Query 000184
Match_columns 1890
No_of_seqs 793 out of 3660
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 23:20:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 5.7E-49 2E-53 513.5 64.9 711 16-820 2-785 (810)
2 3now_A UNC-45 protein, SD10334 100.0 5.7E-38 2E-42 410.0 56.5 663 23-775 52-786 (810)
3 1jdh_A Beta-catenin; beta-cate 100.0 1.2E-37 4E-42 408.8 47.1 505 64-728 16-528 (529)
4 2z6h_A Catenin beta-1, beta-ca 100.0 1.9E-37 6.6E-42 414.5 49.0 528 64-756 13-551 (644)
5 2z6g_A B-catenin; FULL-length, 100.0 2.1E-37 7.1E-42 419.5 49.5 561 21-755 116-686 (780)
6 2z6g_A B-catenin; FULL-length, 100.0 2.8E-37 9.7E-42 418.1 44.5 544 64-774 114-666 (780)
7 1jdh_A Beta-catenin; beta-cate 100.0 6.9E-37 2.3E-41 401.5 44.9 509 103-770 14-529 (529)
8 2z6h_A Catenin beta-1, beta-ca 100.0 3.3E-36 1.1E-40 402.5 46.0 511 103-774 11-530 (644)
9 3ul1_B Importin subunit alpha- 100.0 2.9E-36 9.9E-41 390.2 37.8 416 412-869 58-481 (510)
10 3tpo_A Importin subunit alpha- 100.0 1.9E-35 6.6E-40 385.0 39.7 417 411-869 76-500 (529)
11 3ul1_B Importin subunit alpha- 100.0 1.5E-32 5.2E-37 355.4 43.2 410 197-731 58-479 (510)
12 3tpo_A Importin subunit alpha- 100.0 1E-31 3.5E-36 349.8 45.0 411 196-731 76-498 (529)
13 3l6x_A Catenin delta-1; cateni 100.0 1.4E-32 4.8E-37 348.4 35.4 400 103-569 45-479 (584)
14 3l6x_A Catenin delta-1; cateni 100.0 9.1E-32 3.1E-36 341.0 35.3 380 194-704 46-491 (584)
15 4b8j_A Importin subunit alpha- 100.0 4.2E-31 1.4E-35 345.7 42.1 416 411-868 74-498 (528)
16 1wa5_B Importin alpha subunit; 100.0 1.2E-30 4.3E-35 341.1 42.5 422 409-869 85-513 (530)
17 4b8j_A Importin subunit alpha- 100.0 4.1E-30 1.4E-34 336.3 45.1 410 196-731 74-497 (528)
18 3nmz_A APC variant protein; pr 100.0 1.6E-31 5.3E-36 332.7 28.9 367 107-568 33-452 (458)
19 3nmz_A APC variant protein; pr 100.0 8.2E-31 2.8E-35 326.2 33.0 392 198-692 34-455 (458)
20 1xm9_A Plakophilin 1; armadill 100.0 1.9E-30 6.5E-35 330.2 34.9 419 107-569 3-452 (457)
21 1wa5_B Importin alpha subunit; 100.0 1.8E-29 6.3E-34 330.0 44.5 415 194-733 85-513 (530)
22 2jdq_A Importin alpha-1 subuni 100.0 9.1E-29 3.1E-33 317.1 42.2 411 197-733 21-446 (450)
23 1xm9_A Plakophilin 1; armadill 100.0 1E-29 3.5E-34 323.5 31.6 358 371-735 4-454 (457)
24 2jdq_A Importin alpha-1 subuni 100.0 5.8E-29 2E-33 318.9 38.3 417 412-869 21-446 (450)
25 3nmw_A APC variant protein; AR 99.9 5E-26 1.7E-30 275.6 26.8 270 426-734 47-338 (354)
26 3nmw_A APC variant protein; AR 99.9 6.1E-26 2.1E-30 274.8 27.1 275 386-694 48-341 (354)
27 3opb_A SWI5-dependent HO expre 99.9 4.7E-23 1.6E-27 263.0 44.1 552 65-714 168-760 (778)
28 3opb_A SWI5-dependent HO expre 99.9 2.5E-23 8.6E-28 265.5 40.6 422 211-730 227-728 (778)
29 4hxt_A De novo protein OR329; 99.9 1.7E-21 5.8E-26 228.0 28.9 243 411-690 2-244 (252)
30 1u6g_C TIP120 protein, CAND1; 99.9 4.4E-19 1.5E-23 255.5 60.3 1003 385-1615 21-1139(1230)
31 4hxt_A De novo protein OR329; 99.9 1.6E-21 5.4E-26 228.3 27.8 241 453-731 2-242 (252)
32 1u6g_C TIP120 protein, CAND1; 99.9 2E-19 6.8E-24 259.1 50.4 1045 412-1713 7-1155(1230)
33 4db8_A Armadillo-repeat protei 99.9 2.7E-21 9.3E-26 226.4 24.2 240 411-687 12-251 (252)
34 4fdd_A Transportin-1; heat rep 99.9 2.4E-19 8.3E-24 248.1 47.6 748 17-864 10-822 (852)
35 4db8_A Armadillo-repeat protei 99.9 4.1E-21 1.4E-25 224.9 22.5 240 453-730 12-251 (252)
36 1b3u_A Protein (protein phosph 99.8 5.8E-19 2E-23 234.3 34.8 569 1202-1814 12-586 (588)
37 4fdd_A Transportin-1; heat rep 99.8 1.2E-18 4.1E-23 241.2 37.5 708 66-869 11-787 (852)
38 1b3u_A Protein (protein phosph 99.8 2.3E-17 7.9E-22 218.8 46.5 573 18-729 8-586 (588)
39 4db6_A Armadillo repeat protei 99.8 1.1E-18 3.8E-23 197.9 24.0 199 410-645 11-209 (210)
40 4db6_A Armadillo repeat protei 99.8 1.5E-18 5E-23 196.9 24.1 200 451-687 10-209 (210)
41 3tt9_A Plakophilin-2; cell adh 99.8 1.4E-18 4.7E-23 195.2 17.5 196 454-688 9-230 (233)
42 3tt9_A Plakophilin-2; cell adh 99.8 3.6E-18 1.2E-22 191.8 18.6 196 370-567 9-230 (233)
43 1qgr_A Protein (importin beta 99.8 8.5E-16 2.9E-20 214.1 46.9 779 22-913 3-873 (876)
44 1xqr_A HSPBP1 protein; armadil 99.8 1.9E-17 6.3E-22 195.0 25.0 226 467-731 54-288 (296)
45 2bpt_A Importin beta-1 subunit 99.8 4.8E-14 1.6E-18 196.0 60.3 765 20-864 4-855 (861)
46 2bpt_A Importin beta-1 subunit 99.7 2.2E-14 7.5E-19 199.5 50.0 751 68-911 7-857 (861)
47 1xqr_A HSPBP1 protein; armadil 99.7 3.7E-17 1.3E-21 192.5 18.0 182 386-567 56-239 (296)
48 3grl_A General vesicular trans 99.7 7.8E-14 2.7E-18 173.5 40.9 464 237-798 20-528 (651)
49 1qgr_A Protein (importin beta 99.7 1.2E-13 4E-18 192.5 45.4 748 69-967 5-873 (876)
50 3grl_A General vesicular trans 99.6 5.8E-13 2E-17 165.8 36.5 442 107-668 22-527 (651)
51 2vgl_B AP-2 complex subunit be 99.6 1.9E-12 6.4E-17 170.2 41.6 517 64-734 12-536 (591)
52 2vgl_B AP-2 complex subunit be 99.6 6.1E-13 2.1E-17 174.9 35.1 500 372-964 16-531 (591)
53 1oyz_A Hypothetical protein YI 99.5 3.6E-13 1.2E-17 159.8 24.3 259 1238-1564 19-279 (280)
54 1oyz_A Hypothetical protein YI 99.5 5.9E-13 2E-17 158.0 23.2 257 1280-1605 20-279 (280)
55 1w63_A Adapter-related protein 99.5 1.1E-10 3.9E-15 153.7 43.6 521 21-733 35-580 (618)
56 1w63_A Adapter-related protein 99.4 5.3E-11 1.8E-15 156.9 31.4 513 1286-1864 37-584 (618)
57 3ltm_A Alpha-REP4; protein eng 99.4 5.2E-12 1.8E-16 142.8 17.9 189 1367-1610 17-205 (211)
58 3ltj_A Alpharep-4; protein eng 99.3 1.2E-11 4.1E-16 138.7 17.6 186 1367-1607 12-197 (201)
59 3ltm_A Alpha-REP4; protein eng 99.3 4.3E-11 1.5E-15 135.2 18.8 154 1409-1607 18-171 (211)
60 3ltj_A Alpharep-4; protein eng 99.3 9.5E-11 3.2E-15 131.3 19.8 152 1411-1607 15-166 (201)
61 1ibr_B P95, importin beta-1 su 99.2 2.7E-10 9.4E-15 145.6 21.8 384 1205-1610 6-439 (462)
62 2vgl_A Adaptor protein complex 99.1 2.6E-07 8.9E-12 121.1 45.3 528 21-731 36-590 (621)
63 1ibr_B P95, importin beta-1 su 99.0 3.6E-08 1.2E-12 125.8 28.7 382 457-866 5-437 (462)
64 2vgl_A Adaptor protein complex 99.0 3.8E-07 1.3E-11 119.6 35.7 474 411-964 74-588 (621)
65 4ady_A RPN2, 26S proteasome re 98.9 8.1E-05 2.8E-09 97.9 51.6 325 387-769 375-717 (963)
66 4gmo_A Putative uncharacterize 98.7 1.3E-06 4.5E-11 116.0 29.8 194 1242-1438 34-257 (684)
67 4ady_A RPN2, 26S proteasome re 98.7 1.9E-06 6.4E-11 113.2 30.2 297 1249-1609 365-677 (963)
68 4gmo_A Putative uncharacterize 98.6 1.9E-07 6.5E-12 124.1 13.6 214 453-686 34-257 (684)
69 3b2a_A TON_1937, putative unch 98.3 9.3E-06 3.2E-10 87.0 15.8 226 614-864 31-259 (265)
70 1te4_A Conserved protein MTH18 98.3 1.4E-07 4.9E-12 97.0 0.8 121 1409-1565 11-131 (131)
71 1te4_A Conserved protein MTH18 98.2 2.8E-07 9.6E-12 94.8 1.0 122 1367-1522 10-131 (131)
72 1ho8_A Vacuolar ATP synthase s 98.1 0.00063 2.2E-08 82.4 27.8 347 64-481 76-475 (480)
73 2x19_B Importin-13; nuclear tr 98.1 0.13 4.3E-06 71.7 57.3 225 18-269 22-269 (963)
74 3b2a_A TON_1937, putative unch 98.1 0.00017 5.7E-09 77.5 19.3 219 1367-1606 31-259 (265)
75 3tjz_B Coatomer subunit gamma; 98.1 0.00012 4.1E-09 87.1 20.2 281 412-726 69-349 (355)
76 1wa5_C Importin alpha RE-expor 98.1 0.019 6.4E-07 79.8 46.0 248 425-686 375-669 (960)
77 3tjz_B Coatomer subunit gamma; 97.9 6.4E-05 2.2E-09 89.4 14.9 266 1332-1633 73-339 (355)
78 2x1g_F Cadmus; transport prote 97.9 0.018 6.2E-07 80.2 41.8 592 19-688 6-723 (971)
79 2db0_A 253AA long hypothetical 97.9 0.00061 2.1E-08 69.7 18.7 214 1281-1523 30-245 (253)
80 2x1g_F Cadmus; transport prote 97.9 0.017 5.9E-07 80.5 40.8 705 74-864 16-856 (971)
81 2qk2_A LP04448P; mini spindles 97.9 0.00014 4.7E-09 83.4 15.5 187 415-646 19-206 (242)
82 2qk2_A LP04448P; mini spindles 97.8 0.0003 1E-08 80.6 17.4 177 540-729 18-204 (242)
83 2db0_A 253AA long hypothetical 97.8 0.0012 4.2E-08 67.4 19.0 214 450-687 29-246 (253)
84 2x19_B Importin-13; nuclear tr 97.7 0.16 5.4E-06 70.7 44.9 216 547-772 459-715 (963)
85 1wa5_C Importin alpha RE-expor 97.6 0.24 8.3E-06 68.6 44.5 549 156-772 7-671 (960)
86 2qk1_A Protein STU2; STU2P, XM 97.6 0.00022 7.5E-09 81.7 10.9 192 1414-1608 20-220 (249)
87 1ho8_A Vacuolar ATP synthase s 97.6 0.0079 2.7E-07 72.9 24.6 339 371-729 79-475 (480)
88 2iw3_A Elongation factor 3A; a 97.5 0.0019 6.3E-08 86.5 20.8 290 418-729 21-323 (986)
89 4hat_C Exportin-1; heat repeat 97.5 0.77 2.6E-05 63.1 50.2 499 19-569 15-621 (1023)
90 3ibv_A Exportin-T; karyopherin 97.5 0.81 2.8E-05 62.8 48.8 226 19-270 5-262 (980)
91 2qk1_A Protein STU2; STU2P, XM 97.5 0.0012 4.2E-08 75.5 15.5 201 1497-1713 20-236 (249)
92 3m1i_C Exportin-1; heat repeat 97.2 1.6 5.6E-05 60.8 45.9 221 18-269 14-264 (1049)
93 4hat_C Exportin-1; heat repeat 97.1 1.4 4.7E-05 60.7 42.6 225 67-319 18-263 (1023)
94 2iw3_A Elongation factor 3A; a 96.8 0.087 3E-06 70.6 25.3 278 387-686 31-323 (986)
95 1lrv_A LRV, leucine-rich repea 96.8 0.0015 5.2E-08 73.7 7.4 153 1362-1604 67-219 (244)
96 3m1i_C Exportin-1; heat repeat 96.7 1.4 4.8E-05 61.6 37.7 521 170-773 32-620 (1049)
97 1lrv_A LRV, leucine-rich repea 96.5 0.0017 5.9E-08 73.2 5.3 165 1413-1684 77-241 (244)
98 3dad_A FH1/FH2 domain-containi 96.5 0.11 3.7E-06 60.0 19.6 181 618-799 120-317 (339)
99 3dad_A FH1/FH2 domain-containi 96.5 0.046 1.6E-06 63.1 16.4 138 386-524 134-286 (339)
100 3ibv_A Exportin-T; karyopherin 95.8 1.7 5.8E-05 59.6 29.9 454 423-912 20-567 (980)
101 3oc3_A Helicase MOT1, MOT1; re 94.9 0.45 1.5E-05 57.7 16.8 255 1284-1604 175-432 (800)
102 2of3_A ZYG-9; multifunctional 93.9 1.5 5.2E-05 49.5 17.8 100 617-729 133-235 (266)
103 3oc3_A Helicase MOT1, MOT1; re 93.6 0.2 6.7E-06 60.7 9.9 236 618-899 176-424 (800)
104 4ffb_C Protein STU2; tubulin f 93.5 0.6 2E-05 54.0 14.3 184 1415-1608 14-212 (278)
105 4ffb_C Protein STU2; tubulin f 93.2 0.46 1.6E-05 55.0 12.6 192 659-866 11-212 (278)
106 2of3_A ZYG-9; multifunctional 93.2 1.7 5.9E-05 49.1 16.6 176 416-646 51-237 (266)
107 3a6p_A Exportin-5; exportin-5, 92.9 45 0.0015 46.8 42.3 225 16-270 7-278 (1204)
108 3gjx_A Exportin-1; transport, 91.7 53 0.0018 45.0 47.0 219 19-269 27-276 (1073)
109 1upk_A MO25 protein; transfera 90.8 4.5 0.00015 46.7 16.3 201 613-818 75-284 (341)
110 3l9t_A Putative uncharacterize 90.7 2.9 9.8E-05 45.8 14.0 140 1286-1448 74-216 (240)
111 3ebb_A Phospholipase A2-activa 89.2 17 0.00059 41.9 20.0 157 1222-1380 123-286 (304)
112 3l9t_A Putative uncharacterize 88.2 5 0.00017 43.9 13.5 140 498-653 74-215 (240)
113 3gjx_A Exportin-1; transport, 88.2 94 0.0032 42.6 38.3 226 66-319 29-275 (1073)
114 2fv2_A RCD1 required for cell 86.2 45 0.0015 36.8 20.9 154 470-655 73-233 (268)
115 3u0r_A Apoptosis inhibitor 5; 85.5 47 0.0016 40.2 20.8 121 505-642 38-160 (507)
116 3ebb_A Phospholipase A2-activa 85.0 8.5 0.00029 44.5 14.2 152 389-541 121-280 (304)
117 2fv2_A RCD1 required for cell 85.0 21 0.00071 39.4 16.1 142 1303-1448 76-232 (268)
118 3c2g_A SYS-1 protein; beta-cat 84.9 14 0.00046 42.0 14.7 112 180-293 268-379 (619)
119 1lsh_A Lipovitellin (LV-1N, LV 83.6 9.4 0.00032 52.7 16.3 166 1411-1606 357-541 (1056)
120 1lsh_A Lipovitellin (LV-1N, LV 83.4 11 0.00037 52.1 16.8 169 66-270 392-578 (1056)
121 1upk_A MO25 protein; transfera 81.0 55 0.0019 37.8 18.3 199 1280-1484 75-286 (341)
122 3u0r_A Apoptosis inhibitor 5; 80.2 9.2 0.00031 46.2 12.0 123 1379-1522 38-161 (507)
123 3eg5_B Protein diaphanous homo 76.5 30 0.001 41.5 15.5 158 489-674 104-281 (383)
124 2f31_A Diaphanous protein homo 76.4 19 0.00064 40.0 12.8 142 508-676 67-217 (233)
125 3gs3_A Symplekin, LD45768P; he 75.8 34 0.0012 38.3 14.6 166 12-224 7-172 (257)
126 3a6p_A Exportin-5; exportin-5, 74.0 1.1E+02 0.0039 42.7 22.8 298 370-688 13-381 (1204)
127 3o2t_A Symplekin; heat repeat, 73.8 53 0.0018 39.0 16.2 162 16-224 21-182 (386)
128 3c2g_A SYS-1 protein; beta-cat 71.5 27 0.00091 39.7 11.8 133 388-522 261-401 (619)
129 2bnx_A Diaphanous protein homo 65.7 71 0.0024 38.3 15.3 144 508-677 71-222 (386)
130 3eg5_B Protein diaphanous homo 60.0 1.2E+02 0.0042 36.1 15.9 138 410-548 108-275 (383)
131 2f31_A Diaphanous protein homo 58.0 1.3E+02 0.0043 33.2 14.6 127 591-720 74-218 (233)
132 3o2t_A Symplekin; heat repeat, 56.8 1.3E+02 0.0043 35.9 14.9 121 1409-1566 62-182 (386)
133 3g2s_A C-terminal fragment of 53.0 44 0.0015 34.0 8.8 75 1536-1610 46-128 (149)
134 3s4w_B Protein FACD2, fanconi 47.7 4.3E+02 0.015 36.6 19.5 212 542-760 312-538 (1323)
135 2bnx_A Diaphanous protein homo 44.4 2.8E+02 0.0097 32.9 15.7 121 600-720 84-222 (386)
136 3gs3_A Symplekin, LD45768P; he 42.3 4E+02 0.014 29.6 18.6 141 1384-1566 30-172 (257)
137 1x5b_A Signal transducing adap 40.1 1.4E+02 0.0048 30.8 10.4 108 152-267 15-124 (163)
138 1mhq_A ADP-ribosylation factor 38.0 1.4E+02 0.0049 30.2 9.9 106 22-135 2-116 (148)
139 3zyq_A Hepatocyte growth facto 37.9 1E+02 0.0035 33.7 9.5 108 153-268 9-118 (226)
140 1juq_A ADP-ribosylation factor 37.3 1.5E+02 0.0052 30.8 10.2 107 21-135 13-128 (171)
141 3ldz_A STAM-1, signal transduc 34.1 86 0.0029 31.4 7.5 73 1536-1608 40-114 (140)
142 1x5b_A Signal transducing adap 32.1 1.6E+02 0.0056 30.3 9.3 106 22-135 16-125 (163)
143 3g2s_A C-terminal fragment of 32.1 3.5E+02 0.012 27.3 11.6 108 153-268 12-126 (149)
144 3qml_C Protein SLS1, nucleotid 31.8 4.2E+02 0.015 30.1 13.1 144 1375-1523 28-188 (315)
145 1mhq_A ADP-ribosylation factor 31.5 43 0.0015 34.0 4.8 74 1537-1610 37-118 (148)
146 1elk_A Target of MYB1; superhe 30.3 2.2E+02 0.0077 29.0 10.0 108 20-135 15-130 (157)
147 3ldz_A STAM-1, signal transduc 29.2 1.7E+02 0.0057 29.3 8.6 105 23-135 7-114 (140)
148 3zyq_A Hepatocyte growth facto 27.9 1.2E+02 0.004 33.3 7.8 93 1536-1629 43-138 (226)
149 1juq_A ADP-ribosylation factor 24.6 3.1E+02 0.011 28.4 10.0 72 197-268 51-128 (171)
150 1dvp_A HRS, hepatocyte growth 23.6 2.7E+02 0.0093 30.1 9.8 71 197-267 43-114 (220)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.7e-49 Score=513.54 Aligned_cols=711 Identities=15% Similarity=0.141 Sum_probs=560.7
Q ss_pred hhhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhc-CCHHHHHHHHHHHHHhhc
Q 000184 16 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS-GSLAVKIQAATVLGSLCK 94 (1890)
Q Consensus 16 ~~~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~-~~~~~~~~aa~~L~~L~~ 94 (1890)
.+|.++|.+|++.+++.+.+.+.|++|+++|..|+++..+++.++. .|+++.|.++|++ .++++...|.++|..+|+
T Consensus 2 ~~~~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~--~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 79 (810)
T 3now_A 2 AKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYK--DHCIAKVASLTKVEKDQDIYVNMVHLVAALCE 79 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHh--CchHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 3688999999999999888889999999999999999989999664 6899999999998 779999999999999999
Q ss_pred cchhhH-HHHhcCChHHHHHhhcCCCHHHHHHHHHHHH----HHhcCCCCCccccc-hhhhcC------ChHHHHHHHhc
Q 000184 95 ENELRV-KVLLGGCIPPLLGLLKSSSAEGQIAAAKTIY----AVSQGGAKDYVGSK-IFSTEG------VVPVLWEQLKN 162 (1890)
Q Consensus 95 ~~~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~----~ls~~~~~~~~~~~-~~~~~g------~ip~L~~ll~~ 162 (1890)
++..|. .++..-++|.++++|.+++.+...+++..+. .++.++.+.+.+.. .++... ++..|++++..
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (810)
T 3now_A 80 NSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD 159 (810)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc
Confidence 997776 4566678999999999999888877766544 46665554443332 233322 35567888888
Q ss_pred cCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCC-----------CHHHHHHHHHHHHHHhhcCchhh
Q 000184 163 GLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG-----------QSSTQAHVCFLLACMMEEDVSVC 231 (1890)
Q Consensus 163 ~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~-----------~~~v~~~a~~~L~~L~~~~~~~~ 231 (1890)
...+............+|+-..+-......+..||+..|+..-..- .+++|.++.-+|.++........
T Consensus 160 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~ 239 (810)
T 3now_A 160 RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDE 239 (810)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHH
T ss_pred cccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccch
Confidence 7777665665555566776543211111144568999999987751 56899999999999875433111
Q ss_pred -hHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHH-hcCChHHHHHhhcCCCccccchhhhHHHHHH
Q 000184 232 -SRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIA-GSNGIPAMINATIAPSKEFMQGEYAQALQEN 309 (1890)
Q Consensus 232 -~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~ 309 (1890)
.+.+. ..+..+++-.-...+.+-+..|++++.++..+.++....++ ..|+++.++.++.+++ ..++++
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~---------~~~q~~ 309 (810)
T 3now_A 240 AKARFT-DQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDD---------ELQQRV 309 (810)
T ss_dssp HHHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSC---------HHHHHH
T ss_pred hHHHHH-HHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCC---------HHHHHH
Confidence 11111 22333333322334677889999999999999998877776 7899999999998864 789999
Q ss_pred HHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHH
Q 000184 310 AMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQER 389 (1890)
Q Consensus 310 a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~ 389 (1890)
|++++.+++.+ +..... +. ..++ +.|..++++++ ..+|.+
T Consensus 310 A~~al~~aa~~-~~~R~~-------------I~------------------------~~gv-~~L~~Ll~s~~-~~vr~~ 349 (810)
T 3now_A 310 ACECLIAASSK-KDKAKA-------------LC------------------------EQGV-DILKRLYHSKN-DGIRVR 349 (810)
T ss_dssp HHHHHHHHTTS-HHHHHT-------------TH------------------------HHHH-HHHHHHTTCSC-HHHHHH
T ss_pred HHHHHHHHcCC-cHHHHH-------------HH------------------------HcCc-HHHHHHHcCCC-HHHHHH
Confidence 99999998764 221111 11 1234 67888887655 446999
Q ss_pred HHHHHHHhhCCC--ccchhhhhcCc----HHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHh
Q 000184 390 TIEALASLYGNP--LLSIKLENSEA----KRLLVGLITMA--TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 461 (1890)
Q Consensus 390 a~~aL~~L~~~~--~~~~~l~~~g~----i~~Lv~lL~~~--~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 461 (1890)
|+.+|++++.+. +......+.|. ++.++.+|.++ +++++++|+++|.+|+.........+.+.|++|.|+++
T Consensus 350 Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~L 429 (810)
T 3now_A 350 ALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDL 429 (810)
T ss_dssp HHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHH
Confidence 999999996432 23323333344 56677888877 88999999999999998854444445567999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcccCCh-----------------------------hcH---HHHHhcCCcHHHHHhccCCCH
Q 000184 462 LGLSSEQQQECSVALLCLLSNEND-----------------------------DSK---WAITAAGGIPPLVQILESGSA 509 (1890)
Q Consensus 462 L~~~~~~v~~~A~~aL~nL~~~~~-----------------------------~~~---~~i~~~g~i~~Lv~lL~~~~~ 509 (1890)
|++++..+++.|+++|.||+.+.+ ..+ +.++++|++|+|+++|.++++
T Consensus 430 L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~ 509 (810)
T 3now_A 430 ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESH 509 (810)
T ss_dssp HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCH
T ss_pred hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCH
Confidence 999999999999999999997542 122 788999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHH
Q 000184 510 KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKV 589 (1890)
Q Consensus 510 ~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~ 589 (1890)
.+|+.|+|+|+||+. ++++|..+.++|++|+|+.+++++++..++.|+++|.||+.+.++..+
T Consensus 510 ~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~---------------- 572 (810)
T 3now_A 510 NSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS---------------- 572 (810)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH----------------
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh----------------
Confidence 999999999999997 578999999999999999999999999999999999999875543100
Q ss_pred HHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhc
Q 000184 590 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST-KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 668 (1890)
Q Consensus 590 ~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~-~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~ 668 (1890)
+ ......+++|+|+++|.++ +...+..|+++|.||+..+++.+..+++.|++|+|+.++.
T Consensus 573 ------------------~-~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~ 633 (810)
T 3now_A 573 ------------------F-SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM 633 (810)
T ss_dssp ------------------T-TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred ------------------h-cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 0 0001134799999999876 5566789999999999998888889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHccCchhhHHHHHh-CCChHHHHHHhCCCCHHHHHHHHHHHHHHhc-CchHHHHHHh-cCcHH
Q 000184 669 VGSECILVEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPVLEVAEQATCALANLIL-DSEVSEKAIA-EEIIL 745 (1890)
Q Consensus 669 ~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~-~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~-~~~~~~~~~~-~~~v~ 745 (1890)
++++.+++.|+++|+||+.+. +..+. +.+ .|+++.|+.++.+++.++|+.|+|||+||+. ++.....++. .++++
T Consensus 634 s~~~~Vq~~A~~~L~NLa~~~-~~~~~-~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~ 711 (810)
T 3now_A 634 EDHLYLTRAAAQCLCNLVMSE-DVIKM-FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLD 711 (810)
T ss_dssp SCCTTHHHHHHHHHHHHTTSH-HHHHH-HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCh-HHHHH-HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHH
Confidence 999999999999999998764 34444 454 7999999999999999999999999999997 6777788887 89999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhcc---CcccchHHHHHHHHHHHhcCC
Q 000184 746 PATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESA---SGSVATSEALDALAILSRSGG 820 (1890)
Q Consensus 746 ~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~---~~~v~~~~al~~L~~l~~~~~ 820 (1890)
+|++++++++.++++.|+|+|.|+..+. .....++.+.|++++|++++..+ +.++. +.|+++|.++++.+.
T Consensus 712 ~Lv~LL~s~d~~vq~~A~~aL~NL~~~s---~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~-e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 712 ILHTLIANPSPAVQHRGIVIILNMINAG---EEIAKKLFETDIMELLSGLGQLPDDTRAKAR-EVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHhCcccCcHHHH-HHHHHHHHHHHhCCC
Confidence 9999999999999999999999998743 23456677889999999999876 36677 999999999987664
No 2
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=5.7e-38 Score=410.05 Aligned_cols=663 Identities=14% Similarity=0.097 Sum_probs=491.5
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHH----hhccch-
Q 000184 23 AQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS----LCKENE- 97 (1890)
Q Consensus 23 ~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~----L~~~~~- 97 (1890)
..+...+.. .++++-.-.|++.|..+|+.....-..+. +.=++|.+..++.+.++++-..+...+.. |+..++
T Consensus 52 ~~~~~l~~~-~~~~~~~~~~~r~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (810)
T 3now_A 52 AKVASLTKV-EKDQDIYVNMVHLVAALCENSVERTKGVL-TELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNK 129 (810)
T ss_dssp HHHHHHHHH-CCCHHHHHHHHHHHHHHHTTCHHHHHHHH-HHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHhc-cCchhHHHHHHHHHHHHHhccHHHHHHHH-HHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccc
Confidence 334444443 35566778999999999998743333333 34788999999999887654444443333 331111
Q ss_pred ---hhH-HHHh------cCChHHHHHhhcCC--CHHHHHHHHHHHH-HHhcCCCCCccccchhhhcCChHHHHHHHhccC
Q 000184 98 ---LRV-KVLL------GGCIPPLLGLLKSS--SAEGQIAAAKTIY-AVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL 164 (1890)
Q Consensus 98 ---~~~-~i~~------~g~i~~Lv~lL~~~--~~~~~~~a~~aL~-~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~ 164 (1890)
.+. .++. ...+..|+.++.+. +...|.++...|. |+-. ++.....-++..+++..|++......
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~l~v~~~~~ 206 (810)
T 3now_A 130 PDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHY---TALEWAERLVEIRGLCRLLDVCSELE 206 (810)
T ss_dssp TTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTC---TTTTHHHHHHHTTHHHHHHHHHTCCS
T ss_pred cccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCc---cccccccchhhHhhHHHHHHHHhcCc
Confidence 111 1221 13456777777654 4566777766554 3433 12211222677777777777765422
Q ss_pred CC--------CchHHHHHHHHHHHhccCC--hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHh
Q 000184 165 KS--------GNVVDNLLTGALRNLSTST--EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRV 234 (1890)
Q Consensus 165 ~~--------~~~v~~~~~~~L~~L~~~~--~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i 234 (1890)
.- .+..+.++.-+|..+-.+- |..+ .....-.-+.+...+..++.+-...|++++.++.....+....+
T Consensus 207 ~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~ 285 (810)
T 3now_A 207 DYKYESAMDITGSSSTIASVCLARIYENMYYDEAK-ARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQV 285 (810)
T ss_dssp SSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHH-HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHH
T ss_pred cccccccCCCChhHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHH
Confidence 21 2346767766666554221 1111 12221222344445667888888999999999998888777766
Q ss_pred h-ccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHH
Q 000184 235 L-AADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCA 313 (1890)
Q Consensus 235 ~-~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~a 313 (1890)
+ ..|+++.|+.++.++ +..++..|++++.+.+. +++.|..+.+.|+ +.|+.++.+.+ ..++.+|+.+
T Consensus 286 ~~~~G~v~~li~Ll~s~-~~~~q~~A~~al~~aa~-~~~~R~~I~~~gv-~~L~~Ll~s~~---------~~vr~~Al~~ 353 (810)
T 3now_A 286 VAREGILQMILAMATTD-DELQQRVACECLIAASS-KKDKAKALCEQGV-DILKRLYHSKN---------DGIRVRALVG 353 (810)
T ss_dssp HHTTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHTT-SHHHHHTTHHHHH-HHHHHHTTCSC---------HHHHHHHHHH
T ss_pred HhccchHHHHHHHhCCC-CHHHHHHHHHHHHHHcC-CcHHHHHHHHcCc-HHHHHHHcCCC---------HHHHHHHHHH
Confidence 6 789999999999996 67899999999999887 5889999999875 99999997643 6789999999
Q ss_pred HHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCC-ChHHHHHHHH
Q 000184 314 LANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL-PFLVQERTIE 392 (1890)
Q Consensus 314 L~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~-~~~~~~~a~~ 392 (1890)
|+++..... + ..+.+..+ .|++. .+.+.|++++.+.. +..+++.|++
T Consensus 354 L~kl~s~~~-----------~-d~~~~~~~-~g~i~-------------------~Lv~~l~~lL~~~~~d~~v~~~Ave 401 (810)
T 3now_A 354 LCKLGSYGG-----------Q-DAAIRPFG-DGAAL-------------------KLAEACRRFLIKPGKDKDIRRWAAD 401 (810)
T ss_dssp HHHHHTTTT-----------T-TTSCCSST-TTHHH-------------------HHHHHHHHHHHCSSCCSSHHHHHHH
T ss_pred HHHhccccc-----------c-Cccccchh-hccHH-------------------HHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 999864110 0 00001111 12222 34566788887661 3336999999
Q ss_pred HHHHhhCCCccchhhh-hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch---------------------------
Q 000184 393 ALASLYGNPLLSIKLE-NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS--------------------------- 444 (1890)
Q Consensus 393 aL~~L~~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~--------------------------- 444 (1890)
+|.+|+..++.+..+. +.|++|.|+++++++++.++..++++|.|++.+.+.
T Consensus 402 aLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~ 481 (810)
T 3now_A 402 GLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDV 481 (810)
T ss_dssp HHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHH
T ss_pred HHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccH
Confidence 9999999999998887 479999999999999999999999999999985421
Q ss_pred --h---hHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHH
Q 000184 445 --L---WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASIL 519 (1890)
Q Consensus 445 --~---~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL 519 (1890)
. .+.++++|++|.|+.+++++++.+|+.|+|+|+||+ .+++++..++++|++|+|+.+|.++++..|+.|+|+|
T Consensus 482 ~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL 560 (810)
T 3now_A 482 DFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQAL 560 (810)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 267889999999999999999999999999999999 4788999999999999999999999999999999999
Q ss_pred HHHhcC-ChHHHH-HHHhCCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHH
Q 000184 520 RNLCNH-SEDIRA-CVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALK 596 (1890)
Q Consensus 520 ~~L~~~-~~~~r~-~i~~~g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~ 596 (1890)
.||+.. +++... .....|++|+|+++|.++ +...+..|+++|.||+.+++.
T Consensus 561 ~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~-------------------------- 614 (810)
T 3now_A 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES-------------------------- 614 (810)
T ss_dssp HHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH--------------------------
T ss_pred HHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH--------------------------
Confidence 999963 232210 001246999999999865 334567899999999875421
Q ss_pred HHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHH-cCchHHHHHhhcCCCHHHH
Q 000184 597 SMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIA-VKTLWSVMKLLDVGSECIL 675 (1890)
Q Consensus 597 ~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~-~g~i~~Lv~lL~~~~~~v~ 675 (1890)
.+..+.+.||+|.|+.+|.++++.+|+.|+++|+||+.+ ++.+..+.. .|.+++|+.++.+++..++
T Consensus 615 -----------~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq 682 (810)
T 3now_A 615 -----------VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETA 682 (810)
T ss_dssp -----------HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHH
T ss_pred -----------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHH
Confidence 123455678999999999999999999999999999996 455555664 6899999999999999999
Q ss_pred HHHHHHHHHHHccCchhhHHHHHh-CCChHHHHHHhCCCCHHHHHHHHHHHHHHhc-CchHHHHHHhcCcHHHHHHHHhc
Q 000184 676 VEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPVLEVAEQATCALANLIL-DSEVSEKAIAEEIILPATRVLCE 753 (1890)
Q Consensus 676 ~~a~~aL~~L~~~~~~~~~~~~~~-~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~-~~~~~~~~~~~~~v~~L~~ll~~ 753 (1890)
+.|+++|.+|+.+.+...+. +++ .|++++|+.++.+++.++|+.|+|+|+|++. +++....+++.+++++|.++++.
T Consensus 683 ~~Aa~ALanLt~~s~~~~~~-ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~ 761 (810)
T 3now_A 683 TACAGALAIITSVSVKCCEK-ILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQL 761 (810)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCCHHHHHH-HHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 99999999998865433344 667 8999999999999999999999999999984 56677888899999999999987
Q ss_pred C---CcchHHHHHHHHHHHhhcCcc
Q 000184 754 G---TISGKTLAAAAIARLLHSRKI 775 (1890)
Q Consensus 754 ~---~~~~~~~aa~aL~~L~~~~~~ 775 (1890)
+ ++++.+.|..+|.+++..+-.
T Consensus 762 ~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 762 PDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred cccCcHHHHHHHHHHHHHHHhCCCc
Confidence 6 456899999999999864433
No 3
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.2e-37 Score=408.79 Aligned_cols=505 Identities=21% Similarity=0.190 Sum_probs=427.8
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCc
Q 000184 64 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLG-GCIPPLLGLLKSS-SAEGQIAAAKTIYAVSQGGAKDY 141 (1890)
Q Consensus 64 ~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~~~~~a~~aL~~ls~~~~~~~ 141 (1890)
.|++|.|+.+|+++++.++..|+.+|.+++.+++.+..+... |++++|+++|.++ +.+.+..|+.+|++++. +.
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~----~~ 91 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----HR 91 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT----SH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc----Cc
Confidence 599999999999999999999999999999888887777764 8999999999755 89999999999999988 33
Q ss_pred cccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 000184 142 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 221 (1890)
Q Consensus 142 ~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 221 (1890)
.++..+++.|++|.|+++++. .++.++..++++|++++...+..+..+++.|++|.|+++|++++.+++..++.+|.
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~ 168 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGS---PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 366778899999999999976 35778999999999999887778888889999999999999999999999999999
Q ss_pred HHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchh
Q 000184 222 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 301 (1890)
Q Consensus 222 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 301 (1890)
+++..+++.+..+.+.|+++.|+++++++.+...+..++.+|++|+. +++++..+.+.|+++.|+.++.+++
T Consensus 169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~------- 240 (529)
T 1jdh_A 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS------- 240 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSC-------
T ss_pred HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCC-------
Confidence 99988888889999999999999999988777788889999999998 6788999999999999999997653
Q ss_pred hhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCC
Q 000184 302 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 381 (1890)
Q Consensus 302 ~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~ 381 (1890)
..++++++++|.|++.+.+.
T Consensus 241 --~~~~~~a~~~L~~l~~~~~~---------------------------------------------------------- 260 (529)
T 1jdh_A 241 --QRLVQNCLWTLRNLSDAATK---------------------------------------------------------- 260 (529)
T ss_dssp --HHHHHHHHHHHHHHHTTCTT----------------------------------------------------------
T ss_pred --hHHHHHHHHHHHHHhcCChh----------------------------------------------------------
Confidence 67888999999988752100
Q ss_pred CChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHh
Q 000184 382 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 461 (1890)
Q Consensus 382 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 461 (1890)
. ....++++.|+.++++++++++..++++|.+++..++..+..+.+.|+++.|+++
T Consensus 261 ----------------------~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~l 316 (529)
T 1jdh_A 261 ----------------------Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316 (529)
T ss_dssp ----------------------C--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHH
T ss_pred ----------------------h--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH
Confidence 0 0012678889999999999999999999999999877788999999999999999
Q ss_pred hCC--CCHHHHHHHHHHHHHcccCChh---cHHHHHhcCCcHHHHHhccCCC-HHHHHHHHHHHHHHhcCChHHHHHHHh
Q 000184 462 LGL--SSEQQQECSVALLCLLSNENDD---SKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVES 535 (1890)
Q Consensus 462 L~~--~~~~v~~~A~~aL~nL~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~-~~~~e~a~~aL~~L~~~~~~~r~~i~~ 535 (1890)
+.+ .+++++..|+++|+||+.++++ .+..+.+.|+++.|+++|.+++ +.+++.++|+|+|++.. ++++..+.+
T Consensus 317 l~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~ 395 (529)
T 1jdh_A 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLRE 395 (529)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHH
Confidence 975 3479999999999999975444 4778999999999999999886 69999999999999984 677888999
Q ss_pred CCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhc
Q 000184 536 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN 615 (1890)
Q Consensus 536 ~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~ 615 (1890)
.|++|+|+++++++++.++..|+|++.|.+.....
T Consensus 396 ~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~--------------------------------------------- 430 (529)
T 1jdh_A 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--------------------------------------------- 430 (529)
T ss_dssp TTHHHHHHHHHHHHHHHHC-----------CBTTB---------------------------------------------
T ss_pred cCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc---------------------------------------------
Confidence 99999999999998889999999999884321100
Q ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHH
Q 000184 616 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREV 695 (1890)
Q Consensus 616 ~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 695 (1890)
..++++..++.+|++|+.. ++.+..+.+.|++++|+.++.++++.++..++.+|.+++.. + ..+.
T Consensus 431 ------------~~~~i~~~~~~al~~L~~~-~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~-~-~~~~ 495 (529)
T 1jdh_A 431 ------------RMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K-EAAE 495 (529)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-H-HHHH
T ss_pred ------------cHHHHHHHHHHHHHHHhcC-chHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC-H-HHHH
Confidence 0123446778899999985 56777899999999999999999999999999999999754 2 4555
Q ss_pred HHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000184 696 AAVARDALSPLVVLAGSPVLEVAEQATCALANL 728 (1890)
Q Consensus 696 ~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL 728 (1890)
.+.+.|+++.|..+++++++++++.|.++|.+|
T Consensus 496 ~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 588999999999999999999999999999987
No 4
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=414.55 Aligned_cols=528 Identities=20% Similarity=0.190 Sum_probs=444.2
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCc
Q 000184 64 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLG-GCIPPLLGLLKSS-SAEGQIAAAKTIYAVSQGGAKDY 141 (1890)
Q Consensus 64 ~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~~~~~a~~aL~~ls~~~~~~~ 141 (1890)
.|++|.|+.+|+++++.++..|+.+|++++.++..+..+... |+++.|+++|.++ +.+.+..|+.+|.+++. +.
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~----~~ 88 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH----HR 88 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT----SH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc----Ch
Confidence 699999999999999999999999999999888777777654 8899999999875 89999999999999998 33
Q ss_pred cccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 000184 142 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 221 (1890)
Q Consensus 142 ~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 221 (1890)
.++..+.+.|++|.|++++++. ++.++..++++|.+++...+..+..+++.|+++.|+++|+++++.++..++.+|.
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHH
Confidence 3667788999999999999763 5678999999999999887778888889999999999999999999999999999
Q ss_pred HHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchh
Q 000184 222 CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 301 (1890)
Q Consensus 222 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 301 (1890)
+++..+++.+..+.+.|+++.|++++++..+...+..++.+|++|+. +++++..+++.|+++.|+.++..++
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~------- 237 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS------- 237 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSC-------
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCC-------
Confidence 99987777889999999999999999988777889999999999997 7889999999999999999997653
Q ss_pred hhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCC
Q 000184 302 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 381 (1890)
Q Consensus 302 ~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~ 381 (1890)
..++++++++|.|++...+.
T Consensus 238 --~~~~~~a~~~L~nL~~~~~~---------------------------------------------------------- 257 (644)
T 2z6h_A 238 --QRLVQNCLWTLRNLSDAATK---------------------------------------------------------- 257 (644)
T ss_dssp --HHHHHHHHHHHHHHGGGCTT----------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHhhcchh----------------------------------------------------------
Confidence 67889999999998742100
Q ss_pred CChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHh
Q 000184 382 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 461 (1890)
Q Consensus 382 ~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l 461 (1890)
.....++++.|+.++++.++++++.++++|.+|+..++.++..+.+.|+++.|+++
T Consensus 258 ------------------------~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~l 313 (644)
T 2z6h_A 258 ------------------------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 313 (644)
T ss_dssp ------------------------CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred ------------------------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 00012678889999999999999999999999999877888899999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHcccCChh---cHHHHHhcCCcHHHHHhccCCC-HHHHHHHHHHHHHHhcCChHHHHHHHh
Q 000184 462 LGLS--SEQQQECSVALLCLLSNENDD---SKWAITAAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVES 535 (1890)
Q Consensus 462 L~~~--~~~v~~~A~~aL~nL~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~-~~~~e~a~~aL~~L~~~~~~~r~~i~~ 535 (1890)
+.+. .++++..|+++|+||+..+++ .+..+.+.|+++.|+++|.+++ +.+++.|+|+|+||+.. ++++..+.+
T Consensus 314 L~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~ 392 (644)
T 2z6h_A 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLRE 392 (644)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHH
T ss_pred HHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHH
Confidence 9863 379999999999999964442 4566889999999999999885 79999999999999985 677888999
Q ss_pred CCCHHHHHHHhhcCChhHHHHHHHHHHH--HhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhh
Q 000184 536 ADAVPALLWLLKNGSANGKEIAAKTLNH--LIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSA 613 (1890)
Q Consensus 536 ~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~--L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 613 (1890)
.|+++.|++++.++++.+++.|+|++.| +..
T Consensus 393 ~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~----------------------------------------------- 425 (644)
T 2z6h_A 393 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE----------------------------------------------- 425 (644)
T ss_dssp TTHHHHHHHHHHHHHHHHTTC----------CC-----------------------------------------------
T ss_pred cCCHHHHHHHHhccchhhhhHhhhccccchhcc-----------------------------------------------
Confidence 9999999999999888888888887765 110
Q ss_pred hcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhh
Q 000184 614 ANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 693 (1890)
Q Consensus 614 ~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 693 (1890)
+ ..+++++..++.+|++|+.+ +..+..+...|++|+|+.++.++++.++..++.+|.+++.. + ..
T Consensus 426 --~----------~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~-~~ 490 (644)
T 2z6h_A 426 --G----------VRMEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K-EA 490 (644)
T ss_dssp --S----------SCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-H-HH
T ss_pred --c----------ccHHHHHHHHHHHHHHHhcC-HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-H-HH
Confidence 0 02345678899999999986 47778888999999999999999999999999999999754 3 45
Q ss_pred HHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchH-HHHHHhcCcHHHHHHHHhcCCc
Q 000184 694 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEV-SEKAIAEEIILPATRVLCEGTI 756 (1890)
Q Consensus 694 ~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~-~~~~~~~~~v~~L~~ll~~~~~ 756 (1890)
+..+.+.|+++.|+.+++++++++++.|+++|.+|..+.+. ....+ .++.+..+++.+..
T Consensus 491 ~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~---~~~il~~~~~~~~~ 551 (644)
T 2z6h_A 491 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL---SVELTSSLFRTEPM 551 (644)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHH---HHHHHHHHSCCSCG
T ss_pred HHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhccc---chHHHHHHHhCCCc
Confidence 55588999999999999999999999999999999866532 11111 35666666665543
No 5
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.1e-37 Score=419.48 Aligned_cols=561 Identities=20% Similarity=0.187 Sum_probs=448.7
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhH
Q 000184 21 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRV 100 (1890)
Q Consensus 21 ~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~ 100 (1890)
.+..+++.|.+. +...+..++..+ .... +..+. .|++|.|+.+|+++++.+|..|+.+|++++.++..+.
T Consensus 116 ~i~~lv~~L~~~--~~~~r~~a~~~l-~~~~-----~~~i~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 116 AHPTNVQRLAEP--SQMLKHAVVNLI-NYQD-----DAELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp ----------CC--SCHHHHHHHHHH-HHHH-----HHHHH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cHHHHHHHhcCc--cHHHHHHHHHHH-Hhhh-----HHHHH--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 467788888765 333444444443 3221 22343 5999999999999999999999999999998877777
Q ss_pred HHHhc-CChHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHH
Q 000184 101 KVLLG-GCIPPLLGLLKSS-SAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGAL 178 (1890)
Q Consensus 101 ~i~~~-g~i~~Lv~lL~~~-~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L 178 (1890)
.+... |+++.|+++|+++ +.+.+..|+.+|.+++. +..++..+.+.|++|.|+++++.. ++.++..++++|
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~----~~~~~~~i~~~g~I~~Lv~lL~~~---~~~v~~~A~~aL 258 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH----HREGLLAIFKSGGIPALVNMLGSP---VDSVLFHAITTL 258 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT----SHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC----CchhHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHH
Confidence 77754 8999999999865 89999999999999998 233456688899999999999864 467899999999
Q ss_pred HHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHH
Q 000184 179 RNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAE 258 (1890)
Q Consensus 179 ~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 258 (1890)
.|+|...+..+..+++.|+++.|+.+|++++.+++..++.+|.+++..+++.+..+++.|+++.|+++++++.+...+..
T Consensus 259 ~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~ 338 (780)
T 2z6g_A 259 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 338 (780)
T ss_dssp HHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 99998877888888899999999999999999999999999999998878788999999999999999998877777889
Q ss_pred HHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCCh
Q 000184 259 AAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSP 338 (1890)
Q Consensus 259 Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~ 338 (1890)
++.+|++|+. +++++..+++.|+++.|+.++.+++ ..++++++++|.|++.....
T Consensus 339 a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~---------~~~~~~a~~~L~~L~~~~~~--------------- 393 (780)
T 2z6g_A 339 TSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPS---------QRLVQNCLWTLRNLSDAATK--------------- 393 (780)
T ss_dssp HHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSC---------HHHHHHHHHHHHHHHTTCTT---------------
T ss_pred HHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCc---------hHHHHHHHHHHHHHhccchh---------------
Confidence 9999999997 6788999999999999999997653 66888888888887752100
Q ss_pred hhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHH
Q 000184 339 AQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVG 418 (1890)
Q Consensus 339 ~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~ 418 (1890)
.....++++.|+.
T Consensus 394 -------------------------------------------------------------------~~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 394 -------------------------------------------------------------------QEGMEGLLGTLVQ 406 (780)
T ss_dssp -------------------------------------------------------------------CSCCHHHHHHHHH
T ss_pred -------------------------------------------------------------------hhhhhhHHHHHHH
Confidence 0011357888999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCC--CHHHHHHHHHHHHHcccCChh---cHHHHHh
Q 000184 419 LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDD---SKWAITA 493 (1890)
Q Consensus 419 lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~---~~~~i~~ 493 (1890)
++++.+++++..|+++|.+|+..++..+..+.+.|+++.|+++|.+. .++++..|+++|+||+..+++ .+..+.+
T Consensus 407 lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~ 486 (780)
T 2z6g_A 407 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999999998778888999999999999999863 348999999999999965444 3668889
Q ss_pred cCCcHHHHHhccCCCH-HHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHH--HhcCCCC
Q 000184 494 AGGIPPLVQILESGSA-KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNH--LIHKSDT 570 (1890)
Q Consensus 494 ~g~i~~Lv~lL~~~~~-~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~--L~~~~~~ 570 (1890)
.|+++.|+++|.+++. .+++.|+|+|+||+. .+.++..+.+.|+++.|++++.++++.+++.++|++.| +..
T Consensus 487 ~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~---- 561 (780)
T 2z6g_A 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE---- 561 (780)
T ss_dssp TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS-SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCST----
T ss_pred cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc-CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhc----
Confidence 9999999999998864 999999999999998 47788889999999999999998888888888887765 110
Q ss_pred CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhH
Q 000184 571 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 650 (1890)
Q Consensus 571 ~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~ 650 (1890)
+ ...++++..++.+|++|+.+ +..
T Consensus 562 ----------------------------------------~---------------~~~~~v~~~a~~aL~~La~~-~~~ 585 (780)
T 2z6g_A 562 ----------------------------------------G---------------VRMEEIVEACTGALHILARD-IHN 585 (780)
T ss_dssp ----------------------------------------T---------------CCHHHHHHHHHHHHHHHTTS-HHH
T ss_pred ----------------------------------------c---------------cChHHHHHHHHHHHHHHhcC-hhh
Confidence 0 01245678899999999975 667
Q ss_pred HHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000184 651 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 730 (1890)
Q Consensus 651 ~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~ 730 (1890)
+..+...|++|+|+.++.++++.++..++.+|.+++.. + ..+..+.+.|+++.|++++.++++++++.|+++|.++..
T Consensus 586 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~-~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 586 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD-K-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-H-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 77788999999999999999999999999999999754 2 455668999999999999999999999999999999997
Q ss_pred CchHHHHHHhcCcHHHHHHHHhcCC
Q 000184 731 DSEVSEKAIAEEIILPATRVLCEGT 755 (1890)
Q Consensus 731 ~~~~~~~~~~~~~v~~L~~ll~~~~ 755 (1890)
+++.... ..-.++.+..++++++
T Consensus 664 ~~~~~~~--~~l~~~ll~~l~~~~~ 686 (780)
T 2z6g_A 664 DKPQDYK--KRLSVELTSSLFRTEP 686 (780)
T ss_dssp TSCTTHH--HHHHHHHHHHC-----
T ss_pred CChHhhh--ccccHHHHHHHHhCCC
Confidence 6652211 1115555566666554
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.8e-37 Score=418.13 Aligned_cols=544 Identities=19% Similarity=0.187 Sum_probs=441.0
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccc
Q 000184 64 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 143 (1890)
Q Consensus 64 ~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~ 143 (1890)
.+++|.++..|++++++++..++..+... .+..+ ..|++|.|+.+|.+++..++..|+.+|.+++. +...
T Consensus 114 ~~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~----~~~~ 183 (780)
T 2z6g_A 114 DSAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEAS 183 (780)
T ss_dssp ------------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT----SHHH
T ss_pred cccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC----CChh
Confidence 45789999999999999988888877744 22333 37899999999999999999999999999998 2233
Q ss_pred cchhh-hcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000184 144 SKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 222 (1890)
Q Consensus 144 ~~~~~-~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~ 222 (1890)
+..++ ..|+++.|++.|+.. .++.++..++.+|++|+... .++..+.+.|+++.|+++|+++++.++..|+++|.+
T Consensus 184 ~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 184 RHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34455 458999999999864 36678889999999999765 557778899999999999999999999999999999
Q ss_pred HhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhh
Q 000184 223 MMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEY 302 (1890)
Q Consensus 223 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 302 (1890)
++...+..+..+.+.|+++.|++++.++ +.+++..++.+|++++..+++++..+.+.|+++.|+.++..++
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-------- 331 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-------- 331 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC--------
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC--------
Confidence 9988776788888999999999999985 5789999999999999888999999999999999999997653
Q ss_pred hHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCC
Q 000184 303 AQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL 382 (1890)
Q Consensus 303 ~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~ 382 (1890)
....++.++.+|.+
T Consensus 332 ~~~~~~~a~~aL~~------------------------------------------------------------------ 345 (780)
T 2z6g_A 332 YEKLLWTTSRVLKV------------------------------------------------------------------ 345 (780)
T ss_dssp CHHHHHHHHHHHHH------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHH------------------------------------------------------------------
Confidence 12334444444444
Q ss_pred ChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhh
Q 000184 383 PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 462 (1890)
Q Consensus 383 ~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 462 (1890)
|+.++.++..+.+.|+++.|+.++.+.+..++..++++|.+++...... ....++++.|+++|
T Consensus 346 --------------Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL 408 (780)
T 2z6g_A 346 --------------LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLL 408 (780)
T ss_dssp --------------HHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHT
T ss_pred --------------hhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHH
Confidence 4444455566777899999999999999999999999999999765331 12246899999999
Q ss_pred CCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC--CHHHHHHHHHHHHHHhcCChH---HHHHHHhCC
Q 000184 463 GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSED---IRACVESAD 537 (1890)
Q Consensus 463 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~e~a~~aL~~L~~~~~~---~r~~i~~~g 537 (1890)
++.+++++..|+++|++|+.+.++++..+.+.|+++.|+++|.+. .+.+++.|+++|+||+..+++ .+..+...|
T Consensus 409 ~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~ 488 (780)
T 2z6g_A 409 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY 488 (780)
T ss_dssp TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC
Confidence 999999999999999999987788899999999999999999863 358999999999999975443 467888999
Q ss_pred CHHHHHHHhhcCCh-hHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcc
Q 000184 538 AVPALLWLLKNGSA-NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAND 616 (1890)
Q Consensus 538 ~i~~Lv~ll~~~~~-~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~ 616 (1890)
+++.|++++.+++. .+++.|+++|+||+.+.+ .+..+.+.+
T Consensus 489 ~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~--------------------------------------~~~~i~~~g 530 (780)
T 2z6g_A 489 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA--------------------------------------NHAPLREQG 530 (780)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH--------------------------------------HHHHHHHTT
T ss_pred CHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH--------------------------------------HHHHHHHCC
Confidence 99999999998775 899999999999976321 122344578
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHH--HhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhH
Q 000184 617 AVETMIKILSSTKEETQAKSASALAG--IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 694 (1890)
Q Consensus 617 ~i~~Lv~lL~s~~~~~~~~A~~aL~~--L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 694 (1890)
+++.|+++|.+++.++|+.++|++.+ +.. ....++++..++.+|.+++.+ + .++
T Consensus 531 ~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~----------------------~~~~~~v~~~a~~aL~~La~~-~-~~~ 586 (780)
T 2z6g_A 531 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE----------------------GVRMEEIVEACTGALHILARD-I-HNR 586 (780)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC------CCST----------------------TCCHHHHHHHHHHHHHHHTTS-H-HHH
T ss_pred CHHHHHHHHHhcchhHHHHHhhccccchhhc----------------------ccChHHHHHHHHHHHHHHhcC-h-hhH
Confidence 89999999999989999999998776 211 112356788999999999864 2 555
Q ss_pred HHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCc
Q 000184 695 VAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 774 (1890)
Q Consensus 695 ~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~ 774 (1890)
..+.+.|++++|++++.+++++++..|+.+|++|..+++.+..+.+.++++.|.+++++.+..+++.|+|+|.++....+
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 66889999999999999999999999999999999998888888899999999999999999999999999999997655
No 7
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=6.9e-37 Score=401.48 Aligned_cols=509 Identities=19% Similarity=0.180 Sum_probs=417.8
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhh-hcCChHHHHHHHhccCCCCchHHHHHHHHHHHh
Q 000184 103 LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 181 (1890)
Q Consensus 103 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~-~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L 181 (1890)
...|++|+|+.+|++++++++..|+.+|.+++. +...++.++ ..|++|.|++.+... .++.++..++.+|++|
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~----~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNL 87 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT----SHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc----CCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 456889999999999999999999999999998 223333444 458999999999764 3567888999999999
Q ss_pred ccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHH
Q 000184 182 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAG 261 (1890)
Q Consensus 182 ~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~ 261 (1890)
+..+ .++..+.+.|+++.|+++|++++++++..++++|.+++..++..+..+.+.|+++.|++++.++ +.+++..++.
T Consensus 88 s~~~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~~~ 165 (529)
T 1jdh_A 88 SHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTD 165 (529)
T ss_dssp TTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHH
T ss_pred HcCc-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHH
Confidence 8765 5788899999999999999999999999999999999988776788888999999999999985 5789999999
Q ss_pred HHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhh
Q 000184 262 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQV 341 (1890)
Q Consensus 262 aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~ 341 (1890)
+|++++.++++++..+.+.||++.|+.++.+++ ....++.
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~--------~~~~~~~-------------------------------- 205 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYT--------YEKLLWT-------------------------------- 205 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC--------CHHHHHH--------------------------------
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC--------hHHHHHH--------------------------------
Confidence 999999988999999999999999999996543 1223333
Q ss_pred hhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc
Q 000184 342 ADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT 421 (1890)
Q Consensus 342 ~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~ 421 (1890)
+..+|.+++.+++++..+.+.|+++.|+.+++
T Consensus 206 ------------------------------------------------a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~ 237 (529)
T 1jdh_A 206 ------------------------------------------------TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237 (529)
T ss_dssp ------------------------------------------------HHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTT
T ss_pred ------------------------------------------------HHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh
Confidence 44444555555666667778899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHH
Q 000184 422 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 501 (1890)
Q Consensus 422 ~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv 501 (1890)
++++.++..++++|.+++...+... ...++++.|++++.+++++++..|+++|++|+.++++++..+.+.|+++.|+
T Consensus 238 ~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 238 DPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Confidence 9999999999999999998753321 2247899999999999999999999999999987778999999999999999
Q ss_pred HhccCC--CHHHHHHHHHHHHHHhcCChH---HHHHHHhCCCHHHHHHHhhcCC-hhHHHHHHHHHHHHhcCCCCCcHHH
Q 000184 502 QILESG--SAKAKEDSASILRNLCNHSED---IRACVESADAVPALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTATISQ 575 (1890)
Q Consensus 502 ~lL~~~--~~~~~e~a~~aL~~L~~~~~~---~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~Aa~aL~~L~~~~~~~~i~~ 575 (1890)
++|.+. ++++++.|+++|+||+..+++ .+..+.+.|++|+|++++++++ +.++..++++|+|++.+.+.
T Consensus 315 ~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~----- 389 (529)
T 1jdh_A 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN----- 389 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-----
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhh-----
Confidence 999763 479999999999999985433 5788999999999999999876 58999999999999863321
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHH
Q 000184 576 LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSI 655 (1890)
Q Consensus 576 L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~ 655 (1890)
+..+.+.+++|.|+++++++++++|+.|+|++.|.+...
T Consensus 390 ---------------------------------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~-------- 428 (529)
T 1jdh_A 390 ---------------------------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE-------- 428 (529)
T ss_dssp ---------------------------------HHHHHHTTHHHHHHHHHHHHHHHHC-----------CBT--------
T ss_pred ---------------------------------hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhc--------
Confidence 123345788999999999999999999999999843211
Q ss_pred HcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHH
Q 000184 656 AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVS 735 (1890)
Q Consensus 656 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~ 735 (1890)
| .....++..++.++.+++.. + .++..+.+.|+++.|+.++.+++++++..++++|+++..+++.+
T Consensus 429 --~----------~~~~~i~~~~~~al~~L~~~-~-~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 494 (529)
T 1jdh_A 429 --G----------VRMEEIVEGCTGALHILARD-V-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494 (529)
T ss_dssp --T----------BCHHHHHHHHHHHHHHHTTS-H-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHH
T ss_pred --c----------ccHHHHHHHHHHHHHHHhcC-c-hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHH
Confidence 1 11244567788999999764 3 45566889999999999999999999999999999999888888
Q ss_pred HHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHh
Q 000184 736 EKAIAEEIILPATRVLCEGTISGKTLAAAAIARLL 770 (1890)
Q Consensus 736 ~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~ 770 (1890)
..+.+.++++.|.+++++.++++++.|.|+|.+++
T Consensus 495 ~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 495 EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 88889999999999999999999999999999873
No 8
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=402.54 Aligned_cols=511 Identities=19% Similarity=0.186 Sum_probs=425.4
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhh-hcCChHHHHHHHhccCCCCchHHHHHHHHHHHh
Q 000184 103 LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 181 (1890)
Q Consensus 103 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~-~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L 181 (1890)
...|++|.|+.+|+++++.++..|+.+|.+++.. ...++.++ ..|+++.|++.|+.. .++.++..++.+|++|
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~----~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK----EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNL 84 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS----TTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC----ChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 5668999999999999999999999999999983 23344444 458999999999863 3567888999999999
Q ss_pred ccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHH
Q 000184 182 STSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAG 261 (1890)
Q Consensus 182 ~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~ 261 (1890)
+... .++..+.+.|+++.|+++|+++++.++..|+++|.+++...+..+..+++.|+++.|+++|+++ +.+++..++.
T Consensus 85 s~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~ 162 (644)
T 2z6h_A 85 SHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTD 162 (644)
T ss_dssp TTSH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHH
T ss_pred hcCh-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHH
Confidence 9765 4778899999999999999999999999999999999988766778888999999999999986 4678888899
Q ss_pred HHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhh
Q 000184 262 ALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQV 341 (1890)
Q Consensus 262 aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~ 341 (1890)
+|++|+.++++++..+.+.|+++.|+.++.+++ ...+++.++.+|.|
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--------~~~~~~~a~~~L~n------------------------- 209 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYT--------YEKLLWTTSRVLKV------------------------- 209 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC--------CHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC--------hHHHHHHHHHHHHH-------------------------
Confidence 999999888999999999999999999997653 13344444444444
Q ss_pred hhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhc
Q 000184 342 ADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT 421 (1890)
Q Consensus 342 ~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~ 421 (1890)
++.++.++..+.+.|+++.|+.+++
T Consensus 210 -------------------------------------------------------Ls~~~~~~~~l~~~g~l~~L~~ll~ 234 (644)
T 2z6h_A 210 -------------------------------------------------------LSVCSSNKPAIVEAGGMQALGLHLT 234 (644)
T ss_dssp -------------------------------------------------------HTTCTTHHHHHHHTTHHHHHHTTTT
T ss_pred -------------------------------------------------------HhcCcccHHHHHHCCCHHHHHHHHh
Confidence 4445556667778899999999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHH
Q 000184 422 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 501 (1890)
Q Consensus 422 ~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv 501 (1890)
+++..++..++++|.+++...+.. ....++++.|++++++.+++++..|+++|++|+.++++++..+.+.|+++.|+
T Consensus 235 ~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv 311 (644)
T 2z6h_A 235 DPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311 (644)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 999999999999999999864331 11237899999999999999999999999999987778899999999999999
Q ss_pred HhccCC--CHHHHHHHHHHHHHHhcCCh---HHHHHHHhCCCHHHHHHHhhcCC-hhHHHHHHHHHHHHhcCCCCCcHHH
Q 000184 502 QILESG--SAKAKEDSASILRNLCNHSE---DIRACVESADAVPALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTATISQ 575 (1890)
Q Consensus 502 ~lL~~~--~~~~~e~a~~aL~~L~~~~~---~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~Aa~aL~~L~~~~~~~~i~~ 575 (1890)
+++.+. .+.+++.|+++|+||+..++ ..+..+.+.|+++.|+++|++.+ +.+++.++++|+|++.+.+.
T Consensus 312 ~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~----- 386 (644)
T 2z6h_A 312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN----- 386 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-----
T ss_pred HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-----
Confidence 999864 37999999999999997543 35667888999999999999875 68999999999999764321
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH--HhhcChhHHHH
Q 000184 576 LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG--IFETRKDLRES 653 (1890)
Q Consensus 576 L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~--L~~~~~~~~~~ 653 (1890)
+..+.+.++++.|+++|.+++.++|+.|+|++.+ ++.+
T Consensus 387 ---------------------------------~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~------- 426 (644)
T 2z6h_A 387 ---------------------------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG------- 426 (644)
T ss_dssp ---------------------------------HHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCS-------
T ss_pred ---------------------------------HHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccc-------
Confidence 1234467889999999999999999999998776 2211
Q ss_pred HHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCch
Q 000184 654 SIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 733 (1890)
Q Consensus 654 ~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~ 733 (1890)
..+..++..++.+|.+++.+. .++..+.+.|++++|++++.+++++++..|+++|+++..+++
T Consensus 427 ---------------~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~ 489 (644)
T 2z6h_A 427 ---------------VRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 489 (644)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHH
T ss_pred ---------------ccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHH
Confidence 134567889999999998654 556668899999999999999999999999999999998888
Q ss_pred HHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCc
Q 000184 734 VSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 774 (1890)
Q Consensus 734 ~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~ 774 (1890)
.+..+...++++.|.+++++.+++++..|+++|.++.....
T Consensus 490 ~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 490 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 88888899999999999999999999999999999986553
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=2.9e-36 Score=390.16 Aligned_cols=416 Identities=17% Similarity=0.190 Sum_probs=360.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCchhhHHHHhcCcHHHHHHhhCC-CCHHHHHHHHHHHHHcccCChhcHH
Q 000184 412 AKRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKW 489 (1890)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~ 489 (1890)
.++.+|..++++|++.|..|+..++++.+ .+....+.+++.|+||+||++|+. +++++|.+|+|+|+||+.+++++++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 58899999999999999999999998654 334457889999999999999975 5689999999999999988999999
Q ss_pred HHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCCh-----hHHHHHHHHHHHH
Q 000184 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-----NGKEIAAKTLNHL 564 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~-----~~~~~Aa~aL~~L 564 (1890)
.+++.|+||.|+++|.++++++++.|+|+|+||+.+++++|..+.+.|++++|+.++...+. ...+.++++|+++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999999999999999987543 4678899999999
Q ss_pred hcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000184 565 IHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 644 (1890)
Q Consensus 565 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~ 644 (1890)
+.+.++.. . .....+++|.|+.++.+++++++..|+|+|++|+
T Consensus 218 ~~~~~~~~-------------~------------------------~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKNPAP-------------P------------------------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HCCCSSCC-------------C------------------------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhcccchh-------------H------------------------HHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 88654310 0 0112456999999999999999999999999999
Q ss_pred hcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHH
Q 000184 645 ETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCA 724 (1890)
Q Consensus 645 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~a 724 (1890)
.+.++....+...|++|.|+.++.+++..++..++++|++++.+.. .++..+.+.|+++.|+.+++++++++++.|+|+
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~a 339 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 339 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH-HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHH
Confidence 9888888888999999999999999999999999999999987754 556668899999999999999999999999999
Q ss_pred HHHHhcC-chHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCccc
Q 000184 725 LANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSV 803 (1890)
Q Consensus 725 L~nL~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v 803 (1890)
|+||+.+ ++....+++.+++++|+.++++++.+++..|+|+|.++....... ...++.+.|++++|+++|.+++.++
T Consensus 340 L~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~--~~~~L~~~g~i~~L~~LL~~~d~~i 417 (510)
T 3ul1_B 340 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE--QIVYLVHCGIIEPLMNLLSAKDTKI 417 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHH--HHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHH--HHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 9999965 455566668999999999999999999999999999998765433 2345567899999999999999888
Q ss_pred chHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCCc
Q 000184 804 ATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQP 869 (1890)
Q Consensus 804 ~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~ 869 (1890)
. ..++++|.|+++..+... ..+.+...++..++++.|..++.+.|+.+|++|.++|++||+++.
T Consensus 418 ~-~~~L~aL~nil~~~~~~~-~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 481 (510)
T 3ul1_B 418 I-QVILDAISNIFQAAEKLG-ETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 481 (510)
T ss_dssp H-HHHHHHHHHHHHHHHTTT-CHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred H-HHHHHHHHHHHHHhHhcc-chHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 8 999999999987654311 224556778889999999999999999999999999999998653
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.9e-35 Score=384.95 Aligned_cols=417 Identities=17% Similarity=0.181 Sum_probs=360.9
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhh-ccCchhhHHHHhcCcHHHHHHhhC-CCCHHHHHHHHHHHHHcccCChhcH
Q 000184 411 EAKRLLVGLITMATNEVQEELVRALLKLC-NNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSK 488 (1890)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~ 488 (1890)
..++.++..+.+++++.+..|+..++++. ..+......+++.|++|.|+++|+ +.++.+|..|+|+|+|++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 46788999999999999999999999864 444456778999999999999997 4568999999999999998888999
Q ss_pred HHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCCh-----hHHHHHHHHHHH
Q 000184 489 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-----NGKEIAAKTLNH 563 (1890)
Q Consensus 489 ~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~-----~~~~~Aa~aL~~ 563 (1890)
..+++.|+||.|+.+|.++++.+++.|+|+|+||+.+++++|..+.+.|++++|+.++...+. ...+.++++|++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999889999999999999999999987543 467889999999
Q ss_pred HhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000184 564 LIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGI 643 (1890)
Q Consensus 564 L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L 643 (1890)
++.+.++.. . .....+++|.|+.++.+++++++..|+|+|.++
T Consensus 236 l~~~~~~~~-------------~------------------------~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 236 LCRNKNPAP-------------P------------------------LDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHCCCTTCC-------------C------------------------HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHhcccchh-------------h------------------------HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 998654310 0 011245699999999999999999999999999
Q ss_pred hhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000184 644 FETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATC 723 (1890)
Q Consensus 644 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~ 723 (1890)
+.+.++....+...|++|.|+.++.+++..++..++++|++++.+.+ .++..+.+.|+++.|+.++.++++++++.|+|
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch-HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 99988888889999999999999999999999999999999987754 55666889999999999999999999999999
Q ss_pred HHHHHhcC-chHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcc
Q 000184 724 ALANLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGS 802 (1890)
Q Consensus 724 aL~nL~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~ 802 (1890)
+|+||+.+ ++....+++.+++++|+.++++++.+++..|+|+|.++....... ...++.+.|++++|+++|.+.+.+
T Consensus 358 aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~--~~~~l~~~g~i~~L~~LL~~~d~~ 435 (529)
T 3tpo_A 358 TMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE--QIVYLVHCGIIEPLMNLLSAKDTK 435 (529)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH--HHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred HHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH--HHHHHHHCcCHHHHHHHhcCCCHH
Confidence 99999965 445556668999999999999999999999999999998765432 234556789999999999999988
Q ss_pred cchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCCc
Q 000184 803 VATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQP 869 (1890)
Q Consensus 803 v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~ 869 (1890)
+. ..++.+|.|+++..+.. ...+.+...++..++++.|..++.+.|+.++++|.++|++||+++.
T Consensus 436 i~-~~~L~aL~nil~~~~~~-~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 500 (529)
T 3tpo_A 436 II-QVILDAISNIFQAAEKL-GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 500 (529)
T ss_dssp HH-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred HH-HHHHHHHHHHHHHhHhc-cChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 88 99999999998765431 1234566778899999999999999999999999999999997543
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.5e-32 Score=355.36 Aligned_cols=410 Identities=16% Similarity=0.190 Sum_probs=350.9
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHH
Q 000184 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEE-DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARR 275 (1890)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~ 275 (1890)
.++.+++.+.+++.+.+..|+..++++.+. ..+....+++.|++|.|+++|++.++.+++..|+|+|+||++++++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 589999999999999999999999987643 3335789999999999999998776788999999999999999999999
Q ss_pred HHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHh
Q 000184 276 EIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIY 355 (1890)
Q Consensus 276 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~ 355 (1890)
.++++|+||.|+.+|.+++ ..+++.|+++|+|++.+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~---------~~v~e~A~~aL~nLa~d----------------------------------- 173 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPH---------AHISEQAVWALGNIAGD----------------------------------- 173 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHHhC-----------------------------------
Confidence 9999999999999998765 67888888888887652
Q ss_pred cccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCC-----HHHHHH
Q 000184 356 DSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT-----NEVQEE 430 (1890)
Q Consensus 356 ~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----~~v~~~ 430 (1890)
++..+..+.+.|++++|+.++...+ ...+..
T Consensus 174 --------------------------------------------~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~ 209 (510)
T 3ul1_B 174 --------------------------------------------GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209 (510)
T ss_dssp --------------------------------------------CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHH
T ss_pred --------------------------------------------CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHH
Confidence 2233445667788999999987554 456789
Q ss_pred HHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHH
Q 000184 431 LVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAK 510 (1890)
Q Consensus 431 a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 510 (1890)
++++|.+++.+...........+++|.|++++.+++++++..|+++|++|+.+..+....+.+.|+++.|+++|.+++..
T Consensus 210 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 289 (510)
T 3ul1_B 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 289 (510)
T ss_dssp HHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChh
Confidence 99999999987654444444458899999999999999999999999999987777788899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHH
Q 000184 511 AKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVY 590 (1890)
Q Consensus 511 ~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~ 590 (1890)
++..++++|+|++..++..+..+.+.|++++|+.+++++++.+++.|+++|+|++.+...
T Consensus 290 v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-------------------- 349 (510)
T 3ul1_B 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-------------------- 349 (510)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH--------------------
T ss_pred hhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH--------------------
Confidence 999999999999998889999999999999999999999999999999999999764321
Q ss_pred HHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-ChhHHHHHHHcCchHHHHHhhcC
Q 000184 591 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDV 669 (1890)
Q Consensus 591 a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~-~~~~~~~~~~~g~i~~Lv~lL~~ 669 (1890)
....+.+.+++|.|+.++.+++.++|+.|+|+|+|++.+ ..+.+..+.+.|++++|+.+|.+
T Consensus 350 -----------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 350 -----------------QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp -----------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred -----------------HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 122345678899999999999999999999999999975 45566778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHccC-----chhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000184 670 GSECILVEASRCLAAIFLSV-----RENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 731 (1890)
Q Consensus 670 ~~~~v~~~a~~aL~~L~~~~-----~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~ 731 (1890)
.++.++..++.+|.+|.... .+..+..+.+.|+++.+-.|..+++.++.+.|...|...+..
T Consensus 413 ~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999997521 112334478999999999999999999999999999888743
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1e-31 Score=349.77 Aligned_cols=411 Identities=16% Similarity=0.185 Sum_probs=351.5
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc-CchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHH
Q 000184 196 GGIDILVKLLTLGQSSTQAHVCFLLACMMEE-DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 274 (1890)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~ 274 (1890)
..++.+++.+.+++++.+..|+..++++.+. ..+....+++.|++|.|+++|..+++.+++..|+++|+|++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3589999999999999999999999887643 334578899999999999999887778899999999999999999999
Q ss_pred HHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHH
Q 000184 275 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 354 (1890)
Q Consensus 275 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 354 (1890)
..+++.|+||.|+.++.+++ ..+++.|+++|+|++.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~---------~~v~e~A~~aL~nLa~~---------------------------------- 192 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPH---------AHISEQAVWALGNIAGA---------------------------------- 192 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTT----------------------------------
T ss_pred HHHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHhcc----------------------------------
Confidence 99999999999999998875 67788888888887642
Q ss_pred hcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCC-----HHHHH
Q 000184 355 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT-----NEVQE 429 (1890)
Q Consensus 355 ~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~-----~~v~~ 429 (1890)
++..+..+.+.|++++|+.++...+ ...+.
T Consensus 193 ---------------------------------------------~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~ 227 (529)
T 3tpo_A 193 ---------------------------------------------GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 227 (529)
T ss_dssp ---------------------------------------------CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHH
T ss_pred ---------------------------------------------CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHH
Confidence 2334556667789999999887543 45678
Q ss_pred HHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCH
Q 000184 430 ELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSA 509 (1890)
Q Consensus 430 ~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 509 (1890)
.++++|.+++.+...........+++|.|+.++.+++++++..|+++|++++.+..+....+.+.|+++.|+.+|.++++
T Consensus 228 ~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~ 307 (529)
T 3tpo_A 228 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 307 (529)
T ss_dssp HHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCCh
Confidence 99999999998765544444446889999999999999999999999999998777778889999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHH
Q 000184 510 KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKV 589 (1890)
Q Consensus 510 ~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~ 589 (1890)
.++..++++|+||+..++..+..+.+.|++++|+.+++++++.++..|+|+|+|++.+...
T Consensus 308 ~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~------------------- 368 (529)
T 3tpo_A 308 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD------------------- 368 (529)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH-------------------
T ss_pred hHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH-------------------
Confidence 9999999999999998889999999999999999999999999999999999999874321
Q ss_pred HHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-ChhHHHHHHHcCchHHHHHhhc
Q 000184 590 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLD 668 (1890)
Q Consensus 590 ~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~-~~~~~~~~~~~g~i~~Lv~lL~ 668 (1890)
....+.+.|++|.|+.++.+++.+++..|+|+|+|++.+ .++.+..+++.|+|++|+.+|.
T Consensus 369 ------------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~ 430 (529)
T 3tpo_A 369 ------------------QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 430 (529)
T ss_dssp ------------------HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred ------------------HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc
Confidence 122344678899999999999999999999999999975 4566677899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHccC-----chhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000184 669 VGSECILVEASRCLAAIFLSV-----RENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 731 (1890)
Q Consensus 669 ~~~~~v~~~a~~aL~~L~~~~-----~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~ 731 (1890)
+.++.++..++.+|.+|.... .+.....+.+.|+++.+-.|..+++.++.+.|...|...+.+
T Consensus 431 ~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 431 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 498 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999997421 112334478999999999999999999999999999887743
No 13
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.4e-32 Score=348.35 Aligned_cols=400 Identities=20% Similarity=0.190 Sum_probs=323.2
Q ss_pred HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhc
Q 000184 103 LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS 182 (1890)
Q Consensus 103 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~ 182 (1890)
.+.+.||+||.+|.+++++.+..|+.+|.+++.+ +...+..+++.|+||.|+++|++. ++.++..++++|+||+
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~---~~~~k~~V~~~G~Ip~LV~LL~s~---~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYR---NDKVKTDVRKLKGIPVLVGLLDHP---KKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHGGGCS---SHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---ChHHHHHHHHcCCcHHHHHHHCCC---CHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999983 445566788999999999999873 5679999999999999
Q ss_pred cC-ChhHHHHHHhcCCHHHHHHhhcC-CCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHc------------
Q 000184 183 TS-TEGFWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG------------ 248 (1890)
Q Consensus 183 ~~-~~~~~~~i~~~g~v~~Lv~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~------------ 248 (1890)
.. ++.++..|+++||||+|+++|++ ++.+++++++++|++|+.. ++++..++ .+++++|++++.
T Consensus 119 ~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~ 196 (584)
T 3l6x_A 119 FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIV-DHALHALTDEVIIPHSGWEREPNE 196 (584)
T ss_dssp SSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHH-HHTHHHHHHHTHHHHHCCC-----
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHH-hccHHHHHHHHhcccccccccccc
Confidence 85 57899999999999999999997 6789999999999999875 45788888 468999999872
Q ss_pred -----CCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCC-hHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCc
Q 000184 249 -----SGNEASVRAEAAGALKSLSDHCKDARREIAGSNG-IPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLS 322 (1890)
Q Consensus 249 -----~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~ 322 (1890)
+..+.+++..|+++|+||+..++++|..+++++| ++.|+.++.+.. ..+..+...+++|+++|.||+....
T Consensus 197 ~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~---~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI---GQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHH---HTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhh---cccCccHHHHHHHHHHHHHhhcccc
Confidence 2235789999999999999988888999999866 569999996420 0011245789999999999997432
Q ss_pred hhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCc
Q 000184 323 NVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPL 402 (1890)
Q Consensus 323 ~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~ 402 (1890)
..+...+.+.+.. +... ......++.
T Consensus 274 ~e~~~~~~~~~~~--------------------------------------------~~~~----------~~~~~~~~~ 299 (584)
T 3l6x_A 274 REIPQAERYQEAA--------------------------------------------PNVA----------NNTGTSPAR 299 (584)
T ss_dssp HHSTTCCC--------------------------------------------------------------------CCCC
T ss_pred ccccchhhhhhhc--------------------------------------------cccc----------ccccccCch
Confidence 2111110000000 0000 000124555
Q ss_pred cchhhhhcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCc----hhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHH
Q 000184 403 LSIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEG----SLWRALQGREGIQLLISLLGLSSEQQQECSVALL 477 (1890)
Q Consensus 403 ~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~----~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 477 (1890)
....+.+.++++.|+.+|+ +.++.+++.|+++|+|||.++. ..+..+.+.+++|.|+++|.+++..++..|+++|
T Consensus 300 Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL 379 (584)
T 3l6x_A 300 GYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGAL 379 (584)
T ss_dssp GGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred hHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6677888889999999996 5689999999999999997642 2334566789999999999999999999999999
Q ss_pred HHcccCChhcHHHHHhcCCcHHHHHhccCC--------CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcC
Q 000184 478 CLLSNENDDSKWAITAAGGIPPLVQILESG--------SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG 549 (1890)
Q Consensus 478 ~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~ 549 (1890)
+||+. ++.++..| +.|+++.|+++|.++ +.+++..|+++|.||+..+++++..|.+.|+||+|+++++++
T Consensus 380 ~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~ 457 (584)
T 3l6x_A 380 RNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSG 457 (584)
T ss_dssp HHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred HHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC
Confidence 99996 56777766 789999999999876 468889999999999988899999999999999999999986
Q ss_pred --ChhHHHHHHHHHHHHhcCCC
Q 000184 550 --SANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 550 --~~~~~~~Aa~aL~~L~~~~~ 569 (1890)
++.+++.|+++|++|+.+.+
T Consensus 458 ~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 458 NRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp SSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCChHHHHHHHHHHHHHHcCHH
Confidence 88999999999999998654
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=9.1e-32 Score=340.96 Aligned_cols=380 Identities=18% Similarity=0.205 Sum_probs=305.5
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhc-CHH
Q 000184 194 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDH-CKD 272 (1890)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~-~~~ 272 (1890)
..++++.|+.+|++++++++..|+++|.+++..+++++..+++.|+||+|+++|+++ +.+++..|+++|+||+.+ +++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHccCCHH
Confidence 468899999999999999999999999999988888999999999999999999986 678999999999999985 689
Q ss_pred HHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHH
Q 000184 273 ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 352 (1890)
Q Consensus 273 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll 352 (1890)
+|..|+++|||+.|+.+|.+.. +..++++++.+|+||+.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~--------~~~~~e~aa~aL~nLS~--------------------------------- 163 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKAR--------DMDLTEVITGTLWNLSS--------------------------------- 163 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCC--------SHHHHHHHHHHHHHHTT---------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHcCCC--------CHHHHHHHHHHHHHHhC---------------------------------
Confidence 9999999999999999997632 25678888888888774
Q ss_pred HHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHh------------
Q 000184 353 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI------------ 420 (1890)
Q Consensus 353 ~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL------------ 420 (1890)
+++++..+.. ++++.|+.++
T Consensus 164 -----------------------------------------------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~ 195 (584)
T 3l6x_A 164 -----------------------------------------------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPN 195 (584)
T ss_dssp -----------------------------------------------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----
T ss_pred -----------------------------------------------CchhhHHHHh-ccHHHHHHHHhccccccccccc
Confidence 1222222221 2344444433
Q ss_pred ------cCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCc-HHHHHHhhCC------CCHHHHHHHHHHHHHcccCCh--
Q 000184 421 ------TMATNEVQEELVRALLKLCNNEGSLWRALQGREG-IQLLISLLGL------SSEQQQECSVALLCLLSNEND-- 485 (1890)
Q Consensus 421 ------~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~~------~~~~v~~~A~~aL~nL~~~~~-- 485 (1890)
...+.+++++|+++|+||+..+++.++.+++.+| ++.|+.++++ .+...++.|+++|+||+....
T Consensus 196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e 275 (584)
T 3l6x_A 196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE 275 (584)
T ss_dssp ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence 2347899999999999999987778888888655 6899999874 567899999999999985311
Q ss_pred -----------------------hcHHHHHhcCCcHHHHHhcc-CCCHHHHHHHHHHHHHHhcCC----hHHHHHHHhCC
Q 000184 486 -----------------------DSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHS----EDIRACVESAD 537 (1890)
Q Consensus 486 -----------------------~~~~~i~~~g~i~~Lv~lL~-~~~~~~~e~a~~aL~~L~~~~----~~~r~~i~~~g 537 (1890)
.....+...++++.|+.+|. +.++.+++.|+++|.|||... ..++..+.+.|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~ 355 (584)
T 3l6x_A 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEK 355 (584)
T ss_dssp STTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHH
T ss_pred ccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcC
Confidence 00111222344567788996 458999999999999998643 24555666789
Q ss_pred CHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcch
Q 000184 538 AVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDA 617 (1890)
Q Consensus 538 ~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~ 617 (1890)
++|.|++||.++++.+++.|+++|+||+.+... +..+ ..++
T Consensus 356 glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~--------------------------------------~~~I-~~g~ 396 (584)
T 3l6x_A 356 ALSAIADLLTNEHERVVKAASGALRNLAVDARN--------------------------------------KELI-GKHA 396 (584)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC--------------------------------------HHHH-HHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH--------------------------------------HHHH-HhCC
Confidence 999999999999999999999999999885432 1122 3578
Q ss_pred HHHHHHHhcCC--------CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCC--CHHHHHHHHHHHHHHHc
Q 000184 618 VETMIKILSST--------KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG--SECILVEASRCLAAIFL 687 (1890)
Q Consensus 618 i~~Lv~lL~s~--------~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~L~~ 687 (1890)
+|.|+.+|.++ ++++...|+++|.||+..+++.+..+.+.|+||+|+.+++++ ++.+++.|+.+|.+|..
T Consensus 397 ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 99999999876 578999999999999998899999999999999999999875 88999999999999976
Q ss_pred cCchhhHHHHHhCCChH
Q 000184 688 SVRENREVAAVARDALS 704 (1890)
Q Consensus 688 ~~~~~~~~~~~~~~~v~ 704 (1890)
+. ..+..+.+.|+-+
T Consensus 477 ~~--elr~~~kk~G~~~ 491 (584)
T 3l6x_A 477 YK--ELRKPLEKEGWKK 491 (584)
T ss_dssp SH--HHHHHHHTTTCCG
T ss_pred CH--HHHHHHHHcCCCH
Confidence 53 3444355555443
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.2e-31 Score=345.71 Aligned_cols=416 Identities=18% Similarity=0.186 Sum_probs=361.4
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhhHHHHhcCcHHHHHHhhCCCC-HHHHHHHHHHHHHcccCChhcH
Q 000184 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSS-EQQQECSVALLCLLSNENDDSK 488 (1890)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~ 488 (1890)
..++.|+..|.++++.++..|+++|.++..... .....+++.|++|.|+++|++++ +.++..|+++|++++.++++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 468999999999999999999999999976554 56778889999999999999887 9999999999999998778999
Q ss_pred HHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHh-hcCChhHHHHHHHHHHHHhcC
Q 000184 489 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHLIHK 567 (1890)
Q Consensus 489 ~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll-~~~~~~~~~~Aa~aL~~L~~~ 567 (1890)
..+.+.|+++.|+.+|.++++.+++.|+|+|++|+.+++.++..+.+.|++++|+.++ .+.++.++..++++|++|+.+
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998889999999999999999999 567889999999999999985
Q ss_pred CCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Q 000184 568 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 647 (1890)
Q Consensus 568 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~ 647 (1890)
.+... .....+++|.|+.++.++++.++..|+++|.+++.+.
T Consensus 234 ~~~~~--------------------------------------~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 275 (528)
T 4b8j_A 234 KPQPS--------------------------------------FEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT 275 (528)
T ss_dssp SSCCC--------------------------------------HHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC
T ss_pred CCCCc--------------------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 42210 0112567999999999999999999999999999988
Q ss_pred hhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHH
Q 000184 648 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALA 726 (1890)
Q Consensus 648 ~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~-~~ev~~~aa~aL~ 726 (1890)
++..+.+...|++|.|+.++.++++.++..++++|++++.+.+ .....+.+.|+++.|+.++.++ ++.++..|+|+|+
T Consensus 276 ~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 276 NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD-AQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH-HHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 7777788899999999999999999999999999999988654 4455578899999999999999 9999999999999
Q ss_pred HHhcC-chHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccch
Q 000184 727 NLILD-SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVAT 805 (1890)
Q Consensus 727 nL~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~ 805 (1890)
||+.+ ++....++..++++.|++++.+++..++..|+|+|.++...... ....++...|++++|+.+|.+.+..+.
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~--~~~~~l~~~~~i~~L~~lL~~~d~~v~- 431 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSH--DQIKYLVSEGCIKPLCDLLICPDIRIV- 431 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHHH-
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHHcCCCHHHH-
Confidence 99964 45566677889999999999999888999999999999976322 234455667999999999999888888
Q ss_pred HHHHHHHHHHHhcCCCC----CCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCC
Q 000184 806 SEALDALAILSRSGGAS----GHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQ 868 (1890)
Q Consensus 806 ~~al~~L~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~ 868 (1890)
..++.+|.++++..+.. .....++...++..+++++|...+.++|+.++++|..+|++||+.+
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999998755320 0123456777888899999999999999999999999999998754
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.2e-30 Score=341.05 Aligned_cols=422 Identities=18% Similarity=0.199 Sum_probs=362.5
Q ss_pred hcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhhHHHHhcCcHHHHHHhhCCC-CHHHHHHHHHHHHHcccCChh
Q 000184 409 NSEAKRLLVGLITMATNEVQEELVRALLKLCNNE-GSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDD 486 (1890)
Q Consensus 409 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~ 486 (1890)
..+.++.++..|+++++.++..|+.+|.++.... ......+.+.|++|.|+++|.++ ++.++..|+++|++++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3467999999999999999999999999986642 34556788899999999999997 899999999999999987788
Q ss_pred cHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000184 487 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 566 (1890)
Q Consensus 487 ~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 566 (1890)
.+..+++.|+++.|+.+|.++++.+++.|+|+|++|+.++++++..+...|++++|+.++.+.++.++..|+++|++|+.
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999888999999999999999999999889999999999999998
Q ss_pred CCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 000184 567 KSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1890)
Q Consensus 567 ~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~ 646 (1890)
+.++.. . .....+++|.|+.++.++++.++..|+++|.+|+..
T Consensus 245 ~~~~~~-------------~------------------------~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 245 GKKPQP-------------D------------------------WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp CSSSCC-------------C------------------------HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCC-------------c------------------------HHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 653210 0 011256799999999999999999999999999998
Q ss_pred ChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000184 647 RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 726 (1890)
Q Consensus 647 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~ 726 (1890)
.++....+...|++|.|+.++.++++.++..++++|++++.+.+ .....+.+.|+++.|+.+|.++++.+++.|+|+|+
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND-LQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH-HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 87777888889999999999999999999999999999987754 34444778999999999999999999999999999
Q ss_pred HHhc-CchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccch
Q 000184 727 NLIL-DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVAT 805 (1890)
Q Consensus 727 nL~~-~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~ 805 (1890)
||+. +++....++..++++.|+.++++++..++..|+|+|.++............++...|+++.|+.++.+.+..+.
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~- 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII- 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH-
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH-
Confidence 9995 45556667789999999999999988999999999999987643211233445667999999999999888888
Q ss_pred HHHHHHHHHHHhcCCCC----CCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCCc
Q 000184 806 SEALDALAILSRSGGAS----GHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQP 869 (1890)
Q Consensus 806 ~~al~~L~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~ 869 (1890)
..++.+|.+++...+.. .....++...++..++++.|...+.++++.++++|..+|++||.++.
T Consensus 446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 99999999998755320 01223456667788999999999999999999999999999987653
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.1e-30 Score=336.33 Aligned_cols=410 Identities=16% Similarity=0.180 Sum_probs=353.9
Q ss_pred CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCc-hhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHH
Q 000184 196 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 274 (1890)
Q Consensus 196 g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~ 274 (1890)
..++.|+..|.+++++++..|+..|+++..... .....+++.|++|.|+++|.++++.+++..|+++|.+++.++++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 469999999999999999999999999976554 5678889999999999999987557899999999999999889999
Q ss_pred HHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHH
Q 000184 275 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 354 (1890)
Q Consensus 275 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 354 (1890)
..+++.|+++.|+.+|.+++ ..+++.|+++|.|++.+
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~---------~~v~~~a~~aL~~l~~~---------------------------------- 190 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSS---------DDVREQAVWALGNVAGD---------------------------------- 190 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHHT----------------------------------
T ss_pred HHHHhCCcHHHHHHHhcCCC---------HHHHHHHHHHHHHHhCC----------------------------------
Confidence 99999999999999998754 67888888888887642
Q ss_pred hcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHh-cCCCHHHHHHHHH
Q 000184 355 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI-TMATNEVQEELVR 433 (1890)
Q Consensus 355 ~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~a~~ 433 (1890)
++..+..+...|+++.|+.++ .+.++.++..+++
T Consensus 191 ---------------------------------------------~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~ 225 (528)
T 4b8j_A 191 ---------------------------------------------SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 225 (528)
T ss_dssp ---------------------------------------------CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHH
T ss_pred ---------------------------------------------ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHH
Confidence 122334555678999999999 6779999999999
Q ss_pred HHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHH
Q 000184 434 ALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKE 513 (1890)
Q Consensus 434 aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e 513 (1890)
+|.+|+...+.... ....|+++.|++++.+++++++..++++|++|+.+.++....+.+.|+++.|+.+|.++++.++.
T Consensus 226 ~L~~L~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~ 304 (528)
T 4b8j_A 226 TLSNFCRGKPQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLI 304 (528)
T ss_dssp HHHHHHCSSSCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHcCCCCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHH
Confidence 99999987544333 34579999999999999999999999999999976666678899999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHH
Q 000184 514 DSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 592 (1890)
Q Consensus 514 ~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 592 (1890)
.|+++|+||+..++..+..+.+.|+++.|+.++.++ ++.++..|+++|+|++...+.
T Consensus 305 ~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~---------------------- 362 (528)
T 4b8j_A 305 PALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD---------------------- 362 (528)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH----------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH----------------------
Confidence 999999999998888888899999999999999998 899999999999999863211
Q ss_pred HHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-ChhHHHHHHHcCchHHHHHhhcCCC
Q 000184 593 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDVGS 671 (1890)
Q Consensus 593 ~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~ 671 (1890)
.++ .+...+++|.|+.+|.++++.++..|+++|.+++.. .++.+..+...|++++|+.++.+++
T Consensus 363 --------------~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d 427 (528)
T 4b8j_A 363 --------------QIQ-AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD 427 (528)
T ss_dssp --------------HHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred --------------HHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 011 223467899999999999999999999999999987 5677778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCch----------hhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000184 672 ECILVEASRCLAAIFLSVRE----------NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 731 (1890)
Q Consensus 672 ~~v~~~a~~aL~~L~~~~~~----------~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~ 731 (1890)
+.++..++.+|.+|+...+. .....+.+.|+++.+..+..++++++++.|.+.|.+++..
T Consensus 428 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 428 IRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999864322 1344578899999999999999999999999999998843
No 18
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=332.68 Aligned_cols=367 Identities=16% Similarity=0.146 Sum_probs=297.2
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCC---------CCchHHHHHHHH
Q 000184 107 CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK---------SGNVVDNLLTGA 177 (1890)
Q Consensus 107 ~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~---------~~~~v~~~~~~~ 177 (1890)
.++.|++++.+++.+. ..+.|..++.. ...+..+++.|++|.|+++++.... .++.++..+.++
T Consensus 33 ~~~~l~~~~~~~~~~~---~~~~ll~~~~~----~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~a 105 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKDD---MSRTLLAMSSS----QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAA 105 (458)
T ss_dssp ------------CCHH---HHHHHHHHHSS----TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHH---HHHHHHHHHcC----CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHH
Confidence 4788888888777663 56788888882 2244568999999999999996443 446899999999
Q ss_pred HHHhccCChhHHHHHHhcCCH----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHHHhhcCchhhhH
Q 000184 178 LRNLSTSTEGFWAATVQAGGI----------DILVKLLTLGQ--SS-----TQA-------HVCFLLACMMEEDVSVCSR 233 (1890)
Q Consensus 178 L~~L~~~~~~~~~~i~~~g~v----------~~Lv~lL~~~~--~~-----v~~-------~a~~~L~~L~~~~~~~~~~ 233 (1890)
|.|++.+.++......+.|.+ +.+++++.+.. .+ +++ +|+++|.+++.+ ++++..
T Consensus 106 l~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~ 184 (458)
T 3nmz_A 106 LHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA 184 (458)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHH
Confidence 999999888777777788888 77778888753 22 444 999999999655 679999
Q ss_pred hhccchHHHHHHHHcCC----------CCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCC-hHHHHHhhcCCCccccchhh
Q 000184 234 VLAADATKQLLKLLGSG----------NEASVRAEAAGALKSLSDHCKDARREIAGSNG-IPAMINATIAPSKEFMQGEY 302 (1890)
Q Consensus 234 i~~~g~i~~Lv~lL~~~----------~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~~~~~~~~ 302 (1890)
+++.|++++|+.+|..+ .+..++..|+++|.||+.+++.++..+...+| ||.|+.+|.+++
T Consensus 185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~-------- 256 (458)
T 3nmz_A 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES-------- 256 (458)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC--------
T ss_pred HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC--------
Confidence 99999999999999521 12568999999999999988778888876655 999999998754
Q ss_pred hHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCC
Q 000184 303 AQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL 382 (1890)
Q Consensus 303 ~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~ 382 (1890)
..++++|+++|.|++.+
T Consensus 257 -~~v~~~A~~aL~nLs~~-------------------------------------------------------------- 273 (458)
T 3nmz_A 257 -EDLQQVIASVLRNLSWR-------------------------------------------------------------- 273 (458)
T ss_dssp -HHHHHHHHHHHHHHTSS--------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHhcC--------------------------------------------------------------
Confidence 67888888888887641
Q ss_pred ChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHh-cCCCHHHHHHHHHHHHHhhccCchhhHHHH-hcCcHHHHHH
Q 000184 383 PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI-TMATNEVQEELVRALLKLCNNEGSLWRALQ-GREGIQLLIS 460 (1890)
Q Consensus 383 ~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~ 460 (1890)
.+++++..+.+.|++++|+.+| +++++.+++.++.+|+||+..+++++..+. ..|+++.|++
T Consensus 274 ----------------~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~ 337 (458)
T 3nmz_A 274 ----------------ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG 337 (458)
T ss_dssp ----------------CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHH
T ss_pred ----------------CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHH
Confidence 1233456677889999999975 667899999999999999986566777777 7899999999
Q ss_pred hhCCCCH----HHHHHHHHHHHHccc---CChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 000184 461 LLGLSSE----QQQECSVALLCLLSN---ENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 533 (1890)
Q Consensus 461 lL~~~~~----~v~~~A~~aL~nL~~---~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i 533 (1890)
+|.++++ ++++.|+++|+||+. +++++++.+.+.|++++|+++|.+++.++++.|+|+|+||+..+++.+..+
T Consensus 338 LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i 417 (458)
T 3nmz_A 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 417 (458)
T ss_dssp HTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9997754 589999999999996 688999999999999999999999999999999999999997779999999
Q ss_pred HhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000184 534 ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 568 (1890)
Q Consensus 534 ~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~ 568 (1890)
.+.|++|+|+++++++++++++.|+++|.||+.+.
T Consensus 418 ~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 418 WDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999998764
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.98 E-value=8.2e-31 Score=326.18 Aligned_cols=392 Identities=16% Similarity=0.140 Sum_probs=297.6
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCC-----------CHhHHHHHHHHHHHh
Q 000184 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-----------EASVRAEAAGALKSL 266 (1890)
Q Consensus 198 v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----------~~~~~~~Aa~aL~~L 266 (1890)
++.|+..+.+.+++ ...+.|..+.... +.|..+++.|.+|.|+++|+... +.+++..|+++|.|+
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~-~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQ-DSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSST-THHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCC-cHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 67777777777666 2566665665544 37788999999999999999743 268999999999999
Q ss_pred hhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHh
Q 000184 267 SDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLG 346 (1890)
Q Consensus 267 s~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~g 346 (1890)
+.+.++......+.|.++.|=. +. .++...+..+.... .+.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~-~~----------------~~~~~~~~~~~~~~-----------~~~~---------- 151 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHLLEQ-IR----------------AYCETCWEWQEAHE-----------PGMD---------- 151 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHH-HH----------------HHHHHHHHHHTTTS-----------SSSC----------
T ss_pred HccCcchhHHHHHHHHHHHHHH-hh----------------hhhHHHHHHHHhhc-----------cccc----------
Confidence 9999888877777776655422 21 11111111111000 0000
Q ss_pred HHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcC----
Q 000184 347 ALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM---- 422 (1890)
Q Consensus 347 al~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~---- 422 (1890)
+++... + ..-+..+..|+++|.+++.++++|..+.+.|++++|+.++..
T Consensus 152 -------------~~~~~~-~-------------~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~ 204 (458)
T 3nmz_A 152 -------------QDKNPM-P-------------APVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM 204 (458)
T ss_dssp -------------CCSCC----------------CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred -------------cccCCc-c-------------chhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcc
Confidence 000000 0 000012558999999999999999999999999999999952
Q ss_pred -------CCHHHHHHHHHHHHHhhccCchhhHHHHhcCc-HHHHHHhhCCCCHHHHHHHHHHHHHcccC-ChhcHHHHHh
Q 000184 423 -------ATNEVQEELVRALLKLCNNEGSLWRALQGREG-IQLLISLLGLSSEQQQECSVALLCLLSNE-NDDSKWAITA 493 (1890)
Q Consensus 423 -------~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~~i~~ 493 (1890)
.++.+++.|+++|.|||.+++.++..+...+| ||.|+++|+++++++++.|+++|+||+.+ +++++..+.+
T Consensus 205 ~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~ 284 (458)
T 3nmz_A 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE 284 (458)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34678999999999999987767777765555 99999999999999999999999999964 5678999999
Q ss_pred cCCcHHHHHh-ccCCCHHHHHHHHHHHHHHhcCChHHHHHHH-hCCCHHHHHHHhhcCChh----HHHHHHHHHHHHhcC
Q 000184 494 AGGIPPLVQI-LESGSAKAKEDSASILRNLCNHSEDIRACVE-SADAVPALLWLLKNGSAN----GKEIAAKTLNHLIHK 567 (1890)
Q Consensus 494 ~g~i~~Lv~l-L~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~-~~g~i~~Lv~ll~~~~~~----~~~~Aa~aL~~L~~~ 567 (1890)
.|+|++|+++ +.++++.+++.|+.+|+||+.++++++..|. ..|++|+|++++.++++. +++.|+++|+||+.+
T Consensus 285 ~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~ 364 (458)
T 3nmz_A 285 VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364 (458)
T ss_dssp TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc
Confidence 9999999997 4567899999999999999986678888888 799999999999987653 889999999998751
Q ss_pred CCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Q 000184 568 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 647 (1890)
Q Consensus 568 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~ 647 (1890)
+...++ .+..+.+.|++|.|+++|++++..+++.|+++|++++..+
T Consensus 365 ---------------------------------~a~~~~-~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~ 410 (458)
T 3nmz_A 365 ---------------------------------IATNED-HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN 410 (458)
T ss_dssp ---------------------------------HTTCHH-HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSC
T ss_pred ---------------------------------ccCCHH-HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Confidence 000011 1334567899999999999999999999999999999877
Q ss_pred hhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchh
Q 000184 648 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 692 (1890)
Q Consensus 648 ~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 692 (1890)
++.+..+.+.|++|+|+.++.++++.++..|+.+|.||+.+.|..
T Consensus 411 ~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~k 455 (458)
T 3nmz_A 411 PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455 (458)
T ss_dssp HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhh
Confidence 888999999999999999999999999999999999999877543
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.9e-30 Score=330.23 Aligned_cols=419 Identities=19% Similarity=0.176 Sum_probs=318.3
Q ss_pred ChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCCh
Q 000184 107 CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE 186 (1890)
Q Consensus 107 ~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~ 186 (1890)
.+|.|+.+|++++++.+..|+.+|.+++.+ +...+..+++.|++|.|+++|++ .++.++..++++|+||+..++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~---~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~~~~ 76 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ---DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNLVFRST 76 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSS---CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHHHSSCH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---ChHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCH
Confidence 689999999999999999999999999972 22233468899999999999986 456789999999999998878
Q ss_pred hHHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHc--------CC-------
Q 000184 187 GFWAATVQAGGIDILVKLLT-LGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG--------SG------- 250 (1890)
Q Consensus 187 ~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--------~~------- 250 (1890)
.++..++++|+||.|+++|+ ++++++++.++++|++++.. ++.+..+++ |++|+|++++. ++
T Consensus 77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~ 154 (457)
T 1xm9_A 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------C
T ss_pred HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhccc
Confidence 99999999999999999999 88999999999999999987 558888888 99999999993 22
Q ss_pred CCHhHHHHHHHHHHHhhhcCHHHHHHHHhc-CChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhh
Q 000184 251 NEASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLG 329 (1890)
Q Consensus 251 ~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~-g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~ 329 (1890)
.+.++...|+++|+||+.. ++++..+++. |+++.|+.++.+.. ..+..+...+++++++|.|++...+.....
T Consensus 155 ~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~-- 228 (457)
T 1xm9_A 155 VDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCV---AASRCDDKSVENCMCVLHNLSYRLDAEVPT-- 228 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHH---HHTCTTCTTHHHHHHHHHHHTTTHHHHSCC--
T ss_pred ccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhc---cccCCchHHHHHHHHHHHhcccchhccCcc--
Confidence 2456777999999999995 8899999998 99999999997521 001123457899999999998632111000
Q ss_pred ccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHH-HHHHhhCCCccchhhh
Q 000184 330 QSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIE-ALASLYGNPLLSIKLE 408 (1890)
Q Consensus 330 ~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~-aL~~L~~~~~~~~~l~ 408 (1890)
| ...+....+......+ ....+...... ++..... .+.....++.....+.
T Consensus 229 ----------------~-~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 229 ----------------R-YRQLEYNARNAYTEKS----------STGCFSNKSDK-MMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp ----------------H-HHHHHHTC---------------------------------------CCCCCSSCCGGGGGG
T ss_pred ----------------h-hhhccccccccccccc----------ccchhhccchh-hhhccccCCccccccCchHHHHHh
Confidence 0 0000000000000000 00000000000 0000000 0000012445566788
Q ss_pred hcCcHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchh-----hHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHccc
Q 000184 409 NSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSL-----WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN 482 (1890)
Q Consensus 409 ~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~-----~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~ 482 (1890)
+.|+++.|+.+|. ++++.+++.|+++|.|++.++... +..+.+.|++|.|+++|.+++.+++..|+++|+||+.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 8899999999997 457999999999999999865442 2234578999999999999999999999999999996
Q ss_pred CChhcHHHHHhcCCcHHHHHhccCCC------HHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcC-ChhHHH
Q 000184 483 ENDDSKWAITAAGGIPPLVQILESGS------AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKE 555 (1890)
Q Consensus 483 ~~~~~~~~i~~~g~i~~Lv~lL~~~~------~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~ 555 (1890)
+++++..+. .|++++|+++|..++ +++...++++|.|+...+++....+.+.|++++|++++.++ ++++++
T Consensus 361 -~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~ 438 (457)
T 1xm9_A 361 -HPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438 (457)
T ss_dssp -SGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHH
T ss_pred -CHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHH
Confidence 667776665 579999999999874 36888999999999988888999999999999999999999 999999
Q ss_pred HHHHHHHHHhcCCC
Q 000184 556 IAAKTLNHLIHKSD 569 (1890)
Q Consensus 556 ~Aa~aL~~L~~~~~ 569 (1890)
.|+++|.+++.+.+
T Consensus 439 ~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 439 AARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHcchh
Confidence 99999999998765
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=1.8e-29 Score=329.96 Aligned_cols=415 Identities=14% Similarity=0.160 Sum_probs=353.6
Q ss_pred hcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcC-chhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHH
Q 000184 194 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEED-VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD 272 (1890)
Q Consensus 194 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~ 272 (1890)
..+.++.|+..|.+++++++..|+..|+++.... ......+++.|.+|.|+++|.++.+..++..|+++|.+++.++++
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3477999999999999999999999999987543 335677888999999999999865678999999999999998888
Q ss_pred HHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHH
Q 000184 273 ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 352 (1890)
Q Consensus 273 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll 352 (1890)
.+..+++.|+++.|+.+|.+++ ..+++.|+++|.|++.+
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~---------~~vr~~A~~aL~~l~~~-------------------------------- 203 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGS---------VEVKEQAIWALGNVAGD-------------------------------- 203 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCC---------HHHHHHHHHHHHHHHTT--------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHhCC--------------------------------
Confidence 9999999999999999997653 67888888888887642
Q ss_pred HHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHH
Q 000184 353 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 432 (1890)
Q Consensus 353 ~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~ 432 (1890)
++..+..+...|+++.|+.++.+.++.++..++
T Consensus 204 -----------------------------------------------~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 204 -----------------------------------------------STDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp -----------------------------------------------CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred -----------------------------------------------CccchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Confidence 122333455678999999999999999999999
Q ss_pred HHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHH
Q 000184 433 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK 512 (1890)
Q Consensus 433 ~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 512 (1890)
++|.+++.............++++.|+.++.++++.++..++++|.+|+...++....+.+.|+++.|+.+|.++++.++
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~ 316 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhH
Confidence 99999998752333345567999999999999999999999999999997777788889999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHH
Q 000184 513 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 592 (1890)
Q Consensus 513 e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 592 (1890)
..|+++|++++..++.....+.+.|+++.|+.+++++++.++..|+++|++++.....
T Consensus 317 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~---------------------- 374 (530)
T 1wa5_B 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE---------------------- 374 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH----------------------
Confidence 9999999999987788888888999999999999999999999999999999863211
Q ss_pred HHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC-h--hHHHHHHHcCchHHHHHhhcC
Q 000184 593 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR-K--DLRESSIAVKTLWSVMKLLDV 669 (1890)
Q Consensus 593 ~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~-~--~~~~~~~~~g~i~~Lv~lL~~ 669 (1890)
.++ .+.+.+++|.|+.+|.++++.++..|+++|++++.+. + +....+...|++|+|+.++.+
T Consensus 375 --------------~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~ 439 (530)
T 1wa5_B 375 --------------QIQ-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI 439 (530)
T ss_dssp --------------HHH-HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT
T ss_pred --------------HHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC
Confidence 011 2234678999999999999999999999999999863 3 566778899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHccCch----------hhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCch
Q 000184 670 GSECILVEASRCLAAIFLSVRE----------NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 733 (1890)
Q Consensus 670 ~~~~v~~~a~~aL~~L~~~~~~----------~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~ 733 (1890)
.++.++..++.+|.+++...+. .....+.+.|+++.|..++.++++++++.|.++|.+++.+.+
T Consensus 440 ~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 440 ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999999999865332 123447889999999999999999999999999999985433
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=9.1e-29 Score=317.09 Aligned_cols=411 Identities=16% Similarity=0.153 Sum_probs=345.2
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhh-cCchhhhHhhcc-chHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHH
Q 000184 197 GIDILVKLLTLGQSSTQAHVCFLLACMME-EDVSVCSRVLAA-DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 274 (1890)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~-~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~ 274 (1890)
.++.|++.|.+++++++..|+..|+++.. ........+++. |.++.|+++|+++.+.+++..|+++|.+++.++++.+
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 48999999999999999999999998764 222234556676 9999999999987567899999999999999888888
Q ss_pred HHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHH
Q 000184 275 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 354 (1890)
Q Consensus 275 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~ 354 (1890)
..+++.|+++.|+.++.+++ ..+++.|+++|.|++.+.
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~---------~~vr~~a~~~L~~l~~~~--------------------------------- 138 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEF---------EDVQEQAVWALGNIAGDS--------------------------------- 138 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSC---------HHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhCCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHccCC---------------------------------
Confidence 88999999999999998754 677888888888876421
Q ss_pred hcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcC-CCHHHHHHHHH
Q 000184 355 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQEELVR 433 (1890)
Q Consensus 355 ~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~ 433 (1890)
+..+..+.+.|+++.|+.++++ .++.++..+++
T Consensus 139 ----------------------------------------------~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~ 172 (450)
T 2jdq_A 139 ----------------------------------------------TMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVW 172 (450)
T ss_dssp ----------------------------------------------HHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHH
T ss_pred ----------------------------------------------HHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHH
Confidence 1233345567899999999985 78999999999
Q ss_pred HHHHhhccC-chhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHH
Q 000184 434 ALLKLCNNE-GSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK 512 (1890)
Q Consensus 434 aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 512 (1890)
+|.+++... +.....+. .++++.|+++++++++.++..++++|.+++...++....+.+.|+++.|++++.++++.++
T Consensus 173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 999999764 33222233 6899999999999999999999999999997667788888999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHH
Q 000184 513 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVL 592 (1890)
Q Consensus 513 e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~ 592 (1890)
+.|+++|++++..++..+..+.+.|+++.|+.+++++++.++..|+++|.+++.+.+.
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~---------------------- 309 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRA---------------------- 309 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH----------------------
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH----------------------
Confidence 9999999999998777788888999999999999999999999999999999863221
Q ss_pred HHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-ChhHHHHHHHcCchHHHHHhhcCCC
Q 000184 593 DALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDVGS 671 (1890)
Q Consensus 593 ~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~ 671 (1890)
..+ .+.+.+++|.|+.++.++++++|..|+++|++++.+ .++....+...|++|+|+.++.+++
T Consensus 310 --------------~~~-~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 374 (450)
T 2jdq_A 310 --------------QIQ-TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD 374 (450)
T ss_dssp --------------HHH-HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSC
T ss_pred --------------HHH-HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence 011 223467899999999999999999999999999986 5566666778999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCchh----------hHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCch
Q 000184 672 ECILVEASRCLAAIFLSVREN----------REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE 733 (1890)
Q Consensus 672 ~~v~~~a~~aL~~L~~~~~~~----------~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~ 733 (1890)
+.++..++.+|.+++...+.. ....+.+.|+++.|..++.+++.++++.|..+|.+++.+.+
T Consensus 375 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 375 SKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 999999999999998654321 12347889999999999999999999999999999985543
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1e-29 Score=323.55 Aligned_cols=358 Identities=17% Similarity=0.154 Sum_probs=302.5
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhC-CCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHH
Q 000184 371 EQTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 449 (1890)
Q Consensus 371 ~~~L~~ll~~~~~~~~~~~a~~aL~~L~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 449 (1890)
+|.|++++++++++ +|..|+.+|.+++. ++..+..+.+.|++|.|+.+|+++++++|+.|+++|+||+..+++++..|
T Consensus 4 l~~lv~~L~s~~~~-~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEK-YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTH-HHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 46688888877665 69999999999965 55567789999999999999999999999999999999999878899999
Q ss_pred HhcCcHHHHHHhhC-CCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhc--------cCC--------CHHHH
Q 000184 450 QGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL--------ESG--------SAKAK 512 (1890)
Q Consensus 450 ~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL--------~~~--------~~~~~ 512 (1890)
++.|++|.|+++|+ ++++++++.|+++|+||+.+ ++++..+++ |++|+|+++| .++ ++.+.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 88999999999999999974 888999999 9999999999 333 34555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhC-CCHHHHHHHhhc------CChhHHHHHHHHHHHHhcCC-----------------
Q 000184 513 EDSASILRNLCNHSEDIRACVESA-DAVPALLWLLKN------GSANGKEIAAKTLNHLIHKS----------------- 568 (1890)
Q Consensus 513 e~a~~aL~~L~~~~~~~r~~i~~~-g~i~~Lv~ll~~------~~~~~~~~Aa~aL~~L~~~~----------------- 568 (1890)
+.|+|+|+||+.+ +++|..+.+. |++++|+.++++ .+.+.++.+..+|+||++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 6999999999986 8899999997 999999999986 35678899999999997320
Q ss_pred -----------------------------------------CCCcHHHHHHHHhcC-CcchHHHHHHHHHHHhhhcCc-h
Q 000184 569 -----------------------------------------DTATISQLTALLTSD-LPESKVYVLDALKSMLSVVSF-S 605 (1890)
Q Consensus 569 -----------------------------------------~~~~i~~L~~lL~~~-~~~~~~~a~~aL~~L~~~~~~-~ 605 (1890)
+.++++.|+.+|.+. ++.+++.+..+|++++.-... .
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 123567788888654 578899999999998864432 2
Q ss_pred HHH-HHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCC------HHHHHHH
Q 000184 606 DIL-REGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS------ECILVEA 678 (1890)
Q Consensus 606 ~~~-~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~------~~v~~~a 678 (1890)
..+ |..+.+.+|+|.|+++|.++++++++.|+|+|.+++.+ +..+. ++..|++|+|+++|.+++ ++++..+
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~-~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHH-HHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 223 55666789999999999999999999999999999986 45554 445689999999997653 4688999
Q ss_pred HHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCchHH
Q 000184 679 SRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEVS 735 (1890)
Q Consensus 679 ~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~-~~ev~~~aa~aL~nL~~~~~~~ 735 (1890)
+.+|.++..+.+ .+...+.+.|++++|++++.++ ++++++.|++.|+|++.+++.+
T Consensus 398 l~~l~ni~~~~~-~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 398 CYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp HHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred HHHHHHHHhcCH-HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 999999988765 4555588999999999999999 9999999999999999776653
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=5.8e-29 Score=318.90 Aligned_cols=417 Identities=17% Similarity=0.172 Sum_probs=351.9
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCchhhHHHHhc-CcHHHHHHhhCCC-CHHHHHHHHHHHHHcccCChhcH
Q 000184 412 AKRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGR-EGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSK 488 (1890)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~~i~~~-g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~ 488 (1890)
.++.+++.++++++.+|..|+.+|+++.. ........+.+. |+++.|+++|+++ ++.++..|+++|.+++.++++.+
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 47889999999999999999999999764 222233456666 9999999999998 89999999999999998778888
Q ss_pred HHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcC
Q 000184 489 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHK 567 (1890)
Q Consensus 489 ~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~ 567 (1890)
..+.+.|+++.|+++|.++++.+|+.|+++|++++.++++.+..+.+.|+++.|+.++++ .++.+++.++++|++++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999999999999999888899999999999999999996 6889999999999999975
Q ss_pred CCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcC
Q 000184 568 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETR 647 (1890)
Q Consensus 568 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~ 647 (1890)
.++.. . . .. ..+++|.|++++.++++.++..++++|.+++...
T Consensus 181 ~~~~~-------------~----------------------~-~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 181 KSPPP-------------E----------------------F-AK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp SSSCC-------------C----------------------G-GG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred CCCCC-------------C----------------------H-HH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 42200 0 0 11 1567999999999999999999999999999987
Q ss_pred hhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHH
Q 000184 648 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 727 (1890)
Q Consensus 648 ~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~n 727 (1890)
++....+...|++|.|+.++.++++.++..++++|++++.+.+ .....+.+.|+++.|++++.++++.++..|+++|+|
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD-IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh-HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7777778889999999999999999999999999999987754 344447788999999999999999999999999999
Q ss_pred Hhc-CchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchH
Q 000184 728 LIL-DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATS 806 (1890)
Q Consensus 728 L~~-~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~ 806 (1890)
|+. .++....+++.++++.|+.+++++++.++..|+|+|.++...... ....++...|.++.|++++.+.+.++. .
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~-~ 379 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSA--EQIKYLVELGCIKPLCDLLTVMDSKIV-Q 379 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHTCHHHHHHGGGSSCHHHH-H
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHhcCCCHHHH-H
Confidence 995 455566677889999999999999999999999999999875321 122334567999999999999888888 9
Q ss_pred HHHHHHHHHHhcCCCC----CCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCCc
Q 000184 807 EALDALAILSRSGGAS----GHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQP 869 (1890)
Q Consensus 807 ~al~~L~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~ 869 (1890)
.++.+|.+++...+.. ....+++...+...++++.|...+.++++.++++|..+|++||+++.
T Consensus 380 ~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 380 VALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999998754320 01123445556667889999999999999999999999999987653
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=5e-26 Score=275.56 Aligned_cols=270 Identities=20% Similarity=0.156 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCC-----------CCHHHHHHHHHHHHHcccCChhcHHHHHhc
Q 000184 426 EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-----------SSEQQQECSVALLCLLSNENDDSKWAITAA 494 (1890)
Q Consensus 426 ~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~ 494 (1890)
..+..|+++|.|++.+ ++++..+.+.|++++|+.+|.. .++.+|++|+++|.||+.++++++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4556899999999988 6899999999999999999952 246799999999999998777788888655
Q ss_pred -CCcHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhCCCHHHHHHHh-hcCChhHHHHHHHHHHHHhcCCCCC
Q 000184 495 -GGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHLIHKSDTA 571 (1890)
Q Consensus 495 -g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~-~~~~r~~i~~~g~i~~Lv~ll-~~~~~~~~~~Aa~aL~~L~~~~~~~ 571 (1890)
|+||+|+++|.++++++++.|+|+|.||+.. ++++|..|.+.|++|+|+++| +++++.+++.|+.+|+||+.+.+.
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~- 204 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE- 204 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH-
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh-
Confidence 4599999999999999999999999999984 578999999999999999975 567889999999999999874321
Q ss_pred cHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhh-hhcchHHHHHHHhcCCCH----HHHHHHHHHHHHHhh-
Q 000184 572 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS-AANDAVETMIKILSSTKE----ETQAKSASALAGIFE- 645 (1890)
Q Consensus 572 ~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~-~~~~~i~~Lv~lL~s~~~----~~~~~A~~aL~~L~~- 645 (1890)
.+..+ ...|++|.|+++|+++++ ++++.|+++|.+|+.
T Consensus 205 ------------------------------------nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~ 248 (354)
T 3nmw_A 205 ------------------------------------NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248 (354)
T ss_dssp ------------------------------------HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh
Confidence 01122 257899999999988765 599999999999997
Q ss_pred --cChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000184 646 --TRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATC 723 (1890)
Q Consensus 646 --~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~ 723 (1890)
.+++.+..+.+.|++|+|+.+|++++..+++.|+++|.|++.+.+ .++..+.+.|++++|+++++++++++++.|++
T Consensus 249 ~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~ 327 (354)
T 3nmw_A 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP-KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327 (354)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH-HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 678888899999999999999999999999999999999986654 55666899999999999999999999999999
Q ss_pred HHHHHhcCchH
Q 000184 724 ALANLILDSEV 734 (1890)
Q Consensus 724 aL~nL~~~~~~ 734 (1890)
+|+||+.+.+.
T Consensus 328 aL~nL~~~~~~ 338 (354)
T 3nmw_A 328 ALRNLMANRPA 338 (354)
T ss_dssp HHHHHHTTCCG
T ss_pred HHHHHHcCCHH
Confidence 99999965443
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=6.1e-26 Score=274.76 Aligned_cols=275 Identities=16% Similarity=0.136 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhccCchhhHHHHhcCc
Q 000184 386 VQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-----------ATNEVQEELVRALLKLCNNEGSLWRALQGREG 454 (1890)
Q Consensus 386 ~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~ 454 (1890)
.+..|+++|.+++.++++|..+.+.|+++.|+.+|.+ .++.+|+.|+++|.|||.++..++..+...+|
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 3668999999999999999999999999999999952 24679999999999999987767777765555
Q ss_pred -HHHHHHhhCCCCHHHHHHHHHHHHHcccC-ChhcHHHHHhcCCcHHHHHh-ccCCCHHHHHHHHHHHHHHhcCChHHHH
Q 000184 455 -IQLLISLLGLSSEQQQECSVALLCLLSNE-NDDSKWAITAAGGIPPLVQI-LESGSAKAKEDSASILRNLCNHSEDIRA 531 (1890)
Q Consensus 455 -i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~-~~~~~~~i~~~g~i~~Lv~l-L~~~~~~~~e~a~~aL~~L~~~~~~~r~ 531 (1890)
||.|+++|+++++++++.|+++|+||+.. +++++..+.+.|+|++|+++ ++++++++++.|+++|+||+.++++++.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 99999999999999999999999999964 56789999999999999997 4667899999999999999987778888
Q ss_pred HHH-hCCCHHHHHHHhhcCCh----hHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchH
Q 000184 532 CVE-SADAVPALLWLLKNGSA----NGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 606 (1890)
Q Consensus 532 ~i~-~~g~i~~Lv~ll~~~~~----~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~ 606 (1890)
.+. ..|++|+|+++++++++ .+++.|+++|+||+.+ +...++
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~---------------------------------~a~~~~ 254 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL---------------------------------IATNED 254 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHH---------------------------------HTTCHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhh---------------------------------ccCCHH
Confidence 888 79999999999998765 3889999999998751 000011
Q ss_pred HHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000184 607 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 686 (1890)
Q Consensus 607 ~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 686 (1890)
.+..+.+.|++|.|+++|++++..+++.|+++|++|+.++++.+..+.+.|++|+|+.+++++++.+++.|+.+|.+|+
T Consensus 255 -~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 255 -HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp -HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 2335667899999999999999999999999999999877888889999999999999999999999999999999999
Q ss_pred ccCchhhH
Q 000184 687 LSVRENRE 694 (1890)
Q Consensus 687 ~~~~~~~~ 694 (1890)
.+.+...+
T Consensus 334 ~~~~~~~~ 341 (354)
T 3nmw_A 334 ANRPAKYK 341 (354)
T ss_dssp TTCCGGGC
T ss_pred cCCHHHHh
Confidence 88765443
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.7e-23 Score=263.00 Aligned_cols=552 Identities=12% Similarity=0.090 Sum_probs=368.1
Q ss_pred CchHHHHHHhh--cCCHHHHHHHHHHHHHhhccch--hhHHHHhcCChHHHH-Hhhc-CCCHHHHHHHHHHHHHHhcCCC
Q 000184 65 QAVPVLVSLLR--SGSLAVKIQAATVLGSLCKENE--LRVKVLLGGCIPPLL-GLLK-SSSAEGQIAAAKTIYAVSQGGA 138 (1890)
Q Consensus 65 g~v~~Lv~lL~--~~~~~~~~~aa~~L~~L~~~~~--~~~~i~~~g~i~~Lv-~lL~-~~~~~~~~~a~~aL~~ls~~~~ 138 (1890)
+.+..|++.|. ...++++.-+.-++..+-+... ....+. ..+..++ .-=. .++.+. ..+..++..+-- .
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~--~~~~~l~~e~~~~~~~~~~-~~~~~~l~~lfP--i 242 (778)
T 3opb_A 168 KEVRFLVKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVV--DFMSSLIVEAEIDVGNDPL-SIIVKTLSELYP--S 242 (778)
T ss_dssp TTTTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTCSSCHH-HHHHHHHHHHTT--T
T ss_pred cchhhHHHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHH--HHHHHHHHhhccCCCCccH-HHHHHHHHHHhc--C
Confidence 33777888775 4566888777777766542111 111111 1223222 0001 122222 223334433322 1
Q ss_pred CCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHH
Q 000184 139 KDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCF 218 (1890)
Q Consensus 139 ~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~ 218 (1890)
-...+..+|..+|..|.+.+.+... .+..+...++..|...| .+...|..+ ..++++.|.+++++ ..++..|+.
T Consensus 243 ~p~~~s~lfl~e~~~~~l~~~~~~~--~~~~~~~a~L~lLsaAC-i~~~cR~~I-~~~~~~~L~~~l~~--~~ir~lAav 316 (778)
T 3opb_A 243 LTTLCSEIFLTKGLSKLFKKRVFEE--QDLQFTKELLRLLSSAC-IDETMRTYI-TENYLQLLERSLNV--EDVQIYSAL 316 (778)
T ss_dssp THHHHHHHHSTTTHHHHHHHHHHSS--CCHHHHHHHHHHHHHHC-CSHHHHHHH-HHHHHHHHHHHTTS--GGGHHHHHH
T ss_pred CHHHHHHHHccccHHHHHHHHHhcc--cchHHHHHHHHHHHHHh-CCcHHHHHH-HHhHHHHHHHHhcc--HHHHHHHHH
Confidence 2334567899999999999888764 33445556666676666 555666655 56788999999976 588999999
Q ss_pred HHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCC-hHHHHHhhcCCCccc
Q 000184 219 LLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNG-IPAMINATIAPSKEF 297 (1890)
Q Consensus 219 ~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~~~ 297 (1890)
+|..+..........+ ....+.+.+.|.++ +.+.+..|.+.|.+|+. .++.|..+++..+ +..|+.++..+.
T Consensus 317 vL~KL~~~~~~~~~si--~~La~~~~~~L~~~-~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~--- 389 (778)
T 3opb_A 317 VLVKTWSFTKLTCINL--KQLSEIFINAISRR-IVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQK--- 389 (778)
T ss_dssp HHHHHTGGGTCTTCCH--HHHHHHHHHHTTTC-CHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTC---
T ss_pred HHHHHhcCCCCCcCcH--HHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCC---
Confidence 9988875433211111 23567788888875 44569999999999999 6788999987655 999999997522
Q ss_pred cchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhh
Q 000184 298 MQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQ 377 (1890)
Q Consensus 298 ~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~l 377 (1890)
+..+...++.+|.|++...+...... ..+.+ |.++
T Consensus 390 -----d~s~~Ygal~IL~NLt~~~~~~~~e~-----------------~~l~~-----------------------Lk~~ 424 (778)
T 3opb_A 390 -----MTHCLYGLLVIMANLSTLPEEXXXXX-----------------XXXXX-----------------------XXXX 424 (778)
T ss_dssp -----CTTHHHHHHHHHHHTTCCCCCCCCCC-----------------C-------------------------------
T ss_pred -----CchHHHHHHHHHHHhcCCCcccchhh-----------------hhhhh-----------------------hhhh
Confidence 35789999999999987433211100 00011 1111
Q ss_pred cCCCCChHHHHHHHHHHHHhhCCCc-cchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHH
Q 000184 378 FKPRLPFLVQERTIEALASLYGNPL-LSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQ 456 (1890)
Q Consensus 378 l~~~~~~~~~~~a~~aL~~L~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~ 456 (1890)
.+.+.++. +.... .+.+=.+..+ ++..+.+.|+++.|+.+++++++.+|+.++++|.|++.+ +.++..+++.|+++
T Consensus 425 A~~~~p~~-~~~d~-~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~ 501 (778)
T 3opb_A 425 XXXXXPAA-DKVGA-EKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVK 501 (778)
T ss_dssp -----------CCT-HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHH
T ss_pred ccccCccc-Ccccc-cccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHH
Confidence 11110000 00000 0000001112 457788999999999999999999999999999999976 77899999999999
Q ss_pred HHHHhhCCCCHH---HHHHHHHHHHHcccCChhcHHHHHh---cCCcHHHHHhccC--CCH------------HHHHHHH
Q 000184 457 LLISLLGLSSEQ---QQECSVALLCLLSNENDDSKWAITA---AGGIPPLVQILES--GSA------------KAKEDSA 516 (1890)
Q Consensus 457 ~Lv~lL~~~~~~---v~~~A~~aL~nL~~~~~~~~~~i~~---~g~i~~Lv~lL~~--~~~------------~~~e~a~ 516 (1890)
+|++++.+.... .+..|+.+|.+|.. ..+....+.. .|+|++|+.+|.. +.. -.+..|+
T Consensus 502 ~LL~lL~s~~~~~~~~k~~AA~ALArLli-s~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL 580 (778)
T 3opb_A 502 IILEYLANKQDIGEPIRILGCRALTRMLI-FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEAL 580 (778)
T ss_dssp HHHHHTTCC---CCHHHHHHHHHHHHHHH-TSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHH
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHh-cCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHH
Confidence 999999988654 89999999999984 2222233311 3899999999983 211 2367899
Q ss_pred HHHHHHhcCC----hHHHHHHHhC-CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHH
Q 000184 517 SILRNLCNHS----EDIRACVESA-DAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYV 591 (1890)
Q Consensus 517 ~aL~~L~~~~----~~~r~~i~~~-g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a 591 (1890)
.+|.||+..+ ++.|..|.+. |+++.|.+++.++++.+++.|+++++||+.+++. +.
T Consensus 581 ~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~--i~----------------- 641 (778)
T 3opb_A 581 LALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT--IA----------------- 641 (778)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG--TG-----------------
T ss_pred HHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH--HH-----------------
Confidence 9999999965 3568888885 9999999999999999999999999999874431 00
Q ss_pred HHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHc-CchHHHHHhhcC-
Q 000184 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV-KTLWSVMKLLDV- 669 (1890)
Q Consensus 592 ~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~-g~i~~Lv~lL~~- 669 (1890)
....... .-...++++.|+.++.++++++|++|+++|++++...+..+..+.+. ++++.|+.++.+
T Consensus 642 -------~k~~~~~-----~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~ 709 (778)
T 3opb_A 642 -------AKFFNLE-----NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ 709 (778)
T ss_dssp -------GGTSCCS-----SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -------HHHHhhc-----CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc
Confidence 0000000 00113359999999999999999999999999987778777777776 799999999987
Q ss_pred -CCHHHHHHHHHHHHHHHccCch----hhHHHHH-hCCChHHHHHHhCCCC
Q 000184 670 -GSECILVEASRCLAAIFLSVRE----NREVAAV-ARDALSPLVVLAGSPV 714 (1890)
Q Consensus 670 -~~~~v~~~a~~aL~~L~~~~~~----~~~~~~~-~~~~v~~Lv~ll~~~~ 714 (1890)
++++++..++.++.||+.-.++ ..-..+. .......|.+++++++
T Consensus 710 ~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 710 IDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 8999999999999999852211 1111122 3445555666665543
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.5e-23 Score=265.48 Aligned_cols=422 Identities=14% Similarity=0.121 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHh-hccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHh
Q 000184 211 STQAHVCFLLACMMEEDVSVCSRV-LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINA 289 (1890)
Q Consensus 211 ~v~~~a~~~L~~L~~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~l 289 (1890)
+-...+..+|..+.--.++.+..+ ...|..+.+.+.+.+.++..+...+...|.. ++.+..+|..| ..+.++.|...
T Consensus 227 ~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsa-ACi~~~cR~~I-~~~~~~~L~~~ 304 (778)
T 3opb_A 227 DPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSS-ACIDETMRTYI-TENYLQLLERS 304 (778)
T ss_dssp CHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHH-HCCSHHHHHHH-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHH-HhCCcHHHHHH-HHhHHHHHHHH
Confidence 334455666655554445455444 5678888888888776665444444444444 44467777777 45667888877
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhh
Q 000184 290 TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLI 369 (1890)
Q Consensus 290 l~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~ 369 (1890)
+.+ ..++..|+-+|+.+..
T Consensus 305 l~~-----------~~ir~lAavvL~KL~~-------------------------------------------------- 323 (778)
T 3opb_A 305 LNV-----------EDVQIYSALVLVKTWS-------------------------------------------------- 323 (778)
T ss_dssp TTS-----------GGGHHHHHHHHHHHTG--------------------------------------------------
T ss_pred hcc-----------HHHHHHHHHHHHHHhc--------------------------------------------------
Confidence 743 1234444444444321
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCcc-chhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHH
Q 000184 370 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLL-SIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 448 (1890)
Q Consensus 370 i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 448 (1890)
.+.. ...+ ....+.++..+..++.+.+++|++.|.+++.. +..++.
T Consensus 324 ------------------------------~~~~~~~si--~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~ 370 (778)
T 3opb_A 324 ------------------------------FTKLTCINL--KQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIM 370 (778)
T ss_dssp ------------------------------GGTCTTCCH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHH
T ss_pred ------------------------------CCCCCcCcH--HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHH
Confidence 1110 0001 12345566667666666799999999999987 455666
Q ss_pred HHh-cCcHHHHHHhhCC-CCHHHHHHHHHHHHHcccCChh--------------------------------------cH
Q 000184 449 LQG-REGIQLLISLLGL-SSEQQQECSVALLCLLSNENDD--------------------------------------SK 488 (1890)
Q Consensus 449 i~~-~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~--------------------------------------~~ 488 (1890)
+++ .+.++.|+++++. .+..+.+.++.+|.||+...+. ++
T Consensus 371 L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~ 450 (778)
T 3opb_A 371 IRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE 450 (778)
T ss_dssp HHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHH
Confidence 655 4559999999995 7888999999999999963221 45
Q ss_pred HHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChh---HHHHHHHHHHHHh
Q 000184 489 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN---GKEIAAKTLNHLI 565 (1890)
Q Consensus 489 ~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~---~~~~Aa~aL~~L~ 565 (1890)
..+.++|++|+|+.++.++++.+|+.++++|.||+. ++++|..++++|++++|+.++.++++. ++..|+++|.++.
T Consensus 451 ~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999997 489999999999999999999998655 8999999999998
Q ss_pred cCCC----------CCcHHHHHHHHhc--CCcc------------hHHHHHHHHHHHhhhcCc-hHHHHHhhhh-cchHH
Q 000184 566 HKSD----------TATISQLTALLTS--DLPE------------SKVYVLDALKSMLSVVSF-SDILREGSAA-NDAVE 619 (1890)
Q Consensus 566 ~~~~----------~~~i~~L~~lL~~--~~~~------------~~~~a~~aL~~L~~~~~~-~~~~~~~~~~-~~~i~ 619 (1890)
.+.+ .+++++|+.+|.. +... .+..|+.||.+|+...+. .+-++..+.. .++++
T Consensus 530 is~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~ 609 (778)
T 3opb_A 530 IFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWS 609 (778)
T ss_dssp HTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHH
T ss_pred hcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHH
Confidence 6544 2788999999983 2111 155688888888776543 1223444445 48999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHH------HcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhh
Q 000184 620 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSI------AVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 693 (1890)
Q Consensus 620 ~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 693 (1890)
.|..+|.++++.+|++|+++++||+.+.......+. ..+.+++|+.++++++.+++++|+++|.+++.+.+...
T Consensus 610 ~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia 689 (778)
T 3opb_A 610 TIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIA 689 (778)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHH
Confidence 999999999999999999999999986432211222 12248899999999999999999999999976655444
Q ss_pred HHHHHhC-CChHHHHHHhCC--CCHHHHHHHHHHHHHHhc
Q 000184 694 EVAAVAR-DALSPLVVLAGS--PVLEVAEQATCALANLIL 730 (1890)
Q Consensus 694 ~~~~~~~-~~v~~Lv~ll~~--~~~ev~~~aa~aL~nL~~ 730 (1890)
+. +.+. ++++.++.++.+ ++++++.+++.++.||+.
T Consensus 690 ~~-ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 690 KE-LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HH-HTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HH-HHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 55 5555 899999999998 899999999999999984
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.89 E-value=1.7e-21 Score=227.98 Aligned_cols=243 Identities=25% Similarity=0.319 Sum_probs=224.2
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHH
Q 000184 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1890)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 490 (1890)
|.++.|+.+|++++++++..|+++|.+++..++.++..+.+.|+++.|+++|++++++++..|+++|.+++..+++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999999999999999999999987778889999999999999999999999999999999999866899999
Q ss_pred HHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000184 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 570 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~ 570 (1890)
+.+.|+++.|+.++.++++++++.|+++|++|+..+++.+..+.+.|+++.|+++++++++.++..++++|++|+.+.+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999977899999999999999999999999999999999999999874321
Q ss_pred CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhH
Q 000184 571 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 650 (1890)
Q Consensus 571 ~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~ 650 (1890)
....+.+.++++.|++++.++++.++..|+++|.+++.++++.
T Consensus 162 -------------------------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 162 -------------------------------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp -------------------------------------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred -------------------------------------HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1123445788999999999999999999999999999988888
Q ss_pred HHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCc
Q 000184 651 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 690 (1890)
Q Consensus 651 ~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 690 (1890)
+..+...|+++.|+.++.++++.++..|+++|.+|+...+
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 8889999999999999999999999999999999987654
No 30
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.89 E-value=4.4e-19 Score=255.50 Aligned_cols=1003 Identities=13% Similarity=0.102 Sum_probs=593.3
Q ss_pred HHHHHHHHHHHHhhCCCccc-hhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC
Q 000184 385 LVQERTIEALASLYGNPLLS-IKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG 463 (1890)
Q Consensus 385 ~~~~~a~~aL~~L~~~~~~~-~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 463 (1890)
.+|..|...|.+....+... ..-.....++.++..+.+.++.+|..|+.+|.+++..-+. ..+ ...++.|+..+.
T Consensus 21 ~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~ 96 (1230)
T 1u6g_C 21 DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNML 96 (1230)
T ss_dssp HHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhc
Confidence 35888888888765443211 1111224677888899999999999999999999865333 111 235688888899
Q ss_pred CCCHHHHHHHHHHHHHcccCChhcH-----HHHHhcCCcHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChH-HHHHHHhC
Q 000184 464 LSSEQQQECSVALLCLLSNENDDSK-----WAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSED-IRACVESA 536 (1890)
Q Consensus 464 ~~~~~v~~~A~~aL~nL~~~~~~~~-----~~i~~~g~i~~Lv~lL~-~~~~~~~e~a~~aL~~L~~~~~~-~r~~i~~~ 536 (1890)
++++.+|..|+.+|..++....... ..-.-...+|.|+..+. +++..+++.|+.+|..++...+. .... -.
T Consensus 97 d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~ 174 (1230)
T 1u6g_C 97 SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HP 174 (1230)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HH
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HH
Confidence 9999999999999998874332210 01112347899999998 57899999999999999852111 1000 02
Q ss_pred CCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC----CcHHHHHHHHhcCC-cchHHHHHHHHHHHhhhcCchHHHHHh
Q 000184 537 DAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT----ATISQLTALLTSDL-PESKVYVLDALKSMLSVVSFSDILREG 611 (1890)
Q Consensus 537 g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~----~~i~~L~~lL~~~~-~~~~~~a~~aL~~L~~~~~~~~~~~~~ 611 (1890)
..++.|+..+.+.++.++..|+.+|..++...+. ..++.++..+.+.. +..+..+..+++.+....+.. +..
T Consensus 175 ~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~- 251 (1230)
T 1u6g_C 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IGE- 251 (1230)
T ss_dssp HHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GTT-
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH--HHH-
Confidence 3567788888888889999999999999876542 34777777776653 456777888888877643321 110
Q ss_pred hhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCC---------------------
Q 000184 612 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG--------------------- 670 (1890)
Q Consensus 612 ~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~--------------------- 670 (1890)
.-...+|.+...+.+.++++|+.+..++..++...+.... ..-...+|.+++.+..+
T Consensus 252 -~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~ 329 (1230)
T 1u6g_C 252 -YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY-PHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 329 (1230)
T ss_dssp -SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHTTCCCCC---------------------
T ss_pred -HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHH-HhHHHHHHHHHHHhCCCCCCCCcccccccccccccccc
Confidence 1145689999999999999999999999999886442111 11234566665555310
Q ss_pred ----------------CHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--C-
Q 000184 671 ----------------SECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--D- 731 (1890)
Q Consensus 671 ----------------~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~--~- 731 (1890)
...++..++.++..++...++.. ...-...++.++..+++.++++|..+..++..++. .
T Consensus 330 ~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 407 (1230)
T 1u6g_C 330 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML--PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRP 407 (1230)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHTTCCTTH--HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCC
T ss_pred cchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH--HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcc
Confidence 12357889999999876443211 12336678888888899999999999999988862 1
Q ss_pred ----------------chHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHH
Q 000184 732 ----------------SEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSF 795 (1890)
Q Consensus 732 ----------------~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~ 795 (1890)
+.......-..+++.+.+.+++.+..+|..+..+|..+....+. .+.. .-...++.++..
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~--~l~~--~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 408 VQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG--ALTQ--HIPVLVPGIIFS 483 (1230)
T ss_dssp C------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--TTGG--GHHHHHHHHHHH
T ss_pred ccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh--hhHH--HHHHHHHHHHHH
Confidence 11122233466777888889888888999999999998875332 1111 123577788888
Q ss_pred hhccCc--ccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhc---CCcc
Q 000184 796 LESASG--SVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCR---DQPA 870 (1890)
Q Consensus 796 l~~~~~--~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~---~~~~ 870 (1890)
|.+... .+. ..++..+..+.+.... . ...--.+..++.|.+++.+.+..++..|..++..+.. +...
T Consensus 484 L~d~~~~~~v~-~~a~~~l~~~~~~~~~-----~--~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~ 555 (1230)
T 1u6g_C 484 LNDKSSSSNLK-IDALSCLYVILCNHSP-----Q--VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555 (1230)
T ss_dssp TTCSSSCHHHH-HHHHHHHHHHHHSSCG-----G--GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred HcCCCCcchHH-HHHHHHHHHHHHhCCH-----H--HHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCccc
Confidence 887654 555 8888888888765432 0 1111235678888999999999888888887766631 1000
Q ss_pred chhhhhccCccchHHHHHHHh--hcCCCceeecchhHHHHHhhhchhhHHHhhhccccchhhHHHHHHHHHhhcCCCCcC
Q 000184 871 VLGDEVTGASGCISSIARRVI--SCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRN 948 (1890)
Q Consensus 871 ~~g~~i~~~~~~~~~~~~~~l--~s~~~~~r~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~~ 948 (1890)
..+..+..--.-....+...+ .+.++++|..+.+.+..+++.-. +.+ ....+..++.|.+.+.+.
T Consensus 556 ~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g----~~~--~~~~~~~l~~L~~~l~~e------- 622 (1230)
T 1u6g_C 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG----DNL--GSDLPNTLQIFLERLKNE------- 622 (1230)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG----GGC--CTHHHHHHHHHHHHTTSS-------
T ss_pred ccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC----chh--hhhHHHHHHHHHHHhccc-------
Confidence 000000000001122233444 45667888888888888775521 111 112233333333333211
Q ss_pred CCCChhHHHHHhhhhhhcccCCCCCCCCcccccCchhHHHHHHHHhccCCccchhhhhccchhhhhhhhhhccccccccc
Q 000184 949 QGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMD 1028 (1890)
Q Consensus 949 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1028 (1890)
..+..++.++..++.. .
T Consensus 623 --~~r~~~~~al~~i~~~----~--------------------------------------------------------- 639 (1230)
T 1u6g_C 623 --ITRLTTVKALTLIAGS----P--------------------------------------------------------- 639 (1230)
T ss_dssp --SHHHHHHHHHHHHTTC----S---------------------------------------------------------
T ss_pred --hhHHHHHHHHHHHHhC----c---------------------------------------------------------
Confidence 1122233333221110 0
Q ss_pred cccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHHhhcchhHHhHHhHHHHHHHHHhcCCCcchhhhccccchhhhH
Q 000184 1029 YKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLI 1108 (1890)
Q Consensus 1029 ~~~~~~~~~~~~~~a~~~~d~~v~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1890)
.+.+-..|+. ..+|.|...+++++...|..++.++....-......
T Consensus 640 ~~~~~~~~~~--------------------~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~-------------- 685 (1230)
T 1u6g_C 640 LKIDLRPVLG--------------------EGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL-------------- 685 (1230)
T ss_dssp SCCCCHHHHH--------------------HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC--------------
T ss_pred cccchHHHHH--------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC--------------
Confidence 0001122322 455666666776666666666555555432211100
Q ss_pred HhhcccccchhhHHhhhHhhhhccCCcHHHHHhhhhhcccccCccccccHHHHHHhcCCC--CCCCCchHHHHHHHHHHh
Q 000184 1109 SLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPI--PDRPGAPFLALGFLIQLA 1186 (1890)
Q Consensus 1109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~~A~~~L~~la 1186 (1890)
....+..++..+.+. .+.......+...|+.+.
T Consensus 686 ---------------------------------------------~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~ 720 (1230)
T 1u6g_C 686 ---------------------------------------------TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLA 720 (1230)
T ss_dssp ---------------------------------------------CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHT
T ss_pred ---------------------------------------------CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHH
Confidence 000000001000000 000111134455555565
Q ss_pred hcCccchhHHHhcCcHHHHHHHHhcCCcchhHHHHHHHHHHhhcCHHHHHhhhhc----CcHHHHHHHHhcC--------
Q 000184 1187 KDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAF----AAVSQLVAVLRLG-------- 1254 (1890)
Q Consensus 1187 ~~~~~~r~~i~eag~l~~Lv~~L~~~~~~~q~~a~~~ll~~l~~~~~~~~~~~~~----g~i~~Lv~lL~~~-------- 1254 (1890)
...+..-.. .-...++.++..+.++. .+..+...++.... .+... ..++.++..|-..
T Consensus 721 ~~~~~~~~~-~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~-------~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 790 (1230)
T 1u6g_C 721 KVYPSSLSK-ISGSILNELIGLVRSPL--LQGGALSAMLDFFQ-------ALVVTGTNNLGYMDLLRMLTGPVYSQSTAL 790 (1230)
T ss_dssp TSCGGGGGG-TTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHH-------HHHTTCCTTCSHHHHHHHHSTTTTTC----
T ss_pred HhCchhHHH-hHHhHHHHHHHHHcCcc--cchHHHHHHHHHHH-------HHHhcCCCCCCHHHHHHHHhccccCCCCcc
Confidence 444321110 12356888888887652 23444444443221 12222 2466666666321
Q ss_pred -ChhHHHHHHHHHHHhhcc--chhhhhhhhcCChHHHHHHhcc--CChHHHHHHHHHHHHHhccCchhhHHHHhhhCChH
Q 000184 1255 -GRGARYSAAKALESLFSA--DHIRNAESARQAVQPLVEILNT--GLEREQHAAIAALVRLLSENPSRALAVADVEMNAV 1329 (1890)
Q Consensus 1255 -~~~~r~~Aa~aL~~L~~~--~~~r~~i~~~~~i~~Lv~lL~~--~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v 1329 (1890)
+...+..++++++.+... +..+ ..++.++..+++ ..+..+..++.+|+.++...+-.. .....
T Consensus 791 ~~~~~~~~~a~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~------~~~l~ 858 (1230)
T 1u6g_C 791 THKQSYYSIAKCVAALTRACPKEGP------AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG------QLELK 858 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHHHSCCCSH------HHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS------CTHHH
T ss_pred ccchhhHHHHHHHHHHHHhcchhhH------HHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcc------cccHH
Confidence 234566777777776541 1111 223444445543 244455667788888764111100 01245
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc--C-CchHHHHH
Q 000184 1330 DVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV--D-DEQLAELV 1406 (1890)
Q Consensus 1330 ~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~--~-~~~~~~~~ 1406 (1890)
+.+++.+.+ +++.++..|+.+++.++.. .-...++.+...+.++ +..|+..+.+|..+. . .+.... .
T Consensus 859 ~~~~~~l~~-~~~~Vr~aAa~aLg~l~~~-------~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~-~ 928 (1230)
T 1u6g_C 859 SVILEAFSS-PSEEVKSAASYALGSISVG-------NLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKP-Y 928 (1230)
T ss_dssp HHHHHGGGC-SCHHHHHHHHHHHHHHHHH-------THHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHH-H
T ss_pred HHHHHHhCC-CCHHHHHHHHHHhHHHhcc-------CHHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHh-h
Confidence 677788876 4789999999999988521 1123467788888664 567888888887775 1 111111 1
Q ss_pred HHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccccc
Q 000184 1407 AAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIA 1486 (1890)
Q Consensus 1407 ~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~ 1486 (1890)
....++.|...+.+.+..+|..+..||+.+....+ ...+|.|.+.+.++++.++..+..+++.+.......
T Consensus 929 -~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~--------~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~ 999 (1230)
T 1u6g_C 929 -VENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP--------ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQP 999 (1230)
T ss_dssp -HHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG--------GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCT
T ss_pred -HHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchh
Confidence 12235666666667788899999999999988754 347888888898888777655554443332211100
Q ss_pred CCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCC----------------
Q 000184 1487 KGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSP---------------- 1550 (1890)
Q Consensus 1487 ~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~---------------- 1550 (1890)
....-...+++++..|.+++ +++|..|+.+|..++++......- .-...+|.|+.-+...
T Consensus 1000 ~~~~l~~~~~~ll~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~~~--~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~v 1075 (1230)
T 1u6g_C 1000 IDPLLKNCIGDFLKTLEDPD--LNVRRVALVTFNSAAHNKPSLIRD--LLDTVLPHLYNETKVRKELIREVEMGPFKHTV 1075 (1230)
T ss_dssp HHHHHHHHSTTTHHHHSSSS--THHHHHHHHHHHHHHHHCGGGTGG--GHHHHHHHHHHTTSCCGGGEEEEEETTEEEEE
T ss_pred hHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhcChHhHHH--HHHHHHHHHHHHhcccHHhheeeccCCccccc
Confidence 00011234567778888877 999999999999887654322211 1234677776665433
Q ss_pred --CHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHH
Q 000184 1551 --APAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIA 1615 (1890)
Q Consensus 1551 --~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~ 1615 (1890)
.-++|+.|..++..+...... .+.-...++..+.-|.++ .+++..+...|.++....|..+.
T Consensus 1076 d~~l~~rk~a~~~~~~ll~~~~~--~i~~~~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~~~~~~ 1139 (1230)
T 1u6g_C 1076 DDGLDIRKAAFECMYTLLDSCLD--RLDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVL 1139 (1230)
T ss_dssp ETHHHHHHHHHHHHHHHHHSSCS--SSCHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSCCHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHcccCch-HHHHHHHHHHHHHHHhcCHHHHH
Confidence 238999999999999874211 121223445566666664 89999999999999987766544
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.89 E-value=1.6e-21 Score=228.30 Aligned_cols=241 Identities=24% Similarity=0.285 Sum_probs=219.9
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 000184 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 532 (1890)
Q Consensus 453 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~ 532 (1890)
|+++.|+++|++++++++..|+++|.+++...++++..+.+.|+++.|+++|.++++.+++.++++|++++.++++.+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 67999999999999999999999999999877789999999999999999999999999999999999999987999999
Q ss_pred HHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhh
Q 000184 533 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 612 (1890)
Q Consensus 533 i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 612 (1890)
+.+.|+++.|+.+++++++.++..|+++|++|+.+.+. .+..+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-------------------------------------~~~~~ 124 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-------------------------------------AIKAI 124 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-------------------------------------HHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-------------------------------------HHHHH
Confidence 99999999999999999999999999999999863321 12234
Q ss_pred hhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchh
Q 000184 613 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 692 (1890)
Q Consensus 613 ~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 692 (1890)
.+.++++.|+++++++++.++..++++|++++.++++.+..+...|++|.|+.++.++++.++..++.+|.+++.+.+ .
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 203 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-S 203 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-H
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-H
Confidence 457889999999999999999999999999999888887889999999999999999999999999999999987654 4
Q ss_pred hHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Q 000184 693 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 731 (1890)
Q Consensus 693 ~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~ 731 (1890)
.+..+.+.|+++.|++++.++++++++.|+++|+||...
T Consensus 204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 455588999999999999999999999999999999843
No 32
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.88 E-value=2e-19 Score=259.09 Aligned_cols=1045 Identities=12% Similarity=0.078 Sum_probs=579.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHH
Q 000184 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 491 (1890)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i 491 (1890)
.++.++.-+.++|+++|..|...|.+....+......-.....++.|++.+.++++.+|..|+.+|++++...++. .+
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~ 84 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV 84 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH
Confidence 3566777788999999999999998865432110000001145788999999999999999999999998644331 11
Q ss_pred HhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHH------HHHHHhCCCHHHHHHHhh-cCChhHHHHHHHHHHHH
Q 000184 492 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI------RACVESADAVPALLWLLK-NGSANGKEIAAKTLNHL 564 (1890)
Q Consensus 492 ~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~------r~~i~~~g~i~~Lv~ll~-~~~~~~~~~Aa~aL~~L 564 (1890)
...++.|+..+.++++.+|..|+.+|..++...... .... -...+|.|+..+. +.++.++..|..+|..+
T Consensus 85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 236778888888888899999999999998643221 0111 1246788888887 46777888888888877
Q ss_pred hcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000184 565 IHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 644 (1890)
Q Consensus 565 ~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~ 644 (1890)
+....... .+ . . ...++.|...+.++++.+|..|+.+|..++
T Consensus 162 ~~~~~~~l-----------------------------~~--~-~------~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 162 LSRQGGLL-----------------------------VN--F-H------PSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp HHHTCSSC-----------------------------TT--T-H------HHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHhHhHH-----------------------------HH--H-H------HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 65321100 00 0 0 123677888888889999999999999999
Q ss_pred hcChhHHHHHHHcCchHHHHHhhcCCC-HHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHH
Q 000184 645 ETRKDLRESSIAVKTLWSVMKLLDVGS-ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATC 723 (1890)
Q Consensus 645 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~ 723 (1890)
...++. + ....++.++..+...+ ..++..++.++..++...+.... ..-...++.++..+.+.++++|+.+..
T Consensus 204 ~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~--~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 204 MSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG--EYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp TTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT--TSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 765432 1 3346888888875432 34667788888888765433111 123567889999999999999999999
Q ss_pred HHHHHhcC--chHHHHHHhcCcHHHHHHHHhc-------------------------------------CCcchHHHHHH
Q 000184 724 ALANLILD--SEVSEKAIAEEIILPATRVLCE-------------------------------------GTISGKTLAAA 764 (1890)
Q Consensus 724 aL~nL~~~--~~~~~~~~~~~~v~~L~~ll~~-------------------------------------~~~~~~~~aa~ 764 (1890)
++..++.. ++.. .+ -..+++.+++.+.+ ...++|+.|+.
T Consensus 278 ~l~~l~~~~~~~~~-~~-l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~ 355 (1230)
T 1u6g_C 278 AFESFVRRCPKEVY-PH-VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 355 (1230)
T ss_dssp HHHHHHHCTTCCCH-HH-HHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHH
T ss_pred HHHHHHHHChHHHH-Hh-HHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHH
Confidence 99998732 2211 11 12333333333321 01236888999
Q ss_pred HHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCCC--C-C--------CCccceee
Q 000184 765 AIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASG--H-V--------KPAWQVLA 833 (1890)
Q Consensus 765 aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~~--~-~--------~~~~~~~~ 833 (1890)
+|..+....+. .+.. .....++.++..+++++..+. ..++.+|..+++...... . . .+...+..
T Consensus 356 ~l~~l~~~~~~--~~~~--~~~~l~~~l~~~l~d~~~~Vr-~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1230)
T 1u6g_C 356 CLDAVVSTRHE--MLPE--FYKTVSPALISRFKEREENVK-ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 430 (1230)
T ss_dssp HHHHHHTTCCT--THHH--HHTTTHHHHHSTTSCSSSHHH-HHHHHHHHHHHHHHCCC------------CCCHHHHHHH
T ss_pred HHHHHHHhchh--HHHH--HHHHHHHHHHHHcCCCchHHH-HHHHHHHHHHHHHhccccccccCccccccccchHHHHHH
Confidence 99988864332 1222 123567778888887777777 888888888876432100 0 0 00011122
Q ss_pred cCCCChhhHHhHhhcCChhHHHHHHHHHHHHhcCCccchhhhhccCccchHHHHHHHhhcCCCceeecchhHHHHHhhhc
Q 000184 834 EFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVN 913 (1890)
Q Consensus 834 ~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~g~~i~~~~~~~~~~~~~~l~s~~~~~r~~~~~~~~~~a~~~ 913 (1890)
..+..++.+.+.+.+.++.++..+..+|..+.. .-
T Consensus 431 ~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~---------------------------------------------~~ 465 (1230)
T 1u6g_C 431 QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN---------------------------------------------VL 465 (1230)
T ss_dssp HTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---------------------------------------------HS
T ss_pred HhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHH---------------------------------------------Hc
Confidence 334445555555666666666666666655411 00
Q ss_pred hhhHHHhhhccccchhhHHHHHHHHHhhcCCCCcCCCCChhHHHHHhhhhhhcccCCCCCCCCcccccCchhHHHHHHHH
Q 000184 914 HQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVL 993 (1890)
Q Consensus 914 ~~~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 993 (1890)
...+ ..+....++.+.++|..... ......+++..+..+.+. +.......+++..++.++.++.
T Consensus 466 ----~~~l--~~~l~~ll~~l~~~L~d~~~-----~~~v~~~a~~~l~~~~~~-----~~~~~~~~~l~~llp~L~~~l~ 529 (1230)
T 1u6g_C 466 ----PGAL--TQHIPVLVPGIIFSLNDKSS-----SSNLKIDALSCLYVILCN-----HSPQVFHPHVQALVPPVVACVG 529 (1230)
T ss_dssp ----TTTT--GGGHHHHHHHHHHHTTCSSS-----CHHHHHHHHHHHHHHHHS-----SCGGGGHHHHTTTHHHHHHHHT
T ss_pred ----hhhh--HHHHHHHHHHHHHHHcCCCC-----cchHHHHHHHHHHHHHHh-----CCHHHHHhHHHHHHHHHHHHHc
Confidence 0000 12345566777777764431 112355666666643321 1111112235566677766554
Q ss_pred hccCCccchhhhhccchhhhhhhhhhccccccccccccCchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHHhh--cch
Q 000184 994 ACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLL--KSE 1071 (1890)
Q Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~d~~v~~~~~~~~~i~~l~~~~--~~~ 1071 (1890)
+..+ ++. ..+++.+.+.+..+-.. . ...+.. ..|-....+|.+...+ .|+
T Consensus 530 d~~~---~v~---~~al~~l~~l~~~~~~~-~-~~~~~~--------------------~~~~~~~ll~~ll~~l~~~d~ 581 (1230)
T 1u6g_C 530 DPFY---KIT---SEALLVTQQLVKVIRPL-D-QPSSFD--------------------ATPYIKDLFTCTIKRLKAADI 581 (1230)
T ss_dssp CSSH---HHH---HHHHHHHHHHHHHHCCS-S-SCCCCC--------------------CHHHHHHHHHHHHHHHSCSSS
T ss_pred ccch---HHH---HHHHHHHHHHHHHhcCc-c-cccccc--------------------hHHHHHHHHHHHHHHHhccCC
Confidence 4221 121 12333343333222000 0 000000 0111124455554445 344
Q ss_pred hHHhHHhHHHHHHHHHhcCCCcchhhhccccchhhhHHhhcccccchhhHHhhhHhhhhccCCcHHHHHhhhhhcccccC
Q 000184 1072 ESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVG 1151 (1890)
Q Consensus 1072 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1151 (1890)
+...|.-|+.++..++... |. .. .
T Consensus 582 ~~~vr~~a~~~lg~L~~~~---------------------g~----------------------------------~~-~ 605 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICNL---------------------GD----------------------------------NL-G 605 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHT---------------------GG----------------------------------GC-C
T ss_pred CHHHHHHHHHHHHHHHHHh---------------------Cc----------------------------------hh-h
Confidence 4444444444443332110 00 00 0
Q ss_pred ccccccHHHHHHhcCCCCCCCCchHHHHHHHHHHhhcCccchhHHHhcCcHHHHHHHHhcCCcchhHHHHHHHHHHhhcC
Q 000184 1152 ATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTKYLSLGPQDATEEAATDLLGILFSS 1231 (1890)
Q Consensus 1152 ~~~~~~i~~Lv~~L~~~~~~~~~~~~A~~~L~~la~~~~~~r~~i~eag~l~~Lv~~L~~~~~~~q~~a~~~ll~~l~~~ 1231 (1890)
......++.|.+.++.. ..+..+++.+..++......-..-.-...++.|...+.+.+...+..++..+..++...
T Consensus 606 ~~~~~~l~~L~~~l~~e----~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 606 SDLPNTLQIFLERLKNE----ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp THHHHHHHHHHHHTTSS----SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhccc----hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 01122334444444322 12356677777776421110111122446788888888776667777777766654422
Q ss_pred HHHHHhhhhcCcHHHHH----HHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHH
Q 000184 1232 AEIRRHESAFAAVSQLV----AVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAAL 1307 (1890)
Q Consensus 1232 ~~~~~~~~~~g~i~~Lv----~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL 1307 (1890)
+... ....+.+++ .++.+.+...+..+..+|..+......-..-.....++.++.++++..-.. .+..++
T Consensus 682 ~~~~----~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~~~~~l 755 (1230)
T 1u6g_C 682 SDSL----TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQG--GALSAM 755 (1230)
T ss_dssp CTTC----CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCH--HHHHHH
T ss_pred cccC----CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccch--HHHHHH
Confidence 2100 011222222 223345556666777777777653221111123567899999988754221 122233
Q ss_pred HH----HhccCchhhHHHHhhhCChHHHHHHHHhhc--------CChhhHHHHHHHHHHhhCC--hhhHHHHHhhCchHH
Q 000184 1308 VR----LLSENPSRALAVADVEMNAVDVLCRILSSN--------CSMELKGDAAELCGVLFGN--TRIRSTVAAARCVEP 1373 (1890)
Q Consensus 1308 ~~----L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~--------~~~~~~~~a~~~l~~L~~~--~~~~~~~~~~~~i~~ 1373 (1890)
.. +...++. ....+.++..+-.. ..+.+...+++.++.+... +... ..++.
T Consensus 756 ~~~~~~l~~~~~~---------~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~------~~~~~ 820 (1230)
T 1u6g_C 756 LDFFQALVVTGTN---------NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP------AVVGQ 820 (1230)
T ss_dssp HHHHHHHHTTCCT---------TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH------HHHTT
T ss_pred HHHHHHHHhcCCC---------CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH------HHHHH
Confidence 22 2221110 01234444443211 1223455666777665321 1111 12333
Q ss_pred HHHHHcc--CChHHHHHHHHHHHhccC--CchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHH
Q 000184 1374 LVSLLVT--EFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMV 1449 (1890)
Q Consensus 1374 Lv~lL~~--~~~~~~~~a~~aL~~L~~--~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~ 1449 (1890)
++..+.+ .++..+..++.+|+.++. +-... ...++.+...+.+.++.+|.+|..||+.++..+.. .
T Consensus 821 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~-----~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~---~-- 890 (1230)
T 1u6g_C 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQ-----LELKSVILEAFSSPSEEVKSAASYALGSISVGNLP---E-- 890 (1230)
T ss_dssp TTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSC-----THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHH---H--
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHhcccCCCccc-----ccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHH---H--
Confidence 3334443 345666667677776541 10000 11357788899999999999999999999854321 1
Q ss_pred HcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccc-cCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCc
Q 000184 1450 KAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGI-AKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQC 1528 (1890)
Q Consensus 1450 ~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~-~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~ 1528 (1890)
.+|.+++.+.+++ ..+.....+++........ .-.+......+.|++.+.+.+ ..++..+..+|+.+...
T Consensus 891 ---~lp~ll~~l~~~~-~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~--~~~r~~~a~~lg~l~~~--- 961 (1230)
T 1u6g_C 891 ---YLPFVLQEITSQP-KRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAE--EGTRNVVAECLGKLTLI--- 961 (1230)
T ss_dssp ---HHHHHHHHHHSCG-GGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSS--TTHHHHHHHHHHHHHHS---
T ss_pred ---HHHHHHHHHhccc-hhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcc--hhhHHHHHHHHhhhhcc---
Confidence 4688888887653 3455555566555433211 100111223334444444444 56787889999998654
Q ss_pred ccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhccc--ccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000184 1529 RADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEE--QLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSI 1606 (1890)
Q Consensus 1529 ~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~--~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l 1606 (1890)
.....+|.|...++++++.+|..++.++..+..+. .+... -...+++|++.|++.++++|..|+.+|..+
T Consensus 962 ------~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~--l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~ 1033 (1230)
T 1u6g_C 962 ------DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPL--LKNCIGDFLKTLEDPDLNVRRVALVTFNSA 1033 (1230)
T ss_dssp ------SGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHH--HHHHSTTTHHHHSSSSTHHHHHHHHHHHHH
T ss_pred ------ChHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHH--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 23457899999999999999988888887765421 11100 112346777888999999999999999999
Q ss_pred hccChhHHHhhcChHHHHHHHhhcC----CC--------C------cHHHHHHHHHHHHhhhhhchhhh-cccchHHHHH
Q 000184 1607 ALTWPNEIAKEGGVTELSKIILQAD----PS--------L------PHALWESAASVLSSILQFSSEFY-LEVPVAVLVR 1667 (1890)
Q Consensus 1607 ~~~~~~~l~~~g~I~~Ll~~l~~~~----~~--------~------~~~~~~~a~~~l~~~~~~~~~~~-~~~~v~~Lv~ 1667 (1890)
+...+..+..+ ++.++..+.... +. . ...+.+.|...+..+........ ..+-++..+.
T Consensus 1034 ~~~~~~~~~~~--l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~ 1111 (1230)
T 1u6g_C 1034 AHNKPSLIRDL--LDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVED 1111 (1230)
T ss_dssp HHHCGGGTGGG--HHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHH
T ss_pred HhcChHhHHHH--HHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 87766543222 344444443211 10 0 01455556666666654432211 1123455666
Q ss_pred hhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHcc
Q 000184 1668 LLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRS 1713 (1890)
Q Consensus 1668 ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~ 1713 (1890)
-|.+ +.+++.-+-..|..|...++..-..- =...+++|-..|..
T Consensus 1112 gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~l~~ 1155 (1230)
T 1u6g_C 1112 GLKD-HYDIKMLTFLMLVRLSTLCPSAVLQR-LDRLVEPLRATCTT 1155 (1230)
T ss_dssp TTSS-CHHHHHHHHHHHHHHHHSCCHHHHTT-TTTTHHHHHHHHHC
T ss_pred ccCc-hHHHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHHhh
Confidence 6666 48899999999999988776544311 12567888888755
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.87 E-value=2.7e-21 Score=226.39 Aligned_cols=240 Identities=19% Similarity=0.213 Sum_probs=215.9
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHH
Q 000184 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1890)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 490 (1890)
...+.++.+|+++++++|..|+++|.++...+...+..+.+.|+++.|+++|++++++++..|+++|.+++.++++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 46788999999999999999999998866656677888999999999999999999999999999999999878999999
Q ss_pred HHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC
Q 000184 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT 570 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~ 570 (1890)
+.+.|+++.|+++|.++++.+++.|+++|+||+...+.....+.+.|+++.|+++++++++.++..|+++|++|+.+.+.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999999999999999986443338889999999999999999999999999999999874321
Q ss_pred CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhH
Q 000184 571 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 650 (1890)
Q Consensus 571 ~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~ 650 (1890)
....+.+.++++.|++++.++++.++..|+++|++++..+++.
T Consensus 172 -------------------------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 172 -------------------------------------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp -------------------------------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred -------------------------------------HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 1123345788999999999999999999999999999888888
Q ss_pred HHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHc
Q 000184 651 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 687 (1890)
Q Consensus 651 ~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 687 (1890)
+..+.+.|+++.|+.++.++++.++..|+.+|.+|+.
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999999864
No 34
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.87 E-value=2.4e-19 Score=248.13 Aligned_cols=748 Identities=13% Similarity=0.069 Sum_probs=474.7
Q ss_pred hhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhh---cCCHHHHHHHHHHHHHhh
Q 000184 17 GTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR---SGSLAVKIQAATVLGSLC 93 (1890)
Q Consensus 17 ~~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~---~~~~~~~~~aa~~L~~L~ 93 (1890)
....++.++++...+. +...|..|-..|..+...+ +..+.|..++. +.++.+|..|+..|.+..
T Consensus 10 ~~~~~l~~~l~~~~s~--d~~~r~~Ae~~L~~~~~~p-----------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i 76 (852)
T 4fdd_A 10 QGLQQILQLLKESQSP--DTTIQRTVQQKLEQLNQYP-----------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNV 76 (852)
T ss_dssp HHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSH-----------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHhCc--CHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 4566777777776654 5567888888887654432 33445555554 567799999999999876
Q ss_pred ccchhh-HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHH
Q 000184 94 KENELR-VKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDN 172 (1890)
Q Consensus 94 ~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~ 172 (1890)
+..-.. ..-.+...-+.++..|.+++..+|..++.++..+.....++ .-...+|.|++.+.+ .++.++.
T Consensus 77 ~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~-------~wp~ll~~L~~~l~~---~~~~~r~ 146 (852)
T 4fdd_A 77 KAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ-------NWPDLLPKLCSLLDS---EDYNTCE 146 (852)
T ss_dssp TTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT-------TCTTHHHHHHHHHSC---SSHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc-------ccHHHHHHHHHHHcC---CCHHHHH
Confidence 432110 00011122345677788888999999999999988732111 123467788887765 3456777
Q ss_pred HHHHHHHHhccCChhHHHH-H---HhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHc
Q 000184 173 LLTGALRNLSTSTEGFWAA-T---VQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLG 248 (1890)
Q Consensus 173 ~~~~~L~~L~~~~~~~~~~-i---~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~ 248 (1890)
.++.+|..++...+..... . .-...++.++++++++++++|..|+.+|..+....+..... .-...++.+++++.
T Consensus 147 ~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~ 225 (852)
T 4fdd_A 147 GAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAG 225 (852)
T ss_dssp HHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcC
Confidence 8888999988543222110 0 01235778888889999999999999997666443321111 11356788888887
Q ss_pred CCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhh
Q 000184 249 SGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSL 328 (1890)
Q Consensus 249 ~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l 328 (1890)
++ +.++|..++++|..++...++.-....+ +.++.++..+.+. +..++..|+..+..++.... ....+
T Consensus 226 d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~---------~~~vr~~a~e~l~~l~~~~~-~~~~~ 293 (852)
T 4fdd_A 226 DE-EPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQ---------DENVALEACEFWLTLAEQPI-CKDVL 293 (852)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCS---------SHHHHHHHHHHHHHHTTSTT-HHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCC---------cHHHHHHHHHHHHHHhcchh-HHHHH
Confidence 64 6789999999999999866542111111 3456666666553 37789999999988875210 00000
Q ss_pred hccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcC----------CC-----------CChHHH
Q 000184 329 GQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFK----------PR-----------LPFLVQ 387 (1890)
Q Consensus 329 ~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~----------~~-----------~~~~~~ 387 (1890)
. ..+. .+.+.+++.+. .. ....++
T Consensus 294 -------------~---~~~~-------------------~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr 338 (852)
T 4fdd_A 294 -------------V---RHLP-------------------KLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLR 338 (852)
T ss_dssp -------------T---TTHH-------------------HHHHHHHHHTSCCHHHHHHHHC------------CCCCHH
T ss_pred -------------H---HHHH-------------------HHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHH
Confidence 0 0001 12223333321 11 123368
Q ss_pred HHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCH
Q 000184 388 ERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSE 467 (1890)
Q Consensus 388 ~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 467 (1890)
..++.+|..++.... ..+. ...++.+...++++++.+|+.|+.+|.+++......... .-.+.++.++.+++++++
T Consensus 339 ~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~ 414 (852)
T 4fdd_A 339 KCSAAALDVLANVYR--DELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKA 414 (852)
T ss_dssp HHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCH
Confidence 888889888854321 1111 246677888888999999999999999998764431111 123568999999999999
Q ss_pred HHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChH-HHHHHHhCCCHHHHHHHh
Q 000184 468 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED-IRACVESADAVPALLWLL 546 (1890)
Q Consensus 468 ~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~-~r~~i~~~g~i~~Lv~ll 546 (1890)
.++..++++|++++...........-.+.++.|++.+.++++.+|+.|+++|.+++..... ....+ .+.++.|+.++
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l 492 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAF 492 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHH
Confidence 9999999999999852211100111234678888999889999999999999999863211 11111 35678888888
Q ss_pred hcCChhHHHHHHHHHHHHhcCCC-----CCcH----HHHHH---HHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhh
Q 000184 547 KNGSANGKEIAAKTLNHLIHKSD-----TATI----SQLTA---LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAA 614 (1890)
Q Consensus 547 ~~~~~~~~~~Aa~aL~~L~~~~~-----~~~i----~~L~~---lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~ 614 (1890)
++...+....+..+++.++.... +..+ +.++. .+.+.+++. ..+.++++.+.......- .. . -
T Consensus 493 ~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~-~~-~--~ 567 (852)
T 4fdd_A 493 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGF-LP-Y--C 567 (852)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGG-HH-H--H
T ss_pred HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhH-HH-H--H
Confidence 87777766667777777764222 1122 33332 234555555 367888887765332211 00 0 0
Q ss_pred cchHHHHHHHhc-----------------CCCHHHHHHHHHHHHHHhhcCh-hHHHHHHHcCchHHHHHhhcCCCHHHHH
Q 000184 615 NDAVETMIKILS-----------------STKEETQAKSASALAGIFETRK-DLRESSIAVKTLWSVMKLLDVGSECILV 676 (1890)
Q Consensus 615 ~~~i~~Lv~lL~-----------------s~~~~~~~~A~~aL~~L~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~~~v~~ 676 (1890)
...++.++.+++ .++.+.+..+..++..++..-+ +....+...+.++.+...+.+.++.++.
T Consensus 568 ~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~ 647 (852)
T 4fdd_A 568 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQ 647 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHH
Confidence 112333333332 2356788899999999987533 3333344578899999999888899999
Q ss_pred HHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCc
Q 000184 677 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTI 756 (1890)
Q Consensus 677 ~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~ 756 (1890)
.+..+++.++...+..... .. ...++.+++.+.....+++..|+|+++.++..-+...+..-..+++.|++++++.+.
T Consensus 648 ~a~~~l~~l~~~~~~~~~~-~l-~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~ 725 (852)
T 4fdd_A 648 SSFALLGDLTKACFQHVKP-CI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT 725 (852)
T ss_dssp HHHHHHHHHHHHCGGGTGG-GH-HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHhhHHHHH-HH-HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999998655432222 11 236778888888888999999999999987322212222346889999999987643
Q ss_pred --chHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCCCCCCCccceeec
Q 000184 757 --SGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAE 834 (1890)
Q Consensus 757 --~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~ 834 (1890)
.++++++.++.++....+. .+.. .-...++..++.|...++..-...++..|-.+.+..+..-
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~--~~~~--~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~----------- 790 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQ--EVAP--MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV----------- 790 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHH--HHGG--GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGT-----------
T ss_pred CchHHHHHHHHHHHHHHhCHH--HhCc--cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhH-----------
Confidence 4899999999999976432 1111 1124677788888764433334888888888887765410
Q ss_pred CCCChhhHHhHhh---cCChhHHHHHHHHHHHH
Q 000184 835 FPKSITPIVSSIA---DATPLLQDKAIEILSRL 864 (1890)
Q Consensus 835 ~~~~l~~l~~~l~---~~~~~~~~~a~~~L~~l 864 (1890)
...+.-+...++ +.++.+++.-.++|..|
T Consensus 791 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 822 (852)
T 4fdd_A 791 -IQDFIFFCDAVASWINPKDDLRDMFCKILHGF 822 (852)
T ss_dssp -GGGHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 011111222333 33567888777888776
No 35
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.87 E-value=4.1e-21 Score=224.88 Aligned_cols=240 Identities=22% Similarity=0.240 Sum_probs=216.2
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 000184 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 532 (1890)
Q Consensus 453 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~ 532 (1890)
...+.++..|++++++++..|+++|+++...+++++..+.+.|+++.|+++|.++++.++..|+++|++++..+++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45899999999999999999999998766556778899999999999999999999999999999999999988999999
Q ss_pred HHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhh
Q 000184 533 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 612 (1890)
Q Consensus 533 i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 612 (1890)
+.+.|+++.|+++++++++.+++.|+++|+||+.+.+. ....+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------------------------------~~~~~ 134 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-------------------------------------QIQAV 134 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-------------------------------------HHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch-------------------------------------HHHHH
Confidence 99999999999999999999999999999999764321 11234
Q ss_pred hhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchh
Q 000184 613 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 692 (1890)
Q Consensus 613 ~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 692 (1890)
...++++.|+++|+++++.++..|+++|++++.++++.+..+...|++|.|+.++.++++.++..++.+|.+++.+.+ .
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~ 213 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-E 213 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH-H
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH-H
Confidence 567899999999999999999999999999999888888888999999999999999999999999999999987654 4
Q ss_pred hHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc
Q 000184 693 REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 730 (1890)
Q Consensus 693 ~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~ 730 (1890)
.+..+.+.|+++.|++++.++++++++.|+++|+||+.
T Consensus 214 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 214 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 55558899999999999999999999999999999863
No 36
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.84 E-value=5.8e-19 Score=234.25 Aligned_cols=569 Identities=14% Similarity=0.090 Sum_probs=376.2
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhh-cCHHHHHhhhhcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhh
Q 000184 1202 LEALTKYLSLGPQDATEEAATDLLGILF-SSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAES 1280 (1890)
Q Consensus 1202 l~~Lv~~L~~~~~~~q~~a~~~ll~~l~-~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~ 1280 (1890)
+..|+..|.+++...+..|+..+..+.. ..++.. ....++.|...+ +.+..+|..++.+|+.+...-... -.
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~----~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~ 84 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERT----RSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EY 84 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHH----HHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GG
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHH----HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HH
Confidence 7788899998877777777666554322 112111 113455555444 567789999999998776521110 11
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChh
Q 000184 1281 ARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTR 1360 (1890)
Q Consensus 1281 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~ 1360 (1890)
....++.|..++.+.+..+|..|+.+|.+++...+... +....++.+.++..+ ++..++..+..+++.++..-.
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~-----~~~~l~~~l~~l~~~-~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-----LEAHFVPLVKRLAGG-DWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH-----HHHTHHHHHHHHHTC-SSHHHHHHHGGGHHHHTTTSC
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhcC
Confidence 23456777778888889999999999999997544322 123455656666654 466788888888888866533
Q ss_pred hHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccC
Q 000184 1361 IRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKD 1440 (1890)
Q Consensus 1361 ~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 1440 (1890)
.. .....++.+..++.++++.+|..++.+|+.++..-... ......++.|..++++++..+|..|+.+|+.++..
T Consensus 159 ~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 159 SA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp HH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 11 23345677778889999999999999999998211110 11245678889999999999999999999998865
Q ss_pred ChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHH
Q 000184 1441 RPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLV 1520 (1890)
Q Consensus 1441 ~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~ 1520 (1890)
.+. ......+++.+.+++.+++..++..++.+++.+....... ......++.++.++.+++ +.+|..+..+|.
T Consensus 234 ~~~---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~ 306 (588)
T 1b3u_A 234 LPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCE--AEVRAAASHKVK 306 (588)
T ss_dssp SCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSS--HHHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCc--HHHHHHHHHHHH
Confidence 322 1123347888888888888889999999999887643211 112356889999999877 999999999999
Q ss_pred HhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHH
Q 000184 1521 NILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAV 1600 (1890)
Q Consensus 1521 nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~ 1600 (1890)
.+.................++.+..+++++++.+|..++++|+.++..- .+.......++.+..+++++++++|..++
T Consensus 307 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~ 384 (588)
T 1b3u_A 307 EFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL--GKDNTIEHLLPLFLAQLKDECPEVRLNII 384 (588)
T ss_dssp HHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH--CHHHHHHHTHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--hHhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9976532211000023456888889999999999999999999887521 11111234678889999999999999999
Q ss_pred HHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhh-chhhhcccchHHHHHhhccCChhHHHH
Q 000184 1601 KALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQF-SSEFYLEVPVAVLVRLLRSGSEGTVIG 1679 (1890)
Q Consensus 1601 ~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~-~~~~~~~~~v~~Lv~ll~~~~~~v~~~ 1679 (1890)
.++..+.............++.+.+.+.+.++.+|..+.+ .+..+... ...++...-+|.+.++++++++.+|+.
T Consensus 385 ~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~----~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 385 SNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIE----YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp TTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH----HHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHH----HHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999987643332222345677777776655545544444 44443321 112333346889999999999999999
Q ss_pred HHHHHHHhhcCChhhHHHHHHcccHHHHHHHHccC--CcHHHHHHHHHHHhhchhhhhhhhccccccccccccCChH--H
Q 000184 1680 SLNALLVLESDDGTSAEAMAESGAIEALLELLRSH--QCEETAARLLEVLLNNGKIRESKATKSAILPLSQYLLDPQ--T 1755 (1890)
Q Consensus 1680 a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~--~~~~~a~~al~~L~~~~~~r~~i~~~~~i~~L~~~~~~~~--~ 1755 (1890)
|..++..+....+.. ......++.|+.++.++ ..+..+..++..++.. +.........++.|...+.|+. +
T Consensus 461 a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~l~d~~~~V 535 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--CGQDITTKHMLPTVLRMAGDPVANV 535 (588)
T ss_dssp HHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--HHHHHHHHHTHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhhCCCCCchH
Confidence 999999987532221 12345666677766653 2555666666666441 2222233446667777776654 4
Q ss_pred HHHHHHHHHHHhcchhhhhhhhhhcccccchHHHHHHhhccCCCHHHHHHHHHHHHHhh
Q 000184 1756 QAQQARLLATLALGDLFQNEGLARSADAVSACRALVNVLEEQPTEEMKVVAICALQNLV 1814 (1890)
Q Consensus 1756 ~~~~~~~la~l~~~~~~~~~~l~~~~~~~~~~~~Lv~lL~~~~~~~~r~~A~~aL~~l~ 1814 (1890)
+...+++++.+. ...... .. ....++.|..++.+. +.++|..|++|+..+.
T Consensus 536 r~~a~~~l~~l~--~~~~~~-~~----~~~~~p~l~~l~~d~-d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 536 RFNVAKSLQKIG--PILDNS-TL----QSEVKPILEKLTQDQ-DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHG--GGSCHH-HH----HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--HHhchh-hh----HHHHHHHHHHHcCCC-chhHHHHHHHHHHHhh
Confidence 444444454443 221111 11 124566677777775 9999999999998774
No 37
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.83 E-value=1.2e-18 Score=241.21 Aligned_cols=708 Identities=13% Similarity=0.072 Sum_probs=455.4
Q ss_pred chHHHHHHh---hcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhh---cCCCHHHHHHHHHHHHHHhcCCCC
Q 000184 66 AVPVLVSLL---RSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLL---KSSSAEGQIAAAKTIYAVSQGGAK 139 (1890)
Q Consensus 66 ~v~~Lv~lL---~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~aL~~ls~~~~~ 139 (1890)
.+..|.++| .+++.++|..|-..|..+...++ ..+.|..++ .+.+..+|..|+-.|+|.-...-
T Consensus 11 ~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~---------~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w- 80 (852)
T 4fdd_A 11 GLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPD---------FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF- 80 (852)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHH---------HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSG-
T ss_pred hHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCC---------HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcc-
Confidence 344455555 46788899999888887743332 233444444 46788999999999988654111
Q ss_pred CccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCC-hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHH
Q 000184 140 DYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCF 218 (1890)
Q Consensus 140 ~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~ 218 (1890)
..-..-.+..+-+.+++.+. ..++.++..+..++..++... +..|. +.++.|+..+.+++..++..++.
T Consensus 81 --~~~~~~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~ia~~~~~~~wp-----~ll~~L~~~l~~~~~~~r~~al~ 150 (852)
T 4fdd_A 81 --QNFPNGVTDFIKSECLNNIG---DSSPLIRATVGILITTIASKGELQNWP-----DLLPKLCSLLDSEDYNTCEGAFG 150 (852)
T ss_dssp --GGCCHHHHHHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHHHTTTTTCT-----THHHHHHHHHSCSSHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhcCccccH-----HHHHHHHHHHcCCCHHHHHHHHH
Confidence 10000012222333444443 345678888888888887532 33443 45899999999999999999999
Q ss_pred HHHHHhhcCchhhhH-h---hccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCC
Q 000184 219 LLACMMEEDVSVCSR-V---LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPS 294 (1890)
Q Consensus 219 ~L~~L~~~~~~~~~~-i---~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~ 294 (1890)
+|..++...+..... . .-...++.|++.++++ +.++|..|+++|.++....+..-.. .-.+.++.++.++.++
T Consensus 151 ~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~- 227 (852)
T 4fdd_A 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDE- 227 (852)
T ss_dssp HHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCC-
Confidence 999887543322111 0 0134567777777764 6789999999999887643321100 0013456777766554
Q ss_pred ccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHH
Q 000184 295 KEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTL 374 (1890)
Q Consensus 295 ~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L 374 (1890)
+..++..++.+|.+++...+..... . + ..+.+.+
T Consensus 228 --------~~~vr~~a~~~L~~l~~~~~~~~~~-------------~------l-------------------~~l~~~l 261 (852)
T 4fdd_A 228 --------EPEVRKNVCRALVMLLEVRMDRLLP-------------H------M-------------------HNIVEYM 261 (852)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCHHHHGG-------------G------H-------------------HHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHhCHHHHHH-------------H------H-------------------HHHHHHH
Confidence 3789999999999987522111100 0 0 1244556
Q ss_pred HhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhh--cCcHHHHHHHh-----------cC-----------CCHHHHHH
Q 000184 375 VNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN--SEAKRLLVGLI-----------TM-----------ATNEVQEE 430 (1890)
Q Consensus 375 ~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~--~g~i~~Lv~lL-----------~~-----------~~~~v~~~ 430 (1890)
.+.++.. ++.++..|++.+..++..+..+..+.. ...++.++..+ .+ .++.++..
T Consensus 262 ~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~ 340 (852)
T 4fdd_A 262 LQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKC 340 (852)
T ss_dssp HHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHH
T ss_pred HHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHH
Confidence 6666554 345799999999998776543332211 13456666665 22 23346888
Q ss_pred HHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHH
Q 000184 431 LVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAK 510 (1890)
Q Consensus 431 a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 510 (1890)
+..+|..++...++. +. ...++.+.+++.++++.+|+.|+++|++++.+..+.... .-.+.++.++.++.++++.
T Consensus 341 a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~ 415 (852)
T 4fdd_A 341 SAAALDVLANVYRDE---LL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKAL 415 (852)
T ss_dssp HHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHH
Confidence 999999888653321 11 145788888899999999999999999999654432111 2245789999999999999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC-------CcHHHHHHHHhcC
Q 000184 511 AKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTALLTSD 583 (1890)
Q Consensus 511 ~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~-------~~i~~L~~lL~~~ 583 (1890)
+|..++|+|++++...........-.+.++.|+..+++.++.++..|+++|.+++...++ ..++.|+.++...
T Consensus 416 Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~ 495 (852)
T 4fdd_A 416 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 495 (852)
T ss_dssp HHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh
Confidence 999999999999863211000001124778899999888999999999999999865432 3445566667666
Q ss_pred CcchHHHHHHHHHHHhhhcC----chHHHHHhhhhcchHHHHHH---HhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHH
Q 000184 584 LPESKVYVLDALKSMLSVVS----FSDILREGSAANDAVETMIK---ILSSTKEETQAKSASALAGIFETRKDLRESSIA 656 (1890)
Q Consensus 584 ~~~~~~~a~~aL~~L~~~~~----~~~~~~~~~~~~~~i~~Lv~---lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~ 656 (1890)
.......+.++++.+..... .++.+. ..+|.|++ .+.+++++++ .+..++..++..-..... ...
T Consensus 496 ~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~------~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~-~~~ 567 (852)
T 4fdd_A 496 QHKNLLILYDAIGTLADSVGHHLNKPEYIQ------MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFL-PYC 567 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGCCHHHHH------HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGH-HHH
T ss_pred ChHHHHHHHHHHHHHHHHhhhhhccHHHHH------HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHH-HHH
Confidence 55555667777777754221 122222 23566663 4455666664 788888888865222110 111
Q ss_pred cCchHHHHHhhc-----------------CCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHH
Q 000184 657 VKTLWSVMKLLD-----------------VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 719 (1890)
Q Consensus 657 ~g~i~~Lv~lL~-----------------~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~ 719 (1890)
...++.++.++. .++.+.+..++.+++.++.......+..+.+.+.++.+..++.+++.++|+
T Consensus 568 ~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~ 647 (852)
T 4fdd_A 568 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQ 647 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHH
Confidence 123343444432 235668888999999998655433333233678999999999999999999
Q ss_pred HHHHHHHHHhc-CchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhc
Q 000184 720 QATCALANLIL-DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLES 798 (1890)
Q Consensus 720 ~aa~aL~nL~~-~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~ 798 (1890)
.+.+++..++. .++....++ ..+++.+.+.+..+..+++.+|+|++..+...... .+..| ....++.|++.+++
T Consensus 648 ~a~~~l~~l~~~~~~~~~~~l-~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~--~~~p~--~~~il~~L~~~l~~ 722 (852)
T 4fdd_A 648 SSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQPY--IPMVLHQLVEIINR 722 (852)
T ss_dssp HHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG--GGGGG--THHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH--hHHHH--HHHHHHHHHHHhCC
Confidence 99999999983 222222222 34788888888777777999999999998765432 23332 24788999999987
Q ss_pred cC-cccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhc-CChhHHHHHHHHHHHHhcCCc
Q 000184 799 AS-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIAD-ATPLLQDKAIEILSRLCRDQP 869 (1890)
Q Consensus 799 ~~-~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~ 869 (1890)
++ .....+++..++..|...++. .+.--.+..+.++.+.|.. ++..-++.|++.|..+-.-+|
T Consensus 723 ~~~~~~~~~~a~~~igrl~~~~~~--------~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p 787 (852)
T 4fdd_A 723 PNTPKTLLENTAITIGRLGYVCPQ--------EVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 787 (852)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHCHH--------HHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG
T ss_pred CCCCchHHHHHHHHHHHHHHhCHH--------HhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhCh
Confidence 65 333338999999999776532 1111234567788888876 456678999998877744333
No 38
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.83 E-value=2.3e-17 Score=218.79 Aligned_cols=573 Identities=13% Similarity=0.067 Sum_probs=395.2
Q ss_pred hHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccch
Q 000184 18 TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE 97 (1890)
Q Consensus 18 ~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~ 97 (1890)
....+..+++.+.+. +...|..|+..|..++..-...+. ....+|.|...+ +.+++++..++..|+.++..-.
T Consensus 8 ~~~~i~~l~~~l~s~--~~~~R~~A~~~l~~i~~~~~~~~~----~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~ 80 (588)
T 1b3u_A 8 SLYPIAVLIDELRNE--DVQLRLNSIKKLSTIALALGVERT----RSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp SSHHHHHHHHHTTCS--CHHHHHHHHHTHHHHHHHSCHHHH----HHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGT
T ss_pred CcCcHHHHHHHhhcc--cHHHHHHHHHhHHHHHHHhCHHHH----HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccC
Confidence 456788999998864 567888999998877653211111 124456666554 6778999999999998874211
Q ss_pred hhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHH
Q 000184 98 LRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGA 177 (1890)
Q Consensus 98 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~ 177 (1890)
.. -.....++.|..++.+++..+|..|..+|.++..... . ..+..-.+|.+.++..+ ....++..+..+
T Consensus 81 ~~--~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~-~-----~~~~~~l~~~l~~l~~~---~~~~~R~~a~~~ 149 (588)
T 1b3u_A 81 GP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-P-----SDLEAHFVPLVKRLAGG---DWFTSRTSACGL 149 (588)
T ss_dssp SG--GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC-H-----HHHHHTHHHHHHHHHTC---SSHHHHHHHGGG
T ss_pred cH--HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCC-H-----HHHHHHHHHHHHHHhcC---CCcHHHHHHHHH
Confidence 11 1122356777777788899999999999999987211 1 11233345666555543 345577777778
Q ss_pred HHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHH
Q 000184 178 LRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRA 257 (1890)
Q Consensus 178 L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~ 257 (1890)
+..++...+... ....++.+..++.++++.+|..++.+|..++...+. .......+|.+..+++.+ +..+|.
T Consensus 150 l~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~-~~~vr~ 221 (588)
T 1b3u_A 150 FSVCYPRVSSAV----KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDE-QDSVRL 221 (588)
T ss_dssp HHHHTTTSCHHH----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCS-CHHHHT
T ss_pred HHHHHHhcCHHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---HhHHHHHHHHHHHHhcCC-cHHHHH
Confidence 888775433221 123478888889999999999999999988755432 122345678888888765 568999
Q ss_pred HHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCC
Q 000184 258 EAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSS 337 (1890)
Q Consensus 258 ~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~ 337 (1890)
.|+.+|..++...+.. ......+|.+..++.+++ ..++..++.+|..++..
T Consensus 222 ~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~---------~~vR~~a~~~l~~l~~~----------------- 272 (588)
T 1b3u_A 222 LAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKS---------WRVRYMVADKFTELQKA----------------- 272 (588)
T ss_dssp THHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSS---------HHHHHHHHHTHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCC---------HHHHHHHHHHHHHHHHH-----------------
Confidence 9999999887643221 111224455555553332 34455555544443210
Q ss_pred hhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHH
Q 000184 338 PAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLV 417 (1890)
Q Consensus 338 ~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv 417 (1890)
..++ ......++.++
T Consensus 273 -------------------------------------------------------------~~~~----~~~~~l~~~l~ 287 (588)
T 1b3u_A 273 -------------------------------------------------------------VGPE----ITKTDLVPAFQ 287 (588)
T ss_dssp -------------------------------------------------------------HCHH----HHHHTHHHHHH
T ss_pred -------------------------------------------------------------hCcc----cchhHHHHHHH
Confidence 0000 11124567888
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccCchh-hHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCC
Q 000184 418 GLITMATNEVQEELVRALLKLCNNEGSL-WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGG 496 (1890)
Q Consensus 418 ~lL~~~~~~v~~~a~~aL~~L~~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~ 496 (1890)
.+++++++.+|..++.+|..++..-+.. .........+|.+..+++++++.+|..++++|..++.... ... .....
T Consensus 288 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~-~~~~l 364 (588)
T 1b3u_A 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--KDN-TIEHL 364 (588)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HHH-HHHHT
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--HhH-HHHHH
Confidence 8888899999999999999988653321 1111223567889999999999999999999999974211 111 12347
Q ss_pred cHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC-----CC
Q 000184 497 IPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-----TA 571 (1890)
Q Consensus 497 i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~-----~~ 571 (1890)
+|.+..++.++++++|..++.+|..+........ .....+|.|..++++.+++++..++.+|..++..-. +.
T Consensus 365 ~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 441 (588)
T 1b3u_A 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEK 441 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 8899999999999999999999998876321111 123467889999999899999999999999875322 23
Q ss_pred cHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHH
Q 000184 572 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651 (1890)
Q Consensus 572 ~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~ 651 (1890)
.++.+...+.+.++.++..+..+++.+....+.... ....+|.|..++.+++..+|..+++++..++..-..
T Consensus 442 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~------~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~-- 513 (588)
T 1b3u_A 442 LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA------HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ-- 513 (588)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH------HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH------HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH--
Confidence 456677778888888999999999988775443321 123488888888899999999999999999874221
Q ss_pred HHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000184 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 652 ~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~ 729 (1890)
.......+|.|..++.++++.++..++.+++.++...... ......++.|..++.+++.+||..|+.++..+.
T Consensus 514 -~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 514 -DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp -HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh----hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 1234568999999999999999999999999997643211 223456777888889999999999999998663
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.81 E-value=1.1e-18 Score=197.89 Aligned_cols=199 Identities=19% Similarity=0.251 Sum_probs=181.9
Q ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHH
Q 000184 410 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 489 (1890)
Q Consensus 410 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 489 (1890)
.+..+.|+.++++++++++..|+++|.+++..++..+..+.+.|+++.|+++|++++++++..|+++|+|++.++++++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 47889999999999999999999999999988788888999999999999999999999999999999999977889999
Q ss_pred HHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC
Q 000184 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~ 569 (1890)
.+.+.|+++.|+++|.++++.+++.|+++|+||+.++++.+..+.+.|+++.|+++++++++.++..|+++|+|++.+++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999998888888889999999999999999999999999999999987432
Q ss_pred CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 000184 570 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 645 (1890)
Q Consensus 570 ~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~ 645 (1890)
. .+..+.+.|+++.|++++.++++++++.|+++|.+|+.
T Consensus 171 ~-------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 E-------------------------------------QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp H-------------------------------------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred H-------------------------------------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 1 12234567899999999999999999999999999985
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.81 E-value=1.5e-18 Score=196.90 Aligned_cols=200 Identities=20% Similarity=0.246 Sum_probs=181.9
Q ss_pred hcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHH
Q 000184 451 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIR 530 (1890)
Q Consensus 451 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r 530 (1890)
..++.+.|+.+|++++++++..|+++|++++.++++.+..+.+.|+++.|+++|.++++++++.|+++|+||+..+++.+
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 34788999999999999999999999999998788999999999999999999999999999999999999998788999
Q ss_pred HHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHH
Q 000184 531 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 610 (1890)
Q Consensus 531 ~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 610 (1890)
..+.+.|+++.|+++++++++.++..|+++|+|++.+.+. ...
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-------------------------------------~~~ 132 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-------------------------------------QIQ 132 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-------------------------------------HHH
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH-------------------------------------HHH
Confidence 9999999999999999999999999999999999864321 111
Q ss_pred hhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHc
Q 000184 611 GSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 687 (1890)
Q Consensus 611 ~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 687 (1890)
.+.+.++++.|+++++++++.+++.|+++|.+++..+++.+..+...|+++.|+.++.++++.++..|+.+|.+|+.
T Consensus 133 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 33467899999999999999999999999999999888888889999999999999999999999999999999964
No 41
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.78 E-value=1.4e-18 Score=195.15 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=168.7
Q ss_pred cHHHHHHhhCCCCH--HHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHH
Q 000184 454 GIQLLISLLGLSSE--QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 531 (1890)
Q Consensus 454 ~i~~Lv~lL~~~~~--~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~ 531 (1890)
.+|.||++|+++++ +++..|+++|.+|+.++++++..+.+.|+||+|+++|.++++++|+.|+|+|.||+..++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999988 8999999999999987889999999999999999999999999999999999999987899999
Q ss_pred HHHhCCCHHHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHH
Q 000184 532 CVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 610 (1890)
Q Consensus 532 ~i~~~g~i~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~ 610 (1890)
.|.+.|+||+|+++|++ +++.+++.|+.+||||+.+.+. +.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~--------------------------------------k~ 130 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL--------------------------------------KN 130 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG--------------------------------------HH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh--------------------------------------HH
Confidence 99999999999999984 7899999999999999864321 11
Q ss_pred hhhhcchHHHHHHHhc----------------CCCHHHHHHHHHHHHHHhhcChhHHHHHHHc-CchHHHHHhhcCC---
Q 000184 611 GSAANDAVETMIKILS----------------STKEETQAKSASALAGIFETRKDLRESSIAV-KTLWSVMKLLDVG--- 670 (1890)
Q Consensus 611 ~~~~~~~i~~Lv~lL~----------------s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~-g~i~~Lv~lL~~~--- 670 (1890)
.+. .+|+|+|++++. +.+++++++|+.+|.||+..+++.|..+.+. |.|+.|+.++++.
T Consensus 131 ~i~-~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~ 209 (233)
T 3tt9_A 131 LMI-TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIAD 209 (233)
T ss_dssp HHH-HHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHT
T ss_pred HHH-hccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhc
Confidence 122 246888887652 2367999999999999999878889888876 6689999999542
Q ss_pred ---CHHHHHHHHHHHHHHHcc
Q 000184 671 ---SECILVEASRCLAAIFLS 688 (1890)
Q Consensus 671 ---~~~v~~~a~~aL~~L~~~ 688 (1890)
+...+..+..+|.||+..
T Consensus 210 ~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 210 YQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCTTCHHHHHHHHHHHHHCCC
T ss_pred ccchhHHHHHHHHHHHHHHhh
Confidence 446789999999999754
No 42
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=191.80 Aligned_cols=196 Identities=14% Similarity=0.133 Sum_probs=173.7
Q ss_pred hHHHHHhhcCCCCCh-HHHHHHHHHHHHhh-CCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhH
Q 000184 370 VEQTLVNQFKPRLPF-LVQERTIEALASLY-GNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWR 447 (1890)
Q Consensus 370 i~~~L~~ll~~~~~~-~~~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 447 (1890)
.++.|++++.+++++ .+|..|+..+.+++ .++.++..+.+.|++|+|+.+|+++++++|+.|+++|+||+..+++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 467789999888762 46889999999996 6788999999999999999999999999999999999999998788999
Q ss_pred HHHhcCcHHHHHHhhC-CCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhcc----------------CCCHH
Q 000184 448 ALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE----------------SGSAK 510 (1890)
Q Consensus 448 ~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~----------------~~~~~ 510 (1890)
.|.++|+||+|+++|+ +++.++++.|+++|+||+. .++++..|.+. ++++|++++. ..+++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999998 5799999999999999995 78889888874 7999999763 12669
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhC-CCHHHHHHHhhcC------ChhHHHHHHHHHHHHhcC
Q 000184 511 AKEDSASILRNLCNHSEDIRACVESA-DAVPALLWLLKNG------SANGKEIAAKTLNHLIHK 567 (1890)
Q Consensus 511 ~~e~a~~aL~~L~~~~~~~r~~i~~~-g~i~~Lv~ll~~~------~~~~~~~Aa~aL~~L~~~ 567 (1890)
++++|+++|.||+..+++.|+.+.+. |+|+.|+.+++.+ +.+.++.+..+|+||++.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998778999999985 6789999999873 457899999999999875
No 43
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.77 E-value=8.5e-16 Score=214.13 Aligned_cols=779 Identities=10% Similarity=0.046 Sum_probs=462.7
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcC--CHHHHHHHHHHHHHhhccc-hh
Q 000184 22 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG--SLAVKIQAATVLGSLCKEN-EL 98 (1890)
Q Consensus 22 v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~--~~~~~~~aa~~L~~L~~~~-~~ 98 (1890)
+.++++.+.+. +.+.|..|...|-.+.... ..+.++.|+..|.+. ++.+|..|+.+|.+..... +.
T Consensus 3 l~~~L~~~~s~--d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 3 LITILEKTVSP--DRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhcC---------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Confidence 66777777653 5567888888887765531 136677888888874 5789999999999865322 11
Q ss_pred hHHHH-----------hcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCC
Q 000184 99 RVKVL-----------LGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSG 167 (1890)
Q Consensus 99 ~~~i~-----------~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~ 167 (1890)
+.... ....-+.++..|.+++... ..++.++..+.....+ .. .-...+|.|...+.... .+
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~----~~--~w~~ll~~l~~~l~~~~-~~ 143 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP----VN--QWPELIPQLVANVTNPN-ST 143 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG----GT--CCTTHHHHHHHHHHCTT-CC
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc----cc--ccHHHHHHHHHHHhCCC-CC
Confidence 11100 0011234778888777666 7788888887662111 00 11345788888876532 15
Q ss_pred chHHHHHHHHHHHhccCCh-hHHHHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCchhhh-HhhccchHHHH
Q 000184 168 NVVDNLLTGALRNLSTSTE-GFWAATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMMEEDVSVCS-RVLAADATKQL 243 (1890)
Q Consensus 168 ~~v~~~~~~~L~~L~~~~~-~~~~~i~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~-~i~~~g~i~~L 243 (1890)
+.++..++.+|..++..-. .... -.-...++.+...+.++ +.++|..++.+|..+....+.... .......++.+
T Consensus 144 ~~~r~~al~~l~~l~~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l 222 (876)
T 1qgr_A 144 EHMKESTLEAIGYICQDIDPEQLQ-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 222 (876)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHG-GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHhhHH-hHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6677788889998885321 1100 01123467788888877 689999999999887644332111 11111246666
Q ss_pred HHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCch
Q 000184 244 LKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSN 323 (1890)
Q Consensus 244 v~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~ 323 (1890)
.+.+.. .+.++|..++.+|..+....++.-........++.++..+... +..++..++..+.+++.....
T Consensus 223 ~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 223 CEATQC-PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD---------IDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHTTC-SSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS---------SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC---------chHHHHHHHHHHHHHHHHHHh
Confidence 666654 4678999999999999875543212222224456666655433 356777777777665531000
Q ss_pred hhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCcc
Q 000184 324 VISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLL 403 (1890)
Q Consensus 324 ~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~ 403 (1890)
.. . +... ... +......+ . ....+
T Consensus 293 ~~--~--------------~~~~-------~~~---~~~~~~~~-------------~-~~~~~---------------- 316 (876)
T 1qgr_A 293 LA--I--------------EASE-------AAE---QGRPPEHT-------------S-KFYAK---------------- 316 (876)
T ss_dssp HH--H--------------HHHH-------HHH---HSSCCSSC-------------C-CCHHH----------------
T ss_pred Hh--h--------------hhcc-------ccc---cCCCccch-------------h-HHHHH----------------
Confidence 00 0 0000 000 00000000 0 00000
Q ss_pred chhhhhcCcHHHHHHHhc-------CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHH
Q 000184 404 SIKLENSEAKRLLVGLIT-------MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVAL 476 (1890)
Q Consensus 404 ~~~l~~~g~i~~Lv~lL~-------~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 476 (1890)
..+ ...++.++..+. +.++.+|..+..+|..++...++ .+. ...++.+...+.++++.+|+.|+.+
T Consensus 317 -~~~--~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~a~~~ 389 (876)
T 1qgr_A 317 -GAL--QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMA 389 (876)
T ss_dssp -HHH--HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -HHH--HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHHHHHH
Confidence 000 123444555553 34567899999999988765332 111 1456777788889999999999999
Q ss_pred HHHcccCCh-hcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHH---HHHHHhCCCHHHHHHHhhcCChh
Q 000184 477 LCLLSNEND-DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSAN 552 (1890)
Q Consensus 477 L~nL~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~---r~~i~~~g~i~~Lv~ll~~~~~~ 552 (1890)
|+.++.+.. +...... ...++.++..+.++++.+|..|+++|.+++...+.. ...+ ...++.|+..+.+. +.
T Consensus 390 l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~ 465 (876)
T 1qgr_A 390 FGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PR 465 (876)
T ss_dssp HHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HH
T ss_pred HHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HH
Confidence 999996543 2222222 347899999999999999999999999999753321 1111 24677888888774 88
Q ss_pred HHHHHHHHHHHHhcCCC---------------------CCcHHHHHHHHhcC---CcchHHHHHHHHHHHhhhcCchHHH
Q 000184 553 GKEIAAKTLNHLIHKSD---------------------TATISQLTALLTSD---LPESKVYVLDALKSMLSVVSFSDIL 608 (1890)
Q Consensus 553 ~~~~Aa~aL~~L~~~~~---------------------~~~i~~L~~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~~ 608 (1890)
++..++++|.+++.... +..++.|...+... ...++..+.++++.+....+...
T Consensus 466 v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~-- 543 (876)
T 1qgr_A 466 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDC-- 543 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTT--
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhh--
Confidence 99999999999985411 12344455555543 34677788999998877544321
Q ss_pred HHhhhhcchHHHHHHHhcC----------C-C----HHHHHHHHHHHHHHhhcCh-hHHHHHHHcCchHHHHHhhcCCC-
Q 000184 609 REGSAANDAVETMIKILSS----------T-K----EETQAKSASALAGIFETRK-DLRESSIAVKTLWSVMKLLDVGS- 671 (1890)
Q Consensus 609 ~~~~~~~~~i~~Lv~lL~s----------~-~----~~~~~~A~~aL~~L~~~~~-~~~~~~~~~g~i~~Lv~lL~~~~- 671 (1890)
... -...++.+++.+.. . + ++++..++.++..++..-. ... .......+|.++.++.+.+
T Consensus 544 ~~~--~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~ 620 (876)
T 1qgr_A 544 YPA--VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA-LQISDVVMASLLRMFQSTAG 620 (876)
T ss_dssp HHH--HHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH-HTTHHHHHHHHHHHC-----
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh-hHHHHHHHHHHHHHHHhccC
Confidence 111 12235666655532 2 2 4567889999999987644 211 1122456788888887654
Q ss_pred -HHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCC-CHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHH
Q 000184 672 -ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLILDSEVSEKAIAEEIILPATR 749 (1890)
Q Consensus 672 -~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~-~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ 749 (1890)
..++..++.++..++...+..... .. ...++.|...+.+. +++++..+.+++..|+..-.......-..+++.+.+
T Consensus 621 ~~~v~~~a~~~l~~l~~~~~~~~~~-~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~ 698 (876)
T 1qgr_A 621 SGGVQEDALMAVSTLVEVLGGEFLK-YM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLE 698 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGG-GH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhhHHH-HH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 367888999999987643221111 11 23678888888876 899999999999999732211222234678888999
Q ss_pred HHhcC--CcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCc-----------ccchHHHHHHHHHHH
Q 000184 750 VLCEG--TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASG-----------SVATSEALDALAILS 816 (1890)
Q Consensus 750 ll~~~--~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~-----------~v~~~~al~~L~~l~ 816 (1890)
.+.+. +.+++..+.+++.++....... +..| -...++.+...+..... .+. ..++.++..++
T Consensus 699 ~l~~~~~~~~~~~~~~~~l~~i~~~~g~~--~~~~--l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r-~~~~~~~~~i~ 773 (876)
T 1qgr_A 699 NLGNENVHRSVKPQILSVFGDIALAIGGE--FKKY--LEVVLNTLQQASQAQVDKSDYDMVDYLNELR-ESCLEAYTGIV 773 (876)
T ss_dssp HHTCTTSCGGGHHHHHHHHHHHHHHHGGG--GGGG--HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HhCCccccHHhhHHHHHHHHHHHHHhchh--HHHH--HHHHHHHHHHHHhccCCCCChHHHHHHHHHH-HHHHHHHHHHH
Confidence 98873 4569999999999997633322 2221 12456666666654321 233 55667777665
Q ss_pred hcCCCCC-CCCC-ccceeecCCCChhhHHhHhhcC--ChhHHHHHHHHHHHHhcCCccchhh-hhcc--CccchHHHHHH
Q 000184 817 RSGGASG-HVKP-AWQVLAEFPKSITPIVSSIADA--TPLLQDKAIEILSRLCRDQPAVLGD-EVTG--ASGCISSIARR 889 (1890)
Q Consensus 817 ~~~~~~~-~~~~-~~~~~~~~~~~l~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~g~-~i~~--~~~~~~~~~~~ 889 (1890)
+...... ...+ .-...-..+..+..+.....+. ++.+|..|..+|..++..- |. .+.. ...++..++..
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~~i~~ll~~ 849 (876)
T 1qgr_A 774 QGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAF----GKDVLKLVEARPMIHELLTE 849 (876)
T ss_dssp HHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHH----CTHHHHHHHTSHHHHHHHHH
T ss_pred HHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh----CcHHHHHHHhcHHHHHHHHH
Confidence 5422100 0000 0001101122232222333455 6799999999998884321 11 1111 12334445555
Q ss_pred HhhcCCCceeecchhHHHHHhhhc
Q 000184 890 VISCTNPKVKIGGAALLICAAKVN 913 (1890)
Q Consensus 890 ~l~s~~~~~r~~~~~~~~~~a~~~ 913 (1890)
.++++++++|..|+|++..++|+.
T Consensus 850 ~l~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 850 GRRSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCHhHHHHHHHHHHHHHHhh
Confidence 778999999999999999999873
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.77 E-value=1.9e-17 Score=195.03 Aligned_cols=226 Identities=16% Similarity=0.155 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHH-hccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHH
Q 000184 467 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQ-ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL 545 (1890)
Q Consensus 467 ~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~l 545 (1890)
.+.+..|...|.+++. +.++...+.+.|++++|+. +|.++++.+|+.|+|+|++++.+++.+|+.+.+.|++|+|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4567889999999995 6788999999999999999 9999999999999999999999889999999999999999999
Q ss_pred hhcC-ChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHH
Q 000184 546 LKNG-SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKI 624 (1890)
Q Consensus 546 l~~~-~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~l 624 (1890)
++++ ++.+++.|+|+|+|++++.++ ....+...+|+|.|+.+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~-------------------------------------~~~~~~~~ggi~~L~~l 175 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEA-------------------------------------GLLQFLRLDGFSVLMRA 175 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHH-------------------------------------HHHHHHHTTHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcH-------------------------------------HHHHHHHCCCHHHHHHH
Confidence 9964 788999999999999875432 11234457899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhC-CCh
Q 000184 625 LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVAR-DAL 703 (1890)
Q Consensus 625 L~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~-~~v 703 (1890)
|+++++.+|..|+|+|++++.++++.+..+++.|++|+|+.+|.+++..++..++++|.+|+...+...+. .... ..+
T Consensus 176 L~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~l 254 (296)
T 1xqr_A 176 MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRE-CREPELGL 254 (296)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHH-HHCGGGCH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHH-HhccHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999998874322221 1111 112
Q ss_pred HHHH----HHhC-CC-CHHHHHHHHHHHHHHhcC
Q 000184 704 SPLV----VLAG-SP-VLEVAEQATCALANLILD 731 (1890)
Q Consensus 704 ~~Lv----~ll~-~~-~~ev~~~aa~aL~nL~~~ 731 (1890)
..++ +-+. +. ..++.+.+...+.+.+.+
T Consensus 255 ~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~~ 288 (296)
T 1xqr_A 255 EELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSS 288 (296)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHcCC
Confidence 2222 2222 22 356666766666666643
No 45
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.76 E-value=4.8e-14 Score=196.04 Aligned_cols=765 Identities=13% Similarity=0.033 Sum_probs=467.6
Q ss_pred HHHHHHHHHH-HccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcC--CHHHHHHHHHHHHHhhccc
Q 000184 20 ASVAQCIEQL-RQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG--SLAVKIQAATVLGSLCKEN 96 (1890)
Q Consensus 20 ~~v~~~~~~l-~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~--~~~~~~~aa~~L~~L~~~~ 96 (1890)
.++.++++.. .+. +...|..|...|..+.+.. ..+.++.|+.++.+. ++.+|..|+..|.+..+..
T Consensus 4 ~~l~~~L~~~~~s~--d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~ 72 (861)
T 2bpt_A 4 AEFAQLLENSILSP--DQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK 72 (861)
T ss_dssp HHHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHHcccCc--CHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc
Confidence 3678888887 754 5568889999988876531 135677888888764 5789999999999976432
Q ss_pred h--------hhHH--H---HhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhcc
Q 000184 97 E--------LRVK--V---LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNG 163 (1890)
Q Consensus 97 ~--------~~~~--i---~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~ 163 (1890)
. .+.. + .....-+.|+..|.+++...+..++.+|..+.....+... -...+|.|++.+.+.
T Consensus 73 w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~------w~~ll~~L~~~l~~~ 146 (861)
T 2bpt_A 73 DSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA------WPELMKIMVDNTGAE 146 (861)
T ss_dssp SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC------CHHHHHHHHHHTSTT
T ss_pred ChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccc------cHHHHHHHHHHHhcC
Confidence 1 0001 0 1112235788888889999999999999988772111000 012455666665432
Q ss_pred CCCCchHHHHHHHHHHHhccCChhHH---HHHHhcCCHHHHHHhhcCC--CHHHHHHHHHHHHHHhhcCchhhh-Hhhcc
Q 000184 164 LKSGNVVDNLLTGALRNLSTSTEGFW---AATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMMEEDVSVCS-RVLAA 237 (1890)
Q Consensus 164 ~~~~~~v~~~~~~~L~~L~~~~~~~~---~~i~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~-~i~~~ 237 (1890)
.++.++..++.+|..++..-.... .. .....++.+...+.++ ++++|..++.+|..+....+.... .....
T Consensus 147 --~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~ 223 (861)
T 2bpt_A 147 --QPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERN 223 (861)
T ss_dssp --SCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHH
Confidence 156677778888888885321100 00 0112366777888887 899999999999876532221110 00012
Q ss_pred chHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHH-HHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHH
Q 000184 238 DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALAN 316 (1890)
Q Consensus 238 g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~n 316 (1890)
..++.|.+.+.+ .+.++|..++.+|..+....++. ...+. ...++.+...+.+. +..++..++..+..
T Consensus 224 ~ll~~l~~~~~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~---------~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 224 YLMQVVCEATQA-EDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSP---------NDKVASMTVEFWST 292 (861)
T ss_dssp HHHHHHHHHHTC-SCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCS---------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC---------cHHHHHHHHHHHHH
Confidence 245666666655 46789999999999988744321 11111 13344455555443 36788888888887
Q ss_pred hhCCCchhhhhhhccccCCCC-hhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCC------CChHHHHH
Q 000184 317 ISGGLSNVISSLGQSLESCSS-PAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR------LPFLVQER 389 (1890)
Q Consensus 317 l~~~~~~~i~~l~~~~~~~~~-~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~------~~~~~~~~ 389 (1890)
++.........-.+....|.. ..... ..+ ..+.+.++..+... +...++..
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------~~il~~ll~~l~~~~~d~~d~~~~~r~~ 350 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFAL---SSI-------------------KDVVPNLLNLLTRQNEDPEDDDWNVSMS 350 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHH---HHH-------------------HHHHHHHHHHTTCCCCC-CCCCCHHHHH
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHH---HHH-------------------HHHHHHHHHHHHhcccccccccCcHHHH
Confidence 764110000000000000000 00000 000 13445555555432 12346888
Q ss_pred HHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhhHHHHhcCcHHHHHHhhCCCCHH
Q 000184 390 TIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSSEQ 468 (1890)
Q Consensus 390 a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~ 468 (1890)
+..+|..++..-. ..+ -...++.+...+.+.++.+|+.++.++..++.... ....... ...++.|+..++++++.
T Consensus 351 a~~~L~~l~~~~~--~~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 351 AGACLQLFAQNCG--NHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHHG--GGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHcc--HhH-HHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHH
Confidence 8888888754211 111 12345667777788899999999999999986532 2111122 14678999999999999
Q ss_pred HHHHHHHHHHHcccCChhc---HHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCC-----hHHHHHHHhCCCHH
Q 000184 469 QQECSVALLCLLSNENDDS---KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS-----EDIRACVESADAVP 540 (1890)
Q Consensus 469 v~~~A~~aL~nL~~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~-----~~~r~~i~~~g~i~ 540 (1890)
++..++++|+.++...... ... -...++.|+..+.+. +.++..|+++|.+++... +.....+ ...++
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~ 501 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVD 501 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHH
Confidence 9999999999988421110 001 123577888888776 899999999999998631 1111111 23567
Q ss_pred HHHHHhhcCC--hhHHHHHHHHHHHHhcCCCCCc-------HHHHHHHHhcC---------------CcchHHHHHHHHH
Q 000184 541 ALLWLLKNGS--ANGKEIAAKTLNHLIHKSDTAT-------ISQLTALLTSD---------------LPESKVYVLDALK 596 (1890)
Q Consensus 541 ~Lv~ll~~~~--~~~~~~Aa~aL~~L~~~~~~~~-------i~~L~~lL~~~---------------~~~~~~~a~~aL~ 596 (1890)
.|+.++++.+ +.++..+..++..+........ ++.++..+... ...++..+..+++
T Consensus 502 ~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 581 (861)
T 2bpt_A 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLA 581 (861)
T ss_dssp HHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHH
Confidence 8888887543 7899999999999987655322 23344444421 2335566777877
Q ss_pred HHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCH-HHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHH
Q 000184 597 SMLSVVSFSDILREGSAANDAVETMIKILSSTKE-ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECIL 675 (1890)
Q Consensus 597 ~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~-~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~ 675 (1890)
.+....+..- .. .-...++.+...+.+.+. .+++.+..++..++........ ..-...+|.|...+.++++.++
T Consensus 582 ~l~~~~~~~~--~~--~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~~~~~~vr 656 (861)
T 2bpt_A 582 AVIRKSPSSV--EP--VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFE-KYLETFSPYLLKALNQVDSPVS 656 (861)
T ss_dssp HHHHHCGGGT--GG--GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHhhhhh--HH--HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhccccHHHH
Confidence 7765432210 00 012347788888888766 8999999999999865332111 1233478889999988888899
Q ss_pred HHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCC--HHHHHHHHHHHHHHhcC-chHHHHHHhcCcHHHHHHHHh
Q 000184 676 VEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPV--LEVAEQATCALANLILD-SEVSEKAIAEEIILPATRVLC 752 (1890)
Q Consensus 676 ~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~--~ev~~~aa~aL~nL~~~-~~~~~~~~~~~~v~~L~~ll~ 752 (1890)
..++.++..++....+... ..-...++.+++.+.+++ .+++..+..+++.++.. ++....+ -..+++.+.+.+.
T Consensus 657 ~~a~~~l~~l~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-l~~~l~~l~~~~~ 733 (861)
T 2bpt_A 657 ITAVGFIADISNSLEEDFR--RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY-LNDIMALCVAAQN 733 (861)
T ss_dssp HHHHHHHHHHHHHTGGGGH--HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhchhcc--chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHh
Confidence 9999999999865543211 122456777788887764 78999999999999832 2222222 3577888888887
Q ss_pred cCC-----------cchHHHHHHHHHHHhhcCccc-hhHhhhhhhhccHHHHHHHhhcc----CcccchHHHHHHHHHHH
Q 000184 753 EGT-----------ISGKTLAAAAIARLLHSRKID-YTITDCVNRAGTVLALVSFLESA----SGSVATSEALDALAILS 816 (1890)
Q Consensus 753 ~~~-----------~~~~~~aa~aL~~L~~~~~~~-~~~~~~~~~~g~l~~li~~l~~~----~~~v~~~~al~~L~~l~ 816 (1890)
... ..+|..+..++..+....... ..+..|+ ...+..+...+.+. +..+. ..|+.+|..++
T Consensus 734 ~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~--~~i~~~l~~~~~d~~~~~~~~vr-~~a~~~l~~l~ 810 (861)
T 2bpt_A 734 TKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYV--GTIFQFIAQVAEDPQLYSEDATS-RAAVGLIGDIA 810 (861)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGH--HHHHHHHHHHHHCHHHHTSHHHH-HHHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH--HHHHHHHHHHHcCcccCCcHHHH-HHHHHHHHHHH
Confidence 532 236788888888887543321 2222211 12344444555442 45566 88999999998
Q ss_pred hcCCCCCCCCCccceeecCC-CChhhHHhHhhc---CChhHHHHHHHHHHHH
Q 000184 817 RSGGASGHVKPAWQVLAEFP-KSITPIVSSIAD---ATPLLQDKAIEILSRL 864 (1890)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~l~~---~~~~~~~~a~~~L~~l 864 (1890)
+.-++..+ ..-.+ ..+..|++.+.. .+..+++.|..+++.+
T Consensus 811 ~~~~g~~~-------~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~ 855 (861)
T 2bpt_A 811 AMFPDGSI-------KQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp HHCTTSTT-------GGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHcCCchH-------HHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 76522111 11123 357778888773 5578899999988777
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.73 E-value=2.2e-14 Score=199.45 Aligned_cols=751 Identities=14% Similarity=0.082 Sum_probs=461.9
Q ss_pred HHHHHHh-hcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCCCCcccc
Q 000184 68 PVLVSLL-RSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSS--SAEGQIAAAKTIYAVSQGGAKDYVGS 144 (1890)
Q Consensus 68 ~~Lv~lL-~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~ls~~~~~~~~~~ 144 (1890)
..++..+ .+++.++|..|-..|..+.+++ ..+.++.|+..+.++ +..+|..|+..|++.-... .....
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~--w~~~~ 77 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDN-------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK--DSVKT 77 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS--SHHHH
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhC-------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc--ChHHH
Confidence 3455555 6788899999999998875321 113567788888653 6888999999998864411 00000
Q ss_pred c----h----h---hhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCC-h-hHHHHHHhcCCHHHHHHhhcCC-CH
Q 000184 145 K----I----F---STEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-E-GFWAATVQAGGIDILVKLLTLG-QS 210 (1890)
Q Consensus 145 ~----~----~---~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~-~-~~~~~i~~~g~v~~Lv~lL~~~-~~ 210 (1890)
. . + .+..+-+.|++.+.. .++.++..++.+|..++... + ..|.. .++.|+..+.++ ++
T Consensus 78 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~w~~-----ll~~L~~~l~~~~~~ 149 (861)
T 2bpt_A 78 QQFAQRWITQVSPEAKNQIKTNALTALVS---IEPRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAEQPE 149 (861)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTTSCH
T ss_pred HHHHHhHhhhCCHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhhCcccccHH-----HHHHHHHHHhcCCCH
Confidence 0 0 0 112223445555543 34567777888888776432 2 24443 378899999998 99
Q ss_pred HHHHHHHHHHHHHhhcCchhh--hHhhccchHHHHHHHHcCCC-CHhHHHHHHHHHHHhhhcCHHHH-HHHHhcCChHHH
Q 000184 211 STQAHVCFLLACMMEEDVSVC--SRVLAADATKQLLKLLGSGN-EASVRAEAAGALKSLSDHCKDAR-REIAGSNGIPAM 286 (1890)
Q Consensus 211 ~v~~~a~~~L~~L~~~~~~~~--~~i~~~g~i~~Lv~lL~~~~-~~~~~~~Aa~aL~~Ls~~~~~~~-~~i~~~g~i~~L 286 (1890)
.++..++.+|..++....... -.-.....++.++..+.++. +.++|..++.+|.++...-..+- ........++.|
T Consensus 150 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 229 (861)
T 2bpt_A 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Confidence 999999999988875422110 00011334566677777642 57899999999998753222110 000001124445
Q ss_pred HHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCC
Q 000184 287 INATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSD 366 (1890)
Q Consensus 287 v~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~ 366 (1890)
...+.++ +..+++.++.+|..+....+... . +++-
T Consensus 230 ~~~~~~~---------~~~~r~~a~~~l~~l~~~~~~~~------------~----------~~l~-------------- 264 (861)
T 2bpt_A 230 CEATQAE---------DIEVQAAAFGCLCKIMSKYYTFM------------K----------PYME-------------- 264 (861)
T ss_dssp HHHHTCS---------CHHHHHHHHHHHHHHHHHHGGGC------------H----------HHHH--------------
T ss_pred HHHhcCC---------CHHHHHHHHHHHHHHHHHHHHHH------------H----------HHHH--------------
Confidence 5555433 36788888888888764211000 0 0000
Q ss_pred hhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCcc--------------ch-hhh--hcCcHHHHHHHhcC-------
Q 000184 367 PLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLL--------------SI-KLE--NSEAKRLLVGLITM------- 422 (1890)
Q Consensus 367 ~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~--------------~~-~l~--~~g~i~~Lv~lL~~------- 422 (1890)
..+.+.+...+... +..++..++..+..++..... .. .+. -...++.++..+..
T Consensus 265 -~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d 342 (861)
T 2bpt_A 265 -QALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED 342 (861)
T ss_dssp -HTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CC
T ss_pred -HHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 02333444444443 345688888888877543210 00 010 13456777777764
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCCh-hcHHHHHhcCCcHHHH
Q 000184 423 ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPLV 501 (1890)
Q Consensus 423 ~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~-~~~~~i~~~g~i~~Lv 501 (1890)
.++.++..+..+|..++...+.. +. ...++.+.+.+.+.++..++.|+.+|+.++.+.. +.-..... ..++.|+
T Consensus 343 ~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~ 417 (861)
T 2bpt_A 343 DDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSIL 417 (861)
T ss_dssp CCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHH
Confidence 23578999999999888643221 11 1345777778888999999999999999996432 22222222 4788899
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcCChHH---HHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC---------
Q 000184 502 QILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD--------- 569 (1890)
Q Consensus 502 ~lL~~~~~~~~e~a~~aL~~L~~~~~~~---r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~--------- 569 (1890)
..+.++++.+|..++++|++++...... ... -...++.|+..+++. +.++..++++|.+++....
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~ 494 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 9999999999999999999998631110 000 123578888888775 8999999999999986421
Q ss_pred --CCcHHHHHHHHhcCC--cchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcC---------------CCH
Q 000184 570 --TATISQLTALLTSDL--PESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS---------------TKE 630 (1890)
Q Consensus 570 --~~~i~~L~~lL~~~~--~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s---------------~~~ 630 (1890)
+..++.++.++.+.+ +.++..+.++++.+....+... ...+ ...+|.+++.+.. ...
T Consensus 495 ~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~--~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~ 570 (861)
T 2bpt_A 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV--AETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQ 570 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG--HHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhh--HHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHH
Confidence 123445566666433 6788899999999887654321 1111 1246667766642 145
Q ss_pred HHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCH-HHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHH
Q 000184 631 ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSE-CILVEASRCLAAIFLSVRENREVAAVARDALSPLVVL 709 (1890)
Q Consensus 631 ~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~l 709 (1890)
.++..++.+|.+++...+.... ......++.+...+.+.+. .++..+..++..++......... .-...++.|...
T Consensus 571 ~~~~~~~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~--~l~~i~~~l~~~ 647 (861)
T 2bpt_A 571 ELQSNILTVLAAVIRKSPSSVE-PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEK--YLETFSPYLLKA 647 (861)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTG-GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHH
Confidence 5788899999999976543111 1122467777777877665 78888889999887543322221 123478888888
Q ss_pred hCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCC--cchHHHHHHHHHHHhhcCccchhHhhhhhhhc
Q 000184 710 AGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGT--ISGKTLAAAAIARLLHSRKIDYTITDCVNRAG 787 (1890)
Q Consensus 710 l~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~--~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g 787 (1890)
+.+++.+++..+..++..++..-..........+++.+.+.+++.+ ..++..+.+++..+...... .+..|+ ..
T Consensus 648 l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~l--~~ 723 (861)
T 2bpt_A 648 LNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA--DFIPYL--ND 723 (861)
T ss_dssp HHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG--GGHHHH--HH
T ss_pred hccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh--hHHHHH--HH
Confidence 8888889999999999998732111222234677888888888765 66999999999999865432 233221 25
Q ss_pred cHHHHHHHhhccC-----------cccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcC----Chh
Q 000184 788 TVLALVSFLESAS-----------GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADA----TPL 852 (1890)
Q Consensus 788 ~l~~li~~l~~~~-----------~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~----~~~ 852 (1890)
.++.++..+.... ..+. ..+++++..++..-... +....-..+..+..|.+++.+. +..
T Consensus 724 ~l~~l~~~~~~~~~~~d~d~~~~~~~vr-~~~l~~~~~i~~~l~~~-----~~~~~~~~~~i~~~l~~~~~d~~~~~~~~ 797 (861)
T 2bpt_A 724 IMALCVAAQNTKPENGTLEALDYQIKVL-EAVLDAYVGIVAGLHDK-----PEALFPYVGTIFQFIAQVAEDPQLYSEDA 797 (861)
T ss_dssp HHHHHHHHHTCCCSSSSHHHHHHHHHHH-HHHHHHHHHHHHHTTTC-----HHHHGGGHHHHHHHHHHHHHCHHHHTSHH
T ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHH-HHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 6777777776421 1233 67778888777543321 1122222344566666676653 789
Q ss_pred HHHHHHHHHHHHhcCCccchhhhhccC-c-cchHHHHHHHhh---cCCCceeecchhHHHHHhh
Q 000184 853 LQDKAIEILSRLCRDQPAVLGDEVTGA-S-GCISSIARRVIS---CTNPKVKIGGAALLICAAK 911 (1890)
Q Consensus 853 ~~~~a~~~L~~l~~~~~~~~g~~i~~~-~-~~~~~~~~~~l~---s~~~~~r~~~~~~~~~~a~ 911 (1890)
++..|..++..++..-+ |..+..- . .+...++ ..++ +.+..+|-.|.|++..++|
T Consensus 798 vr~~a~~~l~~l~~~~~---g~~~~~~~~~~~~~~ll-~~l~~~~~~~~~~~~~~~wa~~~~~~ 857 (861)
T 2bpt_A 798 TSRAAVGLIGDIAAMFP---DGSIKQFYGQDWVIDYI-KRTRSGQLFSQATKDTARWAREQQKR 857 (861)
T ss_dssp HHHHHHHHHHHHHHHCT---TSTTGGGTTCHHHHHHH-HHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC---CchHHHHHhcHHHHHHH-HHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 99999999988843110 2211111 1 2223333 3333 4556788889999888765
No 47
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.73 E-value=3.7e-17 Score=192.50 Aligned_cols=182 Identities=18% Similarity=0.197 Sum_probs=172.2
Q ss_pred HHHHHHHHHHHhhCCCccchhhhhcCcHHHHHH-HhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCC
Q 000184 386 VQERTIEALASLYGNPLLSIKLENSEAKRLLVG-LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL 464 (1890)
Q Consensus 386 ~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 464 (1890)
-+..|+..|..+..+.++...+...|++++|+. +|+++++.+|..|+++|.+++.+++..+..+++.|++++|+.+|++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 488899999999999999999999999999999 9999999999999999999999988889999999999999999995
Q ss_pred -CCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHH
Q 000184 465 -SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALL 543 (1890)
Q Consensus 465 -~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv 543 (1890)
++..++..|+|+|+|++.+++...+.+.+.|+++.|+.+|.+++..++..|+|+|.+|+..+++.+..+.+.|++++|+
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 5889999999999999988888888999999999999999999999999999999999987888999999999999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcC
Q 000184 544 WLLKNGSANGKEIAAKTLNHLIHK 567 (1890)
Q Consensus 544 ~ll~~~~~~~~~~Aa~aL~~L~~~ 567 (1890)
.+|.++++.+++.++.+|+++...
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999874
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=7.8e-14 Score=173.53 Aligned_cols=464 Identities=17% Similarity=0.170 Sum_probs=314.8
Q ss_pred cchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHH
Q 000184 237 ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALAN 316 (1890)
Q Consensus 237 ~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~n 316 (1890)
...|+.|+.-+.+..-.+-|+.|...|+.+++.. + .-+.++|++.|+..|.... .|.++...++.+|.+
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~-~~Vg~~~l~~li~~L~~d~-------~D~e~v~~~LetL~~ 88 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---R-LEVGIQAMEHLIHVLQTDR-------SDSEIIGYALDTLYN 88 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---T-THHHHHTHHHHHHHHHSCT-------TCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---H-HHhhhhhHHHHHHHHhccc-------ccHHHHHHHHHHHHH
Confidence 4568888888888777889999999999998743 2 2355789999999998753 467888999999998
Q ss_pred hhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHH
Q 000184 317 ISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALAS 396 (1890)
Q Consensus 317 l~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~ 396 (1890)
+...... ++.. . .. ....++. ..+-+.
T Consensus 89 l~~~~~~-----------~~~~-~-~~-----------------------------------~~~~~~~-~~~~~d---- 115 (651)
T 3grl_A 89 IISNDEE-----------EEVE-E-NS-----------------------------------TRQSEDL-GSQFTE---- 115 (651)
T ss_dssp HHCCC--------------------------------------------------------------CH-HHHHHH----
T ss_pred HhCCCCc-----------cccc-c-cc-----------------------------------cccchHH-HHHHHH----
Confidence 7653210 0000 0 00 0000000 000000
Q ss_pred hhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch-hhHHHHhc-CcHHHHHHhhCCCCHHHHHHHH
Q 000184 397 LYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGS-LWRALQGR-EGIQLLISLLGLSSEQQQECSV 474 (1890)
Q Consensus 397 L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~-~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~A~ 474 (1890)
..+.+.+.++.|+.+|++.+..+|.+++.+|..|+.+++. .+++|..+ +|++.|+++|+++.+.+|.++.
T Consensus 116 --------~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneal 187 (651)
T 3grl_A 116 --------IFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGV 187 (651)
T ss_dssp --------HHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHH
T ss_pred --------HHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHH
Confidence 1233567899999999999999999999999999998877 88889865 9999999999999999999999
Q ss_pred HHHHHcccCChhcHHHHHhcCCcHHHHHhccCCC----HHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCC
Q 000184 475 ALLCLLSNENDDSKWAITAAGGIPPLVQILESGS----AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS 550 (1890)
Q Consensus 475 ~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~ 550 (1890)
..|.+|+.++.+.++.+.-+|+++.|++++..+. ..+.+.|+.+|.||...|+.++..+.+.|.++.|..+++.+.
T Consensus 188 lLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~ 267 (651)
T 3grl_A 188 LLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGD 267 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCS
T ss_pred HHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCc
Confidence 9999999988888888889999999999998653 378899999999999999999999999999999999997643
Q ss_pred hhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCC--
Q 000184 551 ANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST-- 628 (1890)
Q Consensus 551 ~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~-- 628 (1890)
+.. .-+.+.+.|+.. +-.++.+|-++..... .....|..+...|+++.|++++.++
T Consensus 268 ~~~-~W~~Qk~~N~~~------~L~iIrlLv~~~~~~~---------------~t~~nQ~~~~~~g~l~~Ll~ll~~~~~ 325 (651)
T 3grl_A 268 ENS-GWSAQKVTNLHL------MLQLVRVLVSPNNPPG---------------ATSSCQKAMFQCGLLQQLCTILMATGV 325 (651)
T ss_dssp CSS-CCCHHHHHHHHH------HHHHHHHHTCTTSCHH---------------HHHHHHHHHHHTTHHHHHHHHHTCSSC
T ss_pred ccc-ccHHHHHHHHHH------HHHHHHHHhCCCCCCC---------------CCHHHHHHHHHCCCHHHHHHHHccCCC
Confidence 210 000111222110 1122333332221100 0112466777899999999998765
Q ss_pred CHHHHHHHHHHHHHHhhcChhHHHHHHHcC-----chHHHHHh----hc-CCCHHHHHHHHHHHHHHHccCchhhHHHHH
Q 000184 629 KEETQAKSASALAGIFETRKDLRESSIAVK-----TLWSVMKL----LD-VGSECILVEASRCLAAIFLSVRENREVAAV 698 (1890)
Q Consensus 629 ~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g-----~i~~Lv~l----L~-~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 698 (1890)
...++..|..+++.+.++++..++.+.... ..|.++.+ +. .....++.+++.++.+.+.++.+.+.. +.
T Consensus 326 p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~-i~ 404 (651)
T 3grl_A 326 PADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGE-IV 404 (651)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHH-HH
Confidence 788999999999999999999998887654 23445444 43 355788999999999999887654444 32
Q ss_pred hC----------CCh---HHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHH-HHHh--------c---CcHHHHHHHHhc
Q 000184 699 AR----------DAL---SPLVVLAGSPVLEVAEQATCALANLILDSEVSE-KAIA--------E---EIILPATRVLCE 753 (1890)
Q Consensus 699 ~~----------~~v---~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~-~~~~--------~---~~v~~L~~ll~~ 753 (1890)
.. +.+ ..|..-+.+.++-----|+.+|..++.+++..+ +... + -.++.++.++..
T Consensus 405 ~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~ 484 (651)
T 3grl_A 405 STLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQ 484 (651)
T ss_dssp HTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTT
T ss_pred HhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhc
Confidence 21 111 123444555665334668888888887655444 4321 1 124445566654
Q ss_pred CCcchHHHHHHHHHHHh--hcCccchhHhhhhhhhccHHHHHHHhhc
Q 000184 754 GTISGKTLAAAAIARLL--HSRKIDYTITDCVNRAGTVLALVSFLES 798 (1890)
Q Consensus 754 ~~~~~~~~aa~aL~~L~--~~~~~~~~~~~~~~~~g~l~~li~~l~~ 798 (1890)
++ +.|. .-++..|+ |-.....++.+.+.+...++.|+..+..
T Consensus 485 ~~-~~ri--~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~~ 528 (651)
T 3grl_A 485 GS-KIQT--RVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAE 528 (651)
T ss_dssp TC-CHHH--HHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHHS
T ss_pred CC-chhH--HHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHHh
Confidence 32 2221 22233322 2233344555555555678888887754
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.67 E-value=1.2e-13 Score=192.54 Aligned_cols=748 Identities=14% Similarity=0.087 Sum_probs=437.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCCCCccc---
Q 000184 69 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKS--SSAEGQIAAAKTIYAVSQGGAKDYVG--- 143 (1890)
Q Consensus 69 ~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~ls~~~~~~~~~--- 143 (1890)
.++..+.+++.++|..|...|.++..++ ..+.++.|+..|.+ .+..+|..|+..|++.... ....
T Consensus 5 ~~L~~~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~---~~~~~~~ 74 (876)
T 1qgr_A 5 TILEKTVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTS---KDPDIKA 74 (876)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCC---SSHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc---cchHhHH
Confidence 3455566788999999999998875321 12456778888876 3588899999999985431 1100
Q ss_pred --cchh------hhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCC--hhHHHHHHhcCCHHHHHHhhcCC--CHH
Q 000184 144 --SKIF------STEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST--EGFWAATVQAGGIDILVKLLTLG--QSS 211 (1890)
Q Consensus 144 --~~~~------~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~--~~~~~~i~~~g~v~~Lv~lL~~~--~~~ 211 (1890)
.+.+ .+..+-+.|++.+... ++.+ ..++.++..++... ...|. ..++.|+..+.++ ++.
T Consensus 75 ~~~~~w~~l~~~~~~~ik~~ll~~l~~~---~~~~-~~~~~~l~~i~~~~~~~~~w~-----~ll~~l~~~l~~~~~~~~ 145 (876)
T 1qgr_A 75 QYQQRWLAIDANARREVKNYVLHTLGTE---TYRP-SSASQCVAGIACAEIPVNQWP-----ELIPQLVANVTNPNSTEH 145 (876)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTTC---CSSS-CHHHHHHHHHHHHHGGGTCCT-----THHHHHHHHHHCTTCCHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHhCCC---cHHH-HHHHHHHHHHHHhhCcccccH-----HHHHHHHHHHhCCCCCHH
Confidence 0001 1111222355555442 2334 45566666665321 13343 4578999999998 899
Q ss_pred HHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCC-CHhHHHHHHHHHHHhhhcCHHHH-HHHHhcCChHHHHHh
Q 000184 212 TQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-EASVRAEAAGALKSLSDHCKDAR-REIAGSNGIPAMINA 289 (1890)
Q Consensus 212 v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~~Aa~aL~~Ls~~~~~~~-~~i~~~g~i~~Lv~l 289 (1890)
++..++.+|..+........-.-.-...++.+.+.+..+. +.++|..|..+|.++...-...- ........++.+...
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~ 225 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999887542111111112345677788887752 56899999999998875322110 000000112233333
Q ss_pred hcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhh
Q 000184 290 TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLI 369 (1890)
Q Consensus 290 l~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~ 369 (1890)
+..+ +..++..++.+|..+..
T Consensus 226 ~~~~---------~~~vr~~a~~~l~~l~~-------------------------------------------------- 246 (876)
T 1qgr_A 226 TQCP---------DTRVRVAALQNLVKIMS-------------------------------------------------- 246 (876)
T ss_dssp TTCS---------SHHHHHHHHHHHHHHHH--------------------------------------------------
T ss_pred cCCC---------CHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 3221 13344444444444332
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCc-cchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-----
Q 000184 370 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPL-LSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG----- 443 (1890)
Q Consensus 370 i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~----- 443 (1890)
..+. ....+ ....++.++..+.+.++.++..++..+..++....
T Consensus 247 -----------------------------~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~ 296 (876)
T 1qgr_A 247 -----------------------------LYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 296 (876)
T ss_dssp -----------------------------HSGGGCHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HhHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhh
Confidence 1111 11111 12345556666666677778777777777664310
Q ss_pred ----------------hhhHHHHhcCcHHHHHHhhC-------CCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHH
Q 000184 444 ----------------SLWRALQGREGIQLLISLLG-------LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPL 500 (1890)
Q Consensus 444 ----------------~~~~~i~~~g~i~~Lv~lL~-------~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~L 500 (1890)
...+... ...++.+++.+. +.+..++..|..+|..++....+ .+. ...++.+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l 371 (876)
T 1qgr_A 297 ASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFI 371 (876)
T ss_dssp HHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHH
T ss_pred hccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHH
Confidence 0000000 234677777775 23567888999999988753222 111 1356667
Q ss_pred HHhccCCCHHHHHHHHHHHHHHhcCCh-H-HHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC--------
Q 000184 501 VQILESGSAKAKEDSASILRNLCNHSE-D-IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------- 570 (1890)
Q Consensus 501 v~lL~~~~~~~~e~a~~aL~~L~~~~~-~-~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~-------- 570 (1890)
...+.+.+..+|+.++++|+.++.... + ....+ ...+|.++..+++.++.++..|+++|.+++....+
T Consensus 372 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l 449 (876)
T 1qgr_A 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence 777888899999999999999997532 2 22222 34789999999999999999999999999875321
Q ss_pred -CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcC------------chHHHHHhhhhcchHHHHHHHhcCC---CHHHHH
Q 000184 571 -ATISQLTALLTSDLPESKVYVLDALKSMLSVVS------------FSDILREGSAANDAVETMIKILSST---KEETQA 634 (1890)
Q Consensus 571 -~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~------------~~~~~~~~~~~~~~i~~Lv~lL~s~---~~~~~~ 634 (1890)
..++.++..+.+. +.++..+..+++.+..... ..+.+... -...++.|..++... +..++.
T Consensus 450 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~il~~L~~~l~~~~~~~~~~r~ 526 (876)
T 1qgr_A 450 APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSS--FELIVQKLLETTDRPDGHQNNLRS 526 (876)
T ss_dssp HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTT--HHHHHHHHHHHTTSCSSCSTTHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHh--HHHHHHHHHHHHhCcCcchhhHHH
Confidence 3445566667664 7788889999998875421 00000000 123478888888654 357888
Q ss_pred HHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhc----------CCC-----HHHHHHHHHHHHHHHccCc-hhhHHHHH
Q 000184 635 KSASALAGIFETRKDLRESSIAVKTLWSVMKLLD----------VGS-----ECILVEASRCLAAIFLSVR-ENREVAAV 698 (1890)
Q Consensus 635 ~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~----------~~~-----~~v~~~a~~aL~~L~~~~~-~~~~~~~~ 698 (1890)
.+..++..++........ -.....+|.++..+. +.+ ++++..++.++..++...+ +... ..
T Consensus 527 ~~~~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~ 603 (876)
T 1qgr_A 527 SAYESLMEIVKNSAKDCY-PAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL--QI 603 (876)
T ss_dssp HHHHHHHHHHHTCCSTTH-HHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH--TT
T ss_pred HHHHHHHHHHHHCchhhH-HHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh--HH
Confidence 899999999876433211 122345666665553 222 3456778889988876553 2111 11
Q ss_pred hCCChHHHHHHhCCCC--HHHHHHHHHHHHHHhcCc-hHHHHHHhcCcHHHHHHHHhcC-CcchHHHHHHHHHHHhhcCc
Q 000184 699 ARDALSPLVVLAGSPV--LEVAEQATCALANLILDS-EVSEKAIAEEIILPATRVLCEG-TISGKTLAAAAIARLLHSRK 774 (1890)
Q Consensus 699 ~~~~v~~Lv~ll~~~~--~ev~~~aa~aL~nL~~~~-~~~~~~~~~~~v~~L~~ll~~~-~~~~~~~aa~aL~~L~~~~~ 774 (1890)
-...++.++.++++.. ..+++.+..++.+++... .....++ ..+++.+...+++. +..++..+.+++..+.....
T Consensus 604 ~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 604 SDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 2346777888888764 378999999999987321 1111222 35778889999887 66799999999999986433
Q ss_pred cchhHhhhhhhhccHHHHHHHhhcc--CcccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCC--
Q 000184 775 IDYTITDCVNRAGTVLALVSFLESA--SGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT-- 850 (1890)
Q Consensus 775 ~~~~~~~~~~~~g~l~~li~~l~~~--~~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-- 850 (1890)
. .+..+ ....++.+++.+.+. +.++. ..++.++.+++...+.. + .-..+..++.|.+.+....
T Consensus 683 ~--~~~~~--~~~i~~~l~~~l~~~~~~~~~~-~~~~~~l~~i~~~~g~~-~-------~~~l~~~~~~l~~~~~~~~~~ 749 (876)
T 1qgr_A 683 S--NIIPF--CDEVMQLLLENLGNENVHRSVK-PQILSVFGDIALAIGGE-F-------KKYLEVVLNTLQQASQAQVDK 749 (876)
T ss_dssp G--GGHHH--HHHHHHHHHHHHTCTTSCGGGH-HHHHHHHHHHHHHHGGG-G-------GGGHHHHHHHHHHHHTCCCCT
T ss_pred H--hhhhh--HHHHHHHHHHHhCCccccHHhh-HHHHHHHHHHHHHhchh-H-------HHHHHHHHHHHHHHHhccCCC
Confidence 1 12221 236777788888873 34566 88999999887644320 1 1123456666676665442
Q ss_pred --h-------hHHHHHHHHHHHHhcCCccchhhhhc-------cCccchH---HHHHHHhhcC--CCceeecchhHHHHH
Q 000184 851 --P-------LLQDKAIEILSRLCRDQPAVLGDEVT-------GASGCIS---SIARRVISCT--NPKVKIGGAALLICA 909 (1890)
Q Consensus 851 --~-------~~~~~a~~~L~~l~~~~~~~~g~~i~-------~~~~~~~---~~~~~~l~s~--~~~~r~~~~~~~~~~ 909 (1890)
+ .+++.+.+.+..++.. +|.... .-..... .++....+++ ++.+|..|+..+..+
T Consensus 750 ~d~~~~~~~~~~r~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l 825 (876)
T 1qgr_A 750 SDYDMVDYLNELRESCLEAYTGIVQG----LKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDL 825 (876)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHH----HHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH----HccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 2 6777777766655321 111000 0001111 2222333555 668998888888887
Q ss_pred hhhchhhHHHhhhcccc-chhhHHHHHH-HHHhhcCCCCcCCCCChhHHHHHhhhhhhcc
Q 000184 910 AKVNHQRIVEDLNHSNS-CAPLIQSLVT-MLSVVEASPLRNQGNDDKEAISIYRYTSEEA 967 (1890)
Q Consensus 910 a~~~~~~~~~~~~~~~~-~~~~i~~Lv~-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 967 (1890)
++.-..+ .+ ..+ ....++.|+. .+.+.+. ..+..|..++..+++.+
T Consensus 826 ~~~~~~~---~~--~~~~~~~~i~~ll~~~l~~~~~-------~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 826 CTAFGKD---VL--KLVEARPMIHELLTEGRRSKTN-------KAKTLARWATKELRKLK 873 (876)
T ss_dssp HHHHCTH---HH--HHHHTSHHHHHHHHHHHHCSCH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHhCcH---HH--HHHHhcHHHHHHHHHHhhcCCH-------hHHHHHHHHHHHHHHhh
Confidence 6541110 00 111 3455777777 7754432 23566666666665553
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.61 E-value=5.8e-13 Score=165.80 Aligned_cols=442 Identities=13% Similarity=0.090 Sum_probs=295.6
Q ss_pred ChHHHHHhhcCCC-HHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCC
Q 000184 107 CIPPLLGLLKSSS-AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 185 (1890)
Q Consensus 107 ~i~~Lv~lL~~~~-~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~ 185 (1890)
.|+.|+..+.+.. .+-|+.|...|+.++. ++. .-+..+++|.|+..|+... .|.++-..++.+|.++....
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk----~y~---~~Vg~~~l~~li~~L~~d~-~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSK----KYR---LEVGIQAMEHLIHVLQTDR-SDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTT----TTT---THHHHHTHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHH----HhH---HHhhhhhHHHHHHHHhccc-ccHHHHHHHHHHHHHHhCCC
Confidence 4566666676544 6788999999999987 332 3466788999999999865 55566667888887765433
Q ss_pred hh---------------HHH--H-HHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCch-hhhHhh-ccchHHHHHH
Q 000184 186 EG---------------FWA--A-TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-VCSRVL-AADATKQLLK 245 (1890)
Q Consensus 186 ~~---------------~~~--~-i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~-~~~~i~-~~g~i~~Lv~ 245 (1890)
+. .|- . +.+.++|+.|+.+|++.+-.+|.++..+|..++...+. ....+. ..++++.|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 21 111 1 34678999999999999999999999999999977766 555566 4699999999
Q ss_pred HHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhh
Q 000184 246 LLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVI 325 (1890)
Q Consensus 246 lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i 325 (1890)
+|...+ +.+|-.+...|.+|+.++++.++.+.-.|+++.|+.++.... +..+..+.+.|+..|.|+..
T Consensus 174 lL~d~r-E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg-----~~~Ggivv~DCL~ll~nLLr------ 241 (651)
T 3grl_A 174 LLADSR-EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEG-----NSDGGIVVEDCLILLQNLLK------ 241 (651)
T ss_dssp GGGCSS-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT-----GGGSHHHHHHHHHHHHHHHT------
T ss_pred HHhCch-HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcC-----CCccchhHHHHHHHHHHHHh------
Confidence 999864 579999999999999999999999999999999999996532 11233445555555555443
Q ss_pred hhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccch
Q 000184 326 SSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSI 405 (1890)
Q Consensus 326 ~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~ 405 (1890)
.|+.++.
T Consensus 242 -------------------------------------------------------------------------~N~sNQ~ 248 (651)
T 3grl_A 242 -------------------------------------------------------------------------NNNSNQN 248 (651)
T ss_dssp -------------------------------------------------------------------------TCHHHHH
T ss_pred -------------------------------------------------------------------------cCHHHHH
Confidence 3444555
Q ss_pred hhhhcCcHHHHHHHhcCCCH------HHHHH---HHHHHHHhhcc------CchhhHHHHhcCcHHHHHHhhCCC--CHH
Q 000184 406 KLENSEAKRLLVGLITMATN------EVQEE---LVRALLKLCNN------EGSLWRALQGREGIQLLISLLGLS--SEQ 468 (1890)
Q Consensus 406 ~l~~~g~i~~Lv~lL~~~~~------~v~~~---a~~aL~~L~~~------~~~~~~~i~~~g~i~~Lv~lL~~~--~~~ 468 (1890)
.+.+.++++.|..+++.+.. ....+ ++.+++-++.. ...+...+.+.|+++.|++++.++ ...
T Consensus 249 ~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~ 328 (651)
T 3grl_A 249 FFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPAD 328 (651)
T ss_dssp HHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHH
T ss_pred HHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHH
Confidence 56666666666665543211 11122 34444444443 234677888999999999998876 678
Q ss_pred HHHHHHHHHHHcccCChhcHHHHHhcC-----CcHHHHHh----ccCC-CHHHHHHHHHHHHHHhcCChHHHHHHHhC--
Q 000184 469 QQECSVALLCLLSNENDDSKWAITAAG-----GIPPLVQI----LESG-SAKAKEDSASILRNLCNHSEDIRACVESA-- 536 (1890)
Q Consensus 469 v~~~A~~aL~nL~~~~~~~~~~i~~~g-----~i~~Lv~l----L~~~-~~~~~e~a~~aL~~L~~~~~~~r~~i~~~-- 536 (1890)
++..|..+++.+.++++.++..+.+.. ..|.++.+ +.+. ...+|-.++.++......+++.+..+...
T Consensus 329 i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~ll 408 (651)
T 3grl_A 329 ILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLL 408 (651)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcC
Confidence 999999999999999999999998654 44555554 4443 67889999999999999888888777653
Q ss_pred --------CCH---HHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhh-hcCc
Q 000184 537 --------DAV---PALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLS-VVSF 604 (1890)
Q Consensus 537 --------g~i---~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~-~~~~ 604 (1890)
..+ ..|..-+-+.++-..-.|+.+|.++..+++ +.|+.+.+.- +.. ....
T Consensus 409 p~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~----------------~~K~~~l~v~--l~~~~ge~ 470 (651)
T 3grl_A 409 PSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENA----------------TQKEQLLRVQ--LATSIGNP 470 (651)
T ss_dssp SCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCH----------------HHHHHHTTCB--CCCCTTCC
T ss_pred CcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCH----------------HHHHHHHhCc--ccccCCCC
Confidence 111 123333444555444557777777765332 1222111100 000 0000
Q ss_pred hHHHHHhhhhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcChhHHHHHHHcC-chHHHHHhhc
Q 000184 605 SDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVK-TLWSVMKLLD 668 (1890)
Q Consensus 605 ~~~~~~~~~~~~~i~~Lv~lL~-s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g-~i~~Lv~lL~ 668 (1890)
+ ---++.+..+|. +.++.++-.=...|+...+++++....+...+ .++.|+..+.
T Consensus 471 ~---------vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 471 P---------VSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIA 527 (651)
T ss_dssp C---------CBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred c---------ccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHH
Confidence 0 112444445443 34565555555566666666777666677666 5999998874
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.59 E-value=1.9e-12 Score=170.24 Aligned_cols=517 Identities=12% Similarity=0.077 Sum_probs=342.3
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHH-HhhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCcc
Q 000184 64 SQAVPVLVSLLRSGSLAVKIQAATVLG-SLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYV 142 (1890)
Q Consensus 64 ~g~v~~Lv~lL~~~~~~~~~~aa~~L~-~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~ 142 (1890)
.|.+..+-+.|++++...|.++..-+. .+..+.+. ..+.+.+++++.+++.+.|..+.-++..+... +..
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~---~~e 82 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS---QPD 82 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH---SHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc---Cch
Confidence 477888999999999877777655444 34344432 13577888999999999998887888777661 111
Q ss_pred ccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000184 143 GSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 222 (1890)
Q Consensus 143 ~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~ 222 (1890)
+ ..-+++.+. +...+.++.++..++.+|.++. .++.... .++.+.++|.++++.+|..|+.+|.+
T Consensus 83 ----~-~~l~~n~l~---kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~ 147 (591)
T 2vgl_B 83 ----M-AIMAVNSFV---KDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAK 147 (591)
T ss_dssp ----H-HHTTHHHHG---GGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred ----H-HHHHHHHHH---HHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 0 011223333 3334467778988888888875 3333332 36789999999999999999999999
Q ss_pred HhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhh
Q 000184 223 MMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEY 302 (1890)
Q Consensus 223 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~ 302 (1890)
+...+++. +.+.+.++.+.++|.+ .+..++..|+.+|..++..+++....-...+.+..|+..+...
T Consensus 148 i~~~~p~~---~~~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~--------- 214 (591)
T 2vgl_B 148 LHDINAQM---VEDQGFLDSLRDLIAD-SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC--------- 214 (591)
T ss_dssp HHHSSCCC---HHHHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC---------
T ss_pred HHhhChhh---cccccHHHHHHHHhCC-CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC---------
Confidence 98755432 2235778999999975 4778999999999999886542210000112355566665433
Q ss_pred hHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCC
Q 000184 303 AQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL 382 (1890)
Q Consensus 303 ~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~ 382 (1890)
++..|-..+.+|.+++...+.. ...+.+.+..++++.+
T Consensus 215 ~~~~q~~il~~l~~l~~~~~~~------------------------------------------~~~~l~~l~~~l~~~~ 252 (591)
T 2vgl_B 215 TEWGQIFILDCLSNYNPKDDRE------------------------------------------AQSICERVTPRLSHAN 252 (591)
T ss_dssp CHHHHHHHHHHHHTSCCCSHHH------------------------------------------HHHHHHHHTTCSCSST
T ss_pred CchHHHHHHHHHHHhCCCChHH------------------------------------------HHHHHHHHHHHHcCCC
Confidence 3556667777776655311100 0134455666666555
Q ss_pred ChHHHHHHHHHHHHhhC----CCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHH
Q 000184 383 PFLVQERTIEALASLYG----NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLL 458 (1890)
Q Consensus 383 ~~~~~~~a~~aL~~L~~----~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~L 458 (1890)
+ .++..|+.++..+.. +++....+. ....+.|+.++. +++.+|..++.+|..+...++.... ..+..+
T Consensus 253 ~-~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~ 324 (591)
T 2vgl_B 253 S-AVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVF 324 (591)
T ss_dssp T-HHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTT
T ss_pred h-HHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhh
Confidence 4 478999999999863 333322221 345577777664 7899999999999999876554211 112222
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCC
Q 000184 459 ISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADA 538 (1890)
Q Consensus 459 v~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~ 538 (1890)
.... +++..++..++..|.+++. +.+... .++.|..++.+.+.+.|..+++++++++...+... ...
T Consensus 325 ~~~~-~d~~~Ir~~al~~L~~l~~--~~nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~ 391 (591)
T 2vgl_B 325 FVKY-NDPIYVKLEKLDIMIRLAS--QANIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERC 391 (591)
T ss_dssp SCCT-TSCHHHHHHHHHHHHHTCC--SSTHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHH
T ss_pred eecc-CChHHHHHHHHHHHHHHCC--hhhHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHH
Confidence 2222 4458999999999999984 444333 45667788888899999999999999998654322 236
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchH
Q 000184 539 VPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV 618 (1890)
Q Consensus 539 i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i 618 (1890)
++.|++++.+....+...+..++.++....+. ....++
T Consensus 392 v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~------------------------------------------~~~~~v 429 (591)
T 2vgl_B 392 VSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN------------------------------------------KYESII 429 (591)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS------------------------------------------SCCTTH
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHCcc------------------------------------------hHHHHH
Confidence 78999999988888887777777776542211 012347
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHH
Q 000184 619 ETMIKILSS-TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 697 (1890)
Q Consensus 619 ~~Lv~lL~s-~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~ 697 (1890)
+.|.+.+.+ .++.++..++|+|+..+..-++. ...+..+++-+...++.++..++.++..+....++...
T Consensus 430 ~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~------~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~--- 500 (591)
T 2vgl_B 430 ATLCENLDSLDEPDARAAMIWIVGEYAERIDNA------DELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQ--- 500 (591)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH------HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTTH---
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHcccccccCH------HHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHH---
Confidence 777787764 57889999999999988764331 13345555555667889999999999999876553221
Q ss_pred HhCCChHHHHHHh-C-CCCHHHHHHHHHHHHHHhcCchH
Q 000184 698 VARDALSPLVVLA-G-SPVLEVAEQATCALANLILDSEV 734 (1890)
Q Consensus 698 ~~~~~v~~Lv~ll-~-~~~~ev~~~aa~aL~nL~~~~~~ 734 (1890)
..+..+++.. . +.+.|||.+|...+.-+..+++.
T Consensus 501 ---~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~ 536 (591)
T 2vgl_B 501 ---ELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVT 536 (591)
T ss_dssp ---HHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTH
T ss_pred ---HHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHH
Confidence 1244455543 4 46889999998776644444433
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.58 E-value=6.1e-13 Score=174.90 Aligned_cols=500 Identities=12% Similarity=0.110 Sum_probs=338.6
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHH-hhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHH
Q 000184 372 QTLVNQFKPRLPFLVQERTIEALAS-LYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ 450 (1890)
Q Consensus 372 ~~L~~ll~~~~~~~~~~~a~~aL~~-L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~ 450 (1890)
.-+.+.+++++... +..+..-+.. .....+. ..+.+.+++++.+++..+|+.+..++.+++..+++. +
T Consensus 16 ~~i~~~L~~~~~~~-k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~---~- 84 (591)
T 2vgl_B 16 FELKAELNNEKKEK-RKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM---A- 84 (591)
T ss_dssp HHHHHHTTSSCHHH-HHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH---H-
T ss_pred HHHHHHHcCCCHHH-HHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH---H-
Confidence 34566666665443 4343333333 3333221 245677888999999999999988888887654332 1
Q ss_pred hcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHH
Q 000184 451 GREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIR 530 (1890)
Q Consensus 451 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r 530 (1890)
.-.+..+.+-|+++++.+|..|..+|+++. .++.... .++.+.+++.+.++.+|..|++++.+++..+++.-
T Consensus 85 -~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 85 -IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp -HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred -HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 135678888899999999999999999997 3554433 35779999999999999999999999998655422
Q ss_pred HHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCC--------CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhc
Q 000184 531 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT--------ATISQLTALLTSDLPESKVYVLDALKSMLSVV 602 (1890)
Q Consensus 531 ~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~--------~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 602 (1890)
.+.+.++.|..++.+.++.++..|+.+|..++.+... ..+..++..+.+.++-.+...+++++.+ .
T Consensus 157 ---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l---~ 230 (591)
T 2vgl_B 157 ---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY---N 230 (591)
T ss_dssp ---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS---C
T ss_pred ---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh---C
Confidence 2346789999999999999999999999999986542 2366677777777766666666655433 3
Q ss_pred CchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc---ChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHH
Q 000184 603 SFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET---RKDLRESSIAVKTLWSVMKLLDVGSECILVEAS 679 (1890)
Q Consensus 603 ~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~---~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~ 679 (1890)
+.++.. ....++.+..++++.++.++..|++++.++... +++... .......++|+.++. ++++++..++
T Consensus 231 ~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~-~~~~~~~~~L~~L~~-~d~~vr~~aL 303 (591)
T 2vgl_B 231 PKDDRE-----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYN-MLLKKLAPPLVTLLS-GEPEVQYVAL 303 (591)
T ss_dssp CCSHHH-----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHH-HHHHHTHHHHHHHTT-SCHHHHHHHH
T ss_pred CCChHH-----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHH-HHHHHHHHHHHHHhc-CCccHHHHHH
Confidence 322211 134588888899999999999999999999752 233322 223456788887765 7889999999
Q ss_pred HHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchH
Q 000184 680 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGK 759 (1890)
Q Consensus 680 ~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 759 (1890)
.++..+....++.. . ..+..+..+. +.+..+|..+...|.++...... ..++..|..++++.+.+.+
T Consensus 304 ~~l~~i~~~~p~~~-----~-~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~~nv------~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 304 RNINLIVQKRPEIL-----K-QEIKVFFVKY-NDPIYVKLEKLDIMIRLASQANI------AQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHCCSTT-----T-TCTTTTSCCT-TSCHHHHHHHHHHHHHTCCSSTH------HHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHhChHHH-----H-HHHHhheecc-CChHHHHHHHHHHHHHHCChhhH------HHHHHHHHHHHhcCCHHHH
Confidence 99999986544321 1 1222222222 44488999999999998744322 2467778888888888899
Q ss_pred HHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCCh
Q 000184 760 TLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSI 839 (1890)
Q Consensus 760 ~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l 839 (1890)
..+++++.++....+.. ....+..|++++...+..+. .+++.++.++.+..+.. ....+
T Consensus 371 ~~~v~aI~~la~~~~~~--------~~~~v~~Ll~ll~~~~~~v~-~e~i~~l~~ii~~~p~~------------~~~~v 429 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVEQS--------AERCVSTLLDLIQTKVNYVV-QEAIVVIRDIFRKYPNK------------YESII 429 (591)
T ss_dssp HHHHHHHHHHHTTCHHH--------HHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHSCSS------------CCTTH
T ss_pred HHHHHHHHHHHHhChhH--------HHHHHHHHHHHHcccchHHH-HHHHHHHHHHHHHCcch------------HHHHH
Confidence 99999999998654321 24678899999998877777 77888999988765431 24567
Q ss_pred hhHHhHhhc-CChhHHHHHHHHHHHHhcCCccchhhhhccCccchHHHHHHHhhc---CCCceeecchhHHHHHhhhchh
Q 000184 840 TPIVSSIAD-ATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISC---TNPKVKIGGAALLICAAKVNHQ 915 (1890)
Q Consensus 840 ~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~g~~i~~~~~~~~~~~~~~l~s---~~~~~r~~~~~~~~~~a~~~~~ 915 (1890)
..|.+.+.+ ..+.++..+..+|+.|.. .+.. ...+++.+++. +++.+|..+.-++.++..-
T Consensus 430 ~~L~~~l~~~~~~~~~~~~~wilGey~~--------~~~~----~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~--- 494 (591)
T 2vgl_B 430 ATLCENLDSLDEPDARAAMIWIVGEYAE--------RIDN----ADELLESFLEGFHDESTQVQLTLLTAIVKLFLK--- 494 (591)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCT--------TCTT----HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHcccc--------cccC----HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc---
Confidence 778888864 568889999999998833 2222 23445555543 4567776555555554321
Q ss_pred hHHHhhhccccchhhHHHHHHHHHhhcCCCCcCCCCChhHHHHHhhhhh
Q 000184 916 RIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTS 964 (1890)
Q Consensus 916 ~~~~~~~~~~~~~~~i~~Lv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 964 (1890)
.++ .....+..+.+....+. .+.+.+..|...++.|.
T Consensus 495 -----~p~--~~~~~i~~ll~~~~~d~-----~d~evrdRA~~y~~ll~ 531 (591)
T 2vgl_B 495 -----KPS--ETQELVQQVLSLATQDS-----DNPDLRDRGYIYWRLLS 531 (591)
T ss_dssp -----CCS--TTHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHTTTT
T ss_pred -----Cch--HHHHHHHHHHHHhhhcC-----CChHHHHHHHHHHHHHC
Confidence 111 11233444444332211 23455677777777643
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.54 E-value=3.6e-13 Score=159.83 Aligned_cols=259 Identities=14% Similarity=0.070 Sum_probs=205.7
Q ss_pred hhhcCcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchh
Q 000184 1238 ESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSR 1317 (1890)
Q Consensus 1238 ~~~~g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~ 1317 (1890)
..+.++++.|+..|++++..+|..|+++|+++. ..+++++|+.+|++.+..+|..|+.+|+++.......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 346689999999999999999999999999875 3457999999999999999999999999987522111
Q ss_pred hHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhC-ChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhc
Q 000184 1318 ALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG-NTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKL 1396 (1890)
Q Consensus 1318 ~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L 1396 (1890)
. ..++.|...+..+++..++..+..+|+.+.. ++. .....++.|+..+.++++.+|..|+.+|+++
T Consensus 89 ~--------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 89 D--------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp H--------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred h--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc-----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 1 1233344333334577899999999998752 111 1235678899999999999999999999999
Q ss_pred cCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHH
Q 000184 1397 VDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELL 1476 (1890)
Q Consensus 1397 ~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l 1476 (1890)
.. .++++.|..+++++++.+|..|+.+|++++...+. +++.|+++|.++++.++..++.++
T Consensus 156 ~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~---------~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 156 ND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH---------HHHHHHHHhcCCCHHHHHHHHHHH
Confidence 63 35799999999999999999999999999755432 678999999999999999999888
Q ss_pred HHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccC-CCCHHHH
Q 000184 1477 RILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLD-SPAPAVQ 1555 (1890)
Q Consensus 1477 ~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~-s~~~~vq 1555 (1890)
+.+.. ...++.|+.++.+ ++++..++.+|+++ .....++.|..++. ++++++.
T Consensus 217 ~~~~~----------~~~~~~L~~~l~d----~~vr~~a~~aL~~i------------~~~~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 217 SYRKD----------KRVLSVLCDELKK----NTVYDDIIEAAGEL------------GDKTLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHTTC----------GGGHHHHHHHHTS----SSCCHHHHHHHHHH------------CCGGGHHHHHHHHTTSSCCHHH
T ss_pred HHhCC----------HhhHHHHHHHhcC----ccHHHHHHHHHHhc------------CchhhhHHHHHHHhcCCCcHHH
Confidence 77642 3469999999986 34889999999998 55678999999997 4677888
Q ss_pred HHHHHHHHH
Q 000184 1556 QLAAELLSH 1564 (1890)
Q Consensus 1556 ~~A~~aL~~ 1564 (1890)
..+...|.+
T Consensus 271 ~~~~~~l~~ 279 (280)
T 1oyz_A 271 TSAIDKLKR 279 (280)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 888877653
No 54
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.51 E-value=5.9e-13 Score=158.00 Aligned_cols=257 Identities=11% Similarity=0.049 Sum_probs=204.7
Q ss_pred hhcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCCh
Q 000184 1280 SARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNT 1359 (1890)
Q Consensus 1280 ~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~ 1359 (1890)
++..+++.|+..|.+++..+|..|+.+|++++. .++++.|+++|.+. +..++..+..+|+.+...+
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~ 85 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------------QDAVRLAIEFCSDK-NYIRRDIGAFILGQIKICK 85 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------------HHHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCT
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-------------chHHHHHHHHHcCC-CHHHHHHHHHHHHHhcccc
Confidence 456789999999999999999999999999873 24788999999874 6789999999999886443
Q ss_pred hhHHHHHhhCchHHHH-HHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHh
Q 000184 1360 RIRSTVAAARCVEPLV-SLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKL 1437 (1890)
Q Consensus 1360 ~~~~~~~~~~~i~~Lv-~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l 1437 (1890)
.... ..++.|. .++.++++.+|..++.+|++++ .++.... .+++.|..+++++++.+|..|+.+|+++
T Consensus 86 ~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 86 KCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp TTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred ccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 2111 1222333 2457889999999999999997 3332222 3478999999999999999999999999
Q ss_pred ccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHH
Q 000184 1438 GKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQ 1517 (1890)
Q Consensus 1438 ~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~ 1517 (1890)
+... +++.|+++|.+++..++..++.+++.+... ....++.|+.++.+++ +.+|..|+.
T Consensus 156 ~~~~-----------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~~--~~vR~~A~~ 214 (280)
T 1oyz_A 156 NDKA-----------TIPLLINLLKDPNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDKN--EEVRIEAII 214 (280)
T ss_dssp ---C-----------CHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCSC--HHHHHHHHH
T ss_pred CCHH-----------HHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCCC--HHHHHHHHH
Confidence 8654 899999999999999999999998876421 2346899999999877 999999999
Q ss_pred HHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcC-CCHHHH
Q 000184 1518 VLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGS-GIHILQ 1596 (1890)
Q Consensus 1518 aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s-~~~~v~ 1596 (1890)
+|+++ .....++.|+.+|++++ +|..|+++|+.+.. ..+++.|..++.+ .++++.
T Consensus 215 aL~~~------------~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 215 GLSYR------------KDKRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHHHT------------TCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHH
T ss_pred HHHHh------------CCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHH
Confidence 99998 56778999999998865 89999999998865 3678999999964 677888
Q ss_pred HHHHHHHHH
Q 000184 1597 QRAVKALVS 1605 (1890)
Q Consensus 1597 ~~A~~aL~~ 1605 (1890)
..++.+|.+
T Consensus 271 ~~~~~~l~~ 279 (280)
T 1oyz_A 271 TSAIDKLKR 279 (280)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 888877754
No 55
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.48 E-value=1.1e-10 Score=153.72 Aligned_cols=521 Identities=13% Similarity=0.050 Sum_probs=330.8
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhH
Q 000184 21 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRV 100 (1890)
Q Consensus 21 ~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~ 100 (1890)
++..+-+.+++. +...|..++.++..+--.+.. -..+.+..++++.+.+-+.|.-+--++..++.++..
T Consensus 35 e~~~ir~~l~~~--~~~~k~~~l~kli~~~~~G~d-------~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e-- 103 (618)
T 1w63_A 35 ECAAIRSSFREE--DNTYRCRNVAKLLYMHMLGYP-------AHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQD-- 103 (618)
T ss_dssp HHHHHHHHHTTT--CTTTHHHHHHHHHHHHHTTCC-------CGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHH--
T ss_pred HHHHHHHHhhCC--CHHHHHHHHHHHHHHHHcCCC-------CcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcH--
Confidence 344444455443 345677778888776654422 135677888899999988888777788888755432
Q ss_pred HHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHHH
Q 000184 101 KVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRN 180 (1890)
Q Consensus 101 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~~ 180 (1890)
++. -.+..|.+-|.++++..+..|+++|.++.. ++ + ...++|.+.+.++. .++.++..++.++.+
T Consensus 104 -~~~-l~in~l~kDL~~~n~~vr~lAL~~L~~i~~---~~------~-~~~l~~~l~~~L~~---~~~~VRk~A~~al~~ 168 (618)
T 1w63_A 104 -VHL-LMTNCIKNDLNHSTQFVQGLALCTLGCMGS---SE------M-CRDLAGEVEKLLKT---SNSYLRKKAALCAVH 168 (618)
T ss_dssp -HHH-HHHHHHHHHHSCSSSHHHHHHHHHHHHHCC---HH------H-HHHHHHHHHHHHHS---CCHHHHHHHHHHHHH
T ss_pred -HHH-HHHHHHHHhcCCCCHhHHHHHHHHHHhcCC---HH------H-HHHHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 111 246788888999999999999999988865 11 2 23456777777765 568899999999999
Q ss_pred hccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcC-----------
Q 000184 181 LSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGS----------- 249 (1890)
Q Consensus 181 L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~----------- 249 (1890)
+....++. ++ +.++.+..+|.+.++.++..|+.+|..++..+++....+ ...++.++++|.+
T Consensus 169 l~~~~p~~----v~-~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~ 241 (618)
T 1w63_A 169 VIRKVPEL----ME-MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHD 241 (618)
T ss_dssp HHHHCGGG----GG-GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTC
T ss_pred HHHHChHH----HH-HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCcccc
Confidence 98654432 22 678889999999999999999999988875543221222 3567888877763
Q ss_pred ---CCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhh
Q 000184 250 ---GNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVIS 326 (1890)
Q Consensus 250 ---~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~ 326 (1890)
..++-.+.....+|..+...+++.... .++.|..++..... ....+..+...|+.+
T Consensus 242 ~~~~~~~~~q~~il~~L~~l~~~~~~~~~~-----~~~~L~~l~~~~~~---~~~~~~aV~~ea~~~------------- 300 (618)
T 1w63_A 242 VSGISDPFLQVRILRLLRILGRNDDDSSEA-----MNDILAQVATNTET---SKNVGNAILYETVLT------------- 300 (618)
T ss_dssp SSSSSCHHHHHHHHHHHHHHTTTCHHHHHT-----THHHHHHHHHTSCC---SSTHHHHHHHHHHHH-------------
T ss_pred ccCCCCChHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHHhcccc---ccchHHHHHHHHHHH-------------
Confidence 135677888888888888765543221 22333333321100 000122333333333
Q ss_pred hhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchh
Q 000184 327 SLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIK 406 (1890)
Q Consensus 327 ~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~ 406 (1890)
+..+..++..
T Consensus 301 -------------------------------------------------------------------i~~l~~~~~l--- 310 (618)
T 1w63_A 301 -------------------------------------------------------------------IMDIKSESGL--- 310 (618)
T ss_dssp -------------------------------------------------------------------HHHSCCCHHH---
T ss_pred -------------------------------------------------------------------HHhcCCCHHH---
Confidence 3333221111
Q ss_pred hhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChh
Q 000184 407 LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDD 486 (1890)
Q Consensus 407 l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~ 486 (1890)
. ..++..|..++.++++.+|..|+.+|..+...++. .+. ...+.++.++.+++..++..|..+|..++. ..
T Consensus 311 -~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~--~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~ 381 (618)
T 1w63_A 311 -R-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ--RHRSTIVDCLKDLDVSIKRRAMELSFALVN--GN 381 (618)
T ss_dssp -H-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG--GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SS
T ss_pred -H-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH--HHHHHHHHHccCCChhHHHHHHHHHHHHcc--cc
Confidence 1 13456677778888889999999999988875432 222 456788889999999999999999999984 33
Q ss_pred cHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHh
Q 000184 487 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS-EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 565 (1890)
Q Consensus 487 ~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~ 565 (1890)
+... .++.|...+.+.+.+.+..++.+++.++... +...+ .++.|+++++.....++..+...+..+.
T Consensus 382 nv~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii 450 (618)
T 1w63_A 382 NIRG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLI 450 (618)
T ss_dssp STHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred cHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 3333 3477888888889999999999999999743 23333 3577888887755444444444444433
Q ss_pred cCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 000184 566 HKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS--TKEETQAKSASALAGI 643 (1890)
Q Consensus 566 ~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s--~~~~~~~~A~~aL~~L 643 (1890)
.. .|+.+. .+++.|++++.+ .++.....++|+|+..
T Consensus 451 ~~----------------~p~l~~--------------------------~~v~~L~~~l~~~~~~~~~~~~~~wilGEy 488 (618)
T 1w63_A 451 TN----------------SVEMHA--------------------------YTVQRLYKAILGDYSQQPLVQVAAWCIGEY 488 (618)
T ss_dssp HH----------------SCSTHH--------------------------HHHHHHHHHHHHCCSCSHHHHHHHHHHHHH
T ss_pred hc----------------ChhHHH--------------------------HHHHHHHHHHhcccccHHHHHHHHHHHhhh
Confidence 21 112211 135667777654 3445556789999998
Q ss_pred hhcChh-HHH-----HHHHcCchHHHHHhhc--CCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCH
Q 000184 644 FETRKD-LRE-----SSIAVKTLWSVMKLLD--VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVL 715 (1890)
Q Consensus 644 ~~~~~~-~~~-----~~~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ 715 (1890)
+..-.+ ..+ .+....+++.|..++. ..++.++..++.++..++...++.... + ...|-....+.+.
T Consensus 489 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~-l-----~~~L~~~~~~~d~ 562 (618)
T 1w63_A 489 GDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNR-I-----KKVVSIYGSSIDV 562 (618)
T ss_dssp HHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHH-H-----HHHHHHHTTCSCH
T ss_pred HHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHH-H-----HHHHHHhcCCCCH
Confidence 752100 000 0000124555666554 568899999999999998876532211 1 1223345678899
Q ss_pred HHHHHHHHHHHHHhcCch
Q 000184 716 EVAEQATCALANLILDSE 733 (1890)
Q Consensus 716 ev~~~aa~aL~nL~~~~~ 733 (1890)
|+|.+|...+.-+..+++
T Consensus 563 evrdRA~~y~~ll~~~~~ 580 (618)
T 1w63_A 563 ELQQRAVEYNALFKKYDH 580 (618)
T ss_dssp HHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCcHH
Confidence 999999987665555443
No 56
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.39 E-value=5.3e-11 Score=156.90 Aligned_cols=513 Identities=14% Similarity=0.056 Sum_probs=317.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH-HhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCC-hhhHH
Q 000184 1286 QPLVEILNTGLEREQHAAIAALVR-LLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGN-TRIRS 1363 (1890)
Q Consensus 1286 ~~Lv~lL~~~~~~~~~~A~~aL~~-L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~-~~~~~ 1363 (1890)
..+=..|++++...|..++.=|.. ...+.+... .....++++.+ ++...+...--.+..++.. ++.
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~~~---------~~~~vik~~~s-~~~~~Krl~Yl~~~~~~~~~~e~-- 104 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGYPAHF---------GQLECLKLIAS-QKFTDKRIGYLGAMLLLDERQDV-- 104 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCCGG---------GHHHHHHHHHS-SSHHHHHHHHHHHHHHCCCCHHH--
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCCcc---------hHHHHHHHHcC-CchHHHHHHHHHHHHHhCCCcHH--
Confidence 334445555555555555433333 333332211 23334566664 3556666655555665543 221
Q ss_pred HHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChh
Q 000184 1364 TVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPS 1443 (1890)
Q Consensus 1364 ~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~ 1443 (1890)
..-.+..|.+-|.++++.+|..|+++|+++.. ++..+ ..++.+..++.+.++.+|++|+.|++++....|+
T Consensus 105 ---~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~~~~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~ 175 (618)
T 1w63_A 105 ---HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SEMCR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE 175 (618)
T ss_dssp ---HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HHHHH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG
T ss_pred ---HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH
Confidence 12355677888889999999999999999974 33333 2478889999999999999999999999876655
Q ss_pred hHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhcc-------------CCChh
Q 000184 1444 CKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRS-------------EFGPD 1510 (1890)
Q Consensus 1444 ~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~-------------~~~~~ 1510 (1890)
.. .+.++.+.++|.+.+..|...+..++..++...... ...-.+.++.|+++|.+. ..+++
T Consensus 176 ~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 249 (618)
T 1w63_A 176 LM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPF 249 (618)
T ss_dssp GG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHH
T ss_pred HH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCCh
Confidence 33 257888889999888888888888887775432210 001235678888887641 12489
Q ss_pred hHHHHHHHHHHhhcCCCcccccccccCCchhhhhhcc------CCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHH
Q 000184 1511 GQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLL------DSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPL 1584 (1890)
Q Consensus 1511 v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL------~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~L 1584 (1890)
.|...+++|..+...+... .....+.|..++ ++.+..+...+++++..+...+... ..+++.|
T Consensus 250 ~q~~il~~L~~l~~~~~~~------~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~-----~~a~~~L 318 (618)
T 1w63_A 250 LQVRILRLLRILGRNDDDS------SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR-----VLAINIL 318 (618)
T ss_dssp HHHHHHHHHHHHTTTCHHH------HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH-----HHHHHHH
Confidence 9999999999986542211 122334444443 3345688999999999876533221 2467899
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhhchhhhcccchHH
Q 000184 1585 IRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQFSSEFYLEVPVAV 1664 (1890)
Q Consensus 1585 v~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~v~~ 1664 (1890)
.+++.+.++++|..|+.+|..++...|..+..+ ...++..+.+.|..+|. .++..+..+...+. .+.-+..
T Consensus 319 ~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~--~~~i~~~l~d~d~~Ir~----~alelL~~l~~~~n---v~~iv~e 389 (618)
T 1w63_A 319 GRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH--RSTIVDCLKDLDVSIKR----RAMELSFALVNGNN---IRGMMKE 389 (618)
T ss_dssp HHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGG--HHHHHHGGGSSCHHHHH----HHHHHHHHHCCSSS---THHHHHH
T ss_pred HHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHH--HHHHHHHccCCChhHHH----HHHHHHHHHccccc---HHHHHHH
Confidence 999999999999999999999998765545443 56777778776764544 35555555542111 1224688
Q ss_pred HHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHccC--CcHHHHHHHHHHH-hhchhhhhhhhccc
Q 000184 1665 LVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRSH--QCEETAARLLEVL-LNNGKIRESKATKS 1741 (1890)
Q Consensus 1665 Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~~--~~~~~a~~al~~L-~~~~~~r~~i~~~~ 1741 (1890)
|...+.+.+.++|..+..+++.++...+.... ..++.|+++|++. .+...+...+..+ ..++..|+.++.+.
T Consensus 390 L~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~-----~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L 464 (618)
T 1w63_A 390 LLYFLDSCEPEFKADCASGIFLAAEKYAPSKR-----WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRL 464 (618)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHH-----HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhCccHH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHH
Confidence 88888899999999999999999875433322 3467788888762 2333344444444 33566665554431
Q ss_pred cccccccc-cCChHHHHHHHHHHHHHhcchhhhhhhhhh---------cccccchHHHHHHhhcc-CCCHHHHHHHHHHH
Q 000184 1742 AILPLSQY-LLDPQTQAQQARLLATLALGDLFQNEGLAR---------SADAVSACRALVNVLEE-QPTEEMKVVAICAL 1810 (1890)
Q Consensus 1742 ~i~~L~~~-~~~~~~~~~~~~~la~l~~~~~~~~~~l~~---------~~~~~~~~~~Lv~lL~~-~~~~~~r~~A~~aL 1810 (1890)
+.-|..- ...+... ...|+++-+ ... +.. ........+.|-+++++ ..+.++|..+++|+
T Consensus 465 -~~~l~~~~~~~~~~~-~~~wilGEy-----~~~--i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~ 535 (618)
T 1w63_A 465 -YKAILGDYSQQPLVQ-VAAWCIGEY-----GDL--LVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAI 535 (618)
T ss_dssp -HHHHHHCCSCSHHHH-HHHHHHHHH-----HHH--HTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred -HHHHhcccccHHHHH-HHHHHHhhh-----HHH--hcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 1111110 1122222 244554433 211 100 00012356667777753 23799999999999
Q ss_pred HHhhcCCchhHHHHHhcCcHHHHHHHhCCCCCCchHHHHHHHHHHhccchhhHh
Q 000184 1811 QNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPETSVQAAMFVKLLFSNHTIQEY 1864 (1890)
Q Consensus 1811 ~~l~~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~ 1864 (1890)
..+....+..... ....|.....+.+.+.+--|...+++|..++.+++.
T Consensus 536 ~Kl~~~~~~~~~~-----l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~~~~~~ 584 (618)
T 1w63_A 536 MKLSTRFTCTVNR-----IKKVVSIYGSSIDVELQQRAVEYNALFKKYDHMRSA 584 (618)
T ss_dssp HHHHTTCSSCHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHhCcchHHH-----HHHHHHHhcCCCCHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9998444322111 122233334466667676788888888876655543
No 57
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.38 E-value=5.2e-12 Score=142.83 Aligned_cols=189 Identities=24% Similarity=0.261 Sum_probs=163.8
Q ss_pred hhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHH
Q 000184 1367 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL 1446 (1890)
Q Consensus 1367 ~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 1446 (1890)
....++.|+..|.++++.+|..|+.+|..+.. .++++.|+.++.++++.+|..|+.+|++++...
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~----- 81 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDER----- 81 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-----
Confidence 46789999999999999999999999999853 356899999999999999999999999998654
Q ss_pred HHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCC
Q 000184 1447 EMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHP 1526 (1890)
Q Consensus 1447 ~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~ 1526 (1890)
.++.|+++|.++++.++..++.+++.+.. .+.++.|+.++.+++ +.+|..++.+|+++
T Consensus 82 ------~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~---- 139 (211)
T 3ltm_A 82 ------AVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED--WFVRIAAAFALGEI---- 139 (211)
T ss_dssp ------GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS--HHHHHHHHHHHHHH----
T ss_pred ------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC--HHHHHHHHHHHHHc----
Confidence 78999999999998999989888877643 235899999999888 99999999999998
Q ss_pred CcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000184 1527 QCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSI 1606 (1890)
Q Consensus 1527 ~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l 1606 (1890)
.....++.|+.+|+++++.+|..|+++|+.+.. ..+++.|..+++++++.+|..|..+|.++
T Consensus 140 --------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 140 --------GDERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp --------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred --------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 566789999999999999999999999998864 45788999999999999999999999999
Q ss_pred hccC
Q 000184 1607 ALTW 1610 (1890)
Q Consensus 1607 ~~~~ 1610 (1890)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 8654
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.34 E-value=1.2e-11 Score=138.67 Aligned_cols=186 Identities=24% Similarity=0.279 Sum_probs=164.3
Q ss_pred hhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHH
Q 000184 1367 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL 1446 (1890)
Q Consensus 1367 ~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 1446 (1890)
..+..+.++..|.++++.+|..|+.+|..+.. .++++.|+.++.++++.+|..|+.+|+.++...
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~----- 76 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDER----- 76 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-----
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-----
Confidence 34567889999999999999999999999853 256899999999999999999999999998654
Q ss_pred HHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCC
Q 000184 1447 EMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHP 1526 (1890)
Q Consensus 1447 ~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~ 1526 (1890)
.++.|+++|.++++.++..++.+++.+.. ...++.|+.++.+++ +.+|..++.+|+++
T Consensus 77 ------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~---- 134 (201)
T 3ltj_A 77 ------AVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDED--WFVRIAAAFALGEI---- 134 (201)
T ss_dssp ------GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSS--HHHHHHHHHHHHHH----
T ss_pred ------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCC--HHHHHHHHHHHHHh----
Confidence 78999999999998899999888877643 235999999999887 99999999999998
Q ss_pred CcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000184 1527 QCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSI 1606 (1890)
Q Consensus 1527 ~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l 1606 (1890)
.....++.|+.+|+++++.+|..|+++|+.+.. ..+++.|..+++++++.+|..|..+|.++
T Consensus 135 --------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 135 --------GDERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp --------TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred --------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 567789999999999999999999999998853 35789999999999999999999999987
Q ss_pred h
Q 000184 1607 A 1607 (1890)
Q Consensus 1607 ~ 1607 (1890)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 5
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.30 E-value=4.3e-11 Score=135.24 Aligned_cols=154 Identities=27% Similarity=0.319 Sum_probs=113.0
Q ss_pred cCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCC
Q 000184 1409 HGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKG 1488 (1890)
Q Consensus 1409 ~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~ 1488 (1890)
.+.++.|+.+|+++++.+|..|+.+|+.++... .++.|+++|.++++.++..++.+++.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-----------~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-----------GHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-----------HHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 345788888888888888888888888887643 67788888877777777777777665532
Q ss_pred ccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc
Q 000184 1489 PSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE 1568 (1890)
Q Consensus 1489 ~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~ 1568 (1890)
...++.|+.+|.+++ +.+|..++.+|+++ .....++.|+.+|+++++.+|..|+.+|+.+..
T Consensus 80 ---~~~~~~L~~~l~~~~--~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALKDED--GWVRQSAAVALGQI------------GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ---GGGHHHHHHHTTCSS--HHHHHHHHHHHHHH------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCC--HHHHHHHHHHHHHh------------CcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence 234777777777766 77777777777777 455667777777777777777777777777653
Q ss_pred cccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000184 1569 EQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIA 1607 (1890)
Q Consensus 1569 ~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~ 1607 (1890)
...++.|..++++.++.+|..|+.+|++++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 246677777777777777777777777774
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.27 E-value=9.5e-11 Score=131.27 Aligned_cols=152 Identities=28% Similarity=0.327 Sum_probs=115.1
Q ss_pred ChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCcc
Q 000184 1411 AVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPS 1490 (1890)
Q Consensus 1411 av~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~ 1490 (1890)
..+.++++|+++++.+|..|+.+|+.++... .++.|+++|.++++.++..++.+++.+..
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~-----------~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDER-----------AVEPLIKALKDEDAWVRRAAADALGQIGD--------- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-----------GHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChh-----------HHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 4678888888899999999999988887643 67888888887777777777777765532
Q ss_pred ccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccc
Q 000184 1491 AAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1570 (1890)
Q Consensus 1491 ~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~ 1570 (1890)
...++.|+.+|.+++ +.+|..|+++|+++ .....++.|+.+|+++++.+|..|+++|+.+..
T Consensus 75 -~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 -ERAVEPLIKALKDED--GWVRQSAAVALGQI------------GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -GGGHHHHHHHTTCSS--HHHHHHHHHHHHHH------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -HHHHHHHHHHHcCCC--HHHHHHHHHHHHHh------------CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 234778888887766 77888888888777 455677778888888888888888888887753
Q ss_pred cccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000184 1571 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIA 1607 (1890)
Q Consensus 1571 ~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~ 1607 (1890)
.+.++.|+.++++.++.+|..|+.+|++++
T Consensus 137 -------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 356777788887777788888888877774
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.21 E-value=2.7e-10 Score=145.58 Aligned_cols=384 Identities=13% Similarity=0.034 Sum_probs=251.7
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHhhcCHHHHHhhhhcCcHHHHHHHHhcC--ChhHHHHHHHHHHHhhccchh-h-----
Q 000184 1205 LTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLG--GRGARYSAAKALESLFSADHI-R----- 1276 (1890)
Q Consensus 1205 Lv~~L~~~~~~~q~~a~~~ll~~l~~~~~~~~~~~~~g~i~~Lv~lL~~~--~~~~r~~Aa~aL~~L~~~~~~-r----- 1276 (1890)
++..+.+++.+.+..|...|-. +..+ ...+.+..|..++.++ +..+|..|+..|.++....+. +
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~-~~~~-------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~ 77 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLER-AAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 77 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHH-HHhh-------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3333444455566665555442 2210 0246778888999876 578999999999998643210 0
Q ss_pred ---hhhh--hcCCh-HHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcC-ChhhHHHHH
Q 000184 1277 ---NAES--ARQAV-QPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNC-SMELKGDAA 1349 (1890)
Q Consensus 1277 ---~~i~--~~~~i-~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~-~~~~~~~a~ 1349 (1890)
..+. ....| ..|+..|.+.+... ..++.++..++........ -.+.++.|+..+.+.+ +..+++.+.
T Consensus 78 ~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~-----w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 78 QRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ-----WPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC-----CTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc-----cHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 0111 12223 55888888888888 7788999999863211110 1468888999997643 668899999
Q ss_pred HHHHHhhCCh--hhHHHHHhhCchHHHHHHHccC--ChHHHHHHHHHHHhccC-Cc-hHHHHHHHcCChHHHHHhhcCCc
Q 000184 1350 ELCGVLFGNT--RIRSTVAAARCVEPLVSLLVTE--FSPAQHSVVRALDKLVD-DE-QLAELVAAHGAVIPLVGLLYGRN 1423 (1890)
Q Consensus 1350 ~~l~~L~~~~--~~~~~~~~~~~i~~Lv~lL~~~--~~~~~~~a~~aL~~L~~-~~-~~~~~~~~~gav~~L~~lL~~~~ 1423 (1890)
.+++.++..- +.. .......++.++..+.++ ++.+|..|+.++..+.. -+ .........-.++.|...+.+.+
T Consensus 152 ~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (462)
T 1ibr_B 152 EAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD 230 (462)
T ss_dssp HHHHHHHHHSCGGGT-GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhCCchhh-HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC
Confidence 9999887532 110 011124567788888887 78999999999998651 11 10000001113566777888999
Q ss_pred HhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccc-----------c-----c-
Q 000184 1424 YMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAG-----------I-----A- 1486 (1890)
Q Consensus 1424 ~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~-----------~-----~- 1486 (1890)
..+|..++.+|..++...+..-......++++.++..+.+.++.++..+.+.+..++.... . .
T Consensus 231 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (462)
T 1ibr_B 231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT 310 (462)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccch
Confidence 9999999999999986654321111222577778888888888898888888877765420 0 0
Q ss_pred -CCcc---ccCChHHHHHHhhcc-----CCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHH
Q 000184 1487 -KGPS---AAKVVEPLFLLLTRS-----EFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQL 1557 (1890)
Q Consensus 1487 -~~~~---~~~~v~~Li~lL~~~-----~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~ 1557 (1890)
.... -...++.+++.+.+. +....+|+.|..+|..+...... . .....++.+...|.+++..+|..
T Consensus 311 ~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~---~~~~~~~~l~~~l~~~~~~~r~a 385 (462)
T 1ibr_B 311 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D---IVPHVLPFIKEHIKNPDWRYRDA 385 (462)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--T---HHHHHHHHHHHHTTCSSHHHHHH
T ss_pred hHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--H---HHHHHHHHHHHHhcCCChHHHHH
Confidence 0000 123456666666543 12356788899999988654331 1 12345677778889999999999
Q ss_pred HHHHHHHhhcccc---cccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccC
Q 000184 1558 AAELLSHLLLEEQ---LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTW 1610 (1890)
Q Consensus 1558 A~~aL~~l~~~~~---~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~ 1610 (1890)
|+.+|+.++.... +...+ ...++.|+..+++.++.+|..|+.+|++++..-
T Consensus 386 al~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 386 AVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999997322 11212 467899999999999999999999999998643
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.14 E-value=2.6e-07 Score=121.10 Aligned_cols=528 Identities=13% Similarity=0.081 Sum_probs=314.6
Q ss_pred HHHHHHHHHHc-cCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccchhh
Q 000184 21 SVAQCIEQLRQ-SSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELR 99 (1890)
Q Consensus 21 ~v~~~~~~l~~-~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~ 99 (1890)
++..+-+.+++ ...+..+|..++.++..+--.+.+ -+.+.+..++++.+.+...|.-+--++..+++++..-
T Consensus 36 E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d-------~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~ 108 (621)
T 2vgl_A 36 ELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHD-------IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSEL 108 (621)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCC-------CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCC-------CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHH
Confidence 34444444442 223455667777777766554321 1467888999999999999988888888887554321
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHHHHHH
Q 000184 100 VKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALR 179 (1890)
Q Consensus 100 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~~~L~ 179 (1890)
.. -.+..+.+-|.++++-.+-.|.++|.++.. ++ + -+.++|.+.+.+.+ .+.++.++..|+.++.
T Consensus 109 ~~----L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e------~-~~~l~~~v~~~l~~-~d~~~~VRK~A~~al~ 173 (621)
T 2vgl_A 109 IR----LINNAIKNDLASRNPTFMGLALHCIANVGS---RE------M-AEAFAGEIPKILVA-GDTMDSVKQSAALCLL 173 (621)
T ss_dssp HH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HH------H-HHHHTTHHHHHHHC-SSSCHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HH------H-HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHH
Confidence 11 136677778889999999888888888765 11 1 23456667777632 2357889999999998
Q ss_pred HhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHH----HHHcCC-C---
Q 000184 180 NLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLL----KLLGSG-N--- 251 (1890)
Q Consensus 180 ~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv----~lL~~~-~--- 251 (1890)
++....++. +...+.++.+.++|.++++.++.+|+.+|..++..++... ...++.++ +++..+ .
T Consensus 174 kl~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~ 245 (621)
T 2vgl_A 174 RLYRTSPDL---VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQ 245 (621)
T ss_dssp HHHHHCGGG---CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCS
T ss_pred HHHHhChhh---cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCcc
Confidence 888644332 2224889999999999999999999999988876554321 12344444 443321 1
Q ss_pred --------CHhHHHHHHHHHHHhhhc-CHHHHHHHHhcCChHHHHHhhcCCCcc-ccchh-hhHHHHHHHHHHHHHhhCC
Q 000184 252 --------EASVRAEAAGALKSLSDH-CKDARREIAGSNGIPAMINATIAPSKE-FMQGE-YAQALQENAMCALANISGG 320 (1890)
Q Consensus 252 --------~~~~~~~Aa~aL~~Ls~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~~-~~~~l~e~a~~aL~nl~~~ 320 (1890)
++-.+......|..++.. +++.+..+.+ .++.++..+....+. ..++. ....+...|+.
T Consensus 246 ~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~-------- 315 (621)
T 2vgl_A 246 DYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAIS-------- 315 (621)
T ss_dssp TTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHH--------
T ss_pred chhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHH--------
Confidence 355677777777777653 2344433332 122222221111000 00000 01122222222
Q ss_pred CchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHHHHhhCC
Q 000184 321 LSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGN 400 (1890)
Q Consensus 321 ~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~ 400 (1890)
++..+..+
T Consensus 316 ------------------------------------------------------------------------~i~~l~~~ 323 (621)
T 2vgl_A 316 ------------------------------------------------------------------------LIIHHDSE 323 (621)
T ss_dssp ------------------------------------------------------------------------HHHHHCCC
T ss_pred ------------------------------------------------------------------------HHHhcCCc
Confidence 22222211
Q ss_pred CccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC-CCCHHHHHHHHHHHHH
Q 000184 401 PLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCL 479 (1890)
Q Consensus 401 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~n 479 (1890)
++.. ..++..|..++.++++.+|..++..|..++..++. ...+. .....++..|+ +++..++..+...|..
T Consensus 324 ~~~~-----~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 324 PNLL-----VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTERDVSVRQRAVDLLYA 395 (621)
T ss_dssp HHHH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHH
Confidence 1110 13455677778888899999999999999876542 12232 45677888888 8999999999999999
Q ss_pred cccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHH
Q 000184 480 LSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKEIAA 558 (1890)
Q Consensus 480 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~-~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa 558 (1890)
++ ++.|...+ +..|...+.+.+.+.+..++.+++.++.. .+...+ .+..|+++++.....+...+.
T Consensus 396 l~--~~~Nv~~I-----v~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~------~v~~Ll~ll~~~~~~v~~ev~ 462 (621)
T 2vgl_A 396 MC--DRSNAQQI-----VAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTW------YVDTILNLIRIAGDYVSEEVW 462 (621)
T ss_dssp HC--CHHHHHHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHH------HHHHHHHHHHHHGGGSCSHHH
T ss_pred Hc--ChhhHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHHHhhcccchHHHH
Confidence 98 35554443 45677777778889999999999888752 112222 356777777654333333333
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCC--CHHHHHHH
Q 000184 559 KTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST--KEETQAKS 636 (1890)
Q Consensus 559 ~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~--~~~~~~~A 636 (1890)
..+.++... .++.+.+ ++..|.+.+.++ ...+-..+
T Consensus 463 ~~l~~ii~~----------------~~~~~~~--------------------------~~~~l~~~l~~~~~~~~li~~~ 500 (621)
T 2vgl_A 463 YRVIQIVIN----------------RDDVQGY--------------------------AAKTVFEALQAPACHENLVKVG 500 (621)
T ss_dssp HHHHHHHGG----------------GCSCHHH--------------------------HHHHHHHHHTSSSCCHHHHHHH
T ss_pred HHHHHHHhC----------------ChhHHHH--------------------------HHHHHHHHHcCccchHHHHHHH
Confidence 333333221 1222222 245566666553 45666788
Q ss_pred HHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHH-HHhC--CC
Q 000184 637 ASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLV-VLAG--SP 713 (1890)
Q Consensus 637 ~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv-~ll~--~~ 713 (1890)
+|.++..+..-++... +.-...+..+..-+...++.++...+.++..++...++.... +..++ .... +.
T Consensus 501 ~wilGEy~~~~~~~~~-~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~-------i~~~l~~~~~~~~~ 572 (621)
T 2vgl_A 501 GYILGEFGNLIAGDPR-SSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKAT-------IQDVLRSDSQLKNA 572 (621)
T ss_dssp HHHHHHHTHHHHSSTT-SCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHH-------HHHHHSSHHHHSCS
T ss_pred HHHhcchHHHhcccCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHH-------HHHHHHHHhcCCCC
Confidence 8999988753111000 000012334555556778899999999999997765432211 22222 2233 88
Q ss_pred CHHHHHHHHHHHHHHhcC
Q 000184 714 VLEVAEQATCALANLILD 731 (1890)
Q Consensus 714 ~~ev~~~aa~aL~nL~~~ 731 (1890)
+.|+|.+|..-..-+..+
T Consensus 573 d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 573 DVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp SHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHccC
Confidence 999999988775544333
No 63
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.01 E-value=3.6e-08 Score=125.81 Aligned_cols=382 Identities=14% Similarity=0.085 Sum_probs=259.7
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC--CHHHHHHHHHHHHHHhcCChHHHH---
Q 000184 457 LLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRA--- 531 (1890)
Q Consensus 457 ~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~e~a~~aL~~L~~~~~~~r~--- 531 (1890)
.++.-+.+++.++|..|-..|.++...+. .+.+..|..++.++ ++.+|..|+..|.|+.......+.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 34455667889999999999988763101 23566777777765 688999999999999743211000
Q ss_pred ----HH----HhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC-----CCCcHHHHHHHHhcC--CcchHHHHHHHHH
Q 000184 532 ----CV----ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS-----DTATISQLTALLTSD--LPESKVYVLDALK 596 (1890)
Q Consensus 532 ----~i----~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~-----~~~~i~~L~~lL~~~--~~~~~~~a~~aL~ 596 (1890)
.. .....-..|+..+.+.++.+ ..++.++..++.+. -+..++.++..+.++ ++.++..+..+++
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG 155 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 00 01123356788888888888 88999999988652 246778888888888 7888999999999
Q ss_pred HHhhhcCchHHHHHhhhhcchHHHHHHHhcCC--CHHHHHHHHHHHHHHhhcChhHH-HHHHHcCchHHHHHhhcCCCHH
Q 000184 597 SMLSVVSFSDILREGSAANDAVETMIKILSST--KEETQAKSASALAGIFETRKDLR-ESSIAVKTLWSVMKLLDVGSEC 673 (1890)
Q Consensus 597 ~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~--~~~~~~~A~~aL~~L~~~~~~~~-~~~~~~g~i~~Lv~lL~~~~~~ 673 (1890)
.++....... .... ....++.+..++.+. ++.+|..|+.++.++...-++.. ......-.++.+..++.++++.
T Consensus 156 ~l~~~~~~~~-~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 156 YICQDIDPEQ-LQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp HHHHHSCGGG-TGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHhCCchh-hHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 8876331110 0101 123578889999887 79999999999998764322111 0011122467777778888999
Q ss_pred HHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHH-----------------
Q 000184 674 ILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE----------------- 736 (1890)
Q Consensus 674 v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~----------------- 736 (1890)
++..++.++..++...++..+. ....+.++.++..+++.+++++..+...+.++........
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMET-YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTT-TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchh
Confidence 9999999999998654332111 1111667788888899999999999998888863221000
Q ss_pred -HH---HhcCcHHHHHHHHhcC-------CcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccch
Q 000184 737 -KA---IAEEIILPATRVLCEG-------TISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVAT 805 (1890)
Q Consensus 737 -~~---~~~~~v~~L~~ll~~~-------~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~ 805 (1890)
.+ .-..+++.+++.+... +..+|..|+.+|..+....+ .. +. ...++.+...+.+++..+.
T Consensus 312 ~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~-~~-----~~~~~~l~~~l~~~~~~~r- 383 (462)
T 1ibr_B 312 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DD-IV-----PHVLPFIKEHIKNPDWRYR- 383 (462)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TT-HH-----HHHHHHHHHHTTCSSHHHH-
T ss_pred HHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HH-HH-----HHHHHHHHHHhcCCChHHH-
Confidence 01 1145667777777543 23488999999999987654 22 21 2566667777877766676
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhc
Q 000184 806 SEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCR 866 (1890)
Q Consensus 806 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 866 (1890)
..|+.+|..++..... ....-..+..++.+++++.+.++.+|..|..+|.+++.
T Consensus 384 ~aal~~l~~l~~~~~~-------~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 384 DAAVMAFGCILEGPEP-------SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHTSSSSCT-------TTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcH-------HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8889999888642210 11222447788999999999999999999999999943
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.96 E-value=3.8e-07 Score=119.59 Aligned_cols=474 Identities=13% Similarity=0.074 Sum_probs=307.1
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHH
Q 000184 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1890)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 490 (1890)
.+....+.++.+++...++.+.-++..+...+++... -.+..+.+=+.++++.++..|..+|+++. .++..+
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~-----L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~- 145 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR-----LINNAIKNDLASRNPTFMGLALHCIANVG--SREMAE- 145 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH-----HHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-
Confidence 4567778899999999999999999888876543211 24567777788999999999999999997 344222
Q ss_pred HHhcCCcHHHHHhc--cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCC
Q 000184 491 ITAAGGIPPLVQIL--ESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 568 (1890)
Q Consensus 491 i~~~g~i~~Lv~lL--~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~ 568 (1890)
..++.+.+++ .+.++-+|..|+.++.++...+++.- ...+.++.+.+++.+.++.++..|..++..++.+.
T Consensus 146 ----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~ 218 (621)
T 2vgl_A 146 ----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN 218 (621)
T ss_dssp ----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence 3678889999 88899999999999999998655432 12478999999999999999999999999998755
Q ss_pred CC---CcHHHHHHHH----hcC-C--cc-------hHHHHHHHHHHHhhhcCc--hHHHHHhhhhcchHHHHHHHhc---
Q 000184 569 DT---ATISQLTALL----TSD-L--PE-------SKVYVLDALKSMLSVVSF--SDILREGSAANDAVETMIKILS--- 626 (1890)
Q Consensus 569 ~~---~~i~~L~~lL----~~~-~--~~-------~~~~a~~aL~~L~~~~~~--~~~~~~~~~~~~~i~~Lv~lL~--- 626 (1890)
.. ..++.++..| ... . ++ .-..-...+..+...... ++. ...+ .+.++.++..+.
T Consensus 219 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~-~~~l--~~~L~~il~~~~~~~ 295 (621)
T 2vgl_A 219 PEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV-RGRL--TECLETILNKAQEPP 295 (621)
T ss_dssp HHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHH-HHHH--HHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHH-HHHH--HHHHHHHHHhhccCc
Confidence 32 2344444433 222 1 11 112223334434444332 221 2111 112333332221
Q ss_pred ------CC--CHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHH
Q 000184 627 ------ST--KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAV 698 (1890)
Q Consensus 627 ------s~--~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 698 (1890)
+. ...+...|+.++..+.. .++.. ..++..|..++.+++++++..++.++..++...+. .. ++
T Consensus 296 ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~-----~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~-~~ 366 (621)
T 2vgl_A 296 KSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLL-----VRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HE-AV 366 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HH-HH
T ss_pred ccccccccchHHHHHHHHHHHHHhcCC-cHHHH-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HH-HH
Confidence 11 23778888888888864 23322 24678899999989999999999999999866432 11 12
Q ss_pred hCCChHHHHHHhC-CCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhcCccch
Q 000184 699 ARDALSPLVVLAG-SPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDY 777 (1890)
Q Consensus 699 ~~~~v~~Lv~ll~-~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~ 777 (1890)
......++..++ +++..++..+...|..++.. +.. ..++.-|.+++...+.+.+..++.++..+....+...
T Consensus 367 -~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv-----~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~ 439 (621)
T 2vgl_A 367 -KTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNA-----QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY 439 (621)
T ss_dssp -HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHH-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST
T ss_pred -HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 346778888888 99999999999999988743 222 3567778888888888899999999998875433221
Q ss_pred hHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCC--hhHHH
Q 000184 778 TITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADAT--PLLQD 855 (1890)
Q Consensus 778 ~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~--~~~~~ 855 (1890)
...+..+++++......+. .+++..+..+....+.. . ...+..+...+.+.. ..+..
T Consensus 440 --------~~~v~~Ll~ll~~~~~~v~-~ev~~~l~~ii~~~~~~--~----------~~~~~~l~~~l~~~~~~~~li~ 498 (621)
T 2vgl_A 440 --------TWYVDTILNLIRIAGDYVS-EEVWYRVIQIVINRDDV--Q----------GYAAKTVFEALQAPACHENLVK 498 (621)
T ss_dssp --------HHHHHHHHHHHHHHGGGSC-SHHHHHHHHHHGGGCSC--H----------HHHHHHHHHHHTSSSCCHHHHH
T ss_pred --------HHHHHHHHHHHHhhcccch-HHHHHHHHHHHhCChhH--H----------HHHHHHHHHHHcCccchHHHHH
Confidence 2566677788877666666 77777888776554331 0 123444555565543 34555
Q ss_pred HHHHHHHHHhcCCccchhhhhccCccc-hHHHHHHHh---hcCCCceeecchhHHHHHhhhchhhHHHhhhccccchhhH
Q 000184 856 KAIEILSRLCRDQPAVLGDEVTGASGC-ISSIARRVI---SCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLI 931 (1890)
Q Consensus 856 ~a~~~L~~l~~~~~~~~g~~i~~~~~~-~~~~~~~~l---~s~~~~~r~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i 931 (1890)
.+.++++.| |+.+....++ +...++.+. ...++.+|....-+++++..- . +...
T Consensus 499 ~~~wilGEy--------~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~--~------------p~~~ 556 (621)
T 2vgl_A 499 VGGYILGEF--------GNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNL--F------------PEVK 556 (621)
T ss_dssp HHHHHHHHH--------THHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH--C------------GGGH
T ss_pred HHHHHhcch--------HHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH--C------------hHHH
Confidence 666888888 4556554433 222233332 346678886665555554321 0 1112
Q ss_pred HHHHHHHHhhcC--CCCcCCCCChhHHHHHhhhhh
Q 000184 932 QSLVTMLSVVEA--SPLRNQGNDDKEAISIYRYTS 964 (1890)
Q Consensus 932 ~~Lv~~l~~~~~--~~~~~~~~~~~~~~~~~~~l~ 964 (1890)
+.+..+|..... + .+.+.+-.|....+.|.
T Consensus 557 ~~i~~~l~~~~~~~~---~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 557 ATIQDVLRSDSQLKN---ADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHHHHSSHHHHSC---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHc
Confidence 334444543332 2 35556667777777654
No 65
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.87 E-value=8.1e-05 Score=97.90 Aligned_cols=325 Identities=14% Similarity=0.087 Sum_probs=218.9
Q ss_pred HHHHHHHHHHhh-CCCccchhhhhcCcHHHHHHHhc---CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhh
Q 000184 387 QERTIEALASLY-GNPLLSIKLENSEAKRLLVGLIT---MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 462 (1890)
Q Consensus 387 ~~~a~~aL~~L~-~~~~~~~~l~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL 462 (1890)
+-.|+.+|+-+. .+.+ +++..|-..|. ++++.++.-|+.+|.-+..+... .++..|.+.|
T Consensus 375 k~sA~aSLGlIh~g~~~--------~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L 438 (963)
T 4ady_A 375 KFTATASLGVIHKGNLL--------EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNII 438 (963)
T ss_dssp HHHHHHHHHHHTSSCTT--------THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHH
T ss_pred HHHHHHHhhhhccCchH--------HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHH
Confidence 556666666552 2322 34555555665 56788999999999988876532 2567777877
Q ss_pred CCCC--------HHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 000184 463 GLSS--------EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVE 534 (1890)
Q Consensus 463 ~~~~--------~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~ 534 (1890)
.+++ +.++..|+..|+....+... ..+++.|..++.+.+...++.|+.+|+.+...+...
T Consensus 439 ~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~----- 506 (963)
T 4ady_A 439 VENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP----- 506 (963)
T ss_dssp HHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-----
T ss_pred cCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-----
Confidence 7655 67888888888886533211 126778888998888888889999999874322111
Q ss_pred hCCCHHHHHHHhh-cCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhc-CCcchHHHHHHHHHHHhhhcCchHHHHHhh
Q 000184 535 SADAVPALLWLLK-NGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS-DLPESKVYVLDALKSMLSVVSFSDILREGS 612 (1890)
Q Consensus 535 ~~g~i~~Lv~ll~-~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 612 (1890)
.++..|+..+. +.+..+++.++.+|+.+.. ..+..++.+++.|.. .++-++..+.-+++ +++..+.+
T Consensus 507 --~ai~~LL~~~~e~~~e~vrR~aalgLGll~~-g~~e~~~~li~~L~~~~dp~vRygaa~alg-lAyaGTGn------- 575 (963)
T 4ady_A 507 --EAIHDMFTYSQETQHGNITRGLAVGLALINY-GRQELADDLITKMLASDESLLRYGGAFTIA-LAYAGTGN------- 575 (963)
T ss_dssp --HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT-TCGGGGHHHHHHHHHCSCHHHHHHHHHHHH-HHTTTSCC-------
T ss_pred --HHHHHHHHHHhccCcHHHHHHHHHHHHhhhC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcCCCC-------
Confidence 14566666544 4577899999999998855 345678888888764 56667777777776 33333222
Q ss_pred hhcchHHHHHHHh-cCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhh-cCCCHHHHHHHHHHHHHHHccCc
Q 000184 613 AANDAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIFLSVR 690 (1890)
Q Consensus 613 ~~~~~i~~Lv~lL-~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~ 690 (1890)
..+|..|+..+ .+.++.+|+.|+.+|+.+..+.+ ..++.++..+ ++.++.++..++.+++.++.+++
T Consensus 576 --~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~ 644 (963)
T 4ady_A 576 --NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG 644 (963)
T ss_dssp --HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC
T ss_pred --HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC
Confidence 23467666654 56788999999999999887654 4577787755 67899999999999999988764
Q ss_pred hhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhc-C-CcchHHHHHHHHHH
Q 000184 691 ENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCE-G-TISGKTLAAAAIAR 768 (1890)
Q Consensus 691 ~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~-~-~~~~~~~aa~aL~~ 768 (1890)
. ..++..|..++++++..|+..|+.+|+.+...........-......|..+... + +...+-.+.-|..-
T Consensus 645 ~--------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGl 716 (963)
T 4ady_A 645 L--------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGI 716 (963)
T ss_dssp C--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred c--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 1 235778999999999999999999999998543221000001233334455543 2 23356555555443
Q ss_pred H
Q 000184 769 L 769 (1890)
Q Consensus 769 L 769 (1890)
+
T Consensus 717 l 717 (963)
T 4ady_A 717 M 717 (963)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.74 E-value=1.3e-06 Score=116.05 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=144.5
Q ss_pred CcHHHHHHHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHH-HhccCChHHHHHHHHHHHHHhccC--chhh
Q 000184 1242 AAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVE-ILNTGLEREQHAAIAALVRLLSEN--PSRA 1318 (1890)
Q Consensus 1242 g~i~~Lv~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~-lL~~~~~~~~~~A~~aL~~L~~~~--~~~~ 1318 (1890)
+.+.|++..|++++...|..|++||.+|......|..+...++|.+++. +|.+.+.++|.+|+++|.||+.+. +.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4567788889999999999999999999999999999999999988655 788999999999999999999743 5556
Q ss_pred HHHHhhhCChHHHHHHHHhhcCC--------------------hhhHHHHHHHHHHhhC-ChhhHHHHHhhCchHHHHHH
Q 000184 1319 LAVADVEMNAVDVLCRILSSNCS--------------------MELKGDAAELCGVLFG-NTRIRSTVAAARCVEPLVSL 1377 (1890)
Q Consensus 1319 ~~~~~v~~g~v~~L~~lL~~~~~--------------------~~~~~~a~~~l~~L~~-~~~~~~~~~~~~~i~~Lv~l 1377 (1890)
.+ ++.|++++|..++..... ..+.+.+..++..|+. +.+....+...+.++.|+..
T Consensus 114 ~l---~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 114 HL---YRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HH---HHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HH---HHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 66 578999999998853200 0122344556666654 44555677788899999999
Q ss_pred HccC---ChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHh--hcCCcHhHHHHHHHHHHHhc
Q 000184 1378 LVTE---FSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGL--LYGRNYMLHEAISRALVKLG 1438 (1890)
Q Consensus 1378 L~~~---~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~l--L~~~~~~vr~~A~~aL~~l~ 1438 (1890)
|.+. ..+++..|+.+|+.++ +++.....+...|....+..+ +...+...|..+++.|.++.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 8542 4679999999999999 556666666565543322222 22344455788888888764
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.74 E-value=1.9e-06 Score=113.16 Aligned_cols=297 Identities=14% Similarity=0.114 Sum_probs=205.9
Q ss_pred HHHhcCChhHHHHHHHHHHHhhccchhhhhhhhcCChHHHHHHhc---cCChHHHHHHHHHHHHHhccCchhhHHHHhhh
Q 000184 1249 AVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILN---TGLEREQHAAIAALVRLLSENPSRALAVADVE 1325 (1890)
Q Consensus 1249 ~lL~~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~~~~i~~Lv~lL~---~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~ 1325 (1890)
.-+.....+.|+.|+.+||-+-.-.. .+++..|-..|. +.++..+.-|+.+|+-+..+...
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~g~~-------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------- 428 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHKGNL-------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------- 428 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTSSCT-------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------
T ss_pred hhhhccchHHHHHHHHHhhhhccCch-------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------
Confidence 34555667899999999997643110 235677777776 45667788899999999875422
Q ss_pred CChHHHHHHHHhhcC-------ChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-
Q 000184 1326 MNAVDVLCRILSSNC-------SMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV- 1397 (1890)
Q Consensus 1326 ~g~v~~L~~lL~~~~-------~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~- 1397 (1890)
.++..|...|.+.+ .+.++..|.--|+..+--. .....++.|..++.+.+...++.|+.+|+.+.
T Consensus 429 -~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS------~~eev~e~L~~~L~dd~~~~~~~AalALGli~v 501 (963)
T 4ady_A 429 -DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS------ANIEVYEALKEVLYNDSATSGEAAALGMGLCML 501 (963)
T ss_dssp -HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence 25677888887643 2345656666777653111 02245677888888888888889999999774
Q ss_pred --CCchHHHHHHHcCChHHHHHhh-cCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccC-ChhHHHHHH
Q 000184 1398 --DDEQLAELVAAHGAVIPLVGLL-YGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEA-PDFLCSAFA 1473 (1890)
Q Consensus 1398 --~~~~~~~~~~~~gav~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~-~~~v~~~aa 1473 (1890)
++++. ++.|+..+ .+.+..+||.++.+|+.+...+++ .++.+++.|... ++.++..++
T Consensus 502 GTgn~~a---------i~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa 563 (963)
T 4ady_A 502 GTGKPEA---------IHDMFTYSQETQHGNITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGA 563 (963)
T ss_dssp TCCCHHH---------HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHH
T ss_pred ccCCHHH---------HHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHH
Confidence 34332 34444433 467889999999999988777644 678888888754 455666555
Q ss_pred HHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhcc-CCCCH
Q 000184 1474 ELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLL-DSPAP 1552 (1890)
Q Consensus 1474 ~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL-~s~~~ 1552 (1890)
.+++ ++.-.. .....++.|+..+.+ +...++|..|+.+|+.+.- .....++.++.+| ++.++
T Consensus 564 ~alg-lAyaGT-----Gn~~aIq~LL~~~~~-d~~d~VRraAViaLGlI~~----------g~~e~v~rlv~~L~~~~d~ 626 (963)
T 4ady_A 564 FTIA-LAYAGT-----GNNSAVKRLLHVAVS-DSNDDVRRAAVIALGFVLL----------RDYTTVPRIVQLLSKSHNA 626 (963)
T ss_dssp HHHH-HHTTTS-----CCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTS----------SSCSSHHHHTTTGGGCSCH
T ss_pred HHHH-HHhcCC-----CCHHHHHHHHHHhcc-CCcHHHHHHHHHHHHhhcc----------CCHHHHHHHHHHHHhcCCH
Confidence 5543 222211 123457777777653 3348899999999998742 3345678888754 58999
Q ss_pred HHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcc
Q 000184 1553 AVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALT 1609 (1890)
Q Consensus 1553 ~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~ 1609 (1890)
.+|..++.+|+.+..... ...+++.|.+++.+.+.+|+..|+.+|+.++..
T Consensus 627 ~VR~gAalALGli~aGn~------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 627 HVRCGTAFALGIACAGKG------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhccCCC------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999865210 124688999999999999999999999999853
No 68
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.56 E-value=1.9e-07 Score=124.11 Aligned_cols=214 Identities=13% Similarity=0.105 Sum_probs=146.4
Q ss_pred CcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHH-HhccCCCHHHHHHHHHHHHHHhcC-ChHHH
Q 000184 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV-QILESGSAKAKEDSASILRNLCNH-SEDIR 530 (1890)
Q Consensus 453 g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~~e~a~~aL~~L~~~-~~~~r 530 (1890)
+.+.++++.|++++++.|..|+++|+||+. ++..++.+...|+|.+++ .+|.+++.++|+.|+++|.||+.+ .++.+
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 456678888999999999999999999995 788899999999998765 578889999999999999999974 46888
Q ss_pred HHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHH
Q 000184 531 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD--TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDIL 608 (1890)
Q Consensus 531 ~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~--~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 608 (1890)
..+.+.|++++|..+++.... .+..+....+ ...-..++ .++..+++.+|.+|+... .+ .
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~lL~~L~e~s--~~-~ 174 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLE--------TLTTSEPPFSKLLKAQQRLV-------WDITGSLLVLIGLLALAR--DE-I 174 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHH--------HHHCBTTBGGGSCHHHHHHH-------HHHHHHHHHHHHHHHHHC--HH-H
T ss_pred HHHHHcChHHHHHHHHHhhHH--------HHhhhccccccccHHHHHHH-------HHHHHHHHHHHHHHHhCC--HH-H
Confidence 899999999999999875211 1111100000 00000000 011122333333333211 11 2
Q ss_pred HHhhhhcchHHHHHHHhcC---CCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHH---HHhhcCCCHHHHHHHHHHH
Q 000184 609 REGSAANDAVETMIKILSS---TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSV---MKLLDVGSECILVEASRCL 682 (1890)
Q Consensus 609 ~~~~~~~~~i~~Lv~lL~s---~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~L---v~lL~~~~~~v~~~a~~aL 682 (1890)
...+...++++.|+.+|.+ ...+++..|+.+|..++.++++..+.+...+....+ ..+..+.+ ..+..+++.+
T Consensus 175 ~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL 253 (684)
T 4gmo_A 175 HEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVL 253 (684)
T ss_dssp HHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHH
T ss_pred HHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHH
Confidence 3345567899999998843 357899999999999999999888877776653332 22223333 3466788888
Q ss_pred HHHH
Q 000184 683 AAIF 686 (1890)
Q Consensus 683 ~~L~ 686 (1890)
.|+.
T Consensus 254 ~Ni~ 257 (684)
T 4gmo_A 254 HNVF 257 (684)
T ss_dssp HHHH
T ss_pred HhHh
Confidence 8875
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.31 E-value=9.3e-06 Score=86.97 Aligned_cols=226 Identities=17% Similarity=0.134 Sum_probs=173.5
Q ss_pred hcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhh
Q 000184 614 ANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 693 (1890)
Q Consensus 614 ~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 693 (1890)
..+.+..|.++|++.++.++.++..+|..+-...+..-....-...+|.+++++.+.++.+...|++++..+..+.|- .
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL-~ 109 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM-G 109 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB-C
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC-C
Confidence 355789999999999999999999999999988655555566778999999999999999999999999999887753 2
Q ss_pred HHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh-cCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 000184 694 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI-LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHS 772 (1890)
Q Consensus 694 ~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~-~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~ 772 (1890)
...+ ......|..+++++++-.+++++..|.-+- ..+ ...++..+.+++.+.+..++..+..+|-++...
T Consensus 110 ~~~y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 110 SKTF--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHH--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 2223 235788999999999999999999999883 111 236788899999888888999999999999875
Q ss_pred CccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhh--cCC
Q 000184 773 RKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIA--DAT 850 (1890)
Q Consensus 773 ~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~--~~~ 850 (1890)
..+.. +-...+..+=+++++.|+.+. +.|+++|..++..+=- .+ . ...-..+...+..+. .|.
T Consensus 181 S~D~~------i~~~I~~eI~elL~~eD~~l~-e~aLd~Le~ils~pi~----~~---~-~~~~~~~~~~v~~l~~~~~~ 245 (265)
T 3b2a_A 181 SADSG------HLTLILDEIPSLLQNDNEFIV-ELALDVLEKALSFPLL----EN---V-KIELLKISRIVDGLVYREGA 245 (265)
T ss_dssp CSSCC------CGGGTTTTHHHHHTCSCHHHH-HHHHHHHHHHTTSCCC----SC---C-HHHHHHHHHHHHHGGGCSSC
T ss_pred cCCHH------HHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHcCccc----Hh---H-HHHHHHHHHHHHHHHHhcCC
Confidence 54433 223666677788898888888 9999999999644311 00 0 011123344555665 688
Q ss_pred hhHHHHHHHHHHHH
Q 000184 851 PLLQDKAIEILSRL 864 (1890)
Q Consensus 851 ~~~~~~a~~~L~~l 864 (1890)
|.++++|..+-+.+
T Consensus 246 ~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 246 PIIRLKAKKVSDLI 259 (265)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998887766
No 70
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.26 E-value=1.4e-07 Score=96.97 Aligned_cols=121 Identities=19% Similarity=0.248 Sum_probs=96.0
Q ss_pred cCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCC
Q 000184 1409 HGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKG 1488 (1890)
Q Consensus 1409 ~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~ 1488 (1890)
...++.|..+|+++++.+|..|+.+|++++.. .++.|+++|.++++.++..++.+++.+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 45678899999999999999999999988754 35899999999888899888888765532
Q ss_pred ccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHh
Q 000184 1489 PSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHL 1565 (1890)
Q Consensus 1489 ~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l 1565 (1890)
...+++|+.++.+++ +.||..|+++|+++ .....++.|+.+|+++++.+|..|+.+|+++
T Consensus 72 ---~~a~~~L~~~L~d~~--~~VR~~A~~aL~~~------------~~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDS--GFVRSGAARSLEQI------------GGERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHHHHCC--THHHHHHHHHHHHH------------CSHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHHcCCC--HHHHHHHHHHHHHh------------CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 235999999999887 99999999999998 5667899999999999999999999998753
No 71
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.18 E-value=2.8e-07 Score=94.77 Aligned_cols=122 Identities=19% Similarity=0.234 Sum_probs=95.3
Q ss_pred hhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHH
Q 000184 1367 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL 1446 (1890)
Q Consensus 1367 ~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 1446 (1890)
....++.++.+|.++++.+|..|+++|+.+.. ..++.|+.+|+++++.+|..|+++|++++...
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~----- 73 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDER----- 73 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSHH-----
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCHH-----
Confidence 45678889999999999999999999998852 23689999999999999999999999998543
Q ss_pred HHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHh
Q 000184 1447 EMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNI 1522 (1890)
Q Consensus 1447 ~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl 1522 (1890)
+++.|++.|.+++..|+..++++++.+.. ...++.|+.++++++ +.+|..|..+|.++
T Consensus 74 ------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~--~~vr~~A~~aL~~i 131 (131)
T 1te4_A 74 ------AVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGT--GFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCC--THHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCC--HHHHHHHHHHHHhC
Confidence 68999999999999999999999987753 235899999998877 99999999988653
No 72
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.11 E-value=0.00063 Score=82.36 Aligned_cols=347 Identities=12% Similarity=0.057 Sum_probs=199.3
Q ss_pred CCchHHHHHHhhc-CCHHHHHHHHHHHHHhhccch---hhHHHHhcCChH---HHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000184 64 SQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKENE---LRVKVLLGGCIP---PLLGLLKSSSAEGQIAAAKTIYAVSQG 136 (1890)
Q Consensus 64 ~g~v~~Lv~lL~~-~~~~~~~~aa~~L~~L~~~~~---~~~~i~~~g~i~---~Lv~lL~~~~~~~~~~a~~aL~~ls~~ 136 (1890)
..++..++.+|+. .++++..+....+..+..++. .+..++....-+ ++-..+..++.-....+...+.-++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 4677889999985 567888999999999887654 555554332221 222233333344445555554444432
Q ss_pred CCCCccccchhhhcCChHHHH------HHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCC--HHHHHHhhcC-
Q 000184 137 GAKDYVGSKIFSTEGVVPVLW------EQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGG--IDILVKLLTL- 207 (1890)
Q Consensus 137 ~~~~~~~~~~~~~~g~ip~L~------~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~--v~~Lv~lL~~- 207 (1890)
..+ ...++|.+. ..++.. +....+..+..+|..|.. .+.+|..+.+.++ +++++.+++.
T Consensus 156 ~~~---------~~~~l~~l~~~~~~~~~L~~~--~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~ 223 (480)
T 1ho8_A 156 GLH---------NVKLVEKLLKNNNLINILQNI--EQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRA 223 (480)
T ss_dssp TTC---------CHHHHHHHHHCHHHHHHHHCT--TCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCc---------cHhHHHHHhhhHHHHHHhccc--cCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHh
Confidence 111 122333333 344332 122345567788888885 4578777765543 6666654431
Q ss_pred --------------C--CHHHHHHHHHHHHHHhhcCchhhhHhhccchH--HHHHHHHcCCCCHhHHHHHHHHHHHhhhc
Q 000184 208 --------------G--QSSTQAHVCFLLACMMEEDVSVCSRVLAADAT--KQLLKLLGSGNEASVRAEAAGALKSLSDH 269 (1890)
Q Consensus 208 --------------~--~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~ 269 (1890)
+ ...++.+++.+++.|+...+ ....+...+.. +.|+.+++....+++.+.+..+|+|+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~ 302 (480)
T 1ho8_A 224 TDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 302 (480)
T ss_dssp HC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSS
T ss_pred hccccccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcc
Confidence 1 24567899999987776544 56666666543 67888888877789999999999999985
Q ss_pred CHH-----HHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhh
Q 000184 270 CKD-----ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADT 344 (1890)
Q Consensus 270 ~~~-----~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~ 344 (1890)
.+. ....+...++ +.++..|....- .|+++.+.--.....
T Consensus 303 ~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~------~Dedl~edl~~L~e~---------------------------- 347 (480)
T 1ho8_A 303 RVKQHKKVIKQLLLLGNA-LPTVQSLSERKY------SDEELRQDISNLKEI---------------------------- 347 (480)
T ss_dssp SSTTHHHHHHHHHHHHCH-HHHHHHHHSSCC------SSHHHHHHHHHHHHH----------------------------
T ss_pred cchhhhhHHHHHHHHccc-hHHHHHHhhCCC------CcHHHHHHHHHHHHH----------------------------
Confidence 521 1223333444 445555544321 123333222111111
Q ss_pred HhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCCh--HHHHHHHHHHHHhhCCCccchhhhh--cCcHHHHHHHh
Q 000184 345 LGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPF--LVQERTIEALASLYGNPLLSIKLEN--SEAKRLLVGLI 420 (1890)
Q Consensus 345 ~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~--~~~~~a~~aL~~L~~~~~~~~~l~~--~g~i~~Lv~lL 420 (1890)
+.+....-. .+.....++..+.-.. .-+....+ .+|..++.+ ...++.|+++|
T Consensus 348 ----------L~~~~~~lt-----sfDeY~~El~sG~L~WSP~H~se~FW--------~ENa~kf~e~~~~llk~L~~iL 404 (480)
T 1ho8_A 348 ----------LENEYQELT-----SFDEYVAELDSKLLCWSPPHVDNGFW--------SDNIDEFKKDNYKIFRQLIELL 404 (480)
T ss_dssp ----------HHHHHHTCC-----HHHHHHHHHHHTCCCCCGGGGCHHHH--------HHHSGGGSSGGGHHHHHHHHHH
T ss_pred ----------HHHHHHhcc-----cHHHHHHHHhcCCcccCCCccchhHH--------HHHHHHHHhcchHHHHHHHHHH
Confidence 110000000 0111111111111000 00000000 011122222 23567889999
Q ss_pred cC----------CCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcc
Q 000184 421 TM----------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 481 (1890)
Q Consensus 421 ~~----------~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~ 481 (1890)
++ .|+.+..-||.-++.++...|.-+..+.+.|+...+++++.+++++++++|..|+..+-
T Consensus 405 ~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 405 QAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred hhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 73 36788888999999999998888888888899999999999999999999999988765
No 73
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.11 E-value=0.13 Score=71.65 Aligned_cols=225 Identities=12% Similarity=0.028 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhccc
Q 000184 18 TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR-SGSLAVKIQAATVLGSLCKEN 96 (1890)
Q Consensus 18 ~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~-~~~~~~~~~aa~~L~~L~~~~ 96 (1890)
....+.++++.+..+ .+.+.|..|-..|..+.+. .++++.+..+|. +.++.+|..|+.+|.+..+.+
T Consensus 22 ~~~~l~~~l~~l~~~-~~~~~r~~A~~~L~~~~~~-----------p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~ 89 (963)
T 2x19_B 22 TVENVEKALHQLYYD-PNIENKNLAQKWLMQAQVS-----------PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRY 89 (963)
T ss_dssp CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHS-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcC-----------HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhC
Confidence 466788888886654 3567788888888887764 366667777775 456799999999999976432
Q ss_pred ------hhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCC--CCc
Q 000184 97 ------ELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK--SGN 168 (1890)
Q Consensus 97 ------~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~--~~~ 168 (1890)
+.+..+. ...++.+.+. .++..-++...+.++..+...+.++.. .+.++.|+..++.... .++
T Consensus 90 w~~l~~~~~~~ir-~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~W-------p~~l~~l~~~~~~~~~~~~~~ 160 (963)
T 2x19_B 90 WSDIPTDQYESLK-AQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDAW-------PCAVADMVRLFQAEDSPVDGQ 160 (963)
T ss_dssp GGGSCGGGHHHHH-HHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTTS-------TTHHHHHHHHHCC------CH
T ss_pred HHhCCHHHHHHHH-HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcccc-------chHHHHHHHHHhhhccCCCcH
Confidence 2222222 2233333332 123577788888888887773222222 2456777777654100 133
Q ss_pred hHHHHHHHHHHHhccCC-----h-hHHHHHHh--cCCHHHHH----HhhcCCC--HHHHHHHHHHHHHHhhcCchhhhHh
Q 000184 169 VVDNLLTGALRNLSTST-----E-GFWAATVQ--AGGIDILV----KLLTLGQ--SSTQAHVCFLLACMMEEDVSVCSRV 234 (1890)
Q Consensus 169 ~v~~~~~~~L~~L~~~~-----~-~~~~~i~~--~g~v~~Lv----~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~~~i 234 (1890)
.....+..+|..++.+- + ..+..+.+ ...++.++ .++...+ ..+...+..++..... .+ . ...
T Consensus 161 ~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~-~-~~~ 237 (963)
T 2x19_B 161 GRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LE-V-PLQ 237 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SS-C-CGG
T ss_pred HHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CC-C-Ccc
Confidence 34456677777776310 0 11111110 12244444 4444332 2467777777743222 11 1 111
Q ss_pred hccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhc
Q 000184 235 LAADATKQLLKLLGSGNEASVRAEAAGALKSLSDH 269 (1890)
Q Consensus 235 ~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~ 269 (1890)
.....++.+++.+.. .+.+..|..+|..+...
T Consensus 238 ~~~~ll~~l~~~l~~---~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 238 DCEALIQAAFAALQD---SELFDSSVEAIVNAISQ 269 (963)
T ss_dssp GTHHHHHHHHHHTTS---TTTHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHhCC---chHHHHHHHHHHHHHcc
Confidence 224556777777743 46899999999998864
No 74
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.08 E-value=0.00017 Score=77.50 Aligned_cols=219 Identities=18% Similarity=0.185 Sum_probs=161.5
Q ss_pred hhCchHHHHHHHccCChHHHHHHHHHHHhccC--CchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhh
Q 000184 1367 AARCVEPLVSLLVTEFSPAQHSVVRALDKLVD--DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSC 1444 (1890)
Q Consensus 1367 ~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~--~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 1444 (1890)
..+.+..|..+|.+.++.++.++..+|.++-. +...+... -...++.++.++.+.|..+--.|++||..+-.+.|-.
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 34577888999999999999999999999982 23333333 2345899999999999999999999999998887655
Q ss_pred HHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhc
Q 000184 1445 KLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILE 1524 (1890)
Q Consensus 1445 ~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~ 1524 (1890)
...+.+ ++..+..++.+.++-...++|+.++.+.- .....+.+..+++++.+.+ +.++..++.+|.|++.
T Consensus 110 ~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~sLl~Skd--~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 110 SKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINELVVSPD--LYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHGG
T ss_pred HHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHHHHhCCC--hhHHHHHHHHHHHhhc
Confidence 555543 56788888888888889999999988711 1113567889999998877 9999999999999964
Q ss_pred CCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHh--------cCCCHHHH
Q 000184 1525 HPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL--------GSGIHILQ 1596 (1890)
Q Consensus 1525 ~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL--------~s~~~~v~ 1596 (1890)
..+... .-.+.+.-+-.+|+++|+++++.|+.+|..+...+-.. +.++-+.+++ .-+.|.++
T Consensus 180 ~S~D~~----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~------~~~~~~~~~~~~v~~l~~~~~~~~~~ 249 (265)
T 3b2a_A 180 SSADSG----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE------NVKIELLKISRIVDGLVYREGAPIIR 249 (265)
T ss_dssp GCSSCC----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS------CCHHHHHHHHHHHHHGGGCSSCHHHH
T ss_pred ccCCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH------hHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 322111 22345666778899999999999999999998854332 3333333333 35777777
Q ss_pred HHHHHHHHHH
Q 000184 1597 QRAVKALVSI 1606 (1890)
Q Consensus 1597 ~~A~~aL~~l 1606 (1890)
..|-..-.++
T Consensus 250 ~ka~~v~~~l 259 (265)
T 3b2a_A 250 LKAKKVSDLI 259 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7775544443
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.06 E-value=0.00012 Score=87.13 Aligned_cols=281 Identities=12% Similarity=0.020 Sum_probs=165.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHH
Q 000184 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 491 (1890)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i 491 (1890)
....+++++.++|...++..--.+.+++...++ .+ =++..|.+=++++++-++..|.++|+++.. ++..+.
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~- 139 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA- 139 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-
Confidence 445567899999999999888888887766322 11 356888888899999999999999999983 443332
Q ss_pred HhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCC
Q 000184 492 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTA 571 (1890)
Q Consensus 492 ~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~ 571 (1890)
..+.+.+.+.+.++-+|..|+.+..+|....++.- .+.+..+-+++.+.++.+.-.|..+|..++.+ +..
T Consensus 140 ----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~ 209 (355)
T 3tjz_B 140 ----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRL 209 (355)
T ss_dssp ----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHH
T ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chH
Confidence 45667788889999999999999999998766643 25888999999999999999999999999764 344
Q ss_pred cHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHH
Q 000184 572 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651 (1890)
Q Consensus 572 ~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~ 651 (1890)
++..++.-+....-.....-...+..+......++ .-.....++.+..+|++.++.+...|+.++..+......
T Consensus 210 a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~----~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~-- 283 (355)
T 3tjz_B 210 AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED----GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK-- 283 (355)
T ss_dssp HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc----hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH--
Confidence 56666666554321112222333443333332220 001233477788889999999999999999998763222
Q ss_pred HHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHH
Q 000184 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 726 (1890)
Q Consensus 652 ~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~ 726 (1890)
....++.+|..++.++++.++-.|++.|..+....|+.- ...-..+..++.+++..+...|..+|-
T Consensus 284 ---~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v------~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 284 ---ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV------TACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp -------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------------------
T ss_pred ---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH------HHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 124567888888988889999999999999876554321 224456678888888888777666653
No 76
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.06 E-value=0.019 Score=79.81 Aligned_cols=248 Identities=10% Similarity=0.095 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC------CCCHHHHHHHHHHHHHcccCChhcHHHHHhc----
Q 000184 425 NEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG------LSSEQQQECSVALLCLLSNENDDSKWAITAA---- 494 (1890)
Q Consensus 425 ~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~------~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~---- 494 (1890)
...|..|..+|..++...+ +.+.. ..++.+-+.+. +.+...++.|..+++.++.+....... ...
T Consensus 375 ~s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~-~~~~~~~ 449 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAG-VSSTNNL 449 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTB-CCCBCTT
T ss_pred cCcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCC-ccccccc
Confidence 3567788888888876532 11211 12333334444 567788999999999987421100000 000
Q ss_pred -CCcH----HHHHhccCC---CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhc
Q 000184 495 -GGIP----PLVQILESG---SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 566 (1890)
Q Consensus 495 -g~i~----~Lv~lL~~~---~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~ 566 (1890)
...+ .++..+.++ ++.+|..|+|+|+.++..-. ... -...++.++..+.+.++.++..|+.+|.+++.
T Consensus 450 ~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 450 LNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 1111 122334555 89999999999999987521 111 12367888888888889999999999999987
Q ss_pred CCC----------C--------CcHHHHHHHHhcCC---c--chHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHH
Q 000184 567 KSD----------T--------ATISQLTALLTSDL---P--ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK 623 (1890)
Q Consensus 567 ~~~----------~--------~~i~~L~~lL~~~~---~--~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~ 623 (1890)
+.+ . ..+..|..++.... + .....+..+++.+.......- ... -...++.|..
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~--~p~--~~~l~~~L~~ 601 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI--QPL--FPQLLAQFIE 601 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT--GGG--HHHHHHHHHH
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhh--hhH--HHHHHHHHHH
Confidence 421 1 22333445555531 1 133567777776654322110 000 0112344444
Q ss_pred Hh----cC-CCHHHHHHHHHHHHHHhhc-ChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000184 624 IL----SS-TKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 686 (1890)
Q Consensus 624 lL----~s-~~~~~~~~A~~aL~~L~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 686 (1890)
.+ ++ +++..+.....+|+.++.. .++.. .......+|++...+.....+....+...+..+.
T Consensus 602 ~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~-~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNL-PLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGH-HHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 33 23 4667777788899888876 33322 2334456788888886655555556666666654
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.94 E-value=6.4e-05 Score=89.44 Aligned_cols=266 Identities=14% Similarity=0.074 Sum_probs=154.2
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCC
Q 000184 1332 LCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGA 1411 (1890)
Q Consensus 1332 L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ga 1411 (1890)
.++++.+ ++..++...=-.+..+...++- .--.+..|.+=++++++-+|-.|.++|+++...+ ..+.+
T Consensus 73 v~kl~~s-~d~~lKrLvYLyl~~~~~~~~e-----~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-m~~~l----- 140 (355)
T 3tjz_B 73 MTKLFQS-NDPTLRRMCYLTIKEMSCIAED-----VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDST-MLQAI----- 140 (355)
T ss_dssp HHGGGGC-CCHHHHHHHHHHHHHHTTTSSC-----GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-THHHH-----
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-HHHHH-----
Confidence 3455554 3445555544444444443221 1134556677778999999999999999997444 33333
Q ss_pred hHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccc
Q 000184 1412 VIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSA 1491 (1890)
Q Consensus 1412 v~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~ 1491 (1890)
.+++-..|.+.++.||++|+.|..++....|+. ++ +.++.+.+++.+.++.+...+..++..+.....
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~----v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~------- 208 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV----VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR------- 208 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH----HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH----HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch-------
Confidence 678889999999999999999999999887653 33 689999999999888887777677766654321
Q ss_pred cCChHHHHHHhhcc-CCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccc
Q 000184 1492 AKVVEPLFLLLTRS-EFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQ 1570 (1890)
Q Consensus 1492 ~~~v~~Li~lL~~~-~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~ 1570 (1890)
..+..|+..+.+. -..++.+..-++.+..+...++.. .....++.|...|++.++.|...|++++..+....
T Consensus 209 -~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~- 281 (355)
T 3tjz_B 209 -LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS- 281 (355)
T ss_dssp -HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC------
T ss_pred -HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC-
Confidence 2467777777652 113766666566555544332100 23456788899999999999999999999876521
Q ss_pred cccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCC
Q 000184 1571 LQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPS 1633 (1890)
Q Consensus 1571 ~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~ 1633 (1890)
... -..++.+|..+|.+.++++|..|++.|..+....|..+..+ -..++.++.++|..
T Consensus 282 --~~~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~--n~~ie~li~d~n~s 339 (355)
T 3tjz_B 282 --AKE-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTAC--NLDLENLVTDANRS 339 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC------------------------------
T ss_pred --HHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHH--HHHHHHHccCCcHh
Confidence 111 13457888899999999999999999999998877665544 46677777777753
No 78
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.91 E-value=0.018 Score=80.24 Aligned_cols=592 Identities=12% Similarity=0.072 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhccc-
Q 000184 19 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR-SGSLAVKIQAATVLGSLCKEN- 96 (1890)
Q Consensus 19 ~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~-~~~~~~~~~aa~~L~~L~~~~- 96 (1890)
...+.++++.+.+. +...|..|-..|..+.+.+ ++++.+..+|. +.++.+|..|+.+|.+..+.+
T Consensus 6 ~~~l~~~l~~~~~~--d~~~r~~A~~~L~~~~~~p-----------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w 72 (971)
T 2x1g_F 6 IARLEEAVVSFYRS--NSQNQAITHEWLTDAEASP-----------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHW 72 (971)
T ss_dssp -----CTHHHHHTS--TTTC----CHHHHHTTTST-----------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCH-----------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccH
Confidence 34577778777654 3456777888877766543 55556777775 456799999999999976431
Q ss_pred -----hhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCC---CCc
Q 000184 97 -----ELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK---SGN 168 (1890)
Q Consensus 97 -----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~---~~~ 168 (1890)
+.+.. ++...++.+.+.- .+..-++...+.+|..+.....+ . . .+.++.|+..++.... .++
T Consensus 73 ~~l~~~~~~~-ir~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-~-----W--p~~l~~l~~~~~~~~~~~~~~~ 142 (971)
T 2x1g_F 73 HEVPPENREE-LKQKILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-E-----W--PGAIEEVINTFQNQRMPNVSAD 142 (971)
T ss_dssp GGCCGGGHHH-HHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-C-------------HHHHHHHHTC----CHH
T ss_pred hhCCHHHHHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc-c-----c--cHHHHHHHHHHhccccccCCCH
Confidence 22222 2222344444432 24577788888888888773222 1 1 3467777777765211 123
Q ss_pred hHHHHHHHHHHHhccC-----ChhHH----HHHHhcCCHHHHHHhh----cC-CCH-------HHHHHHHHHHHHHhh--
Q 000184 169 VVDNLLTGALRNLSTS-----TEGFW----AATVQAGGIDILVKLL----TL-GQS-------STQAHVCFLLACMME-- 225 (1890)
Q Consensus 169 ~v~~~~~~~L~~L~~~-----~~~~~----~~i~~~g~v~~Lv~lL----~~-~~~-------~v~~~a~~~L~~L~~-- 225 (1890)
.....+..+|..++.+ ....+ ..+. ..++.++.++ .. .++ +++..+..++.....
T Consensus 143 ~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~ 220 (971)
T 2x1g_F 143 VQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI 220 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC
Confidence 3455667777777631 11111 1121 2355555544 22 121 678888888865443
Q ss_pred cCchhhhHhhccchHHHHHHHHc---------------CCCCHhHHHHHHHHHHHhhhcCHH-HHHHHHhcCChHHHHHh
Q 000184 226 EDVSVCSRVLAADATKQLLKLLG---------------SGNEASVRAEAAGALKSLSDHCKD-ARREIAGSNGIPAMINA 289 (1890)
Q Consensus 226 ~~~~~~~~i~~~g~i~~Lv~lL~---------------~~~~~~~~~~Aa~aL~~Ls~~~~~-~~~~i~~~g~i~~Lv~l 289 (1890)
.-+.. .....++.+.. |. +..+++.+..|+.+|..+....+. .+..... ..++.++.+
T Consensus 221 ~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~ 294 (971)
T 2x1g_F 221 GYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDS 294 (971)
T ss_dssp CCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHH
T ss_pred CcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHh
Confidence 22211 33445566665 41 112357899999999998874321 1111111 112333332
Q ss_pred hcCCCccccchhhh---HHHHHHHHHHHHHhhCCCchhhh-hhhccccCCCChhhhhhhHhHHHHHHHHhcccccCCCCC
Q 000184 290 TIAPSKEFMQGEYA---QALQENAMCALANISGGLSNVIS-SLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPS 365 (1890)
Q Consensus 290 l~~~~~~~~~~~~~---~~l~e~a~~aL~nl~~~~~~~i~-~l~~~~~~~~~~~~~~~~~gal~~ll~~~~~~~~~~~~~ 365 (1890)
...-.+ .. ...+ .+.....+..+..+.......+. .+. .+ ... ..+-+.
T Consensus 295 ~~~~~~-~~-~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~----~~-~~~----~~~~l~---------------- 347 (971)
T 2x1g_F 295 LSEITK-TE-WKRENDNEDIIVHIYMLFVSSVERHSTLLLSGIT----SA-DPE----LSILVH---------------- 347 (971)
T ss_dssp HHHHHH-HH-SSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHH----TC-CHH----HHHHHH----------------
T ss_pred HHHHHH-HH-hcccccchHHHHHHHHHHHHHHHHHHHHHHHHhc----cC-ccc----ccHHHH----------------
Confidence 210000 00 0001 12223333333332211000000 000 00 000 000000
Q ss_pred ChhhhHHHHHhhcCC----CCChHHHHHHHHHHHHhhC---------C-Cccchhhhh--cCcHHHHHHHhcCC------
Q 000184 366 DPLIVEQTLVNQFKP----RLPFLVQERTIEALASLYG---------N-PLLSIKLEN--SEAKRLLVGLITMA------ 423 (1890)
Q Consensus 366 ~~~~i~~~L~~ll~~----~~~~~~~~~a~~aL~~L~~---------~-~~~~~~l~~--~g~i~~Lv~lL~~~------ 423 (1890)
.+.+.|..+... ..++.+...++..+..+++ . +.....+.. ...++.++..+..+
T Consensus 348 ---~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~ 424 (971)
T 2x1g_F 348 ---RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLA 424 (971)
T ss_dssp ---HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTS
T ss_pred ---HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 122333333311 1122245555555444422 0 100000000 12233333333211
Q ss_pred --CH-------HHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCC-----CCHHHHHHHHHHHHHcccCChhcHH
Q 000184 424 --TN-------EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-----SSEQQQECSVALLCLLSNENDDSKW 489 (1890)
Q Consensus 424 --~~-------~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~nL~~~~~~~~~ 489 (1890)
++ ..|..+..+|..++..-++. +.. -..+.+-..+.+ .+...++.++.+++.++.+..+..
T Consensus 425 ~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~- 499 (971)
T 2x1g_F 425 KWSSDDLECFRCYRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE- 499 (971)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------
T ss_pred ccCHhHHHHHHHHHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-
Confidence 11 34455666676666432211 100 112222233332 567789999999999986433221
Q ss_pred HHHhcCCcHHHHHhc---c--CCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHH
Q 000184 490 AITAAGGIPPLVQIL---E--SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 564 (1890)
Q Consensus 490 ~i~~~g~i~~Lv~lL---~--~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L 564 (1890)
...++.++.++ . +.++.+|..++++++.++..-......+ ...++.|+..+ + +.++..|+.++.++
T Consensus 500 ----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l 570 (971)
T 2x1g_F 500 ----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKEL 570 (971)
T ss_dssp -----CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHH
Confidence 12333344333 2 3489999999999999986311111111 13556677666 3 78999999999999
Q ss_pred hcCCCC-------CcHHHHHHHHhcC--CcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHH----HhcCC--C
Q 000184 565 IHKSDT-------ATISQLTALLTSD--LPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK----ILSST--K 629 (1890)
Q Consensus 565 ~~~~~~-------~~i~~L~~lL~~~--~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~----lL~s~--~ 629 (1890)
+..... ..+..+..++... +.+.+..+.++++.+....+..+. ...+ ..-++++.. ++... +
T Consensus 571 ~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~-~~~~--~~ll~~l~~~l~~~~~~~~~~ 647 (971)
T 2x1g_F 571 CRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI-PKYL--DIIVSPCFEELQAICQADSKT 647 (971)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH-HHHH--HHHHHHHHHHHHHHHTC---C
T ss_pred HHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH-HHHH--HHHHHHHHHHHHHHHhcCCCC
Confidence 975432 2223344555553 456788899999988764332221 1111 112333333 33333 4
Q ss_pred HHHHHHHHHHHHHHhhcChhHH---------------HHHHHcCchHHHHHhhc--CCCHHHHHHHHHHHHHHHcc
Q 000184 630 EETQAKSASALAGIFETRKDLR---------------ESSIAVKTLWSVMKLLD--VGSECILVEASRCLAAIFLS 688 (1890)
Q Consensus 630 ~~~~~~A~~aL~~L~~~~~~~~---------------~~~~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~ 688 (1890)
++.+.....++..|+..-.... -.......+|.+..++. ..+..+...++++++.++..
T Consensus 648 ~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 648 PAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 4455555555555543210000 01223456777777763 34778999999999998653
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.90 E-value=0.00061 Score=69.66 Aligned_cols=214 Identities=14% Similarity=0.158 Sum_probs=160.3
Q ss_pred hcCChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhC-Ch
Q 000184 1281 ARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFG-NT 1359 (1890)
Q Consensus 1281 ~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~-~~ 1359 (1890)
++..+..++..|.+.--.++..|+..+..++..-+.-. ...+..|+-+++.+..-....+.++.++.++. +|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~-------epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY-------EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH-------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH-------HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 44567899999999888899999999999997433211 24666777777766555667788888888743 22
Q ss_pred hhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhc
Q 000184 1360 RIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLG 1438 (1890)
Q Consensus 1360 ~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~ 1438 (1890)
+.. .+.+|.+..-++-+++.++.....+|..++ .+++.... ++..+..|+.+.|..-|-.|+.-++.++
T Consensus 103 e~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 103 ELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HHH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HHH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 221 134556666667899999999999999998 67665444 4788999999999999999999999999
Q ss_pred cCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHH
Q 000184 1439 KDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQV 1518 (1890)
Q Consensus 1439 ~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~a 1518 (1890)
.+.+... ...+|.|..+|.+.++.|+..+.++|.+++...... -+.+..-+.-+++.+ ..+++..-.+
T Consensus 173 en~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl-----Rkii~~kl~e~~D~S--~lv~~~V~eg 240 (253)
T 2db0_A 173 ENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL-----RKVVIKRLEELNDTS--SLVNKTVKEG 240 (253)
T ss_dssp TTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH-----HHHHHHHHHHCCCSC--HHHHHHHHHH
T ss_pred ccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH-----HHHHHHHHHHhcCcH--HHHHHHHHHH
Confidence 8876554 348899999999999999999999999997654311 112333334445544 8899988888
Q ss_pred HHHhh
Q 000184 1519 LVNIL 1523 (1890)
Q Consensus 1519 L~nl~ 1523 (1890)
|..++
T Consensus 241 L~rl~ 245 (253)
T 2db0_A 241 ISRLL 245 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 80
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.89 E-value=0.017 Score=80.49 Aligned_cols=705 Identities=11% Similarity=0.031 Sum_probs=327.8
Q ss_pred hhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCC-ccccchhhhcC
Q 000184 74 LRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKD-YVGSKIFSTEG 151 (1890)
Q Consensus 74 L~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~ls~~~~~~-~~~~~~~~~~g 151 (1890)
+.+++++.|..|-..|..+-+.++ +++.+..+|. +.+.++|..|+..|++.-...-.. ....+..++..
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~~p~---------~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEASPQ---------AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp HHTSTTTC----CHHHHHTTTSTH---------HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 334556667777777777654443 3445566664 457889999999999864411100 01112233333
Q ss_pred ChHHHHHHHhccCCCCchHHHHHHHHHHHhccCC-hhHHHHHHhcCCHHHHHHhhcCC------CHHHHHHHHHHHHHHh
Q 000184 152 VVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLG------QSSTQAHVCFLLACMM 224 (1890)
Q Consensus 152 ~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~------~~~v~~~a~~~L~~L~ 224 (1890)
+++.+.......+.++..++.++..++... + .|. +.++.|+..++++ ++.....+..+|..+.
T Consensus 87 ----ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp-----~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 156 (971)
T 2x1g_F 87 ----ILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWP-----GAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIP 156 (971)
T ss_dssp ----HHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C-----------HHHHHHHHTC----CHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-ccc-----HHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhH
Confidence 344443322224568888888888776432 2 565 4578899888875 5667888888887776
Q ss_pred hc----Cch-hhhHhhc--cchHHHH----HHHHcCCCCH-------hHHHHHHHHHHHhhh--cCHHHHHHHHhcCChH
Q 000184 225 EE----DVS-VCSRVLA--ADATKQL----LKLLGSGNEA-------SVRAEAAGALKSLSD--HCKDARREIAGSNGIP 284 (1890)
Q Consensus 225 ~~----~~~-~~~~i~~--~g~i~~L----v~lL~~~~~~-------~~~~~Aa~aL~~Ls~--~~~~~~~~i~~~g~i~ 284 (1890)
.. .+. .+..+.+ ...++.+ .+.+....+. +++..+..++..... .-+.. ....-++
T Consensus 157 EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~ 232 (971)
T 2x1g_F 157 EEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITA 232 (971)
T ss_dssp HHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHH
Confidence 32 110 1111100 1123333 3344322111 577778888865443 11211 1112233
Q ss_pred HHHHhhc-----C---CCccccchhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhHhHHHHHHHHhc
Q 000184 285 AMINATI-----A---PSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 356 (1890)
Q Consensus 285 ~Lv~ll~-----~---~~~~~~~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~gal~~ll~~~~ 356 (1890)
.+.. +. . .+..+. ...++.+++.|+.+|..+...... .+....+. ..++.++.+.
T Consensus 233 ~l~~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~l~~i~~~~~~-----------~~~~~~~~---~l~~~~~~~~- 295 (971)
T 2x1g_F 233 VLLE-VVHKCYWPCIHAGDGCM-TADENELAESCLKTMVNIIIQPDC-----------HNYPKTAF---VLIKMFLDSL- 295 (971)
T ss_dssp HHHH-HHHHHHSSSCC---CCC-CHHHHHHHHHHHHHHHHHHHCSGG-----------GGCHHHHH---HHHHHHHHHH-
T ss_pred HHHh-hhhhhcccccccccccc-CcCCcHHHHHHHHHHHHHHcCccc-----------cccHHHHH---HHHHHHHHhH-
Confidence 3443 20 0 000000 013478899999999987653110 00000000 0111111110
Q ss_pred ccccCCCCCChhhhHHHHHhhcCCCCC--hHHHHHHHHHHHHhhCC-Cc-cc-----------hhhhhcCcHHHHHHHhc
Q 000184 357 SKAESTKPSDPLIVEQTLVNQFKPRLP--FLVQERTIEALASLYGN-PL-LS-----------IKLENSEAKRLLVGLIT 421 (1890)
Q Consensus 357 ~~~~~~~~~~~~~i~~~L~~ll~~~~~--~~~~~~a~~aL~~L~~~-~~-~~-----------~~l~~~g~i~~Lv~lL~ 421 (1890)
+.+.+-....+. +......++.+..+... +. .. ..+ ...++.++.++.
T Consensus 296 ---------------~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~ 358 (971)
T 2x1g_F 296 ---------------SEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILV--HRIVQEILHCTD 358 (971)
T ss_dssp ---------------HHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHH--HHHHHHHHHHHH
T ss_pred ---------------HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHH--HHHHHHHHHHHc
Confidence 000000111111 11233333433333211 11 00 111 123445555543
Q ss_pred C-----CCHHHHHHHHHHHHHhhcc---------CchhhHHHHh--cCcHHHHHHhhCCCC--------H-------HHH
Q 000184 422 M-----ATNEVQEELVRALLKLCNN---------EGSLWRALQG--REGIQLLISLLGLSS--------E-------QQQ 470 (1890)
Q Consensus 422 ~-----~~~~v~~~a~~aL~~L~~~---------~~~~~~~i~~--~g~i~~Lv~lL~~~~--------~-------~v~ 470 (1890)
. .++++...++..+..++.. ....+..+.. ...++.++..+.-++ + ..|
T Consensus 359 ~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R 438 (971)
T 2x1g_F 359 KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYR 438 (971)
T ss_dssp CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHH
T ss_pred CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHH
Confidence 3 4677888888887776541 0111111111 133455555553221 1 244
Q ss_pred HHHHHHHHHcccCChhc-HHHHHhcCCcHHHHHhccC-----CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHH
Q 000184 471 ECSVALLCLLSNENDDS-KWAITAAGGIPPLVQILES-----GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLW 544 (1890)
Q Consensus 471 ~~A~~aL~nL~~~~~~~-~~~i~~~g~i~~Lv~lL~~-----~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ 544 (1890)
..+..+|..++...++. -.. ..+.+-+.+.. .+-..++.++.+++.++....+.. ...++.++.
T Consensus 439 ~~~~~~l~~~~~~~~~~~l~~-----~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~ 508 (971)
T 2x1g_F 439 QDISDTFMYCYDVLNDYILEI-----LAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMR 508 (971)
T ss_dssp HHHHHHHHHHHTTCTTHHHHH-----HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHH
Confidence 55666776666422211 111 11222222322 455788999999999987432211 234455555
Q ss_pred Hh---h--cCChhHHHHHHHHHHHHhcC--CCCCcH----HHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhh
Q 000184 545 LL---K--NGSANGKEIAAKTLNHLIHK--SDTATI----SQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSA 613 (1890)
Q Consensus 545 ll---~--~~~~~~~~~Aa~aL~~L~~~--~~~~~i----~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 613 (1890)
++ . +.++.++..+++++..++.. .++..+ +.++..+ + +.++..|..++..++.... .. +....
T Consensus 509 ~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~-~~-l~p~~- 582 (971)
T 2x1g_F 509 VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ-LQ-LKPYA- 582 (971)
T ss_dssp HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH-HH-HHHHH-
T ss_pred HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH-Hh-ccccH-
Confidence 44 2 34788999999999998753 223333 4444455 2 7899999999998875322 11 11111
Q ss_pred hcchHHHHHHHhcC--CCHHHHHHHHHHHHHHhhcCh-hHHHHHHHcCchHHHHHhh----cCC--CHHHHHH---HHHH
Q 000184 614 ANDAVETMIKILSS--TKEETQAKSASALAGIFETRK-DLRESSIAVKTLWSVMKLL----DVG--SECILVE---ASRC 681 (1890)
Q Consensus 614 ~~~~i~~Lv~lL~s--~~~~~~~~A~~aL~~L~~~~~-~~~~~~~~~g~i~~Lv~lL----~~~--~~~v~~~---a~~a 681 (1890)
...+..|.+++.+ .+...+.....+++.++...+ +... -.-...+++++..+ ... +++.... +...
T Consensus 583 -~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~ 660 (971)
T 2x1g_F 583 -DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIP-KYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNM 660 (971)
T ss_dssp -HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHH-HHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 2235556667766 367889999999999887532 2211 22233455555443 222 3323333 3334
Q ss_pred HHHHHccCchh-----------hHHHHHhCCChHHHHHHhCC--CCHHHHHHHHHHHHHHhc--CchHHHHHHhcCcHHH
Q 000184 682 LAAIFLSVREN-----------REVAAVARDALSPLVVLAGS--PVLEVAEQATCALANLIL--DSEVSEKAIAEEIILP 746 (1890)
Q Consensus 682 L~~L~~~~~~~-----------~~~~~~~~~~v~~Lv~ll~~--~~~ev~~~aa~aL~nL~~--~~~~~~~~~~~~~v~~ 746 (1890)
|+.+....... ..........++.+..++.. .+.++.+.+++++.+++. +++... + -..+++.
T Consensus 661 L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p-~-l~~~~~~ 738 (971)
T 2x1g_F 661 ISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQP-M-LQDLCLF 738 (971)
T ss_dssp HHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CT-H-HHHHHHH
T ss_pred HHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccc-c-HHHHHHH
Confidence 44333211100 00112234577777777743 367899999999999762 222111 1 1223333
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhcCccchhHhhhh--hhhccHHHHHHHhhcc-------CcccchHHHHHHHHHHHh
Q 000184 747 ATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCV--NRAGTVLALVSFLESA-------SGSVATSEALDALAILSR 817 (1890)
Q Consensus 747 L~~ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~--~~~g~l~~li~~l~~~-------~~~v~~~~al~~L~~l~~ 817 (1890)
++..++.... ....+.+..+......+..+...+ .-...+......+... ++++. +..+..+..+++
T Consensus 739 l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~-~~~f~ll~~~l~ 814 (971)
T 2x1g_F 739 IVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTM-ETFFGCLTQIIK 814 (971)
T ss_dssp HHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHH-HHHHHHHHHHHH
T ss_pred HHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHH-HHHHHHHHHHHH
Confidence 4333333222 235566666665443321111100 0111222333444332 35566 777777777776
Q ss_pred cCCCCCCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHH
Q 000184 818 SGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRL 864 (1890)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l 864 (1890)
.....=+..+ ...+..+.-.+.++...++.....+...+..+
T Consensus 815 ~~p~~~~~s~-----~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~ 856 (971)
T 2x1g_F 815 KIPQVLEDKT-----LAYDRLVFYAQRGMTLPESGAIRNSIQFLTHF 856 (971)
T ss_dssp SSGGGGGCTT-----SCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHH
T ss_pred hCcHHHcCCc-----ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 5543101111 00122233334455556677777777766555
No 81
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.86 E-value=0.00014 Score=83.44 Aligned_cols=187 Identities=13% Similarity=0.116 Sum_probs=134.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC-CCCHHHHHHHHHHHHHcccCChhcHHHHHh
Q 000184 415 LLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITA 493 (1890)
Q Consensus 415 ~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~ 493 (1890)
.+.+.+.+.++..|..++..|..+...++.....- -...++.|...+. +.+..++..|+.+|..|+..-...-.. .-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 36778889999999999999999887633211000 0134678888894 999999999999999998532211111 11
Q ss_pred cCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcH
Q 000184 494 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATI 573 (1890)
Q Consensus 494 ~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i 573 (1890)
...++.++..+.+.++.+|+.|..+|.++.... ... ..++.+...+++.++.+|..+...|..+.....+..
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~- 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYAST-SLE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA- 168 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG-
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC-
Confidence 237899999999999999999999999998742 211 256778888888888899988888888654322110
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc
Q 000184 574 SQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1890)
Q Consensus 574 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~ 646 (1890)
.. ...+ ...+|.|..++.+.++++|..|..++..++..
T Consensus 169 ------------~~-----------------~~~l------~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 ------------LN-----------------KKLL------KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp ------------CC-----------------HHHH------HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ------------cc-----------------HHHH------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 00 0001 12388899999999999999999999998864
No 82
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.82 E-value=0.0003 Score=80.62 Aligned_cols=177 Identities=15% Similarity=0.120 Sum_probs=134.9
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhcC-CC------CCcHHHHHHHHh-cCCcchHHHHHHHHHHHhhhcCchHHHHHh
Q 000184 540 PALLWLLKNGSANGKEIAAKTLNHLIHK-SD------TATISQLTALLT-SDLPESKVYVLDALKSMLSVVSFSDILREG 611 (1890)
Q Consensus 540 ~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~-~~------~~~i~~L~~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 611 (1890)
+.+.+.+.+.++..|..|+..|..+... ++ ...++.+..++. +.+..++..+..+++.++......- ...
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~--~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF--SNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG--HHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH--HHH
Confidence 3477888888999999999999999765 22 133455667774 7788889999999999886332211 111
Q ss_pred hhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccC-c
Q 000184 612 SAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSV-R 690 (1890)
Q Consensus 612 ~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~-~ 690 (1890)
....+|.|++.+.+.++.+|..|..+|..++...+ . ...+|.+...+.+.++.++..++..|..+.... +
T Consensus 96 --~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 --ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-L------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp --HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-H------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-H------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 12348999999999999999999999999997642 1 236788899999999999999999999965443 2
Q ss_pred h-hhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000184 691 E-NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 691 ~-~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~ 729 (1890)
+ .... .. ...++.|+.++.+++.+||..|..+++.+.
T Consensus 167 ~~~~~~-~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 167 TALNKK-LL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp GGCCHH-HH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCccHH-HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 2 1112 12 357899999999999999999999999887
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.81 E-value=0.0012 Score=67.44 Aligned_cols=214 Identities=15% Similarity=0.211 Sum_probs=155.2
Q ss_pred HhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChH
Q 000184 450 QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSED 528 (1890)
Q Consensus 450 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~e~a~~aL~~L~~~~~~ 528 (1890)
.+...+..++++|.++-+.+|.+|...+.+++...++....+ +..|+.+++ +..-......+.+++.++...|+
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 345678899999999999999999999999998777654433 334555544 45666656688899999986665
Q ss_pred HHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC---CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCch
Q 000184 529 IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD---TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFS 605 (1890)
Q Consensus 529 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~---~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~ 605 (1890)
.-. +.+|.+..-.+-|+++.+-+-+.+|..+.+..+ +..+..+..++.+.+..-+.. +|..+..+....
T Consensus 104 ~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~---aLnFi~alGen~ 175 (253)
T 2db0_A 104 LVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLT---ALNFIEAMGENS 175 (253)
T ss_dssp HHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHH---HHHHHHTCCTTT
T ss_pred HHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHH---HHHHHHHHhccC
Confidence 432 367888888888999999999999999987554 244555666777665443333 333333443222
Q ss_pred HHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000184 606 DILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAI 685 (1890)
Q Consensus 606 ~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 685 (1890)
- + .+ ..-+|.|..+|.+.++.+|..|..+|.+++..++..+. +|..-++-+.+.+..++...-..|..+
T Consensus 176 ~--~-yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 176 F--K-YV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp H--H-HH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred c--c-cc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 1 1 11 34589999999999999999999999999999887664 344455666788888888888888877
Q ss_pred Hc
Q 000184 686 FL 687 (1890)
Q Consensus 686 ~~ 687 (1890)
..
T Consensus 245 ~l 246 (253)
T 2db0_A 245 LL 246 (253)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 84
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.67 E-value=0.16 Score=70.67 Aligned_cols=216 Identities=13% Similarity=0.098 Sum_probs=124.2
Q ss_pred hcCChhHHHHHHHHHHHHhcCCC---CCcHHHHHHHH---hcCCcchHHHHHHHHHHHhhh-cCchHHHHHhhhhcchHH
Q 000184 547 KNGSANGKEIAAKTLNHLIHKSD---TATISQLTALL---TSDLPESKVYVLDALKSMLSV-VSFSDILREGSAANDAVE 619 (1890)
Q Consensus 547 ~~~~~~~~~~Aa~aL~~L~~~~~---~~~i~~L~~lL---~~~~~~~~~~a~~aL~~L~~~-~~~~~~~~~~~~~~~~i~ 619 (1890)
.+.++..++.+..+++.++.... ...++.++..+ .++++.++..++.+++.++.. ...++.+ ...++
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l------~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI------NSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH------TTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH------HHHHH
Confidence 34567788999999999987643 24456666654 334566788888998887763 2222211 34477
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcC--CCHHHHHHHHHHHHHHHccCchhhHHHH
Q 000184 620 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV--GSECILVEASRCLAAIFLSVRENREVAA 697 (1890)
Q Consensus 620 ~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~L~~~~~~~~~~~~ 697 (1890)
.|+..|.+ +.++..|+.++.+++...+..-. ..-...+..|..++.. -+...+.....+++.++...+..... -
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~-p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~-~ 608 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLP-PYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL-K 608 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCT-TTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH-H
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH-H
Confidence 88887754 78999999999999975432100 0011233444445543 35678888899999987654311111 1
Q ss_pred HhCCChHHHHHHh----CC-CCHHHHHHHHHHHH---HHh--cC---c-h----------------HHHHHHhcCcHHHH
Q 000184 698 VARDALSPLVVLA----GS-PVLEVAEQATCALA---NLI--LD---S-E----------------VSEKAIAEEIILPA 747 (1890)
Q Consensus 698 ~~~~~v~~Lv~ll----~~-~~~ev~~~aa~aL~---nL~--~~---~-~----------------~~~~~~~~~~v~~L 747 (1890)
.-...++++...+ .. .+++.+......+. .+. .. + . .....+...+.+.+
T Consensus 609 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 609 NLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 1133444554433 22 35665554444443 333 11 1 0 00112345566666
Q ss_pred HHHHhcC--CcchHHHHHHHHHHHhhc
Q 000184 748 TRVLCEG--TISGKTLAAAAIARLLHS 772 (1890)
Q Consensus 748 ~~ll~~~--~~~~~~~aa~aL~~L~~~ 772 (1890)
.+++... +..+.+.+..++.++...
T Consensus 689 ~~~l~~~~~~~~v~e~~~~~l~~~~~~ 715 (963)
T 2x19_B 689 QKVLSKWLNDAQVVEAVCAIFEKSVKT 715 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHh
Confidence 6666543 344777788888877653
No 85
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.58 E-value=0.24 Score=68.58 Aligned_cols=549 Identities=10% Similarity=0.068 Sum_probs=276.4
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcC--CCHHHHHHHHHHHHHHhhcCch----
Q 000184 156 LWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQAHVCFLLACMMEEDVS---- 229 (1890)
Q Consensus 156 L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~~L~~~~~~---- 229 (1890)
+.+.+......+...+ +...|..+- ..+ |....|..++.+ .+..+|..|+-.|.+....+-.
T Consensus 7 l~~~L~~~~spd~~~r--Ae~~L~~~~-~~p---------~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~ 74 (960)
T 1wa5_C 7 VAKFLAESVIASTAKT--SERNLRQLE-TQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG 74 (960)
T ss_dssp HHHHHHHTTSGGGHHH--HHHHHHHHH-TST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHhh-cCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4445544333344444 566666553 222 345567777754 3578899999999887632110
Q ss_pred --hhhHhhccchH-HHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHH
Q 000184 230 --VCSRVLAADAT-KQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQAL 306 (1890)
Q Consensus 230 --~~~~i~~~g~i-~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l 306 (1890)
.... -+...+ ..+++.+.+. +..+|...+.++..++...-. . ...+.++.|+..+.+++ ...
T Consensus 75 ~~~l~~-~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~---~Wp~ll~~L~~~l~s~~---------~~~ 139 (960)
T 1wa5_C 75 NHLLPA-NNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-D---RWPTLLSDLASRLSNDD---------MVT 139 (960)
T ss_dssp CBSSCH-HHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-T---TCTTHHHHHHTTCCSSC---------TTH
T ss_pred CCCCCH-HHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhhCc-c---chhHHHHHHHHHhCCCC---------HHH
Confidence 0000 011112 2355555554 367999999999998863211 0 12356788888886643 346
Q ss_pred HHHHHHHHHHhhCCCchhhhhhhccccCCCChhhhhhhH-hHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCC-C-
Q 000184 307 QENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTL-GALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL-P- 383 (1890)
Q Consensus 307 ~e~a~~aL~nl~~~~~~~i~~l~~~~~~~~~~~~~~~~~-gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~-~- 383 (1890)
++.++.+|..++...++. +.+++....+.... .-.+.++.+|. .+...+.... +
T Consensus 140 ~~~aL~~l~~i~~~~~~~-------~~~~~~~~~l~~~l~~~~~~ll~~~~----------------~~~~~l~~~~~~~ 196 (960)
T 1wa5_C 140 NKGVLTVAHSIFKRWRPL-------FRSDELFLEIKLVLDVFTAPFLNLLK----------------TVDEQITANENNK 196 (960)
T ss_dssp HHHHHHHHHHHHGGGTTS-------CCCHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHTTCCC--C
T ss_pred HHHHHHHHHHHHHHHHHh-------hcChHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhcCCCH
Confidence 778888888877522110 00000000000000 11122222221 1111122211 1
Q ss_pred h------HHHHHHHHHHHHhh--CCCcc-chhhhhcCcHHHHHHHhcC------CC---------HHHHHHHHHHHHHhh
Q 000184 384 F------LVQERTIEALASLY--GNPLL-SIKLENSEAKRLLVGLITM------AT---------NEVQEELVRALLKLC 439 (1890)
Q Consensus 384 ~------~~~~~a~~aL~~L~--~~~~~-~~~l~~~g~i~~Lv~lL~~------~~---------~~v~~~a~~aL~~L~ 439 (1890)
. .+...++.++..+. ..|+. ...+ ...++.+..++.. .+ ..++.+++.+|..+.
T Consensus 197 ~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~ 274 (960)
T 1wa5_C 197 ASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYT 274 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHH
Confidence 0 11222444444442 22221 1111 1223444455532 11 256788888888877
Q ss_pred ccCchhhHHHHhcCcHHHHHHhhC-----CCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHH-----Hhcc----
Q 000184 440 NNEGSLWRALQGREGIQLLISLLG-----LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV-----QILE---- 505 (1890)
Q Consensus 440 ~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv-----~lL~---- 505 (1890)
...+....... ...++..++++. ..++.+...+...+..++. .+..+..+...+.++.++ ..+.
T Consensus 275 ~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~-~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~ 352 (960)
T 1wa5_C 275 TRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR-IPKYFEIFNNESAMNNITEQIILPNVTLREE 352 (960)
T ss_dssp HHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT-SHHHHGGGCSHHHHHHHHHHTHHHHHSCCGG
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC-cHhHHHHHcCchHHHHHHHHHhHHhcCCCHH
Confidence 55433221111 123455555553 3467788888888888874 333222221112333333 1211
Q ss_pred C-----CC--------------HHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhh------cCChhHHHHHHHH
Q 000184 506 S-----GS--------------AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK------NGSANGKEIAAKT 560 (1890)
Q Consensus 506 ~-----~~--------------~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~------~~~~~~~~~Aa~a 560 (1890)
+ .+ ...|..|...|..++...+ ..+.. ..++.+-+.+. +.+++.++.|..+
T Consensus 353 d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~a 428 (960)
T 1wa5_C 353 DVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYL 428 (960)
T ss_dssp GTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 0 01 1355667777777776422 11111 12233333444 3456788899999
Q ss_pred HHHHhcCC---C--CC------cHHH-----HHHHHhcC---CcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHH
Q 000184 561 LNHLIHKS---D--TA------TISQ-----LTALLTSD---LPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETM 621 (1890)
Q Consensus 561 L~~L~~~~---~--~~------~i~~-----L~~lL~~~---~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L 621 (1890)
++.++... + .. .+.+ ++..+.+. ++-++..++.+++.++.... ++.. ...++.+
T Consensus 429 lgaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l------~~~l~~l 501 (960)
T 1wa5_C 429 FTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQL------IELMPIL 501 (960)
T ss_dssp HHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHH------HHHHHHH
T ss_pred HHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHH------HHHHHHH
Confidence 99997532 1 11 3333 23335665 67788899999998877542 2322 2347888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhhcCh-------hH-HHHH--HHcCchHHHHHhhcCCC---HH--HHHHHHHHHHHHH
Q 000184 622 IKILSSTKEETQAKSASALAGIFETRK-------DL-RESS--IAVKTLWSVMKLLDVGS---EC--ILVEASRCLAAIF 686 (1890)
Q Consensus 622 v~lL~s~~~~~~~~A~~aL~~L~~~~~-------~~-~~~~--~~~g~i~~Lv~lL~~~~---~~--v~~~a~~aL~~L~ 686 (1890)
+..|.++++.++..|+++|.+++...+ .. +..+ .-...++.|+.++.... +. ....+..++..++
T Consensus 502 ~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv 581 (960)
T 1wa5_C 502 ATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVL 581 (960)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHH
T ss_pred HHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHH
Confidence 999988899999999999999987311 10 1101 11224555555665531 11 1233444444443
Q ss_pred ccCchhhHHHHHhCCChHHHHHHh----CC-CCHHHHHHHHHHHHHHhc--CchHHHHHHhcCcHHHHHHHHhcCCcchH
Q 000184 687 LSVRENREVAAVARDALSPLVVLA----GS-PVLEVAEQATCALANLIL--DSEVSEKAIAEEIILPATRVLCEGTISGK 759 (1890)
Q Consensus 687 ~~~~~~~~~~~~~~~~v~~Lv~ll----~~-~~~ev~~~aa~aL~nL~~--~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 759 (1890)
...++.... .-...++.|...+ ++ .+...+.....++..++. +++. ...+...+.+.+...++....+..
T Consensus 582 ~~~~~~~~p--~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~-~~~~~~~~~p~~~~iL~~~~~~~~ 658 (960)
T 1wa5_C 582 QTSEDSIQP--LFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQN-LPLLVDSMMPTFLTVFSEDIQEFI 658 (960)
T ss_dssp HHHTTTTGG--GHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGG-HHHHHHHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHhhhh--HHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHHHHHhhhHhhH
Confidence 211111000 0011233343333 22 356677778888888874 3333 333456778888888887766666
Q ss_pred HHHHHHHHHHhhc
Q 000184 760 TLAAAAIARLLHS 772 (1890)
Q Consensus 760 ~~aa~aL~~L~~~ 772 (1890)
..+...+..+...
T Consensus 659 ~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 659 PYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6677776666643
No 86
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00022 Score=81.75 Aligned_cols=192 Identities=9% Similarity=0.088 Sum_probs=137.6
Q ss_pred HHHHhhcCCcHhHHHHHHHHHHH-hccCChhhHHHHHH-cCcHHHHHHHh-ccCChhHHHHHHHHHHHHHhccc-ccCC-
Q 000184 1414 PLVGLLYGRNYMLHEAISRALVK-LGKDRPSCKLEMVK-AGVIESVLDIL-HEAPDFLCSAFAELLRILTNNAG-IAKG- 1488 (1890)
Q Consensus 1414 ~L~~lL~~~~~~vr~~A~~aL~~-l~~~~~~~~~~l~~-~~~i~~L~~lL-~~~~~~v~~~aa~~l~~L~~~~~-~~~~- 1488 (1890)
.+.+.+++.+-..|+.|+.+|.. +..+.+.....-.+ ...++.|.+.+ .+.+..++..+..+++.++..-. ..-.
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 46678889999999999999999 86432221100000 13577888888 67777888889999998886544 2322
Q ss_pred ccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc
Q 000184 1489 PSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE 1568 (1890)
Q Consensus 1489 ~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~ 1568 (1890)
......+++++..+++.. +.|+..+..+|..+.+.-+..... ..-...++.|+..|++.++.+|+.++.+|+.+...
T Consensus 100 ~y~~~llp~ll~~l~dkk--~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKK--PSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 344557889999998766 889988888888886642211110 01335788999999999999999999999999863
Q ss_pred cccc-cch---hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000184 1569 EQLQ-KDP---VTQQVIGPLIRVLGSGIHILQQRAVKALVSIAL 1608 (1890)
Q Consensus 1569 ~~~~-~~l---~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~ 1608 (1890)
..-. ..+ .....++.|.++++++++++|..|..+++.+..
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2110 111 124678999999999999999999999999864
No 87
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.56 E-value=0.0079 Score=72.90 Aligned_cols=339 Identities=13% Similarity=0.039 Sum_probs=194.1
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhh-CCC---ccchhhhhc-CcHHHHHH-HhcCCCHHHHHHHHHHHHHhhccCch
Q 000184 371 EQTLVNQFKPRLPFLVQERTIEALASLY-GNP---LLSIKLENS-EAKRLLVG-LITMATNEVQEELVRALLKLCNNEGS 444 (1890)
Q Consensus 371 ~~~L~~ll~~~~~~~~~~~a~~aL~~L~-~~~---~~~~~l~~~-g~i~~Lv~-lL~~~~~~v~~~a~~aL~~L~~~~~~ 444 (1890)
...+++++.......+.+..+.-+..+. .+| .....+... .....+.. .+..+++-.+..+..++..++.....
T Consensus 79 ~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~ 158 (480)
T 1ho8_A 79 LIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH 158 (480)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc
Confidence 3557777776666666778888777774 344 211222221 22222322 33445555666777666666543322
Q ss_pred hhHHHHhcCcHH--HHHHhhCC-CCHHHHHHHHHHHHHcccCChhcHHHHHhcCC--cHHHHHhccC-------------
Q 000184 445 LWRALQGREGIQ--LLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGG--IPPLVQILES------------- 506 (1890)
Q Consensus 445 ~~~~i~~~g~i~--~Lv~lL~~-~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~--i~~Lv~lL~~------------- 506 (1890)
..+.+. ..+. -++..|.. .+.+.+..++.+|..|.. .++.|..+.+.++ +++++..+..
T Consensus 159 ~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~ 235 (480)
T 1ho8_A 159 NVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 235 (480)
T ss_dssp CHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred cHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence 111110 1112 24445554 345667889999999985 7888998886543 6666544331
Q ss_pred --C--CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCH--HHHHHHhhc-CChhHHHHHHHHHHHHhcCCCCCcHHHHHH-
Q 000184 507 --G--SAKAKEDSASILRNLCNHSEDIRACVESADAV--PALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTA- 578 (1890)
Q Consensus 507 --~--~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i--~~Lv~ll~~-~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~- 578 (1890)
+ ..+++.+++-+++-|+.. ++....+...+.. +.|+.+++. ...++.+-+..+|.||....... -..++.
T Consensus 236 ~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~-~~~~~~~ 313 (480)
T 1ho8_A 236 NSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQ-HKKVIKQ 313 (480)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTT-HHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchh-hhhHHHH
Confidence 1 356778999999999984 6666666666644 677777876 45789999999999998754211 011100
Q ss_pred HHhcCCcchHHHHHHHHHHHhhhc-CchHHHHHhhhhcchHHHHHHHhcC----CCHHHHHHHHHHH-HHHhhcChhHHH
Q 000184 579 LLTSDLPESKVYVLDALKSMLSVV-SFSDILREGSAANDAVETMIKILSS----TKEETQAKSASAL-AGIFETRKDLRE 652 (1890)
Q Consensus 579 lL~~~~~~~~~~a~~aL~~L~~~~-~~~~~~~~~~~~~~~i~~Lv~lL~s----~~~~~~~~A~~aL-~~L~~~~~~~~~ 652 (1890)
++- ..+....+.+|.... +.+++... +..|.+.|.. -+. .-+...... +.|.+++....+
T Consensus 314 ~~~------~~~~l~~l~~L~~rk~~Dedl~ed-------l~~L~e~L~~~~~~lts-fDeY~~El~sG~L~WSP~H~se 379 (480)
T 1ho8_A 314 LLL------LGNALPTVQSLSERKYSDEELRQD-------ISNLKEILENEYQELTS-FDEYVAELDSKLLCWSPPHVDN 379 (480)
T ss_dssp HHH------HHCHHHHHHHHHSSCCSSHHHHHH-------HHHHHHHHHHHHHTCCH-HHHHHHHHHHTCCCCCGGGGCH
T ss_pred HHH------HccchHHHHHHhhCCCCcHHHHHH-------HHHHHHHHHHHHHhccc-HHHHHHHHhcCCcccCCCccch
Confidence 000 001122233333221 22332221 2223332221 111 111222222 234444222222
Q ss_pred HHHHc----------CchHHHHHhhcC----------CCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCC
Q 000184 653 SSIAV----------KTLWSVMKLLDV----------GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS 712 (1890)
Q Consensus 653 ~~~~~----------g~i~~Lv~lL~~----------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~ 712 (1890)
.+-.+ ..+..|+++|.+ .++.+..-||.=++.++++.|.. |..+-+-|+=..+.+||.+
T Consensus 380 ~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g-r~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 380 GFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES-IDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp HHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHSHHHHHHHHTSC
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch-hHHHHHcCcHHHHHHHhcC
Confidence 23222 247889999963 36778888999999999988744 4446677887888899999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 000184 713 PVLEVAEQATCALANLI 729 (1890)
Q Consensus 713 ~~~ev~~~aa~aL~nL~ 729 (1890)
++++||.+|..|+..++
T Consensus 459 ~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 459 SDSRVKYEALKATQAII 475 (480)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998776
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.54 E-value=0.0019 Score=86.47 Aligned_cols=290 Identities=12% Similarity=0.062 Sum_probs=199.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHHHcccCChh---cHHHHHhc
Q 000184 418 GLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDD---SKWAITAA 494 (1890)
Q Consensus 418 ~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~---~~~~i~~~ 494 (1890)
..+...+..-+..++..+.++..+.... .....+.+..|.+.+++.... +.|+.++..|+..... .-..++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~-- 94 (986)
T 2iw3_A 21 QKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV-- 94 (986)
T ss_dssp HHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--
T ss_pred hhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--
Confidence 3344333344456666677665532111 111125678888888876555 8889999988843321 112222
Q ss_pred CCcHHHHHhccCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHhCCCHHHHHHHhhcC-ChhHHHHHHHHHHHHhcCCC---
Q 000184 495 GGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSD--- 569 (1890)
Q Consensus 495 g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~-~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~Aa~aL~~L~~~~~--- 569 (1890)
+.++.++..+.+....+|+.|..++..+... ++..- ...+|.|+..+++. .+..+..|..++..|+....
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~ 169 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV 169 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence 5788888888888889998877777666642 23322 23689999988775 58899999999999987543
Q ss_pred ----CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Q 000184 570 ----TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 645 (1890)
Q Consensus 570 ----~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~ 645 (1890)
+..+|.+...+.+..++++..+..++..++.+..+.++ ..-||.|++.+.++++ ...+...|+.-+.
T Consensus 170 ~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-------~~~~~~~~~~~~~p~~--~~~~~~~l~~~tf 240 (986)
T 2iw3_A 170 ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-------ERFIPSLIQCIADPTE--VPETVHLLGATTF 240 (986)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-------GGGHHHHHHHHHCTTH--HHHHHHHHTTCCC
T ss_pred HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-------hhhHHHHHHHhcChhh--hHHHHHHhhcCee
Confidence 35677777888999999999999999999987666652 3349999999998855 2233444433332
Q ss_pred cChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhC-CCCHHHHHHHHHH
Q 000184 646 TRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-SPVLEVAEQATCA 724 (1890)
Q Consensus 646 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~-~~~~ev~~~aa~a 724 (1890)
-.. .+...-+=.+|.|.+.|...+..+.++++-.+.|||.-..++......-...+|.|-+... ..+||+|+.+..|
T Consensus 241 v~~--v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a 318 (986)
T 2iw3_A 241 VAE--VTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRA 318 (986)
T ss_dssp CSC--CCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHH
T ss_pred Eee--ecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHH
Confidence 211 1112233458888999999999999999999999998877766665555667777776554 4789999999999
Q ss_pred HHHHh
Q 000184 725 LANLI 729 (1890)
Q Consensus 725 L~nL~ 729 (1890)
+..|.
T Consensus 319 ~~~l~ 323 (986)
T 2iw3_A 319 LKTLR 323 (986)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88874
No 89
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.53 E-value=0.77 Score=63.11 Aligned_cols=499 Identities=11% Similarity=0.040 Sum_probs=244.6
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhccc-
Q 000184 19 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR-SGSLAVKIQAATVLGSLCKEN- 96 (1890)
Q Consensus 19 ~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~-~~~~~~~~~aa~~L~~L~~~~- 96 (1890)
.+.+.++++.+.+++ ++.|..|-..|..+-+.+ ++++....+|. +.++.+|..|+.+|.+..+.+
T Consensus 15 v~~Le~av~~ly~p~--~~~r~~A~~~L~~~q~sp-----------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W 81 (1023)
T 4hat_C 15 IALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP-----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKW 81 (1023)
T ss_dssp HHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCT-----------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHcCc-----------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 568889999998864 348888999888877764 44444556664 567899999999999877431
Q ss_pred -----hhhHHHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCC
Q 000184 97 -----ELRVKVLLGGCIPPLLGLLKSS-----SAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKS 166 (1890)
Q Consensus 97 -----~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~ 166 (1890)
+.+. .++...+..+.+.-..+ ..-.+...+.++..+.....++.. ...++.++..++.
T Consensus 82 ~~L~~e~~~-~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W-------p~~l~dL~~~l~~---- 149 (1023)
T 4hat_C 82 KLLPNDHRI-GIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-------PEFIPELIGSSSS---- 149 (1023)
T ss_dssp GGSCHHHHH-HHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-------TTHHHHHHHHTTT----
T ss_pred hcCCHHHHH-HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc-------hHHHHHHHHHhcC----
Confidence 2222 22232334444332211 122333455566666552222221 2345556665543
Q ss_pred CchHHHHHHHHHHHhccC------C---hhHHH----HHHhcCCHHHHHHh----hc-CCCHHHHHHHHHHHHHHhhcCc
Q 000184 167 GNVVDNLLTGALRNLSTS------T---EGFWA----ATVQAGGIDILVKL----LT-LGQSSTQAHVCFLLACMMEEDV 228 (1890)
Q Consensus 167 ~~~v~~~~~~~L~~L~~~------~---~~~~~----~i~~~g~v~~Lv~l----L~-~~~~~v~~~a~~~L~~L~~~~~ 228 (1890)
++......+.+|+.|+.. . ...+. .+.+. ++.++.+ |. ..++++...+..++......-+
T Consensus 150 ~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~--~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~ 227 (1023)
T 4hat_C 150 SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE--FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP 227 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC
Confidence 223334455666665422 0 11111 12222 4444444 43 3567778888888887665433
Q ss_pred hhhhHhhccchHHHHH-HHHcCCCCHhHHHHHHHHHHHhhhcC---H--HHHHHHHh--cCChHHHHHhhcCCC---cc-
Q 000184 229 SVCSRVLAADATKQLL-KLLGSGNEASVRAEAAGALKSLSDHC---K--DARREIAG--SNGIPAMINATIAPS---KE- 296 (1890)
Q Consensus 229 ~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~~Aa~aL~~Ls~~~---~--~~~~~i~~--~g~i~~Lv~ll~~~~---~~- 296 (1890)
...+++...++.++ .++.. ++.+..|+.+|..+.... + +....+.. .+.+..+-..+.... ++
T Consensus 228 --i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~ 302 (1023)
T 4hat_C 228 --YRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKAT 302 (1023)
T ss_dssp --THHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHH
T ss_pred --HHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567788899999 88864 479999999999987622 1 11111111 011111101111000 00
Q ss_pred cc-chhhhHHHHHHHHHHHHHhhCCCchhhhhhhccccCC-CChhhhhh-------------hHhHHHHHHHHhccccc-
Q 000184 297 FM-QGEYAQALQENAMCALANISGGLSNVISSLGQSLESC-SSPAQVAD-------------TLGALASALMIYDSKAE- 360 (1890)
Q Consensus 297 ~~-~~~~~~~l~e~a~~aL~nl~~~~~~~i~~l~~~~~~~-~~~~~~~~-------------~~gal~~ll~~~~~~~~- 360 (1890)
.. ....+.+..++-+..+..+.......+ ..+ ... +... ........+..|-...+
T Consensus 303 ~~~~~~~D~e~~~~l~~l~~~~~e~~~~li-------~~~~~~~-~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~ 374 (1023)
T 4hat_C 303 YANANGNDQSFLQDLAMFLTTYLARNRALL-------ESDESLR-ELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVAD 374 (1023)
T ss_dssp HHHTCTTHHHHHHHHHHHHHHHHHHHGGGG-------TSCGGGH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHH-------hCCcchh-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Confidence 00 011234444444444433322100000 000 000 0000 00111222222221100
Q ss_pred ------CCCCCCh--hhhHHHHHhhcCCCC------C-------------hH-HHHHHH-HHHHHhhCCCccchhhhhcC
Q 000184 361 ------STKPSDP--LIVEQTLVNQFKPRL------P-------------FL-VQERTI-EALASLYGNPLLSIKLENSE 411 (1890)
Q Consensus 361 ------~~~~~~~--~~i~~~L~~ll~~~~------~-------------~~-~~~~a~-~aL~~L~~~~~~~~~l~~~g 411 (1890)
....+.+ ..+.+++++.+.... + +. ..-+.. .+|..++. +....
T Consensus 375 l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~-------l~~~~ 447 (1023)
T 4hat_C 375 LFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-------LNVID 447 (1023)
T ss_dssp HTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHH-------HCHHH
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhc-------cCHHH
Confidence 0011111 123344444333222 0 00 000000 11111110 11112
Q ss_pred cHHHHHHHh----c--CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCC-----CCHHHHHHHHHHHHHc
Q 000184 412 AKRLLVGLI----T--MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-----SSEQQQECSVALLCLL 480 (1890)
Q Consensus 412 ~i~~Lv~lL----~--~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~nL 480 (1890)
.++.++..+ . ..++..++.++.+++.++..-......-.-...++.|+.++.. +...++..++++++..
T Consensus 448 ~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry 527 (1023)
T 4hat_C 448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQY 527 (1023)
T ss_dssp HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHH
Confidence 333333433 3 2589999999999999886543321111112567888888763 2233455677888877
Q ss_pred ccCChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHh------CCCHHHHHHHh----hcCC
Q 000184 481 SNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES------ADAVPALLWLL----KNGS 550 (1890)
Q Consensus 481 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~------~g~i~~Lv~ll----~~~~ 550 (1890)
+.--..+...+ ...+..|++.+.++++.+++.|+++|.+||. +++..+.. ..-++.+++.+ ..-+
T Consensus 528 ~~wl~~~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~ 602 (1023)
T 4hat_C 528 PRFLKAHWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQ 602 (1023)
T ss_dssp HHHHHHCHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSC
T ss_pred HHHHhccHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCC
Confidence 64111112211 1245556666667788999999999999996 46655542 11344444433 3345
Q ss_pred hhHHHHHHHHHHHHhcCCC
Q 000184 551 ANGKEIAAKTLNHLIHKSD 569 (1890)
Q Consensus 551 ~~~~~~Aa~aL~~L~~~~~ 569 (1890)
+........++..+.....
T Consensus 603 ~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 603 PQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 5666777777777776544
No 90
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.50 E-value=0.81 Score=62.77 Aligned_cols=226 Identities=10% Similarity=0.006 Sum_probs=134.5
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcC---CHHHHHHHHHHHHHhhc-
Q 000184 19 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG---SLAVKIQAATVLGSLCK- 94 (1890)
Q Consensus 19 ~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~---~~~~~~~aa~~L~~L~~- 94 (1890)
.++|.++++...+.+++...|.+|...|..+.+.+ +++.....+|.+. ++.+|..++.+|.+..+
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp-----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~ 73 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS-----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVRE 73 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh-----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence 56889999888887778889999999998887764 4555667777654 68999999999998765
Q ss_pred -cch----hhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCc
Q 000184 95 -ENE----LRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGN 168 (1890)
Q Consensus 95 -~~~----~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~ 168 (1890)
.++ .+.. ++...++.+.+.-. .+..-.+...+.+|..+.....++.. ...++.++..++..+. +
T Consensus 74 l~~e~~~~~~~~-lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W-------p~~i~~l~~~~~~~~~-~- 143 (980)
T 3ibv_A 74 WNNESNLLELQM-IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW-------NDFFASLQGVIAASSQ-S- 143 (980)
T ss_dssp CCTTTSHHHHHH-HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC-------TTHHHHHHHHHHHHCC-H-
T ss_pred CChhhhHHHHHH-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC-------chHHHHHHHHhcCCCh-h-
Confidence 122 2222 22222333333100 23345566666777766652112222 2346667777665321 1
Q ss_pred hHHHHHHHHHHHhccC--------Ch-h-H-----HHHHHhc-------CCHHHHHHhhcCCCHHHHHHHHHHHHHHhhc
Q 000184 169 VVDNLLTGALRNLSTS--------TE-G-F-----WAATVQA-------GGIDILVKLLTLGQSSTQAHVCFLLACMMEE 226 (1890)
Q Consensus 169 ~v~~~~~~~L~~L~~~--------~~-~-~-----~~~i~~~-------g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~ 226 (1890)
......+++|..++.+ .+ . . +..+.+. +.+..|.....+.+++++..+..+|......
T Consensus 144 ~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w 223 (980)
T 3ibv_A 144 EFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW 223 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh
Confidence 1222334444433211 00 0 1 1222221 2223333333347888888888888776654
Q ss_pred CchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcC
Q 000184 227 DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 270 (1890)
Q Consensus 227 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~ 270 (1890)
-+ ...+++...++.+.++|.. ++++..|+.+|..+....
T Consensus 224 i~--~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 224 IN--INLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKK 262 (980)
T ss_dssp SC--HHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSC
T ss_pred cC--HHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcC
Confidence 32 3456667788888888865 579999999999987644
No 91
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0012 Score=75.50 Aligned_cols=201 Identities=13% Similarity=0.137 Sum_probs=138.0
Q ss_pred HHHHHhhccCCChhhHHHHHHHHHH-hhcCCCcccccccccCCchhhhhhcc-CCCCHHHHHHHHHHHHHhhcccccc-c
Q 000184 1497 PLFLLLTRSEFGPDGQHSALQVLVN-ILEHPQCRADYSLTSHQAIEPLIPLL-DSPAPAVQQLAAELLSHLLLEEQLQ-K 1573 (1890)
Q Consensus 1497 ~Li~lL~~~~~~~~v~~~al~aL~n-l~~~~~~~~~~~~~~~~~i~~Lv~lL-~s~~~~vq~~A~~aL~~l~~~~~~~-~ 1573 (1890)
.+...+.+++ +..|+.|+..|.. +++...........-...+..|...| ++.+..++..|+.+|+.++. ..+ .
T Consensus 20 ~f~~~l~s~~--w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~ 95 (249)
T 2qk1_A 20 DFQERITSSK--WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTP 95 (249)
T ss_dssp THHHHHTCSS--HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTT
T ss_pred hHHHHhhcCC--HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hcccc
Confidence 3456677777 8889999999999 87542111100001235588888889 79999999999999999994 333 3
Q ss_pred chh-c--cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccCh-hHHH--hhcChHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 000184 1574 DPV-T--QQVIGPLIRVLGSGIHILQQRAVKALVSIALTWP-NEIA--KEGGVTELSKIILQADPSLPHALWESAASVLS 1647 (1890)
Q Consensus 1574 ~l~-~--~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~-~~l~--~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~ 1647 (1890)
.+. . ...+++++..+++..+.|+..+..|+..+...-+ .... -.-.++.|...+.+.++.+ .+.++..+.
T Consensus 96 ~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~v----k~~al~~l~ 171 (249)
T 2qk1_A 96 GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQI----RMECTQLFN 171 (249)
T ss_dssp TSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHH----HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHH----HHHHHHHHH
Confidence 333 2 2357899999999999999999999999876431 1110 0123456666666655544 444555555
Q ss_pred hhhhhch----h--hhc-ccchHHHHHhhccCChhHHHHHHHHHHHhhcCChhhHHHHHHcccHHHHHHHHcc
Q 000184 1648 SILQFSS----E--FYL-EVPVAVLVRLLRSGSEGTVIGSLNALLVLESDDGTSAEAMAESGAIEALLELLRS 1713 (1890)
Q Consensus 1648 ~~~~~~~----~--~~~-~~~v~~Lv~ll~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Li~lL~~ 1713 (1890)
....... . .+. ..-+|.|.+++.+.+.+||.+|..++..+.. .+.+..+.+.+.-|++
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~--------~vG~~~~~p~l~~Ld~ 236 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK--------IFGMNTFVKTLEHLDN 236 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH--------HHCSGGGHHHHHHSCH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--------HhCHHHHHHHHHHHhH
Confidence 5543332 1 234 6689999999999999999999999999874 3445567888877766
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.21 E-value=1.6 Score=60.82 Aligned_cols=221 Identities=14% Similarity=0.070 Sum_probs=127.8
Q ss_pred hHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhccc
Q 000184 18 TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR-SGSLAVKIQAATVLGSLCKEN 96 (1890)
Q Consensus 18 ~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~-~~~~~~~~~aa~~L~~L~~~~ 96 (1890)
....+.++++.+.+.+ ...|..|-..|..+.+.+ ++++.+..+|. +.++.+|..|+.+|.+..+.+
T Consensus 14 ~~~~l~~~l~~~~~p~--~~~r~~Ae~~L~~~~~~p-----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~ 80 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP-----------DAWQKADQILQFSTNPQSKFIALSILDKLITRK 80 (1049)
T ss_dssp CHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHST-----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh
Confidence 3678889998888764 347888888888776643 45555666664 457799999999999976431
Q ss_pred ------hhhHHHHhcCChHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCC
Q 000184 97 ------ELRVKVLLGGCIPPLLGLLKSS-----SAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK 165 (1890)
Q Consensus 97 ------~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~ 165 (1890)
+.|..+. ...+..+...-..+ +.-++...+.++..+...+.++.. .+.++.|+..++
T Consensus 81 W~~l~~~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-------p~ll~~L~~~~~---- 148 (1049)
T 3m1i_C 81 WKLLPNDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-------PEFIPELIGSSS---- 148 (1049)
T ss_dssp GGGSCHHHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-------TTHHHHHHHHHT----
T ss_pred CccCCHHHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-------hHHHHHHHHHHc----
Confidence 2232222 21222222221111 245566677777777663222222 245677777764
Q ss_pred CCchHHHHHHHHHHHhccCCh--------hHH-----HHHHhcCCHHHH----HHhhcC-CCHHHHHHHHHHHHHHhhcC
Q 000184 166 SGNVVDNLLTGALRNLSTSTE--------GFW-----AATVQAGGIDIL----VKLLTL-GQSSTQAHVCFLLACMMEED 227 (1890)
Q Consensus 166 ~~~~v~~~~~~~L~~L~~~~~--------~~~-----~~i~~~g~v~~L----v~lL~~-~~~~v~~~a~~~L~~L~~~~ 227 (1890)
.++.....+..+|..++..-. ..+ ..+.+. ++.+ ..++.. ++.+++..++.++.......
T Consensus 149 ~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~--~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi 226 (1049)
T 3m1i_C 149 SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKE--FEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI 226 (1049)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS
T ss_pred cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Confidence 233344456667777762110 111 112221 3333 334433 46778888999887655433
Q ss_pred chhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhc
Q 000184 228 VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDH 269 (1890)
Q Consensus 228 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~ 269 (1890)
+ ...+.+...++.+.+.+.. +.+++..|+.+|..+...
T Consensus 227 ~--~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 227 P--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp C--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHC
T ss_pred C--HHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhC
Confidence 3 2234556666766633222 467999999999988764
No 93
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.14 E-value=1.4 Score=60.68 Aligned_cols=225 Identities=15% Similarity=0.077 Sum_probs=125.6
Q ss_pred hHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCC-Ccccc
Q 000184 67 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAK-DYVGS 144 (1890)
Q Consensus 67 v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~ls~~~~~-~~~~~ 144 (1890)
+..++..+-+++++.|..|-..|..+-+.+ ++++.+..+|. +.++.+|..|+..|.+.-...-+ -....
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~ 88 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDH 88 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 444555555666667888888888775443 34555566664 46789999999988875441000 00111
Q ss_pred chhhhcCChHHHHHHHhccC--CCCchHHHHHHHHHHHhccCC-hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHH
Q 000184 145 KIFSTEGVVPVLWEQLKNGL--KSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 221 (1890)
Q Consensus 145 ~~~~~~g~ip~L~~ll~~~~--~~~~~v~~~~~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 221 (1890)
+..++..++..+........ ...+.+....+.++..++... +..|. +.++.++.+++++ +........+|.
T Consensus 89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp-----~~l~dL~~~l~~~-~~~~~~~L~iL~ 162 (1023)
T 4hat_C 89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSSS-VNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHTTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch-----HHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 22344444444433321110 012345555666666655321 23444 4578888888654 455666777776
Q ss_pred HHhhc---C--c---hh-hhHh----hc--cchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHH
Q 000184 222 CMMEE---D--V---SV-CSRV----LA--ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAM 286 (1890)
Q Consensus 222 ~L~~~---~--~---~~-~~~i----~~--~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~L 286 (1890)
.+... . + .. +..+ .. ...+..+.+++.+..+.++...+..++.....--+ -..+.+.+-++.+
T Consensus 163 ~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l 240 (1023)
T 4hat_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILELL 240 (1023)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHHH
Confidence 66532 0 1 01 1111 11 12233444556554455677778888877554111 3445667777777
Q ss_pred H-HhhcCCCccccchhhhHHHHHHHHHHHHHhhC
Q 000184 287 I-NATIAPSKEFMQGEYAQALQENAMCALANISG 319 (1890)
Q Consensus 287 v-~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~ 319 (1890)
+ ..+.. +.+++.|+.+|..+..
T Consensus 241 ~~~~L~~-----------~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 241 STKFMTS-----------PDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HTHHHHS-----------HHHHHHHHHHHHHHHT
T ss_pred HHHHcCC-----------HHHHHHHHHHHHHHHc
Confidence 7 76643 5689999999999875
No 94
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.82 E-value=0.087 Score=70.64 Aligned_cols=278 Identities=13% Similarity=0.101 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc---hhhHHHHhcCcHHHHHHhhC
Q 000184 387 QERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG---SLWRALQGREGIQLLISLLG 463 (1890)
Q Consensus 387 ~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~---~~~~~i~~~g~i~~Lv~lL~ 463 (1890)
+..++..++++..+...-..+. .+.+..+.+.+...... +.|+.++..+|.... .....+. +.++.+++.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~ 105 (986)
T 2iw3_A 31 RHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAG 105 (986)
T ss_dssp HHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhc
Confidence 5677888888755432212222 35667777777654333 999999999995421 1222233 56899999999
Q ss_pred CCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC-CHHHHHHHHHHHHHHhcCChHHHHHHHh--CCCHH
Q 000184 464 LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVES--ADAVP 540 (1890)
Q Consensus 464 ~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~e~a~~aL~~L~~~~~~~r~~i~~--~g~i~ 540 (1890)
+....++..|..++..+....+.... ...+|.|+..|.+. .=+.+..|+.++..|+...+ ..+.. ...||
T Consensus 106 dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p 178 (986)
T 2iw3_A 106 NKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK---DQVALRMPELIP 178 (986)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---HHHHHhccchhc
Confidence 99999999887776666542222211 23688899888765 46788899999999996432 22222 45788
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhcCCCC----CcHHHHHHHHhcCCcchHHHHHHHHHHHhh---hcCchHHHHHhhh
Q 000184 541 ALLWLLKNGSANGKEIAAKTLNHLIHKSDT----ATISQLTALLTSDLPESKVYVLDALKSMLS---VVSFSDILREGSA 613 (1890)
Q Consensus 541 ~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~----~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~---~~~~~~~~~~~~~ 613 (1890)
.+-+.+-+..++++..|..++..+|..-++ ..+|.|+.-+.++. + +-+|+..|+. +.....-.=..
T Consensus 179 ~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~-~----~~~~~~~l~~~tfv~~v~~~~l~~-- 251 (986)
T 2iw3_A 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPT-E----VPETVHLLGATTFVAEVTPATLSI-- 251 (986)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTT-H----HHHHHHHHTTCCCCSCCCHHHHHH--
T ss_pred chHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChh-h----hHHHHHHhhcCeeEeeecchhHHH--
Confidence 888888888999999999999999975544 45666666666542 2 3444444444 22222211111
Q ss_pred hcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHH-HHHHcCchHHHHHhh-cCCCHHHHHHHHHHHHHHH
Q 000184 614 ANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRE-SSIAVKTLWSVMKLL-DVGSECILVEASRCLAAIF 686 (1890)
Q Consensus 614 ~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~-~~~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~ 686 (1890)
-+|.|..-|+..+..+++.++-++-|+|+--++-++ ...-...+|.|.+.. .-.+|+++.-+.+++..|-
T Consensus 252 ---~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 252 ---MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp ---HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 267788888888999999999999999987544332 233455566666655 4577888877777777763
No 95
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.81 E-value=0.0015 Score=73.67 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=95.1
Q ss_pred HHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhccCCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCC
Q 000184 1362 RSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDR 1441 (1890)
Q Consensus 1362 ~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~ 1441 (1890)
|......-....|..++.++++.+|..++..| ..+.|..++++++..||..+...+ . .
T Consensus 67 R~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L-----------------~~~~L~~ll~D~d~~VR~~aA~~l---~--~ 124 (244)
T 1lrv_A 67 RAIAVRYSPVEALTPLIRDSDEVVRRAVAYRL-----------------PREQLSALMFDEDREVRITVADRL---P--L 124 (244)
T ss_dssp HHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTS-----------------CSGGGGGTTTCSCHHHHHHHHHHS---C--T
T ss_pred HHHHHHhCCHHHHHHHccCcCHHHHHHHHHHC-----------------CHHHHHHHHcCCCHHHHHHHHHhC---C--H
Confidence 33333333344556666777777777776542 124677788888889988887743 1 1
Q ss_pred hhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHH
Q 000184 1442 PSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVN 1521 (1890)
Q Consensus 1442 ~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~n 1521 (1890)
+.|..++.+++..|+..++..+ ..+.+..++++++ +.||..++..
T Consensus 125 -------------~~L~~L~~D~d~~VR~~aA~~l-----------------~~~~l~~l~~D~d--~~VR~~aa~~--- 169 (244)
T 1lrv_A 125 -------------EQLEQMAADRDYLVRAYVVQRI-----------------PPGRLFRFMRDED--RQVRKLVAKR--- 169 (244)
T ss_dssp -------------GGGGGGTTCSSHHHHHHHHHHS-----------------CGGGGGGTTTCSC--HHHHHHHHHH---
T ss_pred -------------HHHHHHHcCCCHHHHHHHHHhc-----------------CHHHHHHHHcCCC--HHHHHHHHHc---
Confidence 2355566777777777666521 1233445666666 8888776654
Q ss_pred hhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHHHHHHHhcCCCHHHHHHHHH
Q 000184 1522 ILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVK 1601 (1890)
Q Consensus 1522 l~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~ 1601 (1890)
+ ..+.|..+++++++.||..++..+ ..+.|..++++.++.||..++.
T Consensus 170 l----------------~~~ll~~ll~D~d~~VR~aaa~~l-----------------~~~~L~~Ll~D~d~~VR~~aa~ 216 (244)
T 1lrv_A 170 L----------------PEESLGLMTQDPEPEVRRIVASRL-----------------RGDDLLELLHDPDWTVRLAAVE 216 (244)
T ss_dssp S----------------CGGGGGGSTTCSSHHHHHHHHHHC-----------------CGGGGGGGGGCSSHHHHHHHHH
T ss_pred C----------------CHHHHHHHHcCCCHHHHHHHHHhC-----------------CHHHHHHHHcCCCHHHHHHHHH
Confidence 1 124555677788888888777642 1245666677777777777777
Q ss_pred HHH
Q 000184 1602 ALV 1604 (1890)
Q Consensus 1602 aL~ 1604 (1890)
.+.
T Consensus 217 ~l~ 219 (244)
T 1lrv_A 217 HAS 219 (244)
T ss_dssp HSC
T ss_pred cCC
Confidence 776
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.68 E-value=1.4 Score=61.55 Aligned_cols=521 Identities=9% Similarity=0.028 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhc-CCCHHHHHHHHHHHHHHhhcC-----chhhhHhhccchHHHH
Q 000184 170 VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLT-LGQSSTQAHVCFLLACMMEED-----VSVCSRVLAADATKQL 243 (1890)
Q Consensus 170 v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~-~~~~~v~~~a~~~L~~L~~~~-----~~~~~~i~~~g~i~~L 243 (1890)
.+..|...|..+-..+ ++...+..+|. +.+..+|..|+.+|.+....+ ++.+..+ . ..+
T Consensus 32 ~r~~Ae~~L~~~~~~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~i-r----~~l 96 (1049)
T 3m1i_C 32 QQKQAQEILTKFQDNP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGI-R----NFV 96 (1049)
T ss_dssp HHHHHHHHHHHHHHST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHH-H----HHH
T ss_pred HHHHHHHHHHHHHhCc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHH-H----HHH
Confidence 4555666666654332 33444555554 467889999999998876322 1111111 1 223
Q ss_pred HHHHcCCC--------CHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCCCccccchhhhHHHHHHHHHHHH
Q 000184 244 LKLLGSGN--------EASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA 315 (1890)
Q Consensus 244 v~lL~~~~--------~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~~~l~e~a~~aL~ 315 (1890)
++.+.+.. +..++...+.++..++...... ...+.++.|+..+.. + ....+.++.+|.
T Consensus 97 l~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~----~Wp~ll~~L~~~~~~-~---------~~~~~~~l~~L~ 162 (1049)
T 3m1i_C 97 VGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSSS-S---------VNVCENNMIVLK 162 (1049)
T ss_dssp HHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHTT-C---------HHHHHHHHHHHH
T ss_pred HHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHcc-C---------hHHHHHHHHHHH
Confidence 33333211 2457788888888877642110 123567778887752 1 334566777776
Q ss_pred HhhCCCchhhhhhhccccCCCChhhhh-hhHhHHHHHHHHhcccccCCCCCChhhhHHHHHhhcCCCCChHHHHHHHHHH
Q 000184 316 NISGGLSNVISSLGQSLESCSSPAQVA-DTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEAL 394 (1890)
Q Consensus 316 nl~~~~~~~i~~l~~~~~~~~~~~~~~-~~~gal~~ll~~~~~~~~~~~~~~~~~i~~~L~~ll~~~~~~~~~~~a~~aL 394 (1890)
.++.... .. ........-. +....+.. . -..+.+.+...++......++..++.++
T Consensus 163 ~l~eev~-------~~-~~~~~~~~r~~~lk~~l~~---~------------~~~i~~~~~~~l~~~~~~~~~~~aL~~l 219 (1049)
T 3m1i_C 163 LLSEEVF-------DF-SAEQMTQAKALHLKNSMSK---E------------FEQIFKLCFQVLEQGSSSSLIVATLESL 219 (1049)
T ss_dssp HHHHHHH-------TS-CTTTSCHHHHHHHHHHHHH---H------------HHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHH-------Hh-cchhhhhHHHHHHHHHHHH---H------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6653100 00 0000000000 00000000 0 0123334444444333444688888888
Q ss_pred HHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchh-----hHHHHh--cCcHHHHHH-hh----
Q 000184 395 ASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSL-----WRALQG--REGIQLLIS-LL---- 462 (1890)
Q Consensus 395 ~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~-----~~~i~~--~g~i~~Lv~-lL---- 462 (1890)
.+...--.. ..+.+...++.+...+. .+++++..|+.+|..+....... ...+.. .+.+..+.. ++
T Consensus 220 ~~~l~wi~~-~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~ 297 (1049)
T 3m1i_C 220 LRYLHWIPY-RYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTA 297 (1049)
T ss_dssp HHHTTTSCT-HHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHhhCCH-HHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 776432221 12333455666553222 37899999999999887652111 111100 112222211 11
Q ss_pred ---------CCCCHHHHHHHHHHHHHcccC-------ChhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 000184 463 ---------GLSSEQQQECSVALLCLLSNE-------NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHS 526 (1890)
Q Consensus 463 ---------~~~~~~v~~~A~~aL~nL~~~-------~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~ 526 (1890)
.+.+.+.....+..+..+... .++.+..+ ...++.++.....++.++...+......++..-
T Consensus 298 ~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l 375 (1049)
T 3m1i_C 298 DLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADL 375 (1049)
T ss_dssp CHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 122333334444444443311 11111111 124555555555667777777777776666510
Q ss_pred ---hHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCcHH--HHHHHHhcCCcc-----hHHHHHHHHH
Q 000184 527 ---EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATIS--QLTALLTSDLPE-----SKVYVLDALK 596 (1890)
Q Consensus 527 ---~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~--~L~~lL~~~~~~-----~~~~a~~aL~ 596 (1890)
+..+..+ ...++.|+.. ++.++....+..... . .+..+....+ ....+..+|.
T Consensus 376 ~~~~~~~~~~--~~~l~~Lv~~--------------ll~~m~~~ed~~~~~dd~-~e~~r~~~~d~d~~~~~~~~~~~L~ 438 (1049)
T 3m1i_C 376 FYEPLKKHIY--EEICSQLRLV--------------IIENMVRPEEVLVVENDE-GEIVREFVKESDTIQLYKSEREVLV 438 (1049)
T ss_dssp HHSTTCGGGG--HHHHHHHHHH--------------HHHTCCCCTTCCEEECTT-SCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HhchhHHHHH--HHHHHHHHHH--------------HHHhcCCCcceeeeeCCC-CcchHhhhccchHHHHHHHHHHHHH
Confidence 0000000 0112222211 222332211100000 0 0000001111 1223455565
Q ss_pred HHhhhcCchHHHHHhhhhcchHHHHHHHhc--CCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcC-----
Q 000184 597 SMLSVVSFSDILREGSAANDAVETMIKILS--STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV----- 669 (1890)
Q Consensus 597 ~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~--s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~----- 669 (1890)
.++.+... +.+. . ..+.+-..+. +.+...++.++++++.++.......+.......++.|..+...
T Consensus 439 ~l~~~~~~-~~l~-~-----v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~ 511 (1049)
T 3m1i_C 439 YLTHLNVI-DTEE-I-----MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD 511 (1049)
T ss_dssp HHHHHCHH-HHHH-H-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH
T ss_pred HHHccCHH-HHHH-H-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 55543321 1111 1 1344444554 3577889999999999986532221111122344444443321
Q ss_pred CCHHHHHHHHHHHHHHHccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHH--------HHhc
Q 000184 670 GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEK--------AIAE 741 (1890)
Q Consensus 670 ~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~--------~~~~ 741 (1890)
+.+.++..++.+++.++.-.. .+.. .. ...++.++..+.++++.|+..|++++.+++.+...... ..-.
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~-~~~~-~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~ 588 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLK-AHWN-FL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ 588 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH-HCHH-HH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH-hHHH-HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 223344457788887753211 1111 11 33577778888888999999999999999853222110 1123
Q ss_pred CcHHHHHHHHhcCCcchHHHHHHHHHHHhhcC
Q 000184 742 EIILPATRVLCEGTISGKTLAAAAIARLLHSR 773 (1890)
Q Consensus 742 ~~v~~L~~ll~~~~~~~~~~aa~aL~~L~~~~ 773 (1890)
.++..+..++..-+.+.......++..+....
T Consensus 589 ~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 45555556666544444455556666665443
No 97
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.53 E-value=0.0017 Score=73.20 Aligned_cols=165 Identities=15% Similarity=0.114 Sum_probs=90.8
Q ss_pred HHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCcccc
Q 000184 1413 IPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAA 1492 (1890)
Q Consensus 1413 ~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~ 1492 (1890)
..|..++++++..||..++..| . .+.|..++.+++..|+..++..+ .
T Consensus 77 ~~l~~L~~D~~~~VR~~aA~~L---~---------------~~~L~~ll~D~d~~VR~~aA~~l------~--------- 123 (244)
T 1lrv_A 77 EALTPLIRDSDEVVRRAVAYRL---P---------------REQLSALMFDEDREVRITVADRL------P--------- 123 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHHHHHHS------C---------
T ss_pred HHHHHHccCcCHHHHHHHHHHC---C---------------HHHHHHHHcCCCHHHHHHHHHhC------C---------
Confidence 3455566666666666666432 1 13455566666666666655422 0
Q ss_pred CChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccc
Q 000184 1493 KVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQ 1572 (1890)
Q Consensus 1493 ~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~ 1572 (1890)
.+.|..++++++ +.||..++.. + ..+.+..+++++++.||..++..+.
T Consensus 124 --~~~L~~L~~D~d--~~VR~~aA~~---l----------------~~~~l~~l~~D~d~~VR~~aa~~l~--------- 171 (244)
T 1lrv_A 124 --LEQLEQMAADRD--YLVRAYVVQR---I----------------PPGRLFRFMRDEDRQVRKLVAKRLP--------- 171 (244)
T ss_dssp --TGGGGGGTTCSS--HHHHHHHHHH---S----------------CGGGGGGTTTCSCHHHHHHHHHHSC---------
T ss_pred --HHHHHHHHcCCC--HHHHHHHHHh---c----------------CHHHHHHHHcCCCHHHHHHHHHcCC---------
Confidence 123444556555 6677665542 1 0134456666777777777766411
Q ss_pred cchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhccChhHHHhhcChHHHHHHHhhcCCCCcHHHHHHHHHHHHhhhhh
Q 000184 1573 KDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVTELSKIILQADPSLPHALWESAASVLSSILQF 1652 (1890)
Q Consensus 1573 ~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~~~~~~l~~~g~I~~Ll~~l~~~~~~~~~~~~~~a~~~l~~~~~~ 1652 (1890)
-+.|..++++.+++||..++..+ + .+.|..++.+.++.||..+++ . +
T Consensus 172 --------~~ll~~ll~D~d~~VR~aaa~~l---~------------~~~L~~Ll~D~d~~VR~~aa~-~---l------ 218 (244)
T 1lrv_A 172 --------EESLGLMTQDPEPEVRRIVASRL---R------------GDDLLELLHDPDWTVRLAAVE-H---A------ 218 (244)
T ss_dssp --------GGGGGGSTTCSSHHHHHHHHHHC---C------------GGGGGGGGGCSSHHHHHHHHH-H---S------
T ss_pred --------HHHHHHHHcCCCHHHHHHHHHhC---C------------HHHHHHHHcCCCHHHHHHHHH-c---C------
Confidence 13344566777777777777652 1 234555566666555544444 1 0
Q ss_pred chhhhcccchHHHHHhhccCChhHHHHHHHHH
Q 000184 1653 SSEFYLEVPVAVLVRLLRSGSEGTVIGSLNAL 1684 (1890)
Q Consensus 1653 ~~~~~~~~~v~~Lv~ll~~~~~~v~~~a~~aL 1684 (1890)
+.+.|..| ++.++.||.+++..|
T Consensus 219 --------~~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 219 --------SLEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --------CHHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --------CHHHHHHc-cCCCHHHHHHHHHHh
Confidence 23455555 777788887776544
No 98
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.48 E-value=0.11 Score=60.01 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=131.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHHH
Q 000184 618 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 697 (1890)
Q Consensus 618 i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~ 697 (1890)
+..+++-|.+++.+.++.+..-|..+.....+....++..+++..|++.....+.+++..++.++.++..+.. .....+
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~-Gm~gvv 198 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD-GMLGVV 198 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH-HHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc-cccchh
Confidence 4456677778888889999999999666668888899999999999999999999999999999999976642 222223
Q ss_pred HhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc-hHHHHHHh----------cCcHHHHHHHHh---cCCcchHHHHH
Q 000184 698 VARDALSPLVVLAGSPVLEVAEQATCALANLILDS-EVSEKAIA----------EEIILPATRVLC---EGTISGKTLAA 763 (1890)
Q Consensus 698 ~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~-~~~~~~~~----------~~~v~~L~~ll~---~~~~~~~~~aa 763 (1890)
-....+..+..++.+....|...|...|..++... ....-+.. ..-...|+++++ ..+.+++.+|.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 35668889999999888999999999999987433 23322221 123778999998 56667899988
Q ss_pred HHHHHHhhcCccc---hhHhhhhhhhccHHHHHHHhhcc
Q 000184 764 AAIARLLHSRKID---YTITDCVNRAGTVLALVSFLESA 799 (1890)
Q Consensus 764 ~aL~~L~~~~~~~---~~~~~~~~~~g~l~~li~~l~~~ 799 (1890)
.-+..++...+.. +.+.+...+.|.=..+.+.++..
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 8888888765542 24444433444333444445543
No 99
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.47 E-value=0.046 Score=63.09 Aligned_cols=138 Identities=17% Similarity=0.129 Sum_probs=109.6
Q ss_pred HHHHHHHHHHH-hhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHH-hcCcHHHHHHhhC
Q 000184 386 VQERTIEALAS-LYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ-GREGIQLLISLLG 463 (1890)
Q Consensus 386 ~~~~a~~aL~~-L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~ 463 (1890)
.+++++..|.. +..+.+....+...+|+..|+.+....+...+..++++|.++.... .-...++ ....|..+..++.
T Consensus 134 ~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~~~fI~~lyslv~ 212 (339)
T 3dad_A 134 ELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAHSDTIQWLYTLCA 212 (339)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCCHHHHHHHHHHHc
Confidence 37888999998 4678889999999999999999999999999999999999998753 3333444 4457899999999
Q ss_pred CCCHHHHHHHHHHHHHcccCChhcHHHHHh-------cC---CcHHHHHhcc---CCCHHHHHHHHHHHHHHhc
Q 000184 464 LSSEQQQECSVALLCLLSNENDDSKWAITA-------AG---GIPPLVQILE---SGSAKAKEDSASILRNLCN 524 (1890)
Q Consensus 464 ~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~-------~g---~i~~Lv~lL~---~~~~~~~e~a~~aL~~L~~ 524 (1890)
+.+..+...|...|..++...+.+...+.+ .. -.+.|+.+|. +++.+++.+|...+-.+..
T Consensus 213 s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~ 286 (339)
T 3dad_A 213 SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLA 286 (339)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999998655444433322 11 3779999997 6789999998887776665
No 100
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.77 E-value=1.7 Score=59.62 Aligned_cols=454 Identities=11% Similarity=0.037 Sum_probs=222.4
Q ss_pred CCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCC---CHHHHHHHHHHHHHcccCChhc----HHHHHhcC
Q 000184 423 ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS---SEQQQECSVALLCLLSNENDDS----KWAITAAG 495 (1890)
Q Consensus 423 ~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~A~~aL~nL~~~~~~~----~~~i~~~g 495 (1890)
.++..|..|-..|..+-.. + +++.....+|..+ +..+|..|+.+|.+....-++. ...-.+..
T Consensus 20 sd~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ 89 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS 89 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 3788898888888776554 2 5666777778654 6899999999888765422222 22222223
Q ss_pred CcHHHHHhcc-CCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCCh-hHHHHHHHHHHHHhcC---CC-
Q 000184 496 GIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLNHLIHK---SD- 569 (1890)
Q Consensus 496 ~i~~Lv~lL~-~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~-~~~~~Aa~aL~~L~~~---~~- 569 (1890)
.+..+.+.-. .+..-++.+.+.+|..+....-..+| .+.++.|+.++.++++ .......++|..+... ..
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 4444444111 23567888888888888753100000 2344555555554332 2222233333322211 00
Q ss_pred ----------------------CCcHHHHHHHHhc----CCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHH
Q 000184 570 ----------------------TATISQLTALLTS----DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK 623 (1890)
Q Consensus 570 ----------------------~~~i~~L~~lL~~----~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~ 623 (1890)
+...+....+|.. .++++...+.+|++....-.+.. .+.+.+-++.+..
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~-----~i~~~~ll~~l~~ 240 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININ-----LIVNEPCMNLLYS 240 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHH-----HHHCHHHHHHHHH
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHH-----hhhcchHHHHHHH
Confidence 0012223333332 45556666677766655422222 2233456777888
Q ss_pred HhcCCCHHHHHHHHHHHHHHhhcChh--HHHHHHHcCchHHHHHhhc--CCCHHHHHHHHHHHHHHHc------cCch--
Q 000184 624 ILSSTKEETQAKSASALAGIFETRKD--LRESSIAVKTLWSVMKLLD--VGSECILVEASRCLAAIFL------SVRE-- 691 (1890)
Q Consensus 624 lL~s~~~~~~~~A~~aL~~L~~~~~~--~~~~~~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~------~~~~-- 691 (1890)
++.+ ++++..|+.+|..+.....+ ....++..=.+...+..+. .++.+..+..++.+..++. ..++
T Consensus 241 ~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~ 318 (980)
T 3ibv_A 241 FLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL 318 (980)
T ss_dssp HTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred HcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 8764 89999999999999876432 1111221111222222222 5677766655555544321 1110
Q ss_pred --h--hHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcC-----c----hHHHHHHhcCcHHHHHHHHhcCCcc-
Q 000184 692 --N--REVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD-----S----EVSEKAIAEEIILPATRVLCEGTIS- 757 (1890)
Q Consensus 692 --~--~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~-----~----~~~~~~~~~~~v~~L~~ll~~~~~~- 757 (1890)
. .+..-.-.+.++.++.++.++++++-..+..-+..++.. . ......+-...++.+++-++++++.
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~ 398 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 398 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence 0 011111246788888999999998887766665554421 0 0111122344555555555554321
Q ss_pred ---------------hHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHH-Hhh---ccCcccchHHHHHHHHHHHhc
Q 000184 758 ---------------GKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVS-FLE---SASGSVATSEALDALAILSRS 818 (1890)
Q Consensus 758 ---------------~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~-~l~---~~~~~v~~~~al~~L~~l~~~ 818 (1890)
.|+... .|............+ .+ . ...+.+++. .+. +.+=... +-++-+|..+.+.
T Consensus 399 ~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l-~~-~-~~~i~~~l~~~l~~~~~~~W~~~-EaaL~~l~~iaE~ 473 (980)
T 3ibv_A 399 WDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFS-SY-M-YSAITSSLSTAATLSPENSWQLI-EFALYETYIFGEG 473 (980)
T ss_dssp CCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHH-HH-H-HHHHHHHHHHHTTSCHHHHHHHH-HHHHHHHHHTTTT
T ss_pred cccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHH-HH-H-HHHHHHHHHHHhcccCCCCHHHH-HHHHHHHHHHHhh
Confidence 222222 222222110000000 00 0 002222221 121 1111122 5556666655432
Q ss_pred CCCCCCCCCccceeecCCCChhhHHhHhh-----cCChhHHHHHHHHHHHHhcCCccchhhhhccCccchHHHHHHHhh-
Q 000184 819 GGASGHVKPAWQVLAEFPKSITPIVSSIA-----DATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVIS- 892 (1890)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~-----~~~~~~~~~a~~~L~~l~~~~~~~~g~~i~~~~~~~~~~~~~~l~- 892 (1890)
-.+.....+ ...-..|..++-+.+.+. ..+|.++..+.+++.||.. -|.........+++-++.
T Consensus 474 i~~~~~~~~--~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~--------~~~~~~~~l~~~L~~ll~~ 543 (980)
T 3ibv_A 474 LRGPDAFFN--EVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYAS--------FFDYESAAIPALIEYFVGP 543 (980)
T ss_dssp CCSGGGTBC--SSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGG--------GGGTCCTTHHHHHHHHTST
T ss_pred ccccccccC--cccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH--------HHhcCchhHHHHHHHHhcc
Confidence 211000000 000112334444444444 5779999999999999944 334444555566666555
Q ss_pred ----cCCCceeecchhHHHHHhhh
Q 000184 893 ----CTNPKVKIGGAALLICAAKV 912 (1890)
Q Consensus 893 ----s~~~~~r~~~~~~~~~~a~~ 912 (1890)
++++.+|..|++++--+.+.
T Consensus 544 ~gl~~~~~~V~~~a~~af~~f~~~ 567 (980)
T 3ibv_A 544 RGIHNTNERVRPRAWYLFYRFVKS 567 (980)
T ss_dssp TTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred ccccCCChhHHHHHHHHHHHHHHH
Confidence 45667887777776665443
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=94.93 E-value=0.45 Score=57.69 Aligned_cols=255 Identities=17% Similarity=0.156 Sum_probs=139.2
Q ss_pred ChHHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHH
Q 000184 1284 AVQPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRS 1363 (1890)
Q Consensus 1284 ~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~ 1363 (1890)
-...|+.-|-++.-+.||-|+.+|.++....... +|-. ...+ . ..+.++|+.++-+.-+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G--------AGR~--------~~~N-~--DLAvRLLCVLALDRFG-- 233 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG--------GDIQ--------IRVD-S--KLFSKIYEILVTDKFN-- 233 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC------------CC--------CCCC-T--THHHHHHHHHHHBCCB--
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC--------Ccee--------cccc-H--HHHHHHHHHHHhcccc--
Confidence 3566777777788999999999999998632110 1111 1111 1 4455555554322110
Q ss_pred HHHhhCchHHHHHHHc-cCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCC
Q 000184 1364 TVAAARCVEPLVSLLV-TEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDR 1441 (1890)
Q Consensus 1364 ~~~~~~~i~~Lv~lL~-~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~ 1441 (1890)
+. .. ..-.++|+.|+.+|+.+. -+++ ..++..|+..+..+.=++|..+.-.|.-+ .+
T Consensus 234 ---DY---------VSDqVVAPVRETaAQtLGaL~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~D- 292 (800)
T 3oc3_A 234 ---DF---------VDDRTVAPVRDAAAYLLSRIYPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KE- 292 (800)
T ss_dssp ---BC---------SSSSCBCHHHHHHHHHHHHHTTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GG-
T ss_pred ---cc---------ccCeeeeehHHHHHHHHHHHHhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HH-
Confidence 00 00 112345666666665553 1111 22233333344555556666666666555 11
Q ss_pred hhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHH
Q 000184 1442 PSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVN 1521 (1890)
Q Consensus 1442 ~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~n 1521 (1890)
-.. . -.++++.++.-|.+.+|+|+..||+++...+ ....-...+..|...|.+.|.-...-.+.+..|..
T Consensus 293 -LL~-~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAk 362 (800)
T 3oc3_A 293 -FVE-D--KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTK 362 (800)
T ss_dssp -GCC-C--HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHH
T ss_pred -HHH-H--HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHH
Confidence 000 0 1235566666667777777777776664443 00111223445555555443222233345566677
Q ss_pred hhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhhcccccccchhccCcHH-HHHHHhcCCCHHHHHHHH
Q 000184 1522 ILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLEEQLQKDPVTQQVIG-PLIRVLGSGIHILQQRAV 1600 (1890)
Q Consensus 1522 l~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~~~~~~~l~~~~~i~-~Lv~lL~s~~~~v~~~A~ 1600 (1890)
|...+.... ..+..||.|+.+|.+.-+.||.+++++|..+.. ..++. ...++|-..+++++..+.
T Consensus 363 L~s~p~~a~----~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~----------~~~LRLIFQNILLE~neeIl~lS~ 428 (800)
T 3oc3_A 363 IYRENPELS----IPPERLKDIFPCFTSPVPEVRTSILNMVKNLSE----------ESIDFLVAEVVLIEEKDEIREMAI 428 (800)
T ss_dssp HHHHCTTCC----CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCC----------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHcCCcccc----cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHhCCcHHHHHHHH
Confidence 766654211 345889999999999999999999999987762 11222 223345567888888888
Q ss_pred HHHH
Q 000184 1601 KALV 1604 (1890)
Q Consensus 1601 ~aL~ 1604 (1890)
.+..
T Consensus 429 ~VWk 432 (800)
T 3oc3_A 429 KLLK 432 (800)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7774
No 102
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.94 E-value=1.5 Score=49.50 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=80.4
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHHH
Q 000184 617 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVA 696 (1890)
Q Consensus 617 ~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~~ 696 (1890)
.+|.|++-+.++.+.+|..+-.++..++.-.+. ....+.++..+.+.+..++..++..+.++..... ..
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G-~~--- 201 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAG-IS--- 201 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC-SG---
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC-CC---
Confidence 489999999999999999998888877753222 2467788888999999999999999999854321 11
Q ss_pred HHhCCCh---HHHHHHhCCCCHHHHHHHHHHHHHHh
Q 000184 697 AVARDAL---SPLVVLAGSPVLEVAEQATCALANLI 729 (1890)
Q Consensus 697 ~~~~~~v---~~Lv~ll~~~~~ev~~~aa~aL~nL~ 729 (1890)
...++ +.+.+++.+++.+||..|..++..+.
T Consensus 202 --~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 202 --PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp --GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred --ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34578 99999999999999999999998664
No 103
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=93.55 E-value=0.2 Score=60.71 Aligned_cols=236 Identities=17% Similarity=0.124 Sum_probs=156.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHc--C-chHHHHHhh--c----CCC---HHHHHHHHHHHHHH
Q 000184 618 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV--K-TLWSVMKLL--D----VGS---ECILVEASRCLAAI 685 (1890)
Q Consensus 618 i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~--g-~i~~Lv~lL--~----~~~---~~v~~~a~~aL~~L 685 (1890)
...|+.-|.++.-++|.-|+.+|..+.+....-....... . ++..++-+. + .+| ..|+..++++|+.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 5567777788999999999999999887532100000001 1 122222221 1 111 35899999999999
Q ss_pred HccCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCchHHHHHHhcCcHHHHHHHHhcCCcchHHHHHHH
Q 000184 686 FLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAA 765 (1890)
Q Consensus 686 ~~~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~~~aa~a 765 (1890)
.+-++. ...+..|+..+..+.++++..+...|.++ .+...+ -.++++.++..+++.+++++.-||.+
T Consensus 256 -~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 256 -YPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp -TTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred -HhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 665433 34455555556888999999999999998 222111 36778889999999999999999999
Q ss_pred HHHHhhcCccchhHhhhhhhhccHHHHHHHhhccC-cccchHHHHHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHh
Q 000184 766 IARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS-GSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVS 844 (1890)
Q Consensus 766 L~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~-~~v~~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 844 (1890)
|.-+..... - ...+.-+.+.|.+-| -...+--.++.|+.|+.-.... ...+..++.|..
T Consensus 323 LiPIA~p~~-l---------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a----------~~dp~LVPRL~P 382 (800)
T 3oc3_A 323 LCHFPITDS-L---------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL----------SIPPERLKDIFP 382 (800)
T ss_dssp HTTSCCSST-H---------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC----------CCCSGGGGGTGG
T ss_pred hhhhcchhh-H---------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc----------ccChHHHHHHHh
Confidence 987771111 1 134445556666544 4444467788899887655321 123477888999
Q ss_pred HhhcCChhHHHHHHHHHHHHhcCCccchhhhhccCccchHHHHHHHhhcCCCcee
Q 000184 845 SIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVK 899 (1890)
Q Consensus 845 ~l~~~~~~~~~~a~~~L~~l~~~~~~~~g~~i~~~~~~~~~~~~~~l~s~~~~~r 899 (1890)
.+++.-+.||..+.+.|.++. .|.....+|..+|=.++++++
T Consensus 383 FLRHtITSVR~AVL~TL~tfL-------------~~~~LRLIFQNILLE~neeIl 424 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS-------------EESIDFLVAEVVLIEEKDEIR 424 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC-------------CHHHHHHHHHHHHHCSCHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH-------------hhhHHHHHHHHHHhCCcHHHH
Confidence 999999999999999987772 455666667666666666555
No 104
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.6 Score=54.05 Aligned_cols=184 Identities=13% Similarity=0.077 Sum_probs=120.0
Q ss_pred HHHhhcCCcHhHHHHHHHHHHHhccCChhhH--HHH-H-HcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCCc-
Q 000184 1415 LVGLLYGRNYMLHEAISRALVKLGKDRPSCK--LEM-V-KAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKGP- 1489 (1890)
Q Consensus 1415 L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~--~~l-~-~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~- 1489 (1890)
|-+-|.+.+=..|..|...|.++-...+... ... . -....+.+.+.+.|.+..+...+..++..+..........
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 6788889999999999999887765432111 111 1 1234556677888888888888888887776543321111
Q ss_pred -----cccCChHHHHHH-hhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHH
Q 000184 1490 -----SAAKVVEPLFLL-LTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLS 1563 (1890)
Q Consensus 1490 -----~~~~~v~~Li~l-L~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~ 1563 (1890)
.....++.|+.- +.++. +.++..+..++..+.+.... ....++.++..+++.+|.++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k--~~~~~~a~~~l~~~~~~~~~-------~~~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR--ATTKTQSMSCILSLCGLDTS-------ITQSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC--HHHHHHHHHHHHHHHHTSSS-------SHHHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc--HHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 123345555543 55544 77788888888777543221 1234678888999999999999999999
Q ss_pred Hhhcccccccchhc----cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000184 1564 HLLLEEQLQKDPVT----QQVIGPLIRVLGSGIHILQQRAVKALVSIAL 1608 (1890)
Q Consensus 1564 ~l~~~~~~~~~l~~----~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~ 1608 (1890)
++...--.. .+.. ...+..+..++++.+++||..|..++..+-.
T Consensus 165 ~~l~~fg~~-~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLT-NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTT-TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCC-cCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 877521111 1110 1234567788899999999999999988843
No 105
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.46 Score=55.02 Aligned_cols=192 Identities=15% Similarity=0.097 Sum_probs=125.5
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHHccCchhhHH--HHH-hCCChHHHHHHhCCCCHHHHHHHHHHHHHHhc--Cch
Q 000184 659 TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREV--AAV-ARDALSPLVVLAGSPVLEVAEQATCALANLIL--DSE 733 (1890)
Q Consensus 659 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~--~~~-~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~--~~~ 733 (1890)
-+| |-.-|.+.+-..+..+...|..+....+..... .+. -....+.+-..+.+.+..++..++.++..++. ...
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 355 667788999999999999999987654321110 011 12345566688899999999999999998863 211
Q ss_pred ----HHHHHHhcCcHHHHHH-HHhcCCcchHHHHHHHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHH
Q 000184 734 ----VSEKAIAEEIILPATR-VLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEA 808 (1890)
Q Consensus 734 ----~~~~~~~~~~v~~L~~-ll~~~~~~~~~~aa~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~a 808 (1890)
.........+++.|++ ++.+....++..+..++..+........ ..+..++..+.+.++.+. ..+
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~---------~~~e~l~~~l~~Knpkv~-~~~ 159 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT---------QSVELVIPFFEKKLPKLI-AAA 159 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH---------HHHHHHGGGGGCSCHHHH-HHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHhccCHHHH-HHH
Confidence 1222234556666664 3566666688888888877764333222 234456667777778888 889
Q ss_pred HHHHHHHHhcCCCCCCCCCccceeecCCCChhhHHhHhhcCChhHHHHHHHHHHHHhc
Q 000184 809 LDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCR 866 (1890)
Q Consensus 809 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~a~~~L~~l~~ 866 (1890)
+..|..+++..+... .. .+...+..+..+..++.+.++.||+.|.+++..++.
T Consensus 160 l~~l~~~l~~fg~~~-~~----~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 160 ANCVYELMAAFGLTN-VN----VQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHHTTTT-CC----HHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCc-CC----chhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 999998887643211 01 111223456678889999999999999998877643
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.18 E-value=1.7 Score=49.05 Aligned_cols=176 Identities=13% Similarity=0.143 Sum_probs=114.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHH----hhCCCCHHHHHHHHHHHHHccc----CChhc
Q 000184 416 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS----LLGLSSEQQQECSVALLCLLSN----ENDDS 487 (1890)
Q Consensus 416 Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~----lL~~~~~~v~~~A~~aL~nL~~----~~~~~ 487 (1890)
+...|-+.|...+..++..|......++. ..+ ..+..+.+ -+.+.+..+...+..+|..+.. .+...
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~---~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPR--SLL---SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHH---HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHH---HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44555667888888888888775543322 111 12233333 2336788888877777776531 10000
Q ss_pred HHHHHhcCCcHHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcC
Q 000184 488 KWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 567 (1890)
Q Consensus 488 ~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~ 567 (1890)
...- ..-.+|.|+.-+.+..+.+|+.+-.++..++...+.. ...+.+++-+++.+.+++..+...+..+...
T Consensus 126 ~~~e-a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 126 SQEE-VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp CHHH-HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 1000 0126899999999999999998888887776521221 2567778888888888888888877776431
Q ss_pred CCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchH---HHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000184 568 SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV---ETMIKILSSTKEETQAKSASALAGIF 644 (1890)
Q Consensus 568 ~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i---~~Lv~lL~s~~~~~~~~A~~aL~~L~ 644 (1890)
. ++....++ |.+..++.+.+..+|..|..++..+.
T Consensus 198 ~------------------------------------------G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 198 A------------------------------------------GISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp H------------------------------------------CSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred c------------------------------------------CCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 11123357 88999999999999999999998777
Q ss_pred hc
Q 000184 645 ET 646 (1890)
Q Consensus 645 ~~ 646 (1890)
..
T Consensus 236 ~~ 237 (266)
T 2of3_A 236 KF 237 (266)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 107
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.86 E-value=45 Score=46.82 Aligned_cols=225 Identities=12% Similarity=0.027 Sum_probs=125.5
Q ss_pred hhhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHh--hcCCHHHHHHHHHHHHHhh
Q 000184 16 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLL--RSGSLAVKIQAATVLGSLC 93 (1890)
Q Consensus 16 ~~~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL--~~~~~~~~~~aa~~L~~L~ 93 (1890)
.....++.++++...+.+.+...|..|-..|..+.+.+ .+++.+...| .+.++.+|..|+.+|.+..
T Consensus 7 ~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I 75 (1204)
T 3a6p_A 7 NALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVV 75 (1204)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 34567788999988887666667889998888876643 2334444444 3557799999999999876
Q ss_pred cc------chhhHHHHhcCChHHHHHhhcC---CCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccC
Q 000184 94 KE------NELRVKVLLGGCIPPLLGLLKS---SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL 164 (1890)
Q Consensus 94 ~~------~~~~~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~ 164 (1890)
+. ++.|..+. ...++.+.+.-.. .+.-++...+.++..+..-+.++.. ...++.|+..++.
T Consensus 76 ~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-------p~ll~~L~~~~~~-- 145 (1204)
T 3a6p_A 76 KFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-------PDMLIELDTLSKQ-- 145 (1204)
T ss_dssp HHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-------TTHHHHHHHHHHT--
T ss_pred HHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-------hHHHHHHHHHhcC--
Confidence 33 12233222 2223333322111 3466777778888887763222222 2456777777654
Q ss_pred CCCchHHHHHHHHHHHhccC-------ChhHHH----HHHhcCCHHHHHH----hhcC-------------------CCH
Q 000184 165 KSGNVVDNLLTGALRNLSTS-------TEGFWA----ATVQAGGIDILVK----LLTL-------------------GQS 210 (1890)
Q Consensus 165 ~~~~~v~~~~~~~L~~L~~~-------~~~~~~----~i~~~g~v~~Lv~----lL~~-------------------~~~ 210 (1890)
++.....++.+|..++.+ ....+. .+.+. ++.++. ++.. ++.
T Consensus 146 --~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~--~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1204)
T 3a6p_A 146 --GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN--MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANC 221 (1204)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhH
Confidence 233445566777777632 111111 12221 333333 3322 123
Q ss_pred HHHHHHHHHHHHHhhcCchhhhHhhcc--chHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcC
Q 000184 211 STQAHVCFLLACMMEEDVSVCSRVLAA--DATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 270 (1890)
Q Consensus 211 ~v~~~a~~~L~~L~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~ 270 (1890)
.+...+..++.+....-+ ...+++. ..++.+..++.. .+++..|+.+|..+....
T Consensus 222 ~l~~~aL~~l~~~l~Wi~--~~~i~~~~~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 222 RVGVAALNTLAGYIDWVS--MSHITAENCKLLEILCLLLNE---QELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHHHHHHHHTTTTTSC--HHHHHTTTSHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhccC--HHHHHhccchHHHHHHHHcCC---HHHHHHHHHHHHHHHhCC
Confidence 345556666644332222 1122232 256666665553 468999999999998744
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=91.72 E-value=53 Score=45.03 Aligned_cols=219 Identities=8% Similarity=-0.000 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhc-CCHHHHHHHHHHHHHhhccc-
Q 000184 19 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKEN- 96 (1890)
Q Consensus 19 ~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~-~~~~~~~~aa~~L~~L~~~~- 96 (1890)
...+.+++..+.++ +.+.|..|-..|..+-+.+ ++++....+|.. .++.+|..|+.+|.+..+..
T Consensus 27 v~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp-----------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W 93 (1073)
T 3gjx_A 27 INLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHP-----------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRW 93 (1073)
T ss_dssp HHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCS-----------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCc-----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhh
Confidence 56788888888775 3567888888887766643 455555556654 47899999999999977432
Q ss_pred -----hhhHHHHhcCChHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCC
Q 000184 97 -----ELRVKVLLGGCIPPLLGLLKS-----SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKS 166 (1890)
Q Consensus 97 -----~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~ 166 (1890)
+.|.. ++...+..+.+.-.. .++-.+...+.++..+.....++.. ...++.++..++.
T Consensus 94 ~~L~~e~~~~-LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-------p~fi~dLv~~~~~---- 161 (1073)
T 3gjx_A 94 KILPRNQCEG-IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-------PTFISDIVGASRT---- 161 (1073)
T ss_dssp GGSCHHHHHH-HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-------TTHHHHHHHHHHH----
T ss_pred hhCCHHHHHH-HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-------cHHHHHHHHHhCC----
Confidence 22222 222233334333221 2344555566666666652222222 2345666666543
Q ss_pred CchHHHHHHHHHHHhccC---C--h----hH----HHHHHhcCCHHHHHHhhc-----CCCHHHHHHHHHHHHHHhhcCc
Q 000184 167 GNVVDNLLTGALRNLSTS---T--E----GF----WAATVQAGGIDILVKLLT-----LGQSSTQAHVCFLLACMMEEDV 228 (1890)
Q Consensus 167 ~~~v~~~~~~~L~~L~~~---~--~----~~----~~~i~~~g~v~~Lv~lL~-----~~~~~v~~~a~~~L~~L~~~~~ 228 (1890)
++......+.+|..|+.. . + .. +..+.+. ++.++.++. ..++++...+..+|.+....-+
T Consensus 162 ~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~ 239 (1073)
T 3gjx_A 162 SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP 239 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC
Confidence 122333456677776633 0 0 11 1123332 555555543 4577888888899988876543
Q ss_pred hhhhHhhccchHHHHH-HHHcCCCCHhHHHHHHHHHHHhhhc
Q 000184 229 SVCSRVLAADATKQLL-KLLGSGNEASVRAEAAGALKSLSDH 269 (1890)
Q Consensus 229 ~~~~~i~~~g~i~~Lv-~lL~~~~~~~~~~~Aa~aL~~Ls~~ 269 (1890)
...+++.+.++.++ .+|. +++.+..|+.+|..+...
T Consensus 240 --i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 240 --LGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp --THHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHHS
T ss_pred --HHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHhc
Confidence 34567777788774 5554 357999999999998764
No 109
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.82 E-value=4.5 Score=46.69 Aligned_cols=201 Identities=12% Similarity=0.160 Sum_probs=148.1
Q ss_pred hhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChh----HHHHHHH-cCchHHHHHhhcCCCHHHHHHHHHHHHHHHc
Q 000184 613 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKD----LRESSIA-VKTLWSVMKLLDVGSECILVEASRCLAAIFL 687 (1890)
Q Consensus 613 ~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~----~~~~~~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 687 (1890)
-..+.+..|+..|..=+-+.|..++.+..++-+.... ..+.+.. ..++..|+..-. ++++...+-..|.-...
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir 152 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHH
Confidence 4457788999999999999999999999999876432 2222222 122333333322 33444444444444433
Q ss_pred cCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHh-cCchHHHHHHh---cCcHHHHHHHHhcCCcchHHHHH
Q 000184 688 SVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI-LDSEVSEKAIA---EEIILPATRVLCEGTISGKTLAA 763 (1890)
Q Consensus 688 ~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~-~~~~~~~~~~~---~~~v~~L~~ll~~~~~~~~~~aa 763 (1890)
+ ....+. +...+.+..+.+....++-++..-|..++..|+ .++....+++. +.......+++.+++--+|+++.
T Consensus 153 ~-e~la~~-iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 153 H-EPLAKI-ILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp S-HHHHHH-HHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred h-HHHHHH-HhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 3 224444 667777888899999999999999999999988 45666666663 35667777888888878999999
Q ss_pred HHHHHHhhcCccchhHhhhhhhhccHHHHHHHhhccCcccchHHHHHHHHHHHhc
Q 000184 764 AAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRS 818 (1890)
Q Consensus 764 ~aL~~L~~~~~~~~~~~~~~~~~g~l~~li~~l~~~~~~v~~~~al~~L~~l~~~ 818 (1890)
+-|+.++-++.....|..|+....-++-++.+|++.+..+. .+|+-++--+..+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq-~EAFhVFKvFVAN 284 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQ-FEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHHHC
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchh-hhhhhheeeeeeC
Confidence 99999999999988899999999999999999999998888 8888877766433
No 110
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.71 E-value=2.9 Score=45.81 Aligned_cols=140 Identities=9% Similarity=0.033 Sum_probs=97.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHH
Q 000184 1286 QPLVEILNTGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTV 1365 (1890)
Q Consensus 1286 ~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~ 1365 (1890)
+..-.+.+++.+++|..|+.+|+.+ . +. ..+++.+...+...++..|++-++..++.++. ..
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~------~~ 135 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--KD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCK------KI 135 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--TS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH------HH
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--Cc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH------hc
Confidence 3344455677889999999999888 3 11 12455555546556688899999988887753 01
Q ss_pred HhhCchHHHHHHHccCChHHHHHHHHHHHhccC---CchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCCh
Q 000184 1366 AAARCVEPLVSLLVTEFSPAQHSVVRALDKLVD---DEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRP 1442 (1890)
Q Consensus 1366 ~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~~---~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~ 1442 (1890)
.....++.+.....+++..+|..|.+.+...+. .....+. +++.|-.+..+++.-||++...+|..+++.+|
T Consensus 136 ~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~-----ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 136 EYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNE-----AIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp CTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHH-----HHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHH-----HHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 122367788899999999999999999855331 1112222 24555567778999999999999999999997
Q ss_pred hhHHHH
Q 000184 1443 SCKLEM 1448 (1890)
Q Consensus 1443 ~~~~~l 1448 (1890)
+-...+
T Consensus 211 d~V~~~ 216 (240)
T 3l9t_A 211 DLVKIE 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 654443
No 111
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=89.18 E-value=17 Score=41.93 Aligned_cols=157 Identities=10% Similarity=0.054 Sum_probs=93.1
Q ss_pred HHHHHHhhcCHHHHHhhhhcCcHHHHH-HHHh----cCChhHHHHHHHHHHHhhccchhhhhhhh--cCChHHHHHHhcc
Q 000184 1222 TDLLGILFSSAEIRRHESAFAAVSQLV-AVLR----LGGRGARYSAAKALESLFSADHIRNAESA--RQAVQPLVEILNT 1294 (1890)
Q Consensus 1222 ~~ll~~l~~~~~~~~~~~~~g~i~~Lv-~lL~----~~~~~~r~~Aa~aL~~L~~~~~~r~~i~~--~~~i~~Lv~lL~~ 1294 (1890)
-++++++..++.....+.+.+.-..++ .+++ .+.+..+..+.+.+.|++.....|..+.. ...++.+...+.+
T Consensus 123 LDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~ 202 (304)
T 3ebb_A 123 LDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSG 202 (304)
T ss_dssp HHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSS
T ss_pred HHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 345666666666554443333223333 2222 23456799999999999998888887664 3345556666666
Q ss_pred CChHHHHHHHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHHhhCChhhHHHHHhhCchHHH
Q 000184 1295 GLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGVLFGNTRIRSTVAAARCVEPL 1374 (1890)
Q Consensus 1295 ~~~~~~~~A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~L~~~~~~~~~~~~~~~i~~L 1374 (1890)
.+...+.+++..+.|++......... . -....+..+..++....+.+.......++++|...+.....+.+.-.+...
T Consensus 203 ~nknl~iA~ATl~~NlAv~~~~~~~~-~-~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~ 280 (304)
T 3ebb_A 203 SNKNIHIALATLALNYSVCFHKDHNI-E-GKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQ 280 (304)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSCCH-H-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHhhcCCc-h-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHH
Confidence 77888999999999999721100000 0 011255566677766556677777888888887654333344443344444
Q ss_pred HHHHcc
Q 000184 1375 VSLLVT 1380 (1890)
Q Consensus 1375 v~lL~~ 1380 (1890)
++-+.+
T Consensus 281 v~~~~~ 286 (304)
T 3ebb_A 281 IKKYSS 286 (304)
T ss_dssp GGGGGG
T ss_pred HHHHHh
Confidence 444443
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=88.21 E-value=5 Score=43.92 Aligned_cols=140 Identities=13% Similarity=0.127 Sum_probs=100.3
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHH-HhhcCChhHHHHHHHHHHHHhc-CCCCCcHHH
Q 000184 498 PPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLW-LLKNGSANGKEIAAKTLNHLIH-KSDTATISQ 575 (1890)
Q Consensus 498 ~~Lv~lL~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~-ll~~~~~~~~~~Aa~aL~~L~~-~~~~~~i~~ 575 (1890)
+..-.+..++..++|-.|+.+|+.+ ...+ ..++.+.. +..+.+..+++.++.++..++. ......++.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~ 143 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPI 143 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHH
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3444566677889999999988877 3211 13455554 5556788999999999999986 333356788
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcChhHHHH
Q 000184 576 LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRES 653 (1890)
Q Consensus 576 L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~ 653 (1890)
+.....++++.++..|.+.+...+...... ......+|.|..+..+++.-+|..-++.|..+++.+++....
T Consensus 144 ~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k------~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 144 IDEWLKSSNLHTRRAATEGLRIWTNRPYFK------ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp HHHHHHCSSHHHHHHHHHHTCSGGGSTTTT------TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHhhHHHhccchhh------cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 888899999999998888765433321110 111224777778888899999999999999999998876443
No 113
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=88.15 E-value=94 Score=42.57 Aligned_cols=226 Identities=15% Similarity=0.062 Sum_probs=124.3
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHhhccchhhHHHHhcCChHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCCCC-ccc
Q 000184 66 AVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKD-YVG 143 (1890)
Q Consensus 66 ~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~ls~~~~~~-~~~ 143 (1890)
.+..++..+-+++++.|..|-..|..+-+.++ +++.+..+|. +.++.+|..|+..|.+.-...-+. ...
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 34455555666778888888888887754443 3445555564 357899999999998754411100 011
Q ss_pred cchhhhcCChHHHHHHHhccC--CCCchHHHHHHHHHHHhccC-ChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHH
Q 000184 144 SKIFSTEGVVPVLWEQLKNGL--KSGNVVDNLLTGALRNLSTS-TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 220 (1890)
Q Consensus 144 ~~~~~~~g~ip~L~~ll~~~~--~~~~~v~~~~~~~L~~L~~~-~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 220 (1890)
.+..++..++..+........ ..++.+....+.++..+... -+..|. ..++-++.++++ ++........+|
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp-----~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP-----TFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-----HHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 122333333333333221110 22344555666666666532 123343 456777777754 455666777777
Q ss_pred HHHhhc---Cch-----h-----hhHhhc--cchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcCHHHHHHHHhcCChHH
Q 000184 221 ACMMEE---DVS-----V-----CSRVLA--ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPA 285 (1890)
Q Consensus 221 ~~L~~~---~~~-----~-----~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~~~~~~~i~~~g~i~~ 285 (1890)
..+... ... . +..+.. ...++.+...+.+..+.++...+..+|..+.+=-+ -..+++.+-++.
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLIST 251 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHH
Confidence 776633 100 0 111111 12233344455555556777777788877664221 345667776776
Q ss_pred HH-HhhcCCCccccchhhhHHHHHHHHHHHHHhhC
Q 000184 286 MI-NATIAPSKEFMQGEYAQALQENAMCALANISG 319 (1890)
Q Consensus 286 Lv-~ll~~~~~~~~~~~~~~~l~e~a~~aL~nl~~ 319 (1890)
|+ ..+.. +.+++.|+.+|..+.+
T Consensus 252 L~~~~L~~-----------~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 252 LIYKFLNV-----------PMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHTSSS-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-----------hHHHHHHHHHHHHHHh
Confidence 63 55532 5789999999999875
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=86.15 E-value=45 Score=36.83 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=107.8
Q ss_pred HHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCCC-----HHHHHHHHHHHHHHhc-CChHHHHHHHhCCCHHHHH
Q 000184 470 QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGS-----AKAKEDSASILRNLCN-HSEDIRACVESADAVPALL 543 (1890)
Q Consensus 470 ~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~~~e~a~~aL~~L~~-~~~~~r~~i~~~g~i~~Lv 543 (1890)
..+|...|.-+++ +++.|..+.++...--|--+|+..+ +-.|-.+.++++.|.. ++++.-..+.+.+.+|..+
T Consensus 73 VcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 73 VCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3456667777885 8999999999988877777777653 4677788999999886 3456667778899999999
Q ss_pred HHhhcCChhHHHHHHHHHHHHhcCCCCCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHH
Q 000184 544 WLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK 623 (1890)
Q Consensus 544 ~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~ 623 (1890)
+.++.|+.-.|..|.-++.++-.++.. |.++....+-.-. -...+..++.
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~G---------------------------L~YiC~t~eRF~a---v~~vL~~mV~ 201 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTG---------------------------LAYICQTYERFSH---VAMILGKMVL 201 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHH---------------------------HHHHTSSHHHHHH---HHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchh---------------------------HHHHHccHHHHHH---HHHHHHHHHH
Confidence 999999999999999999888653211 1111111111100 0112333333
Q ss_pred -HhcCCCHHHHHHHHHHHHHHhhcChhHHHHHH
Q 000184 624 -ILSSTKEETQAKSASALAGIFETRKDLRESSI 655 (1890)
Q Consensus 624 -lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~ 655 (1890)
+..++++.+.++..++-..|+.+ +..++++.
T Consensus 202 ~l~~~ps~RLLKhiircYlRLsdn-~rar~aL~ 233 (268)
T 2fv2_A 202 QLSKEPSARLLKHVVRCYLRLSDN-PRAREALR 233 (268)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 44678999999999999999985 55665544
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.46 E-value=47 Score=40.23 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=88.8
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCC--CCcHHHHHHHHhc
Q 000184 505 ESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD--TATISQLTALLTS 582 (1890)
Q Consensus 505 ~~~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~--~~~i~~L~~lL~~ 582 (1890)
..++++.+.-|+..+.....+-|+.+.. ++..+++|..+.+..++..|.+.|..+|.+ + +.....|..+|..
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kiaDvL~QlLqt 111 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVADILTQLLQT 111 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHHhc
Confidence 3457889999999999998877877654 788899999999999999999999999987 3 2334446677777
Q ss_pred CCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000184 583 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 642 (1890)
Q Consensus 583 ~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~ 642 (1890)
+++.-...+-.+|..+....+ .+.+..|..-+.++++.+|+.+..-|..
T Consensus 112 dd~~E~~~V~~sL~sllk~Dp-----------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 112 DDSAEFNLVNNALLSIFKMDA-----------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp CCHHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 777666667777776655443 2235555555555778888887776653
No 116
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=85.03 E-value=8.5 Score=44.53 Aligned_cols=152 Identities=13% Similarity=0.036 Sum_probs=87.6
Q ss_pred HHHHHHHHhhCCCccchhhhhcCcHHHH----HHHhc-CCCHHHHHHHHHHHHHhhccCchhhHHHHhc--CcHHHHHHh
Q 000184 389 RTIEALASLYGNPLLSIKLENSEAKRLL----VGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGR--EGIQLLISL 461 (1890)
Q Consensus 389 ~a~~aL~~L~~~~~~~~~l~~~g~i~~L----v~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~--g~i~~Lv~l 461 (1890)
.++..++-+.-+|.....+.+.+.-..+ ...+. ...+..+..+++++.|+.... ..+..+... ..++.+...
T Consensus 121 PvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~g~~~l~~~~~~il~~~~~~ 199 (304)
T 3ebb_A 121 PALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-AGQKLMMSQRESLMSHAIEL 199 (304)
T ss_dssp HHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-HHHHHHHHTHHHHHHHHHGG
T ss_pred HHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-hhHHHHHHHHHHHHHHHHHH
Confidence 4444444444555544444332222223 23332 245667899999999998763 344444332 235666667
Q ss_pred hCCCCHHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccC-CCHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHH
Q 000184 462 LGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNLCNHSEDIRACVESADAVP 540 (1890)
Q Consensus 462 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~ 540 (1890)
+.+++..++..++..+.|++......+..=........+.++++. .+.+...+++.+|++|...+++.++.....|+-.
T Consensus 200 ~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~ 279 (304)
T 3ebb_A 200 KSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDS 279 (304)
T ss_dssp GSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred hcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHH
Confidence 777899999999999999985211100000001133344444543 4788999999999999986555555444444444
Q ss_pred H
Q 000184 541 A 541 (1890)
Q Consensus 541 ~ 541 (1890)
.
T Consensus 280 ~ 280 (304)
T 3ebb_A 280 Q 280 (304)
T ss_dssp H
T ss_pred H
Confidence 3
No 117
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=84.99 E-value=21 Score=39.45 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=105.9
Q ss_pred HHHHHHHHhccCchhhHHHHhhhCChHHHHHHHHhhcCC----hhhHHHHHHHHHHhh--CChhhHHHHHhhCchHHHHH
Q 000184 1303 AIAALVRLLSENPSRALAVADVEMNAVDVLCRILSSNCS----MELKGDAAELCGVLF--GNTRIRSTVAAARCVEPLVS 1376 (1890)
Q Consensus 1303 A~~aL~~L~~~~~~~~~~~~~v~~g~v~~L~~lL~~~~~----~~~~~~a~~~l~~L~--~~~~~~~~~~~~~~i~~Lv~ 1376 (1890)
|+..|..++.+++.+..+ +++...-.|..+|+..+. +.++-....+++-|. +++++...+..++.+|...+
T Consensus 76 aLaLlQcvAshpetr~~F---l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 76 ALALLQCVASHPETRSAF---LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHCTTTHHHH---HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHcCcchhhHH---HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 666667788888888888 578888899999976532 345666777788876 45667777788899999999
Q ss_pred HHccCChHHHHHHHHHHHhccCCchHHHHHHH--------cCChHHHH-HhhcCCcHhHHHHHHHHHHHhccCChhhHHH
Q 000184 1377 LLVTEFSPAQHSVVRALDKLVDDEQLAELVAA--------HGAVIPLV-GLLYGRNYMLHEAISRALVKLGKDRPSCKLE 1447 (1890)
Q Consensus 1377 lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~--------~gav~~L~-~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 1447 (1890)
.+..|++-.+.-|.-.+.++..|+.....+.. ..++..++ .+.+++++++.+..++|-..++.+ |..+..
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~a 231 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREA 231 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHH
Confidence 99999999999999999998855554333211 11222233 344588999999999999999988 677766
Q ss_pred H
Q 000184 1448 M 1448 (1890)
Q Consensus 1448 l 1448 (1890)
+
T Consensus 232 L 232 (268)
T 2fv2_A 232 L 232 (268)
T ss_dssp H
T ss_pred H
Confidence 6
No 118
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=84.85 E-value=14 Score=42.00 Aligned_cols=112 Identities=14% Similarity=0.146 Sum_probs=86.7
Q ss_pred HhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHH
Q 000184 180 NLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEA 259 (1890)
Q Consensus 180 ~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A 259 (1890)
||--.+.....-.+..+||..+......++.++....+++|...+... .....--...+|.+++.+....+.++.-..
T Consensus 268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak--sL~~t~L~e~LPFi~~~i~~h~eDdvvYSG 345 (619)
T 3c2g_A 268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK--ALAKTPLENILPFLLRLIEIHPDDEVIYSG 345 (619)
T ss_dssp HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG--GGGTSCCTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH--HHhhccccccchHHHHHhccCCCcceEEec
Confidence 333333344444788999999999999999999999999997654322 222222356788899888877778899999
Q ss_pred HHHHHHhhhcCHHHHHHHHhcCChHHHHHhhcCC
Q 000184 260 AGALKSLSDHCKDARREIAGSNGIPAMINATIAP 293 (1890)
Q Consensus 260 a~aL~~Ls~~~~~~~~~i~~~g~i~~Lv~ll~~~ 293 (1890)
.+.|.|...+....|+.-+..|+|+.|-..+...
T Consensus 346 TGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 346 TGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred chHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 9999999998888898889999999998887654
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.63 E-value=9.4 Score=52.71 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=96.5
Q ss_pred ChHHHHHhhcCCcHhHHHHH--HHHHHHhccCChhhHHHHHHcCcHHHHHHHhccC----ChhHHHHHHHHHHHHHhccc
Q 000184 1411 AVIPLVGLLYGRNYMLHEAI--SRALVKLGKDRPSCKLEMVKAGVIESVLDILHEA----PDFLCSAFAELLRILTNNAG 1484 (1890)
Q Consensus 1411 av~~L~~lL~~~~~~vr~~A--~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~----~~~v~~~aa~~l~~L~~~~~ 1484 (1890)
++..+.+++.++.....+++ +..+..+.... .. .+..+..++..+ .+.++..+.-+++.|.+..-
T Consensus 357 a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~~Pt--~e-------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c 427 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAEATQIVASTLSNQQAT--RE-------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC 427 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCC--HH-------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhccCCCC--HH-------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHh
Confidence 35556667776655544432 22223333222 22 456666666542 33444444444444443211
Q ss_pred ccCCccccCChHHHHHHh----hccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCC-------CCHH
Q 000184 1485 IAKGPSAAKVVEPLFLLL----TRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDS-------PAPA 1553 (1890)
Q Consensus 1485 ~~~~~~~~~~v~~Li~lL----~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s-------~~~~ 1553 (1890)
..........++++.+.+ .+.+ .+.+.-++++|+|+ ..+..++.|..++.. ....
T Consensus 428 ~~~~~c~~~~v~~i~~~l~~~~~~~~--~~~~~~~LkaLGN~------------g~p~~l~~l~~~l~~~~~~~~~~~~r 493 (1056)
T 1lsh_A 428 ANTVSCPDELLQPLHDLLSQSSDRAK--EEEIVLALKALGNA------------GQPNSIKKIQRFLPGQGKSLDEYSTR 493 (1056)
T ss_dssp TTCSSCCGGGTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------TCGGGHHHHHTTSTTSSSCCCCSCHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhcCC--hHHHHHHHHHhhcc------------CChhHHHHHHHhhcCccccccccchH
Confidence 111111223466666555 4433 66667799999999 666778888888852 3467
Q ss_pred HHHHHHHHHHHhhcccccccchhccCcHHHHHHHh--cCCCHHHHHHHHHHHHHH
Q 000184 1554 VQQLAAELLSHLLLEEQLQKDPVTQQVIGPLIRVL--GSGIHILQQRAVKALVSI 1606 (1890)
Q Consensus 1554 vq~~A~~aL~~l~~~~~~~~~l~~~~~i~~Lv~lL--~s~~~~v~~~A~~aL~~l 1606 (1890)
+|..|+++|.++.... ...+-+.|.++. ...++++|..|+..|.+-
T Consensus 494 vr~aAi~ALr~~~~~~-------p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 494 VQAEAIMALRNIAKRD-------PRKVQEIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp HHHHHHHTTTTGGGTC-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhc-------hHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 8999999999887521 112335667777 568889999998888653
No 120
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=83.39 E-value=11 Score=52.08 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=103.0
Q ss_pred chHHHHHHhhc----CCHHHHHHHHHHHHHh----hccchhhHHHHhcCChHHHHHh----hcCCCHHHHHHHHHHHHHH
Q 000184 66 AVPVLVSLLRS----GSLAVKIQAATVLGSL----CKENELRVKVLLGGCIPPLLGL----LKSSSAEGQIAAAKTIYAV 133 (1890)
Q Consensus 66 ~v~~Lv~lL~~----~~~~~~~~aa~~L~~L----~~~~~~~~~i~~~g~i~~Lv~l----L~~~~~~~~~~a~~aL~~l 133 (1890)
.+..+..++++ .++.++..+.-+++.+ |.++..+.. ..++++... +..++.+.+..+.+||.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 34445556554 2344444444444444 433222111 124444444 4577888888899999998
Q ss_pred hcCCCCCccccchhhhcCChHHHHHHHhcc---CCC-CchHHHHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhh--cC
Q 000184 134 SQGGAKDYVGSKIFSTEGVVPVLWEQLKNG---LKS-GNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLL--TL 207 (1890)
Q Consensus 134 s~~~~~~~~~~~~~~~~g~ip~L~~ll~~~---~~~-~~~v~~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL--~~ 207 (1890)
.. + ..++.|...+... ..+ ...++..+..+|+.++...+... -+.+.++. ..
T Consensus 468 g~---p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~ 525 (1056)
T 1lsh_A 468 GQ---P-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVA 525 (1056)
T ss_dssp TC---G-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTT
T ss_pred CC---h-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCC
Confidence 76 1 2356666665431 112 22367778899999986543322 35678888 44
Q ss_pred CCHHHHHHHHHHHHHHhhcCchhhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhhcC
Q 000184 208 GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 270 (1890)
Q Consensus 208 ~~~~v~~~a~~~L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~~~ 270 (1890)
.+.++|..|+..|- ..+++ ...+..+...+....+.++.......|.+++...
T Consensus 526 e~~EvRiaA~~~Lm---~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 526 IKSELRIRSCIVFF---ESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp SCHHHHHHHHHHHH---HTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHH---HHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 67888888877772 22231 2346777888888777889999999999998754
No 121
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=80.99 E-value=55 Score=37.82 Aligned_cols=199 Identities=12% Similarity=0.086 Sum_probs=138.3
Q ss_pred hhcCChHHHHHHhccCChHHHHHHHHHHHHHhccC-----chhhHHHHhhhCChHHHHHHHHhhcCChhhHHHHHHHHHH
Q 000184 1280 SARQAVQPLVEILNTGLEREQHAAIAALVRLLSEN-----PSRALAVADVEMNAVDVLCRILSSNCSMELKGDAAELCGV 1354 (1890)
Q Consensus 1280 ~~~~~i~~Lv~lL~~~~~~~~~~A~~aL~~L~~~~-----~~~~~~~~~v~~g~v~~L~~lL~~~~~~~~~~~a~~~l~~ 1354 (1890)
...+.+..|+..|..-+-+.|..+.....++.... +...++. . --+.|.-++....+.++--.+-.+|+.
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~----~-~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYIC----T-QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHH----T-CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHH----c-CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 44567899999999988899999888777776522 1222331 1 122233333332334555666677777
Q ss_pred hhCChhhHHHHHhhCchHHHHHHHccCChHHHHHHHHHHHhcc-CCchHHHHHHHc---CChHHHHHhhcCCcHhHHHHH
Q 000184 1355 LFGNTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLV-DDEQLAELVAAH---GAVIPLVGLLYGRNYMLHEAI 1430 (1890)
Q Consensus 1355 L~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~---gav~~L~~lL~~~~~~vr~~A 1430 (1890)
...+......+.....+..+......++-++..-|...+..+. ............ ......-.||+++|.-+||.+
T Consensus 150 cir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 150 CIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp HHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 7888888877878788889999999999999999988888877 444433333332 235667789999999999999
Q ss_pred HHHHHHhccCChhhHHHH----HHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhccc
Q 000184 1431 SRALVKLGKDRPSCKLEM----VKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAG 1484 (1890)
Q Consensus 1431 ~~aL~~l~~~~~~~~~~l----~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~ 1484 (1890)
++-|+.+-.++ .+...| .+..-+..+..+|++....++.+|--.+-....|+.
T Consensus 230 lKLLgelLldr-~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 230 LKLLGELLLDR-HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHSG-GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhCc-hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 99999999996 666555 334466777888888888887776655544444443
No 122
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=80.19 E-value=9.2 Score=46.22 Aligned_cols=123 Identities=11% Similarity=0.102 Sum_probs=90.2
Q ss_pred ccCChHHHHHHHHHHHhcc-CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHH
Q 000184 1379 VTEFSPAQHSVVRALDKLV-DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESV 1457 (1890)
Q Consensus 1379 ~~~~~~~~~~a~~aL~~L~-~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L 1457 (1890)
..+++..+.-|+.-+.+++ .-++..+.. +..++++..+.+..+|..|++.|..++.+.--.| +.+.|
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~k-------iaDvL 105 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATGENLPR-------VADIL 105 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHH-------HHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhh-------HHHHH
Confidence 3577888899999999998 667776655 8999999999999999999999999998732222 66888
Q ss_pred HHHhccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHh
Q 000184 1458 LDILHEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNI 1522 (1890)
Q Consensus 1458 ~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl 1522 (1890)
..+|..++.......-.+|..|-.... .+.+..|+.-+..++ ..+|..++.-|..-
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~--e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGE--DIVRERAIKFLSTK 161 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSC--HHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccc--hHHHHHHHHHHHHH
Confidence 999988776544444445544433222 234777777777666 78888777777644
No 123
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=76.52 E-value=30 Score=41.48 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=99.5
Q ss_pred HHHHhcCCcHHHHHhccC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHH-hCCCHHHHHHHhhcCChhHHHH
Q 000184 489 WAITAAGGIPPLVQILES-----------GSAKAKEDSASILRNLCNHSEDIRACVE-SADAVPALLWLLKNGSANGKEI 556 (1890)
Q Consensus 489 ~~i~~~g~i~~Lv~lL~~-----------~~~~~~e~a~~aL~~L~~~~~~~r~~i~-~~g~i~~Lv~ll~~~~~~~~~~ 556 (1890)
+.+. .+|+..|+++|.. .+...+..++.+|..+... ......+. ....+..|...+.+..+.++..
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~ 181 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMID 181 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHHHHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHHHHH
Confidence 4444 5677777777641 2346777889999999874 44444444 4778899999999999999999
Q ss_pred HHHHHHHHhcCCCC-CcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcC-CCHHHHH
Q 000184 557 AAKTLNHLIHKSDT-ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS-TKEETQA 634 (1890)
Q Consensus 557 Aa~aL~~L~~~~~~-~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s-~~~~~~~ 634 (1890)
+...|.-+|..+++ ++.+. +.+|+.++.. ..+..-...++..|++ .+.+.+.
T Consensus 182 aleLL~~lc~~~~~~gG~~~---------------VL~Al~~~~~-----------~~e~~RF~~lv~~L~~~~~~e~~~ 235 (383)
T 3eg5_B 182 AAKLLSALCILPQPEDMNER---------------VLEAMTERAE-----------MDEVERFQPLLDGLKSGTSIALKV 235 (383)
T ss_dssp HHHHHHHHHTCCSSTTHHHH---------------HHHHHHHHHH-----------HHTSCTTHHHHHTTSTTSCHHHHH
T ss_pred HHHHHHHHHhCcCcCCcHHH---------------HHHHHHHHHH-----------hCCCCcHHHHHHHHHccCcHHHHH
Confidence 99999999986652 22332 2333332211 1123336678888876 5666766
Q ss_pred HHHHHHHHHhhcChh------HHHHHHHcCchHHHHHhhcCCCHHH
Q 000184 635 KSASALAGIFETRKD------LRESSIAVKTLWSVMKLLDVGSECI 674 (1890)
Q Consensus 635 ~A~~aL~~L~~~~~~------~~~~~~~~g~i~~Lv~lL~~~~~~v 674 (1890)
.+...+-.+..+.++ .+..+...|..+.+-++=...++.+
T Consensus 236 ~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 236 GCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhH
Confidence 666655566655442 4445567777776666434445543
No 124
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=76.41 E-value=19 Score=39.98 Aligned_cols=142 Identities=12% Similarity=0.134 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHH-hCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCc-HHHHHHHHhcCCc
Q 000184 508 SAKAKEDSASILRNLCNHSEDIRACVE-SADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT-ISQLTALLTSDLP 585 (1890)
Q Consensus 508 ~~~~~e~a~~aL~~L~~~~~~~r~~i~-~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~-i~~L~~lL~~~~~ 585 (1890)
+...+..++.+|..+... ......+. ..+.+..|...+.+..+.++..+...|.-+|..+++.+ .+.++
T Consensus 67 ~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL-------- 137 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVL-------- 137 (233)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHH--------
Confidence 346677889999999874 44444444 46788999999988899999999999999988765433 33333
Q ss_pred chHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcC-CCHHHHHHHHHHHHHHhhcChh------HHHHHHHcC
Q 000184 586 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS-TKEETQAKSASALAGIFETRKD------LRESSIAVK 658 (1890)
Q Consensus 586 ~~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s-~~~~~~~~A~~aL~~L~~~~~~------~~~~~~~~g 658 (1890)
+|+.+.... .+..-...+++.+++ .+.+.+..+...+-.+..+.++ .|..+...|
T Consensus 138 -------~Al~~~~~~-----------~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 138 -------EAMTERAEM-----------DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp -------HHHHHHHHH-----------HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHh-----------CCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 333222110 112235667777764 5566666655555556655443 444566677
Q ss_pred chHHHHHhhcCCCHHHHH
Q 000184 659 TLWSVMKLLDVGSECILV 676 (1890)
Q Consensus 659 ~i~~Lv~lL~~~~~~v~~ 676 (1890)
..+.+-++-...++....
T Consensus 200 l~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 200 LHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred hHHHHHHHhccCCHHHHH
Confidence 766666554555555433
No 125
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=75.75 E-value=34 Score=38.33 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=102.9
Q ss_pred CCCChhhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 000184 12 MEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS 91 (1890)
Q Consensus 12 ~~~~~~~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~ 91 (1890)
.++-.++.++|..++.+.+..+ +.+|...+....++.-.++- ... ...++.++.+-.+.+.++|.+.+..+.+
T Consensus 7 ~~~~~~~~~~v~~lln~A~~~~--~~~kl~~L~qa~el~~~~dp--~ll---~~~l~~il~~~~~~~~~vrk~~~~Fi~e 79 (257)
T 3gs3_A 7 DEKTATARAKVVDWCNELVIAS--PSTKCELLAKVQETVLGSCA--ELA---EEFLESVLSLAHDSNMEVRKQVVAFVEQ 79 (257)
T ss_dssp --CHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHTTTTG--GGH---HHHHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHhhhcC--cHHHHHHHHHHHHHHHccCH--hHH---HHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 3455677788888888877643 36899999999998776531 122 4677888887777778999999999999
Q ss_pred hhccchhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHH
Q 000184 92 LCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVD 171 (1890)
Q Consensus 92 L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~ 171 (1890)
.|+... . ....+++.|..+|..+++.+...+..+..++ .|...+.+......+. .
T Consensus 80 ~~~~k~---~-l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i-------------------Y~~~l~~i~~~~~~~~-~- 134 (257)
T 3gs3_A 80 VCKVKV---E-LLPHVINVVSMLLRDNSAQVIKRVIQACGSI-------------------YKNGLQYLCSLMEPGD-S- 134 (257)
T ss_dssp HHHHCG---G-GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH-------------------HHHHHHHHTTSSSCCH-H-
T ss_pred HHHHHH---H-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-------------------HHHHHHHHhcCCCCcc-h-
Confidence 984332 1 2224678888889888877765554433222 1222232222111000 0
Q ss_pred HHHHHHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000184 172 NLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 224 (1890)
Q Consensus 172 ~~~~~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~ 224 (1890)
.+..|..+.+- =..++.+..+++..++..|.+.+-...
T Consensus 135 -------------~~~~W~~m~~l--K~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 135 -------------AEQAWNILSLI--KAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp -------------HHHHHHHHHHH--HHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHH--HHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 01233333221 244666777888999999888886654
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=73.95 E-value=1.1e+02 Score=42.68 Aligned_cols=298 Identities=11% Similarity=-0.011 Sum_probs=153.3
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHhhCCCccchhhhhcCcHHHHHH-Hh-cCCCHHHHHHHHHHHHHhhccC-----
Q 000184 370 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVG-LI-TMATNEVQEELVRALLKLCNNE----- 442 (1890)
Q Consensus 370 i~~~L~~ll~~~~~~~~~~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~-lL-~~~~~~v~~~a~~aL~~L~~~~----- 442 (1890)
+...+...+.+.++...|..|-..|..+..+|+ +...+.. +. .+.+..+|..|+..|.+....+
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 344455556665555457778888877755543 2222222 33 4568899999999999875431
Q ss_pred chhhHHHHhcCcHHHHHHhhC---CCCHHHHHHHHHHHHHcccCC-hhcHHHHHhcCCcHHHHHhccCCCHHHHHHHHHH
Q 000184 443 GSLWRALQGREGIQLLISLLG---LSSEQQQECSVALLCLLSNEN-DDSKWAITAAGGIPPLVQILESGSAKAKEDSASI 518 (1890)
Q Consensus 443 ~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~A~~aL~nL~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~e~a~~a 518 (1890)
++.+..| +...++.+..... .....++...+.++..++... ++.+ .+.++.|++++.+ ++..++.+..+
T Consensus 84 ~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~i 156 (1204)
T 3a6p_A 84 RLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ-GETQTELVMFI 156 (1204)
T ss_dssp HHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC-CHHHHHHHHHH
Confidence 1222222 2222333332211 145788888888888887532 2222 2467888888876 56678889999
Q ss_pred HHHHhcCC------hHHHH-----HHHhC--CCHHHHHHHhhcC-------------------ChhHHHHHHHHHHHHhc
Q 000184 519 LRNLCNHS------EDIRA-----CVESA--DAVPALLWLLKNG-------------------SANGKEIAAKTLNHLIH 566 (1890)
Q Consensus 519 L~~L~~~~------~~~r~-----~i~~~--g~i~~Lv~ll~~~-------------------~~~~~~~Aa~aL~~L~~ 566 (1890)
|..|+.+. ...|. .+.+. .+++.+..++++. ++.+...+..++.++..
T Consensus 157 L~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~ 236 (1204)
T 3a6p_A 157 LLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID 236 (1204)
T ss_dssp HHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh
Confidence 99997630 01111 22221 1223333334321 12234444555544322
Q ss_pred CCC--------CCcHHHHHHHHhcCCcchHHHHHHHHHHHhhhcCchHHHHHhhhh--cchHHHHHHHhc--------CC
Q 000184 567 KSD--------TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAA--NDAVETMIKILS--------ST 628 (1890)
Q Consensus 567 ~~~--------~~~i~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~~--~~~i~~Lv~lL~--------s~ 628 (1890)
--+ ...++.+..++ .+++++..|.+||..+......++.....+.. ..++..+...+. +.
T Consensus 237 Wi~~~~i~~~~~~ll~~l~~~l--~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~ 314 (1204)
T 3a6p_A 237 WVSMSHITAENCKLLEILCLLL--NEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEK 314 (1204)
T ss_dssp TSCHHHHHTTTSHHHHHHHHGG--GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHH
T ss_pred ccCHHHHHhccchHHHHHHHHc--CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccH
Confidence 111 11222233222 35778899999999888754333211111111 112334444432 11
Q ss_pred CHHHHHHHHHHHHHHhhcChhHHHHHH----------HcCchHHHHHhhcCCCHHHHHHHHHHHHHHHcc
Q 000184 629 KEETQAKSASALAGIFETRKDLRESSI----------AVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 688 (1890)
Q Consensus 629 ~~~~~~~A~~aL~~L~~~~~~~~~~~~----------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 688 (1890)
+.+..+.-+..+..++.. ....+. -.+.++.+.....+++..+...++..-..+...
T Consensus 315 d~e~~k~l~~ll~~lg~~---l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 315 HYVFLKRLCQVLCALGNQ---LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 345666666666666621 111111 013456666666666766666666655555443
No 127
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=73.78 E-value=53 Score=39.03 Aligned_cols=162 Identities=16% Similarity=0.195 Sum_probs=102.9
Q ss_pred hhhHHHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchhhHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 000184 16 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE 95 (1890)
Q Consensus 16 ~~~~~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~ 95 (1890)
-.+.++|..++.+.+..+ +.+|...+....++.-.++- ..+ ...++.++.+-.+.+.++|.|.+..|.+.|+.
T Consensus 21 ~~~~~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dp--sLl---~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~ 93 (386)
T 3o2t_A 21 MTTSERVVDLLNQAALIT--NDSKITVLKQVQELIINKDP--TLL---DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR 93 (386)
T ss_dssp CCHHHHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCG--GGG---GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCH--HHH---HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 346778888888887754 35899999999997664321 112 47889999998888999999999999999852
Q ss_pred chhhHHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCccccchhhhcCChHHHHHHHhccCCCCchHHHHHH
Q 000184 96 NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLT 175 (1890)
Q Consensus 96 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~~~~~~~~~~~~~~~~g~ip~L~~ll~~~~~~~~~v~~~~~ 175 (1890)
. ...+ ..+++.|..+|..+++.+...+..+..++- |...+.+......+. .
T Consensus 94 ~---~el~-~~~l~~L~~LL~d~d~~V~K~~I~~~tslY-------------------pl~f~~i~~~~~~~~-~----- 144 (386)
T 3o2t_A 94 D---IELL-LKLIANLNMLLRDENVNVVKKAILTMTQLY-------------------KVALQWMVKSRVISE-L----- 144 (386)
T ss_dssp C---GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-------------------HHHHHHHHHC-CCCH-H-----
T ss_pred H---HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-------------------HHHHHHHhcCCCcch-h-----
Confidence 2 1222 346788888888888777655544433221 222222222111100 0
Q ss_pred HHHHHhccCChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000184 176 GALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 224 (1890)
Q Consensus 176 ~~L~~L~~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~ 224 (1890)
.+..|..+.+. -..++.+..+++..++..|.+.+-...
T Consensus 145 ---------~e~~W~~m~~l--K~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 145 ---------QEACWDMVSAM--AGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp ---------HHHHHHHHHHH--HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHH--HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 01334443321 245666678888999999998887654
No 128
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=71.46 E-value=27 Score=39.69 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhCCCccchhhhhcCcHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhC-CCC
Q 000184 388 ERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSS 466 (1890)
Q Consensus 388 ~~a~~aL~~L~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~ 466 (1890)
.++..-|.-|.++.....-+...+++..+....+.++.++....++.|...+....- +. .--.+.+|.++..++ +++
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL-~~-t~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKAL-AK-TPLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGG-GT-SCCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHH-hh-ccccccchHHHHHhccCCC
Confidence 344454544455555566777889999999999999999998888888776654211 10 001245788888776 678
Q ss_pred HHHHHHHHHHHHHcccCChhcHHHHHhcCCcHHHHHhccCC-------CHHHHHHHHHHHHHH
Q 000184 467 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-------SAKAKEDSASILRNL 522 (1890)
Q Consensus 467 ~~v~~~A~~aL~nL~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~e~a~~aL~~L 522 (1890)
+++.+...+.|+|...+....++..+..|+|+.|-...... +..-+..++.+++|-
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 89999999999999987777788888999999998876432 233345566666554
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=65.69 E-value=71 Score=38.26 Aligned_cols=144 Identities=13% Similarity=0.184 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHhCCCHHHHHHHhhcCChhHHHHHHHHHHHHhcCCCCCc-HHHHHHHHhcCCcc
Q 000184 508 SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT-ISQLTALLTSDLPE 586 (1890)
Q Consensus 508 ~~~~~e~a~~aL~~L~~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~Aa~aL~~L~~~~~~~~-i~~L~~lL~~~~~~ 586 (1890)
+...+..++.+|..+..........+...+++..|...+.+..+.++..+...|..+|..+++.+ .+.+
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~V---------- 140 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERV---------- 140 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHH----------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHH----------
Confidence 35667788999999987433344444457788999999988889999999999999988665433 3333
Q ss_pred hHHHHHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhc-CCCHHHHHHHHHHHHHHhhcChh------HHHHHHHcCc
Q 000184 587 SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS-STKEETQAKSASALAGIFETRKD------LRESSIAVKT 659 (1890)
Q Consensus 587 ~~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~-s~~~~~~~~A~~aL~~L~~~~~~------~~~~~~~~g~ 659 (1890)
.+|+.+... ..+..-...+++.++ +.+.+.+..+...+-.+..+.++ .|..+...|.
T Consensus 141 -----L~Al~~~~~-----------~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL 204 (386)
T 2bnx_A 141 -----LEAMTERAE-----------MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGL 204 (386)
T ss_dssp -----HHHHHHHHH-----------HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTH
T ss_pred -----HHHHHHHHH-----------hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCh
Confidence 333332211 011223566777776 45666666666655566665543 4455667777
Q ss_pred hHHHHHhhcCCCHHHHHH
Q 000184 660 LWSVMKLLDVGSECILVE 677 (1890)
Q Consensus 660 i~~Lv~lL~~~~~~v~~~ 677 (1890)
.+.+-++-...++.+..+
T Consensus 205 ~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 205 HQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHhccCChhHHHH
Confidence 776665555566654443
No 130
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=59.97 E-value=1.2e+02 Score=36.14 Aligned_cols=138 Identities=22% Similarity=0.256 Sum_probs=88.6
Q ss_pred cCcHHHHHHHhc-----------CCCHHHHHHHHHHHHHhhccCchhhHHHHhcCcHHHHHHhhCCCCHHHHHHHHHHHH
Q 000184 410 SEAKRLLVGLIT-----------MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLC 478 (1890)
Q Consensus 410 ~g~i~~Lv~lL~-----------~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 478 (1890)
.+|+..|+..|. ..+...+..+++||..+.....+....+....++..|...+.++.+.++..+...|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 356666666653 224578889999999998765555555556678999999999999999999998888
Q ss_pred HcccCCh-hc-HHH----------HHhcCCcHHHHHhccCC-CHHHHHHHHHHHHHHhcCChH------HHHHHHhCCCH
Q 000184 479 LLSNEND-DS-KWA----------ITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSED------IRACVESADAV 539 (1890)
Q Consensus 479 nL~~~~~-~~-~~~----------i~~~g~i~~Lv~lL~~~-~~~~~e~a~~aL~~L~~~~~~------~r~~i~~~g~i 539 (1890)
-+|.... ++ ... ..+..-..+++..|.++ +.+.+..+...+-.+....++ .|..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 7774332 22 222 22345678888988874 666666555555555543222 23444455555
Q ss_pred HHHHHHhhc
Q 000184 540 PALLWLLKN 548 (1890)
Q Consensus 540 ~~Lv~ll~~ 548 (1890)
+.+- -++.
T Consensus 268 ~il~-~lr~ 275 (383)
T 3eg5_B 268 QVLQ-ELRE 275 (383)
T ss_dssp HHHH-HHTT
T ss_pred HHHH-HHhc
Confidence 4444 4554
No 131
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=58.01 E-value=1.3e+02 Score=33.16 Aligned_cols=127 Identities=12% Similarity=0.091 Sum_probs=81.7
Q ss_pred HHHHHHHHhhhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCh--h-HH---HHH------HHcC
Q 000184 591 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK--D-LR---ESS------IAVK 658 (1890)
Q Consensus 591 a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~--~-~~---~~~------~~~g 658 (1890)
++.||. ++-+...++...+....++..|...|.++++.++..+...|..+|..++ . .. +++ .+..
T Consensus 74 ~l~CLk---almn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~ 150 (233)
T 2f31_A 74 IIRCLK---AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVE 150 (233)
T ss_dssp HHHHHH---HHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHH---HHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcc
Confidence 444444 4445555666677778889999999999999999999999998887543 1 11 111 1223
Q ss_pred chHHHHHhhc-CCCHHHHHHHHHHHHHHHccCchhh-----HHHHHhCCChHHHHHHhCCCCHHHHHH
Q 000184 659 TLWSVMKLLD-VGSECILVEASRCLAAIFLSVRENR-----EVAAVARDALSPLVVLAGSPVLEVAEQ 720 (1890)
Q Consensus 659 ~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~-----~~~~~~~~~v~~Lv~ll~~~~~ev~~~ 720 (1890)
-..+++..+. +.+.+.+..+...+-.+..+.++.. |.-+...|..+.+-++-...++++..+
T Consensus 151 RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 151 RFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp TTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 4777888886 4566777777777766666655422 223556666666655555566665544
No 132
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=56.80 E-value=1.3e+02 Score=35.86 Aligned_cols=121 Identities=11% Similarity=0.108 Sum_probs=75.3
Q ss_pred cCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHhccCChhHHHHHHHHHHHHHhcccccCC
Q 000184 1409 HGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDILHEAPDFLCSAFAELLRILTNNAGIAKG 1488 (1890)
Q Consensus 1409 ~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL~~~~~~v~~~aa~~l~~L~~~~~~~~~ 1488 (1890)
.++++.++++-.+.+..+|+-.+.-+...+....+.. ..+++.|..+|.+++..+...+..++.++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tsl--------- 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQL--------- 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH---------
Confidence 4568999999999999999999998888776544433 23778888888877776665555444332
Q ss_pred ccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchhhhhhccCCCCHHHHHHHHHHHHHhh
Q 000184 1489 PSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIEPLIPLLDSPAPAVQQLAAELLSHLL 1566 (1890)
Q Consensus 1489 ~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~ 1566 (1890)
.+..++.+.......+....+-..+..+ -..++.++++.+..+|..+++.+..+-
T Consensus 128 ------Ypl~f~~i~~~~~~~~~~e~~W~~m~~l-----------------K~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 128 ------YKVALQWMVKSRVISELQEACWDMVSAM-----------------AGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp ------HHHHHHHHHHC-CCCHHHHHHHHHHHHH-----------------HHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCCCcchhHHHHHHHHHHH-----------------HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 3344444433221122222222222222 223445567788889999998888754
No 133
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=52.95 E-value=44 Score=33.96 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=62.4
Q ss_pred cCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc--cccccchhccCcHHHHHHHhcC------CCHHHHHHHHHHHHHHh
Q 000184 1536 SHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE--EQLQKDPVTQQVIGPLIRVLGS------GIHILQQRAVKALVSIA 1607 (1890)
Q Consensus 1536 ~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~--~~~~~~l~~~~~i~~Lv~lL~s------~~~~v~~~A~~aL~~l~ 1607 (1890)
...++..|..-|.+.++.+|..|+.+|..|..+ ..+...+.+..+++.|++++.. .++.|+...+..+...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 345678888889999999999999999988874 5667778888899999999953 67899999999999887
Q ss_pred ccC
Q 000184 1608 LTW 1610 (1890)
Q Consensus 1608 ~~~ 1610 (1890)
...
T Consensus 126 ~~f 128 (149)
T 3g2s_A 126 VGL 128 (149)
T ss_dssp HHC
T ss_pred HHh
Confidence 644
No 134
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=47.72 E-value=4.3e+02 Score=36.59 Aligned_cols=212 Identities=11% Similarity=0.124 Sum_probs=117.5
Q ss_pred HHHHhhcC---ChhHHHHHHHHHHHHhcCCCCCcHHHHHHH-HhcCCcchHHHHHHHHHHHhhhcCchH-HHHHhhhh--
Q 000184 542 LLWLLKNG---SANGKEIAAKTLNHLIHKSDTATISQLTAL-LTSDLPESKVYVLDALKSMLSVVSFSD-ILREGSAA-- 614 (1890)
Q Consensus 542 Lv~ll~~~---~~~~~~~Aa~aL~~L~~~~~~~~i~~L~~l-L~~~~~~~~~~a~~aL~~L~~~~~~~~-~~~~~~~~-- 614 (1890)
+++.++++ .+.+-+.-.+++.+.....+...+.-++-+ +.+.....+..+...+..........+ .++..+..
T Consensus 312 ild~lks~l~~~k~i~eAwlK~I~~~~~~~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~ 391 (1323)
T 3s4w_B 312 VFDVIKSAIRYEKTISEAWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHY 391 (1323)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHhCCCcccccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhH
Confidence 44455442 344444445566665554455555554433 344444445555555554443322111 22222211
Q ss_pred ---cchHHHHH----HHhcCCCHHHHHHHHHHHHHHhhcChhHHHHHHHcCchHHHHHhhcCCCHHHHHHHHHHHHHHHc
Q 000184 615 ---NDAVETMI----KILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 687 (1890)
Q Consensus 615 ---~~~i~~Lv----~lL~s~~~~~~~~A~~aL~~L~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 687 (1890)
..-.+.++ .++++.++.++.-+...-..++...++.+ +..++..|+.-..+++..-...|+..|..|+.
T Consensus 392 ~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~----qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~ 467 (1323)
T 3s4w_B 392 LVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYC----QQEVVGALVTHVCSGTEAEVDTALDVLLELIV 467 (1323)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHH----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchh----HHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh
Confidence 12234333 36688999999999998888888765543 33567777777777777667779999999986
Q ss_pred cCchhhHHHHHhCCChHHHHHHhCCCCHHHHHHHHHHHHHHhcCc-hHHHHHHhcCcHHHHHHHHhcCCcchHH
Q 000184 688 SVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDS-EVSEKAIAEEIILPATRVLCEGTISGKT 760 (1890)
Q Consensus 688 ~~~~~~~~~~~~~~~v~~Lv~ll~~~~~ev~~~aa~aL~nL~~~~-~~~~~~~~~~~v~~L~~ll~~~~~~~~~ 760 (1890)
..+...+. -+-.+..++..+.+-+..--...-..|+.++... ......+.+++--.+-+.+.+...+.++
T Consensus 468 ~~~~~l~~---~a~~l~giLD~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~Kr 538 (1323)
T 3s4w_B 468 LNASAMRL---NAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKL 538 (1323)
T ss_dssp HCHHHHHH---THHHHHGGGGGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHH
T ss_pred cCHHHHhH---HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhh
Confidence 55432211 1223455556666666544455577777776311 1111123445555566677777777655
No 135
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=44.36 E-value=2.8e+02 Score=32.94 Aligned_cols=121 Identities=10% Similarity=0.048 Sum_probs=79.6
Q ss_pred hhcCchHHHHHhhhhcchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcCh-hH-HHHH----------HHcCchHHHHHhh
Q 000184 600 SVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK-DL-RESS----------IAVKTLWSVMKLL 667 (1890)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~i~~Lv~lL~s~~~~~~~~A~~aL~~L~~~~~-~~-~~~~----------~~~g~i~~Lv~lL 667 (1890)
++-+...++...+....++..|...|.+.++.++..+...|..+|..+. +- ...+ .+..-..+|+..+
T Consensus 84 almN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l 163 (386)
T 2bnx_A 84 AFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 163 (386)
T ss_dssp HHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHT
T ss_pred HHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 4444555566667778889999999999999999999999988887643 11 1111 1223467788888
Q ss_pred c-CCCHHHHHHHHHHHHHHHccCchhh-----HHHHHhCCChHHHHHHhCCCCHHHHHH
Q 000184 668 D-VGSECILVEASRCLAAIFLSVRENR-----EVAAVARDALSPLVVLAGSPVLEVAEQ 720 (1890)
Q Consensus 668 ~-~~~~~v~~~a~~aL~~L~~~~~~~~-----~~~~~~~~~v~~Lv~ll~~~~~ev~~~ 720 (1890)
. +.+.+.+..++..+-.+..+.++.. |.-+...|..+.+-++-...++++..+
T Consensus 164 ~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 164 KSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 5 5666777777777767766655422 233666666666655555566666544
No 136
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=42.27 E-value=4e+02 Score=29.62 Aligned_cols=141 Identities=13% Similarity=0.146 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcc--CCchHHHHHHHcCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHHHHHHcCcHHHHHHHh
Q 000184 1384 PAQHSVVRALDKLV--DDEQLAELVAAHGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKLEMVKAGVIESVLDIL 1461 (1890)
Q Consensus 1384 ~~~~~a~~aL~~L~--~~~~~~~~~~~~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~l~~~~~i~~L~~lL 1461 (1890)
+.+.....-...+. .|++....+ ++.++.+..+.+.++|+-.+.-+...+...++.... +++.|..+|
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~-----l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~-----~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEF-----LESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH-----VINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHH-----HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHH-----HHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 34444444445544 455544444 778888777888899999988888777655443333 677888888
Q ss_pred ccCChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHHHHHHhhcCCCcccccccccCCchh
Q 000184 1462 HEAPDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQAIE 1541 (1890)
Q Consensus 1462 ~~~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~aL~nl~~~~~~~~~~~~~~~~~i~ 1541 (1890)
.+++..+...+..++.++ .+..++.+......++.....-..+..+ -.
T Consensus 100 ~d~d~~V~K~~I~~~~~i---------------Y~~~l~~i~~~~~~~~~~~~~W~~m~~l-----------------K~ 147 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSI---------------YKNGLQYLCSLMEPGDSAEQAWNILSLI-----------------KA 147 (257)
T ss_dssp TCSCHHHHHHHHHHHHHH---------------HHHHHHHHTTSSSCCHHHHHHHHHHHHH-----------------HH
T ss_pred cCCCHHHHHHHHHHHHHH---------------HHHHHHHHhcCCCCcchHHHHHHHHHHH-----------------HH
Confidence 876666655554444332 4444455443221111112122222222 23
Q ss_pred hhhhccCCCCHHHHHHHHHHHHHhh
Q 000184 1542 PLIPLLDSPAPAVQQLAAELLSHLL 1566 (1890)
Q Consensus 1542 ~Lv~lL~s~~~~vq~~A~~aL~~l~ 1566 (1890)
.++.+.++.+..+|..+.+.+..+-
T Consensus 148 ~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 148 QILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCcchHHHHHHHHHHHH
Confidence 3455566778888988888887754
No 137
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=40.11 E-value=1.4e+02 Score=30.76 Aligned_cols=108 Identities=9% Similarity=0.035 Sum_probs=69.5
Q ss_pred ChHHHHHHHhccCCCCchHHHHHHHHHHHhcc-CChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCc-h
Q 000184 152 VVPVLWEQLKNGLKSGNVVDNLLTGALRNLST-STEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDV-S 229 (1890)
Q Consensus 152 ~ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~-~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-~ 229 (1890)
-+..+++-..+.....+++.... -++.+.. ..++.+ .++..|.+-|.++++.++..|+.+|-.++.+.+ .
T Consensus 15 p~~~~IekATs~~~~~~Dw~~~l--eicD~I~~~~~~~k------eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~ 86 (163)
T 1x5b_A 15 PFEQDVEKATNEYNTTEDWSLIM--DICDKVGSTPNGAK------DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKI 86 (163)
T ss_dssp TTHHHHHHHTCTTCSSCCHHHHH--HHHHHHHHSSSHHH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHH--HHHHHHhCCCccHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 34566666666555555554322 1222221 222222 246678888899999999999999977765443 3
Q ss_pred hhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhh
Q 000184 230 VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLS 267 (1890)
Q Consensus 230 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls 267 (1890)
...++.....+..|++++....+..|+..+...+..-+
T Consensus 87 Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 87 FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 55577778888899999876556778877777665544
No 138
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=38.01 E-value=1.4e+02 Score=30.16 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=71.8
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhchh-hHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccc--hh
Q 000184 22 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN--EL 98 (1890)
Q Consensus 22 v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~-~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~--~~ 98 (1890)
+.+++++..+.+...++ -.....+.+..+... +++ .++..|.+.|+++++.+...|...|..+.+|- ..
T Consensus 2 ~~~~iekATs~~l~~~d-w~~~leicD~I~~~~~~~k-------~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~f 73 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQD-WSAIQNFCEQVNTDPNGPT-------HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKF 73 (148)
T ss_dssp HHHHHHHHHCTTCSSCC-HHHHHHHHHHHHHSSHHHH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHcCCCCCCcC-HHHHHHHHHHHHcCCccHH-------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 45677777775443223 234444444444432 333 45677899999999999999999999998763 34
Q ss_pred hHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 000184 99 RVKVLLGGCIPPLLGLLKS------SSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 99 ~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~aL~~ls~ 135 (1890)
+..+....-+..|+.++.. .+.+++..+...+...+.
T Consensus 74 h~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 74 HSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4556666667778888863 367888888888877766
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.86 E-value=1e+02 Score=33.75 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=70.5
Q ss_pred hHHHHHHHhccCCCCchHHHHHHHHHHHhcc-CChhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCch-h
Q 000184 153 VPVLWEQLKNGLKSGNVVDNLLTGALRNLST-STEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-V 230 (1890)
Q Consensus 153 ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~-~~~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~-~ 230 (1890)
+..+++-..+....++++.... -+..+.. ..++.+ .++..|.+-|.++++.++..|+.+|-.++.+.+. .
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~il--eicD~I~~~~~~~k------~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWESIL--QICDLIRQGDTQAK------YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHH--HHHHHHHTTSSCHH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHH--HHHHHHhCCCccHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHH
Confidence 3445555555555555554321 1222222 222222 2367788888999999999999999777644333 5
Q ss_pred hhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhhh
Q 000184 231 CSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSD 268 (1890)
Q Consensus 231 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls~ 268 (1890)
..++.....+..|+++++...+.+|+..+...+...+.
T Consensus 81 ~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 81 HDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 66777788888888888776677888888888876653
No 140
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=37.27 E-value=1.5e+02 Score=30.78 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=74.5
Q ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHHhchh-hHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccch--
Q 000184 21 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-- 97 (1890)
Q Consensus 21 ~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~-~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~-- 97 (1890)
.+.+++++..+.+...++ -.....+.++.+... +.+ .++..|.+.|+++++.++..|...|..+.+|-.
T Consensus 13 ~~~~~IekATs~~l~~~D-w~~ileicD~I~~~~~~~k-------~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~ 84 (171)
T 1juq_A 13 SLESWLNKATNPSNRQED-WEYIIGFCDQINKELEGPQ-------IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR 84 (171)
T ss_dssp CHHHHHHHHTCTTCSSCC-HHHHHHHHHHHHHSTTHHH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH
T ss_pred cHHHHHHHHcCCCCCCcC-HHHHHHHHHHHHcCCccHH-------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH
Confidence 477899988876543333 344445555555433 333 456678899999999999999999999987633
Q ss_pred hhHHHHhcCChHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 000184 98 LRVKVLLGGCIPPLLGLLKS------SSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 98 ~~~~i~~~g~i~~Lv~lL~~------~~~~~~~~a~~aL~~ls~ 135 (1890)
-+..+....-+..|+.++.. .+.+++..+...+...+.
T Consensus 85 Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 85 FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 44456555667778888752 357888888888887766
No 141
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=34.08 E-value=86 Score=31.44 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=59.4
Q ss_pred cCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc--cccccchhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 000184 1536 SHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE--EQLQKDPVTQQVIGPLIRVLGSGIHILQQRAVKALVSIAL 1608 (1890)
Q Consensus 1536 ~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~--~~~~~~l~~~~~i~~Lv~lL~s~~~~v~~~A~~aL~~l~~ 1608 (1890)
...++..|.+-|.+.++.+|..|+.+|..|..+ ..+...+.+...++.|++++...++.|+...+..+...+.
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 344567777788899999999999999988774 4566677777888889999987889999999998887764
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=32.12 E-value=1.6e+02 Score=30.26 Aligned_cols=106 Identities=11% Similarity=0.128 Sum_probs=70.2
Q ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHHhchh-hHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccch--h
Q 000184 22 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--L 98 (1890)
Q Consensus 22 v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~-~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~--~ 98 (1890)
+.+++++..+.....++ -.....+.++.+... .++ .++..|.+.|+++++.++..|...|..+.++-. -
T Consensus 16 ~~~~IekATs~~~~~~D-w~~~leicD~I~~~~~~~k-------eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F 87 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTED-WSLIMDICDKVGSTPNGAK-------DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF 87 (163)
T ss_dssp THHHHHHHTCTTCSSCC-HHHHHHHHHHHHHSSSHHH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHcCCCCCCcC-HHHHHHHHHHHhCCCccHH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 45888888775543333 333444555554432 333 456678899999999999999999998887632 3
Q ss_pred hHHHHhcCChHHHHHhhcC-CCHHHHHHHHHHHHHHhc
Q 000184 99 RVKVLLGGCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 99 ~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~ls~ 135 (1890)
+..+....-+..|+.++.. .++.++..+...+...+.
T Consensus 88 h~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 88 HLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 4445544556667777764 567888888877777665
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=32.08 E-value=3.5e+02 Score=27.26 Aligned_cols=108 Identities=13% Similarity=0.041 Sum_probs=71.5
Q ss_pred hHHHHHHHhccCCCCchHHHHHHHHHHHhccCC-hhHHHHHHhcCCHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCc-hh
Q 000184 153 VPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SV 230 (1890)
Q Consensus 153 ip~L~~ll~~~~~~~~~v~~~~~~~L~~L~~~~-~~~~~~i~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-~~ 230 (1890)
+..+++-..+....++.+.... -++.+.... ++.+. ++..|.+-+.++++.++..|+.+|-.++...+ ..
T Consensus 12 ~~~~IekATs~~l~~~dw~~il--eicD~I~~~~~~pk~------a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~f 83 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASIN--GFCEQLNEDFEGPPL------ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRF 83 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHH--HHHHHGGGSSSHHHH------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHH--HHHHHHHCCCCcHHH------HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 4555666666655566655322 122222222 22222 36778888899999999999999977775444 34
Q ss_pred hhHhhccchHHHHHHHHcCC-----CCHhHHHHHHHHHHHhhh
Q 000184 231 CSRVLAADATKQLLKLLGSG-----NEASVRAEAAGALKSLSD 268 (1890)
Q Consensus 231 ~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~~Aa~aL~~Ls~ 268 (1890)
..++.....+..|++++... .+..|+..+...+..-+.
T Consensus 84 h~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 84 HDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 57777888899999999642 356788888877766554
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=31.81 E-value=4.2e+02 Score=30.08 Aligned_cols=144 Identities=12% Similarity=0.102 Sum_probs=90.1
Q ss_pred HHHHccC------ChHHHHHHHHHHHhccCCchHHHHHHH--cCChHHHHHhhcCCcHhHHHHHHHHHHHhccCChhhHH
Q 000184 1375 VSLLVTE------FSPAQHSVVRALDKLVDDEQLAELVAA--HGAVIPLVGLLYGRNYMLHEAISRALVKLGKDRPSCKL 1446 (1890)
Q Consensus 1375 v~lL~~~------~~~~~~~a~~aL~~L~~~~~~~~~~~~--~gav~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 1446 (1890)
..++.++ +.+.-..|..-|..++.|-..-..+.. ...+..|+ +.....+.+|+.|...++..-.++|....
T Consensus 28 r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~ 106 (315)
T 3qml_C 28 RNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVE 106 (315)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHH
Confidence 4455555 344677888999999977766665554 23334444 22345678999999999999999998877
Q ss_pred HHHH--cCcHHHHHHHhcc-------CChhHHHHHHHHHHHHHhcccccCCccccCChHHHHHHhhccCCChhhHHHHHH
Q 000184 1447 EMVK--AGVIESVLDILHE-------APDFLCSAFAELLRILTNNAGIAKGPSAAKVVEPLFLLLTRSEFGPDGQHSALQ 1517 (1890)
Q Consensus 1447 ~l~~--~~~i~~L~~lL~~-------~~~~v~~~aa~~l~~L~~~~~~~~~~~~~~~v~~Li~lL~~~~~~~~v~~~al~ 1517 (1890)
.+.+ ...+..+..-|.. ..+.+......++-.|..++... ...++..|.+++...+.++..|..++.
T Consensus 107 ~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F----~~~~m~~L~~ly~~~~~d~~~k~Kvl~ 182 (315)
T 3qml_C 107 FINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL----PIYSTVVLQNVYERNNKDKQLQIKVLE 182 (315)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC------CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh----hhccHHHHHHHHccCCCCHHHHHHHHH
Confidence 7644 2444444444432 23334444444444444433211 345778888888866234888888888
Q ss_pred HHHHhh
Q 000184 1518 VLVNIL 1523 (1890)
Q Consensus 1518 aL~nl~ 1523 (1890)
.+..+.
T Consensus 183 li~d~f 188 (315)
T 3qml_C 183 LISKIL 188 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 888774
No 145
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=31.47 E-value=43 Score=34.00 Aligned_cols=74 Identities=19% Similarity=0.233 Sum_probs=60.4
Q ss_pred CCchhhhhhccCCCCHHHHHHHHHHHHHhhcc--cccccchhccCcHHHHHHHhcC------CCHHHHHHHHHHHHHHhc
Q 000184 1537 HQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE--EQLQKDPVTQQVIGPLIRVLGS------GIHILQQRAVKALVSIAL 1608 (1890)
Q Consensus 1537 ~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~--~~~~~~l~~~~~i~~Lv~lL~s------~~~~v~~~A~~aL~~l~~ 1608 (1890)
..++..|..-|.+.++.+|..|+.+|..|..+ ..++..+.+..+++.|++++.. .++.|+...+..+...+.
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566667778899999999999999998885 5677788888899999999863 478999999999988775
Q ss_pred cC
Q 000184 1609 TW 1610 (1890)
Q Consensus 1609 ~~ 1610 (1890)
.-
T Consensus 117 ~f 118 (148)
T 1mhq_A 117 WF 118 (148)
T ss_dssp HC
T ss_pred Hc
Confidence 43
No 146
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=30.28 E-value=2.2e+02 Score=28.98 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHccCCChhHHHHHHHHHHHHHhchh-hHhhhhhccCCchHHHHHHhh-cCCHHHHHHHHHHHHHhhccch
Q 000184 20 ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLR-SGSLAVKIQAATVLGSLCKENE 97 (1890)
Q Consensus 20 ~~v~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~-~~r~~i~~~~g~v~~Lv~lL~-~~~~~~~~~aa~~L~~L~~~~~ 97 (1890)
..+.+++++..+.+...++ -.....+.+..+..+ +++ .++..|.+.|+ ++++.++..|...|..+.+|-.
T Consensus 15 s~~~~~IekATs~~l~~~D-w~~~leicD~I~~~~~~~k-------~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG 86 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSED-WALNMEICDIINETEEGPK-------DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG 86 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCC-HHHHHHHHHHHHHSSSHHH-------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHcCCCCCCcC-HHHHHHHHHHHhCCCccHH-------HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 4688999998886544333 233334444444432 333 45667888997 5888999999999998887633
Q ss_pred --hhHHHHhcCChHH-HHHhhcC---CCHHHHHHHHHHHHHHhc
Q 000184 98 --LRVKVLLGGCIPP-LLGLLKS---SSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 98 --~~~~i~~~g~i~~-Lv~lL~~---~~~~~~~~a~~aL~~ls~ 135 (1890)
-+..+....-+.. |+.++.. .+..++..+...+...+.
T Consensus 87 ~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 87 HRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 3444555455555 6677632 245777777777776655
No 147
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=29.19 E-value=1.7e+02 Score=29.28 Aligned_cols=105 Identities=10% Similarity=0.084 Sum_probs=69.5
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhchh-hHhhhhhccCCchHHHHHHhhcCCHHHHHHHHHHHHHhhccchh--h
Q 000184 23 AQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENEL--R 99 (1890)
Q Consensus 23 ~~~~~~l~~~~~~~~~ke~A~~~L~~l~~~~~-~~r~~i~~~~g~v~~Lv~lL~~~~~~~~~~aa~~L~~L~~~~~~--~ 99 (1890)
.+++++..+.+...++ -.....+.+..+... +++ .++..+.+.|+++++.++..|...|..+.+|-.. +
T Consensus 7 d~~iekAT~~~l~~~d-w~~ileicD~I~~~~~~~k-------~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~ 78 (140)
T 3ldz_A 7 DQDVEKATSEMNTAED-WGLILDICDKVGQSRTGPK-------DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFH 78 (140)
T ss_dssp HHHHHHHTCTTSSSCC-HHHHHHHHHHHTTSTTHHH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHcCCCCCCcC-HHHHHHHHHHHHCCCcCHH-------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHH
Confidence 4777777765433233 344444555555433 332 4567788999999999999999988888766433 3
Q ss_pred HHHHhcCChHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000184 100 VKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 135 (1890)
Q Consensus 100 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ls~ 135 (1890)
..+....-+..|+.+++..++.++..+...+...+.
T Consensus 79 ~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 79 LEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 344444455667777776788888888877777665
No 148
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.93 E-value=1.2e+02 Score=33.29 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=68.1
Q ss_pred cCCchhhhhhccCCCCHHHHHHHHHHHHHhhcc--cccccchhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhccChh
Q 000184 1536 SHQAIEPLIPLLDSPAPAVQQLAAELLSHLLLE--EQLQKDPVTQQVIGPLIRVLGS-GIHILQQRAVKALVSIALTWPN 1612 (1890)
Q Consensus 1536 ~~~~i~~Lv~lL~s~~~~vq~~A~~aL~~l~~~--~~~~~~l~~~~~i~~Lv~lL~s-~~~~v~~~A~~aL~~l~~~~~~ 1612 (1890)
...++..|.+-|.+.++.+|..|+.+|..+..+ ..+...+.+...++.|+++++. .++.|+..++..+...+....+
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence 345678888889999999999999999988875 5566777778888888888854 6789999999999888754322
Q ss_pred HHHhhcChHHHHHHHhh
Q 000184 1613 EIAKEGGVTELSKIILQ 1629 (1890)
Q Consensus 1613 ~l~~~g~I~~Ll~~l~~ 1629 (1890)
. -+...|..+-+.|..
T Consensus 123 ~-~~l~~i~~~Y~~Lk~ 138 (226)
T 3zyq_A 123 E-PKYKVVQDTYQIMKV 138 (226)
T ss_dssp C-GGGHHHHHHHHHHHH
T ss_pred C-cchHHHHHHHHHHHh
Confidence 1 012234555555554
No 149
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=24.64 E-value=3.1e+02 Score=28.35 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=55.4
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCc-hhhhHhhccchHHHHHHHHcC-----CCCHhHHHHHHHHHHHhhh
Q 000184 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGS-----GNEASVRAEAAGALKSLSD 268 (1890)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~-~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~~Aa~aL~~Ls~ 268 (1890)
++..|.+-+.++++.++..|+.+|-.++.+.+ ....++.....+..|++++.. ..+..|+..+...+..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 36778888999999999999999977775544 356678888889999999863 2346788888887766554
No 150
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=23.63 E-value=2.7e+02 Score=30.13 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=54.8
Q ss_pred CHHHHHHhhcCCCHHHHHHHHHHHHHHhhcCch-hhhHhhccchHHHHHHHHcCCCCHhHHHHHHHHHHHhh
Q 000184 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS-VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLS 267 (1890)
Q Consensus 197 ~v~~Lv~lL~~~~~~v~~~a~~~L~~L~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~Aa~aL~~Ls 267 (1890)
++..|.+-|.++++.++..|+.+|-.++.+.+. ...++.....+..|++++++..+.+++..+...+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 356777888899999999999999877755443 45677778888888988877666778887777776554
Done!