++++|+++++.+++-. .. .++-.. .+.-..+++.+-.|-++.|.+++.+.. +.-++..|..++..+...
T Consensus 70 re~~A~~~li~l~~~~~~~~-~~---l~GD~~--tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~ 143 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFL-ED---LFGDFI--TEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHE 143 (249)
T ss_pred hhhhhHHHHHHHHcCCcchH-HH---HHcchh--HhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHc
Confidence 45678999999998665411 00 011100 011122223355688999999997652 234777777888777544
No 253
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=51.23 E-value=1.4e+02 Score=30.92 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=57.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCch-hhhHhhccchHHHHHHHHcC--CCCHhHHHHHHHHHHHhhh
Q 000184 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-VCSRVLAADATKQLLKLLGS--GNEASVRAEAAGALKSLSD 268 (1890)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~~Aa~aL~~Ls~ 268 (1890)
++..|-+-|.++++.++..|..+|-.++...+. ....+.....+..|++++.. ..+.+++..+...+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999877765554 55666666888889999976 3467888888888877665
No 254
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=49.68 E-value=42 Score=37.94 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcccCChhcHHHHHhcC-------CcHHHHHhccCC-CHHHHHHHHHHHHHHhcCChHHH-HHHHhCCC
Q 000184 468 QQQECSVALLCLLSNENDDSKWAITAAG-------GIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIR-ACVESADA 538 (1890)
Q Consensus 468 ~v~~~A~~aL~nL~~~~~~~~~~i~~~g-------~i~~Lv~lL~~~-~~~~~e~a~~aL~~L~~~~~~~r-~~i~~~g~ 538 (1890)
.-|..|..+|+.|+- .+.|...+...+ .+..|++++... ++..||.|+..|.+|+..+.... ..-.+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457889999999984 566666555444 344556666544 78899999999999998665544 44456899
Q ss_pred HHHHHHHhhcCCh
Q 000184 539 VPALLWLLKNGSA 551 (1890)
Q Consensus 539 i~~Lv~ll~~~~~ 551 (1890)
|..|+.++++...
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
No 255
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=48.98 E-value=3.8e+02 Score=35.27 Aligned_cols=152 Identities=13% Similarity=0.060 Sum_probs=93.6
Q ss_pred HHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh--cCc
Q 000184 655 IAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI--LDS 732 (1890)
Q Consensus 655 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~--~~~ 732 (1890)
.+.+.+|.|++++.+.+..++..-+.-+-+...+-+ +. +.+...+|.+..-+.+.++.+|+....++..|+ .++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~-~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQ-ILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HH-hhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 455789999999999888888877777776654432 22 567888999999999999999999888888875 222
Q ss_pred h-----HHHHH------------------------------HhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccch
Q 000184 733 E-----VSEKA------------------------------IAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDY 777 (1890)
Q Consensus 733 ~-----~~~~~------------------------------~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~ 777 (1890)
. ..+.+ ...-.+.++.+-+++.-...|..+.+++...........
T Consensus 403 ~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~ 482 (690)
T KOG1243|consen 403 RNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE 482 (690)
T ss_pred hhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh
Confidence 1 11111 111223334444555555566666666655443333222
Q ss_pred hHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHh
Q 000184 778 TITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSR 817 (1890)
Q Consensus 778 ~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~ 817 (1890)
+....++.++-+..+.+..+. ..|..++..++.
T Consensus 483 ------va~kIlp~l~pl~vd~e~~vr-~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 483 ------VANKILPSLVPLTVDPEKTVR-DTAEKAIRQFLE 515 (690)
T ss_pred ------hhhhccccccccccCcccchh-hHHHHHHHHHHh
Confidence 233556666666666555555 666666665543
No 256
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=48.84 E-value=5e+02 Score=33.48 Aligned_cols=69 Identities=16% Similarity=0.060 Sum_probs=43.7
Q ss_pred HHHHHHHhcC------CCHHHHHHHHHHHHHHhhcChhHH-HHHHHc--CchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000184 618 VETMIKILSS------TKEETQAKSASALAGIFETRKDLR-ESSIAV--KTLWSVMKLLDVGSECILVEASRCLAAIF 686 (1890)
Q Consensus 618 i~~Lv~lL~s------~~~~~~~~A~~aL~~L~~~~~~~~-~~~~~~--g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 686 (1890)
+..|..+|.+ .+..+-+-|...+..+.++..+.+ ..+-.. -.+|.+...++.+++.+-......+.++.
T Consensus 252 i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 252 IRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 5666666632 234556678888888877752211 111122 26778888888888777778888888775
No 257
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.27 E-value=2.1e+02 Score=33.82 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=72.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh-cC---CCHHHHHHHHHHHHHHHccCchh
Q 000184 617 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DV---GSECILVEASRCLAAIFLSVREN 692 (1890)
Q Consensus 617 ~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~---~~~~v~~~a~~aL~~L~~~~~~~ 692 (1890)
.|..+++-+++....+-+.||.++..++..-++..+. .+..++..| .. ++.-++..|-.+|..|..+.. +
T Consensus 130 vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt-p 203 (334)
T KOG2933|consen 130 VIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT-P 203 (334)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC-h
Confidence 3677778888888899999999999999875544332 455555554 22 233478889999999976542 2
Q ss_pred hHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000184 693 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 693 ~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~ 729 (1890)
..+++.|+..+.+.++.++..++....+..
T Consensus 204 -------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 204 -------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred -------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 235788888899999999888776665554
No 258
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=48.18 E-value=1.2e+02 Score=33.65 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=94.3
Q ss_pred HHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhc----CChhhHHHHHHHHHHhhCCh--hhHHHHHhhCchHHHHH
Q 000184 1303 AIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN----CSMELKGDAAELCGVLFGNT--RIRSTVAAARCVEPLVS 1376 (1890)
Q Consensus 1303 A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~----~~~~~~~~a~~~l~~L~~~~--~~~~~~~~~~~i~~Lv~ 1376 (1890)
|+..|..+++.++.++.+ +++..--.|..+|... +-+-++-.+..+++.|..++ ++...+..+..+|-..+
T Consensus 120 aL~lLQclaShPetk~~F---l~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 120 ALNLLQCLASHPETKKVF---LDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHhcCcchheee---eecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 677777777777777766 5676666677887533 22346677888888888775 44455667888888899
Q ss_pred HHccCChHHHHHHHHHHHhccCCchHHHHHHH--------cCChHHHH-HhhcCCcHhHHHHHHHHHHHhccCChhhH
Q 000184 1377 LLVTEFSPAQHSVVRALDKLVDDEQLAELVAA--------HGAVIPLV-GLLYGRNYMLHEAISRALVKLGKDRPSCK 1445 (1890)
Q Consensus 1377 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~--------~gav~~L~-~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 1445 (1890)
.+..+++--+.-|+-.+.++..|+...+.+.+ ...+..++ .+...+..+..+.++++-..++.+ |..|
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~-p~aR 273 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK-PHAR 273 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC-HhHH
Confidence 99999999999998888888855543332211 11122222 344456777888888888888876 4444
No 259
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.98 E-value=1.3e+02 Score=31.67 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=74.1
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccc--hh
Q 000184 21 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN--EL 98 (1890)
Q Consensus 21 ~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~--~~ 98 (1890)
++.+++++..+.... ++--.....+.+..+..+. +. ..++..|-+.|+++++.++..|...|..+.++= ..
T Consensus 4 ~~~~~I~kATs~~l~-~~dw~~ileicD~In~~~~-----~~-k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~f 76 (142)
T cd03569 4 EFDELIEKATSELLG-EPDLASILEICDMIRSKDV-----QP-KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHF 76 (142)
T ss_pred hHHHHHHHHcCcccC-ccCHHHHHHHHHHHhCCCC-----CH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHH
Confidence 466777777665432 2223444444444444321 11 256778999999999999999999999988763 34
Q ss_pred hHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 000184 99 RVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 99 ~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~ls~ 135 (1890)
...+...+-+..|+.++. ..++.++..+...+.+.+.
T Consensus 77 h~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 77 HDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 556777777888888886 4567788888888887766
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.68 E-value=1.8e+02 Score=30.60 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-chhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhh
Q 000184 196 GGIDILVKLLTLGQSSTQAHVCFLLACMMEED-VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSD 268 (1890)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~ 268 (1890)
.++..|.+-|.++++.++..|..+|-.++... ......+.+.+.+..|++++....+..++..+...+..-+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 35778888899999999999999997777553 33567788889999999999865667888888888877654
No 261
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=46.57 E-value=1.3e+02 Score=35.57 Aligned_cols=141 Identities=16% Similarity=0.102 Sum_probs=87.5
Q ss_pred HHHHHhhcCHHHHHhhhhcC--cHHHHHHHHhcC----ChhHHHHHHHHHHHhhccchhhhhhhhc-C-ChHHHHHHhcc
Q 000184 1223 DLLGILFSSAEIRRHESAFA--AVSQLVAVLRLG----GRGARYSAAKALESLFSADHIRNAESAR-Q-AVQPLVEILNT 1294 (1890)
Q Consensus 1223 ~ll~~l~~~~~~~~~~~~~g--~i~~Lv~lL~~~----~~~~r~~Aa~aL~~L~~~~~~r~~i~~~-~-~i~~Lv~lL~~ 1294 (1890)
++++++..++.........+ ....+..++..+ .+..+..+.|.+.|++.....|..+.+. + .|-..+..+..
T Consensus 85 DLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~ 164 (268)
T PF08324_consen 85 DLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLS 164 (268)
T ss_dssp HHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCT
T ss_pred hHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhh
Confidence 45666665555543332222 245555555444 5678999999999999988888877763 3 45555555555
Q ss_pred C----ChHHHHHHHHHHHHHhccC---chhhHHHHhhhCChHHHHHHHHh-hcCChhhHHHHHHHHHHhhCChhhHHHHH
Q 000184 1295 G----LEREQHAAIAALVRLLSEN---PSRALAVADVEMNAVDVLCRILS-SNCSMELKGDAAELCGVLFGNTRIRSTVA 1366 (1890)
Q Consensus 1295 ~----~~~~~~~A~~aL~~L~~~~---~~~~~~~~~v~~g~v~~L~~lL~-~~~~~~~~~~a~~~l~~L~~~~~~~~~~~ 1366 (1890)
. +...|.+++..+.|++... +..... +...+..+.+.+. ...+.+......-++++|...+.......
T Consensus 165 ~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~----~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~ 240 (268)
T PF08324_consen 165 SLLDSNKNVRIALATLLLNLSVLLHKNRSDEEW----QSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLA 240 (268)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCH----HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHC
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHH
Confidence 4 5677888999999998711 100100 1124556666433 32567788888889999886665555554
Q ss_pred h
Q 000184 1367 A 1367 (1890)
Q Consensus 1367 ~ 1367 (1890)
.
T Consensus 241 ~ 241 (268)
T PF08324_consen 241 K 241 (268)
T ss_dssp C
T ss_pred H
Confidence 4
No 262
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=45.90 E-value=5.9e+02 Score=30.34 Aligned_cols=198 Identities=12% Similarity=0.107 Sum_probs=121.6
Q ss_pred HHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC---Cc------HHH-HHHHHhcCCcchHHHHHHHHHHHhhhc
Q 000184 533 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---AT------ISQ-LTALLTSDLPESKVYVLDALKSMLSVV 602 (1890)
Q Consensus 533 i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~---~~------i~~-L~~lL~~~~~~~~~~a~~aL~~L~~~~ 602 (1890)
+.+.|..+.|++-+...+-+.+..+..+..|+-+..-. .+ -+. +-.++.... ....-|+ ..|++..-.
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~-~~~~iaL-~cg~mlrEc 152 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYE-NTPEIAL-TCGNMLREC 152 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhc-cchHHHH-HHHHHHHHH
Confidence 44688999999999999999999999888888653321 01 111 222233321 1222222 223333222
Q ss_pred CchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCc----hHHHHHhhcCCCHHHHHHH
Q 000184 603 SFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKT----LWSVMKLLDVGSECILVEA 678 (1890)
Q Consensus 603 ~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~----i~~Lv~lL~~~~~~v~~~a 678 (1890)
-..+.+.+.+-...-....-.++..+.=++-..|..+...+...++.....+...+. ...--.++.+++--+++++
T Consensus 153 irhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs 232 (342)
T KOG1566|consen 153 IRHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQS 232 (342)
T ss_pred HhhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHH
Confidence 222222333333444555555555555566666777777766655554444444433 3335677899999999999
Q ss_pred HHHHHHHHccCchhhHHH--HHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc
Q 000184 679 SRCLAAIFLSVRENREVA--AVARDALSPLVVLAGSPVLEVAEQATCALANLILDS 732 (1890)
Q Consensus 679 ~~aL~~L~~~~~~~~~~~--~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~ 732 (1890)
...++.+..+.+....+. +-....++.+..+|+++...+|-+|-..-+-...+|
T Consensus 233 ~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 233 LKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 999999987654332222 444577889999999999999999888888766544
No 263
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=44.44 E-value=35 Score=35.95 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=62.3
Q ss_pred cCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc--cccccchhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhcc
Q 000184 1536 SHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE--EQLQKDPVTQQVIGPLIRVLGS-GIHILQQRAVKALVSIALT 1609 (1890)
Q Consensus 1536 ~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~--~~~~~~l~~~~~i~~Lv~lL~s-~~~~v~~~A~~aL~~l~~~ 1609 (1890)
...++..|..-|.+.++.+|..|+.+|..|..+ ..+...+.+..+++.|++++.. .++.|+...+..+...+..
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 345677777888899999999999999998884 5577778888999999999987 8899999999999888754
No 264
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=43.90 E-value=1.7e+02 Score=30.35 Aligned_cols=105 Identities=20% Similarity=0.174 Sum_probs=69.6
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhchh-hHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccch--hh
Q 000184 23 AQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--LR 99 (1890)
Q Consensus 23 ~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~-~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~--~~ 99 (1890)
..+++++.+....+++ -.....+.+.....+ +++ .++..|-..|+++++.++..|...|..+.++-. .+
T Consensus 2 ~~~I~kATs~~~~~~D-~~~il~icd~I~~~~~~~k-------~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~ 73 (133)
T cd03561 2 TSLIERATSPSLEEPD-WALNLELCDLINLKPNGPK-------EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFH 73 (133)
T ss_pred hHHHHHHcCcccCCcc-HHHHHHHHHHHhCCCCCHH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHH
Confidence 3456666554333222 344444444444432 222 456778899999999999999999999987643 34
Q ss_pred HHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhc
Q 000184 100 VKVLLGGCIPPLLGLLKS---SSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 100 ~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~aL~~ls~ 135 (1890)
..+.....+..|+.++.. .+.+++..+...+.+++.
T Consensus 74 ~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 74 LQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 455555566678888864 467888888888887766
No 265
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=43.74 E-value=2.8e+02 Score=42.38 Aligned_cols=269 Identities=16% Similarity=0.143 Sum_probs=150.8
Q ss_pred HHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCc--hHHHHHH-----HccCChHHHHHHHHHHHhccCCchHHHHH
Q 000184 1334 RILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARC--VEPLVSL-----LVTEFSPAQHSVVRALDKLVDDEQLAELV 1406 (1890)
Q Consensus 1334 ~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~--i~~Lv~l-----L~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 1406 (1890)
.++.. .+++++..+...+..++....+..+...... +.-.... +.++++.++......+..- .++. .
T Consensus 488 ~~~~~-~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~-~~~~----l 561 (2341)
T KOG0891|consen 488 SYLEA-DDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNER-FDAQ----L 561 (2341)
T ss_pred HHHhc-ccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccc-hhhh----h
Confidence 34443 3567888888777777766655221111111 1111111 1245666666554444300 1111 1
Q ss_pred HHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccccc
Q 000184 1407 AAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIA 1486 (1890)
Q Consensus 1407 ~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~ 1486 (1890)
.+.+.+..+...+.++....+..+...+++++..+|.....-.+..-+..+-++-.+.-..+....+..+..+.......
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence 13445566777778889999999999999999988755444444444444444443333323333343333333222222
Q ss_pred CCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhcc-CCCCHHHHHHHHHHHHHh
Q 000184 1487 KGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLL-DSPAPAVQQLAAELLSHL 1565 (1890)
Q Consensus 1487 ~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL-~s~~~~vq~~A~~aL~~l 1565 (1890)
..+...+.+..++..+.+++ +-+.+.++.+++.|+......... -....++.+.+.+ +.....-|..+.++++++
T Consensus 642 i~~~v~~~l~~~~~~~~~~~--s~~~~~~~~~~~eL~~v~g~~~~~--~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPS--SGVEKAVLETIGELCAVGGEEMVK--WVDELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHhhcCchHHHHHHHHhccc--hhhHHHHHHHHHHHHHhccchhhh--ccchHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 22223334566666677777 788888999999997654422211 1113344444433 355566688889999999
Q ss_pred hcccccc--cchhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChh
Q 000184 1566 LLEEQLQ--KDPVTQQVIGPLIRVLGS-GIHILQQRAVKALVSIALTWPN 1612 (1890)
Q Consensus 1566 ~~~~~~~--~~l~~~~~i~~Lv~lL~s-~~~~v~~~A~~aL~~l~~~~~~ 1612 (1890)
..+.-+- ........++.|+..+.. ....++..+++.+++++..-+.
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~ 767 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY 767 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh
Confidence 8754331 222334456777776654 5567899999999988765544
No 266
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=43.67 E-value=1e+03 Score=32.43 Aligned_cols=195 Identities=15% Similarity=0.148 Sum_probs=106.0
Q ss_pred HHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhh
Q 000184 262 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQV 341 (1890)
Q Consensus 262 aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~ 341 (1890)
+|++.+..++++.+.+.+.||+..+...+.... ...++..+++.+.|++.-.+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~--------~~~~~~~il~~l~n~~~~~~~------------------ 547 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD--------NEELHRKILGLLGNLAEVLEL------------------ 547 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc--------chhHHHHHHHHHHHHHHHhhh------------------
Confidence 999999999999999999999999999997643 467888899999887641100
Q ss_pred hhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc
Q 000184 342 ADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT 421 (1890)
Q Consensus 342 ~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~ 421 (1890)
....+.+. ...+ ..+..++..-+....-..++..|+.+..+.+. -...+..
T Consensus 548 -------~~~~~~~~----------~~~~-~~f~~~~~~w~~~ersY~~~siLa~ll~~~~~---~~~~~~r-------- 598 (699)
T KOG3665|consen 548 -------RELLMIFE----------FIDF-SVFKVLLNKWDSIERSYNAASILALLLSDSEK---TTECVFR-------- 598 (699)
T ss_pred -------hhhhhHHH----------HHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHhCCCc---Cccccch--------
Confidence 00000000 0000 11222222222212344566666665333221 0001111
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHH-HHHhhC-CCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHH
Q 000184 422 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQL-LISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPP 499 (1890)
Q Consensus 422 ~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~-Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~ 499 (1890)
+.+.+.-..++...... .....-..-+.+ +..++. +..+..+.-|.+++.++...++++.+.+.+.|+++.
T Consensus 599 ---~~~~~~l~e~i~~~~~~----~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~ 671 (699)
T KOG3665|consen 599 ---NSVNELLVEAISRWLTS----EIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFEL 671 (699)
T ss_pred ---HHHHHHHHHHhhccCcc----ceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhh
Confidence 11122222222221111 111111122222 444444 456778888999999999888888888999999988
Q ss_pred HHHhccCC-CHHHHHHHHHH
Q 000184 500 LVQILESG-SAKAKEDSASI 518 (1890)
Q Consensus 500 Lv~lL~~~-~~~~~e~a~~a 518 (1890)
+.+.-... ...+++.+...
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 672 IENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred hhhcchhHHHHHHHHHHHHH
Confidence 77764322 33444444433
No 267
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=43.49 E-value=4.9e+02 Score=33.23 Aligned_cols=231 Identities=20% Similarity=0.145 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHhhcc--chhhhhhhhcCChH-HHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHH
Q 000184 1257 GARYSAAKALESLFSA--DHIRNAESARQAVQ-PLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLC 1333 (1890)
Q Consensus 1257 ~~r~~Aa~aL~~L~~~--~~~r~~i~~~~~i~-~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~ 1333 (1890)
..|..||.||+.+... .... ..... .|+..|++...-.|..|+..+.+.+........-. .-....+.|.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~-----~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~--~~~~l~~~L~ 174 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSL-----QEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSP--PPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchH-----HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCc--cHHHHHHHHH
Confidence 4788999999988762 1111 11234 58999999988889999999998887433222100 0012445677
Q ss_pred HHHhhcCChhhHHHHHHHHHHhh-CChhhHHHHHhhCc-----hHHHHHHHc---c--C---ChHHHHHHHHH----HHh
Q 000184 1334 RILSSNCSMELKGDAAELCGVLF-GNTRIRSTVAAARC-----VEPLVSLLV---T--E---FSPAQHSVVRA----LDK 1395 (1890)
Q Consensus 1334 ~lL~~~~~~~~~~~a~~~l~~L~-~~~~~~~~~~~~~~-----i~~Lv~lL~---~--~---~~~~~~~a~~a----L~~ 1395 (1890)
++|... +...-.+....+..+- ++......+...|. ++.|-.... . + +-+..+..+.. +..
T Consensus 175 ~~L~~~-~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~ 253 (441)
T PF12054_consen 175 EILENP-EPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKK 253 (441)
T ss_pred HHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHH
Confidence 777643 2222233333333221 11222222223332 111111111 0 0 00111111111 111
Q ss_pred ccC-Cc---------hHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCC
Q 000184 1396 LVD-DE---------QLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAP 1465 (1890)
Q Consensus 1396 L~~-~~---------~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~ 1465 (1890)
... .. +.|..+ ..++...-..-..-+..++-.+..|+..+..- |+.- ..+|.+|.+-++.++
T Consensus 254 ~l~~~~k~~a~~~Le~~r~~l--~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P~KL-----nPiIrpLMdSIK~Ee 325 (441)
T PF12054_consen 254 SLSPSQKLSALQALEDRRQRL--QAAIEEAKEVQTSRDVRVLAAAASALVALGGL-PKKL-----NPIIRPLMDSIKREE 325 (441)
T ss_pred hcCCcccchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCc-----cHHHHHHHHHhhccc
Confidence 111 00 011111 01122222222334556666667777777655 3332 236778888887766
Q ss_pred h-hHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhh
Q 000184 1466 D-FLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLT 1503 (1890)
Q Consensus 1466 ~-~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~ 1503 (1890)
+ .++..+|..+..|......++.....+.+..|...+.
T Consensus 326 n~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC 364 (441)
T PF12054_consen 326 NELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLC 364 (441)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhc
Confidence 4 5777788888777655555555556666776666663
No 268
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=43.33 E-value=3.6e+02 Score=31.72 Aligned_cols=213 Identities=11% Similarity=0.091 Sum_probs=116.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh--cCCCHHHHHHHHHHHHHHHccCchhhHHHH
Q 000184 620 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL--DVGSECILVEASRCLAAIFLSVRENREVAA 697 (1890)
Q Consensus 620 ~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL--~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~ 697 (1890)
.|-..|.++++.+|..|...|+.+...-+.. ......+..|+... +-.+......++.++..|..... ....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~-- 76 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPE-- 76 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChh--
Confidence 3456788899999999999998877654322 22334466666665 23455666666777777763321 1111
Q ss_pred HhCCChHHHHHHhCC-----CCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcc-hHHHHHHHHHHHhh
Q 000184 698 VARDALSPLVVLAGS-----PVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAAIARLLH 771 (1890)
Q Consensus 698 ~~~~~v~~Lv~ll~~-----~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~-~~~~aa~aL~~L~~ 771 (1890)
.+...+-.+..+ -....|..+-..+..++.+.....+-...+.+..++..+....+. .-..+-..+..+..
T Consensus 77 ---~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 77 ---SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ---hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 112222222322 223466777777777775544444444567777777777665544 33333333333333
Q ss_pred cCccchhHhhhhhhhccHHHHHHHhhc--------c--C-cccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChh
Q 000184 772 SRKIDYTITDCVNRAGTVLALVSFLES--------A--S-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSIT 840 (1890)
Q Consensus 772 ~~~~~~~~~~~~~~~g~l~~li~~l~~--------~--~-~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 840 (1890)
..+. . .....+.+.+.+ + + ..|..++--.+|.+-+..++. -.+..++
T Consensus 154 ~~~~-~---------~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~------------fa~~~~p 211 (262)
T PF14500_consen 154 EFDI-S---------EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL------------FAPFAFP 211 (262)
T ss_pred hccc-c---------hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh------------hHHHHHH
Confidence 3332 1 222233333333 1 1 234445555555554322211 1245777
Q ss_pred hHHhHhhcCChhHHHHHHHHHHH
Q 000184 841 PIVSSIADATPLLQDKAIEILSR 863 (1890)
Q Consensus 841 ~l~~~l~~~~~~~~~~a~~~L~~ 863 (1890)
-|...|..+.+.++..+.+.|..
T Consensus 212 ~LleKL~s~~~~~K~D~L~tL~~ 234 (262)
T PF14500_consen 212 LLLEKLDSTSPSVKLDSLQTLKA 234 (262)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHH
Confidence 88889999998888887776643
No 269
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=43.32 E-value=1.6e+02 Score=31.98 Aligned_cols=108 Identities=19% Similarity=0.136 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcC--chHHHHHhhcC-CCHHHHHHHHHHHHHHHccC---ch
Q 000184 618 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVK--TLWSVMKLLDV-GSECILVEASRCLAAIFLSV---RE 691 (1890)
Q Consensus 618 i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g--~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~~~---~~ 691 (1890)
+..+..+|++.++..|-.++..+..++..++. +.+.+.+ .+..|+..|+. ++..+...++.++..|.... ++
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 56678899999999999999999888887532 2233333 47778888865 44567777888888776432 22
Q ss_pred hhHHH--HHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000184 692 NREVA--AVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 692 ~~~~~--~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~ 729 (1890)
..|.. ..-.+.++.+++++.. ....+.+..+|..++
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 23331 1112334444444443 344555555555554
No 270
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=43.19 E-value=2.3e+02 Score=29.88 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=58.7
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCch-hhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhh
Q 000184 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSD 268 (1890)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~ 268 (1890)
++..|.+-|.++++.++..|+.+|-.++.+.+. ...++.....+..|++++....+.+++..+...+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999877755443 566788889999999999886667888888888877664
No 271
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=42.09 E-value=2.4e+02 Score=29.31 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=55.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCc-hhhhHhhccchHHHHHHHHcCCCCHh-HHHHHHHHHHHhhh
Q 000184 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEAS-VRAEAAGALKSLSD 268 (1890)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~-~~~~Aa~aL~~Ls~ 268 (1890)
++..|-+-|.++++.++..|..+|-.++...+ .....+...+.+..|+++++...+.. ++..+...+..-+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 46778888899999999999999987775543 35677778889999999998865544 77777777766544
No 272
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.08 E-value=1.2e+03 Score=32.91 Aligned_cols=221 Identities=15% Similarity=0.157 Sum_probs=131.6
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHc---CchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCC
Q 000184 625 LSSTKEETQAKSASALAGIFETRKDLRESSIAV---KTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARD 701 (1890)
Q Consensus 625 L~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~---g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~ 701 (1890)
.++.+..+|..+-..|..++.. +.. +..... .+-..|..-+++.+..++...+.+|..|....+..... ++..
T Consensus 663 e~~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~-~i~k- 738 (1176)
T KOG1248|consen 663 ENSSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD-LIPK- 738 (1176)
T ss_pred hccccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH-HHHH-
Confidence 3556899999999999999987 221 111111 12233333445666678888999998887766522222 2222
Q ss_pred ChHHHHHHhCCCCHHHHHHHHHHHHHHhc-----CchHHHHHHhcCcHHHHHHHHhcC--CcchHHHH--HHHHHHHhhc
Q 000184 702 ALSPLVVLAGSPVLEVAEQATCALANLIL-----DSEVSEKAIAEEIILPATRVLCEG--TISGKTLA--AAAIARLLHS 772 (1890)
Q Consensus 702 ~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~-----~~~~~~~~~~~~~v~~L~~ll~~~--~~~~~~~a--a~aL~~L~~~ 772 (1890)
.++-++-.+++.+...++.+-..|-+|.. +..... ....++..+..+..+ ....+..+ .-|+..++..
T Consensus 739 ~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 739 LIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 34444444488888888888888888762 110000 123555555555555 22222222 3344444432
Q ss_pred Ccc--chhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCC
Q 000184 773 RKI--DYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT 850 (1890)
Q Consensus 773 ~~~--~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 850 (1890)
... +... -.+.+..+...|.+.+.+++ .-|+..+..+...- |...+.--.+..+..+.+..++.+
T Consensus 816 ~~~~ld~~~-----l~~li~~V~~~L~s~sreI~-kaAI~fikvlv~~~-------pe~~l~~~~~~LL~sll~ls~d~k 882 (1176)
T KOG1248|consen 816 FKNILDDET-----LEKLISMVCLYLASNSREIA-KAAIGFIKVLVYKF-------PEECLSPHLEELLPSLLALSHDHK 882 (1176)
T ss_pred HhccccHHH-----HHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHcC-------CHHHHhhhHHHHHHHHHHHHHhhh
Confidence 221 1111 12445555566666778888 88888888775332 333444445567888888999999
Q ss_pred hhHHHHHHHHHHHHh
Q 000184 851 PLLQDKAIEILSRLC 865 (1890)
Q Consensus 851 ~~~~~~a~~~L~~l~ 865 (1890)
..++.+...+|++|.
T Consensus 883 ~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 883 IKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999883
No 273
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=41.96 E-value=14 Score=38.33 Aligned_cols=43 Identities=33% Similarity=0.428 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhc
Q 000184 1513 HSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1567 (1890)
Q Consensus 1513 ~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~ 1567 (1890)
..|++.|+.+ ...-.|.+|+++|+++++++...|+.+|.+-.-
T Consensus 81 ~~Av~LLGtM------------~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 81 AEAVELLGTM------------LGGYNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHHTTS-------------SSTTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHhhc------------cCCCcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 4577777765 455569999999999999999999999997543
No 274
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=41.67 E-value=22 Score=25.96 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCC
Q 000184 1510 DGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSP 1550 (1890)
Q Consensus 1510 ~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~ 1550 (1890)
.+|+.++.+|+++ ....+++.|+..|+++
T Consensus 2 ~vR~~aa~aLg~~------------~~~~a~~~L~~~l~d~ 30 (30)
T smart00567 2 LVRHEAAFALGQL------------GDEEAVPALIKALEDE 30 (30)
T ss_pred HHHHHHHHHHHHc------------CCHhHHHHHHHHhcCC
Confidence 4788999999998 7778889999888763
No 275
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=41.07 E-value=1.5e+02 Score=31.83 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=24.7
Q ss_pred CchhhhhhccCCC-CHHHHHHHHHHHHHhhcc
Q 000184 1538 QAIEPLIPLLDSP-APAVQQLAAELLSHLLLE 1568 (1890)
Q Consensus 1538 ~~i~~Lv~lL~s~-~~~vq~~A~~aL~~l~~~ 1568 (1890)
..++.|+++|+.+ +..+|.++.++||.|+.-
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL 41 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGAL 41 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc
Confidence 3466777778744 689999999999999873
No 276
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=40.16 E-value=2.4e+02 Score=33.31 Aligned_cols=125 Identities=12% Similarity=0.117 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHHhhcChhHHHHHHHcC-chHHHHHhhcCC----CHHHHHHHHHHHHHHHccCchhhHHHHHhCCC
Q 000184 628 TKEETQAKSASALAGIFETRKDLRESSIAVK-TLWSVMKLLDVG----SECILVEASRCLAAIFLSVRENREVAAVARDA 702 (1890)
Q Consensus 628 ~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g-~i~~Lv~lL~~~----~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~ 702 (1890)
..+..+--+.++++|++.+.......+...+ .+...+..+.+. +..++..++..+.|++..........-.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 5677888999999999987543322222222 344444444443 67899999999999975321111000011113
Q ss_pred hHHHHHHh-CC-CCHHHHHHHHHHHHHHhcCchHHHHHHhc-CcHHHHHHHHh
Q 000184 703 LSPLVVLA-GS-PVLEVAEQATCALANLILDSEVSEKAIAE-EIILPATRVLC 752 (1890)
Q Consensus 703 v~~Lv~ll-~~-~~~ev~~~aa~aL~nL~~~~~~~~~~~~~-~~v~~L~~ll~ 752 (1890)
+..+++.+ .. .++|+..+...||++|+..++...+.... ++...+.+..+
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKAN 254 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHh
Confidence 45555533 22 68999999999999999766666666543 44444444443
No 277
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=39.60 E-value=3.7e+02 Score=34.97 Aligned_cols=79 Identities=16% Similarity=0.148 Sum_probs=59.5
Q ss_pred HHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCCh
Q 000184 1388 SVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPD 1466 (1890)
Q Consensus 1388 ~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~ 1466 (1890)
.|+-.+.-++ +++-..+.+ ++.+-.+|.-+++.+|++.--||+-++..+|+.. +++.|-+..++.+.
T Consensus 622 ~avLgiAliAMgeeig~eM~-----lR~f~h~l~yge~~iRravPLal~llsvSNPq~~-------vlDtLsk~shd~D~ 689 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGSEMV-----LRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVN-------VLDTLSKFSHDGDL 689 (878)
T ss_pred chhhhhhhhhhhhhhhhHHH-----HHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcch-------HHHHHHHhccCcch
Confidence 3444444455 455444443 6788889999999999999999999999998866 88999999999888
Q ss_pred hHHHHHHHHHHH
Q 000184 1467 FLCSAFAELLRI 1478 (1890)
Q Consensus 1467 ~v~~~aa~~l~~ 1478 (1890)
++...+..+++-
T Consensus 690 eva~naIfamGL 701 (878)
T KOG2005|consen 690 EVAMNAIFAMGL 701 (878)
T ss_pred HHHHHHHHHhcc
Confidence 777666555543
No 278
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=39.53 E-value=2.2e+02 Score=29.79 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=70.5
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhchh-hHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccc--hh
Q 000184 22 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN--EL 98 (1890)
Q Consensus 22 v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~-~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~--~~ 98 (1890)
+..++++..+.... ++--.....+.+...... +++ .++..+...|+++++.+...|...|..+.+|= ..
T Consensus 2 ~~~~iekAT~~~l~-~~dw~~ileicD~In~~~~~~k-------~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~f 73 (139)
T cd03567 2 LEAWLNKATNPSNR-EEDWEAIQAFCEQINKEPEGPQ-------LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERF 73 (139)
T ss_pred HHHHHHHHcCccCC-CCCHHHHHHHHHHHHcCCccHH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 45667776665433 222334444444444322 222 45677999999999999999999999988653 34
Q ss_pred hHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 000184 99 RVKVLLGGCIPPLLGLLKS------SSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 99 ~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~aL~~ls~ 135 (1890)
+..+...+.+.-|++++.. .+..++......+...+.
T Consensus 74 h~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 74 HSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667777778888898853 457788777777776665
No 279
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.20 E-value=1.7e+03 Score=33.44 Aligned_cols=344 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred CccccchhhhcCChHHHHHHHhccCCC-CchHHHHHHH------HHHHhccCCh--hHHHHHHhcCCHHHHHHhhcCCCH
Q 000184 140 DYVGSKIFSTEGVVPVLWEQLKNGLKS-GNVVDNLLTG------ALRNLSTSTE--GFWAATVQAGGIDILVKLLTLGQS 210 (1890)
Q Consensus 140 ~~~~~~~~~~~g~ip~L~~ll~~~~~~-~~~v~~~~~~------~L~~L~~~~~--~~~~~i~~~g~v~~Lv~lL~~~~~ 210 (1890)
.+.++| +..-+...+++.++..... ...++.++.. +|+.++..+- ..-...+..-....++..|..+++
T Consensus 813 p~v~~k--~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p 890 (2067)
T KOG1822|consen 813 PHVNNK--IRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNP 890 (2067)
T ss_pred cCccHH--HHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCCh
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhh
Q 000184 211 STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINAT 290 (1890)
Q Consensus 211 ~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll 290 (1890)
..+..+..++++++...+ ...+-.+..+.++.-+.+..|+-.|.--.-+|+.+-++.-.....=....++..|..+.
T Consensus 891 ~~rc~~~ea~arLaq~v~---~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~ 967 (2067)
T KOG1822|consen 891 KLRCAAAEALARLAQVVG---SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALA 967 (2067)
T ss_pred HHHHHHHHHHHHHHHhcc---ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHh
Q ss_pred cCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhh
Q 000184 291 IAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIV 370 (1890)
Q Consensus 291 ~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i 370 (1890)
+.+. .+.+|++++.++.-+.....+....+.. -.+...++.+. ........+
T Consensus 968 ~Ds~--------~p~VqtwSL~al~~i~~s~~p~~~~~ve---------------~tlsl~~~lLl-----s~p~~~~ev 1019 (2067)
T KOG1822|consen 968 TDST--------SPVVQTWSLHALALILDSSGPMFRVLVE---------------PTLSLCLKLLL-----SVPTSHVEV 1019 (2067)
T ss_pred hcCC--------CchhhhhHHHHHHHHHcCCCceehhhHH---------------HHHHHHHHHcC-----CCCcchhhh
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhCCCcc--chhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHH
Q 000184 371 EQTLVNQFKPRLPFLVQERTIEALASLYGNPLL--SIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 448 (1890)
Q Consensus 371 ~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~--~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 448 (1890)
.+..-+.+.+++.+. .-..+++.=.+.+-- ...-...-+.-...-++.++++.++..+..+|.++..-.+. .
T Consensus 1020 ~q~~~R~~~~~~~~~---alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr---~ 1093 (2067)
T KOG1822|consen 1020 HQCYNRCFNGDDDED---ALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR---H 1093 (2067)
T ss_pred hhhhccccccchhHH---HHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch---h
Q ss_pred HHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCCh----hcHHHHH---------------hcCCcHHHHHhccCC-C
Q 000184 449 LQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND----DSKWAIT---------------AAGGIPPLVQILESG-S 508 (1890)
Q Consensus 449 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~----~~~~~i~---------------~~g~i~~Lv~lL~~~-~ 508 (1890)
+--.-.|+.|..++.+..--.+.....+|+.+..... +....+. +.|.=-.+..++... +
T Consensus 1094 ~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d 1173 (2067)
T KOG1822|consen 1094 VNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETD 1173 (2067)
T ss_pred ccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchH
Q ss_pred HHHHHHHHHHHHHH
Q 000184 509 AKAKEDSASILRNL 522 (1890)
Q Consensus 509 ~~~~e~a~~aL~~L 522 (1890)
.+..++...+|.++
T Consensus 1174 ~~l~~~I~~tl~~~ 1187 (2067)
T KOG1822|consen 1174 NKLLKNILETLSRM 1187 (2067)
T ss_pred HHHHHHHHHHHHHH
No 280
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.88 E-value=7.1e+02 Score=33.17 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=46.5
Q ss_pred CCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCcc
Q 000184 700 RDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKI 775 (1890)
Q Consensus 700 ~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~ 775 (1890)
..++..|..+.+++-++|+.++..++.+|+++.+..+. .++..|+.-+...++.+...|.--|.+|++..+.
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 34566666666777777777777777777766555442 3455566666666666777777777777665554
No 281
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=37.83 E-value=5.1e+02 Score=38.94 Aligned_cols=264 Identities=12% Similarity=0.079 Sum_probs=150.1
Q ss_pred CcchHHHHHHHHHHHhhhc-CchHHHHHhhhhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchH
Q 000184 584 LPESKVYVLDALKSMLSVV-SFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLW 661 (1890)
Q Consensus 584 ~~~~~~~a~~aL~~L~~~~-~~~~~~~~~~~~~~~i~~Lv~lL~-s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~ 661 (1890)
+..+..+|+..|..++... ...++.. .--...-+.++..++. +.+.++|+-...++.++.....+. +.. +-+
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~-f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~n----IkS-GWk 1223 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELAN-YNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNN----VKS-GWK 1223 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhc-hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh----hhc-CcH
Confidence 4556777888888877632 3333110 0011234788888774 568899999999999888754332 223 445
Q ss_pred HHHHhh----cCCCHHHHHHHHHHHHHHHccCchhh----HHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhc--
Q 000184 662 SVMKLL----DVGSECILVEASRCLAAIFLSVRENR----EVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLIL-- 730 (1890)
Q Consensus 662 ~Lv~lL----~~~~~~v~~~a~~aL~~L~~~~~~~~----~~~~~~~~~v~~Lv~ll~~~-~~ev~~~aa~aL~nL~~-- 730 (1890)
.+..++ .+.++.+...+-..+..+..+.-... ...+ ...+..|....+.. +.++--.|...||++..
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 554444 46677788888888877764321100 0111 22344444444433 35566677777886621
Q ss_pred --CchH---------------------HHH-----------HHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCcc-
Q 000184 731 --DSEV---------------------SEK-----------AIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKI- 775 (1890)
Q Consensus 731 --~~~~---------------------~~~-----------~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~- 775 (1890)
++-. ... ..---++..|.++......++|..|...|.+++.....
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 1000 000 00112233345556666667999999999999864222
Q ss_pred -chhHhhhhhhhccHHHHHHHhhcc----------------C-c--c------cchHHHHHHHHHHHhcCCCCCCCCCcc
Q 000184 776 -DYTITDCVNRAGTVLALVSFLESA----------------S-G--S------VATSEALDALAILSRSGGASGHVKPAW 829 (1890)
Q Consensus 776 -~~~~~~~~~~~g~l~~li~~l~~~----------------~-~--~------v~~~~al~~L~~l~~~~~~~~~~~~~~ 829 (1890)
...+-+ ....+++.|+.+-++.. + . + -....|+..+..|.... ..
T Consensus 1382 Fs~~~W~-~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f--------Fd 1452 (1780)
T PLN03076 1382 FSLPLWE-RVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKF--------YP 1452 (1780)
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 111111 13457888888776532 0 0 0 11134555555553322 11
Q ss_pred ceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHH
Q 000184 830 QVLAEFPKSITPIVSSIADATPLLQDKAIEILSRL 864 (1890)
Q Consensus 830 ~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l 864 (1890)
.+.-..++.+.-|+.|+...|+.+-.-+...|++|
T Consensus 1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~l 1487 (1780)
T PLN03076 1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRL 1487 (1780)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 23334566777888899999999999999999888
No 282
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=36.77 E-value=1.4e+03 Score=34.03 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=81.6
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCCh
Q 000184 624 ILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDAL 703 (1890)
Q Consensus 624 lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v 703 (1890)
+|++.++.++.-++.....++...+.. .+..++..|+..+.+++..-...|+..|..|+...++..+ .-+..+
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~----~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~---~fa~~l 515 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSY----CQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQ---PFATFL 515 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HH----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHH---HTHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHH---HHHHHH
Confidence 678999999999999999999886543 2345788898888888777778999999999865443211 112334
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHH
Q 000184 704 SPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKT 760 (1890)
Q Consensus 704 ~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~ 760 (1890)
..+++.+..-+..--...-..|+.|+.........+.+++-..+-+.+.+.+...++
T Consensus 516 ~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 516 KGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHH
Confidence 445555555554434555777777763322223345566666667777777777655
No 283
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=35.89 E-value=1.8e+02 Score=30.14 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=67.2
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHHHhchh-hHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccc--hhhH
Q 000184 24 QCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN--ELRV 100 (1890)
Q Consensus 24 ~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~-~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~--~~~~ 100 (1890)
+++++..+.....++- .....+.+...... +++ .++..|-+.|+++++.++..|...|..+.++- ..+.
T Consensus 3 ~~i~kATs~~l~~~dw-~~~l~icD~i~~~~~~~k-------~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ 74 (133)
T smart00288 3 RLIDKATSPSLLEEDW-ELILEICDLINSTPDGPK-------DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHL 74 (133)
T ss_pred hHHHHHcCcCCCCcCH-HHHHHHHHHHhCCCccHH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4566665544332232 33333334333322 222 45667889999999999999999999998763 3455
Q ss_pred HHHhcCChHHHHHhhcCCC--HHHHHHHHHHHHHHhc
Q 000184 101 KVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 101 ~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~ls~ 135 (1890)
.+.....+..|+.++.... +.++..+...+.+.+.
T Consensus 75 ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 75 EVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 6667777888888887543 2367777777776655
No 284
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=34.71 E-value=9.6e+02 Score=29.60 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Q 000184 387 QERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNE 442 (1890)
Q Consensus 387 ~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 442 (1890)
+.+.+-.|......|+.-..+. ..++.+|...+..++..|+..|..||..+
T Consensus 354 r~qVLPPLrDV~~RPEvg~tLR-----nkl~Rlmtl~~~~~K~vaAEfLFvLCKes 404 (532)
T KOG4464|consen 354 RQQVLPPLRDVSQRPEVGQTLR-----NKLVRLMTLPDSSVKDVAAEFLFVLCKES 404 (532)
T ss_pred HHhcCCchhhhhcCcchhHHHH-----HhhHhheeccchhhhhhhHHHHHHHhhcc
Confidence 3334444444445555444443 34677888888899999999999999864
No 285
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=33.59 E-value=3.3e+02 Score=31.63 Aligned_cols=85 Identities=22% Similarity=0.331 Sum_probs=56.9
Q ss_pred CcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHH----HHHHH-HHHHhcccccCCccccCChH
Q 000184 1422 RNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSA----FAELL-RILTNNAGIAKGPSAAKVVE 1496 (1890)
Q Consensus 1422 ~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~----aa~~l-~~L~~~~~~~~~~~~~~~v~ 1496 (1890)
++....-.|...|+.+...+ ++++++++++.+++.+-.. ..+-+ +.+++. ..|-++
T Consensus 54 ~~~~~~~~a~~LLaq~re~~-----------A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv--------~~G~~~ 114 (249)
T PF06685_consen 54 EEYNLHFYALYLLAQFREER-----------ALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV--------GDGDIE 114 (249)
T ss_pred cchHHHHHHHHHHHHHhhhh-----------hHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH--------hCCCHH
Confidence 33344456666666666555 8999999998766543222 11111 112222 235699
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHHhhcC
Q 000184 1497 PLFLLLTRSEFGPDGQHSALQVLVNILEH 1525 (1890)
Q Consensus 1497 ~Li~lL~~~~~~~~v~~~al~aL~nl~~~ 1525 (1890)
+|.+++.+++.+.-+|..|+.+|..+...
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~ 143 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHE 143 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHc
Confidence 99999999998899999999999998654
No 286
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=32.23 E-value=4.1e+02 Score=29.78 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=90.9
Q ss_pred HHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc-----CCCHHHHHHHHHHHHHhhccCchh-hHHHHhcCcHHHHHHhh
Q 000184 389 RTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-----MATNEVQEELVRALLKLCNNEGSL-WRALQGREGIQLLISLL 462 (1890)
Q Consensus 389 ~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~-----~~~~~v~~~a~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL 462 (1890)
.|+..|-.++..|+.+..+.++...-.+...|. +.....|..++..+..|..++..+ .+.+...+.+|.+++++
T Consensus 119 naL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 119 NALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 344444455888998888877665434444443 223456778888999888776553 44556778899999999
Q ss_pred CCCCHHHHHHHHHHHHHcccCChhcHHH----HHhcCCc----HHHH-HhccCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 000184 463 GLSSEQQQECSVALLCLLSNENDDSKWA----ITAAGGI----PPLV-QILESGSAKAKEDSASILRNLCNHSEDIRACV 533 (1890)
Q Consensus 463 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~----i~~~g~i----~~Lv-~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i 533 (1890)
+.+++--+.-|+..+..+-. ++..-+. +-.--+| ..++ ++.+.++...-..+.++...||. ++..|..+
T Consensus 199 e~gSElSktvaifI~qkil~-dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~aR~lL 276 (315)
T COG5209 199 ELGSELSKTVAIFIFQKILG-DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPHARALL 276 (315)
T ss_pred HhhhHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHhHHHHH
Confidence 99988888888888888764 4432211 1111122 2222 23344566777788888888876 36666443
No 287
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=32.17 E-value=1e+03 Score=29.07 Aligned_cols=161 Identities=15% Similarity=0.078 Sum_probs=104.6
Q ss_pred hHHHHHhhcCCCHHHHHHHHHHHHHHHc-cCchhhHHHHHhCCC-hHHHHHHhCCCC-------------HHHHHHHHHH
Q 000184 660 LWSVMKLLDVGSECILVEASRCLAAIFL-SVRENREVAAVARDA-LSPLVVLAGSPV-------------LEVAEQATCA 724 (1890)
Q Consensus 660 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~~~~~~~~~-v~~Lv~ll~~~~-------------~ev~~~aa~a 724 (1890)
++.+.+.|.+....+...+++.|.+|+. ......+..+-.-++ .+.+-+++.... +.+|.....-
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888888888888899999999987 433333332222222 234555553221 2677666665
Q ss_pred HHHHh--cCchHHHHHH-hcCcHHHHHHHHhcCCcchHHHHHHHHH-HHhhcCccchhHhhhhhhhccHHHHHHHhhccC
Q 000184 725 LANLI--LDSEVSEKAI-AEEIILPATRVLCEGTISGKTLAAAAIA-RLLHSRKIDYTITDCVNRAGTVLALVSFLESAS 800 (1890)
Q Consensus 725 L~nL~--~~~~~~~~~~-~~~~v~~L~~ll~~~~~~~~~~aa~aL~-~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~ 800 (1890)
+-.++ .++..+.+++ ..+.+..+.+.+..++.++-......|. +++..........-.+....++..+..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 55555 4666777777 4466888889998888776666666666 355554444433333334567788888666555
Q ss_pred c----ccchHHHHHHHHHHHhcCCC
Q 000184 801 G----SVATSEALDALAILSRSGGA 821 (1890)
Q Consensus 801 ~----~v~~~~al~~L~~l~~~~~~ 821 (1890)
+ .+. ..+-+.|..++.+...
T Consensus 218 ~~~~~~~~-~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 218 EDEKSSVA-DLVHEFLLALCTDPKH 241 (330)
T ss_pred CcccchHH-HHHHHHHHHHhcCCCc
Confidence 5 555 8888999998876654
No 288
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=32.13 E-value=7e+02 Score=27.54 Aligned_cols=133 Identities=26% Similarity=0.279 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHcccC-Chh----cHHHHH------hcCCcHHHHH-hccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhC
Q 000184 469 QQECSVALLCLLSNE-NDD----SKWAIT------AAGGIPPLVQ-ILESGSAKAKEDSASILRNLCNHSEDIRACVESA 536 (1890)
Q Consensus 469 v~~~A~~aL~nL~~~-~~~----~~~~i~------~~g~i~~Lv~-lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~ 536 (1890)
+|..|..+|..+++. ++. .+..+. ..+.-+.|+. ++.++++++|-.|+.+|..|-..+..+=....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 456666777766653 111 122222 1224444444 5577899999999999999987543322221111
Q ss_pred C-------------------CHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCC---------CCcHHHHHHHHhcCCcch
Q 000184 537 D-------------------AVPALLWLLKNG-SANGKEIAAKTLNHLIHKSD---------TATISQLTALLTSDLPES 587 (1890)
Q Consensus 537 g-------------------~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~---------~~~i~~L~~lL~~~~~~~ 587 (1890)
. .-..|+..++.. +........++|..|..... +..+.++..++.+.++++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 225566666653 55667777888888877554 244555666788889999
Q ss_pred HHHHHHHHHHHhhh
Q 000184 588 KVYVLDALKSMLSV 601 (1890)
Q Consensus 588 ~~~a~~aL~~L~~~ 601 (1890)
+..+..+++.+.+.
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99998888877664
No 289
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=31.48 E-value=3.8e+02 Score=28.03 Aligned_cols=72 Identities=19% Similarity=0.225 Sum_probs=55.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCc-hhhhHhhccchHHHHHHHHcCCCCHh---HHHHHHHHHHHhhh
Q 000184 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEAS---VRAEAAGALKSLSD 268 (1890)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~---~~~~Aa~aL~~Ls~ 268 (1890)
++..|-+-|.++++.++..|+.+|-.++.+.+ .....+.....+..|.+++.+..... |+..+...+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 46778888999999999999999987775553 45667778888999999888655433 77777777765544
No 290
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=30.41 E-value=3.6e+02 Score=35.62 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=68.1
Q ss_pred hHHHHHHH-hcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHH
Q 000184 617 AVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREV 695 (1890)
Q Consensus 617 ~i~~Lv~l-L~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 695 (1890)
.+|.+-.+ +++.+..++.++..++..+.+. ++.......++++.+-.+..++.+.....++..++....++. +
T Consensus 429 ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g--~ 502 (700)
T KOG2137|consen 429 ILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG--V 502 (700)
T ss_pred HHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc--e
Confidence 36777665 4567888999999999999832 333334455666666678889999999999988887655432 2
Q ss_pred HHHhCCChHHHHHHhCCCCHHHHHH
Q 000184 696 AAVARDALSPLVVLAGSPVLEVAEQ 720 (1890)
Q Consensus 696 ~~~~~~~v~~Lv~ll~~~~~ev~~~ 720 (1890)
.+....++|.++.+...+.-...++
T Consensus 503 ev~~~~VlPlli~ls~~~~L~~~Qy 527 (700)
T KOG2137|consen 503 EVMAENVLPLLIPLSVAPSLNGEQY 527 (700)
T ss_pred eeehhhhhhhhhhhhhcccccHHHH
Confidence 2455678888888877666544443
No 291
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=30.01 E-value=4.4e+02 Score=33.62 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcchhhhhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHH
Q 000184 1755 TQAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVL 1834 (1890)
Q Consensus 1755 ~~~~~~~~la~l~~~~~~~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~ 1834 (1890)
++++++.+=|+.+.+....+ -.-.+++|++-++...++.++..++.+|..|. ..-..+..--..++|..|.
T Consensus 290 ~~V~Aa~A~A~v~l~~lP~K--------LnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li-~~~~~rkp~PndKIvkNLc 360 (441)
T PF12054_consen 290 VRVLAAAASALVALGGLPKK--------LNPIIRPLMDSIKREENELLQQRSAESLARLI-QLCVDRKPCPNDKIVKNLC 360 (441)
T ss_pred HHHHHHHHHHHHHhccCCCC--------ccHHHHHHHHHhhccccHHHHHHHHHHHHHHH-HHHhCCCCCCcHHHHHHHh
Confidence 45555555555555432211 13468888888887779999999999999998 3333444445678889999
Q ss_pred HHhCCCCCC
Q 000184 1835 DLIGSSDPE 1843 (1890)
Q Consensus 1835 ~ll~~~~~~ 1843 (1890)
.++..+..+
T Consensus 361 ~flC~D~se 369 (441)
T PF12054_consen 361 TFLCVDTSE 369 (441)
T ss_pred hhhccCccc
Confidence 999754443
No 292
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.41 E-value=6.9e+02 Score=33.31 Aligned_cols=91 Identities=16% Similarity=0.208 Sum_probs=66.1
Q ss_pred HHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChh
Q 000184 1365 VAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS 1443 (1890)
Q Consensus 1365 ~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~ 1443 (1890)
..-...++.|..+-.++-+.++.+++..++.+. .-+++- ...+..|+.-|.+++..+-..|..-|.+|....|.
T Consensus 300 ~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE-----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 300 ILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE-----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH-----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCc
Confidence 334567777777778888999999999999988 444332 23367788888888889888998888888777776
Q ss_pred hHHHHHHcCcHHHHHHHhccCC
Q 000184 1444 CKLEMVKAGVIESVLDILHEAP 1465 (1890)
Q Consensus 1444 ~~~~l~~~~~i~~L~~lL~~~~ 1465 (1890)
-+.. +++-+-+++..++
T Consensus 375 MK~V-----vi~EIer~~FRpn 391 (988)
T KOG2038|consen 375 MKIV-----VIDEIERLAFRPN 391 (988)
T ss_pred ceee-----hHHHHHHHHcccC
Confidence 6655 4455666665543
No 293
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.52 E-value=3.2e+02 Score=28.60 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=70.8
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhchh-hHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccch--
Q 000184 21 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-- 97 (1890)
Q Consensus 21 ~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~-~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~-- 97 (1890)
.+.+++++..+.....++ -.....+.+..+... .++ .++..|-+.|+++++.++..|...|..+.++-.
T Consensus 5 ~~~~li~kATs~~~~~~D-w~~~l~icD~i~~~~~~~k-------ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~ 76 (140)
T PF00790_consen 5 SITELIEKATSESLPSPD-WSLILEICDLINSSPDGAK-------EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPR 76 (140)
T ss_dssp HHHHHHHHHT-TTSSS---HHHHHHHHHHHHTSTTHHH-------HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH
T ss_pred hHHHHHHHHhCcCCCCCC-HHHHHHHHHHHHcCCccHH-------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 577888888876544333 344445666655543 322 456779999999999999999999999987643
Q ss_pred hhHHHHhcCChHHHHHhhcC-CCHH---HHHHHHHHHHHHhc
Q 000184 98 LRVKVLLGGCIPPLLGLLKS-SSAE---GQIAAAKTIYAVSQ 135 (1890)
Q Consensus 98 ~~~~i~~~g~i~~Lv~lL~~-~~~~---~~~~a~~aL~~ls~ 135 (1890)
.+..+....-+..|..++.+ .... ++..+...+...+.
T Consensus 77 f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 77 FHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 34455555667777777764 3333 67777777766655
No 294
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.95 E-value=2.1e+02 Score=31.40 Aligned_cols=73 Identities=8% Similarity=0.113 Sum_probs=55.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccC
Q 000184 617 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSV 689 (1890)
Q Consensus 617 ~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 689 (1890)
-+|.+.+-|+......+--|......+.......+-...-...|++|-+.|.+.++++...++.+|..|+.+.
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 4788888888877777788888777776652222233445567888889999999999999999999996554
No 295
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=26.88 E-value=1.9e+02 Score=34.53 Aligned_cols=72 Identities=26% Similarity=0.272 Sum_probs=52.3
Q ss_pred CCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccc--cchhccCcH----HHHHHHhc--------CCCHHHHHHHHHH
Q 000184 1537 HQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQ--KDPVTQQVI----GPLIRVLG--------SGIHILQQRAVKA 1602 (1890)
Q Consensus 1537 ~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~--~~l~~~~~i----~~Lv~lL~--------s~~~~v~~~A~~a 1602 (1890)
.-.+|+++.++++.++.+|..++.+|.++...-... ..+...|.. +.|...+. +++..+...|..|
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 446899999999999999999999999998732211 125555544 34444443 5667788899999
Q ss_pred HHHHhc
Q 000184 1603 LVSIAL 1608 (1890)
Q Consensus 1603 L~~l~~ 1608 (1890)
|..+..
T Consensus 198 L~~L~~ 203 (282)
T PF10521_consen 198 LLSLLK 203 (282)
T ss_pred HHHHHH
Confidence 998843
No 296
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=26.66 E-value=5.4e+02 Score=32.01 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=20.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHH
Q 000184 617 AVETMIKILSSTKEETQAKSASAL 640 (1890)
Q Consensus 617 ~i~~Lv~lL~s~~~~~~~~A~~aL 640 (1890)
.+|.++..|.+++..++..||.++
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhhC
Confidence 589999999999999999998775
No 297
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=26.40 E-value=6.6e+02 Score=30.85 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=84.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhc-----C-ChhhHHHHHHHHHHhhCCh
Q 000184 1286 QPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSN-----C-SMELKGDAAELCGVLFGNT 1359 (1890)
Q Consensus 1286 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~-----~-~~~~~~~a~~~l~~L~~~~ 1359 (1890)
..+++.+.+.++..|..| |..|..+.... ..+|.++.++.+. . +........++..-|..|+
T Consensus 181 ~~It~a~~~~~~~~r~~a---L~sL~tD~gl~---------~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 181 EEITEALVGSNEEKRREA---LQSLRTDPGLQ---------QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHhCCCHHHHHHH---HHHhccCCCch---------hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 345555555566666665 55666543221 2567777776543 1 2445566677778888888
Q ss_pred hhHHHHHhhCchHHHHHHHc----------cCChHHHHHHHHHHHhcc-----CCchHHHHHHHcCChHHHHHhhcCC--
Q 000184 1360 RIRSTVAAARCVEPLVSLLV----------TEFSPAQHSVVRALDKLV-----DDEQLAELVAAHGAVIPLVGLLYGR-- 1422 (1890)
Q Consensus 1360 ~~~~~~~~~~~i~~Lv~lL~----------~~~~~~~~~a~~aL~~L~-----~~~~~~~~~~~~gav~~L~~lL~~~-- 1422 (1890)
.+....--...++.++..+- ..+...|..|+..|..++ ..+..+..+ ...|.+.+.++
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri-----~~tl~k~l~d~~~ 323 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRI-----TRTLLKALLDPKK 323 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH-----HHHHHHHHcCCCC
Confidence 77655444456677766652 234589999999999998 223333333 44666555533
Q ss_pred cHhHHHHHHHHHHHhccC
Q 000184 1423 NYMLHEAISRALVKLGKD 1440 (1890)
Q Consensus 1423 ~~~vr~~A~~aL~~l~~~ 1440 (1890)
....+-.|+..|..+|..
T Consensus 324 ~~~~~YGAi~GL~~lG~~ 341 (343)
T cd08050 324 PLTTHYGAIVGLSALGPE 341 (343)
T ss_pred CcchhhHHHHHHHHhCcc
Confidence 334478888888888754
No 298
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=25.52 E-value=3.4e+02 Score=26.60 Aligned_cols=67 Identities=16% Similarity=0.177 Sum_probs=51.8
Q ss_pred cCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHH
Q 000184 452 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASIL 519 (1890)
Q Consensus 452 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL 519 (1890)
.+.+..|++-+..++...+..+...|..+.. ++.....+.+-|+++.|-++=..-++..+...-.++
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456778888888877788899999999985 788888899999999977776666666666554444
No 299
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=25.21 E-value=1.8e+03 Score=29.71 Aligned_cols=157 Identities=19% Similarity=0.097 Sum_probs=98.7
Q ss_pred CCcHHHHHhhhhhcccccCccccccHHHHHHhcCCC------CCCCCchHHHHHHHHHHhh--cCccchhHHHhcCcHHH
Q 000184 1133 YPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPI------PDRPGAPFLALGFLIQLAK--DCPSNKIVMVEAGALEA 1204 (1890)
Q Consensus 1133 ~~~~~~~~~l~~~~~~~~~~~~~~~i~~Lv~~L~~~------~~~~~~~~~A~~~L~~la~--~~~~~r~~i~eag~l~~ 1204 (1890)
.|+.+++..++-...-+...+-.+.++-+++.|..+ .+.....-+|+++++.+-. ..++.-..+++.=.++.
T Consensus 385 spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h 464 (970)
T COG5656 385 SPDLAALFFLIISKSKRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH 464 (970)
T ss_pred ChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 466677777776666666666778888888888422 2344445677888877765 44444455666666777
Q ss_pred HHHHHhcCCcchhHHHHHHHHHH--hhcCHHHHHhhhhcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhh-
Q 000184 1205 LTKYLSLGPQDATEEAATDLLGI--LFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESA- 1281 (1890)
Q Consensus 1205 Lv~~L~~~~~~~q~~a~~~ll~~--l~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~- 1281 (1890)
++..+++...-.+..++.-+-.+ -++++.+ -..+.+.....+++.+..++..||-||..+-.++..-..+.+
T Consensus 465 v~P~f~s~ygfL~Srace~is~~eeDfkd~~i-----ll~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 465 VIPAFRSNYGFLKSRACEFISTIEEDFKDNGI-----LLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred hhHhhcCcccchHHHHHHHHHHHHHhcccchH-----HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 77777776555666666654333 2222222 224566677888888889999999999887766555555543
Q ss_pred -cCChHHHHHHhcc
Q 000184 1282 -RQAVQPLVEILNT 1294 (1890)
Q Consensus 1282 -~~~i~~Lv~lL~~ 1294 (1890)
.+..+.|+.+=+.
T Consensus 540 Vp~tmekLLsLSn~ 553 (970)
T COG5656 540 VPETMEKLLSLSNT 553 (970)
T ss_pred hhHHHHHHHHhccc
Confidence 2333444444333
No 300
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.75 E-value=93 Score=38.50 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=63.6
Q ss_pred chHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHHHHhCCCCCCchHHHHHHHHHHhccchh
Q 000184 1785 SACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTI 1861 (1890)
Q Consensus 1785 ~~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~ 1861 (1890)
+-+..+.+.+...+++++++.|..++.++.-..+++++.+.+...-.-+++++--+.++-...++++++.+..|.-+
T Consensus 327 K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~eil 403 (763)
T KOG4231|consen 327 KDMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGENEIL 403 (763)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhhHHH
Confidence 45666777777767999999999999999977788888888888888899999988888777788888888766433
No 301
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=24.42 E-value=1.8e+02 Score=30.54 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=30.0
Q ss_pred cHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHH
Q 000184 1423 NYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLR 1477 (1890)
Q Consensus 1423 ~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~ 1477 (1890)
...-+..|+.-|+.|-... -+.+|+++|.++++.+...++++|.
T Consensus 76 ~~Is~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk 119 (154)
T PF11791_consen 76 PLISPAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALK 119 (154)
T ss_dssp TTB-HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHH
T ss_pred CCcCHHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3345778888888887775 5789999997777777888887774
No 302
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=24.34 E-value=2.7e+02 Score=39.00 Aligned_cols=175 Identities=18% Similarity=0.163 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHhcc--CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHH---HHcCcHHHH
Q 000184 1383 SPAQHSVVRALDKLV--DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEM---VKAGVIESV 1457 (1890)
Q Consensus 1383 ~~~~~~a~~aL~~L~--~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l---~~~~~i~~L 1457 (1890)
..+|+.++++|..+. -++...+.. ++-+..++..++-++|..-...+..... .+..+ ....+++..
T Consensus 143 apVre~caq~L~~~l~~~~~s~~~~~-----~~il~q~~~q~~w~ir~Ggll~iky~~a----ir~d~l~~~~~~vl~~~ 213 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLIKET-----LDILLQMLRQPNWEIRHGGLLGIKYNVA----IRQDLLFQLLNLVLDFV 213 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhhHHH-----HHHHHHHHcCcchhheechHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 356666666666665 333333332 5556666665555554443333322111 11111 223477888
Q ss_pred HHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHH-HHHHhhcCCCccccc--cc
Q 000184 1458 LDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQ-VLVNILEHPQCRADY--SL 1534 (1890)
Q Consensus 1458 ~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~-aL~nl~~~~~~~~~~--~~ 1534 (1890)
++.|.+.++.++..++..+..............-.+.+..+...+...+. ...-.+.+. -|..+..+++..... ..
T Consensus 214 i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n 292 (1549)
T KOG0392|consen 214 IEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQN 292 (1549)
T ss_pred HhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 88999999999988887775444333111111123345555555544331 111111222 222333332222111 11
Q ss_pred ccCCchhhhhhccCCCCHHHHHHHHHHHHHhhc
Q 000184 1535 TSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLL 1567 (1890)
Q Consensus 1535 ~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~ 1567 (1890)
...+.+|.++.++.+.-..++..++..+..+..
T Consensus 293 ~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle 325 (1549)
T KOG0392|consen 293 LEVGLVPRLWPFLRHTISSVRRAALETLAMLLE 325 (1549)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 235778999999999888899999998888876
No 303
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.77 E-value=1e+03 Score=26.31 Aligned_cols=107 Identities=17% Similarity=0.101 Sum_probs=65.1
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHh---hcCCCH-HH---HHHHHHHHHHHHcc
Q 000184 616 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKL---LDVGSE-CI---LVEASRCLAAIFLS 688 (1890)
Q Consensus 616 ~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~l---L~~~~~-~v---~~~a~~aL~~L~~~ 688 (1890)
..+|.|+.|..++++.++..|-..+..+....+...+.-...|+ ..-..+ +..+.. .. .......+..+..+
T Consensus 45 ~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~gi-~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~ 123 (187)
T PF12830_consen 45 QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSEGI-RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRS 123 (187)
T ss_pred HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHhcCCccccccccchHHHHHHHHHHhc
Confidence 35899999999999999999999999999887766544333332 222222 222211 11 56677777788765
Q ss_pred CchhhHHHHHhCCChHHHHHHhCCC--------CHHHHHHHHHHHHHHh
Q 000184 689 VRENREVAAVARDALSPLVVLAGSP--------VLEVAEQATCALANLI 729 (1890)
Q Consensus 689 ~~~~~~~~~~~~~~v~~Lv~ll~~~--------~~ev~~~aa~aL~nL~ 729 (1890)
.+ ..|. +.+..|++.+... ..+-.........||+
T Consensus 124 ~r-~~R~-----~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nLA 166 (187)
T PF12830_consen 124 NR-KSRR-----KFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENLA 166 (187)
T ss_pred cc-HhHH-----HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHh
Confidence 43 3333 3455666665442 2333345555555555
No 304
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.72 E-value=91 Score=36.96 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=55.4
Q ss_pred HHHHHHHHhhccCchhhHHHHhcCcHHHHHHhh--CCCCHHHHHHHHHHHHHcccCChhcHHHHHhc
Q 000184 430 ELVRALLKLCNNEGSLWRALQGREGIQLLISLL--GLSSEQQQECSVALLCLLSNENDDSKWAITAA 494 (1890)
Q Consensus 430 ~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~ 494 (1890)
+..+.+.+||+.++.....+.+-||++.+++-. .+.+|-+++...-++++|...+.+|++.+.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 367789999999999999999999999888744 45689999999999999998888888777643
No 305
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.48 E-value=2.6e+03 Score=30.65 Aligned_cols=331 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHhcCCCHHHHHHHHHHHHH---hhccCchhhHHHHhcCcHHHHHHhhCCC----------CHHHHHHHHHHHHHcccCC
Q 000184 418 GLITMATNEVQEELVRALLK---LCNNEGSLWRALQGREGIQLLISLLGLS----------SEQQQECSVALLCLLSNEN 484 (1890)
Q Consensus 418 ~lL~~~~~~v~~~a~~aL~~---L~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~v~~~A~~aL~nL~~~~ 484 (1890)
.+|+++|.++|...+.|+.. ++.-...+... .-......++..+..- ...+.+..+++-.++....
T Consensus 57 ~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l 135 (1266)
T KOG1525|consen 57 FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLL 135 (1266)
T ss_pred HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeec
Q ss_pred hhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 000184 485 DDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 564 (1890)
Q Consensus 485 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L 564 (1890)
++....+.+ ....+..++..+.++-..+-..++..+-...+.....++.- .+..|+.--++..+.....|-..+..+
T Consensus 136 ~d~~e~~~~--~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~-ll~~lv~~~~~~~~~a~~la~~li~~~ 212 (1266)
T KOG1525|consen 136 EDCQELVHE--LFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDV-LLENLVKPGRDTIKEADKLASDLIERC 212 (1266)
T ss_pred cchHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHH-HHHHhccCCCCccHHHHHHHHHHHHHh
Q ss_pred hcCCCCCcHHHHHHHHhcCC---cchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHH
Q 000184 565 IHKSDTATISQLTALLTSDL---PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALA 641 (1890)
Q Consensus 565 ~~~~~~~~i~~L~~lL~~~~---~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~ 641 (1890)
+.+-++..-.-+..-+.... -..+...-+.+..|-..++.-- .+.+|.|-.-|.+.++.+|..|...++
T Consensus 213 a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll--------~~vip~l~~eL~se~~~~Rl~a~~lvg 284 (1266)
T KOG1525|consen 213 ADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLL--------LAVIPQLEFELLSEQEEVRLKAVKLVG 284 (1266)
T ss_pred hhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHhcchHHHHHHHHHHHH
Q ss_pred HHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHH
Q 000184 642 GIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQA 721 (1890)
Q Consensus 642 ~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~a 721 (1890)
.+.......-. =.........+.-+.+.+.+++.++....-.....+++..+. .+....+.....+++..++...
T Consensus 285 ~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~----~~~~~~l~~~~~D~~~rir~~v 359 (1266)
T KOG1525|consen 285 RMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA----STILLALRERDLDEDVRVRTQV 359 (1266)
T ss_pred HHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH----HHHHHHHHhhcCChhhhheeeE
Q ss_pred HHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000184 722 TCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARL 769 (1890)
Q Consensus 722 a~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L 769 (1890)
+...+... .....++.. ++..+.+-+++....+|..|...|..+
T Consensus 360 ~i~~~~v~---~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~Laql 403 (1266)
T KOG1525|consen 360 VIVACDVM---KFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQL 403 (1266)
T ss_pred EEEEeehh---HhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHH
No 306
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.43 E-value=1.6e+02 Score=32.64 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=55.3
Q ss_pred hhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChh
Q 000184 1540 IEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPN 1612 (1890)
Q Consensus 1540 i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~ 1612 (1890)
++.++++..+++..+|..|+..+..+.. ++-..-..+++.|+.+..|.++.++..|...+..+....+.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~----qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILR----QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh----cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 5566677778999999999999998775 22333345679999999999999999999999999775543
No 307
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=21.81 E-value=1.5e+03 Score=27.60 Aligned_cols=211 Identities=18% Similarity=0.112 Sum_probs=106.1
Q ss_pred CHHHHHHHhhc-CChhHHHHHHHHHHHHhcCC----CCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhh
Q 000184 538 AVPALLWLLKN-GSANGKEIAAKTLNHLIHKS----DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 612 (1890)
Q Consensus 538 ~i~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~----~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 612 (1890)
++..|..++.. +++........++..-+..- ++..+..+..-+.+..+.+|..-..+++............. .
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~-~- 100 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK-F- 100 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH-H-
Confidence 44555555544 45555655555555444322 23444555555666666677777777776554111111111 1
Q ss_pred hhcchHHHHHHHhc----CCCHHHH---HHHHHHHHHHhhcChhHHHH------HHHcCchHHHH---HhhcC-CCHHHH
Q 000184 613 AANDAVETMIKILS----STKEETQ---AKSASALAGIFETRKDLRES------SIAVKTLWSVM---KLLDV-GSECIL 675 (1890)
Q Consensus 613 ~~~~~i~~Lv~lL~----s~~~~~~---~~A~~aL~~L~~~~~~~~~~------~~~~g~i~~Lv---~lL~~-~~~~v~ 675 (1890)
-..-+|.|++.++ ++.+..+ -.++.++..+.....+..+. ....+-=|.++ +.... .+++..
T Consensus 101 -~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~ 179 (339)
T PF12074_consen 101 -AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEEDL 179 (339)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHhHH
Confidence 1234677777664 3333222 12232322222111110000 00001011110 22222 455667
Q ss_pred HHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCC--CHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhc
Q 000184 676 VEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP--VLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE 753 (1890)
Q Consensus 676 ~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~--~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~ 753 (1890)
...++++..+..+..+...... ...+-..++.++-++ ..++|+.|..++..+....+.. +...++..+.+++..
T Consensus 180 ~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 180 CWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHh
Confidence 7788888888765543221111 234667788888888 8999999999999988443322 445566666666655
Q ss_pred CC
Q 000184 754 GT 755 (1890)
Q Consensus 754 ~~ 755 (1890)
..
T Consensus 256 ~~ 257 (339)
T PF12074_consen 256 SE 257 (339)
T ss_pred cc
Confidence 44
No 308
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.59 E-value=2.2e+03 Score=31.26 Aligned_cols=111 Identities=16% Similarity=0.105 Sum_probs=63.0
Q ss_pred ChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccC---CCCHHHHHHHHHHHHHhhcccc
Q 000184 1494 VVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD---SPAPAVQQLAAELLSHLLLEEQ 1570 (1890)
Q Consensus 1494 ~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~---s~~~~vq~~A~~aL~~l~~~~~ 1570 (1890)
.+.+...+.....-+.+++.+.+.+|.++++.+...... .-..+++.|=.+.+ .....+...+...|..+..|
T Consensus 841 ~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~--~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssD-- 916 (1610)
T KOG1848|consen 841 MLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLH--GWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSD-- 916 (1610)
T ss_pred HHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhcc--ccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhc--
Confidence 345555555444556888999999999998775544332 11222222222222 23555666777777766653
Q ss_pred cccchh---ccCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhc
Q 000184 1571 LQKDPV---TQQVIGPLIRVL-GSGIHILQQRAVKALVSIAL 1608 (1890)
Q Consensus 1571 ~~~~l~---~~~~i~~Lv~lL-~s~~~~v~~~A~~aL~~l~~ 1608 (1890)
+-.-+- -.+.++.+..+- +..+..+-..|+.-+..+++
T Consensus 917 fLqSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 917 FLQSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred chhcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 111111 124455555555 34677788888888888864
No 309
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=21.48 E-value=1.8e+03 Score=28.39 Aligned_cols=248 Identities=14% Similarity=0.062 Sum_probs=124.7
Q ss_pred hhHHHHHHHHHHHHhcCCCC-CcH-HH-HHHHHhc-CCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhc
Q 000184 551 ANGKEIAAKTLNHLIHKSDT-ATI-SQ-LTALLTS-DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS 626 (1890)
Q Consensus 551 ~~~~~~Aa~aL~~L~~~~~~-~~i-~~-L~~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~ 626 (1890)
++.+..+...|..+..+.+. ... .. +-..+.. ..++.-..-.++|..|+..+..-+. -.++..|.|...+.
T Consensus 43 ~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~~-----~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 43 SEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGRDIDF-----FEYEIGPFLLSWLE 117 (464)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCchh-----cccchHHHHHHHHH
Confidence 35666666666666665543 111 11 2222322 2333334456666666654433221 12344555555553
Q ss_pred CC---------------------------CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh-cCCCHHHHHHH
Q 000184 627 ST---------------------------KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEA 678 (1890)
Q Consensus 627 s~---------------------------~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a 678 (1890)
.. ++..-......+.++.+-+...-+.-.-.+.+..++.+. .+.++.....+
T Consensus 118 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~ 197 (464)
T PF11864_consen 118 PSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEAC 197 (464)
T ss_pred HHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 11 111222233344444444332222223345566666664 34444455666
Q ss_pred HHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCc--
Q 000184 679 SRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTI-- 756 (1890)
Q Consensus 679 ~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~-- 756 (1890)
+..+-.+.....=+... + ...+..|....... +..+.+-.++.||+...-. ..++..|...+++.++
T Consensus 198 L~vldaii~y~~iP~~s-l--~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g------~~~i~~L~~iL~~~~~~~ 266 (464)
T PF11864_consen 198 LSVLDAIITYGDIPSES-L--SPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG------HSAIRTLCDILRSPDPQN 266 (464)
T ss_pred HHHHHHHHHcCcCChHH-H--HHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH------HHHHHHHHHHHcccCccc
Confidence 66666665422101111 1 12344444442222 5667777788888743322 3466777788843322
Q ss_pred ----chHHHHHHHHHHHhhcCccchhHhhhhhhh--ccHHHHHHHhhccCcccchHHHHHHHHHHHh
Q 000184 757 ----SGKTLAAAAIARLLHSRKIDYTITDCVNRA--GTVLALVSFLESASGSVATSEALDALAILSR 817 (1890)
Q Consensus 757 ----~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~--g~l~~li~~l~~~~~~v~~~~al~~L~~l~~ 817 (1890)
.+-++|...+..+++....+. +.. +... ..++.+...+++.+..+. -+.+..+.+++.
T Consensus 267 ~~~~~~lRGAv~~l~~ll~~~~~~~-~~~-l~~~~~~vl~sl~~al~~~~~~v~-~eIl~~i~~ll~ 330 (464)
T PF11864_consen 267 KRDINVLRGAVFFLRMLLWGSGEQG-YPS-LPFSPSSVLPSLLNALKSNSPRVD-YEILLLINRLLD 330 (464)
T ss_pred cccHHHHhhHHHHHHHHHhccccCC-cce-ecccHHHHHHHHHHHHhCCCCeeh-HHHHHHHHHHHh
Confidence 245688888888887652221 111 1112 277778888887777666 788888888874
No 310
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.39 E-value=1.6e+03 Score=27.83 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHh-h--CCCCHHHHHHHHHHHHHcccCChh------------cHHH
Q 000184 426 EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL-L--GLSSEQQQECSVALLCLLSNENDD------------SKWA 490 (1890)
Q Consensus 426 ~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l-L--~~~~~~v~~~A~~aL~nL~~~~~~------------~~~~ 490 (1890)
..|..|+..+..|+...+.....+.. +.+..++.- - .+.+..-+..|...+..|+..... +-..
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 44566777777777542221111110 122222221 1 134667778888888888753321 1233
Q ss_pred HHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHH
Q 000184 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTL 561 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL 561 (1890)
+...-.+|-|. --.+..+-++..|++.+...-..-+ +..+ .+.+|.++..|.+++.-+...||.++
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--KEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--HHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33444555544 1123467788888888888876432 2222 24889999999998888888888764
No 311
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=21.38 E-value=50 Score=32.46 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=43.6
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHhhcCCchhHHHHHhcCcHHHHHHHhCCCCCCchHHHHHHHHHHh
Q 000184 1787 CRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLF 1856 (1890)
Q Consensus 1787 ~~~Lv~lL~~~~~~~~r~~A~~aL~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~a~~~l~~l~ 1856 (1890)
-..|+.||.++ +++||..|+..+..+. -..+...|.++-++.-....+.|..+|+.|+
T Consensus 49 r~aLl~LL~hp-n~~VRl~AA~~~L~~~-----------p~eA~~~Le~ia~~~~~~~a~~a~~~l~~ld 106 (106)
T PF09450_consen 49 RDALLPLLKHP-NMQVRLWAAAHTLRYA-----------PEEARKVLEEIASSKWFPQAGDAGMCLRNLD 106 (106)
T ss_dssp GGGGGGGGGSS--HHHHHHHHHTTTTT------------HHHHHHHHHHHHHHT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-ChhHHHHHHHHHHHhC-----------HHHHHHHHHHHHHcCCCCCCCcHHHHHHhcC
Confidence 56789999995 9999999998855443 2334567888888888889999999998775
No 312
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=20.47 E-value=92 Score=30.79 Aligned_cols=42 Identities=29% Similarity=0.387 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhccchhhHHHHhcCChHHHHHhhcCCCHHHHH
Q 000184 83 IQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQI 124 (1890)
Q Consensus 83 ~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 124 (1890)
-.....|..++..++....+++.|+++.|+++|.+++.+...
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 445567778888888888899999999999999999988753
No 313
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=20.14 E-value=2.6e+02 Score=27.80 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCc
Q 000184 1344 LKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRN 1423 (1890)
Q Consensus 1344 ~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~ 1423 (1890)
++..+...=..+..|.+.|.+..+.- -+++. ++--.......+..++..|+.-..+++.|+++.|+.||.+.|
T Consensus 28 lkklvl~fek~i~kN~e~R~K~~ddP-----~KFmd--SE~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN 100 (108)
T PF08216_consen 28 LKKLVLSFEKRINKNQEMRIKYPDDP-----EKFMD--SEVDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHEN 100 (108)
T ss_pred HHHHHHHHHHHHHHhHHHHHhCCCCH-----HHHHH--hHHHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCC
Confidence 33444444344445555444433222 33443 344566677888889988888888889999999999999998
Q ss_pred HhHH
Q 000184 1424 YMLH 1427 (1890)
Q Consensus 1424 ~~vr 1427 (1890)
..+.
T Consensus 101 ~DIa 104 (108)
T PF08216_consen 101 TDIA 104 (108)
T ss_pred ccee
Confidence 7753
Done!