Query 000187
Match_columns 1888
No_of_seqs 794 out of 3584
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 22:33:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1839 Uncharacterized protei 100.0 5E-130 1E-134 1252.0 53.1 1017 31-1124 37-1162(1236)
2 PF13236 CLU: Clustered mitoch 100.0 1.9E-41 4.2E-46 383.8 10.4 197 334-553 1-218 (221)
3 KOG1839 Uncharacterized protei 100.0 1.2E-42 2.6E-47 448.1 0.4 934 178-1317 50-1011(1236)
4 PF12807 eIF3_p135: Translatio 100.0 3.3E-30 7.1E-35 282.4 13.9 147 719-866 2-169 (169)
5 KOG1840 Kinesin light chain [C 99.9 2.9E-24 6.3E-29 267.1 33.4 284 893-1177 199-484 (508)
6 KOG1840 Kinesin light chain [C 99.9 2.3E-20 5.1E-25 232.5 31.2 251 864-1118 214-465 (508)
7 PF15044 CLU_N: Mitochondrial 99.9 3.3E-22 7.2E-27 190.7 5.9 71 43-115 2-76 (76)
8 KOG4626 O-linked N-acetylgluco 99.8 1.8E-19 4E-24 216.9 17.8 240 890-1177 249-490 (966)
9 KOG4626 O-linked N-acetylgluco 99.8 6.8E-19 1.5E-23 212.1 14.5 240 892-1177 217-456 (966)
10 TIGR00990 3a0801s09 mitochondr 99.7 9.6E-15 2.1E-19 190.6 27.7 247 890-1177 328-576 (615)
11 TIGR00990 3a0801s09 mitochondr 99.6 1.5E-13 3.3E-18 179.4 26.8 241 896-1176 163-500 (615)
12 KOG1130 Predicted G-alpha GTPa 99.6 5.2E-14 1.1E-18 164.6 18.6 276 891-1178 53-350 (639)
13 KOG1130 Predicted G-alpha GTPa 99.5 7.9E-14 1.7E-18 163.1 16.2 240 841-1094 48-308 (639)
14 KOG1126 DNA-binding cell divis 99.5 2.4E-13 5.2E-18 168.7 16.6 246 894-1177 354-625 (638)
15 PRK11788 tetratricopeptide rep 99.4 1.3E-11 2.8E-16 151.4 25.1 242 893-1172 35-278 (389)
16 TIGR02521 type_IV_pilW type IV 99.4 4.5E-11 9.8E-16 132.8 25.8 170 891-1090 29-198 (234)
17 PRK11788 tetratricopeptide rep 99.4 2.9E-11 6.3E-16 148.3 26.3 242 893-1173 69-312 (389)
18 PRK15174 Vi polysaccharide exp 99.4 4.1E-11 9E-16 157.7 27.2 247 893-1177 110-386 (656)
19 PRK11189 lipoprotein NlpI; Pro 99.4 8.8E-11 1.9E-15 140.5 25.5 226 907-1174 40-267 (296)
20 PRK15174 Vi polysaccharide exp 99.3 9.8E-11 2.1E-15 154.1 26.7 244 893-1174 76-349 (656)
21 TIGR02917 PEP_TPR_lipo putativ 99.3 1.2E-10 2.6E-15 154.9 27.2 183 892-1103 21-230 (899)
22 COG3063 PilF Tfp pilus assembl 99.3 8E-11 1.7E-15 131.8 20.4 168 890-1087 32-199 (250)
23 PRK11447 cellulose synthase su 99.3 1.1E-10 2.4E-15 162.8 25.7 241 894-1171 462-739 (1157)
24 KOG2003 TPR repeat-containing 99.3 1.1E-10 2.3E-15 137.9 21.2 216 908-1171 471-688 (840)
25 PRK11447 cellulose synthase su 99.3 3E-10 6.5E-15 158.5 29.7 172 893-1090 303-524 (1157)
26 KOG0547 Translocase of outer m 99.3 1.2E-10 2.6E-15 140.0 19.8 246 891-1176 324-570 (606)
27 KOG1155 Anaphase-promoting com 99.3 3.6E-10 7.9E-15 135.5 23.6 190 900-1122 337-526 (559)
28 TIGR02521 type_IV_pilW type IV 99.3 6E-10 1.3E-14 123.8 24.1 206 931-1172 27-232 (234)
29 PF05303 DUF727: Protein of un 99.3 4.8E-12 1E-16 128.9 6.2 63 216-278 29-105 (108)
30 TIGR02917 PEP_TPR_lipo putativ 99.3 7.7E-10 1.7E-14 147.3 28.6 235 894-1174 500-734 (899)
31 PRK12370 invasion protein regu 99.2 5.6E-10 1.2E-14 144.5 25.2 237 891-1174 256-504 (553)
32 PRK09782 bacteriophage N4 rece 99.2 4.7E-10 1E-14 151.9 25.3 236 892-1177 476-711 (987)
33 TIGR03302 OM_YfiO outer membra 99.2 7.2E-10 1.6E-14 127.3 23.4 177 892-1088 32-230 (235)
34 PRK12370 invasion protein regu 99.2 4E-10 8.6E-15 145.9 23.7 220 905-1172 316-535 (553)
35 KOG1126 DNA-binding cell divis 99.2 1.3E-10 2.9E-15 144.7 17.9 226 916-1174 335-588 (638)
36 COG3063 PilF Tfp pilus assembl 99.2 7.7E-10 1.7E-14 124.1 21.3 210 930-1175 30-239 (250)
37 PRK09782 bacteriophage N4 rece 99.2 9.5E-10 2.1E-14 149.0 25.4 232 896-1175 512-743 (987)
38 PRK04841 transcriptional regul 99.2 5E-09 1.1E-13 142.8 31.6 271 895-1177 454-765 (903)
39 KOG1173 Anaphase-promoting com 99.2 3.3E-10 7.1E-15 138.8 17.4 209 893-1174 312-520 (611)
40 PRK11189 lipoprotein NlpI; Pro 99.2 5E-09 1.1E-13 125.6 27.1 175 891-1090 62-265 (296)
41 KOG2003 TPR repeat-containing 99.2 1.2E-09 2.5E-14 129.3 21.0 238 893-1175 419-658 (840)
42 KOG0547 Translocase of outer m 99.2 2.8E-08 6.1E-13 120.2 31.8 195 896-1124 363-558 (606)
43 KOG1155 Anaphase-promoting com 99.1 1.8E-09 4E-14 129.6 20.9 240 900-1172 269-536 (559)
44 KOG2002 TPR-containing nuclear 99.1 1.2E-08 2.5E-13 131.4 25.9 254 887-1175 301-562 (1018)
45 TIGR03302 OM_YfiO outer membra 99.1 1.4E-08 3E-13 116.8 23.4 181 931-1171 29-231 (235)
46 KOG1129 TPR repeat-containing 99.0 3.2E-09 6.9E-14 122.7 16.1 235 897-1177 227-463 (478)
47 PRK10049 pgaA outer membrane p 99.0 4.8E-08 1E-12 131.3 30.0 154 899-1085 21-174 (765)
48 PRK10049 pgaA outer membrane p 99.0 4.3E-08 9.2E-13 131.8 29.2 247 893-1174 49-341 (765)
49 PF14938 SNAP: Soluble NSF att 99.0 9.7E-09 2.1E-13 122.2 19.9 247 911-1168 2-262 (282)
50 PF14938 SNAP: Soluble NSF att 99.0 2.5E-08 5.4E-13 118.8 21.8 189 893-1089 35-224 (282)
51 KOG1125 TPR repeat-containing 99.0 9.6E-09 2.1E-13 126.9 18.6 209 897-1177 289-532 (579)
52 KOG1941 Acetylcholine receptor 99.0 5.5E-08 1.2E-12 113.9 23.6 273 893-1175 83-363 (518)
53 KOG2002 TPR-containing nuclear 99.0 5.2E-08 1.1E-12 125.6 25.6 251 895-1175 272-528 (1018)
54 KOG1941 Acetylcholine receptor 99.0 2.1E-08 4.5E-13 117.4 18.3 267 894-1177 7-280 (518)
55 cd05804 StaR_like StaR_like; a 98.9 3.6E-08 7.9E-13 119.7 21.3 169 895-1088 45-213 (355)
56 KOG1173 Anaphase-promoting com 98.9 2.5E-08 5.4E-13 122.7 19.4 246 892-1176 243-488 (611)
57 PF13424 TPR_12: Tetratricopep 98.9 3.4E-09 7.3E-14 101.3 9.6 78 973-1051 1-78 (78)
58 PF13424 TPR_12: Tetratricopep 98.9 4.1E-09 8.8E-14 100.7 10.0 78 1015-1093 1-78 (78)
59 PRK04841 transcriptional regul 98.9 1.9E-07 4E-12 127.7 30.1 192 897-1093 413-605 (903)
60 PF13429 TPR_15: Tetratricopep 98.9 1.7E-09 3.7E-14 127.9 8.9 233 897-1174 12-245 (280)
61 KOG1129 TPR repeat-containing 98.9 4.9E-09 1.1E-13 121.2 11.1 171 891-1090 288-458 (478)
62 KOG0624 dsRNA-activated protei 98.9 3.1E-07 6.6E-12 107.3 24.2 250 889-1175 34-373 (504)
63 COG2956 Predicted N-acetylgluc 98.8 3.1E-07 6.7E-12 107.2 22.5 240 899-1174 41-280 (389)
64 KOG0550 Molecular chaperone (D 98.8 1.2E-07 2.6E-12 113.3 19.5 170 897-1092 173-352 (486)
65 cd05804 StaR_like StaR_like; a 98.8 4.4E-07 9.4E-12 110.4 23.1 209 893-1171 6-214 (355)
66 PRK15359 type III secretion sy 98.8 6.6E-08 1.4E-12 104.1 13.9 110 913-1049 13-122 (144)
67 PRK15179 Vi polysaccharide bio 98.8 1.6E-07 3.5E-12 123.5 20.2 170 893-1091 48-218 (694)
68 CHL00033 ycf3 photosystem I as 98.8 6.1E-08 1.3E-12 106.4 13.5 131 975-1111 33-163 (168)
69 KOG1125 TPR repeat-containing 98.8 1.1E-07 2.4E-12 117.8 16.8 182 889-1094 315-531 (579)
70 TIGR00540 hemY_coli hemY prote 98.7 1.8E-06 3.9E-11 108.2 26.9 251 893-1177 118-404 (409)
71 KOG2076 RNA polymerase III tra 98.7 2.6E-06 5.7E-11 109.9 28.1 177 892-1096 138-315 (895)
72 PRK10747 putative protoheme IX 98.7 1.1E-06 2.4E-11 109.7 24.3 238 896-1175 121-393 (398)
73 PRK15179 Vi polysaccharide bio 98.7 2.5E-07 5.5E-12 121.7 19.2 134 892-1049 85-218 (694)
74 TIGR00540 hemY_coli hemY prote 98.7 2.2E-06 4.7E-11 107.5 26.7 245 891-1171 82-363 (409)
75 CHL00033 ycf3 photosystem I as 98.7 2.2E-07 4.9E-12 102.0 15.6 122 933-1060 33-154 (168)
76 PF13429 TPR_15: Tetratricopep 98.7 1.3E-07 2.7E-12 112.1 13.5 166 896-1091 113-278 (280)
77 PRK10747 putative protoheme IX 98.7 2.4E-06 5.1E-11 106.8 24.7 244 891-1175 82-360 (398)
78 PRK10370 formate-dependent nit 98.6 7.2E-07 1.6E-11 101.2 17.4 120 906-1049 52-174 (198)
79 COG2956 Predicted N-acetylgluc 98.6 4.7E-06 1E-10 97.6 23.7 173 893-1091 107-279 (389)
80 KOG0548 Molecular co-chaperone 98.6 1.3E-06 2.9E-11 107.8 20.1 234 892-1173 223-456 (539)
81 KOG0553 TPR repeat-containing 98.6 2.8E-07 6E-12 107.5 13.5 124 889-1036 77-200 (304)
82 PRK15359 type III secretion sy 98.6 2.3E-07 5E-12 99.9 11.9 111 896-1030 27-137 (144)
83 KOG0550 Molecular chaperone (D 98.6 4.4E-07 9.5E-12 108.6 14.9 268 879-1175 35-353 (486)
84 KOG4162 Predicted calmodulin-b 98.6 9.9E-06 2.1E-10 103.4 26.3 251 889-1176 474-787 (799)
85 PRK10370 formate-dependent nit 98.6 1.3E-06 2.8E-11 99.2 16.8 120 948-1091 52-174 (198)
86 PF13525 YfiO: Outer membrane 98.6 7.9E-06 1.7E-10 93.0 22.7 170 892-1081 4-198 (203)
87 KOG0548 Molecular co-chaperone 98.5 2.6E-06 5.6E-11 105.3 19.5 198 891-1113 255-470 (539)
88 PRK02603 photosystem I assembl 98.5 3.6E-06 7.7E-11 93.0 18.7 127 972-1111 30-163 (172)
89 TIGR02552 LcrH_SycD type III s 98.5 1.6E-06 3.4E-11 90.9 15.1 103 931-1049 13-115 (135)
90 KOG1174 Anaphase-promoting com 98.5 5.3E-06 1.1E-10 99.2 20.7 250 893-1175 232-503 (564)
91 PRK15363 pathogenicity island 98.5 2.6E-06 5.6E-11 92.4 16.2 102 932-1049 32-133 (157)
92 PLN02789 farnesyltranstransfer 98.5 3E-05 6.6E-10 94.2 27.0 166 901-1103 45-220 (320)
93 PF12569 NARP1: NMDA receptor- 98.5 4.4E-05 9.6E-10 97.9 29.4 267 893-1182 4-344 (517)
94 PRK02603 photosystem I assembl 98.5 3.4E-06 7.4E-11 93.2 16.8 114 930-1056 30-150 (172)
95 PRK10866 outer membrane biogen 98.5 2.2E-05 4.8E-10 92.0 23.8 174 892-1085 31-236 (243)
96 KOG1174 Anaphase-promoting com 98.5 3.3E-06 7.3E-11 100.9 16.6 165 895-1091 302-468 (564)
97 PLN03218 maturation of RBCL 1; 98.5 3E-05 6.5E-10 106.8 28.2 166 896-1087 510-675 (1060)
98 PRK14574 hmsH outer membrane p 98.4 8.4E-06 1.8E-10 109.5 22.0 172 893-1102 34-205 (822)
99 PRK15363 pathogenicity island 98.4 4.9E-06 1.1E-10 90.3 16.0 102 890-1007 32-133 (157)
100 PLN03088 SGT1, suppressor of 98.4 2.1E-06 4.6E-11 105.7 15.0 97 894-1006 3-99 (356)
101 KOG2076 RNA polymerase III tra 98.4 2.6E-05 5.6E-10 101.1 24.0 171 893-1089 173-344 (895)
102 PLN03218 maturation of RBCL 1; 98.4 4.5E-05 9.6E-10 105.2 27.8 240 893-1172 542-783 (1060)
103 KOG1156 N-terminal acetyltrans 98.4 1.6E-05 3.4E-10 100.0 20.9 243 894-1174 8-250 (700)
104 PRK14720 transcript cleavage f 98.4 8.2E-06 1.8E-10 108.7 19.6 220 927-1175 23-255 (906)
105 PF09976 TPR_21: Tetratricopep 98.4 1.9E-05 4E-10 85.0 19.0 137 891-1046 9-145 (145)
106 TIGR02795 tol_pal_ybgF tol-pal 98.4 5.4E-06 1.2E-10 84.1 14.1 104 936-1049 3-106 (119)
107 TIGR02552 LcrH_SycD type III s 98.4 5.9E-06 1.3E-10 86.6 14.1 102 973-1090 13-114 (135)
108 TIGR02795 tol_pal_ybgF tol-pal 98.3 8.9E-06 1.9E-10 82.5 14.6 104 893-1006 2-105 (119)
109 PRK14574 hmsH outer membrane p 98.3 9.3E-05 2E-09 99.7 27.4 97 893-1006 102-198 (822)
110 PRK14720 transcript cleavage f 98.3 2E-05 4.3E-10 105.2 20.4 142 889-1050 27-180 (906)
111 KOG0495 HAT repeat protein [RN 98.3 2.7E-05 5.8E-10 97.4 19.7 203 936-1180 652-854 (913)
112 KOG1585 Protein required for f 98.3 0.00052 1.1E-08 78.4 27.4 227 928-1166 24-250 (308)
113 COG5010 TadD Flp pilus assembl 98.3 1.3E-05 2.8E-10 92.5 14.9 156 897-1084 70-225 (257)
114 PLN03081 pentatricopeptide (PP 98.3 6.1E-05 1.3E-09 100.8 23.9 239 894-1172 291-557 (697)
115 PLN03088 SGT1, suppressor of 98.3 9.2E-06 2E-10 100.2 14.7 96 938-1049 5-100 (356)
116 KOG2376 Signal recognition par 98.2 0.00037 8.1E-09 87.3 27.9 159 897-1070 83-271 (652)
117 PLN03081 pentatricopeptide (PP 98.2 5.3E-05 1.1E-09 101.4 22.0 196 937-1168 292-487 (697)
118 PF09976 TPR_21: Tetratricopep 98.2 6.8E-05 1.5E-09 80.7 18.4 123 947-1088 23-145 (145)
119 KOG0553 TPR repeat-containing 98.2 1.3E-05 2.7E-10 94.0 13.1 122 933-1078 79-200 (304)
120 KOG2376 Signal recognition par 98.2 0.00012 2.6E-09 91.5 21.9 217 894-1172 13-253 (652)
121 PLN02789 farnesyltranstransfer 98.2 9.4E-05 2E-09 90.0 20.7 190 945-1171 47-249 (320)
122 KOG3617 WD40 and TPR repeat-co 98.2 0.00049 1.1E-08 87.7 26.4 132 911-1047 837-995 (1416)
123 KOG1128 Uncharacterized conser 98.1 5.1E-05 1.1E-09 96.7 18.1 165 900-1095 457-621 (777)
124 COG5010 TadD Flp pilus assembl 98.1 0.00011 2.3E-09 85.0 18.8 145 931-1105 63-207 (257)
125 PF12688 TPR_5: Tetratrico pep 98.1 4.1E-05 9E-10 80.3 14.1 102 936-1047 2-103 (120)
126 KOG1127 TPR repeat-containing 98.1 9.1E-05 2E-09 96.4 19.5 232 908-1177 473-705 (1238)
127 PRK10153 DNA-binding transcrip 98.1 5.3E-05 1.2E-09 97.5 17.3 145 888-1049 334-483 (517)
128 PRK10866 outer membrane biogen 98.1 0.00049 1.1E-08 80.8 23.8 90 934-1033 31-120 (243)
129 COG4783 Putative Zn-dependent 98.1 0.00025 5.4E-09 87.7 21.8 114 899-1036 312-425 (484)
130 cd00189 TPR Tetratricopeptide 98.1 2.1E-05 4.6E-10 73.3 10.0 96 937-1048 2-97 (100)
131 KOG1585 Protein required for f 98.1 0.00022 4.8E-09 81.3 19.4 189 893-1090 31-219 (308)
132 PF13525 YfiO: Outer membrane 98.0 0.00039 8.4E-09 79.3 21.0 143 934-1091 4-171 (203)
133 KOG0624 dsRNA-activated protei 98.0 0.0004 8.7E-09 82.0 21.0 144 930-1090 33-184 (504)
134 cd00189 TPR Tetratricopeptide 98.0 3.8E-05 8.3E-10 71.6 10.4 96 895-1006 2-97 (100)
135 PLN03077 Protein ECB2; Provisi 98.0 0.00083 1.8E-08 92.2 27.5 28 1144-1171 692-719 (857)
136 KOG0495 HAT repeat protein [RN 98.0 0.00062 1.3E-08 85.8 22.3 228 905-1181 562-791 (913)
137 KOG0543 FKBP-type peptidyl-pro 98.0 9.5E-05 2.1E-09 89.9 14.9 126 891-1032 206-338 (397)
138 PF13414 TPR_11: TPR repeat; P 98.0 3.1E-05 6.6E-10 72.2 8.5 65 934-1006 2-67 (69)
139 PLN03077 Protein ECB2; Provisi 98.0 0.00064 1.4E-08 93.3 24.7 97 1062-1169 555-651 (857)
140 KOG4162 Predicted calmodulin-b 97.9 0.0036 7.8E-08 80.9 28.5 179 895-1092 395-578 (799)
141 PF13414 TPR_11: TPR repeat; P 97.9 4.9E-05 1.1E-09 70.8 8.8 65 976-1048 2-67 (69)
142 PRK10803 tol-pal system protei 97.9 0.00019 4.1E-09 85.1 15.7 104 936-1049 143-247 (263)
143 KOG0543 FKBP-type peptidyl-pro 97.9 0.00013 2.8E-09 88.8 14.0 106 936-1049 209-321 (397)
144 KOG1156 N-terminal acetyltrans 97.9 0.0019 4.1E-08 82.0 24.3 132 894-1049 42-173 (700)
145 KOG2300 Uncharacterized conser 97.9 0.0025 5.5E-08 78.4 24.6 251 903-1168 285-552 (629)
146 KOG3617 WD40 and TPR repeat-co 97.9 0.00068 1.5E-08 86.6 20.0 161 900-1089 807-995 (1416)
147 PRK11906 transcriptional regul 97.9 0.00059 1.3E-08 84.9 19.5 162 895-1085 257-431 (458)
148 PF12688 TPR_5: Tetratrico pep 97.8 0.0002 4.4E-09 75.2 13.2 102 978-1089 2-103 (120)
149 PF12895 Apc3: Anaphase-promot 97.8 6.3E-05 1.4E-09 73.3 8.8 84 905-1003 1-84 (84)
150 COG4783 Putative Zn-dependent 97.8 0.0055 1.2E-07 76.3 26.7 134 932-1089 303-436 (484)
151 PRK10803 tol-pal system protei 97.8 0.00025 5.5E-09 84.0 14.8 104 978-1091 143-247 (263)
152 COG0457 NrfG FOG: TPR repeat [ 97.8 0.0033 7.2E-08 66.8 22.0 173 893-1091 59-232 (291)
153 KOG3785 Uncharacterized conser 97.8 0.0004 8.7E-09 82.1 15.7 161 902-1085 31-209 (557)
154 COG3071 HemY Uncharacterized e 97.8 0.012 2.7E-07 71.7 28.6 173 891-1089 82-291 (400)
155 KOG1127 TPR repeat-containing 97.8 0.0072 1.6E-07 79.6 28.1 219 937-1177 852-1072(1238)
156 PF12895 Apc3: Anaphase-promot 97.8 0.0001 2.3E-09 71.8 9.0 83 948-1045 2-84 (84)
157 KOG4555 TPR repeat-containing 97.7 0.0012 2.5E-08 69.3 15.6 103 892-1006 42-144 (175)
158 KOG1128 Uncharacterized conser 97.6 0.00035 7.5E-09 89.4 13.2 126 942-1090 457-582 (777)
159 KOG3060 Uncharacterized conser 97.6 0.015 3.2E-07 67.4 24.9 160 900-1091 59-221 (289)
160 COG2909 MalT ATP-dependent tra 97.6 0.044 9.5E-07 72.5 31.5 262 897-1169 419-685 (894)
161 PRK10153 DNA-binding transcrip 97.6 0.00095 2.1E-08 86.2 16.6 136 938-1101 342-488 (517)
162 KOG4340 Uncharacterized conser 97.6 0.00083 1.8E-08 78.2 14.1 162 904-1089 21-206 (459)
163 KOG3060 Uncharacterized conser 97.6 0.011 2.4E-07 68.5 22.8 156 907-1088 26-181 (289)
164 PF13432 TPR_16: Tetratricopep 97.5 0.00024 5.2E-09 65.6 7.5 60 897-964 1-60 (65)
165 KOG1070 rRNA processing protei 97.5 0.0045 9.7E-08 83.7 20.8 164 901-1090 1466-1629(1710)
166 KOG2047 mRNA splicing factor [ 97.5 0.22 4.8E-06 63.9 33.9 163 871-1049 369-541 (835)
167 COG4105 ComL DNA uptake lipopr 97.5 0.017 3.7E-07 67.5 22.9 174 893-1083 34-226 (254)
168 KOG3616 Selective LIM binding 97.5 0.018 4E-07 73.0 24.3 280 885-1174 653-1026(1636)
169 KOG4555 TPR repeat-containing 97.5 0.0035 7.6E-08 65.8 15.4 99 938-1048 46-144 (175)
170 COG4785 NlpI Lipoprotein NlpI, 97.5 0.0054 1.2E-07 69.3 17.9 205 931-1171 61-265 (297)
171 PF08631 SPO22: Meiosis protei 97.4 0.016 3.5E-07 69.4 23.2 141 903-1048 3-150 (278)
172 PF13432 TPR_16: Tetratricopep 97.4 0.00045 9.8E-09 63.7 7.5 60 939-1006 1-60 (65)
173 KOG3785 Uncharacterized conser 97.4 0.031 6.7E-07 66.8 23.9 129 898-1043 62-209 (557)
174 PF12569 NARP1: NMDA receptor- 97.4 0.0068 1.5E-07 78.3 20.5 147 888-1054 189-340 (517)
175 COG1729 Uncharacterized protei 97.4 0.0014 3E-08 76.8 12.8 105 892-1006 140-244 (262)
176 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00058 1.3E-08 84.9 10.0 72 972-1048 70-141 (453)
177 KOG1586 Protein required for f 97.4 0.016 3.5E-07 66.4 20.2 140 941-1088 40-181 (288)
178 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.003 6.4E-08 78.9 15.9 116 901-1043 177-292 (395)
179 KOG2300 Uncharacterized conser 97.3 0.0093 2E-07 73.7 19.3 199 900-1115 330-537 (629)
180 PF13374 TPR_10: Tetratricopep 97.3 0.0003 6.6E-09 58.8 4.9 42 976-1017 1-42 (42)
181 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00068 1.5E-08 84.3 9.8 72 930-1006 70-141 (453)
182 COG1729 Uncharacterized protei 97.3 0.0032 7E-08 73.9 13.7 102 938-1049 144-245 (262)
183 COG0457 NrfG FOG: TPR repeat [ 97.2 0.021 4.5E-07 60.8 18.8 172 892-1091 94-266 (291)
184 PF13374 TPR_10: Tetratricopep 97.2 0.00051 1.1E-08 57.4 5.0 42 934-975 1-42 (42)
185 PF04733 Coatomer_E: Coatomer 97.2 0.0025 5.4E-08 76.8 12.8 168 897-1106 106-276 (290)
186 COG5159 RPN6 26S proteasome re 97.2 0.024 5.3E-07 66.2 19.6 259 897-1170 7-312 (421)
187 KOG3616 Selective LIM binding 97.2 0.2 4.3E-06 64.2 28.6 193 978-1173 662-912 (1636)
188 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.0046 1E-07 77.2 14.9 118 941-1085 175-292 (395)
189 PRK15331 chaperone protein Sic 97.2 0.0024 5.2E-08 70.1 11.0 101 889-1005 33-133 (165)
190 KOG1586 Protein required for f 97.2 0.026 5.6E-07 64.7 19.2 176 896-1082 37-216 (288)
191 PF13512 TPR_18: Tetratricopep 97.2 0.0049 1.1E-07 66.4 12.8 104 893-1006 10-128 (142)
192 COG3071 HemY Uncharacterized e 97.1 0.036 7.9E-07 67.8 20.8 182 894-1092 154-392 (400)
193 PRK11906 transcriptional regul 97.1 0.0097 2.1E-07 74.5 16.0 145 939-1109 259-415 (458)
194 COG4235 Cytochrome c biogenesi 97.0 0.014 3.1E-07 69.4 16.3 120 931-1070 152-274 (287)
195 PF10345 Cohesin_load: Cohesin 97.0 0.39 8.5E-06 63.9 31.7 154 933-1094 57-212 (608)
196 PRK15331 chaperone protein Sic 97.0 0.0036 7.7E-08 68.9 10.5 102 931-1048 33-134 (165)
197 PF12968 DUF3856: Domain of Un 97.0 0.03 6.5E-07 58.2 16.0 122 933-1055 5-136 (144)
198 KOG2047 mRNA splicing factor [ 97.0 0.019 4.2E-07 73.0 17.6 242 901-1170 355-613 (835)
199 COG4700 Uncharacterized protei 96.9 0.091 2E-06 58.7 20.0 150 936-1110 90-239 (251)
200 KOG1070 rRNA processing protei 96.9 0.019 4.2E-07 77.9 17.6 215 931-1177 1454-1668(1710)
201 KOG4234 TPR repeat-containing 96.9 0.0082 1.8E-07 67.2 11.8 99 981-1090 99-197 (271)
202 KOG4234 TPR repeat-containing 96.9 0.012 2.5E-07 66.0 12.9 106 890-1006 92-197 (271)
203 COG2909 MalT ATP-dependent tra 96.8 0.11 2.4E-06 69.0 22.9 190 893-1093 458-650 (894)
204 KOG4340 Uncharacterized conser 96.8 0.048 1E-06 64.1 17.5 173 896-1084 47-264 (459)
205 KOG4648 Uncharacterized conser 96.8 0.0062 1.3E-07 72.2 10.5 98 893-1006 97-194 (536)
206 PF12968 DUF3856: Domain of Un 96.8 0.065 1.4E-06 55.9 16.4 120 893-1013 9-136 (144)
207 COG4785 NlpI Lipoprotein NlpI, 96.7 0.023 4.9E-07 64.5 13.9 170 892-1088 64-264 (297)
208 PF13512 TPR_18: Tetratricopep 96.7 0.02 4.4E-07 61.8 13.0 105 935-1049 10-129 (142)
209 PF10300 DUF3808: Protein of u 96.7 0.059 1.3E-06 69.4 19.5 177 904-1100 199-386 (468)
210 COG4235 Cytochrome c biogenesi 96.7 0.018 3.9E-07 68.5 13.6 117 885-1021 148-267 (287)
211 KOG2471 TPR repeat-containing 96.7 0.046 9.9E-07 67.8 17.0 114 894-1008 241-366 (696)
212 PF10345 Cohesin_load: Cohesin 96.6 0.54 1.2E-05 62.7 28.2 274 893-1172 301-606 (608)
213 PF04184 ST7: ST7 protein; In 96.6 0.13 2.8E-06 64.8 20.4 128 901-1044 176-320 (539)
214 PF09986 DUF2225: Uncharacteri 96.6 0.023 4.9E-07 65.8 13.1 99 990-1089 90-193 (214)
215 PF13371 TPR_9: Tetratricopept 96.6 0.01 2.2E-07 55.9 8.5 58 941-1006 1-58 (73)
216 COG4105 ComL DNA uptake lipopr 96.6 0.2 4.3E-06 58.9 20.6 141 935-1090 34-196 (254)
217 PF13371 TPR_9: Tetratricopept 96.6 0.0086 1.9E-07 56.3 8.0 59 983-1049 1-59 (73)
218 KOG4642 Chaperone-dependent E3 96.6 0.01 2.2E-07 68.1 9.8 106 889-1010 6-111 (284)
219 PF09986 DUF2225: Uncharacteri 96.5 0.024 5.2E-07 65.6 12.8 101 905-1006 89-194 (214)
220 KOG1463 26S proteasome regulat 96.4 0.19 4.2E-06 60.5 19.0 261 894-1171 49-315 (411)
221 PF14559 TPR_19: Tetratricopep 96.3 0.0093 2E-07 55.3 6.6 54 903-964 1-54 (68)
222 PF14559 TPR_19: Tetratricopep 96.2 0.014 3E-07 54.1 6.8 54 945-1006 1-54 (68)
223 KOG4648 Uncharacterized conser 96.2 0.018 3.8E-07 68.6 9.0 95 939-1049 101-195 (536)
224 PF10300 DUF3808: Protein of u 96.1 0.14 3.1E-06 65.9 18.1 133 907-1058 247-386 (468)
225 COG4700 Uncharacterized protei 96.1 0.1 2.3E-06 58.2 14.0 133 895-1049 91-223 (251)
226 KOG2796 Uncharacterized conser 96.1 0.1 2.3E-06 60.7 14.4 158 893-1072 177-334 (366)
227 KOG2610 Uncharacterized conser 96.0 0.16 3.4E-06 60.9 15.6 167 896-1086 106-272 (491)
228 PF13281 DUF4071: Domain of un 96.0 0.64 1.4E-05 57.9 21.7 150 908-1077 114-275 (374)
229 KOG3081 Vesicle coat complex C 96.0 0.5 1.1E-05 55.7 19.4 172 895-1105 110-281 (299)
230 PF04184 ST7: ST7 protein; In 95.8 0.14 3.1E-06 64.5 15.3 131 940-1086 173-320 (539)
231 PF03704 BTAD: Bacterial trans 95.8 0.21 4.5E-06 53.7 14.7 113 894-1014 7-133 (146)
232 PF10602 RPN7: 26S proteasome 95.8 0.19 4.2E-06 56.6 14.9 126 957-1091 18-143 (177)
233 KOG3965 Uncharacterized conser 95.7 0.019 4.1E-07 61.2 6.2 55 216-270 60-128 (160)
234 KOG1464 COP9 signalosome, subu 95.7 0.17 3.6E-06 59.1 14.1 218 949-1177 41-265 (440)
235 KOG2796 Uncharacterized conser 95.7 0.68 1.5E-05 54.3 18.9 139 936-1091 178-316 (366)
236 KOG1915 Cell cycle control pro 95.7 3.8 8.3E-05 51.6 26.1 246 896-1171 76-350 (677)
237 PF04733 Coatomer_E: Coatomer 95.7 0.095 2.1E-06 63.4 12.9 134 899-1061 137-273 (290)
238 KOG4642 Chaperone-dependent E3 95.6 0.026 5.5E-07 65.0 7.3 98 981-1094 14-111 (284)
239 KOG2041 WD40 repeat protein [G 95.6 3.3 7.1E-05 53.9 25.6 126 931-1087 792-936 (1189)
240 KOG2471 TPR repeat-containing 95.6 0.052 1.1E-06 67.3 10.0 131 934-1073 239-381 (696)
241 PF02259 FAT: FAT domain; Int 95.6 1.2 2.6E-05 54.4 22.2 253 894-1177 30-292 (352)
242 PF03704 BTAD: Bacterial trans 95.5 0.29 6.2E-06 52.6 14.4 112 980-1099 9-134 (146)
243 PF10602 RPN7: 26S proteasome 95.4 0.32 6.8E-06 54.8 14.8 128 913-1049 16-143 (177)
244 KOG3081 Vesicle coat complex C 95.4 1.3 2.8E-05 52.4 19.7 145 936-1116 109-257 (299)
245 PF08631 SPO22: Meiosis protei 95.2 2.5 5.5E-05 50.8 22.8 80 889-969 31-117 (278)
246 KOG0551 Hsp90 co-chaperone CNS 95.1 0.11 2.4E-06 62.3 10.4 104 892-1007 80-183 (390)
247 COG3898 Uncharacterized membra 95.0 3.6 7.9E-05 50.8 22.7 162 900-1089 127-291 (531)
248 COG2976 Uncharacterized protei 95.0 0.8 1.7E-05 52.0 16.1 100 978-1091 90-189 (207)
249 KOG0545 Aryl-hydrocarbon recep 95.0 0.24 5.3E-06 57.4 12.2 106 893-1006 178-293 (329)
250 KOG1464 COP9 signalosome, subu 94.9 0.96 2.1E-05 53.1 16.7 206 894-1109 66-276 (440)
251 PF12862 Apc5: Anaphase-promot 94.7 0.31 6.7E-06 49.1 11.1 84 1029-1114 8-92 (94)
252 PF02259 FAT: FAT domain; Int 94.6 4.4 9.6E-05 49.5 23.1 132 889-1032 142-305 (352)
253 PF04910 Tcf25: Transcriptiona 94.5 1.9 4.1E-05 54.0 19.6 153 930-1092 35-224 (360)
254 PF12862 Apc5: Anaphase-promot 94.5 0.45 9.8E-06 47.9 11.7 82 987-1070 8-90 (94)
255 KOG0545 Aryl-hydrocarbon recep 94.3 0.35 7.6E-06 56.1 11.6 105 936-1048 179-293 (329)
256 KOG1915 Cell cycle control pro 94.2 5.8 0.00013 50.1 22.0 159 904-1089 377-535 (677)
257 COG5159 RPN6 26S proteasome re 94.2 1.7 3.7E-05 51.5 16.7 226 940-1176 8-239 (421)
258 PF11817 Foie-gras_1: Foie gra 94.1 7.4 0.00016 46.2 22.7 183 898-1084 15-241 (247)
259 COG0790 FOG: TPR repeat, SEL1 93.9 1.8 4E-05 51.9 17.3 144 894-1075 74-236 (292)
260 PF13176 TPR_7: Tetratricopept 93.8 0.12 2.6E-06 42.8 5.0 31 937-967 1-31 (36)
261 COG3118 Thioredoxin domain-con 93.8 1.3 2.9E-05 53.1 15.3 145 848-1005 87-264 (304)
262 PF13176 TPR_7: Tetratricopept 93.7 0.13 2.8E-06 42.6 4.9 31 979-1009 1-31 (36)
263 KOG0551 Hsp90 co-chaperone CNS 93.6 0.5 1.1E-05 57.0 11.4 107 932-1050 78-184 (390)
264 COG2976 Uncharacterized protei 93.6 2.4 5.2E-05 48.3 16.0 100 936-1049 90-189 (207)
265 PF05843 Suf: Suppressor of fo 93.5 0.68 1.5E-05 55.8 12.9 134 937-1091 3-137 (280)
266 PF12739 TRAPPC-Trs85: ER-Golg 93.5 5.5 0.00012 50.8 21.4 115 928-1048 203-329 (414)
267 PF00515 TPR_1: Tetratricopept 93.3 0.16 3.4E-06 40.9 4.8 30 977-1006 1-30 (34)
268 KOG2041 WD40 repeat protein [G 93.3 3.8 8.3E-05 53.3 18.7 86 972-1085 791-876 (1189)
269 PF00515 TPR_1: Tetratricopept 93.2 0.16 3.5E-06 40.8 4.8 30 935-964 1-30 (34)
270 PF06552 TOM20_plant: Plant sp 93.2 0.65 1.4E-05 52.2 10.9 79 931-1010 21-106 (186)
271 KOG2610 Uncharacterized conser 93.1 0.64 1.4E-05 56.0 11.2 130 901-1046 145-274 (491)
272 KOG0985 Vesicle coat protein c 92.8 8 0.00017 52.5 21.1 183 935-1173 1104-1309(1666)
273 COG0790 FOG: TPR repeat, SEL1 92.6 3.8 8.3E-05 49.1 17.3 149 904-1089 52-219 (292)
274 PF07719 TPR_2: Tetratricopept 92.6 0.23 5E-06 39.6 4.8 31 935-965 1-31 (34)
275 PF08626 TRAPPC9-Trs120: Trans 92.4 8.2 0.00018 55.6 22.8 157 891-1051 240-477 (1185)
276 PF00244 14-3-3: 14-3-3 protei 92.1 11 0.00024 44.6 19.8 186 895-1096 3-204 (236)
277 KOG1550 Extracellular protein 92.0 10 0.00023 50.2 21.7 150 908-1090 227-393 (552)
278 PF07719 TPR_2: Tetratricopept 92.0 0.3 6.4E-06 39.0 4.7 32 1143-1174 1-32 (34)
279 PF13428 TPR_14: Tetratricopep 91.7 0.37 8.1E-06 41.5 5.4 42 936-985 2-43 (44)
280 KOG1550 Extracellular protein 91.6 4.7 0.0001 53.4 17.9 120 906-1048 262-393 (552)
281 KOG0376 Serine-threonine phosp 91.6 0.15 3.3E-06 64.0 3.9 98 893-1006 4-101 (476)
282 PF13181 TPR_8: Tetratricopept 91.3 0.39 8.4E-06 38.5 4.7 31 935-965 1-31 (34)
283 PF13181 TPR_8: Tetratricopept 91.2 0.42 9E-06 38.3 4.8 31 1144-1174 2-32 (34)
284 KOG2053 Mitochondrial inherita 91.1 15 0.00033 49.7 21.1 119 904-1050 20-138 (932)
285 PF13431 TPR_17: Tetratricopep 91.0 0.21 4.4E-06 41.1 2.9 32 958-997 2-33 (34)
286 PF13281 DUF4071: Domain of un 90.8 24 0.00051 44.6 21.6 170 901-1090 149-334 (374)
287 KOG4322 Anaphase-promoting com 90.8 6.5 0.00014 49.3 16.4 218 942-1172 238-471 (482)
288 KOG1463 26S proteasome regulat 90.7 6.3 0.00014 48.2 15.7 226 942-1177 11-243 (411)
289 KOG1308 Hsp70-interacting prot 90.6 0.27 5.9E-06 59.5 4.5 98 893-1006 114-211 (377)
290 PF12739 TRAPPC-Trs85: ER-Golg 90.4 13 0.00029 47.5 19.6 176 895-1092 210-401 (414)
291 PF13431 TPR_17: Tetratricopep 90.3 0.25 5.5E-06 40.6 2.8 32 916-955 2-33 (34)
292 PF13428 TPR_14: Tetratricopep 90.1 0.61 1.3E-05 40.2 5.2 41 895-943 3-43 (44)
293 KOG4322 Anaphase-promoting com 90.1 8.9 0.00019 48.2 16.7 183 928-1117 266-453 (482)
294 PF08626 TRAPPC9-Trs120: Trans 89.9 10 0.00022 54.8 19.9 229 935-1173 242-553 (1185)
295 PF06552 TOM20_plant: Plant sp 89.9 1.7 3.7E-05 49.0 9.7 79 973-1052 21-106 (186)
296 KOG4814 Uncharacterized conser 89.8 18 0.00039 47.4 19.4 105 893-1007 354-458 (872)
297 KOG1914 mRNA cleavage and poly 88.9 16 0.00034 47.3 17.8 174 893-1089 286-463 (656)
298 cd01807 GDX_N ubiquitin-like d 88.8 0.62 1.3E-05 44.8 4.7 70 26-98 1-73 (74)
299 KOG1538 Uncharacterized conser 88.7 20 0.00042 46.9 18.4 124 939-1085 636-771 (1081)
300 cd01802 AN1_N ubiquitin-like d 88.4 0.82 1.8E-05 47.2 5.6 71 23-96 25-98 (103)
301 PTZ00044 ubiquitin; Provisiona 88.4 0.68 1.5E-05 44.5 4.7 68 26-96 1-71 (76)
302 KOG2561 Adaptor protein NUB1, 88.3 8.1 0.00017 48.5 14.5 114 937-1052 165-300 (568)
303 PF05843 Suf: Suppressor of fo 88.0 3.3 7.1E-05 50.0 11.3 128 901-1049 9-137 (280)
304 COG3118 Thioredoxin domain-con 87.8 9.9 0.00022 46.0 14.6 131 940-1084 139-295 (304)
305 KOG2053 Mitochondrial inherita 87.8 85 0.0019 43.1 24.2 163 899-1086 49-215 (932)
306 KOG4814 Uncharacterized conser 87.5 39 0.00084 44.5 20.1 106 978-1093 355-460 (872)
307 KOG0376 Serine-threonine phosp 87.4 0.77 1.7E-05 58.0 5.5 94 940-1049 9-102 (476)
308 KOG4563 Cell cycle-regulated h 87.3 2.7 5.9E-05 51.6 9.7 67 890-956 38-104 (400)
309 PF04910 Tcf25: Transcriptiona 87.1 25 0.00055 44.2 18.5 148 893-1049 40-223 (360)
310 PF11207 DUF2989: Protein of u 87.0 7.6 0.00016 44.7 12.6 67 970-1041 134-200 (203)
311 cd01798 parkin_N amino-termina 86.9 0.9 2E-05 43.1 4.5 66 28-96 1-69 (70)
312 KOG4014 Uncharacterized conser 86.8 11 0.00024 42.6 13.2 156 907-1094 41-237 (248)
313 PF11817 Foie-gras_1: Foie gra 86.4 7.2 0.00016 46.3 12.8 91 909-1003 154-244 (247)
314 KOG0985 Vesicle coat protein c 86.4 64 0.0014 44.6 21.6 165 894-1091 1105-1309(1666)
315 KOG0307 Vesicle coat complex C 86.3 4.5 9.7E-05 55.5 11.9 25 1142-1166 664-688 (1049)
316 PF15015 NYD-SP12_N: Spermatog 86.2 7.8 0.00017 48.4 12.8 108 897-1012 180-297 (569)
317 KOG3783 Uncharacterized conser 86.2 44 0.00096 43.5 19.7 186 892-1091 302-521 (546)
318 PF08424 NRDE-2: NRDE-2, neces 86.1 58 0.0013 40.3 20.8 125 953-1090 49-183 (321)
319 COG3898 Uncharacterized membra 86.1 23 0.00051 44.2 16.5 159 901-1088 196-356 (531)
320 PF10579 Rapsyn_N: Rapsyn N-te 85.9 5.5 0.00012 39.3 9.2 72 892-968 5-76 (80)
321 cd01810 ISG15_repeat2 ISG15 ub 85.9 1.1 2.3E-05 43.2 4.5 66 28-96 1-69 (74)
322 cd01808 hPLIC_N Ubiquitin-like 85.6 1.4 2.9E-05 42.1 5.0 65 26-95 1-69 (71)
323 KOG2581 26S proteasome regulat 85.5 20 0.00044 44.9 15.7 143 901-1049 134-277 (493)
324 KOG1538 Uncharacterized conser 85.5 41 0.00089 44.2 18.7 67 1028-1117 782-848 (1081)
325 KOG2581 26S proteasome regulat 85.3 28 0.0006 43.8 16.8 143 1026-1175 133-279 (493)
326 PF09670 Cas_Cas02710: CRISPR- 85.1 23 0.0005 44.8 17.0 144 891-1052 129-274 (379)
327 PF10579 Rapsyn_N: Rapsyn N-te 84.7 7.4 0.00016 38.4 9.4 68 1023-1095 10-77 (80)
328 PF04781 DUF627: Protein of un 84.2 5.9 0.00013 41.5 9.1 102 899-1006 2-107 (111)
329 PF07145 PAM2: Ataxin-2 C-term 84.1 0.57 1.2E-05 33.4 1.2 13 1690-1702 5-17 (18)
330 PF08424 NRDE-2: NRDE-2, neces 84.1 50 0.0011 40.9 18.9 128 909-1049 47-184 (321)
331 KOG0890 Protein kinase of the 83.7 1.6E+02 0.0035 44.6 25.3 112 888-1009 1665-1787(2382)
332 KOG0686 COP9 signalosome, subu 83.6 19 0.00041 45.2 14.5 104 976-1087 149-255 (466)
333 cd01797 NIRF_N amino-terminal 83.6 1.7 3.6E-05 42.6 4.8 68 26-96 1-73 (78)
334 cd01792 ISG15_repeat1 ISG15 ub 83.6 2.3 4.9E-05 41.7 5.7 70 26-96 3-75 (80)
335 cd01806 Nedd8 Nebb8-like ubiq 83.6 1.8 3.9E-05 41.3 4.9 68 26-96 1-71 (76)
336 smart00101 14_3_3 14-3-3 homol 83.0 1.1E+02 0.0025 36.6 24.1 188 895-1096 3-206 (244)
337 KOG0508 Ankyrin repeat protein 82.7 1.5 3.3E-05 54.8 5.0 132 896-1030 248-390 (615)
338 cd01804 midnolin_N Ubiquitin-l 82.6 2.8 6.1E-05 41.0 5.8 68 26-97 2-72 (78)
339 KOG0508 Ankyrin repeat protein 81.6 1.9 4.1E-05 54.1 5.2 75 1000-1074 318-392 (615)
340 PF10952 DUF2753: Protein of u 81.6 14 0.0003 39.4 10.6 73 938-1010 4-83 (140)
341 cd01809 Scythe_N Ubiquitin-lik 81.2 2.3 4.9E-05 40.2 4.6 68 26-96 1-71 (72)
342 KOG4507 Uncharacterized conser 81.0 15 0.00032 47.6 12.5 98 978-1089 213-311 (886)
343 COG5187 RPN7 26S proteasome re 80.8 39 0.00085 40.8 15.1 132 910-1050 92-223 (412)
344 KOG1920 IkappaB kinase complex 80.6 65 0.0014 45.4 19.0 100 988-1088 919-1026(1265)
345 KOG2561 Adaptor protein NUB1, 80.6 61 0.0013 41.2 17.1 118 892-1010 162-300 (568)
346 KOG2114 Vacuolar assembly/sort 80.3 29 0.00063 47.0 15.3 36 930-965 363-398 (933)
347 cd01794 DC_UbP_C dendritic cel 80.1 2.5 5.5E-05 40.5 4.5 64 29-95 2-68 (70)
348 COG5187 RPN7 26S proteasome re 80.0 73 0.0016 38.6 16.9 132 950-1092 90-223 (412)
349 KOG4014 Uncharacterized conser 79.5 15 0.00032 41.7 10.6 131 892-1052 67-237 (248)
350 KOG0687 26S proteasome regulat 78.8 41 0.00088 41.4 14.6 130 912-1050 83-212 (393)
351 cd01793 Fubi Fubi ubiquitin-li 78.4 3.5 7.5E-05 39.7 4.9 65 26-96 1-69 (74)
352 KOG1924 RhoA GTPase effector D 78.3 5.7 0.00012 52.5 8.0 21 1592-1612 547-567 (1102)
353 PF04781 DUF627: Protein of un 78.3 27 0.00059 36.7 11.5 101 983-1089 2-106 (111)
354 KOG1308 Hsp70-interacting prot 78.2 0.82 1.8E-05 55.6 0.6 89 944-1048 123-211 (377)
355 PF13174 TPR_6: Tetratricopept 78.1 3.1 6.6E-05 32.8 3.7 28 979-1006 2-29 (33)
356 PF10516 SHNi-TPR: SHNi-TPR; 77.7 4.4 9.4E-05 34.6 4.6 36 1062-1097 2-37 (38)
357 PF15015 NYD-SP12_N: Spermatog 77.6 36 0.00079 42.9 14.0 100 942-1049 183-292 (569)
358 smart00028 TPR Tetratricopepti 77.5 3.2 6.9E-05 30.7 3.6 29 978-1006 2-30 (34)
359 PF13174 TPR_6: Tetratricopept 77.1 3.3 7.1E-05 32.6 3.7 28 937-964 2-29 (33)
360 cd01805 RAD23_N Ubiquitin-like 77.0 4.2 9.1E-05 39.1 5.0 68 26-95 1-72 (77)
361 cd01812 BAG1_N Ubiquitin-like 76.7 4 8.7E-05 38.5 4.8 67 26-97 1-71 (71)
362 PF10516 SHNi-TPR: SHNi-TPR; 76.2 5.2 0.00011 34.2 4.6 35 936-970 2-36 (38)
363 KOG1914 mRNA cleavage and poly 76.0 2.4E+02 0.0052 37.2 20.7 215 935-1174 286-503 (656)
364 PF07079 DUF1347: Protein of u 76.0 2.5E+02 0.0054 36.4 27.2 135 891-1044 377-520 (549)
365 cd09244 BRO1_Rhophilin Protein 75.6 1.5E+02 0.0032 37.5 19.0 41 886-926 99-148 (350)
366 smart00028 TPR Tetratricopepti 75.6 3.2 6.9E-05 30.7 3.1 29 936-964 2-30 (34)
367 cd01803 Ubiquitin Ubiquitin. U 75.3 4.6 9.9E-05 38.5 4.8 68 26-96 1-71 (76)
368 PF09613 HrpB1_HrpK: Bacterial 75.2 27 0.00057 39.1 11.1 91 888-994 5-95 (160)
369 PF04190 DUF410: Protein of un 75.2 2E+02 0.0043 34.8 25.1 158 905-1090 2-170 (260)
370 cd09239 BRO1_HD-PTP_like Prote 75.0 70 0.0015 40.4 16.2 56 870-926 92-156 (361)
371 PF04053 Coatomer_WDAD: Coatom 74.6 57 0.0012 42.3 15.7 91 901-1005 269-375 (443)
372 PF05053 Menin: Menin; InterP 74.1 39 0.00085 44.1 13.6 74 976-1052 276-351 (618)
373 KOG0687 26S proteasome regulat 74.1 53 0.0011 40.5 13.9 132 952-1092 81-212 (393)
374 COG3947 Response regulator con 74.0 36 0.00078 41.3 12.3 78 893-978 279-356 (361)
375 PF11207 DUF2989: Protein of u 73.7 15 0.00033 42.4 9.0 65 928-997 134-198 (203)
376 KOG4507 Uncharacterized conser 71.8 19 0.00041 46.7 10.0 99 936-1048 213-312 (886)
377 PF00240 ubiquitin: Ubiquitin 71.3 5.3 0.00012 37.5 4.1 61 34-97 4-67 (69)
378 TIGR02710 CRISPR-associated pr 71.2 69 0.0015 40.6 14.7 115 892-1009 129-278 (380)
379 PF04190 DUF410: Protein of un 71.2 2.4E+02 0.0052 34.0 22.7 148 893-1048 10-170 (260)
380 PF05053 Menin: Menin; InterP 70.8 39 0.00085 44.2 12.5 70 935-1007 277-348 (618)
381 cd01763 Sumo Small ubiquitin-r 70.7 11 0.00023 37.7 6.3 70 23-95 9-81 (87)
382 PF09670 Cas_Cas02710: CRISPR- 70.4 1.1E+02 0.0024 38.9 16.6 139 937-1093 133-273 (379)
383 cd09242 BRO1_ScBro1_like Prote 70.3 53 0.0012 41.2 13.7 57 869-925 83-148 (348)
384 KOG0686 COP9 signalosome, subu 69.4 19 0.00041 45.2 9.0 105 893-1004 150-256 (466)
385 KOG2422 Uncharacterized conser 69.2 1.2E+02 0.0026 40.1 16.1 172 993-1174 254-450 (665)
386 PRK10941 hypothetical protein; 69.0 31 0.00068 41.7 10.8 78 978-1068 182-259 (269)
387 PF10952 DUF2753: Protein of u 69.0 30 0.00065 37.0 9.1 73 980-1052 4-83 (140)
388 KOG2908 26S proteasome regulat 68.8 2.7E+02 0.0058 34.9 18.2 94 987-1082 85-178 (380)
389 COG4649 Uncharacterized protei 68.1 76 0.0016 36.1 12.4 99 977-1088 94-194 (221)
390 PRK13184 pknD serine/threonine 68.1 30 0.00065 48.5 11.7 109 977-1092 512-622 (932)
391 KOG2422 Uncharacterized conser 68.0 2.3E+02 0.0049 37.7 18.2 151 930-1091 279-449 (665)
392 cd09034 BRO1_Alix_like Protein 66.2 1.8E+02 0.0039 36.2 17.2 35 1059-1093 249-283 (345)
393 PF14853 Fis1_TPR_C: Fis1 C-te 65.9 26 0.00057 32.1 7.1 40 1062-1106 2-41 (53)
394 KOG1497 COP9 signalosome, subu 65.7 1.9E+02 0.0041 35.9 15.9 109 933-1045 101-210 (399)
395 cd01770 p47_UBX p47-like ubiqu 65.3 19 0.00041 35.6 6.6 57 25-81 4-60 (79)
396 cd09240 BRO1_Alix Protein-inte 65.1 1.1E+02 0.0023 38.6 14.8 34 1060-1093 254-287 (346)
397 cd09239 BRO1_HD-PTP_like Prote 64.8 3.6E+02 0.0079 34.2 19.4 35 1059-1093 250-284 (361)
398 PF00244 14-3-3: 14-3-3 protei 64.6 48 0.001 39.3 11.1 60 993-1052 142-202 (236)
399 cd09246 BRO1_Alix_like_1 Prote 64.6 3.8E+02 0.0082 33.8 19.9 34 1059-1092 245-278 (353)
400 cd09246 BRO1_Alix_like_1 Prote 64.1 3.9E+02 0.0084 33.8 19.8 57 870-926 88-153 (353)
401 cd01790 Herp_N Homocysteine-re 63.7 15 0.00033 36.4 5.6 69 26-96 2-78 (79)
402 KOG3364 Membrane protein invol 63.7 52 0.0011 36.0 9.9 78 1018-1106 31-111 (149)
403 PF00789 UBX: UBX domain; Int 63.4 15 0.00033 35.8 5.7 47 24-70 5-51 (82)
404 PF10255 Paf67: RNA polymerase 63.1 11 0.00024 47.8 5.7 73 937-1010 124-197 (404)
405 PF10373 EST1_DNA_bind: Est1 D 63.0 53 0.0011 38.9 11.3 62 954-1031 1-62 (278)
406 PF12309 KBP_C: KIF-1 binding 62.8 1.6E+02 0.0034 37.6 15.6 116 935-1050 171-333 (371)
407 smart00101 14_3_3 14-3-3 homol 62.7 1.2E+02 0.0027 36.3 13.9 57 993-1049 144-201 (244)
408 COG3629 DnrI DNA-binding trans 62.4 2.3E+02 0.0049 34.8 16.1 157 938-1102 43-228 (280)
409 cd01796 DDI1_N DNA damage indu 62.2 10 0.00022 36.4 4.1 64 28-94 1-69 (71)
410 PRK13184 pknD serine/threonine 61.8 77 0.0017 44.7 13.7 109 902-1022 484-592 (932)
411 KOG3807 Predicted membrane pro 61.7 2.2E+02 0.0048 35.2 15.5 97 899-1005 190-303 (556)
412 cd09241 BRO1_ScRim20-like Prot 61.3 1.7E+02 0.0036 37.0 15.6 35 1059-1093 235-269 (355)
413 KOG0010 Ubiquitin-like protein 61.2 13 0.00027 47.7 5.6 69 24-96 14-85 (493)
414 smart00213 UBQ Ubiquitin homol 61.2 8.1 0.00018 35.2 3.1 56 26-86 1-57 (64)
415 PF14561 TPR_20: Tetratricopep 61.0 54 0.0012 33.2 9.1 72 931-1029 18-89 (90)
416 PF09613 HrpB1_HrpK: Bacterial 60.8 68 0.0015 36.0 10.6 89 974-1078 7-95 (160)
417 cd01767 UBX UBX (ubiquitin reg 60.3 24 0.00053 34.2 6.4 69 25-95 2-75 (77)
418 COG4649 Uncharacterized protei 60.3 2.7E+02 0.006 32.0 14.9 133 896-1047 61-195 (221)
419 KOG1924 RhoA GTPase effector D 59.8 17 0.00037 48.4 6.5 27 1684-1713 628-654 (1102)
420 PRK10941 hypothetical protein; 59.8 65 0.0014 39.1 11.1 79 934-1025 180-258 (269)
421 PF10255 Paf67: RNA polymerase 59.4 13 0.00028 47.2 5.4 74 979-1052 124-197 (404)
422 cd09241 BRO1_ScRim20-like Prot 59.3 1.6E+02 0.0035 37.0 15.0 37 889-925 102-147 (355)
423 PF10373 EST1_DNA_bind: Est1 D 59.3 98 0.0021 36.7 12.7 62 912-989 1-62 (278)
424 TIGR02561 HrpB1_HrpK type III 59.1 75 0.0016 35.3 10.3 91 887-993 4-94 (153)
425 cd01791 Ubl5 UBL5 ubiquitin-li 58.9 20 0.00044 34.8 5.5 68 25-95 1-71 (73)
426 KOG3807 Predicted membrane pro 58.5 1.6E+02 0.0034 36.4 13.6 122 941-1078 190-328 (556)
427 KOG0905 Phosphoinositide 3-kin 58.4 39 0.00084 47.2 9.5 26 1836-1862 309-336 (1639)
428 KOG0307 Vesicle coat complex C 58.2 54 0.0012 45.7 11.0 17 905-921 499-515 (1049)
429 KOG3783 Uncharacterized conser 58.1 5.8E+02 0.013 33.9 23.8 83 914-1006 250-332 (546)
430 PF07721 TPR_4: Tetratricopept 57.9 11 0.00023 29.1 2.8 24 936-959 2-25 (26)
431 cd09247 BRO1_Alix_like_2 Prote 57.6 4.9E+02 0.011 32.8 19.8 37 1059-1095 251-287 (346)
432 KOG2034 Vacuolar sorting prote 57.3 3.4E+02 0.0074 37.8 17.7 58 940-1008 363-420 (911)
433 KOG2114 Vacuolar assembly/sort 56.6 98 0.0021 42.3 12.6 48 958-1006 350-397 (933)
434 KOG0890 Protein kinase of the 56.3 4.2E+02 0.0091 40.7 19.4 110 973-1092 1666-1786(2382)
435 PF04625 DEC-1_N: DEC-1 protei 56.2 33 0.00071 41.5 7.5 53 1653-1709 133-195 (407)
436 KOG1310 WD40 repeat protein [G 56.2 38 0.00083 43.7 8.5 97 891-1003 372-471 (758)
437 PF14853 Fis1_TPR_C: Fis1 C-te 55.8 56 0.0012 30.0 7.4 29 1021-1049 3-31 (53)
438 COG5290 IkappaB kinase complex 55.0 4.5E+02 0.0098 36.2 17.6 26 1022-1047 938-963 (1243)
439 COG3014 Uncharacterized protei 54.0 2.3E+02 0.005 35.4 14.1 29 1063-1091 215-243 (449)
440 cd09240 BRO1_Alix Protein-inte 54.0 2.8E+02 0.0062 34.8 15.8 40 887-926 113-161 (346)
441 TIGR00601 rad23 UV excision re 53.5 17 0.00038 45.8 5.2 66 26-94 1-72 (378)
442 cd01774 Faf1_like2_UBX Faf1 ik 53.4 42 0.00091 33.7 6.8 46 23-70 2-47 (85)
443 KOG4521 Nuclear pore complex, 53.2 3.5E+02 0.0076 38.7 16.8 36 887-922 914-949 (1480)
444 PF04097 Nic96: Nup93/Nic96; 53.0 7.1E+02 0.015 33.9 20.3 18 901-918 266-283 (613)
445 KOG1920 IkappaB kinase complex 52.8 4E+02 0.0087 38.3 17.5 58 1031-1088 920-979 (1265)
446 cd01815 BMSC_UbP_N Ubiquitin-l 52.7 13 0.00029 36.4 3.1 51 44-96 19-74 (75)
447 KOG2460 Signal recognition par 52.5 2.7E+02 0.0059 36.6 15.0 35 1062-1096 423-457 (593)
448 cd09243 BRO1_Brox_like Protein 52.5 2.7E+02 0.0059 35.2 15.2 33 1059-1091 246-278 (353)
449 cd09243 BRO1_Brox_like Protein 52.3 2.3E+02 0.0051 35.8 14.6 38 887-924 103-152 (353)
450 PF10858 DUF2659: Protein of u 52.0 3.7E+02 0.0081 30.5 14.0 100 943-1048 101-200 (220)
451 cd09242 BRO1_ScBro1_like Prote 50.9 2.8E+02 0.006 35.0 15.0 33 1060-1092 243-275 (348)
452 KOG3024 Uncharacterized conser 50.3 1.9E+02 0.0041 35.3 12.5 134 902-1044 15-152 (312)
453 smart00166 UBX Domain present 50.1 46 0.001 32.6 6.5 55 25-80 4-58 (80)
454 PF04053 Coatomer_WDAD: Coatom 49.7 2.9E+02 0.0062 36.1 15.2 82 935-1045 347-428 (443)
455 KOG4563 Cell cycle-regulated h 49.5 36 0.00078 42.4 6.7 66 976-1041 40-105 (400)
456 KOG3824 Huntingtin interacting 49.4 37 0.00079 41.3 6.5 65 892-964 115-179 (472)
457 KOG0994 Extracellular matrix g 49.3 8.5E+02 0.018 35.1 19.2 21 986-1006 1534-1554(1758)
458 PF14858 DUF4486: Domain of un 48.8 4.8E+02 0.01 34.8 16.6 71 1022-1092 154-228 (542)
459 TIGR02710 CRISPR-associated pr 48.1 2.7E+02 0.0059 35.5 14.2 109 940-1051 135-278 (380)
460 KOG3364 Membrane protein invol 47.9 68 0.0015 35.2 7.6 69 934-1006 31-100 (149)
461 KOG0889 Histone acetyltransfer 47.4 1.7E+03 0.038 36.2 23.7 40 1141-1180 2810-2849(3550)
462 PF07721 TPR_4: Tetratricopept 47.1 24 0.00052 27.2 3.2 24 978-1001 2-25 (26)
463 COG3629 DnrI DNA-binding trans 46.9 4.3E+02 0.0094 32.5 15.1 75 934-1016 152-226 (280)
464 PF14561 TPR_20: Tetratricopep 46.1 39 0.00085 34.2 5.4 36 887-922 16-51 (90)
465 KOG0276 Vesicle coat complex C 45.7 2.1E+02 0.0046 38.1 12.7 48 946-1006 648-695 (794)
466 PF07271 Cytadhesin_P30: Cytad 44.4 95 0.002 37.3 8.8 22 1600-1623 203-224 (279)
467 PF03097 BRO1: BRO1-like domai 43.3 1.8E+02 0.0038 36.7 11.9 36 1059-1094 237-272 (377)
468 KOG0994 Extracellular matrix g 43.2 1.3E+03 0.028 33.5 19.7 18 1031-1048 1537-1554(1758)
469 KOG0546 HSP90 co-chaperone CPR 42.6 44 0.00096 41.5 6.0 118 982-1112 227-355 (372)
470 cd09244 BRO1_Rhophilin Protein 41.6 2.5E+02 0.0055 35.5 12.6 32 935-966 106-146 (350)
471 TIGR02561 HrpB1_HrpK type III 41.3 1.6E+02 0.0035 32.8 9.5 87 976-1078 9-95 (153)
472 COG3914 Spy Predicted O-linked 40.2 4.8E+02 0.01 35.0 14.7 110 927-1050 60-173 (620)
473 cd02682 MIT_AAA_Arch MIT: doma 40.1 2.1E+02 0.0045 28.4 9.0 36 976-1011 5-40 (75)
474 cd09245 BRO1_UmRIM23-like Prot 39.7 7.4E+02 0.016 32.1 16.5 34 1059-1092 294-327 (413)
475 cd09247 BRO1_Alix_like_2 Prote 39.4 5.8E+02 0.012 32.2 15.3 34 1018-1051 252-285 (346)
476 PF10858 DUF2659: Protein of u 39.2 3.1E+02 0.0068 31.1 11.1 102 898-1005 98-199 (220)
477 KOG1310 WD40 repeat protein [G 38.6 99 0.0022 40.3 8.3 79 951-1045 390-471 (758)
478 KOG4849 mRNA cleavage factor I 38.5 1.3E+02 0.0028 37.1 8.8 33 1629-1661 290-322 (498)
479 KOG2460 Signal recognition par 38.2 1.1E+03 0.024 31.4 26.1 33 1145-1177 424-456 (593)
480 PF08311 Mad3_BUB1_I: Mad3/BUB 37.9 2.3E+02 0.005 30.4 10.0 86 991-1088 40-126 (126)
481 KOG3824 Huntingtin interacting 37.5 68 0.0015 39.1 6.3 57 942-1006 123-179 (472)
482 KOG1258 mRNA processing protei 37.1 1.2E+03 0.026 31.4 24.5 173 893-1091 297-471 (577)
483 cd01800 SF3a120_C Ubiquitin-li 36.8 33 0.00072 33.3 3.2 53 41-96 12-68 (76)
484 COG3014 Uncharacterized protei 36.1 9.7E+02 0.021 30.3 15.5 71 1021-1091 60-155 (449)
485 PF11976 Rad60-SLD: Ubiquitin- 36.0 35 0.00075 32.4 3.1 68 26-95 1-71 (72)
486 PRK14707 hypothetical protein; 35.8 9.4E+02 0.02 37.1 17.4 195 902-1100 1008-1206(2710)
487 KOG2199 Signal transducing ada 35.7 89 0.0019 39.3 7.1 8 1702-1709 450-457 (462)
488 KOG1984 Vesicle coat complex C 35.5 2.7E+02 0.0059 38.5 11.8 36 1621-1656 164-201 (1007)
489 cd01814 NTGP5 Ubiquitin-like N 35.2 62 0.0014 34.2 4.9 71 24-96 3-89 (113)
490 PRK15180 Vi polysaccharide bio 35.1 3.4E+02 0.0074 35.2 11.9 125 901-1049 297-421 (831)
491 PF03097 BRO1: BRO1-like domai 34.8 6.6E+02 0.014 31.6 15.1 41 886-926 100-149 (377)
492 KOG2063 Vacuolar assembly/sort 34.4 5.4E+02 0.012 36.3 14.8 30 892-921 503-532 (877)
493 KOG0132 RNA polymerase II C-te 33.9 3E+02 0.0066 37.6 11.7 42 759-802 62-103 (894)
494 KOG3024 Uncharacterized conser 33.7 5.1E+02 0.011 31.9 12.6 61 1024-1085 90-151 (312)
495 cd01772 SAKS1_UBX SAKS1-like U 33.7 1.1E+02 0.0024 30.1 6.3 53 25-79 4-56 (79)
496 cd02681 MIT_calpain7_1 MIT: do 33.6 3.7E+02 0.008 26.7 9.7 32 1063-1094 8-39 (76)
497 TIGR03504 FimV_Cterm FimV C-te 33.2 79 0.0017 28.0 4.6 25 897-921 3-27 (44)
498 cd02681 MIT_calpain7_1 MIT: do 33.1 2.2E+02 0.0048 28.2 8.1 34 892-925 5-38 (76)
499 PF04212 MIT: MIT (microtubule 33.0 3.2E+02 0.0069 25.9 9.1 34 1063-1096 7-40 (69)
500 COG4976 Predicted methyltransf 32.8 63 0.0014 38.2 4.9 56 901-964 3-58 (287)
No 1
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=100.00 E-value=4.6e-130 Score=1252.02 Aligned_cols=1017 Identities=22% Similarity=0.295 Sum_probs=830.6
Q ss_pred EcCCCCceEEEccCh-hhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc----CceeEEeccCCCHHHHH
Q 000187 31 NLPDDTRVILKGIST-DRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK----PCVLSLTEEDFDEEGAA 105 (1888)
Q Consensus 31 ~lP~~~~~~~~~is~-d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk----~~~L~lVeepYter~Ar 105 (1888)
..|...+.+...+++ +.||||||+|++++.|||+|||+|.+ ++..|+++.++..+- ||+|.+|.+|||+|+||
T Consensus 37 i~p~~~~~~~~~l~~~~~v~~~~q~l~~~~~t~~~tc~~L~~--~~~~~d~~~~~~~i~~~~~~~~l~~v~~pY~~re~~ 114 (1236)
T KOG1839|consen 37 IQPSTGGLLSFELSSFSKVQDVRQVLLDRPLTCYITCLSLLL--DESKLDYFHIKKKISSGKPGCVLASVLGPYTPREAR 114 (1236)
T ss_pred ccCCCCCceEEEecCcchhhhHHHHHhcccccCceeEEEEEe--cccccccccceeeecCCCcceEEEEecccCChHHHH
Confidence 367777777777755 99999999999999999999999985 889999988777653 59999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCC-Cccccc-ccc-cccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCcccCCCC
Q 000187 106 AHVRRVLDIVACTTSFGPCGFDAGKNVP-DSKSAK-KTT-AKNEKDKQSQPPSSPQSKNSKSSNDVTVDGDGEMSHAFPK 182 (1888)
Q Consensus 106 ~Hvrrvrdll~~~~~~g~~~~~~g~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pk 182 (1888)
+||++|||||... .+.+++....+. .+.... +++ ...++.+....+|.++.+++|++.++.+..+++ ..+-|+
T Consensus 115 ~Hv~~vrdlL~~~---~~~sa~~~~~~a~~~~~~~~~i~~~~~~~t~~~p~d~~~~~~~lp~~~e~~~~~~~~-~~~~~~ 190 (1236)
T KOG1839|consen 115 LHVHSVRDLLSSS---DFASAYSPLMKAFFDHNKLGNIPLGDRKNTWVDPEDCKPPFPDLPGEDERWGGDGGE-GRSGPK 190 (1236)
T ss_pred HHHHHHHHHHhcC---ChhhhhcchhhhhhhhccccCCCccccccCCCCccccCCCCCCCCccccccCCCCCc-CCCCcc
Confidence 9999999999522 233333333221 111111 111 112234446789999999999999999988883 455678
Q ss_pred ccccccccccccCCCChhhhhcccccccccCCCCCceEEEEEEEeCCceEEEEEeccceeecCC-----------Ccccc
Q 000187 183 LSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGK-----------QRILC 251 (1888)
Q Consensus 183 l~~~~k~~s~S~wnPPp~~~r~~~~~~~~~~~~~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~-----------~~~~~ 251 (1888)
..+|+++|+||+|||||++||+ +||||||+|+|+||++||||||++|||||++ ++.++
T Consensus 191 ~~~~~~~La~sp~nppp~~~~~-----------~g~l~yL~v~t~e~~~~~it~~~~gfyvNns~~~~fdP~p~~~~~ls 259 (1236)
T KOG1839|consen 191 WAKCFRVLAFSPCNPPPERRVL-----------DGDLFYLHVVTLEGSVFHITAIIKGFYVNNSQSSKFDPSPSGSGDLS 259 (1236)
T ss_pred cchHHHHHhcCCCCCCCcceee-----------cccEEEEEEEEeeccEEEEEEeeeeEEEeccccCCCCCCCCCCccch
Confidence 9999999999999999999998 8999999999999999999999999999964 35799
Q ss_pred chHHHHHhhhcHHHHHHHHHHHHHhhccCCCccCCCcccCCccccCCCCCCCCCCCCCCCcccccc--CCCCCCCCCCCC
Q 000187 252 HNIVDLLGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPIAAQSPSVFPPLPAEDEAW--GGNGGGLGRDGK 329 (1888)
Q Consensus 252 HsLv~LL~~iSp~F~~~f~~l~k~~~~~~~fe~~~~~~~~~~Wl~p~~~~~~~~~~~~~~~Ed~~~--~~~~~Gq~rD~~ 329 (1888)
|||++||+++||.|+++|..++|+++++|+|||++++||..+|+|+++.+ ..+++|+|+.+. +.+.+|++||
T Consensus 260 ~sl~~ll~~~S~kfkk~~~~~~~~~s~~~~~er~~~~~~~~sw~~~~~~~----~~d~~r~~~A~~~~~~~~~G~~rd-- 333 (1236)
T KOG1839|consen 260 HSLIRLLASLSPKFKKAFQTILKKLSSEELAERVLLKTPDESWIVHPLPH----LADAARAEEALTGYYLEHIGYTRD-- 333 (1236)
T ss_pred hhHHHHHHhhChHHHHHHHHHHHHHhhhhHHHhccccCCCccccccCCCc----hHHHHhhHHHhccceeccCccccc--
Confidence 99999999999999999999999999999999999999999999998876 455789999875 4467999999
Q ss_pred CCCcchHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc-cccCCCC-----CCccccCCeeEEeecc
Q 000187 330 SDLIPWANEFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVH-HVMGKPE-----LIYPSNCKILYTEIIG 403 (1888)
Q Consensus 330 ~~~rdWNeEfQ~~rELP~~t~~ER~~RdR~ifkl~sDFVdAA~~gA~~VI~-~~m~~~~-----~~~fi~nnIfFs~~vg 403 (1888)
||||||++||||+++++||++|+|.+|||+.||+++|++|||+||+ ++++.+. .|||+||||||++++
T Consensus 334 -----wNee~Qt~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~Ga~~vi~~ni~ainp~e~~~~qm~i~~nIf~s~~~- 407 (1236)
T KOG1839|consen 334 -----WNEELQTTREMPHKDLPDRGARERNLNKVRGDFVKAATRGALAVISGNIVAINPEEPTILQMFIWNNIFFSEGF- 407 (1236)
T ss_pred -----hhhhhhhhhhcCccccchhhhhhhccccchhhhcccccccccccccCccccCCCchHHHHHHHHHhhhheeeec-
Confidence 9999999999999999999999999999999999999999999999 6666432 479999999999873
Q ss_pred ceeEeeecccccccccccccccCccccCcchhhhhhhhhccccccccccccCCcccccEEEEEecCeEEEEE--e-cccc
Q 000187 404 GLRIAIMKDASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVK--V-QERE 480 (1888)
Q Consensus 404 ~~~~~v~rD~~D~~~k~d~~~~G~~~~g~~~a~~A~~n~LkGv~ay~~~~v~gL~TlgtvvVDYrGyRvvAq--v-PGi~ 480 (1888)
+| +++ |+. .+|+.+|+.|..+||+|++.|..++++||+||||++||||||||+|| + |||+
T Consensus 408 ----dv-~~~----y~~--------~g~dvaa~~a~s~dl~g~r~~n~~d~~~l~~Lgt~~vDy~g~rv~Aq~i~~p~~l 470 (1236)
T KOG1839|consen 408 ----DV-RGH----YKL--------GGGDVAAYAAPSTDLNGKRLYNTVDVPGLKTLGTTVVDYRGYRVVAQVIINPGIL 470 (1236)
T ss_pred ----cc-ccc----ccc--------cchhHHhhhhccccccccccccccchhhhcchhheeeeccCceEEEEeecCCcch
Confidence 23 343 442 67788899999999999999999999999999999999999999999 6 9998
Q ss_pred ccccCC--cccccccccCcCcccccc-----------ccccccccccccCCCCCCCCCCCCCccccccc--ccchhhHHH
Q 000187 481 NKKVGP--LFQSIELEQPEGGANALN-----------INSLRLLIHETTTLEDNKPAPNLQNLEREELN--ASQMFVERL 545 (1888)
Q Consensus 481 ~~~~~~--~~~~i~l~~~egG~~~l~-----------~~~L~l~~H~v~~~~~~~~v~~~~~~e~~~l~--~~R~YvlDl 545 (1888)
++.+.+ .++++++ |+..+. .+.+.+++|.+.+...+....++.++++++|. |||||++||
T Consensus 471 ~~d~~~~~~~g~~~~-----~K~~~~~e~~~~l~~~~s~~l~i~~h~~i~~~d~~~~eL~~s~eskgi~g~DgR~yllDL 545 (1236)
T KOG1839|consen 471 EGDQSQSVIYGPVDE-----GKELLSEEAYQRLLERASKLLLISPHPVINAKDTVLPELGISFESKGISGVDGRHYLLDL 545 (1236)
T ss_pred hcccccceeeccccc-----cccccccHHHHHhhcccccccccCCccccchhhccccccccccccccccCCCcchhHHHH
Confidence 766544 5555554 333322 37899999999877766778889999999996 899999999
Q ss_pred Hhhhhhhh-----------hccCCcccccccHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhhhhhhhhccCCCcc
Q 000187 546 LEESIAKL-----------EEEKPEREHFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSNEKAKSEMKVEGLGTPL 614 (1888)
Q Consensus 546 ~R~~~~~l-----------e~e~~~~~~~LRpELv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 614 (1888)
+|++|+++ .+.++|++++|||||+..|++|+..-.....++... +....+.... .+....++..
T Consensus 546 ~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~e~~~~--~~~~ds~~~~-~~~d~~~~~~-- 620 (1236)
T KOG1839|consen 546 MHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAVENAAE--DYGFDSSNPF-KKSDAIGLVP-- 620 (1236)
T ss_pred HhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcchh--hccCCccccc-cccchhhHHH--
Confidence 99987743 346899999999999999999865443332221111 0000000000 0000000000
Q ss_pred hhhcccccccCCCCccccccccccccCCCCcccccccchhhhhhhhhh--hhhhHHHHhhcCChHHhhhh--cccccc--
Q 000187 615 KSLKNNRKKSEGSNHKIHSETLKSQADGVNGESEKATSASIEARLESR--DKENELALKNLLSDEAFARL--KESETG-- 688 (1888)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~e~~~~~~~~L~~dAF~~~--~~~~~~-- 688 (1888)
. +..+.-+..++- ++.+.... ........ ..-...+..--++++.|... .-..++
T Consensus 621 -----v-----------~~l~~~is~d~~--eS~~~~~~-dav~~~~~al~k~~~~~~~~~fnp~~f~s~~v~~~~t~~~ 681 (1236)
T KOG1839|consen 621 -----V-----------HKLVNCISADGR--ESSKLSLD-DAVKYATKALVKLVAVCGPYGFNPAGFYSLAVVLYHTEDF 681 (1236)
T ss_pred -----H-----------HHHHHhhccccc--cccccchH-HHHHHHHHHHHHHHhhhcccccCccccccCceEecCcccc
Confidence 0 000000000000 00000000 00000000 00001122234555665542 111222
Q ss_pred cccccHHHHHHHHHHHHHHchHHHHHHHhccCCCCCCCcchHHHHHHhcccccchhHHHHHHhh-------hhhHHHHHH
Q 000187 689 LHCKSLEELIDLSHNYYVEVALPKLVTDFGSLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLSE-------KLSHVQSLC 761 (1888)
Q Consensus 689 ~~~~~~eelv~~as~fL~~~~IP~lV~dl~~~~~~P~DG~sLt~~lH~rGINmRYLG~Va~l~~-------~L~~l~~l~ 761 (1888)
.....+++.+.++++||...+||.+++++.++.+.|+||++|+++||..|||+||||+++..+. .+.++.+|+
T Consensus 682 ~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~ 761 (1236)
T KOG1839|consen 682 NQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELG 761 (1236)
T ss_pred chhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHH
Confidence 2345567889999999999999999999999999999999999999999999999999998763 267788999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhhccccCCCC-----------C-----------CCC--------
Q 000187 762 IHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVHESDGL-----------N-----------KSH-------- 811 (1888)
Q Consensus 762 ~~EMIaRAaKHIlRa~lr~l~~~~~la~AIsHfLNcLLG~~~~~~~-----------~-----------~~~-------- 811 (1888)
+-|++.|++||+|+.++|. .....+..+++|||||+|+..+.... . ...
T Consensus 762 ~~ei~~RslKhvlK~~~r~-l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~ 840 (1236)
T KOG1839|consen 762 VGEIALRSLKHVLKDNLRL-LGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKG 840 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCccccccccc
Confidence 9999999999999999998 58889999999999999998544210 0 000
Q ss_pred -CCchhHHHHHHHHHHHhhccccCCCChh------hhhHHHHHHHHHHHhhhhhhcccccCCCC---CChhHHHHhhhcc
Q 000187 812 -NVHPLVWRWLELFLMKRYEWDLNGLNFK------DVRKFAILRGLCHKVGIELVSRDFDMDSP---SPFRKIDVVSLVP 881 (1888)
Q Consensus 812 -~~~~~lw~~I~~~lk~rf~y~L~~~~~~------~l~klsLLReLc~klGIqL~aR~Y~fdsa---~~F~~eDIlnl~P 881 (1888)
-....+|++|+...+.+|++........ ...++++.+..|.+.|++..+|.|+|+.. ..|...||+++.|
T Consensus 841 ~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p 920 (1236)
T KOG1839|consen 841 HLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRP 920 (1236)
T ss_pred ccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCccccccccc
Confidence 1123599999999999999987755443 35588999999999999999999999984 7899999999999
Q ss_pred chhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000187 882 VHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 961 (1888)
Q Consensus 882 vvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKA 961 (1888)
++|+..+...++...++.|+..+.+|.+.+|.+ .-+++.++.+++|..|++++.+|..||.++.++|++++|+.+.++|
T Consensus 921 ~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka 999 (1236)
T KOG1839|consen 921 VIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKA 999 (1236)
T ss_pred ccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000187 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
+.+++|++|.|++++...|.+|+.+++..++...|+..+.+|++++...+|++||.++.+..|++.+++.+++++.|+++
T Consensus 1000 ~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~ 1079 (1236)
T KOG1839|consen 1000 CIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRY 1079 (1236)
T ss_pred eeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000187 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 1121 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~Ae 1121 (1888)
++.|+++..+++|+.+..++.+++.+|+++..++++..|+.+.+.++.||...+|++|.++.++..|+..+++.++..++
T Consensus 1080 le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~~~T~~~v~~Qk 1159 (1236)
T KOG1839|consen 1080 LESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLNLSTAIAVKIQK 1159 (1236)
T ss_pred HHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888887776
Q ss_pred HHH
Q 000187 1122 AAR 1124 (1888)
Q Consensus 1122 Al~ 1124 (1888)
.+.
T Consensus 1160 ~~~ 1162 (1236)
T KOG1839|consen 1160 KLL 1162 (1236)
T ss_pred HHH
Confidence 554
No 2
>PF13236 CLU: Clustered mitochondria
Probab=100.00 E-value=1.9e-41 Score=383.81 Aligned_cols=197 Identities=19% Similarity=0.210 Sum_probs=164.3
Q ss_pred chHHHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-ccCC-----CCCCccccCCeeEEeeccceeE
Q 000187 334 PWANEFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVHH-VMGK-----PELIYPSNCKILYTEIIGGLRI 407 (1888)
Q Consensus 334 dWNeEfQ~~rELP~~t~~ER~~RdR~ifkl~sDFVdAA~~gA~~VI~~-~m~~-----~~~~~fi~nnIfFs~~vg~~~~ 407 (1888)
|||||||+++|||++|++||+.|+|+|++|++|||+||++||++||++ +++. +..++|+||||||||+.+
T Consensus 1 DWNeefQ~~~elp~~t~~er~~r~r~l~~l~~dFv~aA~~~a~~Ii~~~~~p~n~~~~~~~~~y~~nnIff~~~~d---- 76 (221)
T PF13236_consen 1 DWNEEFQSLRELPRETLEERIERDRKLSKLHSDFVEAATRGAMAIIDENILPINPKEIKPGQKYLYNNIFFSFADD---- 76 (221)
T ss_pred ChHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCcCEEEECCEEEEEecC----
Confidence 599999999999999999999999999999999999999999999994 4442 235799999999999733
Q ss_pred eeecccccccccccccccCccccCcchhhhhhhhhccccccccccccCCcccccEEEEEecCeEEEEE--eccccccccC
Q 000187 408 AIMKDASNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVATLGVVNVRYCGYIAVVK--VQERENKKVG 485 (1888)
Q Consensus 408 ~v~rD~~D~~~k~d~~~~G~~~~g~~~a~~A~~n~LkGv~ay~~~~v~gL~TlgtvvVDYrGyRvvAq--vPGi~~~~~~ 485 (1888)
..|.+ . ..+|+.+|++|++|||+|+++|.+++++|||||+|||||||||||+|| +|||++.+..
T Consensus 77 -----~~~~~-~--------~~ggdeaA~~aa~~dLkg~~~~~~~~~~~l~~~lt~iVDY~G~Rv~AqsilPg~~~~~~~ 142 (221)
T PF13236_consen 77 -----SRGIY-E--------NLGGDEAARKAAGHDLKGVNALNQADIPGLHTPLTAIVDYRGYRVLAQSILPGILNREQE 142 (221)
T ss_pred -----ccccc-c--------cccccHHHHHHhhccHHHHHHHHhCCCCCCcccCEEEEEeCCEEEEEEecCCcCCCCCCC
Confidence 21222 1 256788999999999999999999999999999999999999999999 6999854322
Q ss_pred CcccccccccCcCccccccc-----------cccccccccccCCCCCCCCCCCCCccccccc--ccchhhHHHHhhhhhh
Q 000187 486 PLFQSIELEQPEGGANALNI-----------NSLRLLIHETTTLEDNKPAPNLQNLEREELN--ASQMFVERLLEESIAK 552 (1888)
Q Consensus 486 ~~~~~i~l~~~egG~~~l~~-----------~~L~l~~H~v~~~~~~~~v~~~~~~e~~~l~--~~R~YvlDl~R~~~~~ 552 (1888)
+...| +..++|.++.+. +.|+|+.|.|++.++ .+.++++.|.+++. |+|+|||||+|++|++
T Consensus 143 ~~vvY---Gs~d~g~~i~~~~~~~~~l~~~a~~l~Lk~H~v~~~~~--~~~l~~s~d~kg~~G~D~R~YilDl~R~~P~d 217 (221)
T PF13236_consen 143 STVVY---GSSDGGKTIHSDEEFHELLKKIAKALNLKPHKVGDSEG--SVELYGSADIKGIIGSDGRYYILDLARTFPPD 217 (221)
T ss_pred ceEEE---CCcCCCCeecCCHHHHHHHHHHHHHhCcCcceecCCCC--cEEEEeeeeeEEEEcCCCCEEEEeccccCCCC
Confidence 22222 334557666653 799999999986653 77889999999986 8999999999999976
Q ss_pred h
Q 000187 553 L 553 (1888)
Q Consensus 553 l 553 (1888)
.
T Consensus 218 ~ 218 (221)
T PF13236_consen 218 V 218 (221)
T ss_pred c
Confidence 4
No 3
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=100.00 E-value=1.2e-42 Score=448.06 Aligned_cols=934 Identities=37% Similarity=0.489 Sum_probs=640.5
Q ss_pred cCCCCccccccccccccCCCChhhhhcccccccccCCCCCceEEEEEEEeCCceEEEEEeccceeecCCCccccchHHHH
Q 000187 178 HAFPKLSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGKQRILCHNIVDL 257 (1888)
Q Consensus 178 ~~~pkl~~~~k~~s~S~wnPPp~~~r~~~~~~~~~~~~~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~~~~~~HsLv~L 257 (1888)
.+.+++..++.+|..-+.+||.-+..+..+. ..+|.+-+-+..+.|+..++-+.+.|||-..+...++|+++||
T Consensus 50 ~~~~~v~~~~q~l~~~~~t~~~tc~~L~~~~------~~~d~~~~~~~i~~~~~~~~l~~v~~pY~~re~~~Hv~~vrdl 123 (1236)
T KOG1839|consen 50 SSFSKVQDVRQVLLDRPLTCYITCLSLLLDE------SKLDYFHIKKKISSGKPGCVLASVLGPYTPREARLHVHSVRDL 123 (1236)
T ss_pred cCcchhhhHHHHHhcccccCceeEEEEEecc------cccccccceeeecCCCcceEEEEecccCChHHHHHHHHHHHHH
Confidence 3456788899999999999999888774332 3788999999999999999999999999988899999999999
Q ss_pred HhhhcHHHHHHHHHHHHHhhccCCCccCCCcccCCccccCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCcchHH
Q 000187 258 LGQLSRAFDNAYNELMNAFSERNKFGNLPYGFRANTWLIPPIAAQSPSVFPPLPAEDEAWGGNGGGLGRDGKSDLIPWAN 337 (1888)
Q Consensus 258 L~~iSp~F~~~f~~l~k~~~~~~~fe~~~~~~~~~~Wl~p~~~~~~~~~~~~~~~Ed~~~~~~~~Gq~rD~~~~~rdWNe 337 (1888)
| .+..|..+|..+|+.+..++|+.++|.++..++|++|.. ....++++|.||+.|+++++ ++|-|. .|+.
T Consensus 124 L--~~~~~~sa~~~~~~a~~~~~~~~~i~~~~~~~t~~~p~d---~~~~~~~lp~~~e~~~~~~~-~~~~~~----~~~~ 193 (1236)
T KOG1839|consen 124 L--SSSDFASAYSPLMKAFFDHNKLGNIPLGDRKNTWVDPED---CKPPFPDLPGEDERWGGDGG-EGRSGP----KWAK 193 (1236)
T ss_pred H--hcCChhhhhcchhhhhhhhccccCCCccccccCCCCccc---cCCCCCCCCccccccCCCCC-cCCCCc----ccch
Confidence 9 899999999999999999999999999999999999942 33467899999999999987 888766 6999
Q ss_pred HHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccCCC-CCCccc---cCCeeEEeeccceeEeeeccc
Q 000187 338 EFLFVASMPCKTAEERQIRDRKAFLLHNLFVDVAIFRAIKAVHHVMGKP-ELIYPS---NCKILYTEIIGGLRIAIMKDA 413 (1888)
Q Consensus 338 EfQ~~rELP~~t~~ER~~RdR~ifkl~sDFVdAA~~gA~~VI~~~m~~~-~~~~fi---~nnIfFs~~vg~~~~~v~rD~ 413 (1888)
+|-.|.-+||+++++|..|++.+|.||..|++.-++.++++|++++.++ ....|- .++ |++...|-++-
T Consensus 194 ~~~~La~sp~nppp~~~~~~g~l~yL~v~t~e~~~~~it~~~~gfyvNns~~~~fdP~p~~~-------~~ls~sl~~ll 266 (1236)
T KOG1839|consen 194 CFRVLAFSPCNPPPERRVLDGDLFYLHVVTLEGSVFHITAIIKGFYVNNSQSSKFDPSPSGS-------GDLSHSLIRLL 266 (1236)
T ss_pred HHHHHhcCCCCCCCcceeecccEEEEEEEEeeccEEEEEEeeeeEEEeccccCCCCCCCCCC-------ccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999988764 222332 233 11211121222
Q ss_pred ccccccccccccCccccCcchhhhhhhhhccccccccccccCCcc----------cccEEEEEecCeEEEEEeccccccc
Q 000187 414 SNACCKVDTKIDGSQATGVDKNNLVERNLLKGITADENTAAHDVA----------TLGVVNVRYCGYIAVVKVQERENKK 483 (1888)
Q Consensus 414 ~D~~~k~d~~~~G~~~~g~~~a~~A~~n~LkGv~ay~~~~v~gL~----------TlgtvvVDYrGyRvvAqvPGi~~~~ 483 (1888)
.+-+.|. .+-.+...--....+.++++.++ ...++..++=+- -++-..++.+||.-.-- +
T Consensus 267 ~~~S~kf-kk~~~~~~~~~s~~~~~er~~~~--~~~~sw~~~~~~~~~d~~r~~~A~~~~~~~~~G~~rdwN-------e 336 (1236)
T KOG1839|consen 267 ASLSPKF-KKAFQTILKKLSSEELAERVLLK--TPDESWIVHPLPHLADAARAEEALTGYYLEHIGYTRDWN-------E 336 (1236)
T ss_pred HhhChHH-HHHHHHHHHHHhhhhHHHhcccc--CCCccccccCCCchHHHHhhHHHhccceeccCccccchh-------h
Confidence 2222221 00000000011145677788887 444444444331 12245566666644311 1
Q ss_pred cCCccccccc-ccCcCccccccccccccccccccCCCCCCCCCCCCCcccccccccchhhH-HHHhhhhhhhhccCCccc
Q 000187 484 VGPLFQSIEL-EQPEGGANALNINSLRLLIHETTTLEDNKPAPNLQNLEREELNASQMFVE-RLLEESIAKLEEEKPERE 561 (1888)
Q Consensus 484 ~~~~~~~i~l-~~~egG~~~l~~~~L~l~~H~v~~~~~~~~v~~~~~~e~~~l~~~R~Yvl-Dl~R~~~~~le~e~~~~~ 561 (1888)
..+......- +.+|++.+..+..+++--.|+.-... -...+.+.+ -.+.+.--+++ -|+..++..++.......
T Consensus 337 e~Qt~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~G--a~~vi~~ni--~ainp~e~~~~qm~i~~nIf~s~~~dv~~~ 412 (1236)
T KOG1839|consen 337 ELQTTREMPHKDLPDRGARERNLNKVRGDFVKAATRG--ALAVISGNI--VAINPEEPTILQMFIWNNIFFSEGFDVRGH 412 (1236)
T ss_pred hhhhhhhcCccccchhhhhhhccccchhhhccccccc--ccccccCcc--ccCCCchHHHHHHHHHhhhheeeecccccc
Confidence 1222232333 67899999999888888877642221 111111211 11222222221 122223333332221111
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhhhhhhhhhhhhhccCCCcchhhcccccccCCCC--ccccccccccc
Q 000187 562 HFVRWELGACWIQHLQDQKNAEKDKKLSKEKAKKLSNEKAKSEMKVEGLGTPLKSLKNNRKKSEGSN--HKIHSETLKSQ 639 (1888)
Q Consensus 562 ~~LRpELv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 639 (1888)
+ |++.+|+++++.- ..+.. .. .......++...+||+.....++......+.. .....++.+..
T Consensus 413 y----~~~g~dvaa~~a~-s~dl~-------g~--r~~n~~d~~~l~~Lgt~~vDy~g~rv~Aq~i~~p~~l~~d~~~~~ 478 (1236)
T KOG1839|consen 413 Y----KLGGGDVAAYAAP-STDLN-------GK--RLYNTVDVPGLKTLGTTVVDYRGYRVVAQVIINPGILEGDQSQSV 478 (1236)
T ss_pred c----cccchhHHhhhhc-ccccc-------cc--ccccccchhhhcchhheeeeccCceEEEEeecCCcchhcccccce
Confidence 1 8899999997622 11100 00 00111224566788887766666654333211 00000000000
Q ss_pred cCCCCcccccccchhhhhhhhhhhhhhHHHHhhcCChHHhhhhcccccccccccHHHHHHHHHHHHHHchHHHHHHHhcc
Q 000187 640 ADGVNGESEKATSASIEARLESRDKENELALKNLLSDEAFARLKESETGLHCKSLEELIDLSHNYYVEVALPKLVTDFGS 719 (1888)
Q Consensus 640 ~~~~~~~~~n~~~~~~~~~~~~~~~e~~~~~~~~L~~dAF~~~~~~~~~~~~~~~eelv~~as~fL~~~~IP~lV~dl~~ 719 (1888)
+ .+ .....+..++.++|.+.....+..+.......+.++.. +.|++...+.+
T Consensus 479 ~------------~g-----------~~~~~K~~~~~e~~~~l~~~~s~~l~i~~h~~i~~~d~-----~~~eL~~s~es 530 (1236)
T KOG1839|consen 479 I------------YG-----------PVDEGKELLSEEAYQRLLERASKLLLISPHPVINAKDT-----VLPELGISFES 530 (1236)
T ss_pred e------------ec-----------cccccccccccHHHHHhhcccccccccCCccccchhhc-----ccccccccccc
Confidence 0 00 01125667888899988887776666555666666532 78888888888
Q ss_pred CCCCCCCcc-hHHHHHHhcccccchhH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH
Q 000187 720 LELSPVDGR-TLTDFMHTRGLQMRSLG--HVVKLSEKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALN 796 (1888)
Q Consensus 720 ~~~~P~DG~-sLt~~lH~rGINmRYLG--~Va~l~~~L~~l~~l~~~EMIaRAaKHIlRa~lr~l~~~~~la~AIsHfLN 796 (1888)
..+.|.||+ .|.|+||.++..|+||| ++..+..+++|...+|..|||.+.++|.+.+.++.+ -|
T Consensus 531 kgi~g~DgR~yllDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~-------------e~ 597 (1236)
T KOG1839|consen 531 KGISGVDGRHYLLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAV-------------EN 597 (1236)
T ss_pred ccccCCCcchhHHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHH-------------hc
Confidence 899999998 89999999999999999 999998899999999999999999999999888663 11
Q ss_pred HhhccccCCCCCCCCCCchhHHHHHHHHHHHhhccccCCCChhhhhHHHHHHHHHHHhhhhhhcccccCCCCCChhHHHH
Q 000187 797 LMLGVHESDGLNKSHNVHPLVWRWLELFLMKRYEWDLNGLNFKDVRKFAILRGLCHKVGIELVSRDFDMDSPSPFRKIDV 876 (1888)
Q Consensus 797 cLLG~~~~~~~~~~~~~~~~lw~~I~~~lk~rf~y~L~~~~~~~l~klsLLReLc~klGIqL~aR~Y~fdsa~~F~~eDI 876 (1888)
+.- +|.|++...|...|+
T Consensus 598 ~~~--------------------------------------------------------------~~~~ds~~~~~~~d~ 615 (1236)
T KOG1839|consen 598 AAE--------------------------------------------------------------DYGFDSSNPFKKSDA 615 (1236)
T ss_pred chh--------------------------------------------------------------hccCCccccccccch
Confidence 100 566788888888888
Q ss_pred hhhccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHH
Q 000187 877 VSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 956 (1888)
Q Consensus 877 lnl~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~ 956 (1888)
....+++++..+.+.+.+ +.. .-..++|.+++-.++......++..+...+-++.+ +.+++..+++.+|..
T Consensus 616 ~~~~~v~~l~~~is~d~~---eS~-----~~~~~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~~ 686 (1236)
T KOG1839|consen 616 IGLVPVHKLVNCISADGR---ESS-----KLSLDDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAAI 686 (1236)
T ss_pred hhHHHHHHHHHhhccccc---ccc-----ccchHHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhhh
Confidence 888888888888777665 111 12345889998889888888888877665555555 999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000187 957 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 957 ~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
+.++++++.++.+|.++|+++..|..++.+++....+.+|+.+-.+++.+..+.++..||..+.+|.+.+++-...+ +
T Consensus 687 ~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--e 764 (1236)
T KOG1839|consen 687 QQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--E 764 (1236)
T ss_pred hhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888877776 8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000187 1037 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 1116 (1888)
Q Consensus 1037 eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka 1116 (1888)
-++++++.+++.+.+..+.++..++.+ +.|+.++.-++. |..+.+-.++++++. +.++..
T Consensus 765 i~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~---av~~~~t~~~~~ka~----~~~~~~------------ 824 (1236)
T KOG1839|consen 765 IALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEA---AVQKEQTTLEILKAK----DLRTQD------------ 824 (1236)
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccc---cCCCccchHHHHhhh----hhhhhh------------
Confidence 899999999999999999999999888 667766655443 555555555555433 111111
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCCCCCCCCcchhhhhcc
Q 000187 1117 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRES 1196 (1888)
Q Consensus 1117 ~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~~a~~eIa~LEikyet 1196 (1888)
+.+ +...++..+....+.....++.+|..-....+.+.....++.++........ ++..+ ...
T Consensus 825 -----~~~-g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~--~~~ 887 (1236)
T KOG1839|consen 825 -----AAA-GTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSK---------IAVEK--LEK 887 (1236)
T ss_pred -----hcc-CCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccch---------hHHHH--HHH
Confidence 111 4455566677788888888998887766666666666667766666444432 11000 000
Q ss_pred ccccccCCCCCCCCcccc-CCCCCchhhhhhhhhcccCCCCccc-----cccccccccCCCCccccc-cccccccccccc
Q 000187 1197 SDEETHAPEPESDTDVNQ-GSSIPFQQQELVVEESAVEKPNITE-----EISSAIHEEGDDGWQPVQ-RLRSAGSYGRRL 1269 (1888)
Q Consensus 1197 ~eKEk~I~~L~~ek~e~e-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~g~~~~~-~~~s~~~~~~~~ 1269 (1888)
.+.+.++ ....+..+. .....++..+........+.+.... ....-+....++||++.. ++||++...++.
T Consensus 888 ~~~~i~~--~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~ 965 (1236)
T KOG1839|consen 888 KKRELQK--PARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVM 965 (1236)
T ss_pred Hhhhcch--hhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhh
Confidence 1111111 111111111 0001111111111111122222211 111224566799999964 599999999999
Q ss_pred ccccccccccccccccccccccccccccCCCCCCceeeccccccCCCC
Q 000187 1270 KQRRATIGKVHSYQKRNADAVIDYSSAKSSHHSSRYYLLKKRAVSHGS 1317 (1888)
Q Consensus 1270 ~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~ 1317 (1888)
+.++|.+++.|.+..+......||...++ ++.++++.+.|...--+
T Consensus 966 ~~~h~~~~~~~~~La~l~~~~~d~~~Ai~--~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 966 GVLHPEVASKYRSLAKLSNRLGDNQEAIA--QQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhcchhHHHHHHHHHHHHhhhcchHHHHH--hcccceeeechhccCCC
Confidence 99999999999999999999999988774 66788888888887533
No 4
>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135
Probab=99.97 E-value=3.3e-30 Score=282.43 Aligned_cols=147 Identities=35% Similarity=0.661 Sum_probs=130.9
Q ss_pred cCCCCCCCcchHHHHHHhcccccchhHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH
Q 000187 719 SLELSPVDGRTLTDFMHTRGLQMRSLGHVVKLS-EKLSHVQSLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNL 797 (1888)
Q Consensus 719 ~~~~~P~DG~sLt~~lH~rGINmRYLG~Va~l~-~~L~~l~~l~~~EMIaRAaKHIlRa~lr~l~~~~~la~AIsHfLNc 797 (1888)
++++.|+||.+|+++||++||||||||+|++++ ..+++++.||++|||+|++||+||.++|. .+...+..+|+|||||
T Consensus 2 ~~~~~p~Dg~~L~~~lH~~GIN~RyLG~v~~~~~~~~~~l~~l~~~EmiaR~~K~i~r~~l~~-~~~~~~~~~v~~~lN~ 80 (169)
T PF12807_consen 2 SLSVSPIDGQSLTEILHRRGINMRYLGKVAKLIKSSLPHLRRLCLQEMIARAAKHILREYLRS-VPQSELSSAVSHFLNC 80 (169)
T ss_pred CccccCcccHHHHHHHHHcCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchhhHHHHHHHHHHH
Confidence 567889999999999999999999999999986 46899999999999999999999999999 4778999999999999
Q ss_pred hhccccCCCCCCC-------------C----CCchhHHHHHHHHHHHhhccccCCCChh---hhhHHHHHHHHHHHhhhh
Q 000187 798 MLGVHESDGLNKS-------------H----NVHPLVWRWLELFLMKRYEWDLNGLNFK---DVRKFAILRGLCHKVGIE 857 (1888)
Q Consensus 798 LLG~~~~~~~~~~-------------~----~~~~~lw~~I~~~lk~rf~y~L~~~~~~---~l~klsLLReLc~klGIq 857 (1888)
|||...+...... . -....+|++|..+++.+|+|+++.+|.+ .+++++|||+||+++|||
T Consensus 81 llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~rf~y~l~~~~~~~~~~~~~~~LLR~ic~k~GiQ 160 (169)
T PF12807_consen 81 LLGSSSNSKPKKEKKEKNSNSKSKSDSSWSKLTPSSLWSEIEKEVKSRFRYELPEDWFDEKYGLQKIQLLREICQKTGIQ 160 (169)
T ss_pred hhCCCccccccccccchhccccccccchhhhcCcHHHHHHHHHHHHHhcCCcCchHHhhhhccccHHHHHHHHHHHhCeE
Confidence 9998776521100 0 0123699999999999999999999998 899999999999999999
Q ss_pred hhcccccCC
Q 000187 858 LVSRDFDMD 866 (1888)
Q Consensus 858 L~aR~Y~fd 866 (1888)
+.+|+|+|+
T Consensus 161 l~~r~Y~f~ 169 (169)
T PF12807_consen 161 LLARDYDFT 169 (169)
T ss_pred eeeecCCCC
Confidence 999999986
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.93 E-value=2.9e-24 Score=267.13 Aligned_cols=284 Identities=25% Similarity=0.299 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+|..|..+|+|+.|+.++++|+++....+|.+|+.++.++..+|.+|..+++|.+|+.+|++|+.+.+.++|.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 45555589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
|+.++.++.|||.+|...|+|++|..|+++|+.|.++.+|..|+.++..+.+++.++..++++++|+.+|+++++++...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCC
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L--~qka~e~AeAl~~~~~~~ 1130 (1888)
+|.+++.++.++.+||.+|..+|+|++|.+++++|+++.++..|..+..+...+..|+.. ..+.+..+..+.......
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888877777777643 334444444444433334
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
. .....+++.+...|.+|+.+|..+|+|++|+++.++++..+..-.
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 4 556788889999999999999999999999999999999988876
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.87 E-value=2.3e-20 Score=232.52 Aligned_cols=251 Identities=24% Similarity=0.269 Sum_probs=225.7
Q ss_pred cCCCCCChhHHHHhhhccchhhhcc-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000187 864 DMDSPSPFRKIDVVSLVPVHKQAAC-SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA 942 (1888)
Q Consensus 864 ~fdsa~~F~~eDIlnl~PvvK~~~~-~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA 942 (1888)
+|+.+.+.....+-. +.+.... ....+..+..+|..|..+++|.+|+.+|++||.+.+.++|.+|+.++.++.+||
T Consensus 214 ~~e~A~~l~k~Al~~---l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 214 RLEKAEPLCKQALRI---LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred cHHHHHHHHHHHHHH---HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 466666666554322 1122222 223344455689999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000187 943 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 1022 (1888)
Q Consensus 943 ~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~ 1022 (1888)
.+|+.+|+|++|..++++|+.|+++.+|..++.+...+.+++.++..++++++|+.+|++++.++....|.+|+.++.++
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000187 1023 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1023 ~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~t 1102 (1888)
.|||.+|..+|+|++|.++|++|+.+.++..|..+..+...+.+||..|.+++++.+|.+.|.++..|. ...|++|+.+
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~ 449 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDV 449 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCch
Confidence 999999999999999999999999999999999899999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000187 1103 QDAAAWLEYFESKAFE 1118 (1888)
Q Consensus 1103 l~a~~~La~L~qka~e 1118 (1888)
...+.+|+.++...+.
T Consensus 450 ~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHHHHHHccc
Confidence 9999999977654433
No 7
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=99.85 E-value=3.3e-22 Score=190.70 Aligned_cols=71 Identities=48% Similarity=0.804 Sum_probs=67.9
Q ss_pred cChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc----CceeEEeccCCCHHHHHHHHHHHHHHH
Q 000187 43 ISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK----PCVLSLTEEDFDEEGAAAHVRRVLDIV 115 (1888)
Q Consensus 43 is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk----~~~L~lVeepYter~Ar~Hvrrvrdll 115 (1888)
+++|+|+||||+|+++++||+||||+|.| +|++||||+||++++ ||+|+|||+|||+|+||+||+|+||||
T Consensus 2 ~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~--~g~~L~~~~el~~i~~~~~~~~L~lve~pYt~r~a~~Hv~r~rdli 76 (76)
T PF15044_consen 2 SPTDTVQDVRQVLAESPETCYLTNFSLEH--NGQRLDDFVELSEIEGIKDGCVLELVEEPYTEREAREHVRRVRDLI 76 (76)
T ss_pred ChhhHHHHHHHHHHhCccccceeEEEEEE--CCCccCCchhhhhhhCCCCCcEEEEEecCCCHHHHHHHHHHHHhhC
Confidence 46699999999999999999999999997 999999999999987 699999999999999999999999986
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=1.8e-19 Score=216.91 Aligned_cols=240 Identities=18% Similarity=0.129 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000187 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++++|.+|-..+.|++|+..|.+|+.+ .|..+.++.+||.+|+.+|+.+-|+..|++||++
T Consensus 249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----- 315 (966)
T KOG4626|consen 249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----- 315 (966)
T ss_pred CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc-----
Confidence 334677999999999999999999999999987 5777889999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|....+|+|||..+...|+..+|..+|.+||.++ |..+.+++|||.+|.++|.+++|..+|++|+++.
T Consensus 316 ---~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~ 384 (966)
T KOG4626|consen 316 ---QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF 384 (966)
T ss_pred ---CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC
Confidence 58888999999999999999999999999999974 3446778999999999999999999999999985
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcC
Q 000187 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGT 1127 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q--ka~e~AeAl~~~~ 1127 (1888)
+..+.++.+||.+|.++|++++|+.+|++|+.| .+...+++.+++..+. +.+..+.+.+..+
T Consensus 385 --------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 385 --------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred --------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 668899999999999999999999999999977 3455667776664444 3444443333322
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
. .-.+..++...+||.+|...|+..+|+..|+.+++++...-
T Consensus 449 I--------~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 449 I--------QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred H--------hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 2 22357889999999999999999999999999999987754
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=6.8e-19 Score=212.11 Aligned_cols=240 Identities=19% Similarity=0.156 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.|..+-++|..+..+|+...|+.+|++|+.+ +|..+.+|.+||.+|..++.|+.|+..|++|+.+
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l------- 281 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL------- 281 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-------
Confidence 3555667788999999999999999999987 6788899999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.|..+.++.|||.+|+.+|..+.|+..|++|+++ .|....+|+|||..+...|+..+|.++|.+||.++
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-- 350 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-- 350 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--
Confidence 5778899999999999999999999999999986 47778899999999999999999999999999986
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
+..+.+.++||.+|..+|.+++|..+|++|++++ +....+..+|+.++++++...+++......
T Consensus 351 ------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea-- 414 (966)
T KOG4626|consen 351 ------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEA-- 414 (966)
T ss_pred ------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHH--
Confidence 4567889999999999999999999999999875 344556677887877777766665432221
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
..-.+..++.|.++|.+|..+|+...|++.|.+|+.+.....
T Consensus 415 ----lrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A 456 (966)
T KOG4626|consen 415 ----LRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA 456 (966)
T ss_pred ----HhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH
Confidence 122347788999999999999999999999999999987764
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.66 E-value=9.6e-15 Score=190.64 Aligned_cols=247 Identities=14% Similarity=0.061 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000187 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++.+|++++|+.+|++++.+ +|....+|..+|.+|..+|++++|+.++++++.+
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----- 394 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL----- 394 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 345667888899999999999999999999986 4666789999999999999999999999999886
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|....+|+++|.+|+.+|++++|+.+|++++.+ .|.....+.++|.++..+|++++|+.+|+++++..
T Consensus 395 ---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 395 ---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3555678999999999999999999999999985 35566778999999999999999999999999763
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Q 000187 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGT 1127 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L--~qka~e~AeAl~~~~ 1127 (1888)
+....++..+|.+|..+|++++|+..|++|+.+.... ...+............+ ..+.++.+..+....
T Consensus 464 --------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 464 --------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred --------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3345678889999999999999999999999774321 11111211111111111 124444444443322
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.... +....++..+|.+|..+|++++|+.+|++++++..+..
T Consensus 535 l~l~--------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 535 LIID--------PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HhcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 1111 12234688899999999999999999999999987644
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.58 E-value=1.5e-13 Score=179.43 Aligned_cols=241 Identities=16% Similarity=0.127 Sum_probs=176.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHH--------------
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA-------------- 961 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKA-------------- 961 (1888)
++++|.+|+..|++++|+..+.+|+.+ .|....++..+|.+|..+|++++|+..+.++
T Consensus 163 ~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~ 234 (615)
T TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQA 234 (615)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHH
Confidence 566788888889999999999998876 4566678888999999999988887544332
Q ss_pred -------------------------------------------------------------------------------H
Q 000187 962 -------------------------------------------------------------------------------L 962 (1888)
Q Consensus 962 -------------------------------------------------------------------------------L 962 (1888)
+
T Consensus 235 ~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~ 314 (615)
T TIGR00990 235 VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAA 314 (615)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHH
Confidence 2
Q ss_pred HHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000187 963 DINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 963 ~I~Er~lG--~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
..+++.+. ...+....++.++|.++..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 22222221 124556677888999999999999999999999875 35667788899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHHHHH
Q 000187 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFE 1118 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~--L~qka~e 1118 (1888)
+|++++++. + ....+++.+|.+|..+|++++|+.+|++++.+ .+++... ...++. ...+.++
T Consensus 387 ~~~~al~~~-----p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~~~---~~~la~~~~~~g~~~ 450 (615)
T TIGR00990 387 DFDKALKLN-----S---EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFIFS---HIQLGVTQYKEGSIA 450 (615)
T ss_pred HHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCHHH---HHHHHHHHHHCCCHH
Confidence 999998762 2 33567888999999999999999999999865 3554433 223333 3333444
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000187 1119 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1119 ~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
.+......... ..+...+++..+|.++..+|++++|+.+|++++++....
T Consensus 451 eA~~~~~~al~--------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 451 SSMATFRRCKK--------NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HHHHHHHHHHH--------hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 44433322111 122345678999999999999999999999999987653
No 12
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.57 E-value=5.2e-14 Score=164.57 Aligned_cols=276 Identities=15% Similarity=0.119 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
.+...|.++|..|+..++|++|++|..--|.+.+.+ | +...-+.+..+||.++-.+|.|++|+.+..+-|.+++++
T Consensus 53 tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l-g-dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-- 128 (639)
T KOG1130|consen 53 TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL-G-DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-- 128 (639)
T ss_pred HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh-c-chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--
Confidence 345677888999999999999999998888776554 3 333446788999999999999999999999999998875
Q ss_pred CCChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGd--------------------yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~ 1030 (1888)
.|...-..+|+|||.+|+..|+ ++.|.++|..-|++.++. | +......+|-|||..|.
T Consensus 129 gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l-g-Dr~aqGRa~GnLGNTyY 206 (639)
T KOG1130|consen 129 GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL-G-DRLAQGRAYGNLGNTYY 206 (639)
T ss_pred hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh-h-hHHhhcchhcccCceee
Confidence 2445567899999999999876 456777888777777664 2 33445678999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000187 1031 GLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE 1110 (1888)
Q Consensus 1031 ~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La 1110 (1888)
-+|+|++|+.+.+.-|.+.++. | +....-.++.+||.+|.-+|+|+.|+++|+.++.+..+. |...... ++...|+
T Consensus 207 lLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~r~vEA-QscYSLg 282 (639)
T KOG1130|consen 207 LLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GNRTVEA-QSCYSLG 282 (639)
T ss_pred eeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cchhHHH-HHHHHhh
Confidence 9999999999999999998776 3 344556789999999999999999999999999888764 4332222 2222222
Q ss_pred --HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccC
Q 000187 1111 --YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 1178 (1888)
Q Consensus 1111 --~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q 1178 (1888)
|...+.++.+..+.+.-+ ..+....+.......++.||..|...|..++|+.+.++++++...+++
T Consensus 283 Ntytll~e~~kAI~Yh~rHL--aIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D 350 (639)
T KOG1130|consen 283 NTYTLLKEVQKAITYHQRHL--AIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVND 350 (639)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 223333443333322221 112222333455678999999999999999999999999999888773
No 13
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.54 E-value=7.9e-14 Score=163.09 Aligned_cols=240 Identities=17% Similarity=0.218 Sum_probs=192.7
Q ss_pred hhHHHHHHHHHHHhhh-hhhcccccCCCCCChhHHHHhhhccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000187 841 VRKFAILRGLCHKVGI-ELVSRDFDMDSPSPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKA 919 (1888)
Q Consensus 841 l~klsLLReLc~klGI-qL~aR~Y~fdsa~~F~~eDIlnl~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeA 919 (1888)
...+.+|.+|+.++|- ++..++| ..+..|...||. +.+........|+..-++|.++-..|.|++|+.++.+-
T Consensus 48 TeDl~tLSAIYsQLGNAyfyL~DY--~kAl~yH~hDlt----lar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rh 121 (639)
T KOG1130|consen 48 TEDLSTLSAIYSQLGNAYFYLKDY--EKALKYHTHDLT----LARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRH 121 (639)
T ss_pred chHHHHHHHHHHHhcchhhhHhhH--HHHHhhhhhhHH----HHHHhcchhccccccccccchhhhhcccchHHHHHHHH
Confidence 3466788889888883 3344444 555666666652 23444555566777778899999999999999999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 920 LAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD--------------------FNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 920 L~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd--------------------yeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
|.+.+++ .+...-+++|++||.+|...|+ ++.|.++|+.-|.+.++. .|......+
T Consensus 122 Ld~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa 197 (639)
T KOG1130|consen 122 LDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRA 197 (639)
T ss_pred hHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcch
Confidence 9998886 2344457899999999999875 456777888888887764 345556789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
|.|||..|+.+|+|+.|+.+.+.-|.|.+.. | +....-.++.|||.++.-+|+++.|+++|+.++.+..++ .+...
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel--g~r~v 273 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL--GNRTV 273 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh--cchhH
Confidence 9999999999999999999999999988774 4 234456789999999999999999999999999998877 34556
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000187 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
-+...+.||..|....++++|+.|.++-+.|.+..
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL 308 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL 308 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999998765
No 14
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2.4e-13 Score=168.74 Aligned_cols=246 Identities=11% Similarity=0.046 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH--------------------------HHHhcCCCChhHHHHHHHHHHHHHh
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAK--------------------------LVAVCGPYHRMTAGAYSLLAVVLYH 947 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l--------------------------~eqi~G~dhpe~A~ay~~LA~ly~~ 947 (1888)
..+.++|+.|++.++|++|..+|+.+-.+ +.+.+-...+.-..+|..+|.+|..
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhh
Confidence 56778899999999999999999887653 1111112345556789999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000187 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 1027 (1888)
Q Consensus 948 lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~ 1027 (1888)
+++++.|+..+++|+++ +|..+.+|..+|.=+..+.+||.|..+|+.||.+ .|..-.+|+.||.
T Consensus 434 Qkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGT 497 (638)
T ss_pred hhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhh
Confidence 99999999999999997 5778899999999999999999999999999975 4666789999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000187 1028 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1028 iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
+|.++++++.|+-+|++|+++. |....++..+|.+|.++|+.++|+.+|++|+. +.+.++..+.-..
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-----ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH-----LDPKNPLCKYHRA 564 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh-----cCCCCchhHHHHH
Confidence 9999999999999999999985 44455666789999999999999999999984 4666665544443
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1108 WLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1108 ~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+.... ..++.+....+.. ....+.-+.++..||.+|...|+++.|+..|--|+.+..+-.
T Consensus 565 ~il~~~-~~~~eal~~LEeL--------k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSL-GRYVEALQELEEL--------KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhh-cchHHHHHHHHHH--------HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 332222 1222221111111 111224456799999999999999999999999998877644
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.43 E-value=1.3e-11 Score=151.42 Aligned_cols=242 Identities=12% Similarity=0.042 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+...|..|..+...|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++... ...
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~ 102 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLT 102 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCC
Confidence 344555667777778888888888887765 34445677778888888888888888777766520 011
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.......+..||.+|...|++++|+.+|.+++.. ++....++..++.+|...|++++|+.+++++++....
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~- 173 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD- 173 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-
Confidence 1223356777788888888888888887777653 2344556777777777788888888777776654211
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCC
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~ 1130 (1888)
......+..+..+|.++...|++++|+.++++++++ .+++.. +...++ +...+..+.+.........
T Consensus 174 --~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~- 242 (389)
T PRK11788 174 --SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-----DPQCVR---ASILLGDLALAQGDYAAAIEALERVEE- 242 (389)
T ss_pred --cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-----CcCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 111123445566777777778888888777777654 233222 222222 2233333333332222110
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.+......++..++.+|...|++++|+.++++++++
T Consensus 243 ------~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 243 ------QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred ------HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 011123345666777777777777777777777665
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=4.5e-11 Score=132.79 Aligned_cols=170 Identities=22% Similarity=0.237 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.++++++.. +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 34677888999999999999999999999875 3555678999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+.....+.++|.+|...|++++|+.+|++++.. ..++.....+.++|.+|...|++++|+.+|+++++..
T Consensus 95 --~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 165 (234)
T TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID- 165 (234)
T ss_pred --CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 2344568899999999999999999999999873 2234456678889999999999999999999999863
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
++ ....+..+|.++...|++++|+.++++++.+
T Consensus 166 ----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 ----PQ---RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred ----cC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 2456778999999999999999999998876
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.41 E-value=2.9e-11 Score=148.33 Aligned_cols=242 Identities=14% Similarity=0.059 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..+..+|++++|+.++++++... .........++..||.+|..+|++++|+.++++++..
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-------- 136 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-------- 136 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------
Confidence 4567788999999999999999999887631 0111233468899999999999999999999998764
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
++....++..|+.+|...|++++|+.++++++.... ...+......+.++|.++...|++++|+.+|+++++..
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 210 (389)
T PRK11788 137 GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--- 210 (389)
T ss_pred CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC---
Confidence 345567889999999999999999999999876421 11122345567889999999999999999999999863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCC
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~ 1130 (1888)
+ ....++..+|.+|...|++++|+.++++++.. ++.+. ......+. +...+..+.+..........
T Consensus 211 --p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~--~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 211 --P---QCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYL--SEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred --c---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 23457788999999999999999999998864 22221 12222222 33334444443332221110
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000187 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.+ .. ..+..++.++...|++++|+.+++++++..
T Consensus 279 -----~p---~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 279 -----YP---GA-DLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred -----CC---Cc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 11 11 235789999999999999999999998874
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.39 E-value=4.1e-11 Score=157.67 Aligned_cols=247 Identities=13% Similarity=0.001 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI-------- 964 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I-------- 964 (1888)
...++.+|..+...|++++|+..|++++.+ .|....++..+|.+|..+|++++|+..+++++..
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 344677788899999999999999999876 3455567788888888888888888877765432
Q ss_pred ------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000187 965 ------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 965 ------------------~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
+++.+..+.......+..++.++...|++++|+..|.+++.+ +|....++.++|
T Consensus 182 ~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg 253 (656)
T PRK15174 182 ATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLG 253 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHH
Confidence 111111111111122344566777777788887777777763 355567788899
Q ss_pred HHHHHCCCHHH----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000187 1027 MMEEGLGNVHV----ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1027 ~iy~~lG~yee----Ale~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~t 1102 (1888)
.+|..+|++++ |+.+|++++++. |....++.++|.+|...|++++|+.++++++++ .+++...
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~--------P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~a 320 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFN--------SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPYV 320 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH
Confidence 99999999986 788898888763 345677888999999999999999999998864 5666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1103 QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1103 l~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
...+. ..+...+.++.+.......... .+.....+..+|.++...|++++|+.+|++++++.....
T Consensus 321 ~~~La-~~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 321 RAMYA-RALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHH-HHHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 33322 2233344444444333221111 112223566678899999999999999999999977754
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=8.8e-11 Score=140.51 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=161.1
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000187 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
+..+.++..+.++|.... .+....+..|+.+|.+|..+|++++|+..|++|+.+ .|....+|+++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 355667777777775421 233455789999999999999999999999999986 46678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000187 987 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 1066 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~n 1066 (1888)
|...|++++|+..|.+++++ .|+...++.++|.+|...|++++|+..|++++++. ++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH--
Confidence 99999999999999999986 35556789999999999999999999999999864 444421 112
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCchhhhhcCCccHHH
Q 000187 1067 IAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT--RKPDASIASKGHLSVSD 1144 (1888)
Q Consensus 1067 LA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~--~~~~~~~as~~~~svae 1144 (1888)
..++...+++++|+..+.++... +.++.... .+.++..+....++++.... ....... .+...+
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~----~~~~~~~~-----~~~~~~lg~~~~~~~~~~~~~~~~~~~~l----~~~~~e 237 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEK----LDKEQWGW-----NIVEFYLGKISEETLMERLKAGATDNTEL----AERLCE 237 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhh----CCccccHH-----HHHHHHccCCCHHHHHHHHHhcCCCcHHH----HHHHHH
Confidence 22345578899999999776532 12222111 12222222222222221111 1111111 124567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1145 LLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1145 lL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.|+++|.+|..+|++++|+.+|++++++..
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999998763
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.34 E-value=9.8e-11 Score=154.15 Aligned_cols=244 Identities=12% Similarity=0.036 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|...+..|++++|+..|++++.+ +|....++..+|.+|..+|++++|+..+++++.+
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l-------- 139 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA-------- 139 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 445677788888999999999999999987 5666778999999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcCCCChhHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL--------------------------HLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~--------------------------~ki~G~dhP~~a~a~~NLA 1026 (1888)
.|....++..+|.++...|++++|+..+++++... ......+.+.....+..++
T Consensus 140 ~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~ 219 (656)
T PRK15174 140 FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAV 219 (656)
T ss_pred CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHH
Confidence 35556678888888999999999888887665421 0000000001111223446
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH----HHHHHHHHHHHHHHhcCCCCHHH
Q 000187 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL----SVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyde----Ale~lqkALeI~kk~LG~dh~~t 1102 (1888)
.+|...|++++|+..|+++++.. +....+++++|.+|..+|++++ |+.++++++++ .+++...
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a 286 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG--------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRI 286 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHH
Confidence 66777777777777777777642 2345677788999999999885 78888877754 3565544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1103 QDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1103 l~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
...+..+ ++..+..+.+.......... .+....++..+|.+|..+|++++|+..|++++....
T Consensus 287 ~~~lg~~-l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 287 VTLYADA-LIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 4333322 23333444443332221111 123345678899999999999999999999887643
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.33 E-value=1.2e-10 Score=154.92 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-------
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------- 964 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I------- 964 (1888)
....++..|..++.+|++++|+..+++++.. +|....+++.+|.+|..+|++++|+..+++++..
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 92 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQV 92 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhh
Confidence 4566788899999999999999999999976 4566679999999999999999999999988753
Q ss_pred --------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000187 965 --------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024 (1888)
Q Consensus 965 --------------------~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~N 1024 (1888)
+++....+.+.....+..+|.+|...|++++|+.+|++++.. +|....++..
T Consensus 93 ~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~ 164 (899)
T TIGR02917 93 LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLG 164 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHH
Confidence 111112244556677888999999999999999999998864 2344556788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000187 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 1103 (1888)
Q Consensus 1025 LA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl 1103 (1888)
+|.++...|++++|+.+++++++.. + ....++..+|.++...|++++|+..+++++.+ .+.+....
T Consensus 165 la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~ 230 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDEVLTAD-----P---GNVDALLLKGDLLLSLGNIELALAAYRKAIAL-----RPNNPAVL 230 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-----C---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCCHHHH
Confidence 8999999999999999999887752 2 23456777888999999999999999888754 45554443
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=8e-11 Score=131.78 Aligned_cols=168 Identities=20% Similarity=0.159 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000187 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+...+++|.-|+.+|++..|..-+++||+. +|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 344778889999999999999999999999987 6777889999999999999999999999999997
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|.....++|.|.+++.+|+|++|..+|.+|+. .+..+....++-|+|.|-.+.|+++.|..+|+++|++.
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 577888999999999999999999999999997 36666778899999999999999999999999999985
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000187 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
++.......++..+...|+|..|..+++.-
T Consensus 170 --------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 170 --------PQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred --------cCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 333455667899999999999998887643
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.31 E-value=1.1e-10 Score=162.82 Aligned_cols=241 Identities=14% Similarity=0.085 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+..+|..+...|++++|+.+|++++.+ +|....+++.||.+|..+|++++|+..+++++.. +
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--------~ 525 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--------K 525 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence 45667899999999999999999999987 4555668899999999999999999999999875 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------------------------HHHHHhcCCCCh
Q 000187 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRAL-------------------------------------YLLHLTCGPSHP 1016 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kAL-------------------------------------eL~~ki~G~dhP 1016 (1888)
|.....++.+|.++...+++++|+.+++++. .+++ .+|
T Consensus 526 P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p 600 (1157)
T PRK11447 526 PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQP 600 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCC
Confidence 4445566777888888888888888776531 1111 234
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000187 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
.....+.++|.+|..+|++++|+.+|+++++.. + ....++..+|.+|...|++++|+.+++++++. .
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-----P---~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-----~ 667 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-----P---GNADARLGLIEVDIAQGDLAAARAQLAKLPAT-----A 667 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----C
Confidence 445567889999999999999999999999863 3 34567889999999999999999999977643 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1097 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1097 ~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
+++........+ .+...+..+.+..+.......... .......+.++..+|.++..+|++++|+.+|++|+.
T Consensus 668 p~~~~~~~~la~-~~~~~g~~~eA~~~~~~al~~~~~--~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVAL-AWAALGDTAAAQRTFNRLIPQAKS--QPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHH-HHHhCCCHHHHHHHHHHHhhhCcc--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556554443333 233444555555444432211100 000112345677789999999999999999999975
No 24
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.1e-10 Score=137.89 Aligned_cols=216 Identities=16% Similarity=0.161 Sum_probs=166.3
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000187 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly 987 (1888)
++.+|..|...|+.+ +...+.++.+-|.+.+..|++++|.++|++||.- +.....+++|+|+.+
T Consensus 471 ~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~ 534 (840)
T KOG2003|consen 471 DFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTA 534 (840)
T ss_pred chhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccH
Confidence 578888888888776 3455678888999999999999999999999863 456778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000187 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067 (1888)
Q Consensus 988 ~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nL 1067 (1888)
..+|++++|+.+|.+.-.++.. .+.++..+|.+|..+.+..+|+++|-++..+. ++.| .++..|
T Consensus 535 e~~~~ldeald~f~klh~il~n--------n~evl~qianiye~led~aqaie~~~q~~sli-----p~dp---~ilskl 598 (840)
T KOG2003|consen 535 EALGNLDEALDCFLKLHAILLN--------NAEVLVQIANIYELLEDPAQAIELLMQANSLI-----PNDP---AILSKL 598 (840)
T ss_pred HHhcCHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----CCCH---HHHHHH
Confidence 9999999999999987776532 46788899999999999999999999887664 4444 457788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHH
Q 000187 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDL 1145 (1888)
Q Consensus 1068 A~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svael 1145 (1888)
|.+|-+.|+-.+|.+++-.++..| +..++...||+ |+..+-.+.+..+.+.+ ..-.+.....
T Consensus 599 ~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayyidtqf~ekai~y~eka--------aliqp~~~kw 662 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYYIDTQFSEKAINYFEKA--------ALIQPNQSKW 662 (840)
T ss_pred HHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHHHhhHHHHHHHHHHHHH--------HhcCccHHHH
Confidence 999999999999999887777554 33455667776 33444444444443322 2223455566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1146 LDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1146 L~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
..+++.++++.|+|.+|+..|+...+
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 78899999999999999999976543
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.31 E-value=3e-10 Score=158.46 Aligned_cols=172 Identities=17% Similarity=0.047 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-----------AGAYSLLAVVLYHTGDFNQATIYQQKA 961 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~-----------A~ay~~LA~ly~~lGdyeeAl~~~eKA 961 (1888)
...++.+|.+++.+|++++|+.+|++++.+. +++... ...+..+|.++...|++++|+.+|+++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~A 377 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQA 377 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5667888999999999999999999999863 222211 112345688999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-----------------------
Q 000187 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT----------------------- 1018 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~----------------------- 1018 (1888)
+.+ +|....++.+||.+|..+|++++|+++|++++.+. +++...
T Consensus 378 l~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 378 RQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 987 35556788999999999999999999999999752 111110
Q ss_pred ----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 000187 1019 ----------------AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 1082 (1888)
Q Consensus 1019 ----------------a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle 1082 (1888)
...+..+|.++...|++++|+.+|++++++. +++ ..+++.+|.+|..+|++++|+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~~---~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PGS---VWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHH
Confidence 1234456778888999999999999999874 333 4567889999999999999999
Q ss_pred HHHHHHHH
Q 000187 1083 HEQTTLQI 1090 (1888)
Q Consensus 1083 ~lqkALeI 1090 (1888)
.++++++.
T Consensus 517 ~l~~al~~ 524 (1157)
T PRK11447 517 LMRRLAQQ 524 (1157)
T ss_pred HHHHHHHc
Confidence 99998753
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.2e-10 Score=140.03 Aligned_cols=246 Identities=15% Similarity=0.070 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..|+..|..++-.|++..|.+.|.+++.+ ++.....|..+|.+|....+.++....|.+|..+
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------ 389 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------ 389 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc------
Confidence 44788888999999999999999999999987 3444445889999999999999999999999887
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+|.....|++-|.+++-+++|++|+.-|++|+.+ .|..+..|..++.++.++++++++...|+++.+.+
T Consensus 390 --dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF- 458 (606)
T KOG0547|consen 390 --DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF- 458 (606)
T ss_pred --CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 5667788999999999999999999999999986 47788999999999999999999999999998765
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~d-h~~tl~a~~~La~L~qka~e~AeAl~~~~~~ 1129 (1888)
|....+|...|+++..+++|++|++.|..|+.+-....+.. ....+.....+..-..+....+..+...+..
T Consensus 459 -------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e 531 (606)
T KOG0547|consen 459 -------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE 531 (606)
T ss_pred -------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence 44556777889999999999999999999997644311110 1111111111111112344444444333322
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000187 1130 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
.+ +.-...+..||.+...+|+.++|+++|++++.+..+.
T Consensus 532 ~D--------pkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 532 LD--------PKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred cC--------chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 22 2334578889999999999999999999999987764
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.6e-10 Score=135.50 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=162.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
|..|-..++-++|+.||++||.+ +|....+|..+|.-|..+.+...|+..|+.|+++. |.--.+
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRA 400 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRA 400 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHH
Confidence 56666778899999999999988 77888999999999999999999999999999984 556789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
++.||..|..++-..=|+-||++|+.+ .+++ ...+..||.||..+++.++|+.+|.+|+.... .
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~-----kPnD---sRlw~aLG~CY~kl~~~~eAiKCykrai~~~d--------t 464 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALEL-----KPND---SRLWVALGECYEKLNRLEEAIKCYKRAILLGD--------T 464 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhc-----CCCc---hHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--------c
Confidence 999999999999999999999999985 3444 45566789999999999999999999998741 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000187 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA 1122 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeA 1122 (1888)
...++..||.+|..++++.+|.++|.+.++.. ..-|...+.+..+..||+....+..+..++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 34678899999999999999999999999877 455778888889999988766655544443
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=6e-10 Score=123.82 Aligned_cols=206 Identities=20% Similarity=0.182 Sum_probs=153.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
....+..+.++|.+|+..|++++|+.++++++.. +|....++..+|.+|..+|++++|+.+|++++.+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---- 94 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---- 94 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Confidence 3445788999999999999999999999999875 3556788899999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
. |.....+.++|.+|...|++++|+.+|++++... ........+..+|.+|...|++++|..++++++.+
T Consensus 95 -~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 95 -N---PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -C---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 3334678899999999999999999999998742 22334566788999999999999999999999865
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1091 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
.+++......+..+ +...+..+.+.......... .+.....+..++.++...|+.++|..+.+.+.
T Consensus 165 -----~~~~~~~~~~la~~-~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 165 -----DPQRPESLLELAEL-YYLRGQYKDARAYLERYQQT--------YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred -----CcCChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444333222222 33334444443332221110 01223456678889999999999999988766
Q ss_pred HH
Q 000187 1171 KV 1172 (1888)
Q Consensus 1171 eL 1172 (1888)
.+
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 54
No 29
>PF05303 DUF727: Protein of unknown function (DUF727); InterPro: IPR007967 This family consists of several uncharacterised eukaryotic proteins of unknown function.; PDB: 1SGO_A.
Probab=99.27 E-value=4.8e-12 Score=128.86 Aligned_cols=63 Identities=24% Similarity=0.366 Sum_probs=50.1
Q ss_pred CCceEEEEEEEeCCceEEEEEeccceeecCC--------------CccccchHHHHHhhhcHHHHHHHHHHHHHhhc
Q 000187 216 DDHLLSLDVKLCNGKMVNVEACRKGFYSVGK--------------QRILCHNIVDLLGQLSRAFDNAYNELMNAFSE 278 (1888)
Q Consensus 216 ~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~--------------~~~~~HsLv~LL~~iSp~F~~~f~~l~k~~~~ 278 (1888)
.|||+||+|+|+||+.||||+|++||||++. ....+|||.+||++|||.|++.|...+..+.+
T Consensus 29 ~~~l~Ylnv~TlEg~~~cIelt~~Gf~V~s~~~D~~~~~~~~~~~~~~~~eTl~~LL~~iSP~fr~~F~~~L~~kL~ 105 (108)
T PF05303_consen 29 TGDLIYLNVTTLEGRTYCIELTTKGFRVVSSTFDCMDPDPSQSSLHTKYFETLYALLDSISPLFRKRFGEKLSQKLE 105 (108)
T ss_dssp ETTEEEEEEE-TT--EEEEEEETTEEEEEESSTT---TT---------EESSSHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEecCCEEEEEEECCeEEEeeecCCCcCcccccccccchHHhhHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999733 12367999999999999999999987776543
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.26 E-value=7.7e-10 Score=147.31 Aligned_cols=235 Identities=18% Similarity=0.226 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..+...|++++|+.+|++++.. +|....++..++.+|...|++++|+.++++++.. +
T Consensus 500 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~ 563 (899)
T TIGR02917 500 PAAANLARIDIQEGNPDDAIQRFEKVLTI--------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL--------N 563 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34556677777777777777777777664 2334456777788888888888888887777664 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000187 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
+.....+..++.+|...|++++|+.++++++.. +|....++..+|.+|...|++++|+.+|+++++..
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---- 631 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---- 631 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 344556777888888888888888888887653 23344667888999999999999999999888753
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000187 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 1133 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~ 1133 (1888)
++ ....+..+|.+|...|++++|+.++++++.+ .+++.........+ +...+..+.+..+......
T Consensus 632 -~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~---- 697 (899)
T TIGR02917 632 -PD---SALALLLLADAYAVMKNYAKAITSLKRALEL-----KPDNTEAQIGLAQL-LLAAKRTESAKKIAKSLQK---- 697 (899)
T ss_pred -CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh----
Confidence 22 3456778899999999999999999888754 35554433222222 2333344444333322110
Q ss_pred hhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1134 ~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
..+.....+..+|.+|...|++++|+.+|++++....
T Consensus 698 ----~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~ 734 (899)
T TIGR02917 698 ----QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734 (899)
T ss_pred ----hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Confidence 1112334677788888889999999999988887643
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=5.6e-10 Score=144.50 Aligned_cols=237 Identities=12% Similarity=0.035 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc---------CCHHHHHHHH
Q 000187 891 ADGRQLLESSKTALDK---GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIYQ 958 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~q---Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l---------GdyeeAl~~~ 958 (1888)
.++..++..|..++.. +.+++|+.+|++|+++ +|..+.+|..||.+|..+ +++++|+.++
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 3455667677666544 3467899999999876 566677888899887644 3488999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 000187 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 1038 (1888)
Q Consensus 959 eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeA 1038 (1888)
++|+.+ .|....++..+|.++..+|++++|+.+|++|+.+ .|..+.+++++|.+|...|++++|
T Consensus 328 ~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 328 IKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 999886 4666788999999999999999999999999986 355566789999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Q 000187 1039 LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFE 1118 (1888)
Q Consensus 1039 le~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e 1118 (1888)
+.+|++|+++. +.++ ..++.++.++...|++++|+..+++++.. ..++++.....+. ..+...+..+
T Consensus 392 i~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~----~~p~~~~~~~~la-~~l~~~G~~~ 458 (553)
T PRK12370 392 LQTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQ----HLQDNPILLSMQV-MFLSLKGKHE 458 (553)
T ss_pred HHHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHh----ccccCHHHHHHHH-HHHHhCCCHH
Confidence 99999999874 3332 23344566677799999999999887643 1344444222221 2233345555
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1119 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1119 ~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.+.......... .+.-......++..|..+|+ +|...+++.++..+
T Consensus 459 eA~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~ 504 (553)
T PRK12370 459 LARKLTKEISTQ--------EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHHhhhc--------cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhh
Confidence 555443322111 11223456677777777774 77777777665444
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.24 E-value=4.7e-10 Score=151.89 Aligned_cols=236 Identities=17% Similarity=0.063 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|.++.. |+..+|+..+.+++... |.. .....+|.++...|++++|+.++++++.. .
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~ 539 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH------D 539 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------C
Confidence 46678888988887 89999999999998762 322 23566788888999999999999987443 1
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+ ....+.++|.++...|++++|+.+|++++.+ +|.....+..++..+..+|++++|+.+|++++++.
T Consensus 540 --p-~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 540 --M-SNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred --C-CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 1 1234678899999999999999999999874 23444555567777778899999999999999874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
+ . ...+.++|.++..+|++++|+.++++++.+ .|++......+.+. +...+..+.+........
T Consensus 607 ---P---~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~~a~~nLG~a-L~~~G~~eeAi~~l~~AL--- 670 (987)
T PRK09782 607 ---P---S-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNSNYQAALGYA-LWDSGDIAQSREMLERAH--- 670 (987)
T ss_pred ---C---C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHH---
Confidence 2 2 567899999999999999999999999965 57777544333322 222333444433332221
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
...+....++.++|.+|..+|++++|+.+|++++++.....
T Consensus 671 -----~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 671 -----KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA 711 (987)
T ss_pred -----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence 11224457899999999999999999999999999886543
No 33
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.24 E-value=7.2e-10 Score=127.30 Aligned_cols=177 Identities=19% Similarity=0.232 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+..|++++... +.++....++..+|.+|+.+|++++|+..+++++... +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----P 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----c
Confidence 36788999999999999999999999998762 4556666789999999999999999999999999863 4
Q ss_pred CChhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------HHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRL--------QHTELALKYVKRALYLLHLTCGPSHPNTAA--------------TYINVAMME 1029 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~l--------GdyeeALey~~kALeL~~ki~G~dhP~~a~--------------a~~NLA~iy 1029 (1888)
+++....+++.+|.++... |++++|+.+|++++... ++++.... ....+|.+|
T Consensus 102 ~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 102 NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667889999999886 88999999999998752 33332221 124688999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1030 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1030 ~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
...|++.+|+..|+++++.+ ++++....+++.+|.+|..+|++++|..+++...
T Consensus 177 ~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999875 5567788999999999999999999999876543
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=4e-10 Score=145.89 Aligned_cols=220 Identities=12% Similarity=0.019 Sum_probs=153.6
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000187 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
..+++++|+.++++|+++ +|..+.++..+|.++..+|++++|+.+|++|+.+ .|....+++++|
T Consensus 316 ~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg 379 (553)
T PRK12370 316 KQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYG 379 (553)
T ss_pred cchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 345689999999999987 5666778999999999999999999999999987 466677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 000187 985 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al 1064 (1888)
.+|..+|++++|+.++++|+.+ .+.++ ..+..++.++...|++++|+.+++++++.. .+.....+
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l-----~P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~ 444 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKL-----DPTRA---AAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILL 444 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc-----CCCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHH
Confidence 9999999999999999999986 33333 334446667778999999999999987652 12344567
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHH
Q 000187 1065 HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSD 1144 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svae 1144 (1888)
.++|.+|..+|++++|...+++.... .+....+...++..+.+..+.+.+......... . ....
T Consensus 445 ~~la~~l~~~G~~~eA~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~-~-~~~~------ 508 (553)
T PRK12370 445 SMQVMFLSLKGKHELARKLTKEISTQ--------EITGLIAVNLLYAEYCQNSERALPTIREFLESE-Q-RIDN------ 508 (553)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhhc--------cchhHHHHHHHHHHHhccHHHHHHHHHHHHHHh-h-Hhhc------
Confidence 88999999999999999998765422 222222333333333333333333221111000 0 0110
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1145 LLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1145 lL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
-...+..+|.-+|+-+.|..+ +++.+-
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 123367777778888888777 555443
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=1.3e-10 Score=144.75 Aligned_cols=226 Identities=17% Similarity=0.133 Sum_probs=164.7
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------H----------------Hhc
Q 000187 916 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----------E----------------REL 969 (1888)
Q Consensus 916 ~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~----------E----------------r~l 969 (1888)
+++|+..++. +...|..+..++.++|.+|+.+++|++|..+|+.+-.+. - +.+
T Consensus 335 ~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444444 233466777899999999999999999999998863321 1 111
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
-..+++...+|+-+|.||..+++++.|+++|+||+.+ +|..+.+|.-+|-=+....+||.|..+|++||.+.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 1234555677899999999999999999999999986 57778888889999999999999999999999874
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHhcC
Q 000187 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY--FESKAFEQQEAARNGT 1127 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~--L~qka~e~AeAl~~~~ 1127 (1888)
+..-.+|+-||.+|.++++++.|.-+|++|++| .|.. ......+.. ...+..+++..+...+
T Consensus 486 --------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I-----NP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 486 --------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI-----NPSN---SVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred --------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC-----Cccc---hhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 334578999999999999999999999999976 2333 333333333 3344444444444433
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
...+. + +. -..+..+.++...++|.+|+..+++..++..
T Consensus 550 ~~ld~----k---n~-l~~~~~~~il~~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 550 IHLDP----K---NP-LCKYHRASILFSLGRYVEALQELEELKELVP 588 (638)
T ss_pred HhcCC----C---Cc-hhHHHHHHHHHhhcchHHHHHHHHHHHHhCc
Confidence 32221 1 11 1346778888999999999999998776543
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=7.7e-10 Score=124.07 Aligned_cols=210 Identities=17% Similarity=0.165 Sum_probs=160.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000187 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
++...+.++..||.-|+..|++..|...++|||++ +|....++.-+|.+|..+|+.+.|.+.|++|+.+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--- 98 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--- 98 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---
Confidence 34456788999999999999999999999999997 6778899999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+|....+++|.|+.+..+|++++|..+|++|+.. +.....+.++.|+|.|..++|+++.|..+|+++++
T Consensus 99 -----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 -----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 5777899999999999999999999999999875 55666788999999999999999999999999996
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000187 1090 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1090 I~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
+ .++.+.....+..+.+. .+.+-.+..+...... ... ..++.+.....+....|+-+.|..|-.+.
T Consensus 168 ~-----dp~~~~~~l~~a~~~~~-~~~y~~Ar~~~~~~~~-------~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 168 L-----DPQFPPALLELARLHYK-AGDYAPARLYLERYQQ-------RGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred h-----CcCCChHHHHHHHHHHh-cccchHHHHHHHHHHh-------ccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5 35544444333333222 2222223222221100 000 22344555566677889999888887666
Q ss_pred HHHhcc
Q 000187 1170 AKVKGN 1175 (1888)
Q Consensus 1170 LeL~dS 1175 (1888)
.+....
T Consensus 234 ~r~fP~ 239 (250)
T COG3063 234 QRLFPY 239 (250)
T ss_pred HHhCCC
Confidence 655443
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.21 E-value=9.5e-10 Score=148.96 Aligned_cols=232 Identities=15% Similarity=-0.001 Sum_probs=177.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
.+.+|..+...|++++|+.+|++++.. .+. ...+..+|.++...|++++|+.++++++.. +|.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~ 574 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLG 574 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCc
Confidence 555677788999999999999987543 111 234678899999999999999999999875 244
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
....+..++..+...|++++|+.+|++|+.+ .|. ...+.++|.++..+|++++|+.+|++++++.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------ 639 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE------ 639 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------
Confidence 4555666777777889999999999999975 244 6788999999999999999999999999874
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhh
Q 000187 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIA 1135 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~a 1135 (1888)
|....++.++|.++...|++++|+.+|++|+++ .|+++.....+.++ +...+..+.+...........
T Consensus 640 --Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-----~P~~~~a~~nLA~a-l~~lGd~~eA~~~l~~Al~l~---- 707 (987)
T PRK09782 640 --PNNSNYQAALGYALWDSGDIAQSREMLERAHKG-----LPDDPALIRQLAYV-NQRLDDMAATQHYARLVIDDI---- 707 (987)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcC----
Confidence 344578899999999999999999999999965 57777655444443 344445555554443332221
Q ss_pred hcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1136 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1136 s~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
+..+.+...+|.+...+.+++.|.+.|.++..+...
T Consensus 708 ----P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 708 ----DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred ----CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 244556778888888888888888888888776544
No 38
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.19 E-value=5e-09 Score=142.84 Aligned_cols=271 Identities=13% Similarity=0.009 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.....|..++..|++++|..++++++..... ......+.++..+|.++...|++++|..++++++...++. |. ..
T Consensus 454 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~-~~ 528 (903)
T PRK04841 454 FNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DV-YH 528 (903)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cc-hH
Confidence 3344678888999999999999999875221 1222245677889999999999999999999999988763 32 23
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
....++.++|.++..+|++++|..++.+++.+.....+..++....++..+|.++...|++++|..++++++.+.... +
T Consensus 529 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~ 607 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q 607 (903)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C
Confidence 345678999999999999999999999999998876554555555667789999999999999999999999987643 2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH------------------H----------
Q 000187 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA------------------A---------- 1106 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a------------------~---------- 1106 (1888)
....+.++..+|.++...|++++|..++.++..++... + .+...... .
T Consensus 608 --~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~ 683 (903)
T PRK04841 608 --PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE 683 (903)
T ss_pred --chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC
Confidence 22345677789999999999999999999998875442 1 11100000 0
Q ss_pred -----------HHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000187 1107 -----------AWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1107 -----------~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
..++ +...+..+.+......... .............++..+|.+|..+|++++|..++.+|+++.
T Consensus 684 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~--~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 684 FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE--NARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 0011 1111112222111111100 011112222455678888999999999999999999999988
Q ss_pred cccc
Q 000187 1174 GNFY 1177 (1888)
Q Consensus 1174 dSi~ 1177 (1888)
...+
T Consensus 762 ~~~g 765 (903)
T PRK04841 762 NRTG 765 (903)
T ss_pred Cccc
Confidence 7655
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.3e-10 Score=138.83 Aligned_cols=209 Identities=19% Similarity=0.174 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+-.++..|..|+..|++.+|..||.+|-.+ ++..+.+|..+|..|...|+.++|+..|..|-++.. |
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~---G-- 378 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP---G-- 378 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc---C--
Confidence 344566678888999999999999999876 667788999999999999999999999999988753 2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.-.-+..||.-|.+.++++.|.++|.+|+.++ +.+ ..+++.+|.+....+.|.+|..+|+.++...+..
T Consensus 379 ---~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----P~D---plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 379 ---CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----PSD---PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred ---CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-----CCc---chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 22345678999999999999999999999974 334 4567889999999999999999999999766555
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
+...+.+.-++.|||.+|.+++.+++|+.++++|+.+ .+.+
T Consensus 448 -~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-----~~k~--------------------------------- 488 (611)
T KOG1173|consen 448 -LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-----SPKD--------------------------------- 488 (611)
T ss_pred -cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-----CCCc---------------------------------
Confidence 4445567888999999999999999999999999843 2222
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1133 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1133 ~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.+++..+|.+|..+|+.+.|+.+|.+||.+..
T Consensus 489 ----------~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 489 ----------ASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred ----------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 23466677788888888888888888887654
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=5e-09 Score=125.57 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..+...|++++|+..|++++.+ +|..+.+|.++|.+|..+|++++|+..|++|+.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------ 127 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------ 127 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 34677999999999999999999999999986 4666789999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.|+...++.++|.+++..|++++|+..|++++.+ .++++.. ..+ ..++...+++++|+..|.+++....
T Consensus 128 --~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 128 --DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhCC
Confidence 4666788999999999999999999999999975 3444421 111 1233456778888888866553210
Q ss_pred ----------HhcCCC-------------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1051 ----------RLLGPD-------------------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1051 ----------k~~G~d-------------------~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
-..|.. .+....+|++||.+|..+|++++|+.+|++|+++
T Consensus 197 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 197 KEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred ccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 011111 1123467999999999999999999999999854
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.2e-09 Score=129.32 Aligned_cols=238 Identities=16% Similarity=0.159 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG--dyeeAl~~~eKAL~I~Er~lG 970 (1888)
...-...|..++.+|+++.|++.+. .++. .++.....+-.+|..+++.+| ++.+|..|...|+.+
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilk----v~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------ 485 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILK----VFEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------ 485 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHH----HHHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------
Confidence 3344566788899999999987653 2222 344555567788999988865 788898999988876
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+...+.++.|-|.+-+..|++++|.+.|+.||. ++.....+++|+|..+..+|++++|+++|-+.-.+.
T Consensus 486 --dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il- 554 (840)
T KOG2003|consen 486 --DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL- 554 (840)
T ss_pred --cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-
Confidence 234567788999999999999999999999985 455677899999999999999999999999888776
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
...+..++++|.+|..+.+..+|++++.++..+ -++++..+.- |+.++.+.++..+++......
T Consensus 555 -------~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~ilsk---l~dlydqegdksqafq~~yds- 618 (840)
T KOG2003|consen 555 -------LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAILSK---LADLYDQEGDKSQAFQCHYDS- 618 (840)
T ss_pred -------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHHHHH---HHHHhhcccchhhhhhhhhhc-
Confidence 346788999999999999999999999888744 4888876544 455555555555444321110
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
-..-+...++..+||..|....-.++|+.||++|.-+...
T Consensus 619 -----yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 619 -----YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred -----ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 0112244567788999999999999999999998766443
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=2.8e-08 Score=120.19 Aligned_cols=195 Identities=18% Similarity=0.159 Sum_probs=157.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
|..+|..|.++.+-++....|.+|..+ +|+...+|+..|.+++.+++|++|+.-|++|+.+ .|+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe 426 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPE 426 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------Chh
Confidence 778899999999999999999999887 5666679999999999999999999999999987 588
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
.+.+|..|+...+++++++++...|+.+..- .|....+|+..|.++..+++|++|++.|..|+++-....+.
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK--------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 8999999999999999999999999999874 37777889999999999999999999999999986543211
Q ss_pred CcHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000187 1056 DHIQTAASYHAIAIAL-SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 1124 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay-~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~ 1124 (1888)
+. .+..+..-|.+. .-.+++..|++++++|+++ +++.-.+...|+++..++....+++.
T Consensus 499 -~v-~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 499 -IV-NAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred -cc-cchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 11 122222223222 2348999999999999854 56666777788877777666666553
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.8e-09 Score=129.61 Aligned_cols=240 Identities=13% Similarity=0.149 Sum_probs=173.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH----------H-----------------HHhcCCCChhHHHHHHHHHHHHHhcCCHH
Q 000187 900 SKTALDKGKLEDAVTYGTKALAK----------L-----------------VAVCGPYHRMTAGAYSLLAVVLYHTGDFN 952 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l----------~-----------------eqi~G~dhpe~A~ay~~LA~ly~~lGdye 952 (1888)
|.+.+.+.++++|+..|++.+.. + +.++ ..+.........+|..|...++.+
T Consensus 269 A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 269 AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHH
Confidence 45666778888888888887652 0 0000 011112223455677888889999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000187 953 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 953 eAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
.|+.||++||.+ +|....++..+|.=|..+.+...|+..|++|+++. |..-.+++.||.+|.-+
T Consensus 348 KAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 348 KAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------PRDYRAWYGLGQAYEIM 411 (559)
T ss_pred HHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------chhHHHHhhhhHHHHHh
Confidence 999999999997 57788899999999999999999999999999973 56678999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000187 1033 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 1112 (1888)
Q Consensus 1033 G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L 1112 (1888)
+-..-|+-||++|+++. |.....+..||.+|.++++.++|+.+|+.|+.. |... ..++..|+.+
T Consensus 412 ~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-----~dte---~~~l~~LakL 475 (559)
T KOG1155|consen 412 KMHFYALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-----GDTE---GSALVRLAKL 475 (559)
T ss_pred cchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----cccc---hHHHHHHHHH
Confidence 99999999999999874 334567788899999999999999999999853 3322 2345556666
Q ss_pred HHHHHHHHHHHHhcCCCCch-hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1113 ESKAFEQQEAARNGTRKPDA-SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1113 ~qka~e~AeAl~~~~~~~~~-~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
..+..+..++.......... ...+.-.+....+..+|+.-+.+.++|++|..|..+++..
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 55544443332211000000 0111112235566778999999999999999988777654
No 44
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.09 E-value=1.2e-08 Score=131.38 Aligned_cols=254 Identities=14% Similarity=0.085 Sum_probs=182.4
Q ss_pred cccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000187 887 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966 (1888)
Q Consensus 887 ~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E 966 (1888)
...+..+..+|.+|+.|..+|+|++|..||.+++... .++ ..-.+..||.+|.+.|+++.|...|++.+...
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~- 372 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL- 372 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhC-
Confidence 3445568889999999999999999999999998762 222 34578899999999999999999999998863
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000187 967 RELGLDHPDTMKSYGDLAVFYYRLQ----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 967 r~lG~Dhp~ta~ay~nLA~ly~~lG----dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
|+...+..-||.+|...+ ..++|..++.+++.. .|....+|..+|.+|....-+. ++.+|
T Consensus 373 -------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~~~-sL~~~ 436 (1018)
T KOG2002|consen 373 -------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDPWA-SLDAY 436 (1018)
T ss_pred -------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcChHH-HHHHH
Confidence 445556666777777765 456677777777654 2566789999999987655554 59999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCH-HH-HHHHHHHHHHHHHH--HH
Q 000187 1043 HKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL-RT-QDAAAWLEYFESKA--FE 1118 (1888)
Q Consensus 1043 ekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~-~t-l~a~~~La~L~qka--~e 1118 (1888)
..|+.++....+. .-...++++|..++.+|++.+|..++.+|+..+......+.. .+ +....+|+.+.... .+
T Consensus 437 ~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 437 GNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 9999998776443 345678999999999999999999999999886654443331 11 11233344333222 22
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1119 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1119 ~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+..++.. -..-|+...+.|..+|.....+++..+|..+++.++.+..+
T Consensus 514 ~A~e~Yk~--------Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 514 VAEEMYKS--------ILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred HHHHHHHH--------HHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 23322221 12235567777888887777888888888888888876544
No 45
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.07 E-value=1.4e-08 Score=116.78 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=137.2
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
....+..++.+|..++..|++++|+..+++++... ++++....+++.+|.+|..+|++++|+..|++++..
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~---- 99 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL---- 99 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----
Confidence 34567899999999999999999999999998763 456666788999999999999999999999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--------------HHHH
Q 000187 1011 CGPSHPNTAATYINVAMMEEGL--------GNVHVALRYLHKALKCNQRLLGPDHIQTAASY--------------HAIA 1068 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~l--------G~yeeAle~LekALei~ek~~G~d~~~tA~al--------------~nLA 1068 (1888)
.++++....+++.+|.++... |++++|+..|+++++.. +++.....++ ..+|
T Consensus 100 -~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 100 -HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred -CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777889999999876 78999999999998764 3333332222 2445
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHH
Q 000187 1069 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDY 1148 (1888)
Q Consensus 1069 ~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~ 1148 (1888)
.+|..+|++.+|+..++++++.+ ++.+...+++..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~---------------------------------------------p~~~~~~~a~~~ 208 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENY---------------------------------------------PDTPATEEALAR 208 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHC---------------------------------------------CCCcchHHHHHH
Confidence 55555555555555555444321 112244567889
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 000187 1149 INPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1149 Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
+|.+|...|++++|..+++....
T Consensus 209 l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 209 LVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998876544
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=3.2e-09 Score=122.74 Aligned_cols=235 Identities=17% Similarity=0.127 Sum_probs=185.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
.++|+.|+..|-+.+|...++.+|... .|+ ..+..|+.+|.+..+...|+..+.+.++. -|..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~------~~~---dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF------PHP---DTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC------Cch---hHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCch
Confidence 356899999999999999999999863 344 47888999999999999999999888875 3666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
...+..+|.++..++++++|+++|+.++++ ||....+...+|.-|.--++.+-|+.||++.|.+ |..
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~ 356 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQ 356 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCC
Confidence 777889999999999999999999999875 5666666777888899999999999999999987 444
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCchhh
Q 000187 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF--ESKAFEQQEAARNGTRKPDASI 1134 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L--~qka~e~AeAl~~~~~~~~~~~ 1134 (1888)
+ ...+.|+|.++...++++-++..+++|+.... +.....+.+.+|.+. ..+....+.......+.
T Consensus 357 s---peLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~----- 423 (478)
T KOG1129|consen 357 S---PELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT----- 423 (478)
T ss_pred C---hHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc-----
Confidence 4 45688999999999999999999999997653 233344555555543 23334444333222221
Q ss_pred hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1135 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1135 as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+...-.+.|++||.+..+.|+.++|..+|..|..+..-++
T Consensus 424 ---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 424 ---SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred ---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 2234567899999999999999999999999998887776
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.04 E-value=4.8e-08 Score=131.29 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=118.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000187 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
...++...|++++|+..+.+++.. .+..+.++..+|.++..+|++++|+.++++++.+ .|....
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~ 84 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDD 84 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 346677889999999888877653 3455667888999999999999999999998876 344456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000187 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
++..+|.++...|++++|+.++++++.. +|.... +..+|.+|...|++++|+..|++++++. ++
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-----P~-- 148 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-----PQ-- 148 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC--
Confidence 6778899999999999999999988875 344445 7778999999999999999999998874 33
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
...++..+|.++...|..++|+..++
T Consensus 149 -~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 149 -TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred -CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 34445566878877788777776555
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.03 E-value=4.3e-08 Score=131.77 Aligned_cols=247 Identities=15% Similarity=0.023 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+..+|..+...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-------- 112 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-------- 112 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 455777789999999999999999999987 3444567889999999999999999999999886
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH--------
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK-------- 1044 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Lek-------- 1044 (1888)
+|.... +..+|.++...|++++|+..|++++.+ +|....++..+|.++...+..++|+..+++
T Consensus 113 ~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~ 183 (765)
T PRK10049 113 APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEK 183 (765)
T ss_pred CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHH
Confidence 345555 889999999999999999999999986 344455666788888888888877766652
Q ss_pred -------------------------------HHHHHHHhcC--CC----cHHHHHHHHH-HHHHHHHcCChHHHHHHHHH
Q 000187 1045 -------------------------------ALKCNQRLLG--PD----HIQTAASYHA-IAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1045 -------------------------------ALei~ek~~G--~d----~~~tA~al~n-LA~ay~~lGdydeAle~lqk 1086 (1888)
|++.++.... +. .+....++.. ++ ++...|++++|+..|++
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Confidence 2222222211 01 1122222222 33 34567899999999887
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHH
Q 000187 1087 TLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 1166 (1888)
Q Consensus 1087 ALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyy 1166 (1888)
+++. ++..+..........++..+..+.+............. ........+..++.++..+|++++|+.++
T Consensus 263 ll~~-----~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~----~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 263 LKAE-----GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPET----IADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred hhcc-----CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC----CCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 6643 22223222222233466666677666554432211100 00011234566677788999999999999
Q ss_pred HHHHHHhc
Q 000187 1167 TYVAKVKG 1174 (1888)
Q Consensus 1167 eKALeL~d 1174 (1888)
+++.....
T Consensus 334 ~~~~~~~P 341 (765)
T PRK10049 334 AHTINNSP 341 (765)
T ss_pred HHHhhcCC
Confidence 98887643
No 49
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.02 E-value=9.7e-09 Score=122.24 Aligned_cols=247 Identities=15% Similarity=0.088 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHh------cCC---CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 000187 911 DAVTYGTKALAKLVAV------CGP---YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 981 (1888)
Q Consensus 911 EAie~~eeAL~l~eqi------~G~---dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~ 981 (1888)
+|.+++.+|-..+... +|. +....+..|...|.+|...+++++|...|.+|..+.++ ..+....+.+|.
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~--~~~~~~Aa~~~~ 79 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK--LGDKFEAAKAYE 79 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH--cCCHHHHHHHHH
Confidence 3455555555544421 222 23345677888899999999999999999999999888 234456778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000187 982 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l-G~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
+.|.+|... ++++|+.+|++|+.++... ......+.++.++|.+|... |++++|+++|++|+++++.. ......
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a 154 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSA 154 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHH
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhH
Confidence 988888777 9999999999999998763 23455688999999999999 99999999999999999775 244566
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcC
Q 000187 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD--AAAWLEYFESKAFEQQEAARNGTRKPDASIASKG 1138 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~--a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~ 1138 (1888)
..++..+|.++..+|+|++|+..|++....+...-. ....+.. ....|.+|..+....+...........+. -.
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l-~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~---F~ 230 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNL-LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS---FA 230 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCT-TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT---ST
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc-cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CC
Confidence 788899999999999999999999987754321111 1112222 23345566654444444333221111111 11
Q ss_pred CccHHHHHHHHHHHHH--HcCChHHHHHHHHH
Q 000187 1139 HLSVSDLLDYINPSHD--TKGRNVSTLKRKTY 1168 (1888)
Q Consensus 1139 ~~svaelL~~Lg~~y~--~qGdyeEAleyyeK 1168 (1888)
...-..++..|-.++. ....+.+|+.-|.+
T Consensus 231 ~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 231 SSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp TSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 1223344555555553 34556666666644
No 50
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.99 E-value=2.5e-08 Score=118.80 Aligned_cols=189 Identities=17% Similarity=0.082 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+...|..|...|++++|...|.+|...+.+. .+....+.+|...+.+|... ++++|+.+|++|+.++... .+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--Cc
Confidence 4455566788888999999999999999998773 34456678888888888776 9999999999999999763 34
Q ss_pred ChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~l-GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
....+.++.++|.+|... |++++|+++|++|+++++.. + .......++.++|.++..+|+|++|+..|++....+..
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e-~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE-G-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-C-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 455678999999999999 99999999999999999873 2 33445778899999999999999999999998775422
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
.- ......-..+...+.++...||+..|...+++...
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred cc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 21 11223445566778899999999988887776553
No 51
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=9.6e-09 Score=126.89 Aligned_cols=209 Identities=13% Similarity=0.101 Sum_probs=146.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
|..|..++..|++.+|.-+|+.|+.. +|..+.+|..||.+....++-..|+..+++|+++ +|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 56688889999999999999999865 7888999999999999999999999999999987 6788
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----Hh------cCC----CCh--------------------hHHHH
Q 000187 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLH-----LT------CGP----SHP--------------------NTAAT 1021 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~-----ki------~G~----dhP--------------------~~a~a 1021 (1888)
..++..||..|...|.-.+|+.++.+-+..-- .. .+. .+. .-..+
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 89999999999999999999999888765320 00 000 000 01123
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000187 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1022 ~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~ 1101 (1888)
+..||.+|...|+|+.|+++|+.||.. .|....+++.||-.+..-.+..+|+..|++|+++.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---------- 494 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ---------- 494 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC----------
Confidence 344444444445555555555544433 13334444444544444444455555444444321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1102 TQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1102 tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+......++||..|..+|.|++|.+||-.||.|.....
T Consensus 495 --------------------------------------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 495 --------------------------------------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred --------------------------------------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 12334568899999999999999999999999998865
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.99 E-value=5.5e-08 Score=113.94 Aligned_cols=273 Identities=14% Similarity=0.051 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dh-pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
...++++++.+....++.+++.|..-.+.+- |... ..-......||.++.-++.+++++++|++|+.++..+ .
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~ 156 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--D 156 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--C
Confidence 4556666777766677888888877776652 1111 1123456678999999999999999999999997653 3
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC-GPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~-G~dh-P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|...-.+.|..||.+|..+.++++|+-|..+|+++..... +..| -....+++.++..|..+|+.-.|.++.++|.++.
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4444568899999999999999999999999999987643 2212 2245678889999999999999999999999997
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHH---HHHHH
Q 000187 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA--FEQ---QEAAR 1124 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka--~e~---AeAl~ 1124 (1888)
-.. .+....+.++.-+|.+|...|+.+.|...|++|+.+.... |..-. ..+++...+...... ... -+++.
T Consensus 237 l~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~-gdrmg-qv~al~g~Akc~~~~r~~~k~~~Crale 312 (518)
T KOG1941|consen 237 LQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL-GDRMG-QVEALDGAAKCLETLRLQNKICNCRALE 312 (518)
T ss_pred HHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh-hhhHH-HHHHHHHHHHHHHHHHHhhcccccchhH
Confidence 665 4566788899999999999999999999999999887653 22111 112221111110000 000 00111
Q ss_pred hcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1125 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1125 ~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
......+.+........+..+...++.+|+.+|.-++=...+.++-+....
T Consensus 313 ~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~~e 363 (518)
T KOG1941|consen 313 FNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECVEE 363 (518)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 111111111112223356778899999999999988877777776665444
No 53
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.99 E-value=5.2e-08 Score=125.58 Aligned_cols=251 Identities=16% Similarity=0.088 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+..+|..++..|+|..+..+..-|+... ...+..+..++++|++|+.+|+|++|..||.+|+... .+
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d-- 339 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND-- 339 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC--
Confidence 34456788889999999999999988763 2245678899999999999999999999999998752 22
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHH
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG----~yeeAle~LekALei~e 1050 (1888)
.....+..||.+|...|+++.|..+|++.+.. .|+...++.-||.+|...+ ..+.|..++.++++..
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--------~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--------LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHh--------CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 25678899999999999999999999999875 2555566677899998876 4566777777766553
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
+....+|..||++|....-+ .++.+|..|+.++......--+..+.....+ ++..+.++.+......+...
T Consensus 411 -------~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl-hf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 411 -------PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASL-HFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred -------cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH-HHHhcChHHHHHHHHHHhhh
Confidence 45667888999998775554 4599999999999887777554444444433 44444444443322211111
Q ss_pred chhhhhcC--CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1131 DASIASKG--HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1131 ~~~~as~~--~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.......+ ......+.+++|.++...++++.|-+.|+..++....
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 00000010 0122456899999999999999999999998876554
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.95 E-value=2.1e-08 Score=117.40 Aligned_cols=267 Identities=14% Similarity=0.128 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
....+.|..++...++++|+..+.+.|..+.... .....|..+..+...+|.|++++.+.--.+..+... .|+
T Consensus 7 k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~-----~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds 79 (518)
T KOG1941|consen 7 KKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLM-----GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDS 79 (518)
T ss_pred HHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHH-----HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3445667777889999999999999998766543 234678888999999999999998877777666553 345
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh-P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.....+|.||+..+....++.+++.|.+..+.+- |... ..-......+|..+..++.+++++++|+.|+++....
T Consensus 80 ~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 80 DFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN 155 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 5677899999999999999999999887776642 2211 1123455568999999999999999999999998655
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---HHHH---HHHHHHHHHHHhc
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL---EYFE---SKAFEQQEAARNG 1126 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L---a~L~---qka~e~AeAl~~~ 1126 (1888)
.+...-..++..||.+|..+.|+++|+-+..+|+++.... +-++...+.-...| +-.. ...++..+...+.
T Consensus 156 --~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~-~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea 232 (518)
T KOG1941|consen 156 --DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY-GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEA 232 (518)
T ss_pred --CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc-CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3333455778889999999999999999999999998764 43333333222222 1111 1112222222111
Q ss_pred CCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1127 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1127 ~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
........+....+..+.-+|++|+.+|+.+.|...|++|+.+..+++
T Consensus 233 ---~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g 280 (518)
T KOG1941|consen 233 ---MKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG 280 (518)
T ss_pred ---HHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence 112334455556777889999999999999999999999999998887
No 55
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.95 E-value=3.6e-08 Score=119.74 Aligned_cols=169 Identities=18% Similarity=0.134 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
..+..|..++..|++++|+.++++++.. +|....++.. +..+..+|++..+...+.+++.. ....++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~ 111 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENP 111 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCC
Confidence 3445678888999999999999999876 2333344444 66666777666666666665543 345677
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
.....+..+|.++..+|++++|+..+++++.+. |.....+..+|.+|...|++++|+.++++++.....
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--- 180 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--- 180 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---
Confidence 777888888999999999999999999988852 333566778899999999999999999888876522
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
........+..+|.+|...|++++|+..+++++
T Consensus 181 -~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 181 -SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred -CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 112234456678888999999999998888874
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.5e-08 Score=122.74 Aligned_cols=246 Identities=13% Similarity=0.124 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
+.+.+...+..++..++|.+-.+.....+.. .+-|+... -..|| +++.+|+..+ +|.-+..+.+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-----dpfh~~~~--~~~ia-~l~el~~~n~---Lf~lsh~LV~----- 306 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-----DPFHLPCL--PLHIA-CLYELGKSNK---LFLLSHKLVD----- 306 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-----CCCCcchH--HHHHH-HHHHhcccch---HHHHHHHHHH-----
Confidence 3566777888999999999988888888776 23444422 23455 7777777654 4444444433
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
++|..+..++.+|.+|...|++.+|.+||.+|..+ ++..+.+|...|..|...|+.++|+.+|..|-++...
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 37888889999999999999999999999999876 3556677888999999999999999999999887632
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
. | .-...+|.=|.++++++.|..+|.+|+.|+ |.++-...-...+++-. +.+..|....+.+....
T Consensus 379 ~----h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-----P~Dplv~~Elgvvay~~-~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 379 C----H----LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-----PSDPLVLHELGVVAYTY-EEYPEALKYFQKALEVI 444 (611)
T ss_pred C----c----chHHHHHHHHHHhccHHHHHHHHHHHHhcC-----CCcchhhhhhhheeehH-hhhHHHHHHHHHHHHHh
Confidence 2 2 123447888999999999999999999885 77776655555444322 22333332222221111
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000187 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
... ......+.-++.+||.+|+++++|++|+.+|++++.+.++.
T Consensus 445 k~~-~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 445 KSV-LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred hhc-cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 111 11112466689999999999999999999999999988763
No 57
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.94 E-value=3.4e-09 Score=101.34 Aligned_cols=78 Identities=37% Similarity=0.533 Sum_probs=72.0
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
||.++.+|.+||.+|..+|+|++|+.+|++|+.+ ...+|.+|+.++.++.++|.+|..+|++++|+.++++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6889999999999999999999999999999999 66678899999999999999999999999999999999999753
No 58
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.94 E-value=4.1e-09 Score=100.75 Aligned_cols=78 Identities=32% Similarity=0.454 Sum_probs=72.5
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
||+++.++.++|.+|..+|+|++|+.+|++|+++ .+.+|.+++.++.+++++|.+|..+|++++|++++++|++|+++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7999999999999999999999999999999999 67778888899999999999999999999999999999999864
No 59
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.9e-07 Score=127.67 Aligned_cols=192 Identities=14% Similarity=-0.019 Sum_probs=149.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dh-pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
...+..++..|++++|..++.++.......-...+ ...+.+...+|.++...|++++|..++++++..... .+...
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~ 489 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYS 489 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHH
Confidence 34566677889999999999998776433210112 223556677899999999999999999999875211 12222
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
...++..+|.++...|++++|+.++.+++.+.... |..+ ....++.++|.++...|++++|..++++++.+.....+.
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVYH-YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cchH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45677889999999999999999999999987753 4333 345678899999999999999999999999998776544
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
..+..+.++..+|.++...|++++|..++++++.+...
T Consensus 568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 44445566778899999999999999999999988763
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.93 E-value=1.7e-09 Score=127.87 Aligned_cols=233 Identities=21% Similarity=0.246 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
+.+|..++..|++++|++.+.+++... ..+.....|..+|.+...+++++.|+..|++.+..- +..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccc--------ccc
Confidence 355888999999999999997765442 123344678889999999999999999999998752 224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
...+.+|+.+ ...+++++|+.+++++.+-. .++. .+..+..++...++++++...++++... ..
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~~---~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~ 141 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDPR---YLLSALQLYYRLGDYDEAEELLEKLEEL------PA 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-------T-
T ss_pred cccccccccc-cccccccccccccccccccc------cccc---hhhHHHHHHHHHhHHHHHHHHHHHHHhc------cC
Confidence 4556677777 68999999999988876531 1232 2344667788999999999999987742 12
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCchhhh
Q 000187 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR-NGTRKPDASIA 1135 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~-~~~~~~~~~~a 1135 (1888)
.......+..+|.++...|+.++|+..+++|++. .|++......+.|+. +..+..+.+..+. .... .
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~l-i~~~~~~~~~~~l~~~~~------~ 209 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWLL-IDMGDYDEAREALKRLLK------A 209 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHHH-CTTCHHHHHHHHHHHHHH------H
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHH-HHCCChHHHHHHHHHHHH------H
Confidence 2345667888999999999999999999999965 588888777766653 2233333222221 1100 0
Q ss_pred hcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1136 SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1136 s~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
....+ .++..+|.+|...|++++|+.+|+++++...
T Consensus 210 ~~~~~---~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 210 APDDP---DLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp -HTSC---CHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred CcCHH---HHHHHHHHHhccccccccccccccccccccc
Confidence 01111 2567889999999999999999999988654
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=4.9e-09 Score=121.18 Aligned_cols=171 Identities=18% Similarity=0.223 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
.+...+...|+++-..+++++|.++|+.++++ |+....+...+|.-|+.-++.+-|+.||++.|.+ |
T Consensus 288 ~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G 354 (478)
T KOG1129|consen 288 FDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----G 354 (478)
T ss_pred chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----c
Confidence 34566778889999999999999999999887 5555567777899999999999999999999998 6
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
..+| ..++|+|+|++..++++-++..|++|+.... +....+.+|+|||.+....|++..|.++|+-||..
T Consensus 355 ~~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-- 424 (478)
T KOG1129|consen 355 AQSP---ELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-- 424 (478)
T ss_pred CCCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--
Confidence 5555 4689999999999999999999999998753 23456889999999999999999999999988743
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+.+.+.++.|||.+-.+.|+..+|..++..|-..
T Consensus 425 ------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 425 ------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred ------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4567889999999999999999999998877654
No 62
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=3.1e-07 Score=107.26 Aligned_cols=250 Identities=19% Similarity=0.095 Sum_probs=153.7
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000187 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
...++...+++|..++..|++.+|+..|..|++. +|....+++..|.+|..+|+-..|+.-+.+.|.+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel---- 101 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL---- 101 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc----
Confidence 4455666777777777778888888777777754 3444444555555555555555555554444443
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHH-------------------------------------------------HH
Q 000187 969 LGLDHPDTMKSYGDLAVFYYRLQHTELAL-------------------------------------------------KY 999 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeAL-------------------------------------------------ey 999 (1888)
.|+...+...-|.++..+|++++|. ++
T Consensus 102 ----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 102 ----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred ----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 2344444444445555555555544 44
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 000187 1000 VKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 1079 (1888)
Q Consensus 1000 ~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyde 1079 (1888)
..+.|++ .|..+..+...|.+|...|+...|+.-++.+-++. . .....++.++.+++..|+.+.
T Consensus 178 i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-----~---DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 178 ITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-----Q---DNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-----c---cchHHHHHHHHHHHhhhhHHH
Confidence 4444443 24445566667778888888888887777766653 1 234567888999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HhcCCC--Cc---------------
Q 000187 1080 SVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAA-----------RNGTRK--PD--------------- 1131 (1888)
Q Consensus 1080 Ale~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl-----------~~~~~~--~~--------------- 1131 (1888)
++.-.++++ .+.++|....-.+..|..+........++. .+.... +.
T Consensus 242 sL~~iRECL-----KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 242 SLKEIRECL-----KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHH-----ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 999999988 457888776666655543332211111110 000000 00
Q ss_pred -------------hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1132 -------------ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1132 -------------~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
........++-.++|..-+.+|.....|+.|+.-|++|+++..+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 00112233455678899999999999999999999999987655
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=3.1e-07 Score=107.18 Aligned_cols=240 Identities=13% Similarity=0.063 Sum_probs=178.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000187 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
.|..++-..+.++|+.+|.+.+.. ++.+..+...||.+|...|+.+.|+...+-.+.-- +.....-..
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHHH
Confidence 456666778899999999988874 67778899999999999999999999887554410 111223457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000187 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
++..||.-|+..|-++.|+..|....+.- ...-.++-.|-.+|+...+|++|++..++..++-.+ ....
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~--------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~ 177 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEG--------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRV 177 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcch--------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchh
Confidence 88899999999999999999998876531 112356777899999999999999988877766432 3456
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcC
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKG 1138 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~ 1138 (1888)
..|..|..||+.+....+++.|...+++|++. ++....+...++.+....++.+.+.... ..+...+
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~-----e~v~eQn 244 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEAL-----ERVLEQN 244 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHH-----HHHHHhC
Confidence 78999999999999999999999999999964 2333334444444444444443333211 1122344
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1139 HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1139 ~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
+..+.+++..|..+|..+|+.++.+.++.++.+...
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 557788999999999999999999999999887553
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.2e-07 Score=113.29 Aligned_cols=170 Identities=19% Similarity=0.185 Sum_probs=141.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
+-.+.++...|++++|+..--..+.+ ++..+.++..-|.+++..++.+.|+.+|+++|.+ +++|...
T Consensus 173 ~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~~s 239 (486)
T KOG0550|consen 173 LLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQKS 239 (486)
T ss_pred HhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----ChhhhhH
Confidence 33467888899999998776666655 4556778888999999999999999999999987 6666655
Q ss_pred HHHH---------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000187 977 MKSY---------GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-NTAATYINVAMMEEGLGNVHVALRYLHKAL 1046 (1888)
Q Consensus 977 a~ay---------~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP-~~a~a~~NLA~iy~~lG~yeeAle~LekAL 1046 (1888)
-.++ -.-|.-.+..|+|.+|.++|..||.+- ++|. ..+..|.|.|.++.++|+..+|+.-++.|+
T Consensus 240 k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-----P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 240 KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-----PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-----ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 4444 345778899999999999999999863 3332 357889999999999999999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000187 1047 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1047 ei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
.+- ..+..+|+..|++|..+++|++|++.|++|++.-.
T Consensus 315 ~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 315 KID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 884 45678899999999999999999999999997643
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=4.4e-07 Score=110.39 Aligned_cols=209 Identities=17% Similarity=0.078 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+...|+.++|...+.++...... +..........|.+++..|++++|+.++++++..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-------- 72 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD-------- 72 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 445667788888899999998888887766432 2233456677899999999999999999999875
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|....++.. +..+...|++..+...+.+++.. ..+.+|.....+..+|.++..+|++++|+..+++++++.
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--- 144 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--- 144 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3433444444 66677777776666666666553 346788888888899999999999999999999999874
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
++ ...+++.+|.+|...|++++|+.++++++..... ++.
T Consensus 145 --p~---~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-----~~~------------------------------- 183 (355)
T cd05804 145 --PD---DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-----SSM------------------------------- 183 (355)
T ss_pred --CC---CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-----Ccc-------------------------------
Confidence 22 2566788999999999999999999888754311 000
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1133 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1133 ~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
.....+..++.++..+|++++|+.+|++++.
T Consensus 184 --------~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 184 --------LRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred --------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1112355667777778888888888877743
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=6.6e-08 Score=104.07 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Q 000187 913 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 992 (1888)
Q Consensus 913 ie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd 992 (1888)
..+|++++++ +|.. +..+|.++..+|++++|+.+|++++.+ .|....++.++|.++..+|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4567888776 3442 557899999999999999999999876 56778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 993 yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+++|+.+|.+|+.+ .|....+++++|.+|..+|++++|+..|++|+++.
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999985 35566789999999999999999999999999875
No 67
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=1.6e-07 Score=123.53 Aligned_cols=170 Identities=15% Similarity=0.044 Sum_probs=141.1
Q ss_pred HHHHHHHHH-HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 893 GRQLLESSK-TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~-~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
++.++.+++ +.-..|....+.+.+-+++.+... .+..+.++.+||.+...+|.+++|+.+++.++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------- 115 (694)
T PRK15179 48 GRELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR------- 115 (694)
T ss_pred HHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-------
Confidence 344444442 333446666666666666666544 3555789999999999999999999999999997
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.|+...+..++|.++.+++++++|+..+++++.. .|+.+..++.+|.++..+|+|++|+.+|+++++.
T Consensus 116 -~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--- 183 (694)
T PRK15179 116 -FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--- 183 (694)
T ss_pred -CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc---
Confidence 4778899999999999999999999999999975 4677888999999999999999999999999872
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++....++..+|.++..+|+.++|...|++|++.+
T Consensus 184 -----~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 184 -----HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34556788889999999999999999999999765
No 68
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.77 E-value=6.1e-08 Score=106.39 Aligned_cols=131 Identities=15% Similarity=0.061 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+.+++++|.++..+|++++|+.+|++|+.+. +++...+.++.++|.+|...|++++|+.+|++|+.+.... +
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~ 106 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-P 106 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-H
Confidence 456788999999999999999999999999863 3455667799999999999999999999999999874322 2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000187 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
..+...+.++.++|..+..+|+++.|+.++++|+.++++.++.++..+.....|+..
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~ 163 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKI 163 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 223445566666666666999999999999999999999999998777777766654
No 69
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.1e-07 Score=117.81 Aligned_cols=182 Identities=17% Similarity=0.128 Sum_probs=152.3
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Q 000187 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE-- 966 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E-- 966 (1888)
....++....+|.+....++-..|+..+++|+++ +|....++..||..|...|.-.+|+.++.+=|...-
T Consensus 315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y 386 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKY 386 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccc
Confidence 4455777888899999999999999999999987 677778999999999999999999988877544320
Q ss_pred ---H------hcC----CC------------------Ch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 967 ---R------ELG----LD------------------HP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 967 ---r------~lG----~D------------------hp--~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
+ ..+ .. ++ .-...+..||.+|+..|+|++|+.+|+.||..
T Consensus 387 ~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------- 459 (579)
T KOG1125|consen 387 VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------- 459 (579)
T ss_pred hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-------
Confidence 0 000 00 11 22356788999999999999999999999974
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.|....+++.||..+..-.+.++|+..|++||++. |.+..+.+|||..|..+|.|++|+.||-.|+.+.++
T Consensus 460 -~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 460 -KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred -CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 57778899999999999999999999999999984 667889999999999999999999999999999876
Q ss_pred h
Q 000187 1094 K 1094 (1888)
Q Consensus 1094 ~ 1094 (1888)
.
T Consensus 531 s 531 (579)
T KOG1125|consen 531 S 531 (579)
T ss_pred c
Confidence 3
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.74 E-value=1.8e-06 Score=108.20 Aligned_cols=251 Identities=12% Similarity=-0.001 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++-.|+.+..+|+++.|..++.++.+.. +++. ..+...++.++...|++++|+..+++.+..
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-------- 182 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-------- 182 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 3445566889999999999999999987542 1211 123445699999999999999998888775
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHH-h--------------cCCCCh----hH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL---------------LHL-T--------------CGPSHP----NT 1018 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL---------------~~k-i--------------~G~dhP----~~ 1018 (1888)
+|....++..++.+|...|++++|++++.+.++. +.. . .....| ..
T Consensus 183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~ 262 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN 262 (409)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence 3445567888999999999999998887776632 000 0 001122 24
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000187 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 1098 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~d 1098 (1888)
...+..+|..+...|++++|+..++++++.. ++........ .....+...++...++..++++++. .++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~~-l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~ 331 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLPL-CLPIPRLKPEDNEKLEKLIEKQAKN-----VDD 331 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhHH-HHHhhhcCCCChHHHHHHHHHHHHh-----CCC
Confidence 5667778889999999999999999998864 3332211011 1122233357777787777777643 577
Q ss_pred CH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000187 1099 DL--RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1099 h~--~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
++ ....++.|+. +..+.++.++.+.+...... ..+.. +.+..+|.++..+|+.++|.++|++++...-.+
T Consensus 332 ~~~~~ll~sLg~l~-~~~~~~~~A~~~le~a~a~~------~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~ 403 (409)
T TIGR00540 332 KPKCCINRALGQLL-MKHGEFIEAADAFKNVAACK------EQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAI 403 (409)
T ss_pred ChhHHHHHHHHHHH-HHcccHHHHHHHHHHhHHhh------cCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 77 7777888876 45555665555444211100 01122 235588999999999999999999999887776
Q ss_pred c
Q 000187 1177 Y 1177 (1888)
Q Consensus 1177 ~ 1177 (1888)
.
T Consensus 404 ~ 404 (409)
T TIGR00540 404 Q 404 (409)
T ss_pred c
Confidence 5
No 71
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.73 E-value=2.6e-06 Score=109.95 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.++.++..|..++..|++++|+..+.+++.+ .|....+|+.||.+|.++|+.++|+.....|-.+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------- 202 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------- 202 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence 3677888889999999999999999999987 5666789999999999999999999888777554
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.|.....+..+|.....+|++++|.-||.+|+.+ .|.....+...+.+|.++|++..|++.|.+++...-
T Consensus 203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p- 272 (895)
T KOG2076|consen 203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP- 272 (895)
T ss_pred -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-
Confidence 2333367788999999999999999999999985 345567778899999999999999999999988752
Q ss_pred hcCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000187 1052 LLGPDHI-QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1052 ~~G~d~~-~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
+.+. ..-......+..+...++-+.|++.+..++..-....+
T Consensus 273 ---~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~ 315 (895)
T KOG2076|consen 273 ---PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS 315 (895)
T ss_pred ---chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc
Confidence 1122 22333445577788888778888888888774333333
No 72
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.72 E-value=1.1e-06 Score=109.74 Aligned_cols=238 Identities=9% Similarity=-0.052 Sum_probs=160.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~-A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
++..+.....+|+++.|..++.++.+. .++. .......+.++...|++++|+..+++.++. .|
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~--------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P 184 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL--------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------AP 184 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 445567779999999999999999765 2221 122234489999999999999999998775 35
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------HHh---------------cCCCChhHHH
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLL-------------------HLT---------------CGPSHPNTAA 1020 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~-------------------~ki---------------~G~dhP~~a~ 1020 (1888)
....++..++.+|...|++++|++.+.+..... ... .....+....
T Consensus 185 ~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~ 264 (398)
T PRK10747 185 RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA 264 (398)
T ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH
Confidence 556778888999999999999997766655310 000 0011233344
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCH
Q 000187 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 1100 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~ 1100 (1888)
+...+|..+...|+.++|...++++++. +.++..+..+ +. ...++++++++.+++.++. .++++
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~---~~--l~~~~~~~al~~~e~~lk~-----~P~~~ 328 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLI---PR--LKTNNPEQLEKVLRQQIKQ-----HGDTP 328 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHH---hh--ccCCChHHHHHHHHHHHhh-----CCCCH
Confidence 5667788889999999999999888863 2333332222 22 2348888888887766632 46777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1101 RTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1101 ~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
....+...+. +..+.+..++...+...... ++ ...+..++.++..+|+.++|..+|++++.+...
T Consensus 329 ~l~l~lgrl~-~~~~~~~~A~~~le~al~~~--------P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 329 LLWSTLGQLL-MKHGEWQEASLAFRAALKQR--------PD-AYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 6655555553 34444555554443322111 12 234668999999999999999999999987643
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=2.5e-07 Score=121.72 Aligned_cols=134 Identities=10% Similarity=0.022 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
++..++.+|.+....|.+++|+.+++.++++ .|+...++.++|.++.+++++++|+..+++++..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------- 149 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG------- 149 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-------
Confidence 4677888899999999999999999999988 5777889999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|+.+.+++.+|.++..+|+|++|+.+|++++. .||+...++.++|.++..+|+.++|...|++|++..
T Consensus 150 -~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 150 -GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 577888999999999999999999999999986 257777889999999999999999999999999875
No 74
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.72 E-value=2.2e-06 Score=107.45 Aligned_cols=245 Identities=13% Similarity=-0.002 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+...+..|...+..|+++.|.+.+.++.+. .+.-...+...|.++..+|+++.|..++.++.+..
T Consensus 82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~----- 148 (409)
T TIGR00540 82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA----- 148 (409)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 34677788899999999999999999887664 23334566778999999999999999999987542
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC-- 1048 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei-- 1048 (1888)
+++. .......+.++...|++++|+..+++.++. .++|+ .++..++.+|...|+|++|++.+.+.++.
T Consensus 149 p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 149 GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHK---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 1111 123344589999999999999999988874 35555 55677899999999999999888777642
Q ss_pred -----H--------HHhc---------------CCCcH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000187 1049 -----N--------QRLL---------------GPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1049 -----~--------ek~~---------------G~d~~----~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
. ...+ -...+ .....+..+|..+...|++++|+..++++++..
T Consensus 219 ~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----- 293 (409)
T TIGR00540 219 FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----- 293 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----
Confidence 0 0000 00011 234667778899999999999999999998642
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHH--HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1097 PDDLRTQ-DAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVS--DLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1097 ~dh~~tl-~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~sva--elL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
+++.... .....+..+..+....+....+.. ...++.-. .++..+|.++...|++++|.+||+++..
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~--------lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ--------AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHH--------HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 3333211 111111122212222222111111 11122223 6788999999999999999999995443
No 75
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.71 E-value=2.2e-07 Score=101.97 Aligned_cols=122 Identities=14% Similarity=0.059 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+.++..+|.++..+|++++|+.++++|+.+. .++.....++.+||.+|...|++++|+.+|++|+.+... .+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~ 106 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LP 106 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cH
Confidence 357789999999999999999999999999873 345556779999999999999999999999999986221 11
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000187 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
..+..++.++.++|..+..+|++++|+.++++|+..+++.++.++..+
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 112233344444444444999999999999999999999888776544
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.68 E-value=1.3e-07 Score=112.09 Aligned_cols=166 Identities=27% Similarity=0.275 Sum_probs=98.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+......+...|+++++..++.++... ...+.....+..+|.++...|++++|+..+++|+.. .|+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~P~ 178 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--------DPD 178 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------TT
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCC
Confidence 334456677888888888888886642 122344667888899999999999999999999887 344
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
...+...|+.++...|+++++.+.+....... +.+|. .+..+|.+|..+|++++|+.+|+++++.. +
T Consensus 179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~~-----p 245 (280)
T PF13429_consen 179 DPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPD---LWDALAAAYLQLGRYEEALEYLEKALKLN-----P 245 (280)
T ss_dssp -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHHS-----T
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHH---HHHHHHHHhcccccccccccccccccccc-----c
Confidence 45566778888888888888777666655542 22333 34567888889999999999999888753 3
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+ ....+..+|.++...|++++|..++++++...
T Consensus 246 ~---d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 246 D---DPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp T----HHHHHHHHHHHT-------------------
T ss_pred c---cccccccccccccccccccccccccccccccc
Confidence 3 34456677889999999999988888887543
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.67 E-value=2.4e-06 Score=106.84 Aligned_cols=244 Identities=16% Similarity=0.050 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+...+..|...+..|++++|++...++-.. .++|. ..+...+.+...+|+++.|..++++|....
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~--l~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPV--VNYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 34677788899999999999999776664332 12232 224444666699999999999999997642
Q ss_pred CCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 971 LDHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 971 ~Dhp~t-a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
++. .......+.++...|++++|+.+++++++. .++|+ .++..++.+|...|+|++|+..+.+..+..
T Consensus 149 ---~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~P~~~---~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 ---DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-----APRHP---EVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred ---CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 222 222334589999999999999999998874 35555 556668999999999999997776655310
Q ss_pred -------------------HHh---------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000187 1050 -------------------QRL---------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1050 -------------------ek~---------------~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
... .....+....+...+|..+...|+.++|...++++++.
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----- 292 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----- 292 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 000 00011223345667799999999999999999888751
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1096 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
+.|+.....+.. +..+..+.+....+. ..+.++.-.+++..+|.++...|++.+|..+|++++++..+
T Consensus 293 -~~~~~l~~l~~~---l~~~~~~~al~~~e~--------~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 293 -QYDERLVLLIPR---LKTNNPEQLEKVLRQ--------QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred -CCCHHHHHHHhh---ccCCChHHHHHHHHH--------HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 334433332222 222232322222111 11223344567899999999999999999999999987544
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=7.2e-07 Score=101.18 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=104.0
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000187 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 985 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ 985 (1888)
.++.++++..+++++.. +|.....|..||.+|..+|++++|+..|++|+.+ .|+....+.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 46678888888888876 5677789999999999999999999999999997 4566788899999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 986 FY-YRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 986 ly-~~lGd--yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
++ ...|+ +++|...+++++.+ +|....+++++|.++..+|+|++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 67787 59999999999985 45556788999999999999999999999999875
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.63 E-value=4.7e-06 Score=97.63 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++++|+-|+..|-++.|+..|....+. ....-.++..|..+|....++++|++..++.+.+-.+ ..
T Consensus 107 ~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~ 175 (389)
T COG2956 107 LLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TY 175 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cc
Confidence 567889999999999999999999887653 1122368899999999999999999988887776322 12
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
....+..|+.||..+....+.+.|...+.+|+.. +|....+-..+|.++...|+|+.|++.++.+++-
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---- 243 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---- 243 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh----
Confidence 4567899999999999999999999999999985 4555666777999999999999999999988875
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++..+..++..|..+|..+|+.++.+.++.++.+.+
T Consensus 244 ---n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 244 ---NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred ---ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 344567788889999999999999999999988764
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.3e-06 Score=107.75 Aligned_cols=234 Identities=17% Similarity=0.117 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+...-++|...+...+|..|++.|..++.+. .....+.+.|.+|+.+|.+.+.+....+|++.-.... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 46667788899999999999999999999984 2345678899999999999999999999887643321 2
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+.-.++.++..+|..|..+++++.|+.+|++++.-.+. ..++..+...++++...+...-+
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----------------~~~ls~lk~~Ek~~k~~e~~a~~--- 353 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----------------PDLLSKLKEAEKALKEAERKAYI--- 353 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----------------HHHHHHHHHHHHHHHHHHHHHhh---
Confidence 23335677777899999999999999999998875322 12222222233333322221111
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
.+..+.-...-|..++..|+|..|+.+|.+|+.. .|++... .+...+.++.. +....++...
T Consensus 354 -----~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr-----~P~Da~l-YsNRAac~~kL--~~~~~aL~Da----- 415 (539)
T KOG0548|consen 354 -----NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR-----DPEDARL-YSNRAACYLKL--GEYPEALKDA----- 415 (539)
T ss_pred -----ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-----CCchhHH-HHHHHHHHHHH--hhHHHHHHHH-----
Confidence 1222333333455556666666666666655422 2333322 11112222222 2222222110
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000187 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
......++.....|..-|.++..+.+|++|++.|++++++.
T Consensus 416 -~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 416 -KKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred -HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00111133444556666666677777777777777777654
No 81
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=2.8e-07 Score=107.51 Aligned_cols=124 Identities=25% Similarity=0.313 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000187 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....|..|-..|..++..++|.+|+..|.+||.+ .|..+..|.+.|.+|.++|+|+.|++-++.||.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4567899999999999999999999999999987 6777889999999999999999999999999998
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000187 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
+|....+|..||.+|..+|++++|++.|++||++ .|+......+|.++-..+++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6888999999999999999999999999999986 3444455556666555554443
No 82
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.62 E-value=2.3e-07 Score=99.92 Aligned_cols=111 Identities=14% Similarity=0.017 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
++.+|..+...|++++|+.+|++++.+ .|....++..+|.++..+|++++|+..|++|+.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 556789999999999999999999876 5667789999999999999999999999999986 466
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~ 1030 (1888)
...+++++|.++..+|++++|+..|.+|+.+ . |+....+.++|.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~-----~---p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKM-----S---YADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---CCChHHHHHHHHHHH
Confidence 7889999999999999999999999999986 2 333444555665544
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.4e-07 Score=108.64 Aligned_cols=268 Identities=16% Similarity=0.075 Sum_probs=180.1
Q ss_pred hccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000187 879 LVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 958 (1888)
Q Consensus 879 l~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~ 958 (1888)
+.|..........++..+...|..++.+.+|.+|+..|..|+.+ .|..+..|.+-+.+|+..|+|++|+-.+
T Consensus 35 ~~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~da 106 (486)
T KOG0550|consen 35 TSPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDA 106 (486)
T ss_pred cCccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccch
Confidence 33444444555677889999999999999999999999999988 3445788999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHHHHHhcCC--CChhHHHHHHHHHHH
Q 000187 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA--------LYLLHLTCGP--SHPNTAATYINVAMM 1028 (1888)
Q Consensus 959 eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kA--------LeL~~ki~G~--dhP~~a~a~~NLA~i 1028 (1888)
++.+.+ .+.....+..++.++..+++..+|.++|+.. +.....+... ..|........-+.+
T Consensus 107 r~~~r~--------kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~c 178 (486)
T KOG0550|consen 107 RQSVRL--------KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAEC 178 (486)
T ss_pred hhheec--------CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhh
Confidence 998876 2334456677777887777777777666521 1111111111 124455555667889
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000187 1029 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108 (1888)
Q Consensus 1029 y~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~ 1108 (1888)
+..+|++++|+..--..+++. ...+.+++.-|.+++..++.+.|+.++++++ .++++|.....+...
T Consensus 179 l~~~~~~~~a~~ea~~ilkld--------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal-----~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD--------ATNAEALYVRGLCLYYNDNADKAINHFQQAL-----RLDPDHQKSKSASMM 245 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc--------cchhHHHHhcccccccccchHHHHHHHhhhh-----ccChhhhhHHhHhhh
Confidence 999999999988655555442 3455667777999999999999999999999 458888877766555
Q ss_pred HHHHHHH-----------HHHHHHHHHhcCCCCc------------------------------hhhhhcCCccHHHHHH
Q 000187 1109 LEYFESK-----------AFEQQEAARNGTRKPD------------------------------ASIASKGHLSVSDLLD 1147 (1888)
Q Consensus 1109 La~L~qk-----------a~e~AeAl~~~~~~~~------------------------------~~~as~~~~svaelL~ 1147 (1888)
...+... .+..+...+.....++ ...+..-..+....|.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 4443221 1111111111111110 1111222234455666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1148 YINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1148 ~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.-|.++...+++++|.++|++++++..+
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6677777777777777777777776655
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.58 E-value=9.9e-06 Score=103.36 Aligned_cols=251 Identities=18% Similarity=0.102 Sum_probs=176.1
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000187 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
...+-..+|+++..|..+++++.|..+.++++++- ..+.+.+|..||.++..++++.+|+.....|+.-....
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 33445678889999999999999999999999872 23446799999999999999999999999998765432
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------------------------------------
Q 000187 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT-------------------------------------- 1010 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki-------------------------------------- 1010 (1888)
++.. ..- ..+-...++.++|+..+.+.+.+|+..
T Consensus 547 ~~l~-----~~~---~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 547 HVLM-----DGK---IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhhc-----hhh---hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 2111 111 111222455555555555555555510
Q ss_pred ---------------------cCCCChhH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000187 1011 ---------------------CGPSHPNT--AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067 (1888)
Q Consensus 1011 ---------------------~G~dhP~~--a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nL 1067 (1888)
-|++|+.. ...+...|..+...++-++|.-++.+|-.++ +..+..|+..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~ 690 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLR 690 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHh
Confidence 01222221 2344566778888889999999999998775 4567888999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCchhhhhcCCccHHHH
Q 000187 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEA--ARNGTRKPDASIASKGHLSVSDL 1145 (1888)
Q Consensus 1068 A~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeA--l~~~~~~~~~~~as~~~~svael 1145 (1888)
|..+...|++.+|.+.|..|+. +.|+|...+.+..-+ ++..+....++. +...+ ..-.+..-++
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~-----ldP~hv~s~~Ala~~-lle~G~~~la~~~~~L~da--------lr~dp~n~ea 756 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALA-----LDPDHVPSMTALAEL-LLELGSPRLAEKRSLLSDA--------LRLDPLNHEA 756 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHh-----cCCCCcHHHHHHHHH-HHHhCCcchHHHHHHHHHH--------HhhCCCCHHH
Confidence 9999999999999999999984 479998877766544 233332222222 21111 1112244578
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000187 1146 LDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1146 L~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
++++|.++..+|+.++|.++|.-|+++-++.
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999998774
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.57 E-value=1.3e-06 Score=99.17 Aligned_cols=120 Identities=17% Similarity=0.180 Sum_probs=102.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000187 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 1027 (1888)
Q Consensus 948 lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~ 1027 (1888)
.++.++++..+++++.. +|+....+..||.+|..+|++++|+..|.+|+.+ .|+...++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67778888899988886 5677889999999999999999999999999986 3555677888999
Q ss_pred HH-HHCCC--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1028 ME-EGLGN--VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1028 iy-~~lG~--yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++ ...|+ +++|+.++++++++. +....++++||.++...|+|++|+.++++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 67787 599999999999873 3455788999999999999999999999998653
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.55 E-value=7.9e-06 Score=93.03 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++..|..++..|+|.+|+..|++.+..+ +.++....+...+|.+|+..|++++|+..+++-+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 46789999999999999999999999998774 5677888899999999999999999999999998864 6
Q ss_pred CChhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCChhH--------------HHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYLLHLTCGPSHPNT--------------AATYINVA 1026 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lG-----------dyeeALey~~kALeL~~ki~G~dhP~~--------------a~a~~NLA 1026 (1888)
+|+....+++.+|.+++.+. ...+|+..|+..+..+ ++.+.. +.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888899999999877653 2346666666666542 333322 23345678
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHH
Q 000187 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSV 1081 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAl 1081 (1888)
..|...|.|..|+..++.+++-+ ++.+....++..|+.+|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999988876 677888889999999999999988554
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.6e-06 Score=105.28 Aligned_cols=198 Identities=21% Similarity=0.192 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER--- 967 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er--- 967 (1888)
.+...+.+.|.+|+..|.+.+.+..+..+++.-.... .+...++.++..+|..|..+++++.|+.+|++++.-.+.
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 3445556667777777888777777777766533221 112236777778999999999999999999998875433
Q ss_pred ---------hc------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000187 968 ---------EL------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 968 ---------~l------G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
.. .--.|..+..-..-|..++..|+|..|+.+|.+|+.. .|+.+..|.|.|.+|..+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHH
Confidence 10 0113344444556699999999999999999998873 488899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000187 1033 GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 1112 (1888)
Q Consensus 1033 G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L 1112 (1888)
|++..|+..++.++++ ++.....|..-|.++..+.+|++|++.|+++++. ++...++..++...
T Consensus 406 ~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRC 469 (539)
T ss_pred hhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHH
Confidence 9999999999998887 4667888999999999999999999999999854 35555566655544
Q ss_pred H
Q 000187 1113 E 1113 (1888)
Q Consensus 1113 ~ 1113 (1888)
.
T Consensus 470 ~ 470 (539)
T KOG0548|consen 470 V 470 (539)
T ss_pred H
Confidence 3
No 88
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.54 E-value=3.6e-06 Score=93.04 Aligned_cols=127 Identities=16% Similarity=0.121 Sum_probs=102.6
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.++..+.+++++|.+|...|++++|+.+|++++.+. ++++....++.++|.+|..+|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 455677889999999999999999999999999863 3344556789999999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000187 1052 LLGPDHIQTAASYHAIAIALSL-------MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~-------lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+.....+..+|.+|.. .++++.|+..+++|++++++.+..++.....+..|+..
T Consensus 103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 2234455566666655 45688899999999999998888777777777777754
No 89
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.53 E-value=1.6e-06 Score=90.95 Aligned_cols=103 Identities=23% Similarity=0.221 Sum_probs=91.1
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+|.....+..+|.++...|++++|+.++++++.+ ++.....+.++|.+|..+|++++|+.++++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 5666678899999999999999999999998875 3556788999999999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|.....++++|.+|...|++++|+.+|++++++.
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35567778999999999999999999999999874
No 90
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.3e-06 Score=99.24 Aligned_cols=250 Identities=14% Similarity=0.086 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+|.+++..|++++|+..|++++-+ +|.....+-..|.++.+.|+++.-..+-...+.+..
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~------ 297 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK------ 297 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh------
Confidence 345667789999999999999999998765 677788888899999999999876665555544421
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.++.-+.--+...+..++|..|+.+..+++.. .+.....|..-|.++..+|+.++|+-.|+.|..+.
T Consensus 298 --~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--- 364 (564)
T KOG1174|consen 298 --YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--- 364 (564)
T ss_pred --cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---
Confidence 22333444566677888999999999998875 23334566778999999999999999999888764
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH------hcCC----CCHHHHHHHHHHH--HH-----HHH
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA------KLGP----DDLRTQDAAAWLE--YF-----ESK 1115 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk------~LG~----dh~~tl~a~~~La--~L-----~qk 1115 (1888)
|....+|..|-..|...|.+++|....+.++..+.+ .+|. .++.+.+-...+. .+ +.+
T Consensus 365 -----p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 365 -----PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred -----hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 456678888888999999999999988888876643 1221 1122211111110 00 001
Q ss_pred HH-HHHHHH-HhcCCCCchhh---hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1116 AF-EQQEAA-RNGTRKPDASI---ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1116 a~-e~AeAl-~~~~~~~~~~~---as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
++ ..++-. .++........ ...+. .-..+...||++...+..+++|+.+|..|+.+..+
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~-~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIF-PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhc-cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 11 111111 11111111110 11111 12346788999999999999999999999987665
No 91
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.51 E-value=2.6e-06 Score=92.40 Aligned_cols=102 Identities=15% Similarity=0.004 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000187 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
++.....+.+|..++..|++++|..+|+-.+.+ +|.....+++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 667788999999999999999999999988876 5778899999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+++ ...+.++|.+|...|+.+.|+..|+.|+..+
T Consensus 99 ~~dd---p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 KIDA---PQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 3444 5678999999999999999999999999988
No 92
>PLN02789 farnesyltranstransferase
Probab=98.50 E-value=3e-05 Score=94.20 Aligned_cols=166 Identities=9% Similarity=0.148 Sum_probs=131.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-dyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
.++...+++++|+..+.+++.+ +|....++...+.++..+| ++++|+.++.+++.. +|....+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqa 108 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQI 108 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHH
Confidence 3455678899999999999987 6777789999999999999 689999999999876 4666778
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000187 980 YGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 980 y~nLA~ly~~lGdy--eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
+++.+.++..+++. ++++.++.+++.+ +|....++++.++++..+|+|++|++++.++|+..
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------- 172 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------- 172 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------
Confidence 99999999988874 7788888888875 46778899999999999999999999999999873
Q ss_pred HHHHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000187 1058 IQTAASYHAIAIALSLM---EAY----PLSVQHEQTTLQILRAKLGPDDLRTQ 1103 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~l---Gdy----deAle~lqkALeI~kk~LG~dh~~tl 1103 (1888)
+....++++.+.++..+ |.+ ++++.+..+++.+ .+++....
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-----~P~N~SaW 220 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-----NPRNESPW 220 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-----CCCCcCHH
Confidence 23356777777777665 333 4677777777654 45554443
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.49 E-value=4.4e-05 Score=97.87 Aligned_cols=267 Identities=18% Similarity=0.119 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------- 965 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~------- 965 (1888)
...++....++...|++++|++++.+.... -.+....+-..|.+|..+|++++|...|++.|...
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy 75 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYY 75 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence 345666778888999999999988775443 23445678888999999999999999888776541
Q ss_pred ---HHhcCCCC-------hhhHHHHHHHHHHHHH-------------cCCHHHH-HHHH---------------------
Q 000187 966 ---ERELGLDH-------PDTMKSYGDLAVFYYR-------------LQHTELA-LKYV--------------------- 1000 (1888)
Q Consensus 966 ---Er~lG~Dh-------p~ta~ay~nLA~ly~~-------------lGdyeeA-Ley~--------------------- 1000 (1888)
+..+|... ......|-.++..|-. -..|... ..|+
T Consensus 76 ~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d 155 (517)
T PF12569_consen 76 RGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKD 155 (517)
T ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcC
Confidence 11111100 0011111111111100 0001100 0111
Q ss_pred -------HHHHHHHHHhc---C---------CCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000187 1001 -------KRALYLLHLTC---G---------PSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 1001 -------~kALeL~~ki~---G---------~dhP~-~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
...+.-+...+ + ...|. ...+++.+|..|...|++++|+.++++|++.. |..
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~ 227 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTL 227 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCc
Confidence 11111111000 0 11232 35778899999999999999999999999873 445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCc
Q 000187 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHL 1140 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~ 1140 (1888)
...|...|.+|...|++.+|..+++.|..+ +..| +.+.+...-..+..+..+.++.....-...+. ....+..
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-----D~~D-RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~ 300 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEAREL-----DLAD-RYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLN 300 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-----Chhh-HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHH
Confidence 678899999999999999999999988743 3322 22233333334555666666544321111111 0011111
Q ss_pred cHH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCCC
Q 000187 1141 SVS--DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNL 1182 (1888)
Q Consensus 1141 sva--elL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~~ 1182 (1888)
.+. ......|.+|.++|++..|++.|....++.+.+..++-+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfD 344 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFD 344 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 111 122345888999999999999999999999888744443
No 94
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.48 E-value=3.4e-06 Score=93.18 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=90.4
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000187 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.++..+.+++.+|.+|...|++++|+.++++++.+. .+.+....++.++|.+|..+|++++|+.+|.+++.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 355667889999999999999999999999999874 234445678999999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHhcCCC
Q 000187 1010 TCGPSHPNTAATYINVAMMEEGLGN-------VHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~-------yeeAle~LekALei~ek~~G~d 1056 (1888)
+|.....+.++|.+|..+|+ +++|+.++++|++++++....+
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 34456667788888877655 6667777777777666554433
No 95
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.47 E-value=2.2e-05 Score=91.96 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++..|..++..|+|++|+..|++.+..+ +..+....+...||.+|+.++++++|+.++++.+.. -+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 36678889999999999999999999998863 455666778899999999999999999999999987 47
Q ss_pred CChhhHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHhcCCCCh--------------hHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQ---------------H---TELALKYVKRALYLLHLTCGPSHP--------------NTA 1019 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lG---------------d---yeeALey~~kALeL~~ki~G~dhP--------------~~a 1019 (1888)
+|+....+++.+|.++..++ + ..+|+..|++.+..+ ++.+ .++
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 78999999999999875554 1 234556666555432 2211 122
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000187 1020 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1020 ~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
.--..+|..|.+.|+|..|+.-++..++-+ ++.+....+++.+..+|..+|..++|.....
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 334567889999999999999999888765 6677888999999999999999999977653
No 96
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.3e-06 Score=100.87 Aligned_cols=165 Identities=18% Similarity=0.137 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
..+-.+...+...++..|+.+.+++++. ++....+|..-|.++..+|+.++|+..|+.|..+. |
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p 365 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------P 365 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------h
Confidence 3444456677888999999999998876 34445688889999999999999999999998873 6
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHH-HCCCHHHHHHHHHHHHHHHHHh
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA-MMEE-GLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA-~iy~-~lG~yeeAle~LekALei~ek~ 1052 (1888)
....+|..|-.+|...|++.+|+...+.++..+. ..+.++.-+| .++. .-.--++|..+++++|.+.
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--- 434 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--- 434 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccC---
Confidence 6788999999999999999999999888887652 3345555554 3333 2223478999999999873
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
|.+..+...+|.++...|.+..++..+++++.++
T Consensus 435 -----P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 435 -----PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred -----CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 5566677788999999999999999999999775
No 97
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.45 E-value=3e-05 Score=106.84 Aligned_cols=166 Identities=12% Similarity=0.008 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+..+...|...|++++|+.+|.+.... ...|+ ..+|+.|...|.+.|++++|..++.+..... .|. .|+
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~gi-~PD 578 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAET---HPI-DPD 578 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CCC-CCc
Confidence 333445666777777777777665432 11222 3456666666666677666666666554320 011 122
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
..+|+.|-..|.+.|++++|+++|++..+. | -+....+|+.+...|.+.|++++|+.+|++..+. |-
T Consensus 579 -~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----Gv 645 (1060)
T PLN03218 579 -HITVGALMKACANAGQVDRAKEVYQMIHEY-----N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----GV 645 (1060)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Confidence 245555556666666666666666655432 1 1112344555555666666666666666554432 10
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000187 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
.+ ...+|..|..+|...|++++|.+.+++.
T Consensus 646 -~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 646 -KP-DEVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred -CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 11 1234444555555555555555555543
No 98
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.44 E-value=8.4e-06 Score=109.48 Aligned_cols=172 Identities=11% Similarity=0.098 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+...+..+...+++|+++.|+..|++++.. .|....+...++.++...|++++|+.++++++. .
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--------p 97 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--------S 97 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--------C
Confidence 446778889999999999999999999987 344322223788888899999999999999982 1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+.....+..+|.+|..+|++++|+++|+++++. .|....++..++.+|...++.++|+..+++++...
T Consensus 98 ~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--- 166 (822)
T PRK14574 98 MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--- 166 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---
Confidence 2334455666788999999999999999999885 24445566678999999999999999999887763
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~t 1102 (1888)
+. ...+..++.++..++++.+|++.++++++. .+++...
T Consensus 167 --p~----~~~~l~layL~~~~~~~~~AL~~~ekll~~-----~P~n~e~ 205 (822)
T PRK14574 167 --PT----VQNYMTLSYLNRATDRNYDALQASSEAVRL-----APTSEEV 205 (822)
T ss_pred --cc----hHHHHHHHHHHHhcchHHHHHHHHHHHHHh-----CCCCHHH
Confidence 11 122233455665677777799999988865 4665544
No 99
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=4.9e-06 Score=90.28 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000187 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
......+|..|..++..|++++|..+|+-...+ ++..+..|++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 345678889999999999999999999887765 6777889999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000187 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.++....+.++|.||...|+.+.|.+.|+.|+..+
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35556789999999999999999999999999986
No 100
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.43 E-value=2.1e-06 Score=105.74 Aligned_cols=97 Identities=22% Similarity=0.246 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..|+..|..++..|+|++|+.+|.+|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~ 66 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------D 66 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 35778899999999999999999999987 4556679999999999999999999999999997 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
|....+|+++|.+|+.+|+|++|+.+|++++.+
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 566788999999999999999999999999986
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.40 E-value=2.6e-05 Score=101.07 Aligned_cols=171 Identities=14% Similarity=0.068 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|.+|-++|+.++|+..+..|-.+ .|.....|..+|.....+|++.+|.-+|.+||..
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~-------- 236 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA-------- 236 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------
Confidence 456888999999999999999888776554 2333367889999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~-a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.|.....+..-+.+|.+.|++..|+..|.+++.+. ++..-.. .......+..+...++-+.|+..++.++.....
T Consensus 237 ~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~----p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 237 NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD----PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC----CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 35557788899999999999999999999998864 2222222 233344577778888889999999999884333
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
.. ....+..+|.+|....+++.|+.....-..
T Consensus 313 ~~------~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 313 EA------SLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred cc------cccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 22 223345668888888999988887765444
No 102
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.40 E-value=4.5e-05 Score=105.17 Aligned_cols=240 Identities=14% Similarity=0.061 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+...|...|++++|.++|.+...... ...|+ ..+|..|..+|...|++++|..+|++.... |
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g-- 609 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----N-- 609 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--
Confidence 34555566788899999999999998765311 11233 357888889999999999999999887553 2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
-......|+.|...|...|++++|+.+|.+.... | -.|+ ..+|+.+...|...|++++|++++++..+.
T Consensus 610 i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~---- 678 (1060)
T PLN03218 610 IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ---- 678 (1060)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----
Confidence 2234567889999999999999999999987652 2 2344 457888899999999999999999987653
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCC
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~ 1130 (1888)
|. .....+|..|..+|.+.|++++|++.|++.... .+.++ ..+ +..|. +...+..+.+..+......
T Consensus 679 -G~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd-vvt---yN~LI~gy~k~G~~eeAlelf~eM~~- 747 (1060)
T PLN03218 679 -GI--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT-VST---MNALITALCEGNQLPKALEVLSEMKR- 747 (1060)
T ss_pred -CC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC-HHH---HHHHHHHHHHCCCHHHHHHHHHHHHH-
Confidence 11 123457888899999999999999998765421 12222 222 22222 3344444444433321110
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
..-.+. ..+|..+-..|.+.|++++|..++.++++.
T Consensus 748 -----~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 748 -----LGLCPN-TITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred -----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 011112 235666678899999999999999988753
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.39 E-value=1.6e-05 Score=100.02 Aligned_cols=243 Identities=11% Similarity=0.088 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+|..+.-++..++|..++...+..|.. +++....+...|..+..+|+-++|..+.+.++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 35677778888899999999999888874 3444457788999999999999999999988873 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000187 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
+....++.-+|.++....+|++|+++|+.|+.+ .++...++..++.+..++++|+-....-.+.|+..
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---- 139 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---- 139 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 445567888999999999999999999999985 35567888999999999999988777666666553
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000187 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 1133 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~ 1133 (1888)
+..-..|..+|.++...|++..|...+++-.......+......-.++..+-..........++++..... ....
T Consensus 140 ----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~-~e~~ 214 (700)
T KOG1156|consen 140 ----PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD-NEKQ 214 (700)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh-hhhH
Confidence 33445677788999999999999998876554443222222222222222222222222222222221110 1111
Q ss_pred hhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1134 ~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
+. +-......-+.++..++++++|...|...+....
T Consensus 215 i~-----Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP 250 (700)
T KOG1156|consen 215 IV-----DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP 250 (700)
T ss_pred HH-----HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc
Confidence 11 1122344567778889999999998887766443
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.39 E-value=8.2e-06 Score=108.67 Aligned_cols=220 Identities=6% Similarity=-0.065 Sum_probs=159.3
Q ss_pred cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 927 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 927 ~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.+...+....++..|..+|...+++++|+..++.++.. +|..+..|+.+|.+|+..+++.+|.-. .++.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 35567888899999999999999999999999988775 678889999999999999999888755 55544
Q ss_pred HHHhc-----------CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000187 1007 LHLTC-----------GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1007 ~~ki~-----------G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
..... -.+++..-.++..+|.||..+|++++|...|+++|++. +..+.++.++|..|...
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-
Confidence 32110 01133444688899999999999999999999999873 55678899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHH
Q 000187 1076 AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF--EQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH 1153 (1888)
Q Consensus 1076 dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~--e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y 1153 (1888)
++++|++++.+|+..+-..- ... .....|..++...-. +.-..+...... ...-..+.+++.-|-..|
T Consensus 164 dL~KA~~m~~KAV~~~i~~k--q~~--~~~e~W~k~~~~~~~d~d~f~~i~~ki~~------~~~~~~~~~~~~~l~~~y 233 (906)
T PRK14720 164 DKEKAITYLKKAIYRFIKKK--QYV--GIEEIWSKLVHYNSDDFDFFLRIERKVLG------HREFTRLVGLLEDLYEPY 233 (906)
T ss_pred hHHHHHHHHHHHHHHHHhhh--cch--HHHHHHHHHHhcCcccchHHHHHHHHHHh------hhccchhHHHHHHHHHHH
Confidence 99999999999998865431 111 112224444433221 111111111000 001124566788888889
Q ss_pred HHcCChHHHHHHHHHHHHHhcc
Q 000187 1154 DTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1154 ~~qGdyeEAleyyeKALeL~dS 1175 (1888)
....+|++++.++++++++..+
T Consensus 234 ~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 234 KALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred hhhhhhhHHHHHHHHHHhcCCc
Confidence 9999999999999999998766
No 105
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=1.9e-05 Score=85.01 Aligned_cols=137 Identities=22% Similarity=0.149 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..+|..+...+..++...+...+++.+.. .+..+....+...+|.+++..|++++|...|++++.. .
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~ 78 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----A 78 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----C
Confidence 34666777777777899999887767666554 2445556778889999999999999999999999884 2
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 1046 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekAL 1046 (1888)
.+......+...||.++...|++++|+..+... .+.+.....+..+|.+|...|++++|+..|++||
T Consensus 79 ~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 79 PDPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 344445577889999999999999999988552 2234445567779999999999999999999885
No 106
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.38 E-value=5.4e-06 Score=84.07 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
..++.+|..+..+|++++|+.++.+++.. .++++....+++.+|.+++..|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCCC
Confidence 46889999999999999999999999875 3455566788999999999999999999999999975 3556
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+....++.++|.+|..+|++++|+.+|+++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6667788999999999999999999999999874
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=5.9e-06 Score=86.63 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=88.4
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|.....+..+|.++...|++++|+.++++++.+ +|.....+.++|.+|..+|++++|+.+|++++++.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 81 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--- 81 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 4556678899999999999999999999998875 34556778899999999999999999999998863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+.....++.+|.+|...|++++|+.++++++++
T Consensus 82 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -----PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334667888999999999999999999999865
No 108
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.34 E-value=8.9e-06 Score=82.51 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++..|..++.+|++++|+.+|.+++.. .++++....++..+|.+++..|++++|+.++++++.. .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-----YPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-----CCC
Confidence 356788999999999999999999999875 2445555678999999999999999999999999876 345
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
++....++..+|.++..+|++++|+.++.+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 5566788999999999999999999999999886
No 109
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.32 E-value=9.3e-05 Score=99.68 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+|..+..+|++++|+++|+++++. .|....++..|+.+|...+++++|+..+++++..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-------- 165 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER-------- 165 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--------
Confidence 455566688999999999999999999987 3444567778899999999999999999988765
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.+. ...+..++.++..++++.+|++.|+++++.
T Consensus 166 dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 166 DPT-VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred Ccc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 233 223355566666678887799999988875
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.31 E-value=2e-05 Score=105.17 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=115.6
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-
Q 000187 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER- 967 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er- 967 (1888)
.......+..+...+...+++++|+..+.++++. +|.....|+.+|.+|++.+++.+|... .++.+...
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~ 96 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN 96 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc
Confidence 4445667777788898999999999999988876 677778999999999999998888766 44444221
Q ss_pred -----------hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000187 968 -----------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 968 -----------~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
.+ .+++..-.++..||.||..+|++++|...|++++++ .|..+.+++|+|..|... +++
T Consensus 97 ~~~~~ve~~~~~i-~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 97 LKWAIVEHICDKI-LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred cchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hHH
Confidence 11 123444568999999999999999999999999986 266678899999999999 999
Q ss_pred HHHHHHHHHHHHHH
Q 000187 1037 VALRYLHKALKCNQ 1050 (1888)
Q Consensus 1037 eAle~LekALei~e 1050 (1888)
+|+.++.+|+..+-
T Consensus 167 KA~~m~~KAV~~~i 180 (906)
T PRK14720 167 KAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998653
No 111
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.29 E-value=2.7e-05 Score=97.38 Aligned_cols=203 Identities=15% Similarity=0.013 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
++|+.-+.+.+.+++.++|+.+++++|..+ |.....|..+|.++..+++.+.|.+.|...+..+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-------- 715 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-------- 715 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC--------
Confidence 455555555555666666666665555542 3444555566666666666666655555544432
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000187 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
|..+-.+..|+.+-...|..-.|...|+++.-- .|..+..|...-++-.+.|+.+.|...+.+|++-+.
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp--- 784 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NPKNALLWLESIRMELRAGNKEQAELLMAKALQECP--- 784 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence 333334444555555555555555555555422 223333444444455556666666666666664431
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1096 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
..........||.---+.......+++... .-..++..+|..+....++++|.++|.+++++...
T Consensus 785 --~sg~LWaEaI~le~~~~rkTks~DALkkce-------------~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 785 --SSGLLWAEAIWLEPRPQRKTKSIDALKKCE-------------HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred --ccchhHHHHHHhccCcccchHHHHHHHhcc-------------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 111111111122111111111111222111 11125788999999999999999999999999988
Q ss_pred ccCCC
Q 000187 1176 FYQDN 1180 (1888)
Q Consensus 1176 i~q~~ 1180 (1888)
+++.|
T Consensus 850 ~GD~w 854 (913)
T KOG0495|consen 850 NGDAW 854 (913)
T ss_pred cchHH
Confidence 77433
No 112
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00052 Score=78.42 Aligned_cols=227 Identities=17% Similarity=0.067 Sum_probs=161.4
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000187 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 928 G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.++....+..|..-|.+|....+|++|...+++|...+|... .-...+.+|-..|.+...+..+.++..+|++|..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344455567788888999999999999999999999888742 233456889999999999999999999999999999
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000187 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
.+. | .|+++..-..-|--.....+.++|+.+|++++.+.+.- ....+....+...+++|.+...|.+|-..+.+-
T Consensus 102 ~E~-G--spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 102 VEC-G--SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHh-C--CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 874 3 35555444444444556778999999999999998653 233345567778899999999999999888887
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHH
Q 000187 1088 LQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRK 1166 (1888)
Q Consensus 1088 LeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyy 1166 (1888)
..+..+.-.-...--+.....|.+++...+.+++...........-. .+.-...+.+|=..| ..|+.+++...+
T Consensus 177 ~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~----~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 177 GVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL----KSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred hhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc----ChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 77776654444554455566677888888888876654322111111 112223344444444 468888776554
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.26 E-value=1.3e-05 Score=92.48 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=123.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
...+..+...|+-+++..+..+++.. ++.....+..+|......|+|.+|+..+++|..+ .|.-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTD 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCC
Confidence 44566777788888888777775432 4444445555899999999999999999999886 4667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
...|+.+|.+|.+.|+++.|..-|.+|+++. +.-..+++|+|..|.-.|+++.|..++..+...- .
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-----~- 199 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-----A- 199 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-----C-
Confidence 8889999999999999999999999999974 2234568999999999999999999998876431 2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000187 1057 HIQTAASYHAIAIALSLMEAYPLSVQHE 1084 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~l 1084 (1888)
.-..+.+||+.+....|+++.|....
T Consensus 200 --ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 200 --ADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred --CchHHHHHHHHHHhhcCChHHHHhhc
Confidence 23356788999999999999886643
No 114
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.26 E-value=6.1e-05 Score=100.82 Aligned_cols=239 Identities=12% Similarity=0.021 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---------
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI--------- 964 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I--------- 964 (1888)
..+..+...|...|++++|+.+|++.... | ..|+ ..+|..+..+|...|++++|...+..++..
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 34555567778888888888888876542 1 1222 235666666777777777776666555432
Q ss_pred -------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000187 965 -------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025 (1888)
Q Consensus 965 -------------------~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NL 1025 (1888)
+++.. .+ ...+|+.|...|...|+.++|+++|++.+.. | -.|+ ..+|..+
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~---~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-----g-~~Pd-~~T~~~l 432 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMP---RK-NLISWNALIAGYGNHGRGTKAVEMFERMIAE-----G-VAPN-HVTFLAV 432 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC---CC-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C-CCCC-HHHHHHH
Confidence 00000 01 1223444455555555555555555544321 1 1222 2234444
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000187 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 1105 (1888)
Q Consensus 1026 A~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a 1105 (1888)
-..+...|..++|.++|+...+.. |.. + ....|..+..+|.+.|++++|.+.+++.- ..+ +..+..+
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~----g~~-p-~~~~y~~li~~l~r~G~~~eA~~~~~~~~------~~p-~~~~~~~ 499 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENH----RIK-P-RAMHYACMIELLGREGLLDEAYAMIRRAP------FKP-TVNMWAA 499 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhc----CCC-C-CccchHhHHHHHHhcCCHHHHHHHHHHCC------CCC-CHHHHHH
Confidence 455555555555555555443321 111 1 12345555666666677666666554320 111 2222111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1106 AAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1106 ~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
+.. ++...+..+.++...+...... +.....|..|..+|.+.|++++|.+.+++..+.
T Consensus 500 Ll~-a~~~~g~~~~a~~~~~~l~~~~--------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 500 LLT-ACRIHKNLELGRLAAEKLYGMG--------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHH-HHHHcCCcHHHHHHHHHHhCCC--------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 111 1222333444333322211111 111235788899999999999999999876654
No 115
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.25 E-value=9.2e-06 Score=100.20 Aligned_cols=96 Identities=22% Similarity=0.226 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
+...|..++..|+|++|+.+|++|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 556788999999999999999999986 4556788999999999999999999999999986 355
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
...+|+++|.+|..+|+|++|+.+|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999874
No 116
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00037 Score=87.33 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=117.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-----------
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----------- 965 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~----------- 965 (1888)
|+.|.++++.+..++|+..+. .+ ++..-.++..-|.++|++|+|++|+..|+..+.-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GL----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-cc----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 788889999999999998887 11 12223467778999999999999999988763210
Q ss_pred ------------HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHH
Q 000187 966 ------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-------PNTAATYINVA 1026 (1888)
Q Consensus 966 ------------Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh-------P~~a~a~~NLA 1026 (1888)
.+.......++...++|.|.++...|+|.+|++.+++|+.++++.+..+. .++..+...|+
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 01111112235677899999999999999999999999999887654332 23456778899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000187 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~a 1070 (1888)
.+|+.+|+.++|...|...++.. -.+.+..|.+-+||-.+
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva~ 271 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVAL 271 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhhh
Confidence 99999999999999998877653 24555666666665544
No 117
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.22 E-value=5.3e-05 Score=101.37 Aligned_cols=196 Identities=12% Similarity=0.019 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
+|+.|...|.+.|++++|+.+|++.... |. .|+ ..+|..+...|...|++++|.+.+..++.. | .+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~-----g~-~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g--~~ 357 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS-----GV-SID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----G--FP 357 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----C--CC
Confidence 4444455555555555555544443221 11 111 224455555555555555555555544432 1 01
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000187 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
....+++.|..+|.+.|++++|...|++..+ + ...+|..|...|...|+.++|++.+++..+ .-..
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~---~g~~ 423 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR-------K----NLISWNALIAGYGNHGRGTKAVEMFERMIA---EGVA 423 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------C----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 1123455566666666666666666654321 1 224567777788888888888887776542 2223
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000187 1097 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTY 1168 (1888)
Q Consensus 1097 ~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeK 1168 (1888)
++.. |..+.. -++...+..+.+..+....... .+.......|..+...|.+.|++++|++.+++
T Consensus 424 Pd~~-T~~~ll-~a~~~~g~~~~a~~~f~~m~~~------~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 424 PNHV-TFLAVL-SACRYSGLSEQGWEIFQSMSEN------HRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred CCHH-HHHHHH-HHHhcCCcHHHHHHHHHHHHHh------cCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 3322 211111 1122233344433332211000 00001123567777778888888888877654
No 118
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=6.8e-05 Score=80.70 Aligned_cols=123 Identities=18% Similarity=0.093 Sum_probs=96.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000187 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 947 ~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
..++...+...+++.+.- ..+++....+...+|.+++..|++++|...|++++.- .++......+...||
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHH
Confidence 477777776666655543 3455566788999999999999999999999999873 233444456788899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
.++...|+|++|+..++.. .........+..+|.+|..+|++++|...|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998652 2334456677789999999999999999999874
No 119
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=1.3e-05 Score=93.98 Aligned_cols=122 Identities=22% Similarity=0.265 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+.-+-.-|.-++.-++|.+|+..|.+||.+ .|..+..|.|-|.+|.++|+|+.|++-++.|+.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 34556667788888999999999999999997 5777889999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChH
Q 000187 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyd 1078 (1888)
+|....+|..||.+|..+|++++|++.|++||++. ++ ......+|..+-..+++-.
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~---Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PD---NESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CC---cHHHHHHHHHHHHHhcCCC
Confidence 57889999999999999999999999999999984 33 2344445555544444433
No 120
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00012 Score=91.54 Aligned_cols=217 Identities=19% Similarity=0.135 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+|..-..+...|+|++|+....+.|.. +++.. .+.+.--.++.+++.|++|+.+.++-...
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~-----~pdd~---~a~~cKvValIq~~ky~~ALk~ikk~~~~--------- 75 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSI-----VPDDE---DAIRCKVVALIQLDKYEDALKLIKKNGAL--------- 75 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhc-----CCCcH---hhHhhhHhhhhhhhHHHHHHHHHHhcchh---------
Confidence 45555556777888999988888887765 23333 34444456677888888887544432221
Q ss_pred hhhHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---
Q 000187 974 PDTMKSY-GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN--- 1049 (1888)
Q Consensus 974 p~ta~ay-~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~--- 1049 (1888)
.+...+ +.-|.|+++++..++|+..+. .+ .... -.++.--|.++.++|+|++|+..|+..++-.
T Consensus 76 -~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~~-------~~~~---~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 76 -LVINSFFFEKAYCEYRLNKLDEALKTLK-GL-------DRLD---DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred -hhcchhhHHHHHHHHHcccHHHHHHHHh-cc-------cccc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 111111 567889999999999998877 11 1122 2234446888899999999999998664310
Q ss_pred --------------------HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000187 1050 --------------------QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1050 --------------------ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
.+........+-..+||.|.++...|+|.+|++.+++|+.++++.+..++...-+..
T Consensus 144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie--- 220 (652)
T KOG2376|consen 144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIE--- 220 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHH---
Confidence 000111112255778999999999999999999999999999887766543210000
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1110 EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1110 a~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
..+.-+.-.|+.++..+|+.++|...|...++.
T Consensus 221 ------------------------------~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 221 ------------------------------EELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 022334556677777788888888877766654
No 121
>PLN02789 farnesyltranstransferase
Probab=98.17 E-value=9.4e-05 Score=90.01 Aligned_cols=190 Identities=8% Similarity=0.026 Sum_probs=130.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000187 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023 (1888)
Q Consensus 945 y~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lG-dyeeALey~~kALeL~~ki~G~dhP~~a~a~~ 1023 (1888)
+...+++++|+..+.++|.+ +|....++...+.++..+| ++++|+.++.+++.. +|....+++
T Consensus 47 l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~ 110 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWH 110 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhH
Confidence 33456788999999999987 5777789999999999998 689999999999875 466677899
Q ss_pred HHHHHHHHCCCH--HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000187 1024 NVAMMEEGLGNV--HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1024 NLA~iy~~lG~y--eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~ 1101 (1888)
+.++++..+|+. ++++.++++++++. +....++...+.++...|++++|++++.+++++ .+.+..
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~d--------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----d~~N~s 177 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLD--------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-----DVRNNS 177 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----CCCchh
Confidence 999999999874 67888888888763 445678889999999999999999999999865 333333
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000187 1102 TQDAAAWLEYFE------SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1102 tl~a~~~La~L~------qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~----qGdyeEAleyyeKALe 1171 (1888)
......++.... ....+.+..+...... ..+.-..++++++.++.. .+++.+|+..+.+++.
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~--------~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL--------ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHHHHHHHH--------hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 222222221100 0000111111111110 011223468888888877 4566778888777655
No 122
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=0.00049 Score=87.72 Aligned_cols=132 Identities=19% Similarity=0.171 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HhcCCCChhhH----------
Q 000187 911 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE---RELGLDHPDTM---------- 977 (1888)
Q Consensus 911 EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E---r~lG~Dhp~ta---------- 977 (1888)
++...+.+|+++.+. .+...+-..|++.|.-+...+|.+.|++||+|+-...- +.+. ++|..+
T Consensus 837 Qs~g~w~eA~eiAE~---~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~-e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 837 QSQGMWSEAFEIAET---KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK-EYPKQIEQYVRRKRDE 912 (1416)
T ss_pred HhcccHHHHHHHHhh---ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH-hChHHHHHHHHhccch
Confidence 333344444444332 12233457899999999999999999999999622111 1111 122211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-----cCCC---------ChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLT-----CGPS---------HPNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki-----~G~d---------hP~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
..|...|.++...|+.+.|+.+|..|.+.+..+ .|.- .-+ ..+.+.||.+|...|++.+|+.+|.
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd-~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGD-KAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhccc-HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345667999999999999999999998876542 2221 112 2356679999999999999999987
Q ss_pred HHHH
Q 000187 1044 KALK 1047 (1888)
Q Consensus 1044 kALe 1047 (1888)
+|-.
T Consensus 992 rAqa 995 (1416)
T KOG3617|consen 992 RAQA 995 (1416)
T ss_pred HHHH
Confidence 6543
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=5.1e-05 Score=96.67 Aligned_cols=165 Identities=21% Similarity=0.256 Sum_probs=137.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
++.|...|++..=-.+|++|.++...+ .+.+.+.+|...+..++|.+|..+++.++.+ .+.....
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 466777788877788899998886544 3457788888888899999999999999998 4677889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
|+++|.+..+.++++.|.++|.+++.+ .|+.+.+++|++..|..+++-.+|...+++|+++.. ++..
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-----~~w~ 588 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-----QHWQ 588 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-----CCCe
Confidence 999999999999999999999999875 467789999999999999999999999999999852 2333
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000187 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
.+.|.-.+....|.+++|+..|++-+.+-+...
T Consensus 589 ---iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 589 ---IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred ---eeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 344445566789999999999999888876654
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00011 Score=85.02 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=116.7
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.|....+ .+++..|+..|+-+.++.+..+++.. ++.....+.-+|...++.|+|..|+..+++|..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 4555566 89999999999999999888887653 3333334444899999999999999999999875
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.|.-..+++.+|.+|.+.|++++|...|.+|+++. +.-..++.|||..|...|+++.|..++..++
T Consensus 130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~-- 195 (257)
T COG5010 130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAY-- 195 (257)
T ss_pred ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHH--
Confidence 35567889999999999999999999999999986 2234578899999999999999999998887
Q ss_pred HHHhcCCCCHHHHHH
Q 000187 1091 LRAKLGPDDLRTQDA 1105 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a 1105 (1888)
..+..+..+.+.
T Consensus 196 ---l~~~ad~~v~~N 207 (257)
T COG5010 196 ---LSPAADSRVRQN 207 (257)
T ss_pred ---hCCCCchHHHHH
Confidence 334555554433
No 125
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.12 E-value=4.1e-05 Score=80.30 Aligned_cols=102 Identities=27% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+.+.+|.++..+|+.++|+.+|++|+.. |.+.+....++..+|..|..+|++++|+..+++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46789999999999999999999999884 66777778899999999999999999999999987631 232
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000187 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALe 1047 (1888)
+....+...++.++..+|++++|+.++-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23455556689999999999999999887764
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.11 E-value=9.1e-05 Score=96.37 Aligned_cols=232 Identities=13% Similarity=0.014 Sum_probs=166.2
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000187 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly 987 (1888)
+...|+..|-+++.+ ++..+.++..||.+|+.-.+...|...|++|.++ ++..+.+.-.++..|
T Consensus 473 ~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adty 536 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTY 536 (1238)
T ss_pred hHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHh
Confidence 467788888888776 5678899999999999999999999999999886 455566777889999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000187 988 YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067 (1888)
Q Consensus 988 ~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nL 1067 (1888)
....+++.|.....++-+..... .....+..+|..|...+++..|+..|+.||+. +|....++..|
T Consensus 537 ae~~~we~a~~I~l~~~qka~a~------~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gL 602 (1238)
T KOG1127|consen 537 AEESTWEEAFEICLRAAQKAPAF------ACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGL 602 (1238)
T ss_pred hccccHHHHHHHHHHHhhhchHH------HHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHH
Confidence 99999999998854443322110 11233445899999999999999999999976 35667889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CchhhhhcCCccHHHHH
Q 000187 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK-PDASIASKGHLSVSDLL 1146 (1888)
Q Consensus 1068 A~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~-~~~~~as~~~~svaelL 1146 (1888)
|.+|...|+|..|++.+.+|.. +.|.+.-.. ...+.+.+..++..+++.....- ............+++.+
T Consensus 603 GeAY~~sGry~~AlKvF~kAs~-----LrP~s~y~~---fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 603 GEAYPESGRYSHALKVFTKASL-----LRPLSKYGR---FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred HHHHHhcCceehHHHhhhhhHh-----cCcHhHHHH---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999999998874 345543322 22223333333333322211100 00111122234678889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1147 DYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1147 ~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
..++..+..+|=+.+|..+++++++.+--+.
T Consensus 675 ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 675 IRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765544
No 127
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.09 E-value=5.3e-05 Score=97.51 Aligned_cols=145 Identities=14% Similarity=0.018 Sum_probs=107.0
Q ss_pred ccHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 000187 888 CSSADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQA-TIYQQKALD 963 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd---~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeA-l~~~eKAL~ 963 (1888)
+....|..++..|..++..++ +..|+.+|++|+++ +|..+.+|..|+.+|.....+... .....++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 445578889999999887766 77899999999987 678888888888888665333210 011122222
Q ss_pred HHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000187 964 INERELG-LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 964 I~Er~lG-~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
..++... ...+....+|.-+|..+...|++++|..++++|+++. |. +.+|..+|.+|...|++++|+++|
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2222111 1123345778888999999999999999999999862 33 568999999999999999999999
Q ss_pred HHHHHHH
Q 000187 1043 HKALKCN 1049 (1888)
Q Consensus 1043 ekALei~ 1049 (1888)
++|+.+.
T Consensus 477 ~~A~~L~ 483 (517)
T PRK10153 477 STAFNLR 483 (517)
T ss_pred HHHHhcC
Confidence 9999874
No 128
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.09 E-value=0.00049 Score=80.81 Aligned_cols=90 Identities=20% Similarity=0.189 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+..++..|..++..|+|++|+..|++.+... ++.+....+...||.+|+.++++++|+.++++.+.. -+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~-----~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----Cc
Confidence 34567888999999999999999999998863 455677788899999999999999999999999986 47
Q ss_pred CChhHHHHHHHHHHHHHHCC
Q 000187 1014 SHPNTAATYINVAMMEEGLG 1033 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG 1033 (1888)
+||....+++.+|.++..++
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred CCCchHHHHHHHHHhhhhcc
Confidence 89999999999998865543
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00025 Score=87.73 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=50.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000187 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
.|..++..|++++|+..++..+.. +|.....+...+.++...++..+|++.+++++.. .|....
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~~~~ 375 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPNSPL 375 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCccH
Confidence 344444444455444444442222 2333334444455555555555555555555443 122233
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000187 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
...++|..|...|++++|+.++++.+. +.|+....|..||..|..+|+..
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchH
Confidence 344455555555555555544444332 12333334444455555544443
No 130
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.08 E-value=2.1e-05 Score=73.33 Aligned_cols=96 Identities=36% Similarity=0.526 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
++..+|.+++.+|++++|+.++++++... +....++..+|.++...+++++|+.++.+++.+. +.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~-- 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-----PD-- 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Cc--
Confidence 57889999999999999999999998762 2233778899999999999999999999998752 22
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...++..+|.++...|++++|..+++++++.
T Consensus 67 -~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 67 -NAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred -chhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 2367888999999999999999999988764
No 131
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00022 Score=81.31 Aligned_cols=189 Identities=15% Similarity=0.031 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+...+..|....+|++|-..+.+|..-+++--. --..+.+|-..|++...+..+.++..+|+||..++.+..
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G--- 105 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG--- 105 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---
Confidence 445555567777888999999999999987765421 123467889999999999999999999999999998753
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|+++..-..-|--....-+.++|+.+|++++.+.+.- .........+..++.+|.++.+|.+|-..+.+-..+..+.
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 45555443444444566788999999999999998762 2223345677888999999999999988888766665554
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
-. .......+..+-.+|....||..|...++...+|
T Consensus 184 ~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 184 DA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 21 1222333444445566677999999999988765
No 132
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.03 E-value=0.00039 Score=79.34 Aligned_cols=143 Identities=20% Similarity=0.154 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+..++..|..++..|+|.+|+..|++.+..+ +.++....+...+|.+++..|++++|+..+++-+... +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 35678999999999999999999999988763 5577888999999999999999999999999988763 7
Q ss_pred CChhHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhcCCCcHHH--------------HHHHHHHH
Q 000187 1014 SHPNTAATYINVAMMEEGLG-----------NVHVALRYLHKALKCNQRLLGPDHIQT--------------AASYHAIA 1068 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG-----------~yeeAle~LekALei~ek~~G~d~~~t--------------A~al~nLA 1068 (1888)
+|+....+++.+|.++..+. ...+|+..|+..++.+ +++... +.--+.+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999876542 2346677776666544 444332 23334567
Q ss_pred HHHHHcCChHHHHHHHHHHHHHH
Q 000187 1069 IALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1069 ~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
..|...|.|..|+..++..++-+
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC
Confidence 78888888888888888776543
No 133
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.03 E-value=0.0004 Score=82.03 Aligned_cols=144 Identities=17% Similarity=0.118 Sum_probs=111.2
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000187 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
..+.-+.-...||.-+...|++..|+..|..|++. +|....+++.-|.+|..+|+-.-|+.-+.+.|++
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--- 101 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--- 101 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc---
Confidence 45555667788999999999999999999999985 6788899999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHcCChHHHH
Q 000187 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD--------HIQTAASYHAIAIALSLMEAYPLSV 1081 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d--------~~~tA~al~nLA~ay~~lGdydeAl 1081 (1888)
.|+...+....|.++..+|++++|..-|+..|...... |.. ...--..+.....-+...|++..|+
T Consensus 102 -----KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 102 -----KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred -----CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 47888889999999999999999999999988753110 000 0000111222233445568888888
Q ss_pred HHHHHHHHH
Q 000187 1082 QHEQTTLQI 1090 (1888)
Q Consensus 1082 e~lqkALeI 1090 (1888)
.+....++|
T Consensus 176 ~~i~~llEi 184 (504)
T KOG0624|consen 176 EMITHLLEI 184 (504)
T ss_pred HHHHHHHhc
Confidence 888777765
No 134
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.01 E-value=3.8e-05 Score=71.58 Aligned_cols=96 Identities=34% Similarity=0.471 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.++.+|..++..|++++|+.++++++... +....++..+|.+|...|++++|+.++++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 36778899999999999999999998762 2223678999999999999999999999998863 2
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....++..+|.++...|++++|..++.+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999998764
No 135
>PLN03077 Protein ECB2; Provisional
Probab=98.01 E-value=0.00083 Score=92.15 Aligned_cols=28 Identities=4% Similarity=-0.033 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1144 DLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1144 elL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
..|..|+.+|...|++++|.+..+...+
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4678889999999999999888876654
No 136
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.97 E-value=0.00062 Score=85.76 Aligned_cols=228 Identities=15% Similarity=0.080 Sum_probs=159.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000187 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
..|..++-..++++|+... |..-..+..+|..++..|+..+|...+.+|++. +|..-.++..--
T Consensus 562 ~hgt~Esl~Allqkav~~~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaav 625 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQC--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAV 625 (913)
T ss_pred hcCcHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHH
Confidence 4577888888888888763 333346777888899999999999999998875 344445555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 000187 985 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al 1064 (1888)
.+.+...+++.|..+|.+|.... -+..+|..-+.+...+++.++|+++++++|+.+ +..-..|
T Consensus 626 Kle~en~e~eraR~llakar~~s---------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~ 688 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSIS---------GTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLW 688 (913)
T ss_pred HHhhccccHHHHHHHHHHHhccC---------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHH
Confidence 66788899999999999998731 235667777888888999999999999999876 3455778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCCCchhhhhcCCccH
Q 000187 1065 HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA--FEQQEAARNGTRKPDASIASKGHLSV 1142 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka--~e~AeAl~~~~~~~~~~~as~~~~sv 1142 (1888)
..+|+++..+++.+.|...|...+..+ |...-... .|+.+..+. .-.+.+........ .+..
T Consensus 689 lmlGQi~e~~~~ie~aR~aY~~G~k~c-----P~~ipLWl---lLakleEk~~~~~rAR~ildrarlk--------NPk~ 752 (913)
T KOG0495|consen 689 LMLGQIEEQMENIEMAREAYLQGTKKC-----PNSIPLWL---LLAKLEEKDGQLVRARSILDRARLK--------NPKN 752 (913)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhccccC-----CCCchHHH---HHHHHHHHhcchhhHHHHHHHHHhc--------CCCc
Confidence 889999999999999988887666432 33332222 233333332 22233333222211 1122
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCC
Q 000187 1143 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNN 1181 (1888)
Q Consensus 1143 aelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~ 1181 (1888)
..++...-.+..+.|+.++|...+.+||+-+.+.+-.|.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWA 791 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHH
Confidence 334444455567889999999999999999888764443
No 137
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=9.5e-05 Score=89.89 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-------TAGAYSLLAVVLYHTGDFNQATIYQQKALD 963 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe-------~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~ 963 (1888)
..|...-+.|..++..|+|..|...|++|+..+....+.+..+ ...|+.|||.+|..+++|.+|+..+.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4467778889999999999999999999999876544333221 245788999999999999999999999988
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000187 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 964 I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
+ .+....+++.-|.+|..+|+|+.|+..|++|+++. |..-.+...|..+-...
T Consensus 286 ~--------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 286 L--------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKI 338 (397)
T ss_pred c--------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHH
Confidence 6 45667889999999999999999999999999862 33334444455554443
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.96 E-value=3.1e-05 Score=72.21 Aligned_cols=65 Identities=29% Similarity=0.543 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 000187 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYL 1006 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lG-dyeeALey~~kALeL 1006 (1888)
.+.+|..+|.+++.+|++++|+.+|.+|+.+ +|....+++++|.+|..+| ++++|+.++++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999997 5777889999999999999 799999999999986
No 139
>PLN03077 Protein ECB2; Provisional
Probab=97.95 E-value=0.00064 Score=93.27 Aligned_cols=97 Identities=7% Similarity=-0.002 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCcc
Q 000187 1062 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 1141 (1888)
Q Consensus 1062 ~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~s 1141 (1888)
.+|..+...|...|+.++|+..|++..+ .-..++.......+. ++...+..+.+..+...... ..... .
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T~~~ll~--a~~~~g~v~ea~~~f~~M~~-----~~gi~-P 623 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDEVTFISLLC--ACSRSGMVTQGLEYFHSMEE-----KYSIT-P 623 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCcccHHHHHH--HHhhcChHHHHHHHHHHHHH-----HhCCC-C
Confidence 4577778888888999988888876542 233344332211111 12333444444333221100 00001 1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000187 1142 VSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1142 vaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
-...|..+..+|.+.|++++|.+.+++.
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 2357899999999999999999998764
No 140
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.93 E-value=0.0036 Score=80.90 Aligned_cols=179 Identities=18% Similarity=0.129 Sum_probs=125.3
Q ss_pred HHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhc
Q 000187 895 QLLESSKTA-LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 895 ~LlelG~~~-l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l----GdyeeAl~~~eKAL~I~Er~l 969 (1888)
.++..++.+ -..+.+++++.|.++|+..+... .......+|..+|.+|..+ ....+=..+.+|+++.+++..
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 334344444 45688999999999999976433 2333457888888887654 344555667778888777775
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
..|..+. .+.++||..|..+++.+.|+.+.++++++. +.+ .+.++.-+|.++...+++.+|+...+.|++-+
T Consensus 472 ~~d~~dp-~~if~lalq~A~~R~l~sAl~~~~eaL~l~----~~~---~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 472 QFDPTDP-LVIFYLALQYAEQRQLTSALDYAREALALN----RGD---SAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred hcCCCCc-hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc----CCc---cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 5544333 677889999999999999999999999862 233 35667789999999999999999999999876
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000187 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
...++-. +.-..+-...++.++|+..+..-+.+++
T Consensus 544 ~~N~~l~--------~~~~~i~~~~~~~e~~l~t~~~~L~~we 578 (799)
T KOG4162|consen 544 GDNHVLM--------DGKIHIELTFNDREEALDTCIHKLALWE 578 (799)
T ss_pred hhhhhhc--------hhhhhhhhhcccHHHHHHHHHHHHHHHH
Confidence 4432211 1112222335666777766666666665
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.90 E-value=4.9e-05 Score=70.83 Aligned_cols=65 Identities=29% Similarity=0.492 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKALKC 1048 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-~yeeAle~LekALei 1048 (1888)
.+..|.++|.+++..|+|++|+.+|.+|+.+ +|....++.++|.+|..+| ++++|+.++++|+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3578899999999999999999999999997 4667889999999999999 799999999999986
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.90 E-value=0.00019 Score=85.12 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=90.0
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 936 GAYSLLAVVL-YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 936 ~ay~~LA~ly-~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
..++..|..+ +..|+|++|+..|++.+..+ ++++....+++.||.+|+..|++++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4556666655 56799999999999998874 5566677899999999999999999999999998753 67
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|+....++..+|.+|..+|++++|+.+|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999988765
No 143
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00013 Score=88.80 Aligned_cols=106 Identities=23% Similarity=0.285 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD-------TMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~-------ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
.....-|..|++.|+|..|...|++|+...+...+.+..+ ...++.|||.||..+++|.+|+.++.++|.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~-- 286 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL-- 286 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--
Confidence 3445568899999999999999999999887554443322 2467899999999999999999999999985
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1009 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1009 ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|....+++.-|.+|..+|+|+.|+..|++|+++.
T Consensus 287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34456788999999999999999999999999885
No 144
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.87 E-value=0.0019 Score=82.04 Aligned_cols=132 Identities=22% Similarity=0.256 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+-..|..+...|+-++|..+.+.++.. ++....||+.+|.++....+|++|+..|+.|+.+ .
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~ 105 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------E 105 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------C
Confidence 34445677788899999999999988864 3333469999999999999999999999999997 4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
++...++..|+.+..++++|+-....-.+.+++. |..-..|..+|..+...|++..|...++.-....
T Consensus 106 ~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 106 KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667889999999999999998877766666643 4445567778888888899988887776655443
No 145
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.0025 Score=78.39 Aligned_cols=251 Identities=13% Similarity=-0.022 Sum_probs=159.7
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCC--Chh----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--CCCh
Q 000187 903 ALDKGKLEDAVTYGTKALAKLVAVCGPY--HRM----TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG--LDHP 974 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~d--hpe----~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG--~Dhp 974 (1888)
-+..|-|++|.++-.+++...++....+ .+. ....+-++..+-...|++.+|++....+...+.+.-+ .-..
T Consensus 285 sm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 285 SMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 3467889999999999998866653222 111 1234556777888899999999999999999988655 2233
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+...+-+|.+++.-+.|+.|...|..|..+.... ...+.+-.|+|.+|.+.|+.+.-. ++++.. |
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~ 431 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLY----KALDLI----G 431 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----C
Confidence 456778899999999999999999999999875442 235667789999999988765433 333332 3
Q ss_pred CCc-------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000187 1055 PDH-------IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGT 1127 (1888)
Q Consensus 1055 ~d~-------~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~ 1127 (1888)
+.+ ...+.+++..|...+.++++.+|..++++.+++.... .....+...+..|..+..-.++..++.....
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 331 2345667777888889999999999999999886321 1122233333344443333322222221111
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q 000187 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGR--NVSTLKRKTY 1168 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGd--yeEAleyyeK 1168 (1888)
.....+....++.-..-....+..+|...|+ -+.+.+.|.+
T Consensus 510 pamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 510 PAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 1111111223333333344456667777777 5555555554
No 146
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00068 Score=86.56 Aligned_cols=161 Identities=18% Similarity=0.179 Sum_probs=113.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
|....+.|-+++|+.+|++.-+ |-.|-.+|..+|.+++|.+..+ . .|....-..
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE-------~---~DRiHLr~T 860 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAE-------T---KDRIHLRNT 860 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHh-------h---ccceehhhh
Confidence 3445677888888888877633 3445667888888887766543 2 344456688
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHhcCCCChhHH----------HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRAL----YLLHLTCGPSHPNTA----------ATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kAL----eL~~ki~G~dhP~~a----------~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
|++.|..+...++.+.|++||+++- ++.+.+ .. .|..+ ..|...|..+...|+.+.|+.+|..|
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL-~e-~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML-KE-YPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH-Hh-ChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 9999999999999999999999853 332221 11 12111 34566788899999999999999988
Q ss_pred HHHHHHh-----cCCC---------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1046 LKCNQRL-----LGPD---------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1046 Lei~ek~-----~G~d---------~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
-+.+... .|.. +-.. .+.+.||+.|...|++.+|+.+|.+|..
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7765332 1221 2223 3455789999999999999999988754
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=97.86 E-value=0.00059 Score=84.91 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc---C------CHHHHHHHHHHHH
Q 000187 895 QLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---G------DFNQATIYQQKAL 962 (1888)
Q Consensus 895 ~LlelG~~~l~qGd---~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l---G------dyeeAl~~~eKAL 962 (1888)
.++-.|...+.++. .+.|+.+|.+|+.. ...+|..+.+|..+|.+++.. | +..+|..+.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-----~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNK-----SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-----ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 66777877777665 45677778887733 134788899999999998875 2 2345556666666
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000187 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
++ ++.-+.++..+|.++...++++.|+..|++|+.+ .|+.+.+++..|+++...|+.++|++++
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55 3556788899999999999999999999999986 4778899999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHH-HHHHcCChHHHHHHHH
Q 000187 1043 HKALKCNQRLLGPDHIQTAASYHAIAI-ALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1043 ekALei~ek~~G~d~~~tA~al~nLA~-ay~~lGdydeAle~lq 1085 (1888)
++|+++. +. ..+.....+-. .| .....+.|+.+|-
T Consensus 396 ~~alrLs-----P~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 431 (458)
T PRK11906 396 DKSLQLE-----PR--RRKAVVIKECVDMY-VPNPLKNNIKLYY 431 (458)
T ss_pred HHHhccC-----ch--hhHHHHHHHHHHHH-cCCchhhhHHHHh
Confidence 9999874 21 12222223333 33 3456677777663
No 148
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.85 E-value=0.0002 Score=75.20 Aligned_cols=102 Identities=26% Similarity=0.209 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
.+.+++|.++..+|+.++|+.+|++|+.. |.+.+....++.++|..|..+|++++|+..+++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 35688999999999999999999999983 56667778899999999999999999999999987643 332
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
.........+|.++...|++++|+..+-.++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444555678999999999999998877663
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.84 E-value=6.3e-05 Score=73.29 Aligned_cols=84 Identities=26% Similarity=0.316 Sum_probs=66.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000187 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
++|++++|+.++++++..... .+ ....+..||.+|+.+|+|++|+.++++ +.+. +........+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 468999999999999988421 22 445777799999999999999999998 4332 23456667789
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 000187 985 VFYYRLQHTELALKYVKRA 1003 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kA 1003 (1888)
.++..+|++++|+.+|++|
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 150
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=0.0055 Score=76.30 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000187 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
+....+.+..|..++..|++++|+..++..+.. +|+........+.++...++..+|++.+++++.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----- 369 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL----- 369 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----
Confidence 345578899999999999999999999884442 4566666677899999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
.|.......++|.+|...|++.+|+..++..+.- .+.....|..||++|..+|+..+|...+.+.+.
T Consensus 370 ---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 370 ---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred ---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3454667788999999999999999999877653 344556788889999999888888777666553
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.81 E-value=0.00025 Score=84.04 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=89.9
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 978 KSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 978 ~ay~nLA~ly-~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
...++.|..+ ...|+|++|+..|++.+..+ ++++....+++.+|.+|...|++++|+.+|+++++.+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 5566677665 56799999999999998863 5566667889999999999999999999999999876 77
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++....+++.+|.+|..+|++++|...|++.++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999887654
No 152
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.80 E-value=0.0033 Score=66.81 Aligned_cols=173 Identities=27% Similarity=0.285 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
.......+..+...+.+..+...+..++.. .........+..++..+...+++..|+..+.+++.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 127 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----- 127 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC-----
Confidence 344555667788889999999888888764 123455678888899999999999998888888775211
Q ss_pred ChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~-ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
. .......+. ++...|+++.|..++.+++.+ .+........+...+..+...++++.|+..+.+++.....
T Consensus 128 -~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 128 -P--DLAEALLALGALYELGDYEEALELYEKALEL-----DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred -c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 1 222233333 889999999999999999552 1101234555666777788899999999999999887532
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
. ....+..++..+...+++..|+..+.+++...
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 1 34567788899999999999999998888664
No 153
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0004 Score=82.11 Aligned_cols=161 Identities=15% Similarity=0.090 Sum_probs=104.9
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 000187 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 981 (1888)
Q Consensus 902 ~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~ 981 (1888)
-++...+|..|+.+++-.+.+ +..+-...-.++|.+|+++|+|++|+..|.-+.. .++ --+....
T Consensus 31 dfls~rDytGAislLefk~~~-------~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~-------~~~-~~~el~v 95 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNL-------DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN-------KDD-APAELGV 95 (557)
T ss_pred HHHhcccchhHHHHHHHhhcc-------chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc-------cCC-CCcccch
Confidence 345677999999988877754 2222235667899999999999999998876544 112 2245668
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---------HHHhcCCC------C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000187 982 DLAVFYYRLQHTELALKYVKRALYL---------LHLTCGPS------H---PNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALey~~kALeL---------~~ki~G~d------h---P~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
|||.+++.+|.|.+|.....+|-.. ....++.. | .++..-...||.+....-.|++|++.|.
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998776554211 00111111 1 1122333445666555666677777766
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000187 1044 KALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1044 kALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
+.|.- .+.....-.++|.+|+++.-|+-+.+.++
T Consensus 176 rvL~d--------n~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 176 RVLQD--------NPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHhc--------ChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 66543 44555566678999999988887766554
No 154
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.80 E-value=0.012 Score=71.66 Aligned_cols=173 Identities=20% Similarity=0.137 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+......|..-+..|+|.+|+.+..++-+. ++.-..+|..-|.+-.++|+++.|-.|..+|-+..
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~----- 148 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA----- 148 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----
Confidence 34666677778888899999999999886443 22334567777889999999999999999887652
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC-- 1048 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei-- 1048 (1888)
..++...+...+.+...+|++..|..-..++++. ++.||... .-...+|...|+|.+.+.++.+.-+.
T Consensus 149 --~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr~~~vl---rLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 149 --GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPRHPEVL---RLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred --CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcCChHHH---HHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 1235667788899999999999999998888875 45566554 44677889999998888776533221
Q ss_pred -----------------HHHhc---C---------------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1049 -----------------NQRLL---G---------------PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1049 -----------------~ek~~---G---------------~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
..+.. | ..++ .+...+|.-+..+|++++|.+..++++.
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p---~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDP---ELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcCh---hHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 00100 0 1112 2333457778899999999999888874
No 155
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.79 E-value=0.0072 Score=79.61 Aligned_cols=219 Identities=14% Similarity=0.070 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
.|.|+|.++....+++.|...+.++..+ .|.....+...|.+....|+.-+++..+...-++.... ..-+
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSL--------dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~--gka~ 921 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSL--------DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKE--GKAK 921 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhc--------CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccc--cccc
Confidence 3444444444444444444444443332 34444555555555566666656655555544433221 1111
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000187 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALK--CNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALe--i~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
. ...+.+--.+....|++++.+...+++-. +..+.+-..++....+|...|.....++.|+.|.+.+.+.+.+++..
T Consensus 922 ~-f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k 1000 (1238)
T KOG1127|consen 922 K-FQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELK 1000 (1238)
T ss_pred h-hhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22233344445566666666655544322 11222234577888888889999999999999999999999999888
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1095 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
+..+............++..+.++.+........ ..+.+-.........-+++|+++.+.|++|+.+.+
T Consensus 1001 ~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~-----------~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~ 1069 (1238)
T KOG1127|consen 1001 LDESQYNVAKPDAGRLELSLGEFESAKKASWKEW-----------MEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISN 1069 (1238)
T ss_pred HhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc-----------hhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcc
Confidence 7766555433333333444455553332211110 01111111122222557999999999999999887
Q ss_pred ccc
Q 000187 1175 NFY 1177 (1888)
Q Consensus 1175 Si~ 1177 (1888)
+-.
T Consensus 1070 se~ 1072 (1238)
T KOG1127|consen 1070 SES 1072 (1238)
T ss_pred ccc
Confidence 643
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=0.0001 Score=71.77 Aligned_cols=83 Identities=25% Similarity=0.368 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000187 948 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 1027 (1888)
Q Consensus 948 lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~ 1027 (1888)
+|+|+.|+.++++++..... .+ ....+..||.+|+.+|+|++|+.++++ +.+. +........+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a~ 66 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLAR 66 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHHH
Confidence 68999999999999987421 22 445667799999999999999999998 3331 233555667799
Q ss_pred HHHHCCCHHHHHHHHHHH
Q 000187 1028 MEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 1028 iy~~lG~yeeAle~LekA 1045 (1888)
++..+|+|++|+.+|++|
T Consensus 67 ~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 67 CLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHTT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhcC
Confidence 999999999999999875
No 157
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.70 E-value=0.0012 Score=69.31 Aligned_cols=103 Identities=23% Similarity=0.217 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
..+.|-..|..+...|+++.|++.|.++|.+ -|..+.+|++.|..|..+|+.++|+.-+.+|+.+. |.
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~ 109 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GD 109 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cc
Confidence 3455666688888999999999999999998 36678899999999999999999999999999985 44
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.......+|..-|.+|..+|+.+.|..-|..|-.+
T Consensus 110 ~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 110 QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 44455689999999999999999999999999876
No 158
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.65 E-value=0.00035 Score=89.39 Aligned_cols=126 Identities=14% Similarity=0.200 Sum_probs=105.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000187 942 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a 1021 (1888)
+++|..+||.-.=..+|+||.++.... .+.+...+|......++|.+|.+++++++++ .|....+
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 356667777777778888888886543 3456677888888899999999999999987 3667788
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1022 ~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|+++|.+..++++++.|..+|..++.+. |..+.+++|++.+|..+|+-.+|...+++|++-
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL~--------Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTLE--------PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhcC--------CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 9999999999999999999999988763 556789999999999999999999999999854
No 159
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.015 Score=67.45 Aligned_cols=160 Identities=18% Similarity=0.120 Sum_probs=115.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
..+.+..|+.+-|..++++....+ |..-++...-|+.+...|.+++|+++|...+. .| |....+
T Consensus 59 ~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~-------dd-pt~~v~ 122 (289)
T KOG3060|consen 59 FIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE-------DD-PTDTVI 122 (289)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc-------cC-cchhHH
Confidence 456678899999888887755442 22234566778888889999999888876654 33 443444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
|-.--.+...+|+.-+|++.+..-++.+ +....++..++.+|...|+|++|.-||++.+-+. |.
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~--------P~ 186 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ--------PF 186 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------CC
Confidence 4443345667888889998888777654 2335678889999999999999999999988653 33
Q ss_pred HHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHH
Q 000187 1060 TAASYHAIAIALSLME---AYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lG---dydeAle~lqkALeI~ 1091 (1888)
...++..+|.+++.+| ++..|..+|.+|+++.
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 4455667787777665 5677889999998764
No 160
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.61 E-value=0.044 Score=72.53 Aligned_cols=262 Identities=13% Similarity=-0.044 Sum_probs=149.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi-~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+..|.....+++|.+|..++.++......- .+......+.....-|.+....|++++|+.+.+.++...-. .....
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~ 495 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRS 495 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchh
Confidence 334566677899999999998887664431 01122234566667788999999999999999999886422 12233
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
-+.++..+|.+.+-.|++++|+.+.+++.++.+.. +.. .....+.+..+.++..+|+ .+..-.+++....+.....
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-~~~-~l~~~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~q~l~ 571 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-DVY-HLALWSLLQQSEILEAQGQ--VARAEQEKAFNLIREQHLE 571 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-ccH-HHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHhh
Confidence 45788899999999999999999999999998764 222 2334556677999999993 3333333443333333222
Q ss_pred CcH---HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000187 1056 DHI---QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1056 d~~---~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
..+ ....++..+..+|.+ ++.+..-...++.+........+. .......|+.+....++.+++..........
T Consensus 572 q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~-~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 572 QKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLL-SRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222 233344333444433 677777666666654333222221 1111124444433333333332211100000
Q ss_pred hhhhcCCccH-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000187 1133 SIASKGHLSV-SDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1133 ~~as~~~~sv-aelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
......+... +.++.........+||+++|..+..+.
T Consensus 648 ~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 648 LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 0111122222 222222223336789999998888773
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.00095 Score=86.25 Aligned_cols=136 Identities=17% Similarity=0.163 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHH
Q 000187 938 YSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVKRALYL 1006 (1888)
Q Consensus 938 y~~LA~ly~~lGd---yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdye--------eALey~~kALeL 1006 (1888)
++..|.-|...++ +..|+.++++|+++ +|+.+.+|..||.+|.....+. .|.+...+++.+
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 3344444444443 77899999999987 6788888888888876654332 233333332221
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000187 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1007 ~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
+..+....++.-+|.++...|++++|...|++|+++. + .+.+|..+|.+|...|++++|+++|++
T Consensus 414 ------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 414 ------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred ------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1123334667778999999999999999999999884 2 256889999999999999999999999
Q ss_pred HHHHHHHhcCCCCHH
Q 000187 1087 TLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1087 ALeI~kk~LG~dh~~ 1101 (1888)
|+. +.+.++.
T Consensus 479 A~~-----L~P~~pt 488 (517)
T PRK10153 479 AFN-----LRPGENT 488 (517)
T ss_pred HHh-----cCCCCch
Confidence 984 4677663
No 162
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.00083 Score=78.19 Aligned_cols=162 Identities=19% Similarity=0.164 Sum_probs=116.6
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000187 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
+...+|.+|++++.--. ...|.....+..||.+|++..+|..|...|.+...+ +|........-
T Consensus 21 I~d~ry~DaI~~l~s~~--------Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSEL--------ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHH--------hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 45567777777665433 335656678999999999999999999999887654 56666666666
Q ss_pred HHHHHHcCCHHHHHHHHHH----------HHHHHHHh-cCCC-----------C--hhHHHHHHHHHHHHHHCCCHHHHH
Q 000187 984 AVFYYRLQHTELALKYVKR----------ALYLLHLT-CGPS-----------H--PNTAATYINVAMMEEGLGNVHVAL 1039 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~k----------ALeL~~ki-~G~d-----------h--P~~a~a~~NLA~iy~~lG~yeeAl 1039 (1888)
|..++..+.+..|+..... .+.+-..+ +..+ - ...+.+.+|.|.++.+.|+|+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 7777777888777765433 22221111 1111 1 135677899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+-|+.|++.. | -.+ ..-+++|.+++..|+|+.|+.+..+.++
T Consensus 165 qkFqaAlqvs----G-yqp---llAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340|consen 165 QKFQAALQVS----G-YQP---LLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHHHHHHhhc----C-CCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999873 2 222 3446789999999999999999877664
No 163
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.011 Score=68.54 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=113.4
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000187 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
.+-++-++++.+.+.....- ..-++....|-.+..+....|+.+-|...+++...- + |..-.....-|..
T Consensus 26 rnseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----f----p~S~RV~~lkam~ 95 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----F----PGSKRVGKLKAML 95 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----C----CCChhHHHHHHHH
Confidence 35566677777766654432 223445567778888888889999888777654332 2 2333444556888
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000187 987 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 1066 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~n 1066 (1888)
+...|++++|+++|...++ ++|....++-.--.++..+|+--+|++.+.+-++.+ +....+++.
T Consensus 96 lEa~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~e 159 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHE 159 (289)
T ss_pred HHHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHH
Confidence 9999999999999998875 345555555555556677888889999888887765 234578999
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 000187 1067 IAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1067 LA~ay~~lGdydeAle~lqkAL 1088 (1888)
||.+|...|+|++|.-+|++.+
T Consensus 160 LaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999999999999887
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.54 E-value=0.00024 Score=65.56 Aligned_cols=60 Identities=23% Similarity=0.475 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
+.+|..++..|++++|+..|++++.. +|....++..+|.+++.+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999865 6788899999999999999999999999999986
No 165
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.51 E-value=0.0045 Score=83.67 Aligned_cols=164 Identities=16% Similarity=0.046 Sum_probs=123.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
..+++.+++++|.+.+++||....-.-+..-..++.+|.||-+.| |.-+.-.+.|++|++++. ....|
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd---------~~~V~ 1533 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD---------AYTVH 1533 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc---------hHHHH
Confidence 566788999999999999998642111122233456666666655 455666678888888753 34678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000187 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
..|.-+|...+++++|.++|+..++-+ + ....+|..+|..+..+.+-+.|...+.+||....+. +|
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF----~----q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~---eH--- 1599 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF----G----QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ---EH--- 1599 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh----c----chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh---hh---
Confidence 899999999999999999999887654 2 245677888999999999999999999999987542 23
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.......|++-++.|+.+.+...|+..+..
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 345556799999999999888777766543
No 166
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.49 E-value=0.22 Score=63.90 Aligned_cols=163 Identities=18% Similarity=0.114 Sum_probs=108.6
Q ss_pred hhHHHHhhhccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC
Q 000187 871 FRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD 950 (1888)
Q Consensus 871 F~~eDIlnl~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd 950 (1888)
-+.+.+..+-|....- .........|..|...|+++.|...|++|+..- | ..-.+++.+|..-|..-....+
T Consensus 369 tyteAv~~vdP~ka~G----s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y-~~v~dLa~vw~~waemElrh~~ 440 (835)
T KOG2047|consen 369 TYTEAVKTVDPKKAVG----SPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---Y-KTVEDLAEVWCAWAEMELRHEN 440 (835)
T ss_pred HHHHHHHccCcccCCC----ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---c-cchHHHHHHHHHHHHHHHhhhh
Confidence 3444566666654322 224566777899999999999999999998751 1 1123568889999999999999
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCCChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000187 951 FNQATIYQQKALDINER----ELGLDHPDT------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020 (1888)
Q Consensus 951 yeeAl~~~eKAL~I~Er----~lG~Dhp~t------a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~ 1020 (1888)
++.|+.+.++|+.+-.. .+...+|-. ...+..++.+....|-++.....|.+.+++... .|.
T Consensus 441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-----TPq--- 512 (835)
T KOG2047|consen 441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-----TPQ--- 512 (835)
T ss_pred HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-----CHH---
Confidence 99999999998765222 111222322 234555666677777777777778887776422 233
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1021 TYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+..|.|+.+....-+++|.+.|++.+.++
T Consensus 513 ii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 513 IIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 34566777777777777777777666554
No 167
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.48 E-value=0.017 Score=67.53 Aligned_cols=174 Identities=18% Similarity=0.210 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..|++.|...++.|++++|+.+|+.....+ +..+..-.+...++.+++..++|++|+.+..+-+..+ +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 6789999999999999999999999876442 3445556789999999999999999999999888874 66
Q ss_pred ChhhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChh--------------HHHHHHHHHHHHHHCC
Q 000187 973 HPDTMKSYGDLAVFYYRL-----QHTELALKYVKRALYLLHLTCGPSHPN--------------TAATYINVAMMEEGLG 1033 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~l-----GdyeeALey~~kALeL~~ki~G~dhP~--------------~a~a~~NLA~iy~~lG 1033 (1888)
|++...+++..|+.++.. .+...+...+...-++..+. ++.+- .+.--..+|..|.+.|
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888887654 22333333333322222221 22211 1222345788999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000187 1034 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083 (1888)
Q Consensus 1034 ~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~ 1083 (1888)
.|-.|+..+++.++-+ ++...+-.++..|..+|..+|-.++|...
T Consensus 182 ~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 182 AYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred ChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999999999888765 34455667888899999999999988654
No 168
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.48 E-value=0.018 Score=73.01 Aligned_cols=280 Identities=17% Similarity=0.110 Sum_probs=146.5
Q ss_pred hhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000187 885 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTK------ALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 958 (1888)
Q Consensus 885 ~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~ee------AL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~ 958 (1888)
++....-.+..|-..|..|-...++++|+++|++ |+++.+-.+ ...+...-..-|.-+.+.|+++.|+.+|
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daainhf 729 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAAINHF 729 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHHHHHH
Confidence 3333333344444445666777888999988875 444433322 2223333344466677788888888776
Q ss_pred HHH-------------------HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH------HHH--------
Q 000187 959 QKA-------------------LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR------ALY-------- 1005 (1888)
Q Consensus 959 eKA-------------------L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~k------ALe-------- 1005 (1888)
-+| +.+.+.+. |.......|..+|.-|...|+|+-|.++|-+ |+.
T Consensus 730 iea~~~~kaieaai~akew~kai~ildniq--dqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 730 IEANCLIKAIEAAIGAKEWKKAISILDNIQ--DQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHhhhHHHHHHHHhhhhhhhhhHhHHHHhh--hhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccH
Confidence 543 22222111 1111223455677778888888888776643 333
Q ss_pred -----HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHHhc---------CCCcHH-HHHHH
Q 000187 1006 -----LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL------HKALKCNQRLL---------GPDHIQ-TAASY 1064 (1888)
Q Consensus 1006 -----L~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~L------ekALei~ek~~---------G~d~~~-tA~al 1064 (1888)
+..+..|+ ..+...|..-|.-+...|+|.+|.++| .+|+.++.+.- +..|+. ...++
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 33333333 235566777777788889988888776 46666654431 111111 23455
Q ss_pred HHHHHHHHHcCChHHHHHHHHH-------------------HHHHHHHhcCCCCHHHHHHHHHHHHH--------HHHHH
Q 000187 1065 HAIAIALSLMEAYPLSVQHEQT-------------------TLQILRAKLGPDDLRTQDAAAWLEYF--------ESKAF 1117 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqk-------------------ALeI~kk~LG~dh~~tl~a~~~La~L--------~qka~ 1117 (1888)
..+|.-|...|+.+.|..+|.+ |+.|.+...|.+-.. ..+..|...+ ..+.+
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k-~v~flwaksiggdaavkllnk~g 964 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEK-HVAFLWAKSIGGDAAVKLLNKHG 964 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHH-HHHHHHHHhhCcHHHHHHHHhhh
Confidence 5677777777777777666554 444444444443221 1122222111 11111
Q ss_pred HHHHHHH----hcCCCCc---hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1118 EQQEAAR----NGTRKPD---ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1118 e~AeAl~----~~~~~~~---~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
-...+.. ....... ..++.++ ...++...++..+...|++++|-++|-.++++..
T Consensus 965 ll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 965 LLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 1111000 0000000 0111111 2233455667777889999999999999998753
No 169
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.47 E-value=0.0035 Score=65.82 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=86.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
+-.-|.++...|+.+.|++.|.+|+.++ |..+.+|+|-|..|..+|+.++|+.-+++|+++. |+....
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trt 113 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRT 113 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchH
Confidence 4445677788899999999999999985 5678899999999999999999999999999984 444455
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...++...|.+|..+|+.+.|..-|+.|-++
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 6678899999999999999999999998876
No 170
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.47 E-value=0.0054 Score=69.28 Aligned_cols=205 Identities=12% Similarity=0.031 Sum_probs=133.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
..+.+..++..|.+|-.+|-..-|.--+.+++.+ .|.....++.||..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 3455777888899999999999999999999988 5788899999999999999999999999998886
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+|..-.+..|.|..+.--|+|+.|.+-+.+-... .+++|..+.-++ +-...-+..+|...+.+-.+
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLY----l~E~k~dP~~A~tnL~qR~~- 194 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLY----LNEQKLDPKQAKTNLKQRAE- 194 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHH----HHHhhCCHHHHHHHHHHHHH-
Confidence 4566677888999999999999998866543322 244554332221 11223355666655433221
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1091 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
.+..+...+.....+|..+..+.. .+.+...+. +...... .+.++|+++|..|...|+.++|...|+-|+
T Consensus 195 ---~~d~e~WG~~iV~~yLgkiS~e~l--~~~~~a~a~--~n~~~Ae---~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 195 ---KSDKEQWGWNIVEFYLGKISEETL--MERLKADAT--DNTSLAE---HLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred ---hccHhhhhHHHHHHHHhhccHHHH--HHHHHhhcc--chHHHHH---HHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111111112222222332221111 111111111 1111111 466799999999999999999999999877
Q ss_pred H
Q 000187 1171 K 1171 (1888)
Q Consensus 1171 e 1171 (1888)
.
T Consensus 265 a 265 (297)
T COG4785 265 A 265 (297)
T ss_pred H
Confidence 5
No 171
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.45 E-value=0.016 Score=69.43 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=97.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh--cCCCChh----
Q 000187 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERE--LGLDHPD---- 975 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-dyeeAl~~~eKAL~I~Er~--lG~Dhp~---- 975 (1888)
.+.+|+++.|..++.++-.+............+..+++.|.-.+..+ ++++|..++++|+++++.. ....+++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999999887642222223456888999999999999 9999999999999998651 1223333
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...++..|+.+|...+.++...+ ..+++...+.-+| +||.+... .+-.+. ..++.+++.+.+.+.+.-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~L--~l~il~-~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFLL--KLEILL-KSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHHH--HHHHHh-ccCChhHHHHHHHHHHHh
Confidence 34678889999999888765444 4445555544333 45554322 222222 277888888888777654
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.41 E-value=0.00045 Score=63.75 Aligned_cols=60 Identities=33% Similarity=0.464 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 939 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 939 ~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+.+|..++..|++++|+..|++++.. +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999874 5888999999999999999999999999999975
No 173
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.031 Score=66.85 Aligned_cols=129 Identities=22% Similarity=0.178 Sum_probs=84.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------HHHH
Q 000187 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD----------INER 967 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~----------I~Er 967 (1888)
-+|..++..|+|++|+..|.-+... ++ -.+....+||.+++.+|.|.+|.....+|-. ++-+
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~-------~~-~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNK-------DD-APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhcc-------CC-CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 3578888999999999988776542 12 2246788999999999999999887766511 1111
Q ss_pred hcCCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 000187 968 ELGLD---------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 1038 (1888)
Q Consensus 968 ~lG~D---------hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeA 1038 (1888)
. +.. -.++..-...||.+++.+-.|++|++.|.+.+. +.|.....-.++|.+|.++.-|+-+
T Consensus 134 l-ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 134 L-NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred h-CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhH
Confidence 1 110 012223345567777777778888887777764 3566666666677777777777766
Q ss_pred HHHHH
Q 000187 1039 LRYLH 1043 (1888)
Q Consensus 1039 le~Le 1043 (1888)
.+.+.
T Consensus 205 qevl~ 209 (557)
T KOG3785|consen 205 QEVLK 209 (557)
T ss_pred HHHHH
Confidence 55543
No 174
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.40 E-value=0.0068 Score=78.25 Aligned_cols=147 Identities=20% Similarity=0.102 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000187 888 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
+.+.....++.+|+.|-..|++++|++++++|+.. .|.....|...|.+|-+.|++.+|...++.|-.+-
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-- 258 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-- 258 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--
Confidence 33445677888899999999999999999999986 57778899999999999999999999999887651
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CC-C---ChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000187 968 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC-GP-S---HPNTAATYINVAMMEEGLGNVHVALRYL 1042 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~-G~-d---hP~~a~a~~NLA~iy~~lG~yeeAle~L 1042 (1888)
..--..-...+.++.+.|+.++|.+.+..-. .-. ++ . .-...+.....|.+|.++|++..|+..|
T Consensus 259 ------~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft----r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 259 ------LADRYINSKCAKYLLRAGRIEEAEKTASLFT----REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred ------hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc----CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111233456778889999999987654322 111 00 0 1122445567799999999999999999
Q ss_pred HHHHHHHHHhcC
Q 000187 1043 HKALKCNQRLLG 1054 (1888)
Q Consensus 1043 ekALei~ek~~G 1054 (1888)
...++++.....
T Consensus 329 ~~v~k~f~~~~~ 340 (517)
T PF12569_consen 329 HAVLKHFDDFEE 340 (517)
T ss_pred HHHHHHHHHHhc
Confidence 999999887743
No 175
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.0014 Score=76.84 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..+|+.|..++..|+|.+|...|..-+..+ +.....+.++++||.+++.+|+|+.|...|..++.- -+
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P 209 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YP 209 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CC
Confidence 45669999999999999999999999888763 667788899999999999999999999999988874 36
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+++....+++.||.+...+|+.++|-..|++.+.-
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999998874
No 176
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.38 E-value=0.00058 Score=84.85 Aligned_cols=72 Identities=22% Similarity=0.175 Sum_probs=64.6
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
..|....+++|+|..|+.+|+|++|+.+|++|+++ .++++....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35778899999999999999999999999999997 4555555567999999999999999999999999997
No 177
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.016 Score=66.39 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=98.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000187 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~ 1020 (1888)
-|.+|....++..|-..|.+|-.+..+. | +..+.+.+|...+.+|... +.++|..++++|++|+... |. -...+.
T Consensus 40 Aan~yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~-Gr-f~~aAk 114 (288)
T KOG1586|consen 40 AANMYKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM-GR-FTMAAK 114 (288)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh-hH-HHHHHh
Confidence 3444555556666666677776665553 2 3345677888877777655 9999999999999998764 21 223455
Q ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1021 TYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQ-TAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1021 a~~NLA~iy~~l-G~yeeAle~LekALei~ek~~G~d~~~-tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
-+..||.+|..- .++++|+.+|++|-+.+.. ..... .-.++...|..-..+++|.+|+..|++..
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789998754 8999999999999887642 22222 23567777888888899999988887654
No 178
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.35 E-value=0.003 Score=78.90 Aligned_cols=116 Identities=24% Similarity=0.204 Sum_probs=96.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
..+...++++.|+.++++.... +|+ +...||.+|...++..+|+.++++++.. .|.....+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 3444567889888888875443 344 4566899999999999999999999953 34557788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000187 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
...|.++...++++.|+.+.++|..+ .|....+|..||.+|..+|+|+.|+..++
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88999999999999999999999986 37788999999999999999999997665
No 179
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0093 Score=73.66 Aligned_cols=199 Identities=17% Similarity=0.100 Sum_probs=147.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000187 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~--dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
...-+-.|++.+|++-...+.+.+.+.-++ .....+...+.+|......+.|+.|...|..|+...+.. .-.+
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a 404 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQA 404 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHH
Confidence 344566899999999999999888776442 222346677888888888999999999999999886542 2245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH-------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh-------P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+-.|||..|.+.++-+. +.++++.. |+.| -..+.+++-.|.....++++.||..++++.|++..
T Consensus 405 ~~nlnlAi~YL~~~~~ed----~y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman 476 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAED----LYKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN 476 (629)
T ss_pred HHHHhHHHHHHHhccHHH----HHHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 666789999999876543 34444432 3332 23456777788888999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 1115 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk 1115 (1888)
.. .....++..+..|+.+..-.|+..++.+..+-+++..++. +|++-.+.....+..+.+.
T Consensus 477 ae--d~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~~a 537 (629)
T KOG2300|consen 477 AE--DLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLYQA 537 (629)
T ss_pred hh--hHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHHHH
Confidence 21 2234567778889999999999999999999999998775 6777666666655555443
No 180
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.34 E-value=0.0003 Score=58.76 Aligned_cols=42 Identities=31% Similarity=0.406 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
++.++++||.+|..+|++++|+.++++++.+.+.++|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 467899999999999999999999999999999999999985
No 181
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.33 E-value=0.00068 Score=84.28 Aligned_cols=72 Identities=18% Similarity=0.138 Sum_probs=64.0
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
..|..+.+++++|.+|+.+|+|++|+..|++||.+ .+++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35677889999999999999999999999999998 3444444467999999999999999999999999986
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.0032 Score=73.90 Aligned_cols=102 Identities=22% Similarity=0.177 Sum_probs=92.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
+++.|.-++..|+|..|...|++-+.- .+++..+..+++.||.+++.+|+|+.|...|..+..- -++||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCC
Confidence 788899999999999999999988876 4678889999999999999999999999999998874 367888
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
...+++.||.++.++|+.++|...|++.++-+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999988765
No 183
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.23 E-value=0.021 Score=60.76 Aligned_cols=172 Identities=26% Similarity=0.291 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV-VLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~-ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
....++..+..+...+++..|+..+.+++.... .. .......+. ++...|+++.|..++.+++...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----- 160 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDP------DP--DLAEALLALGALYELGDYEEALELYEKALELD----- 160 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----
Confidence 355566677777788888888888888776421 11 123333444 8999999999999999995521
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.........+..++..+...++++.|+..+.+++...... ....+.+++..+...+++++|+..+..++....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 1012455666777777889999999999999999864321 456788899999999999999999999998753
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
. ....+..++..+...+.++.|...+.+++...
T Consensus 234 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 234 D--------NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred c--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 34556667777777778999999888887654
No 184
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.22 E-value=0.00051 Score=57.41 Aligned_cols=42 Identities=43% Similarity=0.566 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
++.++.+||.+|..+|++++|+.++++++.+.++++|.+||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999985
No 185
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.22 E-value=0.0025 Score=76.81 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=111.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
+-.|.+++..|++++|+.++.+. ....+...+-.+|..+++++.|...++++-.+ .. +.
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~e---D~ 164 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DE---DS 164 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SC---CH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC---cH
Confidence 44567777889999888877653 12356667778999999999999877665432 22 23
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000187 977 MKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 977 a~ay~nLA~ly~~lG--dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+..-.|++....| ++.+|..+|++... ..+....+++.+|.++..+|+|++|...+++|+..
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------ 230 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK------ 230 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------
Confidence 333344455555555 58888888887432 12344677889999999999999999999998753
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000187 1055 PDHIQTAASYHAIAIALSLMEAYPL-SVQHEQTTLQILRAKLGPDDLRTQDAA 1106 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdyde-Ale~lqkALeI~kk~LG~dh~~tl~a~ 1106 (1888)
.+....++.|++.+...+|+..+ +.+++.+.. ...++|+.+....
T Consensus 231 --~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~-----~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 231 --DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK-----QSNPNHPLVKDLA 276 (290)
T ss_dssp ---CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH-----HHTTTSHHHHHHH
T ss_pred --ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HhCCCChHHHHHH
Confidence 23456678899999999999844 444444332 2357887665443
No 186
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.024 Score=66.20 Aligned_cols=259 Identities=14% Similarity=0.012 Sum_probs=159.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH----HHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAK----LVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN------- 965 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l----~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~------- 965 (1888)
+++|+......++++|+..|.+.|.. -+.. -.+.-.+...|+.+|...|++..--+.....-...
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k 82 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPK 82 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchh
Confidence 56677778889999999999888864 1111 11233567789999999998754332222211111
Q ss_pred ---------HHhcCC-CCh-hh--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 966 ---------ERELGL-DHP-DT--------------------MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 966 ---------Er~lG~-Dhp-~t--------------------a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
++.-+. |+. +. ...-..+..+|+..|+|.+|+....-.+.-+++. .+
T Consensus 83 ~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DD 160 (421)
T COG5159 83 ITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--DD 160 (421)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cC
Confidence 111111 110 00 1122456788899999999999988888776664 34
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT-AASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t-A~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.+.....+..-..+|....+..++..-+..|-......+-+ ++. +..-..-|.+++...+|.-|..||-+|++-|.
T Consensus 161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCP--pqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft- 237 (421)
T COG5159 161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCP--PQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT- 237 (421)
T ss_pred ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--HHHHHHHHHhccceeeccccchhHHHHHHHHHhccc-
Confidence 56666777777888999888888888887776665554433 222 22222335566677899999999999998884
Q ss_pred hcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHH--HHcCChHHHHHHHHHH
Q 000187 1094 KLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1094 ~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y--~~qGdyeEAleyyeKA 1169 (1888)
++..|.....++.++. .+.....+...+......... .......+++..++.+| +...+|..|++-|..-
T Consensus 238 -~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~-----~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~e 311 (421)
T COG5159 238 -LLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLK-----HYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDE 311 (421)
T ss_pred -cccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHh-----hhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHH
Confidence 4567766665555543 334444444444433322111 01113345667777777 4467788888887654
Q ss_pred H
Q 000187 1170 A 1170 (1888)
Q Consensus 1170 L 1170 (1888)
+
T Consensus 312 l 312 (421)
T COG5159 312 L 312 (421)
T ss_pred h
Confidence 4
No 187
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.19 E-value=0.2 Score=64.21 Aligned_cols=193 Identities=15% Similarity=0.141 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKR------ALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~k------ALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
..|-..|.+|....++++|++||++ |+++.+..+. ..+...--..|.-+..+|+++.|+..|-+|-.+.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3456678888889999999999875 6666554331 223333444577778888888888777554332211
Q ss_pred ---hcCCC-------------cHHH-HHHHHHHHHHHHHcCChHHHHHHHHHH-------------------HHHHHHhc
Q 000187 1052 ---LLGPD-------------HIQT-AASYHAIAIALSLMEAYPLSVQHEQTT-------------------LQILRAKL 1095 (1888)
Q Consensus 1052 ---~~G~d-------------~~~t-A~al~nLA~ay~~lGdydeAle~lqkA-------------------LeI~kk~L 1095 (1888)
..|.. ...+ ...|-.+|.-|...|+|+.|.++|.++ ..+..+..
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhc
Confidence 11111 1111 223446777888888888888877553 22222333
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh---------------hhhcCCc-cHHHHHHHHHHHHHHcCCh
Q 000187 1096 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS---------------IASKGHL-SVSDLLDYINPSHDTKGRN 1159 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~---------------~as~~~~-svaelL~~Lg~~y~~qGdy 1159 (1888)
|+...........-..-.++.+..++.++.....++.. +..+.|. .+.+....++.-|...|+.
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 33322211111111111222233333222222222211 1122222 3556777888888888988
Q ss_pred HHHHHHHHHHHHHh
Q 000187 1160 VSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1160 eEAleyyeKALeL~ 1173 (1888)
..|...|-+|-..+
T Consensus 899 kaae~~flea~d~k 912 (1636)
T KOG3616|consen 899 KAAEEHFLEAGDFK 912 (1636)
T ss_pred hHHHHHHHhhhhHH
Confidence 88888776665443
No 188
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.18 E-value=0.0046 Score=77.23 Aligned_cols=118 Identities=16% Similarity=0.121 Sum_probs=95.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000187 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~ 1020 (1888)
|-.++...++++.|+.++++.... +|+ ....||.++...++-.+|++++++++.. .|....
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 445556678888888887775432 344 3455899999999999999999999952 355577
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000187 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
.+...|..|...++++.|+.+.++|..+. |....+++.||.+|..+|+|+.|+..+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 78889999999999999999999999884 5667889999999999999999997665
No 189
>PRK15331 chaperone protein SicA; Provisional
Probab=97.18 E-value=0.0024 Score=70.15 Aligned_cols=101 Identities=12% Similarity=-0.029 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000187 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.......+|..|..++++|++++|..+|+-.... ++.....+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4455778888999999999999999999765432 23334568999999999999999999999988763
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000187 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
.++| ..++.+|.||..+|+.+.|+.+|..++.
T Consensus 102 --~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3333 3468899999999999999999999987
No 190
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.026 Score=64.73 Aligned_cols=176 Identities=14% Similarity=0.025 Sum_probs=116.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+...|..|....+++.|=..|.+|-.+..+. | ...+.+.+|...+.+|..- +..+|+..+++|++|+.+.. . -..
T Consensus 37 ~~~Aan~yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~G-r-f~~ 111 (288)
T KOG1586|consen 37 YERAANMYKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMG-R-FTM 111 (288)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhh-H-HHH
Confidence 3344566666778888888999988887665 3 3335677887777777655 99999999999999987642 1 122
Q ss_pred hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000187 976 TMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 976 ta~ay~nLA~ly~~l-GdyeeALey~~kALeL~~ki~G~dh-P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
.+.-+..||.+|..- .++++|+.+|++|-+.+.. ... ...-.++...|..-..+++|.+|+..|++......
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~--- 185 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL--- 185 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 345567899988766 9999999999999988743 221 22234556667777788999999999987765431
Q ss_pred CCCcHH-HH-HHHHHHHHHHHHcCChHHHHH
Q 000187 1054 GPDHIQ-TA-ASYHAIAIALSLMEAYPLSVQ 1082 (1888)
Q Consensus 1054 G~d~~~-tA-~al~nLA~ay~~lGdydeAle 1082 (1888)
+..-.. .+ ..++.-|.++....|.-.+..
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ 216 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQR 216 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhcccHHHHHH
Confidence 111111 12 223344555555566544433
No 191
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.16 E-value=0.0049 Score=66.39 Aligned_cols=104 Identities=20% Similarity=0.317 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++..|...++.|+|++|++.|+.....+ +..+....+...|+.+|+..+++++|+..+++-+.+ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 5678999999999999999999998876653 334455678999999999999999999999999987 578
Q ss_pred ChhhHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQH---------------TELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGd---------------yeeALey~~kALeL 1006 (1888)
|+..-.+++..|++++.+.. ..+|+..|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999876 56666666666654
No 192
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.11 E-value=0.036 Score=67.75 Aligned_cols=182 Identities=18% Similarity=0.084 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH-------------
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK------------- 960 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eK------------- 960 (1888)
-.++..++..+.+|++..|..-..+++.. +|....++....++|...|++.+...+..+
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 34566788999999999999999888876 344445778888999999998877665433
Q ss_pred -----HHHHHHHhcCCC--Chh--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH------H---h
Q 000187 961 -----ALDINERELGLD--HPD--------------TMKSYGDLAVFYYRLQHTELALKYVKRALYLLH------L---T 1010 (1888)
Q Consensus 961 -----AL~I~Er~lG~D--hp~--------------ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~------k---i 1010 (1888)
|..-.-+....+ ... ....-..+|.-+...|++++|.+..++++.-.. . .
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l 305 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL 305 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhc
Confidence 222110101110 000 122334567788899999999999888875311 0 0
Q ss_pred -cC-------------CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 000187 1011 -CG-------------PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 1076 (1888)
Q Consensus 1011 -~G-------------~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGd 1076 (1888)
.+ ..||+....+..||..|.+.+.|.+|..+|+.|++... .+..+..+|.+|..+|+
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~---------s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP---------SASDYAELADALDQLGE 376 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC---------ChhhHHHHHHHHHHcCC
Confidence 00 12555556777788888888888888888887776531 23456667888888888
Q ss_pred hHHHHHHHHHHHHHHH
Q 000187 1077 YPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1077 ydeAle~lqkALeI~k 1092 (1888)
..+|.+..++++..+.
T Consensus 377 ~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 377 PEEAEQVRREALLLTR 392 (400)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8888888888885543
No 193
>PRK11906 transcriptional regulator; Provisional
Probab=97.07 E-value=0.0097 Score=74.49 Aligned_cols=145 Identities=12% Similarity=-0.000 Sum_probs=105.9
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---C------CHHHHHHHHHHHHHH
Q 000187 939 SLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---Q------HTELALKYVKRALYL 1006 (1888)
Q Consensus 939 ~~LA~ly~~lGd---yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~l---G------dyeeALey~~kALeL 1006 (1888)
+..|......+. .+.|+.++.+|+... .-+|+.+.+|..+|.|++.. | ...+|+++.++|+++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel 333 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI 333 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence 344444443333 356777788887332 23688899999999998766 1 234566666666664
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000187 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1007 ~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
+ +..+.++..+|.++...++++.|+.+|++|+.+. |+.+.+++..|.++...|+.++|.+++++
T Consensus 334 -----d---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 334 -----T---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred -----C---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 3445677889999999999999999999999874 66788899999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Q 000187 1087 TLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1087 ALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
|+++ .|..........|+
T Consensus 398 alrL-----sP~~~~~~~~~~~~ 415 (458)
T PRK11906 398 SLQL-----EPRRRKAVVIKECV 415 (458)
T ss_pred Hhcc-----CchhhHHHHHHHHH
Confidence 9854 45544444455566
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.014 Score=69.39 Aligned_cols=120 Identities=21% Similarity=0.138 Sum_probs=91.3
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLL 1007 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lG---dyeeALey~~kALeL~ 1007 (1888)
+|..+.-|..||.+|+.+|++..|+..|++|+.+. ++....+..+|.+++.+. ...+|...+++++.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 67788899999999999999999999999999983 334455666776666553 347888889998874
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000187 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~a 1070 (1888)
+|....+++.||..+...|+|.+|...++..|+.. .++.+....+-..++..
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIARA 274 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHH
Confidence 34556788889999999999999999999988764 34444444444333433
No 195
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.03 E-value=0.39 Score=63.95 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000187 933 MTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 933 e~A~ay~~LA~ly~-~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
.-+.++..||.+|+ ...+++.|..++.|++.++++ .+.. ..-..+..-|+.+|...+... |+.++.++++.++. +
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~-d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~ 132 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLT-DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-Y 132 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchH-HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-c
Confidence 44788999999888 889999999999999999877 2221 122455566789999888887 99999999998765 2
Q ss_pred CCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1012 GPSHPNTAATYINV-AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1012 G~dhP~~a~a~~NL-A~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+ |......+.-+ ...+...+++..|++.++......... |. ......+....|.++...+..+++++.++++...
T Consensus 133 ~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~d-~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 133 G--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-GD-PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred C--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-CC-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 2 33333333333 223333389999999999998887543 22 2233344445567777788888999999999776
Q ss_pred HHHh
Q 000187 1091 LRAK 1094 (1888)
Q Consensus 1091 ~kk~ 1094 (1888)
....
T Consensus 209 ~~~~ 212 (608)
T PF10345_consen 209 ARSL 212 (608)
T ss_pred Hhhc
Confidence 6643
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=97.03 E-value=0.0036 Score=68.87 Aligned_cols=102 Identities=11% Similarity=-0.033 Sum_probs=83.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
..+.....+..|.-++..|++++|..+|+-.+.+ ++.....+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 4566778889999999999999999999866553 23335567899999999999999999999998753
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.++|. ..+..|.+|..+|+.+.|+.+|+.++..
T Consensus 102 --~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 102 --KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred --cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 33343 2566899999999999999999998873
No 197
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.00 E-value=0.03 Score=58.20 Aligned_cols=122 Identities=23% Similarity=0.194 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHhcCC---CCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 933 MTAGAYSLLAVVLY--HTGDFNQATIYQQKALDINERELGL---DHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 933 e~A~ay~~LA~ly~--~lGdyeeAl~~~eKAL~I~Er~lG~---Dhp-~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+++.+|..|+..-. .-|-|++|..-+++|+++.+.+... ||. ..+.++..|+-.+..+|+|++++.-..+||..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 45667777765544 4588999999999999998655322 332 23577888999999999999999999999998
Q ss_pred HHHhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 1007 LHLTCGPSHPN----TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 1007 ~~ki~G~dhP~----~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
+... |.-|.+ ++.+-++.|..+..+|+.++|+..|+.+-++..+.-|.
T Consensus 85 FNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 85 FNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred Hhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 8765 443433 45666788999999999999999999999988766543
No 198
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.00 E-value=0.019 Score=72.98 Aligned_cols=242 Identities=14% Similarity=0.136 Sum_probs=159.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
++-+..|+..+-+..|.+|+....-.. -+.....++..+|.+|...|+.+.|...+++|+.+--. .-.+++..|
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~k--a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~----~v~dLa~vw 428 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKK--AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK----TVEDLAEVW 428 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCccc--CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc----chHHHHHHH
Confidence 445567889999999999987532111 12233467889999999999999999999999886321 123568899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH----HhcCCCChhH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 981 GDLAVFYYRLQHTELALKYVKRALYLLH----LTCGPSHPNT------AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~----ki~G~dhP~~------a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+.|.......+++.|++++++|..+=. ..+...+|-- ..++..++......|-++.....|++.+++.
T Consensus 429 ~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr- 507 (835)
T KOG2047|consen 429 CAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR- 507 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-
Confidence 9999999999999999999999986422 1233334432 3456666777778888888888888888874
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES-------KAFEQQEAA 1123 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q-------ka~e~AeAl 1123 (1888)
+.+..+..|.|..+....-|++|.+.|++.+.+|+ .+... -.|..|++. ...+.+.-+
T Consensus 508 -------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~v~--diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 508 -------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPNVY--DIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred -------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------CccHH--HHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 23445566778888888888999999998887763 12222 223333322 122333333
Q ss_pred HhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1124 RNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1124 ~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
.+.+...-+ ......+|...+.....-|--..|+..|++|.
T Consensus 573 FEqaL~~Cp------p~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 573 FEQALDGCP------PEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHhcCC------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322221111 11223355555666666687778888887764
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.93 E-value=0.091 Score=58.65 Aligned_cols=150 Identities=16% Similarity=0.111 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.-...||..+..+|++.+|..+|++++. |.- ......+..||...+..+++..|...+++..+.--. . ..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals------G~f-A~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~--r~ 159 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS------GIF-AHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-F--RS 159 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc------ccc-CCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-c--CC
Confidence 4567799999999999999999999986 321 233456778999999999999999998887764211 1 11
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000187 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
| ....-+|..|..+|++.+|...|+.++..+ ++ ..+.++ .+..+..+|+.++|...+....+-..
T Consensus 160 p---d~~Ll~aR~laa~g~~a~Aesafe~a~~~y-----pg--~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d~~~--- 224 (251)
T COG4700 160 P---DGHLLFARTLAAQGKYADAESAFEVAISYY-----PG--PQARIY--YAEMLAKQGRLREANAQYVAVVDTAK--- 224 (251)
T ss_pred C---CchHHHHHHHHhcCCchhHHHHHHHHHHhC-----CC--HHHHHH--HHHHHHHhcchhHHHHHHHHHHHHHH---
Confidence 2 223447999999999999999999999875 11 133444 48888999999998887654443332
Q ss_pred CCCCHHHHHHHHHHH
Q 000187 1096 GPDDLRTQDAAAWLE 1110 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La 1110 (1888)
...--.++....|+.
T Consensus 225 r~~~H~rkh~reW~~ 239 (251)
T COG4700 225 RSRPHYRKHHREWIK 239 (251)
T ss_pred hcchhHHHHHHHHHH
Confidence 222223355666664
No 200
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.92 E-value=0.019 Score=77.90 Aligned_cols=215 Identities=15% Similarity=0.018 Sum_probs=147.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+|.-+..|..+-.-+..+++.++|...+++||.-..-.-+...-+...+|.||=..| |.-+.-.+.|+||.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc--
Confidence 566566666666667788999999999999987541000122334566777776655 455667788888888652
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
...+|..|.-+|...+++++|.++|+..++-+. +....|..+|..+..+.+-++|...+++|+..
T Consensus 1529 -------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1529 -------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred -------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 346688899999999999999999998887653 34567777899999999999999999999977
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1091 LRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
+.+ .+|.....-...|. +..+..+..+++.++.... ++..-++|....+...+.|+.+.+...|++++
T Consensus 1594 lPk---~eHv~~IskfAqLE-Fk~GDaeRGRtlfEgll~a--------yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1594 LPK---QEHVEFISKFAQLE-FKYGDAERGRTLFEGLLSA--------YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred cch---hhhHHHHHHHHHHH-hhcCCchhhHHHHHHHHhh--------CccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 543 34544443333332 2223333444444443321 22344567777777788888888999999988
Q ss_pred HHhcccc
Q 000187 1171 KVKGNFY 1177 (1888)
Q Consensus 1171 eL~dSi~ 1177 (1888)
.+.-++.
T Consensus 1662 ~l~l~~k 1668 (1710)
T KOG1070|consen 1662 ELKLSIK 1668 (1710)
T ss_pred hcCCChh
Confidence 8766554
No 201
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.0082 Score=67.19 Aligned_cols=99 Identities=19% Similarity=0.068 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000187 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
--=|.-++..|+|++|..-|..||+++.... .-....+|.|.|.++..++.++.|+.-+-+|+++. +.+
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty 167 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTY 167 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chh
Confidence 3446778999999999999999999875431 13356778999999999999999999999999985 345
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
-.++...|.+|..+..|++|+.-|++.+++
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 567778899999999999999999887754
No 202
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.012 Score=66.00 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000187 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..|-.-|..++..|+|.+|..-|.+||.++.... ......+|.+.|.++..++.++.|+.-+.|||.+
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel----- 163 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL----- 163 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-----
Confidence 34567788889999999999999999999999865432 2445678999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.|....++..-|.+|..+..|++|++-|++.+++
T Consensus 164 ---~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 ---NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred ---CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4666778888999999999999999999999885
No 203
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.81 E-value=0.11 Score=68.96 Aligned_cols=190 Identities=14% Similarity=0.039 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+...--.|.+.+.+|+++.|+.+.+.++...-.. ....-+.++..+|.+...+|++++|..+.+++.++.++.- .
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~---~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~ 532 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEA---AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--V 532 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc---cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--c
Confidence 3333334788899999999999999999874321 2233467899999999999999999999999999987731 1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS---HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d---hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
......+.+.-+.++..+|+...|. ..++........... |.-...++..+.+.+.+ ++.+..-....+++.
T Consensus 533 ~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~ 607 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVG 607 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhh
Confidence 2234466677899999999433333 333333322222222 22234444444555444 677776666666665
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
... .+........++.||.++...|++++|...+.+....+..
T Consensus 608 ~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 608 SVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred hhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 333 2222223333468999999999999999999988877654
No 204
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.048 Score=64.14 Aligned_cols=173 Identities=14% Similarity=0.051 Sum_probs=114.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH----------HHHHH
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK----------ALDIN 965 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eK----------AL~I~ 965 (1888)
|-.+|..|+...+|..|-.+|++.-.+ +|.........|..++..+.+..|+..... ++++.
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLq 118 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQ 118 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444577788888888888888875443 566666666667777777777666643322 22211
Q ss_pred HHhc--CC------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000187 966 EREL--GL------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 966 Er~l--G~------------Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
-.+. .. -....+...+|.|.+.+..|+|+.|++-|+.|++. +.-.|..+ +|+|.+..+
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpllA---YniALaHy~ 190 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPLLA---YNLALAHYS 190 (459)
T ss_pred HHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh-----cCCCchhH---HHHHHHHHh
Confidence 1000 00 11245667889999999999999999999999985 44455543 679999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhc----------CCCc-----------HHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000187 1032 LGNVHVALRYLHKALKCNQRLL----------GPDH-----------IQTAASYHAIAIALSLMEAYPLSVQHE 1084 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~ek~~----------G~d~-----------~~tA~al~nLA~ay~~lGdydeAle~l 1084 (1888)
.|+|+.|+++.-+.++.-.+.. |.+- .....+++.-+.++++.|+++.|.+.+
T Consensus 191 ~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 191 SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 9999999999988876543321 1110 012344555677888889998886654
No 205
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.80 E-value=0.0062 Score=72.23 Aligned_cols=98 Identities=20% Similarity=0.146 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+-+.|..|+.+|+|++|+.+|.+++++ .|..+..+.+.|.+|+.+..|..|..-+..|+.+-.
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------ 162 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------ 162 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------
Confidence 445778899999999999999999999887 344456788999999999999999999999999843
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....+|..-|..-..+|...+|.+-++.+|++
T Consensus 163 --~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 163 --LYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 35789999999999999999999999999986
No 206
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.79 E-value=0.065 Score=55.86 Aligned_cols=120 Identities=23% Similarity=0.173 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---CCh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---dhp-e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
+...+..|...+..|-|++|..-+++|++....+... ||. ..+-|+..|+.++..+|+|++++.-..+||..+.|.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 4445556677788999999999999999987765322 222 347899999999999999999999999999998775
Q ss_pred cCCCChhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 969 LGLDHPDT----MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 969 lG~Dhp~t----a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
|.-|.+. +.+-++-|..+..+|+.++|+..|+.+-++.....|.
T Consensus 89 -GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 89 -GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp ---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred -cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 5555443 4556788999999999999999999999987765443
No 207
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.74 E-value=0.023 Score=64.49 Aligned_cols=170 Identities=14% Similarity=0.096 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.|..+++.|..|-..|-..-|..-|.++|.+ .|.++.+++.||..+...|+|+.|.+.|.-.+++
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------- 128 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------- 128 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-------
Confidence 4778899999999999999999999999987 6788899999999999999999999999888876
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH-------------HHHHHHHHHHHHC------
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA-------------ATYINVAMMEEGL------ 1032 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a-------------~a~~NLA~iy~~l------ 1032 (1888)
+|..-.+..|-|..++.-|+|..|.+-+.+-..- .+++|-.. .+..||..-+...
T Consensus 129 -Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG 202 (297)
T COG4785 129 -DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWG 202 (297)
T ss_pred -CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhh
Confidence 4555667788888889999999998765443221 12222111 1112222222211
Q ss_pred --------CCHHHHHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1033 --------GNVHVALRYLHKALKCNQRLLGPDHIQ----TAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1033 --------G~yeeAle~LekALei~ek~~G~d~~~----tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
|+..+ ...++++.+. ..+... ...+|+.||..|...|+.++|...|+-|+
T Consensus 203 ~~iV~~yLgkiS~-e~l~~~~~a~-----a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 203 WNIVEFYLGKISE-ETLMERLKAD-----ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHhhccH-HHHHHHHHhh-----ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11110 1112222221 122222 34678899999999999999999998665
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.72 E-value=0.02 Score=61.77 Aligned_cols=105 Identities=18% Similarity=0.131 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..++.-|...+..|+|.+|+..++....- -+-.+..-.+...|+.+|+..++|++|+..+++-+.+ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-----yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-----YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 467888899999999999999988765442 2334556688999999999999999999999999886 588
Q ss_pred ChhHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHH
Q 000187 1015 HPNTAATYINVAMMEEGLGN---------------VHVALRYLHKALKCN 1049 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~---------------yeeAle~LekALei~ 1049 (1888)
||.+-.+++..|+++..+.. ..+|...|++.+..+
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 99999999999999988765 666777666666554
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.71 E-value=0.059 Score=69.38 Aligned_cols=177 Identities=14% Similarity=-0.017 Sum_probs=116.1
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
--.|+-+.++.++.++.+ ...+.++.-......|+..-..+.. ..+.+.|...+...... .|+-...
T Consensus 199 GF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~lf 269 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSALF 269 (468)
T ss_pred CcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHHH
Confidence 356888999998888765 2222111111111222222222222 22334444444444332 5777788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
+..-|.++...|+.++|+++|++|+...... . .-....+..+|+++..+.+|++|..++.+.++.. ...
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-~---Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WS 338 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEW-K---QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWS 338 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhH-H---hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccH
Confidence 8899999999999999999999988532221 1 1124568899999999999999999998887643 234
Q ss_pred HHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHHHHHHhcCCCCH
Q 000187 1060 TAASYHAIAIALSLMEAY-------PLSVQHEQTTLQILRAKLGPDDL 1100 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdy-------deAle~lqkALeI~kk~LG~dh~ 1100 (1888)
.+...+..|.+|...|+. ++|..+++++-....+..|..-+
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 566677789999999999 77777887777777766664444
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.018 Score=68.53 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=92.1
Q ss_pred hhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC---HHHHHHHHHHH
Q 000187 885 QAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD---FNQATIYQQKA 961 (1888)
Q Consensus 885 ~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd---yeeAl~~~eKA 961 (1888)
+......+++.++-+|.+|+.+|++..|...|.+|+++ .++....+..+|.+++.+.+ -.+|..++++|
T Consensus 148 ~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 148 HLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 34445566888899999999999999999999999988 34445577788888877653 46778888888
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000187 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a 1021 (1888)
+.. ++....+.+.||..++..|+|.+|...++..+... ..+.|....+
T Consensus 220 l~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~i 267 (287)
T COG4235 220 LAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLI 267 (287)
T ss_pred Hhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHH
Confidence 875 45667889999999999999999999999988753 4455554433
No 211
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.69 E-value=0.046 Score=67.79 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhcC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT--AGAYSLLAVVLYHTGDFNQATIYQQKALD-INERELG 970 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~--A~ay~~LA~ly~~lGdyeeAl~~~eKAL~-I~Er~lG 970 (1888)
..++-.++.++..|++.+|.+++... .+....-|...|+. ...+++||.+++++|.|..+..+|.+|+. .+.++..
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34555677888899999988877543 22222222233443 34567999999999999999999999996 4444322
Q ss_pred CC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000187 971 LD---------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 971 ~D---------hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
.- ......+++|+|..|...|+.-.|.++|.+|...+.
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 11 112356789999999999999999999999998764
No 212
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.62 E-value=0.54 Score=62.68 Aligned_cols=274 Identities=14% Similarity=0.069 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---CC-----------h----hHHHHHHHHHHHHHhcCCHHHH
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH-----------R----MTAGAYSLLAVVLYHTGDFNQA 954 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---dh-----------p----e~A~ay~~LA~ly~~lGdyeeA 954 (1888)
+-.++-.|..++..|..+.|.+++.+++...+...+. .. . ....++..++.+...++++..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 3445555777888888889999999999988776510 00 0 1233456677888889999999
Q ss_pred HHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCChhHHHHHHHHHHHHH
Q 000187 955 TIYQQKALDINERELG-LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG---PSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 955 l~~~eKAL~I~Er~lG-~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G---~dhP~~a~a~~NLA~iy~ 1030 (1888)
......+.....+... .........++-.|.+++..|+.+.|+.+|.+.+-......+ ......+.+..|+..++.
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 9999988887665321 112334677888999999999999999999966544322222 223334566778888888
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000187 1031 GLGNVHVALRYLHKALKCNQRLLGP-DHIQTAASYHAIAIALSL--MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1031 ~lG~yeeAle~LekALei~ek~~G~-d~~~tA~al~nLA~ay~~--lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
..+.-.....-+.+.++..+..... ........+..+-.++.. .-.+.++..+++++++.+-+..+... .+..++.
T Consensus 461 ~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~-l~~~~L~ 539 (608)
T PF10345_consen 461 YESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ-LLAILLN 539 (608)
T ss_pred hhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch-HHHHHHH
Confidence 7766444322233334332222111 112222223222233322 23345899999999999822333322 2222333
Q ss_pred HHHHHH--HHHHHHHHHHHhcCCCCchhhhhcCCccHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1108 WLEYFE--SKAFEQQEAARNGTRKPDASIASKGHLSVSD-----LLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1108 ~La~L~--qka~e~AeAl~~~~~~~~~~~as~~~~svae-----lL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.+.... ....++++..... ...+.+....... .-..+...|...|+.++|.....+.-.+
T Consensus 540 lm~~~lf~~~~~e~~~~s~~a-----~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 540 LMGHRLFEGDVGEQAKKSARA-----FQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-----HHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 333221 1222222211110 0011111001111 2235666788999999999888776554
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.61 E-value=0.13 Score=64.79 Aligned_cols=128 Identities=20% Similarity=0.127 Sum_probs=100.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh------
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP------ 974 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp------ 974 (1888)
...++..+...-+++.++||++ .++.+.+|..||.-. ..-..+|..++++|++..+..+|.+..
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 4556778899999999999998 567778888777532 234689999999999999988776421
Q ss_pred --------h---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000187 975 --------D---TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 975 --------~---ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
+ ...+-..||.|..++|+.++|++.++..+... ..-+...+..||-.+|..++.|.++...+.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 0 13445689999999999999999999887642 112456789999999999999999988776
Q ss_pred H
Q 000187 1044 K 1044 (1888)
Q Consensus 1044 k 1044 (1888)
+
T Consensus 320 k 320 (539)
T PF04184_consen 320 K 320 (539)
T ss_pred H
Confidence 5
No 214
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.59 E-value=0.023 Score=65.80 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=81.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC-----CcHHHHHHH
Q 000187 990 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP-----DHIQTAASY 1064 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~-----d~~~tA~al 1064 (1888)
...+++|++.|.-|+..... .+..+...+.++..+||+|..+|+.+....++++|++.+++.+.. .....+.++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 45678888888888876544 456667889999999999999999999999999999988877532 233557788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1065 HAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+.+|.++.+.|++++|..++.+.+.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 8999999999999999999988774
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.58 E-value=0.01 Score=55.89 Aligned_cols=58 Identities=28% Similarity=0.385 Sum_probs=53.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
|..+|...+++++|+.++++++.+ +|.....+..+|.+|..+|++.+|+..|+++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467899999999999999999997 5667888999999999999999999999999975
No 216
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.58 E-value=0.2 Score=58.89 Aligned_cols=141 Identities=22% Similarity=0.223 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..+++-|....+.|++++|+.+|++...- -+-.+..-.+...|+..++..+++++|+.+..+-+.+ -+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l-----yP~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL-----YPT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCC
Confidence 456778888888999999999999876532 2334556788999999999999999999999998876 378
Q ss_pred ChhHHHHHHHHHHHHHHC-----CCHH---HHHHHHHHHHHHHHHhcCCCcHH--------------HHHHHHHHHHHHH
Q 000187 1015 HPNTAATYINVAMMEEGL-----GNVH---VALRYLHKALKCNQRLLGPDHIQ--------------TAASYHAIAIALS 1072 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~l-----G~ye---eAle~LekALei~ek~~G~d~~~--------------tA~al~nLA~ay~ 1072 (1888)
||+...+++..|.++... .+.. +|+.-|++.+. +. +++.. .+.--..+|..|.
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~---ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQ---RY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHH---HC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987743 2223 34444443333 22 44332 2233345677888
Q ss_pred HcCChHHHHHHHHHHHHH
Q 000187 1073 LMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1073 ~lGdydeAle~lqkALeI 1090 (1888)
+.|.+-.|+..+++.++-
T Consensus 179 kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 179 KRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HhcChHHHHHHHHHHHhc
Confidence 888888888887776644
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.56 E-value=0.0086 Score=56.34 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=53.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 983 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 983 LA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|+.+|...++|++|++++++++.+ +|.....+...|.+|..+|++++|+..|+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467899999999999999999986 46677788999999999999999999999999774
No 218
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.01 Score=68.09 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000187 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.+..+..+-+.|..++...+|..|+..|.+|+.+ +|..+..|.+-|.+|+++.+++.+..-.++|+++
T Consensus 6 ~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---- 73 (284)
T KOG4642|consen 6 MSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---- 73 (284)
T ss_pred cchHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc----
Confidence 3456778888999999999999999999999987 7888889999999999999999999999999997
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.++.+..++.||.+......|++|+..+++|..+.+..
T Consensus 74 ----~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 ----DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ----ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999999987663
No 219
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.52 E-value=0.024 Score=65.60 Aligned_cols=101 Identities=20% Similarity=0.135 Sum_probs=83.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhhHHH
Q 000187 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-----HPDTMKS 979 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D-----hp~ta~a 979 (1888)
....+++|++.|.-||-.++ +.+..+...|.++..+|++|..+|+.++...++++|+..+++.+-.. ..+....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 34568899999988887644 44667778899999999999999999999999999999988776332 2234577
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
++.+|.++.+.|++++|+++|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 888999999999999999999998863
No 220
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.19 Score=60.46 Aligned_cols=261 Identities=12% Similarity=0.008 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV-VLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~-ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+++|..+...|+..+-..+....-..+..+. .+..+...+.|-. +...-+....-+.++.++++++.+..
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--- 122 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--- 122 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh---
Confidence 4567888999999998887666666555554431 2333444444433 33344556677788888888876521
Q ss_pred Chhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 973 HPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~t-a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.... ...-..|..+|+..++|.+|+.+....+.-+++. .+.+....++..=...|..+.+..+|...+..|-.....
T Consensus 123 RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Ana 200 (411)
T KOG1463|consen 123 RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANA 200 (411)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcc
Confidence 1111 1334578899999999999999999888877765 334455556666677888888889998888877666544
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~ 1129 (1888)
.+-+.. ..+..=..-|.+++...||.-|..||-+|++-|.. +.++.....++.++. .+..+..+.-.++..+...
T Consensus 201 iYcpPq-lQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s--~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~ 277 (411)
T KOG1463|consen 201 IYCPPQ-LQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDS--LDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLA 277 (411)
T ss_pred cccCHH-HHHHHHHhccceeecccccchHHHHHHHHHccccc--cCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHH
Confidence 443321 12333334467777789999999999999988754 344556666665543 2233333333222221111
Q ss_pred CchhhhhcCCccHHHHHHHHHHHH--HHcCChHHHHHHHHHHHH
Q 000187 1130 PDASIASKGHLSVSDLLDYINPSH--DTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y--~~qGdyeEAleyyeKALe 1171 (1888)
.. ......+++..++.++ +...+|+.|+.-|+.-+.
T Consensus 278 l~------y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 278 LK------YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred Hh------ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 10 1112345677788877 445778888888877654
No 221
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.32 E-value=0.0093 Score=55.28 Aligned_cols=54 Identities=24% Similarity=0.346 Sum_probs=46.9
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000187 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
++..|++++|+.+|++++.. +|....++..||.+|..+|++++|..++++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999987 5666778999999999999999999999988775
No 222
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.16 E-value=0.014 Score=54.14 Aligned_cols=54 Identities=28% Similarity=0.339 Sum_probs=47.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 945 y~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+...|++++|+.+|++++.. +|....++..||.+|...|++++|..++.+++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999987 5677888899999999999999999999998864
No 223
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.15 E-value=0.018 Score=68.56 Aligned_cols=95 Identities=17% Similarity=0.125 Sum_probs=83.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000187 939 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 1018 (1888)
Q Consensus 939 ~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~ 1018 (1888)
-.-|.-|+.+|.|++|+.+|.+++.+ +|.....|.|-|..|+.+.+|..|..-+..|+.+-. ..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~--------~Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK--------LY 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------HH
Confidence 45688999999999999999999987 455667789999999999999999999999998743 35
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
..+|...|.+...+|...+|.+-++.+|++-
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 6788899999999999999999999999874
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.15 E-value=0.14 Score=65.93 Aligned_cols=133 Identities=19% Similarity=0.013 Sum_probs=98.7
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000187 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
...+.|.+++...+.. .|.-+-.+...|+++...|+.++|+..+++|+....... .-...++..+|++
T Consensus 247 ~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWC 314 (468)
T ss_pred CCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHH
Confidence 4455566666655544 455566788899999999999999999999985432211 1234678999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHhcCCCcH
Q 000187 987 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~y-------eeAle~LekALei~ek~~G~d~~ 1058 (1888)
+..+.+|++|..++.+.++.. .-..+...+..|.+|...++. ++|..+|.++-....+..|...|
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~s-------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKES-------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHchHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999999887631 223455566789999999999 78888888887777766664444
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.09 E-value=0.1 Score=58.21 Aligned_cols=133 Identities=15% Similarity=0.053 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.-+.+|..+...|++.+|..+|++++.- ... ..+..+..+|+..+..+++.+|...+++..+.-- ..
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG------~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p------a~ 157 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSG------IFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP------AF 157 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcc------ccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC------cc
Confidence 3455677888999999999999999863 222 2245778899999999999999998887766421 11
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+......+|..|..+|++.+|...|+.++..+ |. .......+.++..+|+.++|..-+....+..
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 233445668999999999999999999999863 11 2333447899999999999988776665544
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.1 Score=60.74 Aligned_cols=158 Identities=18% Similarity=0.197 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
....+-.+..++-.|.|.-....+.+.++. +.+.-......||++.++.||.+.|..++++.-....++.+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~- 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL- 248 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-
Confidence 445555667778888888888888877763 334445677889999999999999999999776655544332
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
........|.+.+|...++|..|...|.+.+.. ++..+.+.+|-|.|+.-+|+..+|++.++.++.+.
T Consensus 249 -q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--- 316 (366)
T KOG2796|consen 249 -QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--- 316 (366)
T ss_pred -chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 234566788999999999999999888887753 45566778899999999999999999999988764
Q ss_pred cCCCcHHHHHHHHHHHHHHH
Q 000187 1053 LGPDHIQTAASYHAIAIALS 1072 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~ 1072 (1888)
+.+...-...++|..+|.
T Consensus 317 --P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 317 --PRHYLHESVLFNLTTMYE 334 (366)
T ss_pred --CccchhhhHHHHHHHHHH
Confidence 333333344555555543
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.16 Score=60.87 Aligned_cols=167 Identities=14% Similarity=-0.020 Sum_probs=124.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+...+...+..|++.+|...+.+.|.- +|....++..--.+++.+|+.......++|.+..- ..|-|-
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~ 173 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPC 173 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcH
Confidence 333455667789999988888887764 55555566666678888999988888887776532 345555
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
.......+|..+...|-|++|.+...+|+++. +.-..+...++-++...|++.++.+++.+.-...+..
T Consensus 174 ~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--- 242 (491)
T KOG2610|consen 174 YSYVHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--- 242 (491)
T ss_pred HHHHHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh---
Confidence 56667778999999999999999999999873 3334556668999999999999999998877665421
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000187 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
....+..|-..|..|...+.|+.|++.|..
T Consensus 243 -~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 243 -WMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred -hHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 222334455678888888999999999874
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.97 E-value=0.64 Score=57.94 Aligned_cols=150 Identities=13% Similarity=0.030 Sum_probs=91.0
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 000187 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY 987 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly 987 (1888)
.+..|...+.++|...++.++...-.......+|=..|....+|+.-+.+.+..-.+ ...+-+........+|.++
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFAL 189 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHH
Confidence 444456667777777666654322333455667777789899998888777654332 1122334455667788888
Q ss_pred HH---cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhcCC
Q 000187 988 YR---LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 988 ~~---lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l---------G~yeeAle~LekALei~ek~~G~ 1055 (1888)
.+ .|+.++|+..+..++.- .......++.-+|.+|..+ ..+++|+.+|.++.++..
T Consensus 190 nRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~----- 257 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP----- 257 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-----
Confidence 88 89999999998887542 1223345566678887643 225566666666655531
Q ss_pred CcHHHHHHHHHHHHHHHHcCCh
Q 000187 1056 DHIQTAASYHAIAIALSLMEAY 1077 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdy 1077 (1888)
....-.|+|.++...|.-
T Consensus 258 ----~~Y~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 258 ----DYYSGINAATLLMLAGHD 275 (374)
T ss_pred ----cccchHHHHHHHHHcCCc
Confidence 122334556666666653
No 229
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.5 Score=55.68 Aligned_cols=172 Identities=16% Similarity=0.151 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+...|.+|+..|++++|+........+ .+...--.++.++.+++-|....++...+.+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------
Confidence 3444578889999999999887763332 23333345667777888888888887776432
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
.++..||..+...- .+-.-++.|..+++...+... .+..+++.+|.+...+|+|++|...++.||.-.
T Consensus 170 ---~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~~-~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd----- 237 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKTP-PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD----- 237 (299)
T ss_pred ---HHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcccC-CChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-----
Confidence 23344544443320 011114455555555544333 345678889999999999999999999999753
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000187 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 1105 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a 1105 (1888)
.....++.|+-.+-...|.-.++...+-.-+. ...+.|+-+...
T Consensus 238 ---~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk----~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 238 ---AKDPETLANLIVLALHLGKDAEVTERNLSQLK----LSHPEHPFVKHL 281 (299)
T ss_pred ---CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----hcCCcchHHHHH
Confidence 22355666777777778887777665543332 235666655433
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.84 E-value=0.14 Score=64.47 Aligned_cols=131 Identities=18% Similarity=0.133 Sum_probs=100.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---
Q 000187 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP--- 1016 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP--- 1016 (1888)
.+-.-.++..++..-+++.++||++. ++.+.+|.-||. .......+|+++|++|++..+..+|.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 34445567788899999999999984 667788887764 23345689999999999988877665310
Q ss_pred --------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Q 000187 1017 --------------NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ 1082 (1888)
Q Consensus 1017 --------------~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle 1082 (1888)
-...+...+|++..++|+.++|++.++..++... ......++.+|..+|..++.|.++..
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 0134567899999999999999999998887541 12356688999999999999999987
Q ss_pred HHHH
Q 000187 1083 HEQT 1086 (1888)
Q Consensus 1083 ~lqk 1086 (1888)
.+.+
T Consensus 317 lL~k 320 (539)
T PF04184_consen 317 LLAK 320 (539)
T ss_pred HHHH
Confidence 7654
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.77 E-value=0.21 Score=53.69 Aligned_cols=113 Identities=24% Similarity=0.226 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY--------------HRMTAGAYSLLAVVLYHTGDFNQATIYQQ 959 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~d--------------hpe~A~ay~~LA~ly~~lGdyeeAl~~~e 959 (1888)
..+...|......|+...++..+++++.++.--+-.+ +.....++..++..+...|++++|+.+++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3444556667788899999999999998764322111 12234567788889999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 960 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 960 KAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+++.+ +|..-.+|..|-.+|..+|++.+|+.+|++....+..-+|..
T Consensus 87 ~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 87 RALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99987 577778889999999999999999999999999888766654
No 232
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.77 E-value=0.19 Score=56.55 Aligned_cols=126 Identities=18% Similarity=0.111 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000187 957 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 957 ~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye 1036 (1888)
-++.-+.-++..++ ......++..+|.+|...|+++.|++.|.++++.+. ..-..+..+.++-.+....++|.
T Consensus 18 ~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 18 KLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHH
Confidence 34444444444333 345678899999999999999999999999887532 22346777888888999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1037 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1037 eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
....++.+|-.+.... .+..........-|..+...++|..|.+.|-.+...+
T Consensus 91 ~v~~~i~ka~~~~~~~--~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 91 HVEKYIEKAESLIEKG--GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999887652 2222223333345666777899999998887766443
No 233
>KOG3965 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.019 Score=61.25 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=48.3
Q ss_pred CCceEEEEEEEeCCceEEEEEeccceeecCCC--------------ccccchHHHHHhhhcHHHHHHHH
Q 000187 216 DDHLLSLDVKLCNGKMVNVEACRKGFYSVGKQ--------------RILCHNIVDLLGQLSRAFDNAYN 270 (1888)
Q Consensus 216 ~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~~--------------~~~~HsLv~LL~~iSp~F~~~f~ 270 (1888)
..||+||.|+|.|+-.|+|-=+.+||=|.+++ ...+-|+..||-.|||.|+..|-
T Consensus 60 ~~dliyiNV~T~E~~~yCleLT~kG~rIvS~~~d~~ngd~~~~~l~t~yyes~y~LLd~ISP~y~E~Fg 128 (160)
T KOG3965|consen 60 TSDLIYINVRTLEQVPYCLELTRKGWRIVSSRYDCMNGDFTEDDLHTKYYESAYQLLDDISPLYRERFG 128 (160)
T ss_pred CCCeEEEEeEeecCCceeeeecccceeeeccccchhcccchhhhhhhHHHhhHHHHHhhcChHHHHHHH
Confidence 57899999999999999999999999996531 23577999999999999999986
No 234
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.72 E-value=0.17 Score=59.07 Aligned_cols=218 Identities=11% Similarity=0.018 Sum_probs=134.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000187 949 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 1028 (1888)
Q Consensus 949 GdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i 1028 (1888)
.++++|+.-|++.+++- |..-..-..++-.+-.+++++++|++-+.+|.+.+...+...-.++.... .+++-..
T Consensus 41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKs--IN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKS--INSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHH--HHHHHHH
Confidence 47889999999999873 33334445788888999999999999999999999887765555544321 2222222
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000187 1029 EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108 (1888)
Q Consensus 1029 y~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~ 1108 (1888)
-....+.+.-..+|+..|+..+.. .+...+..+-..||.+|...|+|.+-...+++..+-++..-|+++..-..-+..
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 224455566667777777766554 222234445567899999999999998888888888888888877542211111
Q ss_pred ------HHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1109 ------LEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSD-LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1109 ------La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svae-lL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
--|..++....-++++..+..... ...|+.+.. +..-=|....+.|++++|-.-|-.|-+-.+..+
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKS---AIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG 265 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKS---AIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG 265 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhc---cCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC
Confidence 113333333334444443332221 112333322 222234445667788877776666666666655
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.68 Score=54.32 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+.+.++.++.-+|+|.-.+.++.+.+.. +.+.-......||.+-++.|+.+.|..|+++.-....++.+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~-- 248 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL-- 248 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc--
Confidence 46777888899999999999999988773 233344455678889999999999999999877665554332
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.....+..|.+.+|...++|..|...|.+.+.. ++..+.+.++-|.++...|+...|++.++.++++.
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 223456778899999999999999999887754 23456677888999999999999999998887653
No 236
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.69 E-value=3.8 Score=51.62 Aligned_cols=246 Identities=15% Similarity=0.098 Sum_probs=129.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
....|+.-..++++..|...|++||.. ++.. ...+...+.+-+.......|..++.+|+.+.-+
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdv-------d~r~-itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-------- 139 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDV-------DYRN-ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-------- 139 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhc-------cccc-chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch--------
Confidence 333345555566666666666666653 3332 245566667777777777777777777766433
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------HHHHHHhcCCCChhHHHHHHHHHHHH
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRA--------------------------LYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kA--------------------------LeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
.-..++..-.+...+|+..-|.+.|.+- ..+++.. ---||.+ ..+...|..-
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerf-V~~HP~v-~~wikyarFE 217 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERF-VLVHPKV-SNWIKYARFE 217 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHH-heecccH-HHHHHHHHHH
Confidence 2233333333333444444444333322 2222221 1237764 5677788888
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000187 1030 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1030 ~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
...|+..-|...|++|++.. |. .......+...|..-..++.++.|...|+-|+.-. ..+ ++.+....+
T Consensus 218 ~k~g~~~~aR~VyerAie~~----~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~----pk~--raeeL~k~~ 286 (677)
T KOG1915|consen 218 EKHGNVALARSVYERAIEFL----GD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI----PKG--RAEELYKKY 286 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHh----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc--cHHHHHHHH
Confidence 89999999999999999875 32 23344455555655566667777777666665432 111 222333333
Q ss_pred HHHHHHHHHHH---HHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1110 EYFESKAFEQQ---EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1110 a~L~qka~e~A---eAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
..+..+-++.. .++.......-......+....+.-+.+| .+....|+.+.-.+.|++|+.
T Consensus 287 ~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl-rL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 287 TAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL-RLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred HHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH-HHHHhcCCHHHHHHHHHHHHc
Confidence 34443333321 11111111111112222233333333333 334455888888888888775
No 237
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.68 E-value=0.095 Score=63.44 Aligned_cols=134 Identities=23% Similarity=0.175 Sum_probs=88.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000187 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDHPDT 976 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG--dyeeAl~~~eKAL~I~Er~lG~Dhp~t 976 (1888)
.-.+++..++++.|...++.+-+. .. +...+....|++....| .+.+|...|++... ..+.+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~-----~e---D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t 200 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQI-----DE---DSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGST 200 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC-----SC---CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--S
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc-----CC---cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCC
Confidence 457888999999998877665332 22 22223333445555566 57888887776422 23456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHhcCC
Q 000187 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~y-eeAle~LekALei~ek~~G~ 1055 (1888)
...++.+|.++..+|+|++|...+.+|+.. .|....++.|++.+...+|+. +.+.+++.+.... .+
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~-----~p 267 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS-----NP 267 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-----TT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-----CC
Confidence 788899999999999999999999998742 344566888999999999998 5566666654433 36
Q ss_pred CcHHHH
Q 000187 1056 DHIQTA 1061 (1888)
Q Consensus 1056 d~~~tA 1061 (1888)
+|+.+.
T Consensus 268 ~h~~~~ 273 (290)
T PF04733_consen 268 NHPLVK 273 (290)
T ss_dssp TSHHHH
T ss_pred CChHHH
Confidence 666543
No 238
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.026 Score=65.01 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=86.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000187 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
..-|..|+...+|..|+.+|.+|+.+ .|..+..|.|-|.+|.++.+|+.+..-..+|+++. ++.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~--------~N~ 77 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--------PNL 77 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--------hHH
Confidence 34466778888999999999999975 57788889999999999999999999999999874 677
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000187 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1061 A~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
+..++-||..+.....|++|+..+++|+.+++..
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999988764
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.60 E-value=3.3 Score=53.91 Aligned_cols=126 Identities=14% Similarity=0.059 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+.....+++++|..+..+..+++|.+||.+.-.. -++..+|+++.+|++-..+. ..
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~la--------~~ 847 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEVLA--------RT 847 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHHHH--------Hh
Confidence 3444567777777777777777777777654221 12333444444444322211 11
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH-------------------HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000187 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLH-------------------KALKCNQRLLGPDHIQTAASYHAIAIAL 1071 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Le-------------------kALei~ek~~G~d~~~tA~al~nLA~ay 1071 (1888)
+..+|+. +--+|.++...|--++|.+.|- +|+++.++. .-+++...+...|.-+
T Consensus 848 Lpe~s~l----lp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~---~l~qv~tliak~aaql 920 (1189)
T KOG2041|consen 848 LPEDSEL----LPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF---QLPQVQTLIAKQAAQL 920 (1189)
T ss_pred cCcccch----HHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHH
Confidence 2233332 2235555555555555555442 233333222 1233333333344455
Q ss_pred HHcCChHHHHHHHHHH
Q 000187 1072 SLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1072 ~~lGdydeAle~lqkA 1087 (1888)
...++.-+|++.+++|
T Consensus 921 l~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 921 LADANHMEAIEKDRKA 936 (1189)
T ss_pred HhhcchHHHHHHhhhc
Confidence 5667778888888776
No 240
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.59 E-value=0.052 Score=67.33 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHh
Q 000187 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT--MKSYGDLAVFYYRLQHTELALKYVKRALY-LLHLT 1010 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t--a~ay~nLA~ly~~lGdyeeALey~~kALe-L~~ki 1010 (1888)
.+.++..-+..+|..|+|..|..++...=.. +...|.-.|.. ...++|||.+++++|.|..+..+|.+|+. .+..+
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~-~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIH-KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhcccc-cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 3457778899999999999999877644222 22112223333 34568999999999999999999999995 44333
Q ss_pred -cCCC--------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 000187 1011 -CGPS--------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073 (1888)
Q Consensus 1011 -~G~d--------hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~ 1073 (1888)
-|-. ......+++|.|..|...|+.-.|.++|.+|...+.+. ..+|..||.++..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHH
Confidence 1200 11235678999999999999999999999999988542 3567777877653
No 241
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.58 E-value=1.2 Score=54.38 Aligned_cols=253 Identities=15% Similarity=0.100 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM-TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe-~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+..++..|+++++..+++++.......+...... ...+|..|..+ ..+.+.+++..+.......
T Consensus 30 ~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l-q~L~Elee~~~~~~~~~~~-------- 100 (352)
T PF02259_consen 30 EYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL-QQLVELEEIIELKSNLSQN-------- 100 (352)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hHHHHHHHHHHHHHhhccc--------
Confidence 3344455666789999999999999988755443332222 22333333322 2233344444433211100
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G--~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+...... +-..-.+...........+..+.+...++. ......+.++..++.+....|+++.|..++.++.....
T Consensus 101 -~~~~~~l--~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~ 177 (352)
T PF02259_consen 101 -PQDLKSL--LKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP 177 (352)
T ss_pred -HHHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC
Confidence 0000000 111111222222333344444444443333 11345678899999999999999999999988776431
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ-ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe-I~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~ 1129 (1888)
.. ......+.+..|.++...|+..+|+..+++.+. .+....+....... ..++.. .....
T Consensus 178 ~~----~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------~~~~~ 238 (352)
T PF02259_consen 178 SS----ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAEL--KSGLLE-------------SLEVI 238 (352)
T ss_pred cc----cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHH--hhcccc-------------ccccc
Confidence 11 111334556668999999999999999987776 33322221111100 001000 00000
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHhcccc
Q 000187 1130 PDASIASKGHLSVSDLLDYINPSHDTK------GRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y~~q------GdyeEAleyyeKALeL~dSi~ 1177 (1888)
.............+.++..+|...... +.+++++.+|.++.++.++.+
T Consensus 239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 000001111224456677777777666 888999999999999887655
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.47 E-value=0.29 Score=52.58 Aligned_cols=112 Identities=21% Similarity=0.136 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--C------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS--H------------PNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d--h------------P~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
+...|......++.+.++..+++++.++.--+-.+ . .....++..++..+...|++++|+.+++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445556677888889999999988875322111 1 112456677888889999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000187 1046 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1046 Lei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh 1099 (1888)
+.+. |..-.++..+-.+|...|+..+|+..|++....+.+.+|..-
T Consensus 89 l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 89 LALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 9873 445567888899999999999999999999999999888653
No 243
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.38 E-value=0.32 Score=54.85 Aligned_cols=128 Identities=13% Similarity=0.047 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Q 000187 913 VTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 992 (1888)
Q Consensus 913 ie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd 992 (1888)
++-++.-|..++.-.+ ...+..++..+|..|...|++++|++.|.++...+ ......+..+.++-.+....++
T Consensus 16 ~~~Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 16 LEKLEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCC
Confidence 3334444444444332 34667899999999999999999999999977653 2233467788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 993 yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+.....++.+|-.+... |.+..........-|..+...++|.+|-..|-.++.-+
T Consensus 89 ~~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999999998766 33322233334446777778899999999887776443
No 244
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=1.3 Score=52.45 Aligned_cols=145 Identities=16% Similarity=0.093 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
..+..-|.+|.+-|++++|+....+...+ .++..--.++.++.+++-|...+++...+...
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------ 169 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------ 169 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------
Confidence 34445578889999999998877663222 12222234566777888888888887765321
Q ss_pred hhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1016 PNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~----lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.++..||..|.. -+++.+|.-+|++--+ . .+.+..++..+|.++..+|+|++|...+++|+.-
T Consensus 170 ----~tLtQLA~awv~la~ggek~qdAfyifeE~s~-------k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k- 236 (299)
T KOG3081|consen 170 ----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-------K-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK- 236 (299)
T ss_pred ----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-------c-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 223334444432 2346666666654322 1 2335567788899999999999999999999843
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHH
Q 000187 1092 RAKLGPDDLRTQDAAAWLEYFESKA 1116 (1888)
Q Consensus 1092 kk~LG~dh~~tl~a~~~La~L~qka 1116 (1888)
...++.++..+..++....+.
T Consensus 237 ----d~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 237 ----DAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred ----cCCCHHHHHHHHHHHHHhCCC
Confidence 355666665555555544443
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.21 E-value=2.5 Score=50.85 Aligned_cols=80 Identities=21% Similarity=0.189 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHH-h-cCCCCh----hHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 000187 889 SSADGRQLLESSKTALDKG-KLEDAVTYGTKALAKLVA-V-CGPYHR----MTAGAYSLLAVVLYHTGDFNQATIYQQKA 961 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qG-d~dEAie~~eeAL~l~eq-i-~G~dhp----e~A~ay~~LA~ly~~lGdyeeAl~~~eKA 961 (1888)
....++.+|+.|...+..+ ++++|..++++|+++++. . ....++ ....++..|+.+|...+.++.... ..++
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~ 109 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNA 109 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHH
Confidence 3466899999999999999 999999999999999755 1 112233 346789999999999998764433 4455
Q ss_pred HHHHHHhc
Q 000187 962 LDINEREL 969 (1888)
Q Consensus 962 L~I~Er~l 969 (1888)
+...+.-+
T Consensus 110 l~~l~~e~ 117 (278)
T PF08631_consen 110 LRLLESEY 117 (278)
T ss_pred HHHHHHhC
Confidence 55555443
No 246
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.11 Score=62.31 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.|..+-+.|..|+...+|..|+..|.++|..- + .+....+.+|.|.|.+.+.+|+|-.|+.-+.+|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---c-~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------- 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---C-ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------- 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---C-CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 58889999999999999999999999998762 1 333455789999999999999999999999999886
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.|....+|+.-|.|++.+.++++|..+++..+.+.
T Consensus 149 -~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 -KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57778999999999999999999999999887664
No 247
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.05 E-value=3.6 Score=50.83 Aligned_cols=162 Identities=17% Similarity=-0.024 Sum_probs=94.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000187 900 SKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~-A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
++..+-.|+++.|..-|+-.+. +|++ ..-+..|=.--..+|+.+.|..|.+.|.... |....
T Consensus 127 AQaal~eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~W 189 (531)
T COG3898 127 AQAALLEGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPW 189 (531)
T ss_pred HHHHHhcCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCch
Confidence 5677788999999999987664 3442 1223333334457899999999999987763 33333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~--~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
+...+=...+..|+++.|+++......... .+++-.+ .+..+.--+..+. .-+...|.....+++++..
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~v--ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~p------ 260 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKV--IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAP------ 260 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHh--hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCC------
Confidence 333333445678999999999987766432 2332211 1222222222222 2245566666666666531
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
..+-.-..-|.+|+..|+..++-..++.+.+
T Consensus 261 --dlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 261 --DLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred --ccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 1222222336666777777777666665553
No 248
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.00 E-value=0.8 Score=52.03 Aligned_cols=100 Identities=14% Similarity=-0.033 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
.+...+|..+...+++++|+..++.++..- .+......+-.+||.+...+|++++|+..+...- ++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cc
Confidence 455678889999999999999999998632 2223345566789999999999999988776432 23
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
...+......|.++...|+-++|...|++|++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3455556677999999999999999999999763
No 249
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.24 Score=57.37 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---CChh-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YHRM-------TAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---dhpe-------~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
...+.+.|+-++.+|+|.+|...|++|+..++++.-. ..++ ....+.|++.++...|+|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456778899999999999999999999877665322 2222 23467899999999999999999988877
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.. ++....+|+.-|..+...-+.++|..-|.++|++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 64 6788999999999999999999999999999985
No 250
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.87 E-value=0.96 Score=53.07 Aligned_cols=206 Identities=10% Similarity=0.030 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..|-+.-.+++.+|+|++-.+.|.+.|..........+.+ .+.+.+-..-....+.+--..+|+-.+...+... +.
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK--Ne 141 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDYISTSKNMDLLQEFYETTLDALKDAK--NE 141 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh--cc
Confidence 3444555788899999999999999998766554444333 2222222211223333444456666555544421 22
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH----PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh----P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
......-..||.+|+..++|.+-.+.+++.-.-++.--|.++ .....+|.---.+|..+++-.+-..+|++||.+.
T Consensus 142 RLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiK 221 (440)
T KOG1464|consen 142 RLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIK 221 (440)
T ss_pred eeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhh
Confidence 223345567999999999999888887777666655555543 2345666666678888888888888999999886
Q ss_pred HHhcCCCcHHHH-HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000187 1050 QRLLGPDHIQTA-ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1050 ek~~G~d~~~tA-~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
..+ .||... .+.--=|..+.+.|+|++|..-|-+|..-+... ..++...++.+|
T Consensus 222 SAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs---GspRRttCLKYL 276 (440)
T KOG1464|consen 222 SAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES---GSPRRTTCLKYL 276 (440)
T ss_pred ccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc---CCcchhHHHHHH
Confidence 544 344333 233333566778899999988887776554432 334444444444
No 251
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.70 E-value=0.31 Score=49.11 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=65.0
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000187 1029 EEGLGNVHVALRYLHKALKCNQRLLGPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1029 y~~lG~yeeAle~LekALei~ek~~G~d-~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
..+.|+|..|++.+.+.++......... ......++.++|.++...|++++|+..+++|+++.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 3478999999999999999876653322 12456678889999999999999999999999999875 44445566677
Q ss_pred HHHHHHH
Q 000187 1108 WLEYFES 1114 (1888)
Q Consensus 1108 ~La~L~q 1114 (1888)
|+..+..
T Consensus 86 ~~~~l~~ 92 (94)
T PF12862_consen 86 WLANLLK 92 (94)
T ss_pred HHHHHhh
Confidence 7766543
No 252
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.58 E-value=4.4 Score=49.47 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHH
Q 000187 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD-INER 967 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~-I~Er 967 (1888)
....+..++..+..+...|+++.|..++.++..... ........+....+.+++..|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 334577888889999999999999999988766421 11122345677789999999999999999988877 3222
Q ss_pred hc-------------------------CCCChhhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 968 EL-------------------------GLDHPDTMKSYGDLAVFYYRL------QHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 968 ~l-------------------------G~Dhp~ta~ay~nLA~ly~~l------GdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
.. .......+.++..+|...... +.+++++.+|.+|+.+. |
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--------P 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--------h
Confidence 10 111234567888888888888 88899999999998863 4
Q ss_pred hHHHHHHHHHHHHHHC
Q 000187 1017 NTAATYINVAMMEEGL 1032 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~l 1032 (1888)
....+++.+|..+...
T Consensus 290 ~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKL 305 (352)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5556777777766543
No 253
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.51 E-value=1.9 Score=54.03 Aligned_cols=153 Identities=16% Similarity=0.050 Sum_probs=104.6
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------------------CChhhHHHHHHHHHHHH
Q 000187 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---------------------DHPDTMKSYGDLAVFYY 988 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~---------------------Dhp~ta~ay~nLA~ly~ 988 (1888)
.+|....++..++.++.++|++..|.++.++||-.+++.+.. ++.....++......+.
T Consensus 35 ~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 35 KNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH
Confidence 367777899999999999999999999999999998865321 12233455566677778
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 000187 989 RLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAI 1067 (1888)
Q Consensus 989 ~lGdyeeALey~~kALeL~~ki~G~d-hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nL 1067 (1888)
+.|-+..|+++.+-.+.+ .+. +|.- ++..|-....+.++|+--+++++.......+. .........+.+
T Consensus 115 ~RG~~rTAlE~~KlLlsL-----dp~~DP~g--~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~ 184 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSL-----DPDEDPLG--VLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSI 184 (360)
T ss_pred hcCcHHHHHHHHHHHHhc-----CCCCCcch--hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHH
Confidence 889999999888776664 333 4533 34445555667788877777776554421110 000112345566
Q ss_pred HHHHHHcCCh---------------HHHHHHHHHHHHHHH
Q 000187 1068 AIALSLMEAY---------------PLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1068 A~ay~~lGdy---------------deAle~lqkALeI~k 1092 (1888)
|.++...++- +.|...+++|+..+-
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 8888888887 889999999987653
No 254
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.50 E-value=0.45 Score=47.92 Aligned_cols=82 Identities=20% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000187 987 YYRLQHTELALKYVKRALYLLHLTCGPSH-PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 1065 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~dh-P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~ 1065 (1888)
..+.|+|..|++.+.+..+.........+ .....++.++|.++...|++++|+..+++|+++.++. .+....+.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 45789999999999999998766433221 1345678889999999999999999999999999887 34444555554
Q ss_pred HHHHH
Q 000187 1066 AIAIA 1070 (1888)
Q Consensus 1066 nLA~a 1070 (1888)
.++.+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44444
No 255
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.35 Score=56.11 Aligned_cols=105 Identities=15% Similarity=0.110 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---hh-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---PD-------TMKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh---p~-------ta~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
.+++.-|+-++.+|+|.+|...|+.|+...+.+.-... ++ ....|.|.+.|+...|+|-+++++....|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46777889999999999999999999998776543222 22 234678999999999999999998888776
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 1006 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1006 L~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
. ||....+|+..|.+....=+.++|.+-|.++|++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3 7888899999999999999999999999999886
No 256
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.19 E-value=5.8 Score=50.12 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=110.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000187 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
+...+.+.+.+.|+.+|.+. ...+-..+..+...|....++.+...|...+-.|+-.+-+ ..+...|..|
T Consensus 377 le~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK------~KlFk~YIel 446 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK------DKLFKGYIEL 446 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc------hhHHHHHHHH
Confidence 45678899999999999873 2334456888999999999999999999999888877533 2344555544
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000187 984 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 1063 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~a 1063 (1888)
...+++++.+..+|++-|+. .|....++...|.+-..+|+.+.|...|+-|+.--. .+.+.. +
T Consensus 447 ---ElqL~efDRcRkLYEkfle~--------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~----ldmpel--l 509 (677)
T KOG1915|consen 447 ---ELQLREFDRCRKLYEKFLEF--------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPA----LDMPEL--L 509 (677)
T ss_pred ---HHHHhhHHHHHHHHHHHHhc--------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc----cccHHH--H
Confidence 45667788888888887763 578889999999999999999999999998775321 111111 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1064 YHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1064 l~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+-..-..-...|.++.|..+|++-++
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 11111122345666666666665553
No 257
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=1.7 Score=51.53 Aligned_cols=226 Identities=11% Similarity=-0.012 Sum_probs=123.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 940 LLAVVLYHTGDFNQATIYQQKALDI----NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I----~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+|+-.....++++|+..|.+.+.- -+++. .+.-.+..+|+.+|...|++..--+......+.|.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~----nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk--- 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL----NEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK--- 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh----hHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc---
Confidence 3455555566777777766665543 11111 122356789999999999998877777777777766432
Q ss_pred hhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000187 1016 PNTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy-~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
|.+..+...|-..+ .....++.-+..+...++...+- .........-..++.+|++.|.|.+|+....-.+.-+++.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 33333332222222 23445666777776666654332 0111122333456778999999999999998888877765
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHh
Q 000187 1095 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH-DTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y-~~qGdyeEAleyyeKALeL~ 1173 (1888)
-+.-...+...+..-.+..-+.....++-.-.++.. +...-.++....-+..+.+++ +.-.+|.-|..||-.|++-.
T Consensus 159 DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~--Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 159 DDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL--ANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred cCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH--hhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 443333333333322333333333222211110000 001111122222344454444 66788999999998887755
Q ss_pred ccc
Q 000187 1174 GNF 1176 (1888)
Q Consensus 1174 dSi 1176 (1888)
..+
T Consensus 237 t~l 239 (421)
T COG5159 237 TLL 239 (421)
T ss_pred ccc
Confidence 443
No 258
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.13 E-value=7.4 Score=46.18 Aligned_cols=183 Identities=14% Similarity=0.081 Sum_probs=111.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHHHhcC--------------CHHH
Q 000187 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY---H-------RMTAGAYSLLAVVLYHTG--------------DFNQ 953 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~d---h-------pe~A~ay~~LA~ly~~lG--------------dyee 953 (1888)
...+.++..|+..+|+..++.=+..+..+.|.. . ...+.-|..+|.+..... -|..
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~~ 94 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQI 94 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHHH
Confidence 345788899999999999999999888876651 1 222334455555554432 1233
Q ss_pred HHHHHHHHHHHHHHhcC-CC-------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 954 ATIYQQKALDINERELG-LD-------------------HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 954 Al~~~eKAL~I~Er~lG-~D-------------------hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
|..+...--..++.... ++ .+.....+..+.............++++.+|+..+... +.
T Consensus 95 AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~-~~ 173 (247)
T PF11817_consen 95 AAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY-GQ 173 (247)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh-cc
Confidence 33333222222333210 01 00000111111111112234456788888998887763 22
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Q 000187 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHE 1084 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~l 1084 (1888)
.-....+...+|.-|...|+|++|+.+|+.+...+++- .-......++..+..++..+|+.+..+...
T Consensus 174 -~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 174 -NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred -chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34455667789999999999999999999997776543 233445677888899999999988776654
No 259
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.87 E-value=1.8 Score=51.85 Aligned_cols=144 Identities=19% Similarity=0.132 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 000187 894 RQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 894 ~~LlelG~~~l~----qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~I~ 965 (1888)
...+.++..|.. ..+..+|+.+|+.+... ..+.+.+.||.+|.. ..++.+|..+|++|...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~- 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL- 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Confidence 344444555443 23467788888754432 234577789999887 45899999999999875
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCC
Q 000187 966 ERELGLDHPDTMKSYGDLAVFYYRLQ-------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGN 1034 (1888)
Q Consensus 966 Er~lG~Dhp~ta~ay~nLA~ly~~lG-------dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~ 1034 (1888)
| ++.-..+..+||.+|..-. +...|+.+|.+|-.. .+ ..+..++|.+|.. ..+
T Consensus 143 ----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-------~~---~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 143 ----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-------GN---PDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred ----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-------cC---HHHHHHHHHHHHcCCCCCcC
Confidence 2 2221455778888887652 223577777766653 23 3567788988864 348
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000187 1035 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1035 yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
+.+|..||.+|-+.- + ....+.++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 999999999987652 2 45666777 555555
No 260
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.81 E-value=0.12 Score=42.79 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000187 937 AYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
+|.+||.+|..+|+|++|+.+|+++|.+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999987654
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=1.3 Score=53.08 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=97.3
Q ss_pred HHHHHHhhhhhhcccccCCCCCCh-------hHHHHhhhccchhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 848 RGLCHKVGIELVSRDFDMDSPSPF-------RKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKAL 920 (1888)
Q Consensus 848 ReLc~klGIqL~aR~Y~fdsa~~F-------~~eDIlnl~PvvK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL 920 (1888)
..+..++|||-..-.|-|....+. -++.|..+... + ... .....+..+...+..|++.+|...|..++
T Consensus 87 p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~--~-~~~--~~e~~~~~~~~~~~~e~~~~a~~~~~~al 161 (304)
T COG3118 87 PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDK--V-LPA--EEEEALAEAKELIEAEDFGEAAPLLKQAL 161 (304)
T ss_pred hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHH--h-cCh--HHHHHHHHhhhhhhccchhhHHHHHHHHH
Confidence 456688999887888877544321 11112221111 1 111 33445666788889999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH---------------HHHHHHHhcCC-----------CCh
Q 000187 921 AKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK---------------ALDINERELGL-----------DHP 974 (1888)
Q Consensus 921 ~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eK---------------AL~I~Er~lG~-----------Dhp 974 (1888)
... ++...+...||.+|...|+.+.|...+.. .+++.++.-.. .+|
T Consensus 162 ~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadP 233 (304)
T COG3118 162 QAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADP 233 (304)
T ss_pred HhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 873 34456788899999999999887766533 24444443222 245
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
+...+-+.||..|...|+++.|++++-..+.
T Consensus 234 dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 234 DDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667778999999999999999987765544
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.67 E-value=0.13 Score=42.58 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000187 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
+|.+||.+|..+|+|++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999977654
No 263
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.5 Score=57.03 Aligned_cols=107 Identities=19% Similarity=0.151 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000187 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
.++|.-|..-|.-|+.-.+|..|+..|.++|.. + -.|..-.+..|.|-|.+...+|+|..|+.-+.+|+.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--k--c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~----- 148 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--K--CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL----- 148 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--c--CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 357888888999999999999999999999875 2 2333445688999999999999999999999999875
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.|..+.+++.-|.++..+.++.+|..|+++.+.+..
T Consensus 149 ---~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 149 ---KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred ---CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 466678899999999999999999999999987753
No 264
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.55 E-value=2.4 Score=48.34 Aligned_cols=100 Identities=18% Similarity=0.036 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+...+|..+...+++++|+..++.++... .|......+-.+||.+...+|.+++|+..+...- ++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cc
Confidence 345678899999999999999999998652 2334445667789999999999999997665432 23
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
..........|.+|...|+-++|+..|++|+...
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3344445567999999999999999999999873
No 265
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.53 E-value=0.68 Score=55.80 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~-lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
+|..+.....+.+..+.|...|.+|+. +...+...|...|.+.+. .++.+.|...|++++..+ +..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~ 69 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCC
Confidence 455555666666678888888888862 123345778889999777 566666999999999864 223
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
++. +......+...++.+.|..+|++++... ........++......-...|+.+.....++++.+++
T Consensus 70 ~~~---~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 70 PDF---WLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHH---HHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHH---HHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 333 4444577789999999999999998653 1111133456666667777888888888877777654
No 266
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.48 E-value=5.5 Score=50.84 Aligned_cols=115 Identities=12% Similarity=-0.020 Sum_probs=76.1
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC--hhhHHHHHHHHHHHHHcCCH-------HHHHH
Q 000187 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH--PDTMKSYGDLAVFYYRLQHT-------ELALK 998 (1888)
Q Consensus 928 G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh--p~ta~ay~nLA~ly~~lGdy-------eeALe 998 (1888)
..+.++ ..++.||.+++.+|||+.|...|+-+..-+.. |. ...+.++-..|.++...+.. +....
T Consensus 203 ~~~S~E--~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~----Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~ 276 (414)
T PF12739_consen 203 SADSPE--AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN----DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEP 276 (414)
T ss_pred CCCChH--HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh----chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHH
Confidence 344455 56788999999999999999999988776532 22 12344555566666666643 47778
Q ss_pred HHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 999 YVKRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 999 y~~kALeL~~ki~G~---dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+++.|+..+...... .......+....+.++...+.+.+|...+-++...
T Consensus 277 ~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 277 YLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 888888887773221 12244556666777788888877777666555443
No 267
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.27 E-value=0.16 Score=40.91 Aligned_cols=30 Identities=40% Similarity=0.584 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 977 MKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+.+|+++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999987
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.26 E-value=3.8 Score=53.31 Aligned_cols=86 Identities=14% Similarity=-0.004 Sum_probs=50.9
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
|+...-.++.++|..+..+..+++|.+||.+.-.. -++..+|..+..|++-.. +.+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~--------la~ 846 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEV--------LAR 846 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHH--------HHH
Confidence 33445577888888888888888888888765432 123444555444443211 112
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000187 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
.+..++ ..+-.+|.++...|--++|++.|.
T Consensus 847 ~Lpe~s----~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 847 TLPEDS----ELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred hcCccc----chHHHHHHHHHhhchHHHHHHHHH
Confidence 222333 334456778888888888777654
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.24 E-value=0.16 Score=40.85 Aligned_cols=30 Identities=37% Similarity=0.613 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000187 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
+.+|+++|.+|..+|++++|+.+|++|+.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 468999999999999999999999999987
No 270
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.22 E-value=0.65 Score=52.18 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC----HHHHHHHHHHH
Q 000187 931 HRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH----TELALKYVKRA 1003 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdy---eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd----yeeALey~~kA 1003 (1888)
+|..+..+++-|.++..+.++ .++..+++.|+.-++..+.. +|....++++||.+|..++. ..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 455566777777777666544 44666666666665554433 47788899999999987754 35677777777
Q ss_pred HHHHHHh
Q 000187 1004 LYLLHLT 1010 (1888)
Q Consensus 1004 LeL~~ki 1010 (1888)
...+++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=0.64 Score=55.98 Aligned_cols=130 Identities=12% Similarity=0.018 Sum_probs=98.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
..++..|+...-...+++.+.. ...+-|....+...+|-.+...|-|++|....++|+++ ++.-..+.
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~----wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~ 212 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPK----WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWAS 212 (491)
T ss_pred hHHHhccchhhhhhHHHHhccc----cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHH
Confidence 3455678877777777666543 23344555566677888899999999999999999998 34456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000187 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 1046 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekAL 1046 (1888)
..+|.++...|++.++.+++++.-..|+.. .-....-|-..|.+|..-+.|+.|++.|.+-+
T Consensus 213 Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s----~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 213 HAKAHVLEMNGRHKEGKEFMYKTEDDWRQS----WMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHHHhcchhhhHHHHHHhcccchhhh----hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 789999999999999999999988877631 22233445667888999999999999998643
No 272
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=8 Score=52.52 Aligned_cols=183 Identities=16% Similarity=0.100 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----
Q 000187 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL----- 1009 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k----- 1009 (1888)
...|..||.+..+.|...+|++-|-|| |+| ..|...-....+.|.|++-.+|+..|..-.+.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 457999999999999999999888665 222 35666667777888888888888777654332
Q ss_pred ------------------hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000187 1010 ------------------TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071 (1888)
Q Consensus 1010 ------------------i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay 1071 (1888)
+.|+++.++ -.+|.-+...|.|+.|.-+|. ...-+..||..+
T Consensus 1171 eLi~AyAkt~rl~elE~fi~gpN~A~i----~~vGdrcf~~~~y~aAkl~y~----------------~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFIAGPNVANI----QQVGDRCFEEKMYEAAKLLYS----------------NVSNFAKLASTL 1230 (1666)
T ss_pred HHHHHHHHhchHHHHHHHhcCCCchhH----HHHhHHHhhhhhhHHHHHHHH----------------HhhhHHHHHHHH
Confidence 112222111 112333333333333332222 122345577778
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHH
Q 000187 1072 SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINP 1151 (1888)
Q Consensus 1072 ~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~ 1151 (1888)
..+|+|..|+...++|-.+. +. -.-..+....+.+..++..-. . ..--++-+..+-.
T Consensus 1231 V~LgeyQ~AVD~aRKAns~k----------tW-K~VcfaCvd~~EFrlAQiCGL--~----------iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKANSTK----------TW-KEVCFACVDKEEFRLAQICGL--N----------IIVHADELEELIE 1287 (1666)
T ss_pred HHHHHHHHHHHHhhhccchh----------HH-HHHHHHHhchhhhhHHHhcCc--e----------EEEehHhHHHHHH
Confidence 88888888888877764321 11 111222333333433332211 0 0011233556666
Q ss_pred HHHHcCChHHHHHHHHHHHHHh
Q 000187 1152 SHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1152 ~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.|..+|-+++-+..++.++-+-
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhhchh
Confidence 7788888888888888777653
No 273
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.57 E-value=3.8 Score=49.13 Aligned_cols=149 Identities=16% Similarity=0.061 Sum_probs=100.7
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l----GdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
...+++..|..++.++-.. ..+.....++.+|..- .+..+|+.+|+++.. .....+
T Consensus 52 ~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGLAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------cccHHH
Confidence 3556777777777776541 1115667777777654 457788888885433 233567
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-----C--HHHHHHHHHHHHHH
Q 000187 980 YGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-----N--VHVALRYLHKALKC 1048 (1888)
Q Consensus 980 y~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-----~--yeeAle~LekALei 1048 (1888)
.++||.+|.. ..++.+|..+|.+|... | ++.-..+..++|.+|..-. . ...|+.+|.+|...
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 7889999987 45899999999999874 2 3332455677888887642 2 22677777776654
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000187 1049 NQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1049 ~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALe 1089 (1888)
. ...+..+||.+|.. ..++.+|..+|++|.+
T Consensus 185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 2 34567778888764 3488999999998874
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.56 E-value=0.23 Score=39.61 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000187 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
+.+++.+|.+|+.+|++++|+.++++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4678999999999999999999999999873
No 275
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=92.38 E-value=8.2 Score=55.62 Aligned_cols=157 Identities=20% Similarity=0.080 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC----C----------------
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----D---------------- 950 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG----d---------------- 950 (1888)
..++..-.+|..++..|++.+|+..|.+|+..++.. .|+-+.|.|+-.++.+...++ +
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 346777778999999999999999999999998875 677788888777765443221 1
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhcC---CCChhh--HHHHHHHHHHHHH
Q 000187 951 ------------------------------------FNQATIYQQKALDINERELG---LDHPDT--MKSYGDLAVFYYR 989 (1888)
Q Consensus 951 ------------------------------------yeeAl~~~eKAL~I~Er~lG---~Dhp~t--a~ay~nLA~ly~~ 989 (1888)
...-...+.+++.+|.+... ...|.. ..+...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 11122356667776666531 112332 3556677777777
Q ss_pred cC--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 990 LQ--------------------HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 990 lG--------------------dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.. .-.++..++.+|+.+.... -...+.+.+|..+|.+|..+|-..++.-+++.++-.+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~--l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD--LSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh--CCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 7788888999998876432 2356678899999999999999999888888888776
Q ss_pred HH
Q 000187 1050 QR 1051 (1888)
Q Consensus 1050 ek 1051 (1888)
..
T Consensus 476 ~~ 477 (1185)
T PF08626_consen 476 VP 477 (1185)
T ss_pred cc
Confidence 43
No 276
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.05 E-value=11 Score=44.56 Aligned_cols=186 Identities=14% Similarity=0.128 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
.+..+|+.+.+.|+|++++.+..+++... ......=.+.|+.+|-. .|..-.+...+..... +..+..+
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~---~~~~~~~ 72 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ---KEENKGN 72 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh---hhcccch
Confidence 46678899999999999999999988761 11122334445555422 1222222222211111 1111111
Q ss_pred hhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHHHH-----CC-----CHHHHH
Q 000187 974 PDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGPS--HPN-TAATYINVAMMEEG-----LG-----NVHVAL 1039 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdy-eeALey~~kALeL~~ki~G~d--hP~-~a~a~~NLA~iy~~-----lG-----~yeeAl 1039 (1888)
... +..+-....+. ++=..++..++.+....+-+. .+. .+..+-..|..|.- .| -.+.|.
T Consensus 73 ~~~------~~~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~ 146 (236)
T PF00244_consen 73 EKQ------VKLIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKAL 146 (236)
T ss_dssp HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred hHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHH
Confidence 111 11111111111 222344455555554432221 122 12222223443331 11 136899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcC
Q 000187 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~-~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
..|++|+.+....+.+.+|.......|.+..|+ .+|+.++|++..++|++-....++
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 999999999999889999998888888887775 489999999999999988776554
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.03 E-value=10 Score=50.21 Aligned_cols=150 Identities=18% Similarity=0.148 Sum_probs=102.0
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000187 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----GDFNQATIYQQKALDINERELGLDHPDTMKSYGD 982 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l-----GdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~n 982 (1888)
....|..+++.+... ....+...+|.+|+.- .|.+.|+.+++.|..-+.+.. +.....+++.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 456677778777654 1234566677777654 689999999999987322110 1113346788
Q ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcC
Q 000187 983 LAVFYYRLQ-----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 983 LA~ly~~lG-----dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG---~yeeAle~LekALei~ek~~G 1054 (1888)
||.+|.... +++.|+.+|.+|-.+ .+| .+.+.+|.+|..-. ++..|..||..|...-
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----- 358 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----- 358 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----
Confidence 999998854 678899999888764 233 34566888887654 5678999998887541
Q ss_pred CCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 000187 1055 PDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALeI 1090 (1888)
...+++++|.+|.. .-+...|..++++|.+.
T Consensus 359 -----~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 359 -----HILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred -----ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 23466777877764 24778899999887753
No 278
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.95 E-value=0.3 Score=39.00 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1143 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1143 aelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
++++..+|.+|..+|++++|+.+|++++++..
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999865
No 279
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.72 E-value=0.37 Score=41.52 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 985 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ 985 (1888)
.++..||.+|..+|++++|+..|++++.. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46889999999999999999999999997 4555566666654
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.62 E-value=4.7 Score=53.36 Aligned_cols=120 Identities=21% Similarity=0.161 Sum_probs=86.2
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000187 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-----DFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-----dyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
..+.+.|+.+|+.|...+.... +.....+.+.||.+|.+.. ++..|+.+|.+|-.. ....+.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~ 328 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAA---TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQ 328 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHH---hhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHH
Confidence 3589999999999987321110 1112347888999998854 678899999888764 223567
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 000187 981 GDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 981 ~nLA~ly~~lG---dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei 1048 (1888)
+.||.+|.... ++..|.+||..|... .| ..+++++|.||.. ..+...|..||.+|.+.
T Consensus 329 ~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 329 YLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 88898888766 567899999888762 23 3556778888874 34788999999998775
No 281
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=91.56 E-value=0.15 Score=64.00 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..+-..|..++..+.|+.|+.+|.+|+++ ++..+..+.+-+.++...++|..|+.-+.+|+++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-------- 67 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL-------- 67 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------
Confidence 344555677888899999999999999987 7777888889999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.|..+.+|+.-|.+++.++++.+|+..|+....+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4888999999999999999999999888887664
No 282
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.27 E-value=0.39 Score=38.53 Aligned_cols=31 Identities=39% Similarity=0.573 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000187 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
+.+|..+|.+|..+|++++|+.++++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999985
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.18 E-value=0.42 Score=38.34 Aligned_cols=31 Identities=6% Similarity=-0.005 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000187 1144 DLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1144 elL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
+++..+|.+|..+|++++|+.+|++++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999999875
No 284
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.08 E-value=15 Score=49.75 Aligned_cols=119 Identities=22% Similarity=0.126 Sum_probs=82.1
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000187 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
++.++|.+|+....+.++. ||....+...-|..+.++|++++|..++ +++.. .+.++ -.++--|
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~----~~~~D---~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLL-EALYG----LKGTD---DLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhcc----CCCCc---hHHHHHH
Confidence 4567888888887777765 6766667777788999999999999443 44443 13332 3445567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 984 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
-.||..++++++|..+|++++.- .|. -..+..+=++|.+.+.|.+-.+ .|+++++
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk---aa~~LyK 138 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK---AALQLYK 138 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 88999999999999999999864 233 3444556667777777764333 4455554
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.05 E-value=0.21 Score=41.11 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Q 000187 958 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELAL 997 (1888)
Q Consensus 958 ~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeAL 997 (1888)
|++||++ +|+...+|++||.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6788887 6888999999999999999999996
No 286
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.85 E-value=24 Score=44.56 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=98.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH---TGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~---lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
..|.+..+|+.-+.+.+..-.+ ...+-.....+...+|.++.+ .|+.++|+..+.+++.-. .....
T Consensus 149 lSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-------~~~~~ 217 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-------ENPDP 217 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-------CCCCh
Confidence 4566667788767666543332 011112234456788888888 899999999888875532 23344
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 978 KSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 978 ~ay~nLA~ly~~l---------GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+|.-+|.+|..+ ...++|+.+|.++.++- ++ ...-.|++.++...|.-.+...-+++....
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~-~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~ 288 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PD-YYSGINAATLLMLAGHDFETSEELRKIGVK 288 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------cc-ccchHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 5667777776543 23566666666666542 21 233456777777777644444333333322
Q ss_pred HHHhcCCC----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1049 NQRLLGPD----HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1049 ~ek~~G~d----~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+....|.. ....--.+-.++.++...|++++|.+.+++++..
T Consensus 289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22222211 1111122334577778899999999999988854
No 287
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.81 E-value=6.5 Score=49.34 Aligned_cols=218 Identities=9% Similarity=0.010 Sum_probs=134.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000187 942 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a 1021 (1888)
.+....++...+|-.+..+--.......|.|-.......+.-|.++....++..|...+.+++--+.+ +.+-...+.+
T Consensus 238 ~wml~d~~~v~~~~~~~~~~h~al~~~~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sV 315 (482)
T KOG4322|consen 238 KWMLHDLLEVEENNLNTSYYHKALNSWFGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSV 315 (482)
T ss_pred HHHHHHhHHHHHhhhhhhHHHHHHHHhhcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHH
Confidence 33344444444444333222222233456676777788888999999999999999999988765443 3334556778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000187 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1022 ~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~ 1101 (1888)
+..++.++.+-+.--.++.++-.++..+.++ ......+..-..+|..+..+|-.+.|+..+..|+....-..|-++..
T Consensus 316 LL~~ae~~~~g~~a~l~lplaL~~~~~~sey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dra 393 (482)
T KOG4322|consen 316 LLTIAEARESGDTACLNLPLALMFEFKRSEY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRA 393 (482)
T ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHHHh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcc
Confidence 8888999888888778888887777776655 22223445556788888999999999999999998765544433221
Q ss_pred HHH---HHHHHH--------HHHH--HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHH---HHHH
Q 000187 1102 TQD---AAAWLE--------YFES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVS---TLKR 1165 (1888)
Q Consensus 1102 tl~---a~~~La--------~L~q--ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeE---Aley 1165 (1888)
... +...++ .+.. ...+.++.... .-..|..+.+++++++..|...|+..+ +...
T Consensus 394 ra~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~~~f~---------kL~~he~ildv~yf~A~~yn~lGd~~eRn~~Asl 464 (482)
T KOG4322|consen 394 RAIFVFANCTLAFALSCANESLDGFPRYLDLAQSIFY---------KLGCHEKILDVTYFSAYQYNHLGDSPERNLLASL 464 (482)
T ss_pred eeEEEEEeeeecchhhhhhhhHHhhHHHHHHHHHHHH---------HccchHHHHHHHHHHHHHHHhhcCchHHHHHHHH
Confidence 100 000000 0000 00111111111 123344688899999999999998765 4555
Q ss_pred HHHHHHH
Q 000187 1166 KTYVAKV 1172 (1888)
Q Consensus 1166 yeKALeL 1172 (1888)
|+|+...
T Consensus 465 Frk~~~~ 471 (482)
T KOG4322|consen 465 FRKAWRY 471 (482)
T ss_pred HHHHHHh
Confidence 5555543
No 288
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=6.3 Score=48.16 Aligned_cols=226 Identities=10% Similarity=-0.018 Sum_probs=124.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-Chhh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 942 AVVLYHTGDFNQATIYQQKALDINERELGLD-HPDT----MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D-hp~t----a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP 1016 (1888)
++......++++++..+...+...+ |.. +... -.+..+|+..|...|++++-..+.......+..+. .+
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~---~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---Ka 84 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQ---GASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KA 84 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhc---cccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hH
Confidence 3333444455666666665554311 111 1111 24667899999999999888777777777665532 12
Q ss_pred hHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000187 1017 NTAATYINVAMME-EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy-~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..+.+...|-.+. ..-+....-+.++.++++-..+- .........-..|..+|...++|.+|+......+.-+++.-
T Consensus 85 kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e--kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD 162 (411)
T KOG1463|consen 85 KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE--KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD 162 (411)
T ss_pred HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3333333333322 23334455566666665544322 01111223334678899999999999999988887777654
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhc
Q 000187 1096 GPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSH-DTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1096 G~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y-~~qGdyeEAleyyeKALeL~d 1174 (1888)
+....-....+.--.++.......+++....++... .+.-..+.+...+....+++ ..-.+|.-|..||-.|.+=++
T Consensus 163 DK~lLvev~llESK~y~~l~Nl~KakasLTsART~A--naiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 163 DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTA--NAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhh--cccccCHHHHHHHHHhccceeecccccchHHHHHHHHHcccc
Confidence 433322223333333444444444444332222111 11112223333445554444 556899999999999999888
Q ss_pred ccc
Q 000187 1175 NFY 1177 (1888)
Q Consensus 1175 Si~ 1177 (1888)
++.
T Consensus 241 s~~ 243 (411)
T KOG1463|consen 241 SLD 243 (411)
T ss_pred ccC
Confidence 877
No 289
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.59 E-value=0.27 Score=59.53 Aligned_cols=98 Identities=23% Similarity=0.145 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+....-.|..++..|.++.|++.|..|+.+ +|..+..|...|.++..++....|+.-|..|+.+
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei-------- 177 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI-------- 177 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------
Confidence 445555667788899999999999999876 6778888999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+++++..|-.-+.....+|++++|-.++..|..+
T Consensus 178 n~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 178 NPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred CcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 5677788888888999999999999999988875
No 290
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.40 E-value=13 Score=47.49 Aligned_cols=176 Identities=14% Similarity=-0.059 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHHH
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-------NQATIYQQKALDINER 967 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy-------eeAl~~~eKAL~I~Er 967 (1888)
.+..+|..++..|+|+-|...|+.+.+-+..- .-....|.++-..|.+++.++.. ++...+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 44556788889999999999999888765321 12234566777777777777744 3677788888888877
Q ss_pred hcC---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHCCCHHHHH
Q 000187 968 ELG---LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN---TAATYINVAMME--EGLGNVHVAL 1039 (1888)
Q Consensus 968 ~lG---~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~---~a~a~~NLA~iy--~~lG~yeeAl 1039 (1888)
... ........+....+.++...+.+.+|...+-++..... .+... .+..+-.+|.+| .....
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~----- 358 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNR----- 358 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCC-----
Confidence 321 11224556777788888899999888877776665421 01111 334444455555 11100
Q ss_pred HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000187 1040 RYLHKALKCNQRLLGPD-HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d-~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
...+.. ....+.-+..-|.-|...|+...|+.+|.+|+.++.
T Consensus 359 -----------~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 359 -----------PSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred -----------CCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000000 112333333446788899999999999999999886
No 291
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.30 E-value=0.25 Score=40.58 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHH
Q 000187 916 GTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT 955 (1888)
Q Consensus 916 ~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl 955 (1888)
|++|+++ +|..+.+|++||.+|...|++++|+
T Consensus 2 y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 6778776 6888899999999999999999986
No 292
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.13 E-value=0.61 Score=40.19 Aligned_cols=41 Identities=22% Similarity=0.172 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV 943 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ 943 (1888)
.++.+|..|...|++++|+..|+++++. +|+...++..||.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 4677899999999999999999999987 4555667777764
No 293
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=8.9 Score=48.19 Aligned_cols=183 Identities=15% Similarity=0.002 Sum_probs=126.2
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000187 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 928 G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
|.+-..-....+.-|.++....++.+|..++++++--+.+ +..-......+..++.++..-+..-.++.+.-+++..+
T Consensus 266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 3443444456666899999999999999999988776544 33334455677788888888888889999988888877
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHHcCChHHHHH
Q 000187 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI-----QTAASYHAIAIALSLMEAYPLSVQ 1082 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~-----~tA~al~nLA~ay~~lGdydeAle 1082 (1888)
... .-+ -..+.+-.++|..+..+|..+.|+..++.|+....-..|-+.. ..+.++..-+.-+ ...+++.+..
T Consensus 344 sey-~ld-yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~ 420 (482)
T KOG4322|consen 344 SEY-SLD-YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPR 420 (482)
T ss_pred HHh-ccc-hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHH
Confidence 653 222 2345556678999999999999999999999876443222211 1223332222222 5568889999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 000187 1083 HEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAF 1117 (1888)
Q Consensus 1083 ~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~ 1117 (1888)
++++|-+++.+. ..|....++...+++.+...+
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~yn~lG 453 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQYNHLG 453 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhhc
Confidence 999999999875 557777777766666654433
No 294
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=89.93 E-value=10 Score=54.80 Aligned_cols=229 Identities=14% Similarity=0.028 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC----------------------
Q 000187 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---------------------- 992 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd---------------------- 992 (1888)
++..-.+|.+|...|.+.+|+.+|..|+.+++. ..|+-..+.++-.++.+....+.
T Consensus 242 gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~--~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 242 GRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS--SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh--cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 455667899999999999999999999999877 45776666666665544322110
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHHhc---CCCChh--HHHHHHHHHHHHHHCC
Q 000187 993 ----------------------------------TELALKYVKRALYLLHLTC---GPSHPN--TAATYINVAMMEEGLG 1033 (1888)
Q Consensus 993 ----------------------------------yeeALey~~kALeL~~ki~---G~dhP~--~a~a~~NLA~iy~~lG 1033 (1888)
...=...+.+++.++.+.. ....|. ...+...++.++..+.
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 1111234556666555542 122333 2456666777777776
Q ss_pred --------------------CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1034 --------------------NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1034 --------------------~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.-.++..++.+|+.+....+ .......+|..+|.+|..+|-.+++.-++++++..+..
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~ 477 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVP 477 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcc
Confidence 67888999999988764432 34556789999999999999999998888888877654
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhc--CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1094 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASK--GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1094 ~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~--~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
.+...+......+..+... +...... ............ .......++..+-.+..+.||+.-+++|.-..|+
T Consensus 478 ~l~~~~~s~~~lL~~~~~~----Ygi~~~~--~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~ 551 (1185)
T PF08626_consen 478 GLIHWHQSYRSLLEELCKG----YGISLDP--ESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLR 551 (1185)
T ss_pred ccCCcchHHHHHHHHHhcc----CcccCCc--cccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3311121111111111000 0000000 000000000000 1112345666666677889999999988877666
Q ss_pred Hh
Q 000187 1172 VK 1173 (1888)
Q Consensus 1172 L~ 1173 (1888)
-.
T Consensus 552 ~~ 553 (1185)
T PF08626_consen 552 TY 553 (1185)
T ss_pred HH
Confidence 43
No 295
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.92 E-value=1.7 Score=48.95 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=49.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG----NVHVALRYLHKA 1045 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdy---eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG----~yeeAle~LekA 1045 (1888)
+|..+..+++-|..+..+.++ .++.++++.|+.-++..+.- +|....+++++|.+|..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 455677777777777766544 44666666666555443221 4777888999999998665 445677777777
Q ss_pred HHHHHHh
Q 000187 1046 LKCNQRL 1052 (1888)
Q Consensus 1046 Lei~ek~ 1052 (1888)
...+++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766544
No 296
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=18 Score=47.41 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
-..|++.|...+...+|..++++|...+..+.. +..+...+...++|+.+|..+.+.+.|.+++++|-+.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~-------- 423 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV-------- 423 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------
Confidence 456788888888999999999999998876432 2345566888999999999999999999999988664
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
++........+-......+.-++|+.+........
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 22233333334445556688888888877766554
No 297
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.90 E-value=16 Score=47.27 Aligned_cols=174 Identities=19% Similarity=0.162 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHhc
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY---QQKALDINEREL 969 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~---~eKAL~I~Er~l 969 (1888)
+..+.+.+..+...|+..+|-.+-.++..+++... .........+|+..-+++++..- +++...++.+.+
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I-------~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll 358 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAI-------EGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLL 358 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHH
Confidence 34455556677777877766666666666555432 11222233445555555555544 555555555555
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHH
Q 000187 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i-y~~lG~yeeAle~LekALei 1048 (1888)
+..+.+...+|+++=.+-.+..-.+.|...|.+|.+.- .+..|- +..-|.+ |...++..-|.+.|+-.|+.
T Consensus 359 ~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~---r~~hhV-----fVa~A~mEy~cskD~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 359 KIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK---RTRHHV-----FVAAALMEYYCSKDKETAFRIFELGLKK 430 (656)
T ss_pred hhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc---CCcchh-----hHHHHHHHHHhcCChhHHHHHHHHHHHh
Confidence 55555555666666666666677888888888887642 122232 2223333 66789999999999988876
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1049 ~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+ .+.+.....| ...+..+++-..|...|++++.
T Consensus 431 f-----~d~p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 431 F-----GDSPEYVLKY---LDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred c-----CCChHHHHHH---HHHHHHhCcchhHHHHHHHHHh
Confidence 5 4556665555 4566778888888888887764
No 298
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=88.80 E-value=0.62 Score=44.78 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=54.2
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEeccC
Q 000187 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEED 98 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVeep 98 (1888)
++|+|+++.+....+..-.+++|.||++.|..... +.-..+.|.+ +|..|+|...+++.. +++|.||.-|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~g-i~~~~q~L~~--~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLN-VPEEQQRLLF--KGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEEE--CCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 47999999876655533355999999999998654 5667788875 999999988777753 6999988644
No 299
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.66 E-value=20 Score=46.94 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH------HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 939 SLLAVVLYHTGDFNQATIYQQK------ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 939 ~~LA~ly~~lGdyeeAl~~~eK------AL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+|.++..+|.|.+|..+|.+ |++++.. .-+..++.-|...|.-++-..+.++-.+-...
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~--- 702 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARN--- 702 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh---
Confidence 3578888899999999998865 3444321 22345666666667666655555443332222
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHH------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000187 1013 PSHPNTAATYINVAMMEEGLGNVHVALRY------LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~------LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
-+.|.. .|.++...|+.++|+.. .+-++++.+++. ......+..+|..+..+..+.-|.+.|+
T Consensus 703 ~kePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 703 IKEPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred cCCcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 234544 37888889999988764 455666655541 1222344445555555555555544443
No 300
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=88.39 E-value=0.82 Score=47.19 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=57.2
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+..++|+|++..+....+..-++++|.+|++.|..... ..-..+.|.+ .|..|+|...|++.. +++|.|+-
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g-ip~~~QrLi~--~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEG-IPVAQQHLIW--NNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC-CChHHEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 45789999999887766555566999999999998654 6777788886 999999988887754 78998873
No 301
>PTZ00044 ubiquitin; Provisional
Probab=88.37 E-value=0.68 Score=44.51 Aligned_cols=68 Identities=10% Similarity=0.193 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|.|+++++....+..-.+++|.+|++.|..... ++-.+..|.+ +|..|+|...+++.. +++|.|+-
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~--~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEG-IDVKQIRLIY--SGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEEE--CCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 47899999887666544466999999999999775 6777888885 999999988888764 68888864
No 302
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.33 E-value=8.1 Score=48.46 Aligned_cols=114 Identities=17% Similarity=0.044 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh----c-CCCChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHH
Q 000187 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERE----L-GLDHPDTMKSYGDLAVFYYRLQHT---ELALKYVKRALYLLH 1008 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~----l-G~Dhp~ta~ay~nLA~ly~~lGdy---eeALey~~kALeL~~ 1008 (1888)
.|+.-|++.+....|++|+..+..|=+.+-.+ + +.|+ .+..-..+-+||+.+.+. ..|..-+.+|..-+.
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDN--yallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDN--YALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcc--hhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 34444555555555666665555554333221 0 1222 233344567888888764 567777777777776
Q ss_pred HhcCCCC-----------hhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 1009 LTCGPSH-----------PNT---AATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 1009 ki~G~dh-----------P~~---a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
..||.++ |.. ...+.--|.+.+.+|+-++|.++|+.|...+.++
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 6666553 333 3445667999999999999999999998877665
No 303
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=88.03 E-value=3.3 Score=50.05 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=82.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
+.....+..+.|..+|.+|+.. ......+|...|.+-++ .++.+.|...|+.++..+- .+....
T Consensus 9 ~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~-----~~~~~~-- 73 (280)
T PF05843_consen 9 RFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP-----SDPDFW-- 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT-----T-HHHH--
T ss_pred HHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CCHHHH--
Confidence 4445555688999999998631 22334577888988666 5666679999999998752 233443
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.....++...++.+.|..+|++++... .. ....-.+|......-...|+.+....+.+++.+.+
T Consensus 74 -~~Y~~~l~~~~d~~~aR~lfer~i~~l----~~-~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 74 -LEYLDFLIKLNDINNARALFERAISSL----PK-EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHHCCTS----SC-HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHhCcHHHHHHHHHHHHHhc----Cc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 344467788999999999999998641 11 11123445555566667788877777777766654
No 304
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=9.9 Score=46.02 Aligned_cols=131 Identities=18% Similarity=0.115 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HH
Q 000187 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR---------------AL 1004 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~k---------------AL 1004 (1888)
.-+.-....|++.+|...+..++... +....+...||.+|...|+.+.|...+.. .+
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556678899999999999999873 33466778899999999999888766543 23
Q ss_pred HHHHHhcCC-----------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 000187 1005 YLLHLTCGP-----------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073 (1888)
Q Consensus 1005 eL~~ki~G~-----------dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~ 1073 (1888)
++....-.. .+|+...+.+.+|..|...|++++|++.+-..++. ..|..... ..-.|-.++..
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~---d~~~~d~~---~Rk~lle~f~~ 284 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR---DRGFEDGE---ARKTLLELFEA 284 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---cccccCcH---HHHHHHHHHHh
Confidence 443332111 14555667788999999999999999987655544 22322222 23334455566
Q ss_pred cCChHHHHHHH
Q 000187 1074 MEAYPLSVQHE 1084 (1888)
Q Consensus 1074 lGdydeAle~l 1084 (1888)
.|.-+.+...|
T Consensus 285 ~g~~Dp~~~~~ 295 (304)
T COG3118 285 FGPADPLVLAY 295 (304)
T ss_pred cCCCCHHHHHH
Confidence 66444443333
No 305
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.82 E-value=85 Score=43.14 Aligned_cols=163 Identities=19% Similarity=0.151 Sum_probs=92.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000187 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
.|..++++|+.++|..++ +++... +.. .-..+..|-.+|..+|++++|..+|++++..+ |. -.
T Consensus 49 kaLsl~r~gk~~ea~~~L-e~~~~~----~~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-ee 111 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALKLL-EALYGL----KGT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS-EE 111 (932)
T ss_pred HHHHHHHhcCchhHHHHH-hhhccC----CCC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HH
Confidence 367788999999999544 444331 222 23567788899999999999999999998752 33 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHhcCCC
Q 000187 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR--YLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle--~LekALei~ek~~G~d 1056 (1888)
.++.+=.+|.+-+.|.+-.+ -|+++++. ++. .+.. .|.-+..+++.+...+++.. ++--|-+.+.+.+...
T Consensus 112 ll~~lFmayvR~~~yk~qQk---aa~~LyK~-~pk-~~yy--fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~ 184 (932)
T KOG2053|consen 112 LLYHLFMAYVREKSYKKQQK---AALQLYKN-FPK-RAYY--FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK 184 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CCc-ccch--HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC
Confidence 45555566667666654322 24444443 232 2322 24445666666655555444 1111222222222111
Q ss_pred -cHH-HHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000187 1057 -HIQ-TAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1057 -~~~-tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
... .+... ..-.++..+|++++|+..+..
T Consensus 185 gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~ 215 (932)
T KOG2053|consen 185 GKIESEAEII-LYLLILELQGKYQEALEFLAI 215 (932)
T ss_pred CccchHHHHH-HHHHHHHhcccHHHHHHHHHH
Confidence 111 22221 223466678999999888753
No 306
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.50 E-value=39 Score=44.55 Aligned_cols=106 Identities=8% Similarity=-0.013 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
..+.|-|.-+++..+|..|+++|+..+..... ...+...+....+++.+|..+.+.+.|.+++++|-+.-.+ .
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-----~ 427 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-----S 427 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-----c
Confidence 44567788889999999999999998875421 1223456788899999999999999999999999776322 2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
+ .+...+-.+....|.-.+|+........++..
T Consensus 428 ~---l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 428 P---LCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred H---HHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 2 22333455566678889999988877766544
No 307
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.43 E-value=0.77 Score=57.98 Aligned_cols=94 Identities=21% Similarity=0.203 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000187 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 1019 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a 1019 (1888)
.-|.-++.-++|+.|+.+|-|||++ +++.+..+.+-|..+...++|..|+.-+.+|+++ .|..+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~~ 72 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTYI 72 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchhh
Confidence 3455666778999999999999997 6788888899999999999999999999999985 47888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1020 ATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1020 ~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+|..-|.++..++++.+|+..|+....+.
T Consensus 73 K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 73 KAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred heeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 888888888888888888888888776654
No 308
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.28 E-value=2.7 Score=51.56 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHH
Q 000187 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 956 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~ 956 (1888)
...+..++..|+.++.+++|+.|...|.+|..++..+||..|.+...+++.+|..++.+++++.++-
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457789999999999999999999999999999999999999999999999999999988877654
No 309
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.09 E-value=25 Score=44.20 Aligned_cols=148 Identities=18% Similarity=0.075 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---------------------CChhHHHHHHHHHHHHHhcCCH
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------------------YHRMTAGAYSLLAVVLYHTGDF 951 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---------------------dhpe~A~ay~~LA~ly~~lGdy 951 (1888)
...|++++.++..+|+...|.+++++||-.++..+.. .+.....++......+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 5678899999999999999999999999876643211 2334455667777788888999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000187 952 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 952 eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
..|+++.+-.+.+ .+++ +-..+...+=.+..+.++|+--+++++..........-..-|. ..+.+|.++..
T Consensus 120 rTAlE~~KlLlsL-----dp~~-DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~aLA~~~ 190 (360)
T PF04910_consen 120 RTALEWCKLLLSL-----DPDE-DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIALAYFR 190 (360)
T ss_pred HHHHHHHHHHHhc-----CCCC-CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHHHHHHH
Confidence 9888888766665 2220 2334445555666677888777777665544211000001233 34557888888
Q ss_pred CCCH---------------HHHHHHHHHHHHHH
Q 000187 1032 LGNV---------------HVALRYLHKALKCN 1049 (1888)
Q Consensus 1032 lG~y---------------eeAle~LekALei~ 1049 (1888)
+++- +.|...+++|+..+
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 8887 88999999998765
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.02 E-value=7.6 Score=44.74 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=51.5
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000187 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
|....+++.....||.+|. ..+.++|+.+|.+++++... ++.-...++..||.+|..+|+++.|--|
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 4445567788888998877 77899999999999998643 3222345677799999999999988544
No 311
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=86.85 E-value=0.9 Score=43.15 Aligned_cols=66 Identities=8% Similarity=0.141 Sum_probs=52.7
Q ss_pred EEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc--c-CceeEEec
Q 000187 28 ITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLTE 96 (1888)
Q Consensus 28 itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lVe 96 (1888)
|.|+++.+..+.+..-+.++|.+|++.|.... .|.-+.+.|.+ +|..|+|...+++. + |++|+||.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gi~~~~q~Li~--~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQ-GVPPDQLRVIF--AGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHH-CCCHHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 57889988776664446699999999999865 47888888875 99999998777764 3 69999874
No 312
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=86.79 E-value=11 Score=42.59 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=94.0
Q ss_pred CChHHHHH-HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000187 907 GKLEDAVT-YGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-----TGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 907 Gd~dEAie-~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-----lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
|+|-++++ -|++|..++...+... ..+...+.+|..+.. .+++..|++++..|... ....+.
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC 108 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQAC 108 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHH
Confidence 55555543 4666666666655332 233455566654432 35688888888888762 345677
Q ss_pred HHHHHHHHHcC-----C--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----------------------
Q 000187 981 GDLAVFYYRLQ-----H--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG---------------------- 1031 (1888)
Q Consensus 981 ~nLA~ly~~lG-----d--yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~---------------------- 1031 (1888)
.++|+++..-. + ..+|++|+.+|-++- ...+..+|..+|..
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~ 178 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELG 178 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhh
Confidence 88888887542 2 578888888887641 12233344444432
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHh
Q 000187 1032 --LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----EAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1032 --lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l----GdydeAle~lqkALeI~kk~ 1094 (1888)
..+.+.|+++..+|.++ ++ ..+..|+.+.|..- .+-++|..+-.+|.+|.+..
T Consensus 179 ~~~kDMdka~qfa~kACel-------~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 179 SLSKDMDKALQFAIKACEL-------DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hhhHhHHHHHHHHHHHHhc-------CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554 22 23455667777542 46678888888888887654
No 313
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.44 E-value=7.2 Score=46.28 Aligned_cols=91 Identities=18% Similarity=0.026 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 000187 909 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988 (1888)
Q Consensus 909 ~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~ 988 (1888)
-...++++.+|+..+... ........+...||..|+..|++++|+.+++.+...+++- .-..-....+..|..|+.
T Consensus 154 s~~iI~lL~~A~~~f~~~--~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~ 229 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKY--GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAK 229 (247)
T ss_pred HHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHH
Confidence 345677888888877664 2345566777899999999999999999999998877652 223344577788999999
Q ss_pred HcCCHHHHHHHHHHH
Q 000187 989 RLQHTELALKYVKRA 1003 (1888)
Q Consensus 989 ~lGdyeeALey~~kA 1003 (1888)
..|+.+..+.+.-+.
T Consensus 230 ~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 230 RLGDVEDYLTTSLEL 244 (247)
T ss_pred HhCCHHHHHHHHHHH
Confidence 999998877765443
No 314
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.38 E-value=64 Score=44.61 Aligned_cols=165 Identities=16% Similarity=0.091 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------
Q 000187 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER------ 967 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er------ 967 (1888)
..+-.+|...++.|...+|++.|-+| ++| ..|...-.+..+.|.|++-+.|++.|-.-.+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~e 1171 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSE 1171 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHH
Confidence 34556678888999999999888765 233 35666667777788888877777665433211
Q ss_pred -----------------hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000187 968 -----------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 968 -----------------~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~ 1030 (1888)
+.|+++.+ ....|.-++..+.|+.|.-+|.. ..-+..||..+.
T Consensus 1172 Li~AyAkt~rl~elE~fi~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV 1231 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFIAGPNVAN----IQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLV 1231 (1666)
T ss_pred HHHHHHHhchHHHHHHHhcCCCchh----HHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHH
Confidence 11222211 12344455555555555433322 233455777788
Q ss_pred HCCCHHHHHHHHHHHHHH--HH---------------HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1031 GLGNVHVALRYLHKALKC--NQ---------------RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1031 ~lG~yeeAle~LekALei--~e---------------k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.+|+|+.|.+..++|-.. ++ ++.|-+-...+.-+-.|-..|...|-|++-+..++.++-+-
T Consensus 1232 ~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 888888888877766432 11 12233333344455566777778888877777776665443
No 315
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.28 E-value=4.5 Score=55.49 Aligned_cols=25 Identities=4% Similarity=0.006 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHH
Q 000187 1142 VSDLLDYINPSHDTKGRNVSTLKRK 1166 (1888)
Q Consensus 1142 vaelL~~Lg~~y~~qGdyeEAleyy 1166 (1888)
+...+...+.++..+|....|+.|+
T Consensus 664 l~~~~~~yanllasQG~~~~A~~~l 688 (1049)
T KOG0307|consen 664 LAKKFSEYANLLASQGALAAAMSFL 688 (1049)
T ss_pred HHHHHHHHHHHHHhcChHHHHHhhc
Confidence 4555666677778889998887776
No 316
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=86.23 E-value=7.8 Score=48.43 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=78.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhc--CC----CChhH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALAKLVAVC--GP----YHRMT----AGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~l~eqi~--G~----dhpe~----A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E 966 (1888)
+.-|..++.+++|..|..-|..||+++.+.. +. ...++ ..+...|..||..+++.+.|+....+.+.+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-- 257 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-- 257 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence 3344555666777777777777777655431 11 11122 223457899999999999999999999876
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 967 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 967 r~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
+|.+...+..-|.++..+.+|.+|-+-+.-|..++....|
T Consensus 258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~ 297 (569)
T PF15015_consen 258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGG 297 (569)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5666777778899999999999999988888888766433
No 317
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=44 Score=43.52 Aligned_cols=186 Identities=12% Similarity=0.100 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHh--------cCCHHHHHHHHHHHH
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLA-VVLYH--------TGDFNQATIYQQKAL 962 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA-~ly~~--------lGdyeeAl~~~eKAL 962 (1888)
..-.+|++|..+..+.+|.+|..++....+... .--..|..++ .+|.. .|+-+.|..+++.+.
T Consensus 302 ~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd--------WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~ 373 (546)
T KOG3783|consen 302 KSLMVFERAWLSVGQHQYSRAADSFDLLRDESD--------WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGE 373 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh--------hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHH
Confidence 356788889999989999999888877665521 1111233333 33322 345555555554443
Q ss_pred HHHHHhcCCCCh--------------------hhH--HHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhH
Q 000187 963 DINERELGLDHP--------------------DTM--KSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNT 1018 (1888)
Q Consensus 963 ~I~Er~lG~Dhp--------------------~ta--~ay~nLA~ly~~lGdy--eeALey~~kALeL~~ki~G~dhP~~ 1018 (1888)
.+... -|.+-| ... .-|+.++.++..-.+. ++.+ ++..-+..---.+..+.
T Consensus 374 ~l~~~-a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~ 448 (546)
T KOG3783|consen 374 ELLAN-AGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDE 448 (546)
T ss_pred HHHHh-ccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHH
Confidence 33222 111111 011 1234454444333222 2222 22222211111122334
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q 000187 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA-YPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGd-ydeAle~lqkALeI~ 1091 (1888)
..-+.-+|.++..+|+-..|..+|..+++-. .....+......+++.||.+|..+|. ..+|..++.+|.+.+
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e-~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKE-SKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 5556778999999999999999999988663 22235566678899999999999998 999999999987653
No 318
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=86.15 E-value=58 Score=40.33 Aligned_cols=125 Identities=14% Similarity=0.066 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000187 953 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 953 eAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
..+.+|++||.. .+++......|..+| ....+.++..+-+++++.. .++.+.+...|.+.-..-...
T Consensus 49 ~klsilerAL~~-----np~~~~L~l~~l~~~---~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~~~ 115 (321)
T PF08424_consen 49 RKLSILERALKH-----NPDSERLLLGYLEEG---EKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNFAS 115 (321)
T ss_pred HHHHHHHHHHHh-----CCCCHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHhcc
Confidence 344455555554 234445555555544 3445666666666666653 233444544454443333445
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCC----------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1033 GNVHVALRYLHKALKCNQRLLGPD----------HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1033 G~yeeAle~LekALei~ek~~G~d----------~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
-.+...+..|.++|+......... ......++.+++..+...|..+.|+..++-.+++
T Consensus 116 f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 116 FTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred CcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 568899999999998876654322 2345677778888888999999999999877765
No 319
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.10 E-value=23 Score=44.20 Aligned_cols=159 Identities=18% Similarity=0.057 Sum_probs=104.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT--AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~--A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
...+..|+++.|+++........ +.+.+-.+. +..+..-++.. .--+...|.....+++++ .++..-
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL--------~pdlvP 264 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKL--------APDLVP 264 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhc--------CCccch
Confidence 34567899999999998877653 222222222 22222222222 234577888888888776 356666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000187 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
+-.--|..|+..|+..++-..++.+.+. .-||+++.+ |....--+.++.-++++-++.. -.+
T Consensus 265 aav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~l-------Y~~ar~gdta~dRlkRa~~L~s-----lk~ 326 (531)
T COG3898 265 AAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALL-------YVRARSGDTALDRLKRAKKLES-----LKP 326 (531)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHH-------HHHhcCCCcHHHHHHHHHHHHh-----cCc
Confidence 6677788999999999999998887663 568986544 3333334566777777766542 234
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
+.+.....+++.-..-|+|..|....+.+.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 556677778888888899988876555444
No 320
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.93 E-value=5.5 Score=39.30 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.++...+.|.-++.+.+..+|+..+.++|.... +.++...++..|..+|...|+|.+++.+..+=+.+++..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~-----~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKIT-----DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 366777888888899999999999999998742 345667888999999999999999999999888888764
No 321
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=85.92 E-value=1.1 Score=43.19 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=52.9
Q ss_pred EEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc--c-CceeEEec
Q 000187 28 ITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLTE 96 (1888)
Q Consensus 28 itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lVe 96 (1888)
|+|+++.+....+..-++++|.+|++.|.... .++...+.|.| +|..|+|-..+++. + +++|.|+-
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~-gi~~~~q~L~~--~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRE-RVQADQFWLSF--EGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHh-CCCHHHeEEEE--CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 67999998877666656799999999998865 47888899986 99999997766664 2 57887764
No 322
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=85.56 E-value=1.4 Score=42.11 Aligned_cols=65 Identities=20% Similarity=0.270 Sum_probs=51.4
Q ss_pred EEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000187 26 LDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
++|+|+++.... ...+ ++++|.+|++.|..... ++...+.|-+ .|..|+|...|++.. |++|.||
T Consensus 1 ~~i~vk~~~g~~--~l~v~~~~TV~~lK~~I~~~~~-i~~~~~~Li~--~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDKE--EIEIAEDASVKDFKEAVSKKFK-ANQEQLVLIF--AGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcCCCCE--EEEECCCChHHHHHHHHHHHhC-CCHHHEEEEE--CCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 469999997753 3344 55999999999998775 7888888876 999999987776643 6999887
No 323
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.47 E-value=20 Score=44.89 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=99.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi-~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
..++.+.++.+|...-...+.-.... .-..+-..+.+|+.+..+|...|+...-...+..-+... .++.|....+..
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavL 211 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVL 211 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHH
Confidence 44556778888888777766532110 001123457889999999999999776666666555543 345565556666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+.|=..|...+.|+.|..+..++..-- .....+.+..++.+|.+..-+++|..|.+++.+|+...
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 6677788888888999887766654210 11233678888899999999999999999999998764
No 324
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.46 E-value=41 Score=44.21 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=41.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000187 1028 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1028 iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
+....++|.+|....++-=+ ..-..|+..|+-+....+|++|.+.|.+|- ++.++..
T Consensus 782 lHve~~~W~eAFalAe~hPe-----------~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG------------r~~EA~~ 838 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEKHPE-----------FKDDVYMPYAQWLAENDRFEEAQKAFHKAG------------RQREAVQ 838 (1081)
T ss_pred heeecccchHhHhhhhhCcc-----------ccccccchHHHHhhhhhhHHHHHHHHHHhc------------chHHHHH
Confidence 34456777776654432211 123456777888899999999988887664 2344555
Q ss_pred HHHHHHHHHH
Q 000187 1108 WLEYFESKAF 1117 (1888)
Q Consensus 1108 ~La~L~qka~ 1117 (1888)
.|.+++..+.
T Consensus 839 vLeQLtnnav 848 (1081)
T KOG1538|consen 839 VLEQLTNNAV 848 (1081)
T ss_pred HHHHhhhhhh
Confidence 5555555443
No 325
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.32 E-value=28 Score=43.76 Aligned_cols=143 Identities=13% Similarity=0.085 Sum_probs=91.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000187 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPD--HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ 1103 (1888)
Q Consensus 1026 A~iy~~lG~yeeAle~LekALei~ek~~G~d--~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl 1103 (1888)
...+..++++.+|..+-+..+.-.. ..... ....+.+|+.+..+|...|+...-...+..-+.. +.|+.+.....
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt--AtLrhd~e~qa 209 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRT--ATLRHDEEGQA 209 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH--hhhcCcchhHH
Confidence 3344556788888877766554321 11111 2346788889999999999876555555443433 34555544444
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000187 1104 DAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1104 ~a~~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
....||. ++..+.++++..+......++.. ....++..++++|.+..-+++|..|.+|+-+|+.....
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~----snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAA----SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCcccc----ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 4444544 55556666666655444444322 22378899999999999999999999999999886653
No 326
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.13 E-value=23 Score=44.82 Aligned_cols=144 Identities=17% Similarity=0.066 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL--AVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~L--A~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
..+...+..+..++..++|..|...+...+.. +-+. .. ...+..| |..+|...++.+|..++++.+......
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~--~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l 202 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRR---LPGR--EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL 202 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCch--hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh
Confidence 34566777888999999999999999998764 2111 11 3445555 455678899999999999877642110
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
......+..+..+ -+++..+.............-....+..+...|.--...|+|+.|+..+-+++++
T Consensus 203 -----~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 203 -----NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred -----HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0001111111111 1222222222221111000001223333334455555789999999999999988
Q ss_pred HHHh
Q 000187 1049 NQRL 1052 (1888)
Q Consensus 1049 ~ek~ 1052 (1888)
+.+.
T Consensus 271 ~~Q~ 274 (379)
T PF09670_consen 271 LAQH 274 (379)
T ss_pred HHHH
Confidence 6543
No 327
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=84.68 E-value=7.4 Score=38.44 Aligned_cols=68 Identities=16% Similarity=0.028 Sum_probs=53.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000187 1023 INVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1023 ~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..-|.-+....+.++|+..++++|+.. .+.+....++-.|.++|...|+|++++.+.-.-+.+..+.-
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334555667788899999999999875 34456777888899999999999999999888777776543
No 328
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=84.18 E-value=5.9 Score=41.49 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=64.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000187 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l----GdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
+|..++..|++-+|+++.+..+.... .+ ...+..+..-|.+++.+ .+.+-=..|+.-+++-+.+..+. +|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~----~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHG----ED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHcc----CC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 46778899999999999999887632 22 22224455556666554 34444445666666655554322 46
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
..+..++.||.-+-....|+++....+++|.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66777777777666666666666666666653
No 329
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=84.10 E-value=0.57 Score=33.40 Aligned_cols=13 Identities=46% Similarity=0.876 Sum_probs=10.4
Q ss_pred CCCCCCCCccCCC
Q 000187 1690 NGNSNVPEFIPGP 1702 (1888)
Q Consensus 1690 ~~~~~~~~f~p~~ 1702 (1888)
.+||+|.||||+-
T Consensus 5 ~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 5 KLNPNAPEFVPSS 17 (18)
T ss_dssp SSSTTSSSS-TTT
T ss_pred ccCCCCccccCCC
Confidence 4899999999973
No 330
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.06 E-value=50 Score=40.87 Aligned_cols=128 Identities=13% Similarity=0.042 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 000187 909 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 988 (1888)
Q Consensus 909 ~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~ 988 (1888)
.+..+.+|++||+. .+++..+...| -.++....+.++.....++++.. ...++.....|.+.-...+
T Consensus 47 ~E~klsilerAL~~-----np~~~~L~l~~---l~~~~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH-----NPDSERLLLGY---LEEGEKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHH---HHHHHHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHh
Confidence 34456677777765 23344433333 33444556777777777777765 2345566677776666666
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 989 RLQHTELALKYVKRALYLLHLTCGPS----------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 989 ~lGdyeeALey~~kALeL~~ki~G~d----------hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
..-.+......|.+++..+....... ...++.++.+++..+...|..+.|+..++..+++.
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 67788999999999998876654332 22356778888999999999999999999999885
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.67 E-value=1.6e+02 Score=44.60 Aligned_cols=112 Identities=22% Similarity=0.080 Sum_probs=82.2
Q ss_pred ccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000187 888 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
.....++.+++.|++....|+++.|..++-.|.+.. .+.++...|..++.+|+-..|+.++++.+..+.-
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 344568899999999999999999999998887651 3468888999999999999999999999976532
Q ss_pred hc-CC--------CChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHH
Q 000187 968 EL-GL--------DHPDTMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHL 1009 (1888)
Q Consensus 968 ~l-G~--------Dhp~ta~ay~nLA~ly~~lGdy--eeALey~~kALeL~~k 1009 (1888)
-+ ++ +......+...++.+....+++ +.-+++|..|.++..+
T Consensus 1735 ~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1735 DLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred cccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 21 11 1111123455666666667775 4567888888887543
No 332
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.65 E-value=19 Score=45.19 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHh
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN---QRL 1052 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~---ek~ 1052 (1888)
+-.++..||..|...|+++.|+++|-++...+.. .-.++..+.|+-.+-..+|+|..-..+-.+|..-. ...
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 4578899999999999999999999999988754 24567778888888888999988888887776652 110
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000187 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
...-+..+.++. |.+...+++|..|..++-.+
T Consensus 224 -~q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 224 -AQEVPAKLKCAA--GLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred -HHhcCcchHHHH--HHHHHHHHHHHHHHHHHHhC
Confidence 011112234443 45555666888888877543
No 333
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=83.64 E-value=1.7 Score=42.60 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=54.1
Q ss_pred EEEEEEcCCCCceEEE-cc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 26 LDITVNLPDDTRVILK-GI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~-~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|+++.+..+... .+ ++++|.+|++.|.+.. .+.-....|.| +|..|+|...|++.. |++|.|+-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~-gi~~~~QrLi~--~Gk~L~D~~tL~~y~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELF-NVEPECQRLFY--RGKQMEDGHTLFDYNVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHh-CCCHHHeEEEe--CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 4799999988875333 45 5699999999999865 48888888986 999999988777753 68888764
No 334
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=83.58 E-value=2.3 Score=41.69 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=53.2
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|+++.+....+..-++++|.||++.+.... .+....+.|.+.++|..|+|-..+++.. |++|.|+-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~-~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~ 75 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKI-GVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVV 75 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHh-CCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEE
Confidence 7899999987665543335599999999999876 4777888884435899999976666643 68888874
No 335
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=83.56 E-value=1.8 Score=41.30 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|+++++..+.+..-.+++|.+|++.|.... .+.-....|.+ +|..|+|...+++.. |++|.|+-
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-g~~~~~qrL~~--~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIY--SGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhh-CCChhhEEEEE--CCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 4799999987655443335599999999999876 46667777875 999999977777653 68888874
No 336
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=83.03 E-value=1.1e+02 Score=36.57 Aligned_cols=188 Identities=15% Similarity=0.054 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
.+..+|+.+-+.++|++.+.+..+++.... . ......=.+.|+.+|-. .|..-.+...... ++.-+...|.
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~-- 74 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN-- 74 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--
Confidence 345677888889999999999998766421 0 01122334555555532 3444444444332 2221111111
Q ss_pred hhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHHHH-----CCC-----HHHHH
Q 000187 974 PDTMKSYGDLAVFYYRLQH-TELALKYVKRALYLLHLTCGPS--HPN-TAATYINVAMMEEG-----LGN-----VHVAL 1039 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGd-yeeALey~~kALeL~~ki~G~d--hP~-~a~a~~NLA~iy~~-----lG~-----yeeAl 1039 (1888)
... ..+..-| .++ -++=..++...+.+....+-+. .+. .+..+-..|..|.- .|+ .+.|.
T Consensus 75 ~~~----~~~~~~y--r~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~ 148 (244)
T smart00101 75 EDH----VASIKEY--RGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTL 148 (244)
T ss_pred hHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 110 1111111 111 1333445666666665544332 111 12222222333321 222 45899
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcC
Q 000187 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeAle~lqkALeI~kk~LG 1096 (1888)
..|++|+++....+.+.||....+..|.+..|+. +++.++|....++|++-....+.
T Consensus 149 ~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld 206 (244)
T smart00101 149 VAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD 206 (244)
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998877788899888888888776664 69999999999988877655444
No 337
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=82.69 E-value=1.5 Score=54.80 Aligned_cols=132 Identities=23% Similarity=0.177 Sum_probs=89.8
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHHHHHh----cCC--CChhHHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHH
Q 000187 896 LLESSKTALDK-GKLEDAVTYGTKALAKLVAV----CGP--YHRMTAGAYS----LLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 896 LlelG~~~l~q-Gd~dEAie~~eeAL~l~eqi----~G~--dhpe~A~ay~----~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
+--+|..|... .+.-.|+.++.+++....+- ... ..|..+.-|. +...+-...+|.+ .+--+||.+
T Consensus 248 lEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~RmqaLii 324 (615)
T KOG0508|consen 248 LELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQALII 324 (615)
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHHHHHH
Confidence 33345555433 35677899999998876551 000 1111111111 1111222223332 234578999
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000187 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE 1030 (1888)
Q Consensus 965 ~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~ 1030 (1888)
.++++|++|+++.......|-+|..+|+++..+++++.||.+.++.+.+-.|.++..+...|.++.
T Consensus 325 rerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 325 RERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 999999999999877777889999999999999999999999999988888998888887777664
No 338
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=82.57 E-value=2.8 Score=40.96 Aligned_cols=68 Identities=18% Similarity=0.282 Sum_probs=52.7
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEecc
Q 000187 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
++|+|++.......+..-++++|.||++.|.... .|+.....|.+ +|..|+|. .|.+.. |++|.||..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qrL~~--~Gk~L~d~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLALLH--RETRLSSG-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEEEEE--CCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence 6899999987654444446699999999998876 47777777775 89999997 677643 699998864
No 339
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=81.60 E-value=1.9 Score=54.06 Aligned_cols=75 Identities=27% Similarity=0.274 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc
Q 000187 1000 VKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074 (1888)
Q Consensus 1000 ~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l 1074 (1888)
--+||-+.+.++|+.||++.......|-+|...|+++..++++.-||++.++.+.+-++.++..+...|+++..+
T Consensus 318 RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~m 392 (615)
T KOG0508|consen 318 RMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSFM 392 (615)
T ss_pred HHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHHH
Confidence 346777888899999999987777789999999999999999999999999999999999999999999887643
No 340
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.56 E-value=14 Score=39.43 Aligned_cols=73 Identities=23% Similarity=0.239 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---hh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---PD----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh---p~----ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+.++|...+..+++-.|+-.|++|+.+.++...... .+ ......|||.++..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999988731111 11 12567899999999999999999999887765443
No 341
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=81.19 E-value=2.3 Score=40.16 Aligned_cols=68 Identities=16% Similarity=0.221 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+.|.|+++++....+..-.+++|.++++.|..... +.-....|.+ +|..|+|...+.+.. |++|.||.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVG-IPVEQQRLIY--SGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-cCHHHeEEEE--CCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 47899999876655544456999999999988765 3444556664 999999977666643 68888873
No 342
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.97 E-value=15 Score=47.63 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=73.4
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 978 KSYGDLAVFYY-RLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 978 ~ay~nLA~ly~-~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
..+.++|.+|. .+|+..+|+.++..|+.+. ..|... .++..||.++.+.|...+|--.+..|+.-.
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~-----~~h~kd-i~lLSlaTiL~RaG~sadA~iILhAA~~dA------- 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFS-----SRHNKD-IALLSLATVLHRAGFSADAAVILHAALDDA------- 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhC-----Cccccc-chhhhHHHHHHHcccccchhheeehhccCC-------
Confidence 33445665554 5699999999999998764 333322 346679999999999999988887776543
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+..+.-++.++++|..+|+|...+.+|..|.+
T Consensus 280 -~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k 311 (886)
T KOG4507|consen 280 -DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQ 311 (886)
T ss_pred -ccccccceeHHHHHHHHhhhhhhhhhhhhhhc
Confidence 23344478899999999999999999987764
No 343
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.84 E-value=39 Score=40.80 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000187 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
++-++-+.++++-.+..-| ..+.+.++.++|..|.+.++.+.+.++..+.+.-.-. ..-..+...+-..||.+|..
T Consensus 92 eeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s--tg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 92 EEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS--TGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--cccchhhHHHHHHHHHhhcc
Confidence 4446666666666554422 3456889999999999999999999998887765433 22345667777889999877
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 990 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+.-.++.++.....++ + |.+....-..-...|.......+|.+|-.++-..+.-+.
T Consensus 168 ~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 168 RKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 7666666655544443 2 444333222223356666677788888888877766543
No 344
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.64 E-value=65 Score=45.41 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=53.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HHHHhcCCCcHH
Q 000187 988 YRLQHTELALKYVKRALYLLHLTC--GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK------CNQRLLGPDHIQ 1059 (1888)
Q Consensus 988 ~~lGdyeeALey~~kALeL~~ki~--G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALe------i~ek~~G~d~~~ 1059 (1888)
...+-|++|+.+|.--.+-.+.++ -.+|-....-+...|.+|...|+.++|+..|+.+.. +..+.. .....
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-~~~de 997 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLS-EGKDE 997 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-CCHHH
Confidence 345666777766543333222221 011222222345568889999999999998875543 333221 11122
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
....-..|+.-+..++++-+|-....+.+
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 22233455666667777766666554443
No 345
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.64 E-value=61 Score=41.20 Aligned_cols=118 Identities=15% Similarity=0.052 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHH
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH----RMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDI 964 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dh----pe~A~ay~~LA~ly~~lGdy---eeAl~~~eKAL~I 964 (1888)
.+-.+++.|+.++....|++|+..+.+|-+.+... +..- ..++..-..+-+||+.+.+. ..|..-+..|-.-
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~C-d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLC-DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh-hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 46778899999999999999999988887764332 1100 01122223345677776553 4455555445444
Q ss_pred HHHhcC-----------CCChhhH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 965 NERELG-----------LDHPDTM---KSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 965 ~Er~lG-----------~Dhp~ta---~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+++.+| .+.|+.+ ..+..-|.+.+.+|+-++|.++++.|...+...
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 444444 4455543 445566999999999999999999998877664
No 346
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.31 E-value=29 Score=46.96 Aligned_cols=36 Identities=22% Similarity=0.181 Sum_probs=30.6
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000187 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
+...++.++...|.-++..|++++|..+|-+++...
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 344567889999999999999999999999988753
No 347
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=80.14 E-value=2.5 Score=40.53 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=49.2
Q ss_pred EEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc--c-CceeEEe
Q 000187 29 TVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLT 95 (1888)
Q Consensus 29 tv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lV 95 (1888)
.|+++.+....+..-++++|.||++.|.... .++-....|.+ .|..|+|...+.+. + +++|+|+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~-gi~~~~q~Li~--~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAE-GVDPCCQRWFF--SGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHh-CCCHHHeEEEE--CCeECCCCCCHHHcCCCCCCEEEEE
Confidence 4678877666655446699999999998864 57888888875 99999998777653 3 5888875
No 348
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.01 E-value=73 Score=38.64 Aligned_cols=132 Identities=11% Similarity=0.134 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000187 950 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 950 dyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
.-++-++-+.++++-.+...| ..+.+.+..|+|.+|.+.++.+.+.+++.+.+.-.... | -..++..+...||.+|
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st-g-~KiDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST-G-LKIDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc-c-cchhhHHHHHHHHHhh
Confidence 344555666666666555332 24567899999999999999999999999887654332 2 2345666677788888
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000187 1030 EGLGNVHVALRYLHKALKCNQRLLGPDHI--QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1030 ~~lG~yeeAle~LekALei~ek~~G~d~~--~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
..+.-.++.++... .+.++ |.+.. +...+| .|.......+|.+|...+-..+..|.
T Consensus 166 ~d~~vV~e~lE~~~---~~iEk--GgDWeRrNRyK~Y--~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 166 GDRKVVEESLEVAD---DIIEK--GGDWERRNRYKVY--KGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred ccHHHHHHHHHHHH---HHHHh--CCCHHhhhhHHHH--HHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 76654444444333 33333 22221 222333 35555556677777777666665443
No 349
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=79.52 E-value=15 Score=41.69 Aligned_cols=131 Identities=20% Similarity=0.189 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-------CHHHHHHHHH
Q 000187 892 DGRQLLESSKTAL-----DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-------DFNQATIYQQ 959 (1888)
Q Consensus 892 ~A~~LlelG~~~l-----~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-------dyeeAl~~~e 959 (1888)
.+...|..|..++ ..+++..|++++..|-.. ....+.+++|.+++.-. +...|++|+.
T Consensus 67 y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~t 136 (248)
T KOG4014|consen 67 YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMT 136 (248)
T ss_pred CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHH
Confidence 3455566655544 245678888888877653 23356677887776532 2667888888
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHHHHHHhcCCCC
Q 000187 960 KALDINERELGLDHPDTMKSYGDLAVFYYRL------------------------QHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 960 KAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~l------------------------GdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
+|..+ ....+..+|...|+.. .+.++|+++..+|-++ +|
T Consensus 137 raCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel-------~~ 199 (248)
T KOG4014|consen 137 RACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL-------DI 199 (248)
T ss_pred HhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-------CC
Confidence 77664 1233445555554433 4556666666666553 34
Q ss_pred hhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHh
Q 000187 1016 PNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~----lG~yeeAle~LekALei~ek~ 1052 (1888)
| .+..|+..+|.. -++.++|..+-.+|+++.++.
T Consensus 200 ~---~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 200 P---QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred h---HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 4 556788888863 246789999999999998765
No 350
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=78.84 E-value=41 Score=41.37 Aligned_cols=130 Identities=12% Similarity=0.032 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Q 000187 912 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ 991 (1888)
Q Consensus 912 Aie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lG 991 (1888)
-++-+.++++-.+...|. .+...++.+.|..|.+.||-+.|++.+++...-.-. -....+...+...||.+|....
T Consensus 83 ki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs--~g~kiDVvf~~iRlglfy~D~~ 158 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS--LGHKIDVVFYKIRLGLFYLDHD 158 (393)
T ss_pred HHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh--cccchhhHHHHHHHHHhhccHH
Confidence 355566666666655443 466789999999999999999999988877653222 1223566777888999987665
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 992 HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 992 dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
-..+.+ ++|-.+.++ |.+....-..-..-|.......+|.+|-.+|-.++.-+.
T Consensus 159 lV~~~i---ekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 159 LVTESI---EKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHH---HHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 444443 344444444 444333322333356666777888888888887776543
No 351
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=78.43 E-value=3.5 Score=39.70 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 26 LDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|++. +..-..+ ++++|.||++.|..... ++-....|.| +|..|+|...+++.. +++|+||-
T Consensus 1 mqi~vk~~---~~~~l~v~~~~tV~~lK~~i~~~~g-ip~~~q~Li~--~Gk~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 1 MQLFVRAQ---NTHTLEVTGQETVSDIKAHVAGLEG-IDVEDQVLLL--AGVPLEDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred CEEEEECC---CEEEEEECCcCcHHHHHHHHHhhhC-CCHHHEEEEE--CCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 47889984 2333344 56999999999998654 7778888886 999999987777643 58998873
No 352
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=78.31 E-value=5.7 Score=52.47 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=12.6
Q ss_pred cccceeeccCCCCCCCCcccC
Q 000187 1592 ASAVAINMTLPPGPGAVTAVA 1612 (1888)
Q Consensus 1592 ~~~~~~~~~~~~~~~~~~~~~ 1612 (1888)
++|+.++-.+||-|++.||++
T Consensus 547 pPPlpggag~PPPPpplPg~a 567 (1102)
T KOG1924|consen 547 PPPLPGGAGPPPPPPPLPGIA 567 (1102)
T ss_pred CCCCCCCCCCCccCCCCCccc
Confidence 346666666666666666554
No 353
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=78.26 E-value=27 Score=36.75 Aligned_cols=101 Identities=19% Similarity=0.174 Sum_probs=64.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000187 983 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 983 LA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
+|.-++..|++-+|++..+..+... |.+. .....+.-.|.++.. ..+.+-=..|+..+++.+.+..+ -++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h----~~~~-~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH----GEDE-SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc----cCCC-chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 4677899999999999999987642 3332 222444556666653 34555566777778887766533 245
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
..|..++.||.-+...-.|++++.-.++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5677777777766555555555555555543
No 354
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.16 E-value=0.82 Score=55.58 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=76.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000187 944 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYI 1023 (1888)
Q Consensus 944 ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~ 1023 (1888)
-.+..|+++.|++++-.|+.+ +|..+..|..-|.++..+++...|++-|..|+.+ .++.+.-|-
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 344568899999999999886 6778899999999999999999999999999986 466666677
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 1024 NVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1024 NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.-|.....+|+|++|..+|+.|+++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 7788888999999999999888765
No 355
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.10 E-value=3.1 Score=32.77 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 979 SYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+++++|.+|..+|++++|+.+|++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6789999999999999999999998874
No 356
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=77.65 E-value=4.4 Score=34.60 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 000187 1062 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 1097 (1888)
Q Consensus 1062 ~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~ 1097 (1888)
.+|..||.+-...++|++|+.-|++|++|.++.+.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999999999887754
No 357
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=77.58 E-value=36 Score=42.90 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=74.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh------h----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000187 942 AVVLYHTGDFNQATIYQQKALDINERELGLDHP------D----TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp------~----ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
|..+|++++|..|...|+.||+++.+......+ + ...+...|..||..+++.+.|+.+..+.+.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----- 257 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----- 257 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence 455677888888888888888888764322211 1 1234567999999999999999999888864
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|....-+...|.++..+.+|.+|-+-+--|.-++
T Consensus 258 ---nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 ---NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred ---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666778889999999999988776665554
No 358
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.49 E-value=3.2 Score=30.66 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.++.++|.+|..++++++|..++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999864
No 359
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.15 E-value=3.3 Score=32.59 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000187 937 AYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
+++.+|.+|..+|++++|+.++++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6889999999999999999999998875
No 360
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=76.95 E-value=4.2 Score=39.12 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCc-ccccccccccccCCCccCCccccccc--c-CceeEEe
Q 000187 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTET-CSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~T-c~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lV 95 (1888)
++|+|+++.+....+-.-++++|.++++.|...... +.-....|.+ +|..|+|...+++. + |++|.|+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~--~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY--SGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE--CCEEccCCCCHHHcCCCCCCEEEEE
Confidence 479999998865554433559999999999987642 2555566765 99999997766664 3 5666554
No 361
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=76.68 E-value=4 Score=38.50 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCceEEEccCh-hhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc--c-CceeEEecc
Q 000187 26 LDITVNLPDDTRVILKGIST-DRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLTEE 97 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~-d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lVee 97 (1888)
|.|+|+.. .+.....++. ++|.++++.|.... .+.-.+..|.+ +|..|+|-..+.+. + |++|.|+.+
T Consensus 1 i~i~vk~~--g~~~~i~v~~~~tv~~lK~~i~~~~-gi~~~~q~L~~--~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 1 IRVRVKHG--GESHDLSISSQATFGDLKKMLAPVT-GVEPRDQKLIF--KGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CEEEEEEC--CEEEEEEECCCCcHHHHHHHHHHhh-CCChHHeEEee--CCcccCccCcHHHcCCCCCCEEEEecC
Confidence 46888886 3333444644 99999999999865 45667788875 89999987767665 3 799988753
No 362
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=76.20 E-value=5.2 Score=34.16 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
.+|..||.+....++|++|+.-|++||.+.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999888653
No 363
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=76.00 E-value=2.4e+02 Score=37.23 Aligned_cols=215 Identities=13% Similarity=0.027 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhc
Q 000187 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd---yeeALey~~kALeL~~ki~ 1011 (1888)
+..+...+.+|...|+...|-.+-.++..++|+......-.....|..++..-...-+ ++.--.++.+++.+...
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~-- 363 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI-- 363 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc--
Confidence 3444566778888888888877777777777774322222233444555544433333 55666667776665322
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.+. .+|.++-..-.+..=...|...|.+|-+.- .+..|..++.++. =|.+.+|..-|...++-.+.-
T Consensus 364 ---~~t--Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~---r~~hhVfVa~A~m----Ey~cskD~~~AfrIFeLGLkk- 430 (656)
T KOG1914|consen 364 ---DLT--LVYCQYMNFIRRAEGLKAARKIFKKAREDK---RTRHHVFVAAALM----EYYCSKDKETAFRIFELGLKK- 430 (656)
T ss_pred ---CCc--eehhHHHHHHHHhhhHHHHHHHHHHHhhcc---CCcchhhHHHHHH----HHHhcCChhHHHHHHHHHHHh-
Confidence 222 233333333344444567777777776542 1233444444432 366789999999888776643
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 1092 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1092 kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
+|..-.-......+|..+. ....++++.+...... .......++|..+=.....-|+...+++.-++-..
T Consensus 431 ---f~d~p~yv~~YldfL~~lN--dd~N~R~LFEr~l~s~-----l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 431 ---FGDSPEYVLKYLDFLSHLN--DDNNARALFERVLTSV-----LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ---cCCChHHHHHHHHHHHHhC--cchhHHHHHHHHHhcc-----CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3333322223333333332 2233334433222110 00112345666666666777888877776665554
Q ss_pred Hhc
Q 000187 1172 VKG 1174 (1888)
Q Consensus 1172 L~d 1174 (1888)
...
T Consensus 501 af~ 503 (656)
T KOG1914|consen 501 AFP 503 (656)
T ss_pred hcc
Confidence 443
No 364
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.00 E-value=2.5e+02 Score=36.40 Aligned_cols=135 Identities=17% Similarity=0.137 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHH--
Q 000187 891 ADGRQLLESSKTALDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI--YQQKALDIN-- 965 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd-~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~--~~eKAL~I~-- 965 (1888)
.++..|+.-|..++..|. -++|+.+++.++.... .+. .|.+.. ..+....|.+|+. .+-+.+.+-
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~-----yD~---ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN-----YDI---ECENIV--FLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc-----ccH---HHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346667777888888888 6778888888887621 111 222211 1112223444443 122222221
Q ss_pred HHhcCCCChhh--HHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000187 966 ERELGLDHPDT--MKSYGD--LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 966 Er~lG~Dhp~t--a~ay~n--LA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
-...|...... ...-+. =|.+++.+|+|.++.-|..-..++ .| ...+|.-+|.++...++|++|..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11123322111 122223 366788999999998766555544 24 346778899999999999999998
Q ss_pred HHH
Q 000187 1042 LHK 1044 (1888)
Q Consensus 1042 Lek 1044 (1888)
+..
T Consensus 518 l~~ 520 (549)
T PF07079_consen 518 LQK 520 (549)
T ss_pred HHh
Confidence 863
No 365
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=75.58 E-value=1.5e+02 Score=37.48 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=27.4
Q ss_pred hcccHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHh
Q 000187 886 AACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 926 (1888)
Q Consensus 886 ~~~~s~~A~~LlelG~~~l~qG---------d~dEAie~~eeAL~l~eqi 926 (1888)
.......+..+|++|..+-+.| .+.+|..+|++|-..+.-+
T Consensus 99 ~sl~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l 148 (350)
T cd09244 99 RSVAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYL 148 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778888887775433 2678888998887765433
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.56 E-value=3.2 Score=30.68 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
.++..+|.+|..+|++++|+..+++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999875
No 367
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=75.26 E-value=4.6 Score=38.54 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|+++++....+..-.+++|.++++.|..... ++-.+..|.+ +|..|+|...+.+.. |++|.|+-
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-~~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhC-CCHHHeEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 47999999876554443456999999999999764 4556677775 999999987777643 57777763
No 368
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.24 E-value=27 Score=39.13 Aligned_cols=91 Identities=22% Similarity=0.169 Sum_probs=69.3
Q ss_pred ccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000187 888 CSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
+.......|++.....+..++.+++..++. |+..+ .|.....-..-|+++...|++.+|+.+++....
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~-ALrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~---- 72 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLD-ALRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE---- 72 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHH-HHHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc----
Confidence 445556778888888899999999887775 44442 566677778889999999999999999988533
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHH
Q 000187 968 ELGLDHPDTMKSYGDLAVFYYRLQHTE 994 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~lGdye 994 (1888)
+.+....+-..+|.|++.+|+.+
T Consensus 73 ----~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 ----RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ----cCCCChHHHHHHHHHHHHcCChH
Confidence 34556666677888888888763
No 369
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.16 E-value=2e+02 Score=34.77 Aligned_cols=158 Identities=13% Similarity=0.039 Sum_probs=80.9
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000187 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
.+++|++|++++..... .+...|++.-|.++..-.++.+++.. .+.......+|+
T Consensus 2 ~~kky~eAidLL~~Ga~----------------------~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~ 56 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGAL----------------------ILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLI 56 (260)
T ss_dssp HTT-HHHHHHHHHHHHH----------------------HHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH----------------------HHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHH
Confidence 45667777766655433 34444555555555555555555421 111222335666
Q ss_pred HHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHH---HH--Hhc
Q 000187 985 VFYYRLQHTE-LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA-----LKC---NQ--RLL 1053 (1888)
Q Consensus 985 ~ly~~lGdye-eALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA-----Lei---~e--k~~ 1053 (1888)
.++.....-+ +-..+..+|+.-. + .|...-.....+..+|.+|.+.|++.+|..+|-.+ ... .. ...
T Consensus 57 ~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~ 134 (260)
T PF04190_consen 57 ELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK 134 (260)
T ss_dssp HHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 6666665433 3445666676655 3 23222223456777999999999999999988321 111 00 111
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|..+ .......+...-|...++...|...+..-.+.
T Consensus 135 ~~~~-e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPS-EADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2222 11222223334567789999888877655544
No 370
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=74.99 E-value=70 Score=40.39 Aligned_cols=56 Identities=16% Similarity=0.063 Sum_probs=33.8
Q ss_pred ChhHHHHhhhccchhhhcccHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHh
Q 000187 870 PFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 926 (1888)
Q Consensus 870 ~F~~eDIlnl~PvvK~~~~~s~~A~~LlelG~~~l~qG---------d~dEAie~~eeAL~l~eqi 926 (1888)
.|.-.|... ...+.+.......+..+|++|..+.+.| .+.+|..+|+.|-..++.+
T Consensus 92 ~F~W~d~~~-~~~~~~~~l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l 156 (361)
T cd09239 92 PFTWTDIFS-GSEVTHEDIKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYL 156 (361)
T ss_pred eeeeecccC-CCchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 454445433 2222333345566788888887776544 2677888999887765433
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=74.63 E-value=57 Score=42.27 Aligned_cols=91 Identities=22% Similarity=0.191 Sum_probs=44.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH----------------HHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK----------------ALDI 964 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eK----------------AL~I 964 (1888)
+..+..|+++++..+.... .+...+ . ..-...++..+..+|.++.|+.+.+. |+++
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i----~---~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNI----P---KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG---------HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccC----C---hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHH
Confidence 5556778888876666311 111111 1 12355667777777877777755322 2222
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000187 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 965 ~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
++ ..+....|..||.....+|+++-|.++|+++-.
T Consensus 341 a~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 341 AK------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp CC------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HH------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 11 112234566777777777777777777766543
No 372
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=74.13 E-value=39 Score=44.14 Aligned_cols=74 Identities=15% Similarity=0.022 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 976 TMKSYGDLAVFYYRL--QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 976 ta~ay~nLA~ly~~l--GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
...++.+||.+.... ..-..++.+|.+|+...+..|+..|- .-|..+|-.|.+.++|.+|+.++-+|-...+.+
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Y 351 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRKY 351 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTS
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345666666665432 33467899999999999998875553 345668999999999999999998887765443
No 373
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=74.11 E-value=53 Score=40.45 Aligned_cols=132 Identities=10% Similarity=0.064 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000187 952 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 952 eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
++-++-+.++++-.++.+|. .+...++.+.|.+|.+.|+-+.|++.+.+..+-.-. .| ...++......+|.+|..
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs-~g-~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVS-LG-HKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh-cc-cchhhHHHHHHHHHhhcc
Confidence 34455566677777776554 467789999999999999999999999887664322 22 234566677788888865
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000187 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
. +--.+.+++|-.+.++-..-+..+...+| -|.......+|.+|-.++-.++..|.
T Consensus 157 ~---~lV~~~iekak~liE~GgDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 157 H---DLVTESIEKAKSLIEEGGDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred H---HHHHHHHHHHHHHHHhCCChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHccccc
Confidence 4 33344445555555442111122333344 35555666778888777777665543
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.95 E-value=36 Score=41.28 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+...+..|...|.+.+|+++.++++.+ ||..-..+..|-.+|..+||--.|...|++--...++-+|.+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 445566678999999999999999999987 666667888899999999999999999999988888888887
Q ss_pred ChhhHH
Q 000187 973 HPDTMK 978 (1888)
Q Consensus 973 hp~ta~ 978 (1888)
-.+.+.
T Consensus 351 vddsie 356 (361)
T COG3947 351 VDDSIE 356 (361)
T ss_pred cchhHH
Confidence 555443
No 375
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.66 E-value=15 Score=42.42 Aligned_cols=65 Identities=23% Similarity=0.182 Sum_probs=51.1
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHH
Q 000187 928 GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELAL 997 (1888)
Q Consensus 928 G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeAL 997 (1888)
|...-+.+...+.||..|. ..+.++|+.++.+++.++.. ++.-....+..||.+|+.+|+++.|.
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4444456778888887666 67899999999999998643 33344677889999999999999985
No 376
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.77 E-value=19 Score=46.71 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 936 GAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 936 ~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
..+.++|..|++ +|+.-+|+..+..|+-..-+ |.. -.++..||.++++.|...+|--.+..|+.-.
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~-----h~k-di~lLSlaTiL~RaG~sadA~iILhAA~~dA------- 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSR-----HNK-DIALLSLATVLHRAGFSADAAVILHAALDDA------- 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc-----ccc-cchhhhHHHHHHHcccccchhheeehhccCC-------
Confidence 345667766665 69999999999999887432 322 2456789999999999999877776665432
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+....-++.+|.+|..++.|.....+|..|++.
T Consensus 280 -~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 -DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred -ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 233334677899999999999888888877764
No 377
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=71.28 E-value=5.3 Score=37.50 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=46.5
Q ss_pred CCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEecc
Q 000187 34 DDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 34 ~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
.+....+..-++++|.|+++.|..... .......|.| +|..|+|...|.++. |++|.|+-.
T Consensus 4 ~g~~~~~~v~~~~tV~~lK~~i~~~~~-~~~~~~~L~~--~G~~L~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 4 SGKTFTLEVDPDDTVADLKQKIAEETG-IPPEQQRLIY--NGKELDDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp TSEEEEEEEETTSBHHHHHHHHHHHHT-STGGGEEEEE--TTEEESTTSBTGGGTTSTTEEEEEEES
T ss_pred CCcEEEEEECCCCCHHHhhhhcccccc-cccccceeee--eeecccCcCcHHHcCCCCCCEEEEEEe
Confidence 333333344467999999999999777 6677788876 999999988888864 698888754
No 378
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=71.22 E-value=69 Score=40.63 Aligned_cols=115 Identities=17% Similarity=0.021 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHhcCCHHHHHHHHHHHH-------
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAV--VLYHTGDFNQATIYQQKAL------- 962 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~--ly~~lGdyeeAl~~~eKAL------- 962 (1888)
.+..-...++.++..++|..|...|.+++... ...........|..|+. .+|..-++++|..++++.+
T Consensus 129 ~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~ 205 (380)
T TIGR02710 129 EGNTEQGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALY 205 (380)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhh
Confidence 34455556778899999999999999988652 11122223345555554 4577889999999998211
Q ss_pred ------------HHHHHhcCC------------CChh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000187 963 ------------DINERELGL------------DHPD--TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 963 ------------~I~Er~lG~------------Dhp~--ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.......+. .++. .+..+..=|.--..+|+|+.|+..+.+++++..+
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 206 QVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred hhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 000001100 0111 1112222233445789999999999999998654
No 379
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=71.19 E-value=2.4e+02 Score=34.04 Aligned_cols=148 Identities=12% Similarity=0.030 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdye-eAl~~~eKAL~I~Er~lG~ 971 (1888)
...++.-|..+++.|++..|.++..-.++.+.+..... .......|+.++...+.-+ +-..+..+|+... + .|.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~---~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~ 84 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPV---DEESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGS 84 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCC
Confidence 45566667888999999999999988888877742222 2234467777777776443 4566888899988 3 244
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcCCCChhHHHHH-HHHHHHHHHCCCHHHHH
Q 000187 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRA-----------LYLLHLTCGPSHPNTAATY-INVAMMEEGLGNVHVAL 1039 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kA-----------LeL~~ki~G~dhP~~a~a~-~NLA~iy~~lG~yeeAl 1039 (1888)
........+..+|..|...+++.+|..+|-.+ +..|... |. +.....+ ...-..|..+++...|.
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~--~~e~dlfi~RaVL~yL~l~n~~~A~ 161 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GY--PSEADLFIARAVLQYLCLGNLRDAN 161 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TS--S--HHHHHHHHHHHHHHTTBHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cC--CcchhHHHHHHHHHHHHhcCHHHHH
Confidence 44445677888999999999999999887432 1222221 22 1122233 33344577889999998
Q ss_pred HHHHHHHHH
Q 000187 1040 RYLHKALKC 1048 (1888)
Q Consensus 1040 e~LekALei 1048 (1888)
..+..-++.
T Consensus 162 ~~~~~f~~~ 170 (260)
T PF04190_consen 162 ELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877766655
No 380
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=70.85 E-value=39 Score=44.16 Aligned_cols=70 Identities=19% Similarity=0.112 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000187 935 AGAYSLLAVVLYHT--GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 935 A~ay~~LA~ly~~l--GdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
..++.+||.+--.. ..-..++.+|++|+...++.++..| ..-|..+|-+|++.++|.+|+.++-.|-...
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~H---vYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi 348 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHH---VYPYTYLGGYYYRHKRYREALRSWAEAADVI 348 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT-----SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCc---cccceehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666654432 3345689999999999999886544 4567889999999999999999888876654
No 381
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=70.72 E-value=11 Score=37.69 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=56.9
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000187 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
+..++|.|+.++...+.+..=.+++|..|-+.+.+... .....+.|.+ +|.+|+|...+.++. |++|.++
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~g-i~~~~~rf~f--~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQG-LSMNSVRFLF--DGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhC-CCccceEEEE--CCeECCCCCCHHHcCCCCCCEEEEE
Confidence 56789999999888777776577999999999998764 4677888886 999999987777764 6777776
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.40 E-value=1.1e+02 Score=38.92 Aligned_cols=139 Identities=17% Similarity=0.078 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY--YRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly--~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
-....+.-++..++|..|...+...+.- + ... .. ...|..|+..| ...-++.+|.+++++.+......
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l-~~~-~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---L-PGR-EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---C-Cch-hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 3445666778899999999999887652 2 111 11 45566665554 55677899999999877642210
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
......+..+..+ -++...+...+.........-.......++..|.--...|+|+.|+..+=++++++.+
T Consensus 203 -~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 -NQEREGLKELVEV-------LKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred -HhHHHHHHHHHHH-------HHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0001111111111 1222222222222111100001222223333344445689999999999888887654
No 383
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=70.28 E-value=53 Score=41.16 Aligned_cols=57 Identities=16% Similarity=0.049 Sum_probs=33.2
Q ss_pred CChhHHHHhhhccchhhhcccHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHH
Q 000187 869 SPFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 925 (1888)
Q Consensus 869 ~~F~~eDIlnl~PvvK~~~~~s~~A~~LlelG~~~l~qG---------d~dEAie~~eeAL~l~eq 925 (1888)
..|.-.|...-...+.........+..+|++|..+.+.| .+.+|..+|++|-..++-
T Consensus 83 v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~ 148 (348)
T cd09242 83 VDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQY 148 (348)
T ss_pred ceeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 344444443312223334445556777788776665433 367788999998877653
No 384
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.38 E-value=19 Score=45.24 Aligned_cols=105 Identities=21% Similarity=0.221 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--cC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE--LG 970 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~--lG 970 (1888)
-+.+.++|..|+..|+++.|+..|.++-..+.+ ...++..+.++-.+...+|+|..-..+..+|....... ..
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~ 224 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLA 224 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHH
Confidence 456777889999999999999999997776543 24566788888899999999999888888887652100 00
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000187 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kAL 1004 (1888)
..-+.-+.++. |+....+++|..|.+++-.+.
T Consensus 225 q~v~~kl~C~a--gLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 225 QEVPAKLKCAA--GLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HhcCcchHHHH--HHHHHHHHHHHHHHHHHHhCC
Confidence 01122234444 445555668999988887654
No 385
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.23 E-value=1.2e+02 Score=40.08 Aligned_cols=172 Identities=15% Similarity=0.056 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHH----hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC------------
Q 000187 993 TELALKYVKRALYLLHL----TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD------------ 1056 (1888)
Q Consensus 993 yeeALey~~kALeL~~k----i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d------------ 1056 (1888)
|++|...|.-|.....- ..-..+|..+..+..+|.+...+|+.+-|..+.+++|=....++-+.
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Confidence 44555555555443321 01124688888999999999999999999999999998776653221
Q ss_pred ----cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C
Q 000187 1057 ----HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD-DLRTQDAAAWLEYFESKAFEQQEAARNGTRK-P 1130 (1888)
Q Consensus 1057 ----~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~d-h~~tl~a~~~La~L~qka~e~AeAl~~~~~~-~ 1130 (1888)
......+++..-+-+...|-+..|.++++-.+. +.+. ++...........+....++.-..+.+.... .
T Consensus 334 ~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKllls-----Ldp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLS-----LDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----cCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 112223344444556678999999988865553 3444 5544333322223333333322222111100 0
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHhc
Q 000187 1131 DASIASKGHLSVSDLLDYINPSHDTKGR---NVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGd---yeEAleyyeKALeL~d 1174 (1888)
.......-.-+++ |+..|..+.. -+.|...+.+|+.+..
T Consensus 409 ~l~~~PN~~yS~A-----lA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 409 KLSQLPNFGYSLA-----LARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred cHhhcCCchHHHH-----HHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 0000111011222 3334444333 5678899999998877
No 386
>PRK10941 hypothetical protein; Provisional
Probab=69.03 E-value=31 Score=41.70 Aligned_cols=78 Identities=22% Similarity=0.215 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
..+.||-.+|...++++.|+.+.++.+.+ .+++|. -+...|.+|.++|.+..|+.-|+.-++.+ ++.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~d 248 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQF-----DPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PED 248 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CCc
Confidence 55678889999999999999999999875 455553 34568999999999999999999888776 555
Q ss_pred HHHHHHHHHHH
Q 000187 1058 IQTAASYHAIA 1068 (1888)
Q Consensus 1058 ~~tA~al~nLA 1068 (1888)
+....+...+.
T Consensus 249 p~a~~ik~ql~ 259 (269)
T PRK10941 249 PISEMIRAQIH 259 (269)
T ss_pred hhHHHHHHHHH
Confidence 55555444443
No 387
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=69.00 E-value=30 Score=37.04 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---h----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---N----TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP---~----~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+..+|...+..+++-.|+-+|++|+.+.+.....+.. + ......|||..+..+|+-+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999998886322211 1 23457899999999999999999999887765443
No 388
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.84 E-value=2.7e+02 Score=34.91 Aligned_cols=94 Identities=10% Similarity=0.095 Sum_probs=66.1
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 000187 987 YYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHA 1066 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~n 1066 (1888)
..+.++.++|++++++..+-....-.+ -.+......+|.++...|+..++.+.+...-.......+-...-.+..|..
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 345568999999999998876553222 245667788999999999999999999988887766655443333343433
Q ss_pred HHHHHHHcCChHHHHH
Q 000187 1067 IAIALSLMEAYPLSVQ 1082 (1888)
Q Consensus 1067 LA~ay~~lGdydeAle 1082 (1888)
=++.|...|+|..+..
T Consensus 163 ssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 163 SSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHhHHHHHH
Confidence 4456667788875433
No 389
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.11 E-value=76 Score=36.15 Aligned_cols=99 Identities=11% Similarity=0.004 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000187 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA--ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a--~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+.+..|.+....|+...|..+|..+-.- ..-|... .+...-|.++...|-|++-... .+.+.+
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~ 160 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRAAYLLVDNGSYDDVSSR-------VEPLAG 160 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHHHHHHhccccHHHHHHH-------hhhccC
Confidence 456678899999999999999999886542 1223332 2344567788888888765443 334556
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
+.++....+...||.+-++.|+|..|..+|.+..
T Consensus 161 d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 161 DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 7788888888999999999999999999987554
No 390
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=68.09 E-value=30 Score=48.47 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
-.+...+|..+..+-.-..--+.|.+|+..+..++|. +....-|..-|.+|+++|+|++-+++|.-|++.+ ++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 584 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQ 584 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CC
Confidence 3455666665554432222225677777777776543 3333457788999999999999999999999876 56
Q ss_pred cHHHHHHHHHHH-HHHHH-cCChHHHHHHHHHHHHHHH
Q 000187 1057 HIQTAASYHAIA-IALSL-MEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1057 ~~~tA~al~nLA-~ay~~-lGdydeAle~lqkALeI~k 1092 (1888)
||......-.+. +++.. ..+...|+.++--++.++-
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (932)
T PRK13184 585 HPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAP 622 (932)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 665554433222 11111 1233456666665655543
No 391
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.01 E-value=2.3e+02 Score=37.65 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=86.3
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-------------ChhhH---HHHHHHHHHHHHcCCH
Q 000187 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-------------HPDTM---KSYGDLAVFYYRLQHT 993 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D-------------hp~ta---~ay~nLA~ly~~lGdy 993 (1888)
.+|.....+..+|.+...+|+.+.|..+.+++|-..++.+-+. ++..- .+++..=..+...|-+
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~ 358 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCW 358 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCCh
Confidence 4677778899999999999999999999999999988865321 11111 1112222234566888
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 000187 994 ELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS 1072 (1888)
Q Consensus 994 eeALey~~kALeL~~ki~G~d-hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~ 1072 (1888)
..|+++++-.+.+ .+. +|..+.. .+-....+..+|+==+++++..-... ++ ..-+..+.+ ..||..|.
T Consensus 359 rTA~E~cKlllsL-----dp~eDPl~~l~--~ID~~ALrareYqwiI~~~~~~e~~n-~l--~~~PN~~yS-~AlA~f~l 427 (665)
T KOG2422|consen 359 RTALEWCKLLLSL-----DPSEDPLGILY--LIDIYALRAREYQWIIELSNEPENMN-KL--SQLPNFGYS-LALARFFL 427 (665)
T ss_pred HHHHHHHHHHhhc-----CCcCCchhHHH--HHHHHHHHHHhHHHHHHHHHHHHhhc-cH--hhcCCchHH-HHHHHHHH
Confidence 8888888776654 233 4543322 23333334455554455444432221 11 011222222 13455555
Q ss_pred HcCC---hHHHHHHHHHHHHHH
Q 000187 1073 LMEA---YPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1073 ~lGd---ydeAle~lqkALeI~ 1091 (1888)
.... ...|+..+.+|+..+
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhC
Confidence 5444 567777888877654
No 392
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=66.25 E-value=1.8e+02 Score=36.16 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
..+.+++.+|..+...+++.+|+.+++.|...++.
T Consensus 249 ~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~ 283 (345)
T cd09034 249 FKALAYYYHGLKLDEANKIGEAIARLQAALELLKE 283 (345)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 45666677777777777888888888887765544
No 393
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.95 E-value=26 Score=32.10 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000187 1062 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAA 1106 (1888)
Q Consensus 1062 ~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~ 1106 (1888)
.+++.||..+.++|+|++|..+.+.++++ .|++.+.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHH
Confidence 36788999999999999999999999865 57766554443
No 394
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.67 E-value=1.9e+02 Score=35.88 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000187 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
.++.+...||.+|..-+++..|...+. ++..-.-....|....+..|..+|.+|...++..+|..|..++--+....
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-- 177 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-- 177 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc--
Confidence 457788899999999999988776442 11110000001223346778899999999999999999999986554332
Q ss_pred CCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000187 1013 PSHPNT-AATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 1013 ~dhP~~-a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
.++.. ...-...|.++...++|-+|-..|-+.
T Consensus 178 -~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 178 -SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22322 222334566777777776665555443
No 395
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=65.35 E-value=19 Score=35.57 Aligned_cols=57 Identities=25% Similarity=0.333 Sum_probs=45.2
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCc
Q 000187 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDA 81 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~ 81 (1888)
+..|.|.||++..+...--.+|+|.||++++..+....-...|.|..-+=...|.|.
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~ 60 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDE 60 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCC
Confidence 578999999999999888889999999999998765555678888754444556663
No 396
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=65.11 E-value=1.1e+02 Score=38.56 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.+.+++..|..+...+++.+|+.+++.|...++.
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 4556666777777777888888888877765443
No 397
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=64.85 E-value=3.6e+02 Score=34.19 Aligned_cols=35 Identities=9% Similarity=-0.117 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
..+.+++..|..+...+++.+++.+++.|...+.+
T Consensus 250 f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~ 284 (361)
T cd09239 250 YASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEE 284 (361)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777778888899988888775433
No 398
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=64.58 E-value=48 Score=39.32 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHh
Q 000187 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-GLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 993 yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~-~lG~yeeAle~LekALei~ek~ 1052 (1888)
.++|...|++|+.+....+.+.||..+....|.+..|. -+|+.++|+...++|++-....
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~ 202 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISE 202 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 37899999999999999889999999999999998875 4899999999999998876443
No 399
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=64.56 E-value=3.8e+02 Score=33.85 Aligned_cols=34 Identities=15% Similarity=0.002 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
..+.+++..|..+...+++.+|+.+++.|...+.
T Consensus 245 f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~ 278 (353)
T cd09246 245 FRAEALYRAAKDLHEKEDIGEEIARLRAASDALA 278 (353)
T ss_pred HHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHH
Confidence 4567777888888888999999999998876543
No 400
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=64.13 E-value=3.9e+02 Score=33.78 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=33.8
Q ss_pred ChhHHHHhhhccchhhhcccHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHh
Q 000187 870 PFRKIDVVSLVPVHKQAACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 926 (1888)
Q Consensus 870 ~F~~eDIlnl~PvvK~~~~~s~~A~~LlelG~~~l~qG---------d~dEAie~~eeAL~l~eqi 926 (1888)
.|.-.|...-...+.........+..+|+.|..+.+.| .+.+|..+|++|-..++.+
T Consensus 88 ~F~W~d~~~~~~~~~~~sl~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 153 (353)
T cd09246 88 SFSWYDAFRPHRKATQANVHFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHL 153 (353)
T ss_pred eeEeeccCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 44444433222233344455666778888887664433 2678889999988765443
No 401
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=63.72 E-value=15 Score=36.37 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=50.9
Q ss_pred EEEEEEcCCCCceEEE-cc-ChhhHHHHHHHhhhcC-CcccccccccccccCCCccCCccccccc----c-CceeEEec
Q 000187 26 LDITVNLPDDTRVILK-GI-STDRIIDVRRLLSVNT-ETCSITNFSLSHEIRGPRLKDAVDVAAL----K-PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~-~i-s~d~v~dvrq~L~~~~-~Tc~~T~fsL~~~~~G~~L~d~~ei~~l----k-~~~L~lVe 96 (1888)
|+|+|+.|+.....+. .+ .+++|.|+++.|.... ..|.-..--|-| +|.-|+|-..|.++ + |-+++||.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy--~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY--SGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE--cCeeccchhhHHHHhhcccCCceEEEEe
Confidence 7899999998873333 33 6699999999999764 344445556765 99999997766665 2 47888874
No 402
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.70 E-value=52 Score=35.99 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000187 1018 TAATYINVAMMEEGLGNV---HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~y---eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
...+.+++|+++....+. .+.+.+|+..++ . ......-.+++.||..+++.++|+.|+.+.+..++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~-----~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---- 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-S-----AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---- 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-h-----cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh----
Confidence 457788999999876654 455666655554 1 122234567888999999999999999999877754
Q ss_pred cCCCCHHHHHHH
Q 000187 1095 LGPDDLRTQDAA 1106 (1888)
Q Consensus 1095 LG~dh~~tl~a~ 1106 (1888)
.+++.+.....
T Consensus 101 -e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 101 -EPNNRQALELK 111 (149)
T ss_pred -CCCcHHHHHHH
Confidence 35555544333
No 403
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=63.37 E-value=15 Score=35.83 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=37.1
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccc
Q 000187 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLS 70 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~ 70 (1888)
....|.|.+|++..+...--++|+|+||++++........-..|.|.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~ 51 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELI 51 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEE
Confidence 46789999999988777777889999999999765544443347775
No 404
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.08 E-value=11 Score=47.81 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 937 AYSLLAVVLYHTGDFNQATIYQQKALDINER-ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er-~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
++..|.+++..+|||..|+..++-. ++.++ ++..-.+-.+..++.+|.+|+.+++|.+|++.|...+-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778999999999999876432 22111 1222233456788999999999999999999999998766553
No 405
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=62.96 E-value=53 Score=38.91 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000187 954 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 954 Al~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
|..+|.+|+.+ .|.....|++||.++...|+.=.|+-||.|++.. .+|- ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999998 4788899999999999999999999999999853 2454 5567778887776
No 406
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=62.82 E-value=1.6e+02 Score=37.55 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhh-----HHHHHHHHHHHHH-------cCC------
Q 000187 935 AGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDT-----MKSYGDLAVFYYR-------LQH------ 992 (1888)
Q Consensus 935 A~ay~~LA~ly~~l----GdyeeAl~~~eKAL~I~Er~lG~Dhp~t-----a~ay~nLA~ly~~-------lGd------ 992 (1888)
..+...++.+|..+ .+.+.-+.++++-+++.+.++..-++.. -..+..||.+|.. ..+
T Consensus 171 v~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~ 250 (371)
T PF12309_consen 171 VQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDN 250 (371)
T ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 34444455544443 6677777888888888777665444431 1334445555432 222
Q ss_pred --------------HHHHHHHHHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
Q 000187 993 --------------TELALKYVKRALYLLHLTCGPS---------HPNTAATYINVAMMEEGL--GNVHVALRYLHKALK 1047 (1888)
Q Consensus 993 --------------yeeALey~~kALeL~~ki~G~d---------hP~~a~a~~NLA~iy~~l--G~yeeAle~LekALe 1047 (1888)
...|+.+|+.-+..+...-+.. ......++..+|.+|.+. ++..+=++.+.++|.
T Consensus 251 ~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~ 330 (371)
T PF12309_consen 251 EPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLE 330 (371)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHH
Confidence 1345566666665554211011 112467888999999876 455555555555555
Q ss_pred HHH
Q 000187 1048 CNQ 1050 (1888)
Q Consensus 1048 i~e 1050 (1888)
.++
T Consensus 331 ~y~ 333 (371)
T PF12309_consen 331 YYK 333 (371)
T ss_pred HHH
Confidence 543
No 407
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=62.75 E-value=1.2e+02 Score=36.28 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 000187 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 993 yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~ 1049 (1888)
.++|+..|+.|+++....+.+.||..+....|.+..|.. +++.++|+...++|++-.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 468999999999998877889999998888898888765 588999998888887654
No 408
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=62.39 E-value=2.3e+02 Score=34.81 Aligned_cols=157 Identities=16% Similarity=0.064 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH-----------HHH-HHHHHHHH--HcCCHHHHHHHHHHH
Q 000187 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM-----------KSY-GDLAVFYY--RLQHTELALKYVKRA 1003 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta-----------~ay-~nLA~ly~--~lGdyeeALey~~kA 1003 (1888)
.-.++.++|..-+.+.|...++.++-..++++|.++.-+. ..+ ..++.+.. ..|....+...++++
T Consensus 43 Re~l~~llWe~~~~~~Ar~nLR~~l~~lRk~l~~~~~il~t~~~~~~L~~~~~~~iD~~~F~~~~~a~~~~~~~~~~~~~ 122 (280)
T COG3629 43 REKLAGLLWEDSDPSRARANLRTTLHNLRKLLGDGDVILATEGPGVTLNPGADITIDAGRFEAEARAGLKARAGLRFEQA 122 (280)
T ss_pred HHHHHHhccCCCChhHHHHHHHHHHHHHHHhcCCcceeeecCCCceEecCccceeecHHHHHHhHhcccchhhhHHHHHH
Confidence 3455666777777777888888888877777773221100 000 12222221 122222233344444
Q ss_pred HHHHHH--hcCCCCh-------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000187 1004 LYLLHL--TCGPSHP-------------NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068 (1888)
Q Consensus 1004 LeL~~k--i~G~dhP-------------~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA 1068 (1888)
..++.. ..+.+|- ..+.++..++..+...|+++.++..+++.+.+ ++..-..|..+-
T Consensus 123 ~~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm 194 (280)
T COG3629 123 GELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLM 194 (280)
T ss_pred HHHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHH
Confidence 444431 1111111 23456777888888999999999888877765 344556777788
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000187 1069 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1069 ~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~t 1102 (1888)
.+|...|+...|+..|++........+|.+-...
T Consensus 195 ~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 195 EAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 8999999999999999999988888888775543
No 409
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=62.24 E-value=10 Score=36.40 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=45.1
Q ss_pred EEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcc-cccc--cc-CceeEE
Q 000187 28 ITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAV-DVAA--LK-PCVLSL 94 (1888)
Q Consensus 28 itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~-ei~~--lk-~~~L~l 94 (1888)
|||+++....+....+ ++++|.||++.|..... +.-....|.| +|..|+|-. -+.+ ++ |+.|.|
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~g-ip~~~q~Li~--~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESG-IPASQQQLIY--NGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhC-CCHHHeEEEE--CCeEccCCcccHHHcCCCCCCEEEE
Confidence 6899994344444556 44999999999998654 6667788886 999998853 2333 44 576655
No 410
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=61.77 E-value=77 Score=44.65 Aligned_cols=109 Identities=17% Similarity=0.109 Sum_probs=71.8
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 000187 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 981 (1888)
Q Consensus 902 ~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~ 981 (1888)
+++....|++|+..|++.-.-+ +...+--.+...+|..+..+-.-..--..+.+||..++++.| .+....-|.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 556 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG--GVGAPLEYL 556 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC--CCCCchHHH
Confidence 3444556666666666654321 122233456677777666543333333677788888777653 345567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000187 982 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 1022 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~ 1022 (1888)
.-|.+|.++|+|++-+++|.-|+.-+ ++||.+....
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 592 (932)
T PRK13184 557 GKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLR 592 (932)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHH
Confidence 89999999999999999999998764 5688776543
No 411
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.68 E-value=2.2e+02 Score=35.20 Aligned_cols=97 Identities=20% Similarity=0.092 Sum_probs=61.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--------
Q 000187 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG-------- 970 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG-------- 970 (1888)
.-+..+...+-.+-++...+||++ +++.+.+|..||.--. --..+|..++++|+...+-.+.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQ 259 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 335555666667677777777776 5777788877775322 2345777788887776544321
Q ss_pred -C--------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000187 971 -L--------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 971 -~--------Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
. |..-...+-..||.|..++|+..+|.+.++....
T Consensus 260 ~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 260 SPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred ccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1 1111223345788888889998888888776544
No 412
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=61.31 E-value=1.7e+02 Score=36.98 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
..+.+++..|......+++.+++.+++.|...+.+
T Consensus 235 f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 235 FKAAAHYRMALVALEKSKYGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45666777787777788888999999988876544
No 413
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=61.19 E-value=13 Score=47.70 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=57.3
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccc--cc-CceeEEec
Q 000187 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAA--LK-PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--lk-~~~L~lVe 96 (1888)
..+.|+||+|.+ +....+-++.+|++++..|..+. .|+--..-|-| .|..|+|--++.. |+ |++++||-
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f-~a~~dqlvLIf--aGrILKD~dTL~~~gI~Dg~TvHLVi 85 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRF-GAPPDQLVLIY--AGRILKDDDTLKQYGIQDGHTVHLVI 85 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhc-CCChhHeeeee--cCccccChhhHHHcCCCCCcEEEEEe
Confidence 469999999999 66666668899999999999976 88888888876 9999999766665 33 79999984
No 414
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=61.17 E-value=8.1 Score=35.22 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=41.2
Q ss_pred EEEEEEcCCCCceEEEccCh-hhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccc
Q 000187 26 LDITVNLPDDTRVILKGIST-DRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAA 86 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~-d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~ 86 (1888)
++|+|++++ +.....++. ++|.+|++.|...... .-.+..|.+ +|..|+|...+.+
T Consensus 1 ~~i~vk~~~--~~~~~~v~~~~tv~~lk~~i~~~~~~-~~~~~~L~~--~g~~L~d~~tL~~ 57 (64)
T smart00213 1 IELTVKTLD--GTITLEVKPSDTVSELKEKIAELTGI-PVEQQRLIY--KGKVLEDDRTLAD 57 (64)
T ss_pred CEEEEEECC--ceEEEEECCCCcHHHHHHHHHHHHCC-CHHHEEEEE--CCEECCCCCCHHH
Confidence 479999998 355555644 8999999999987653 455677775 8999988655543
No 415
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.01 E-value=54 Score=33.16 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000187 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+|....+.+.||..+...|++++|++.+...+.... +. +-+.|.+.+-..+.+
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr---~~--------------------~~~~ar~~ll~~f~~---- 70 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDR---DY--------------------EDDAARKRLLDIFEL---- 70 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T---TC--------------------CCCHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---cc--------------------cccHHHHHHHHHHHH----
Confidence 566667889999999999999999988776665311 11 113444444444443
Q ss_pred cCCCChhHHHHHHHHHHHH
Q 000187 1011 CGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy 1029 (1888)
+|..||.+......|+.++
T Consensus 71 lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 71 LGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp H-TT-HHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHh
Confidence 4777887777766666654
No 416
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.79 E-value=68 Score=36.02 Aligned_cols=89 Identities=13% Similarity=0.048 Sum_probs=63.1
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000187 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
......+..+..+-...++.+++...+....-+ .|........-|+++...|+|.+|+.+|+...+.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~----- 73 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER----- 73 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-----
Confidence 345566777777778888999988766544332 3555566666899999999999999999986432
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChH
Q 000187 1054 GPDHIQTAASYHAIAIALSLMEAYP 1078 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdyd 1078 (1888)
.+....+--.+|.++..+||..
T Consensus 74 ---~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 74 ---APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred ---CCCChHHHHHHHHHHHHcCChH
Confidence 2333334445688888888875
No 417
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=60.27 E-value=24 Score=34.23 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=45.5
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCC---cccccc--ccCceeEEe
Q 000187 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKD---AVDVAA--LKPCVLSLT 95 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d---~~ei~~--lk~~~L~lV 95 (1888)
...|.|.+|++..+...--++|+|+||++++..+... -..|.|..-+-...|.| ...|.+ |.++.+-|+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~--~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP--AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC--CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEEEE
Confidence 3579999999998777777889999999999765422 45677764333345544 223333 335555443
No 418
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.27 E-value=2.7e+02 Score=31.95 Aligned_cols=133 Identities=13% Similarity=0.025 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000187 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
.|..+..+.+.++-++|+.-|...-.- -+|. .|. .+....|.+....|+-..|+.+|.++-... ..|.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lekt---g~g~-Ypv--LA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~ 128 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKT---GYGS-YPV--LARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQ 128 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhc---CCCc-chH--HHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcc
Confidence 344455566778888888777653221 1222 233 456778999999999999999998764421 1233
Q ss_pred hH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000187 976 TM--KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047 (1888)
Q Consensus 976 ta--~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALe 1047 (1888)
.. .+...-|.++...|-|+.-... .+.+.++..|....+.--||..-.+.|++.+|..+|.....
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHH-------hhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 33 3344557778888888765433 23345677788888888899999999999999999987654
No 419
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=59.82 E-value=17 Score=48.35 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCcccccC
Q 000187 1684 HFSWQCNGNSNVPEFIPGPFLPGYHPMEFS 1713 (1888)
Q Consensus 1684 ~~~~~~~~~~~~~~f~p~~~~~~~~~~~~~ 1713 (1888)
.|.|-- .+| .|.-=-.+|.+|.-=-|.
T Consensus 628 r~nW~k-I~p--~d~s~~cFWvkv~Edk~e 654 (1102)
T KOG1924|consen 628 RFNWSK-IVP--RDLSENCFWVKVNEDKLE 654 (1102)
T ss_pred cCCccc-cCc--cccCccceeeecchhhcc
Confidence 356853 222 233335689999754443
No 420
>PRK10941 hypothetical protein; Provisional
Probab=59.76 E-value=65 Score=39.09 Aligned_cols=79 Identities=14% Similarity=0.137 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
+.+.+.+|-.+|...++++.|+...+..+.+ .++ ...-+...|.+|.++|.+..|+.-++.-++.+ +
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~---dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF-----DPE---DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 4678899999999999999999999998887 344 44556678999999999999999888877753 5
Q ss_pred CChhHHHHHHHH
Q 000187 1014 SHPNTAATYINV 1025 (1888)
Q Consensus 1014 dhP~~a~a~~NL 1025 (1888)
+.|....+...+
T Consensus 247 ~dp~a~~ik~ql 258 (269)
T PRK10941 247 EDPISEMIRAQI 258 (269)
T ss_pred CchhHHHHHHHH
Confidence 556554443333
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.43 E-value=13 Score=47.22 Aligned_cols=74 Identities=20% Similarity=0.001 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
++..|..++..+|+|..|++.+...---...++..-.+-.+.+++.+|-+|..+++|.+|++.|...|-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567788999999999998765421111112223334456788999999999999999999999998766554
No 422
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=59.30 E-value=1.6e+02 Score=37.04 Aligned_cols=37 Identities=11% Similarity=-0.017 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHH
Q 000187 889 SSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 925 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qG---------d~dEAie~~eeAL~l~eq 925 (1888)
....+..+|++|..+.+.| .+.+|..+|++|-..++-
T Consensus 102 ~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~ 147 (355)
T cd09241 102 KFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEY 147 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 4455677777776665433 377889999998876543
No 423
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=59.30 E-value=98 Score=36.66 Aligned_cols=62 Identities=24% Similarity=0.270 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000187 912 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 912 Aie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
|+.+|.+|+.+ .|.....|+.||.++...|+.-.|+-+|-+++.. ..|. ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 68899999988 4777889999999999999999999999999854 2343 5677788877776
No 424
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.10 E-value=75 Score=35.34 Aligned_cols=91 Identities=19% Similarity=0.076 Sum_probs=65.9
Q ss_pred cccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000187 887 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966 (1888)
Q Consensus 887 ~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E 966 (1888)
.++......+.+.....+..++.+++..++. ++..+ .|.....-..-|+++...|++.+|+..++....-
T Consensus 4 qCs~~iv~gLi~~~~~aL~~~d~~D~e~lLd-ALrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-- 73 (153)
T TIGR02561 4 QCSNRLLGGLIEVLMYALRSADPYDAQAMLD-ALRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS-- 73 (153)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--
Confidence 4455566777777788888999998877664 44442 5666667778899999999999999998876442
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCH
Q 000187 967 RELGLDHPDTMKSYGDLAVFYYRLQHT 993 (1888)
Q Consensus 967 r~lG~Dhp~ta~ay~nLA~ly~~lGdy 993 (1888)
.+....+-..+|.|++.+|+.
T Consensus 74 ------~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 ------AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred ------CCCchHHHHHHHHHHHhcCCh
Confidence 233344555678888888875
No 425
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=58.90 E-value=20 Score=34.80 Aligned_cols=68 Identities=19% Similarity=0.234 Sum_probs=48.2
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000187 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
++.|+|++.......+..-++++|.|+.+.|.... .+.-..--|-+ .|..|+|...|.+.+ |++++|-
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~-~~~~~~qrLi~--~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRPEKIVLKK--WYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEEEe--CCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 36899988876554443345699999999998865 35554555554 899999977666643 6888763
No 426
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.50 E-value=1.6e+02 Score=36.43 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=74.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---------
Q 000187 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC--------- 1011 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~--------- 1011 (1888)
+-+..++..+..+-+.....|+++ ++..+.+|..||.- ..--..+|.+++++|+...+..+
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~ 259 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQ 259 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 334445555666666777778877 46777788777653 23345678888888887654332
Q ss_pred CCCCh--------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChH
Q 000187 1012 GPSHP--------NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078 (1888)
Q Consensus 1012 G~dhP--------~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyd 1078 (1888)
|..+. -...+-..||++..++|+..+|.+.++...+-.. -.....++.||-.++..+..|.
T Consensus 260 ~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p------l~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 260 SPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP------LLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred ccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1234456789999999999999998876554321 1223445555555555554443
No 427
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=58.40 E-value=39 Score=47.21 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=13.7
Q ss_pred cccccccccccccc--cCCCCCcceEEEE
Q 000187 1836 RNRKQTLRIPISLL--SRPYGSQSFKVIY 1862 (1888)
Q Consensus 1836 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 1862 (1888)
||| +---|||+-= +=|-|.+-|.|+=
T Consensus 309 rnq-~~aa~pI~~~pss~~~g~~l~E~~~ 336 (1639)
T KOG0905|consen 309 RNQ-AYAAAPIGEPPSSCPGGQELIEVPS 336 (1639)
T ss_pred hhh-hhhcCcCCCCcccCCCcceeeeccc
Confidence 344 4456776644 4455655555543
No 428
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.23 E-value=54 Score=45.71 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=10.6
Q ss_pred HcCChHHHHHHHHHHHH
Q 000187 905 DKGKLEDAVTYGTKALA 921 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~ 921 (1888)
-.|++.+|++.+.++-.
T Consensus 499 itgd~~~aV~~cl~~~~ 515 (1049)
T KOG0307|consen 499 ITGDFKSAVELCLEANK 515 (1049)
T ss_pred HhccHHHHHHHHHhhhH
Confidence 45777777766655543
No 429
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.14 E-value=5.8e+02 Score=33.89 Aligned_cols=83 Identities=14% Similarity=-0.094 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Q 000187 914 TYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 993 (1888)
Q Consensus 914 e~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdy 993 (1888)
+...+++...... +|.-+.....-|.++...|+.+.|+.+++.++.+..+ .-...++..+|+++..+.+|
T Consensus 250 ~~~~~~Ll~~~~~----~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~ 319 (546)
T KOG3783|consen 250 EECEKALKKYRKR----YPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQY 319 (546)
T ss_pred HHHHHHhHHHHHh----CCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 4444555544443 3444566777888899999988888899888884333 12346788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000187 994 ELALKYVKRALYL 1006 (1888)
Q Consensus 994 eeALey~~kALeL 1006 (1888)
..|-.++.....+
T Consensus 320 ~~aad~~~~L~de 332 (546)
T KOG3783|consen 320 SRAADSFDLLRDE 332 (546)
T ss_pred HHHhhHHHHHHhh
Confidence 9999888877665
No 430
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=57.95 E-value=11 Score=29.12 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 000187 936 GAYSLLAVVLYHTGDFNQATIYQQ 959 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~e 959 (1888)
.++..||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467899999999999999998875
No 431
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=57.56 E-value=4.9e+02 Score=32.80 Aligned_cols=37 Identities=24% Similarity=0.154 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..+.+++.+|......+++.+|+.+++.|...++...
T Consensus 251 ~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~ 287 (346)
T cd09247 251 HEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKL 287 (346)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 3567777888888888999999999999998766544
No 432
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.26 E-value=3.4e+02 Score=37.80 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000187 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
.+-.+|...|+|+.|+++.+..-.. .-..+..-|.+|+..++|..|-++|-+.+.-++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~~-----------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE 420 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPDA-----------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFE 420 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 3456788999999888776544221 124567789999999999999988887765443
No 433
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.61 E-value=98 Score=42.35 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 958 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 958 ~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
|.-|+.+++.. +.+...+..++...|..++..|++++|..+|.+++..
T Consensus 350 y~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 350 YKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 33444444432 3444556678888999999999999999999999864
No 434
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.30 E-value=4.2e+02 Score=40.72 Aligned_cols=110 Identities=14% Similarity=-0.048 Sum_probs=78.2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
...++.+|.++|.+....|+++.|..++-+|.+.. ...++...|..+...|+-..|+.++++.+..+..-
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 45678999999999999999999999998887742 34667788999999999999999999999776432
Q ss_pred -cC--------CCcHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHH
Q 000187 1053 -LG--------PDHIQTAASYHAIAIALSLMEAY--PLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1053 -~G--------~d~~~tA~al~nLA~ay~~lGdy--deAle~lqkALeI~k 1092 (1888)
.+ .+......+...++......|++ ..-+.+|+++.++..
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 11 11112223444555555666664 334556666666543
No 435
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=56.24 E-value=33 Score=41.51 Aligned_cols=53 Identities=28% Similarity=0.536 Sum_probs=26.7
Q ss_pred ccccccCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccC----------CCCCCCCcc
Q 000187 1653 QPLPFMYPPYTQPQGVPTSTFPVTTSAFHHNHFSWQCNGNSNVPEFIP----------GPFLPGYHP 1709 (1888)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~f~p----------~~~~~~~~~ 1709 (1888)
-|.|=..+|-.--|+.+.+-| +-|.|+.|--+.-+-+.+.-|.| .++|||.-|
T Consensus 133 ap~P~~~~Pa~lGqa~~~~~~----~f~~p~nfd~~~lLgq~~p~~ap~~~df~a~~~rQf~Pg~~~ 195 (407)
T PF04625_consen 133 APAPAAFQPAILGQAAPQNFF----SFFNPSNFDASSLLGQALPQMAPPNPDFFAQLQRQFWPGMPP 195 (407)
T ss_pred CCCCCCCCccccccccccccc----cccCccccchhhhhhccCCCCCCCCHHHHHHHHHHhCCCCCC
Confidence 355555555434444443333 23456666655433344333333 468999754
No 436
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=56.18 E-value=38 Score=43.74 Aligned_cols=97 Identities=18% Similarity=0.041 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHH
Q 000187 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT---GDFNQATIYQQKALDINER 967 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l---GdyeeAl~~~eKAL~I~Er 967 (1888)
..++.+++.|.-.+..+....|+..|.+++.. .+....+|.+.|.+++.. |+.-.|+.-...|+.+
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--- 440 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--- 440 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC---
Confidence 34555555666666666778888888888765 345556788888888765 4555666666666654
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000187 968 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRA 1003 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kA 1003 (1888)
++-...+++.|+.++..++++.+|+.+...+
T Consensus 441 -----n~s~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 441 -----NPSIQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred -----ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 4667789999999999999999999765543
No 437
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=55.80 E-value=56 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 1021 TYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.++.+|..+.++|+|++|+.+.+.+|++-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 46779999999999999999999999884
No 438
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=54.95 E-value=4.5e+02 Score=36.16 Aligned_cols=26 Identities=27% Similarity=0.040 Sum_probs=17.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000187 1022 YINVAMMEEGLGNVHVALRYLHKALK 1047 (1888)
Q Consensus 1022 ~~NLA~iy~~lG~yeeAle~LekALe 1047 (1888)
++..|.+|...|++.+|...|+.|+.
T Consensus 938 ~~~aa~aye~~gK~~Ea~gay~sA~m 963 (1243)
T COG5290 938 HISAAKAYEVEGKYIEAHGAYDSALM 963 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777777776654
No 439
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.05 E-value=2.3e+02 Score=35.37 Aligned_cols=29 Identities=7% Similarity=-0.125 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1063 SYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1063 al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+-+.-|..+...|++.++..++.+++-|.
T Consensus 215 v~Yl~~lf~a~n~dv~kg~~~~~e~~gi~ 243 (449)
T COG3014 215 VSYLSGLFYALNGDVNKGLGYLNEAYGIS 243 (449)
T ss_pred HHHHHHHhcccCccHhHHHHHHHHHhccC
Confidence 33444666667778888888877777554
No 440
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=54.01 E-value=2.8e+02 Score=34.83 Aligned_cols=40 Identities=10% Similarity=-0.054 Sum_probs=25.8
Q ss_pred cccHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHh
Q 000187 887 ACSSADGRQLLESSKTALDKGK---------LEDAVTYGTKALAKLVAV 926 (1888)
Q Consensus 887 ~~~s~~A~~LlelG~~~l~qGd---------~dEAie~~eeAL~l~eqi 926 (1888)
......+..+|+.|..+.+.|. +.+|..+|++|-..++.+
T Consensus 113 ~l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l 161 (346)
T cd09240 113 SLGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHL 161 (346)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 3345557777777766544332 577889999988765433
No 441
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.53 E-value=17 Score=45.84 Aligned_cols=66 Identities=11% Similarity=0.196 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCC--cccccccccccccCCCccCCccccccc--c-CceeEE
Q 000187 26 LDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTE--TCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSL 94 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~--Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~l 94 (1888)
++|+||+....... +.| .+++|.||++.|..... .|.-....|-| +|..|+|-..|.+. + +.+|.|
T Consensus 1 MkItVKtl~g~~~~-IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy--~GkiL~Dd~tL~dy~I~e~~~Ivv 72 (378)
T TIGR00601 1 MTLTFKTLQQQKFK-IDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY--SGKILSDDKTVREYKIKEKDFVVV 72 (378)
T ss_pred CEEEEEeCCCCEEE-EEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence 47999998876544 455 45999999999998654 47777778875 99999997766664 3 454443
No 442
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=53.36 E-value=42 Score=33.68 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=37.3
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccc
Q 000187 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLS 70 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~ 70 (1888)
|..+.|.|.||++..+.-.--++++|+||+.++..+... -..|.|.
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~~~~--~~~f~L~ 47 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSLKET--PEKFQIV 47 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhCCCC--CCcEEEe
Confidence 568899999999999888888999999999999866542 2455554
No 443
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.19 E-value=3.5e+02 Score=38.68 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=29.2
Q ss_pred cccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 887 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAK 922 (1888)
Q Consensus 887 ~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l 922 (1888)
.+.......-+.+|..|+..|...+|+.+|.+|+.-
T Consensus 914 wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg 949 (1480)
T KOG4521|consen 914 WCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSG 949 (1480)
T ss_pred hhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhc
Confidence 555555666677889999999999999999999863
No 444
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=53.03 E-value=7.1e+02 Score=33.90 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=13.9
Q ss_pred HHHHHcCChHHHHHHHHH
Q 000187 901 KTALDKGKLEDAVTYGTK 918 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~ee 918 (1888)
.+++-.|+|+.|++++.+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 566778999999998877
No 445
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=52.82 E-value=4e+02 Score=38.29 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=28.0
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000187 1031 GLGNVHVALRYLHKALKCNQRLL--GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1031 ~lG~yeeAle~LekALei~ek~~--G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
+.|-|.+|+.+|.--.+..+..+ -.+|...-.-+..-|.+|...|+.++|+..|+.+.
T Consensus 920 kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 920 KHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred hcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhc
Confidence 45566666666543333222211 01111111222344566777777777777766543
No 446
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=52.73 E-value=13 Score=36.42 Aligned_cols=51 Identities=14% Similarity=0.201 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHhhhcC--CcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 44 STDRIIDVRRLLSVNT--ETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 44 s~d~v~dvrq~L~~~~--~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++++|.+|++.|.+.. ..|.--.+-|-| .|..|+|-..|++.+ |++|+||-
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy--~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIH--CGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEe--CCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4599999999999984 356567778886 999999988888753 79999883
No 447
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.54 E-value=2.7e+02 Score=36.56 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000187 1062 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1062 ~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
.-++.+|..|...++|.+|+.+|.+|+..+++.++
T Consensus 423 fRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~ 457 (593)
T KOG2460|consen 423 FRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33567899999999999999999999877765543
No 448
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=52.48 E-value=2.7e+02 Score=35.22 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
..+.+++..|..+...+++.+|+.+++.|...+
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~ 278 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLY 278 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHH
Confidence 345666666777777777777777777776544
No 449
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=52.31 E-value=2.3e+02 Score=35.78 Aligned_cols=38 Identities=11% Similarity=-0.081 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHHHHHHH-------c-----CChHHHHHHHHHHHHHHH
Q 000187 887 ACSSADGRQLLESSKTALD-------K-----GKLEDAVTYGTKALAKLV 924 (1888)
Q Consensus 887 ~~~s~~A~~LlelG~~~l~-------q-----Gd~dEAie~~eeAL~l~e 924 (1888)
......+..+|++|..+.+ . ....+|..+|++|-..+.
T Consensus 103 sl~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~ 152 (353)
T cd09243 103 DAIFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQ 152 (353)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3344556667777766632 1 125677788888876543
No 450
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=51.95 E-value=3.7e+02 Score=30.52 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=70.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000187 943 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATY 1022 (1888)
Q Consensus 943 ~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~ 1022 (1888)
..-..-|.|.+|..++.+.++.- ...+...+|..+++|+....+-..-..--.+..+.+.-...+..|-++.+-
T Consensus 101 a~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAt 174 (220)
T PF10858_consen 101 AIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATAT 174 (220)
T ss_pred HHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHH
Confidence 34456789999999999988863 346778899999999988765433333333333333333456677777666
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000187 1023 INVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1023 ~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...|..-...|.-.+|+++++..+..
T Consensus 175 I~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 175 IIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 66677777888899999999877754
No 451
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=50.87 E-value=2.8e+02 Score=34.96 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000187 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
.+.+++..|..+...+++.+|+.+++.|...++
T Consensus 243 ~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~ 275 (348)
T cd09242 243 KSLAAYYHALALEAAGKYGEAIAYLTQAESILK 275 (348)
T ss_pred HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHH
Confidence 455566666666777788888888887776544
No 452
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.27 E-value=1.9e+02 Score=35.33 Aligned_cols=134 Identities=17% Similarity=0.125 Sum_probs=80.9
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 000187 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 981 (1888)
Q Consensus 902 ~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~ 981 (1888)
..+..|++-+|.+.|+..+..+... ..|.......+.=|.+++..++..-|..+.-..++.+++. +..+......
T Consensus 15 a~~~~~d~Yeahqm~RTl~fR~~~~--K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka---~~ad~~~~~a 89 (312)
T KOG3024|consen 15 ASIELGDYYEAHQMYRTLVFRYTRQ--KAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA---EVADSLLKVA 89 (312)
T ss_pred hccccccHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH---HhhHhHHHHH
Confidence 3445567777877777766554433 2344444555566677777777777777666666666552 1112222234
Q ss_pred HHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000187 982 DLAVFYYRLQHTELALK-YVKRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHK 1044 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALe-y~~kALeL~~ki~G~---dhP~~a~a~~NLA~iy~~lG~yeeAle~Lek 1044 (1888)
||+.+....+.-+..+. +.++|++- ...+|. .||. .+..+|..+...+++.+|..+|-.
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikW-S~~~~~~k~G~p~---lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKW-SKEFGEGKYGHPE---LHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHH-HhhcCCCCCCCHH---HHHHHHHHHHhcccHHHHHhHhhh
Confidence 66666666665555554 44556554 443322 2554 456689999999999999988853
No 453
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=50.09 E-value=46 Score=32.62 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=39.6
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCC
Q 000187 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKD 80 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d 80 (1888)
...|.|.||++..+...--++|+|.||++++.... ......|.|..-+-...|.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~-~~~~~~f~L~t~~Prk~l~~ 58 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAAL-TDGNDPFTLNSPFPRRTFTK 58 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcc-cCCCCCEEEEeCCCCcCCcc
Confidence 46799999999998887778899999999994322 22335677765444445554
No 454
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=49.65 E-value=2.9e+02 Score=36.09 Aligned_cols=82 Identities=23% Similarity=0.204 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
...|..||.+...+|+++-|...|+++-. +..|..+|...|+.+.=.++...|.. . |
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~~L~lLy~~~g~~~~L~kl~~~a~~----~-~-- 403 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD----------------FSGLLLLYSSTGDREKLSKLAKIAEE----R-G-- 403 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HHHHHHHHHHCT-HHHHHHHHHHHHH----T-T--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------ccccHHHHHHhCCHHHHHHHHHHHHH----c-c--
Confidence 45899999999999999999999988744 34577788888886554443333322 1 1
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000187 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
.... .-.++..+|+.++.++.|.++
T Consensus 404 ~~n~------af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 DINI------AFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHH------HHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHH------HHHHHHHcCCHHHHHHHHHHc
Confidence 1111 122344557777777666554
No 455
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.49 E-value=36 Score=42.38 Aligned_cols=66 Identities=12% Similarity=-0.039 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
.+.-+...|.-.+.++++++|...|..|..++..+||..|-.+...++..|..++.+++++.+.-.
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344566788899999999999999999999999999999999999999999999998887765543
No 456
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.43 E-value=37 Score=41.28 Aligned_cols=65 Identities=23% Similarity=0.166 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
.|...+..|.-....|+.++|..+|+.|+++ .|....++..+|.....-.+.-+|-.+|-+||.+
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3555666677778899999999999999988 3444457888898888889999999999999887
No 457
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=49.30 E-value=8.5e+02 Score=35.11 Aligned_cols=21 Identities=10% Similarity=-0.178 Sum_probs=10.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHH
Q 000187 986 FYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 986 ly~~lGdyeeALey~~kALeL 1006 (1888)
++...++...|..+...|...
T Consensus 1534 L~~T~~di~ra~~L~s~A~~a 1554 (1758)
T KOG0994|consen 1534 LSRTKGDIARAENLQSEAERA 1554 (1758)
T ss_pred HHhhhhhHHHHHHHHHHHHHH
Confidence 344455555565555555443
No 458
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=48.80 E-value=4.8e+02 Score=34.77 Aligned_cols=71 Identities=14% Similarity=0.059 Sum_probs=55.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc---CC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000187 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLL---GP-DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1022 ~~NLA~iy~~lG~yeeAle~LekALei~ek~~---G~-d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
.++++.-+...|.-.++++++.-+..+.+... .. --+..+..|..+..+|...|.+.+|..+.++|+.-..
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~ 228 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKID 228 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 45678888899999999999988776665432 11 1245678888899999999999999999999886443
No 459
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=48.07 E-value=2.7e+02 Score=35.55 Aligned_cols=109 Identities=17% Similarity=0.021 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH--HcCCHHHHHHHHHHHH-------------
Q 000187 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY--RLQHTELALKYVKRAL------------- 1004 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~--~lGdyeeALey~~kAL------------- 1004 (1888)
..+..++..++|..|...+.+++.- .+..+.......|..|+..|. ..-++++|.+++++.+
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r---~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~ 211 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR---LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHD 211 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc---ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhh
Confidence 4566788899999999999888753 222222334556666666554 5567799999998211
Q ss_pred ------HHHHHhcC------------CCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 1005 ------YLLHLTCG------------PSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1005 ------eL~~ki~G------------~dhP~--~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.....+.+ ..++. .+.-+..-|..-..+|+|+.|+..+-+++++..+
T Consensus 212 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 212 ELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred HHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 00000000 01121 1111222234444789999999988888887644
No 460
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=47.87 E-value=68 Score=35.15 Aligned_cols=69 Identities=29% Similarity=0.264 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD-TMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~-ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
...+.+++|+++....+.+. .++.+.+.+.++..+||. .-.+.+.||.-+++.++|++|+.|....++.
T Consensus 31 s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 35678889999888766543 355666666665434444 4467788999999999999999999988874
No 461
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.41 E-value=1.7e+03 Score=36.24 Aligned_cols=40 Identities=5% Similarity=0.005 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCC
Q 000187 1141 SVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDN 1180 (1888)
Q Consensus 1141 svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~ 1180 (1888)
..++.+..-|....+.|++++|-+.|..|+++.+.+..+|
T Consensus 2810 q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW 2849 (3550)
T KOG0889|consen 2810 QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAW 2849 (3550)
T ss_pred HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHH
Confidence 4567788888888999999999999999999987765433
No 462
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=47.08 E-value=24 Score=27.20 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVK 1001 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~ 1001 (1888)
.++.+||.++..+|++++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357889999999999999998875
No 463
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=46.94 E-value=4.3e+02 Score=32.45 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
...++..++..+...|+++.++..+++-+.+ +|..-..|..|=..|...|+...|+..|++.-.+...-.|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4578899999999999999999988877765 56667788888889999999999999999988876555565
Q ss_pred CCh
Q 000187 1014 SHP 1016 (1888)
Q Consensus 1014 dhP 1016 (1888)
+..
T Consensus 224 ~P~ 226 (280)
T COG3629 224 DPA 226 (280)
T ss_pred Ccc
Confidence 543
No 464
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=46.08 E-value=39 Score=34.16 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=27.7
Q ss_pred cccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000187 887 ACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAK 922 (1888)
Q Consensus 887 ~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l 922 (1888)
.....+....+.+|..++..|++++|++.+.+++..
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 334455677888999999999999999999888753
No 465
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.73 E-value=2.1e+02 Score=38.07 Aligned_cols=48 Identities=19% Similarity=0.054 Sum_probs=35.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 946 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 946 ~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
.++|+++.|..+..++- ...-|..||.+....+++..|.+++.+|..+
T Consensus 648 l~lgrl~iA~~la~e~~-------------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN-------------SEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHHhhc-------------chHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 45566666665554432 2344778999999999999999999999875
No 466
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=44.43 E-value=95 Score=37.30 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=18.9
Q ss_pred cCCCCCCCCcccCCCCcccccCCC
Q 000187 1600 TLPPGPGAVTAVAPWPVNMTLHPR 1623 (1888)
Q Consensus 1600 ~~~~~~~~~~~~~~~p~n~~~~~~ 1623 (1888)
+-| |+..+||+.||| +|++|||
T Consensus 203 ~RP-G~~~~PgmtprP-G~~~~Pg 224 (279)
T PF07271_consen 203 QRP-GFTPHPGMTPRP-GMTPHPG 224 (279)
T ss_pred CCC-CCCCCCCCCCCC-CCCCCCC
Confidence 344 899999999999 8999988
No 467
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=43.27 E-value=1.8e+02 Score=36.69 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
..+.+++.+|..+...+++.+|+.+++.|...++..
T Consensus 237 ~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a 272 (377)
T PF03097_consen 237 YRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEA 272 (377)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 355666777777778888888888888887766554
No 468
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=43.20 E-value=1.3e+03 Score=33.52 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=9.0
Q ss_pred HCCCHHHHHHHHHHHHHH
Q 000187 1031 GLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1031 ~lG~yeeAle~LekALei 1048 (1888)
..++...|..+..+|.+.
T Consensus 1537 T~~di~ra~~L~s~A~~a 1554 (1758)
T KOG0994|consen 1537 TKGDIARAENLQSEAERA 1554 (1758)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 345555555555554443
No 469
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=42.57 E-value=44 Score=41.53 Aligned_cols=118 Identities=15% Similarity=0.091 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC------CC-----ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 982 DLAVFYYRLQHTELALKYVKRALYLLHLTCG------PS-----HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALey~~kALeL~~ki~G------~d-----hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+.+.-.+..++|+.|..-|.+++......-. .+ .......+.|++.+-..++.+..|+.....+++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~--- 303 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR--- 303 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc---
Confidence 4566678888899998888888876652100 01 112245677888898999999998887777665
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000187 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 1112 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L 1112 (1888)
.......+++..++.|..+.++++|++.++.|.+. .+++......+.+....
T Consensus 304 -----~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~-----~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 304 -----DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK-----APNDKAIEEELENVRQK 355 (372)
T ss_pred -----cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc-----CcchHHHHHHHHHhhhH
Confidence 23456678899999999999999999999988743 46666555554444333
No 470
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=41.65 E-value=2.5e+02 Score=35.47 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHH
Q 000187 935 AGAYSLLAVVLYHTG---------DFNQATIYQQKALDINE 966 (1888)
Q Consensus 935 A~ay~~LA~ly~~lG---------dyeeAl~~~eKAL~I~E 966 (1888)
+.+++|+|.+|.++| ....|..+|++|--+++
T Consensus 106 asVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~ 146 (350)
T cd09244 106 ASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFN 146 (350)
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 344555555554433 25677777777765543
No 471
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=41.26 E-value=1.6e+02 Score=32.80 Aligned_cols=87 Identities=15% Similarity=0.088 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
....+..+...-....+.+++...+....-+ .|.......--|+++...|+|.+|+..|++..+- .
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~ 74 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------A 74 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc------C
Confidence 3445555555566688888887665543332 3555555666899999999999999999876543 1
Q ss_pred CcHHHHHHHHHHHHHHHHcCChH
Q 000187 1056 DHIQTAASYHAIAIALSLMEAYP 1078 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdyd 1078 (1888)
.+ ...+.-.+|.++..+||..
T Consensus 75 ~~--~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 GA--PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CC--chHHHHHHHHHHHhcCChH
Confidence 12 2333344688888888865
No 472
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=40.17 E-value=4.8e+02 Score=34.95 Aligned_cols=110 Identities=18% Similarity=0.121 Sum_probs=75.1
Q ss_pred cCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 000187 927 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKR-ALY 1005 (1888)
Q Consensus 927 ~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~k-ALe 1005 (1888)
++..++.+..++. ++..+..+++...|......++.. ++..+.++.+||......|..-.++.-+.+ +..
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4667787766666 888888899988887777777664 567788899999888887776666544433 443
Q ss_pred HHHHhcCCCChhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000187 1006 LLHLTCGPSHPNT---AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 1006 L~~ki~G~dhP~~---a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+. ++.... ...++.++..+..+|+..++...++++.++..
T Consensus 131 ~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 131 LS-----PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred cC-----cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 21 111111 11233378888888998888888888887753
No 473
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=40.13 E-value=2.1e+02 Score=28.43 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000187 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
.+..|...|.-+-..|++.+|+.+|+.|++++.++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 345566777788899999999999999999887753
No 474
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=39.73 E-value=7.4e+02 Score=32.14 Aligned_cols=34 Identities=9% Similarity=-0.021 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000187 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
..+.+++.+|......|++.+|+.+++.|...+.
T Consensus 294 ~~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~ 327 (413)
T cd09245 294 ARALACKFLGIDAGENGKVGEAIGWLRAAKKELE 327 (413)
T ss_pred HHHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHH
Confidence 3466777777777788888899999888887543
No 475
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=39.39 E-value=5.8e+02 Score=32.15 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000187 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.+.+++.+|..+...+++-+|+.+|+.|....+.
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 285 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKK 285 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3556677777777888888888888888876543
No 476
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=39.15 E-value=3.1e+02 Score=31.09 Aligned_cols=102 Identities=14% Similarity=0.002 Sum_probs=68.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000187 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
++-..-+..|.|.+|.+++.+.++.- ...+...+|..+++|.....+-..-+.-..+.+...--...+..|..+
T Consensus 98 eqva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWa 171 (220)
T PF10858_consen 98 EQVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWA 171 (220)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHH
Confidence 33345567789999999999998862 345667888888888887765433333333333332222234456666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
.+-..-|..-...|.-.+|+++++..+.
T Consensus 172 tAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 172 TATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 6666667777888999999998887665
No 477
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=38.64 E-value=99 Score=40.26 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000187 951 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLLHLTCGPSHPNTAATYINVAM 1027 (1888)
Q Consensus 951 yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd---yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~ 1027 (1888)
...|+..|.++++. .+.....|.|.|.+++..+- .-.|+.-...|+.+ +|....+++.|+.
T Consensus 390 ~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~la~ 453 (758)
T KOG1310|consen 390 VSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHHHH
Confidence 45667777777664 34556677777777776643 34444444455443 4677888999999
Q ss_pred HHHHCCCHHHHHHHHHHH
Q 000187 1028 MEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 1028 iy~~lG~yeeAle~LekA 1045 (1888)
++..++++.+|+.+...+
T Consensus 454 aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 454 ALNELTRYLEALSCHWAL 471 (758)
T ss_pred HHHHHhhHHHhhhhHHHH
Confidence 999999999999876543
No 478
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=38.48 E-value=1.3e+02 Score=37.07 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccccccCCC
Q 000187 1629 PTVNPMCSSPHQPYPSPPSTPNMMQPLPFMYPP 1661 (1888)
Q Consensus 1629 ~~~~p~~~sp~~~~~~~~~~~~~~~~~~~~~~~ 1661 (1888)
|.-.||-.|||-+-|+|-..|.-.|==||.+||
T Consensus 290 ppRP~m~l~phl~gppPga~pPaph~NpaffpP 322 (498)
T KOG4849|consen 290 PPRPMMQLSPHLMGPPPGAGPPAPHNNPAFFPP 322 (498)
T ss_pred CCCcccccCcccCCCCCCCCCCCcccCcccCCC
Confidence 555667778887776655544444444566666
No 479
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.20 E-value=1.1e+03 Score=31.35 Aligned_cols=33 Identities=15% Similarity=-0.027 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000187 1145 LLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1145 lL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
..++|+..|..+++|.+|+..|.+|....+...
T Consensus 424 RC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~ 456 (593)
T KOG2460|consen 424 RCFYIAVSYQAKKKYSEALALYVRAYSYLQEVN 456 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999998776654
No 480
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.93 E-value=2.3e+02 Score=30.42 Aligned_cols=86 Identities=12% Similarity=0.035 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 000187 991 QHTELALKYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 1069 (1888)
Q Consensus 991 GdyeeALey~~kALeL~~ki-~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ 1069 (1888)
+.-..-...+++++..+... .-.+++..+.++...|... . .+.+.|..... +-.|.. .+..|...|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~----~--~~~~if~~l~~---~~IG~~---~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS----S--DPREIFKFLYS---KGIGTK---LALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB----S--HHHHHHHHHHH---HTTSTT---BHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc----c--CHHHHHHHHHH---cCccHH---HHHHHHHHHH
Confidence 44555567888888776431 1134555666655554432 2 67777765443 234443 5667777899
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 000187 1070 ALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1070 ay~~lGdydeAle~lqkAL 1088 (1888)
.+...|++++|.+.|+.++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999998764
No 481
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=37.51 E-value=68 Score=39.13 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=47.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000187 942 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
|.-.+..|+.++|..+++.|+.+ .|....++..+|.+....++.-+|-.||-+||.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 33445679999999999999998 3455567788899988889999999999999986
No 482
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=37.14 E-value=1.2e+03 Score=31.44 Aligned_cols=173 Identities=14% Similarity=-0.013 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000187 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..........|+++...-+|++++--+.. .-..|...+......|+.+-|-..++.+.++.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--------Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~------- 361 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCAL--------YDEFWIKYARWMESSGDVSLANNVLARACKIH------- 361 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--------hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-------
Confidence 344444445667789999999999998865432 23567777777777899999988888888875
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000187 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+.+..+...-|.+....|++..|...|++...-+ |....+-..-+.+..++|+.+.+.. +...+... .
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~--~ 430 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY-KNELYSSI--Y 430 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh--c
Confidence 34455566667888899999999999998876531 4455554455666778888887775 33333222 1
Q ss_pred cCCCcH-HHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHH
Q 000187 1053 LGPDHI-QTAASYHAIAIAL-SLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1053 ~G~d~~-~tA~al~nLA~ay-~~lGdydeAle~lqkALeI~ 1091 (1888)
-|..+. .+...+...+... ...++.+.|...+.++.++.
T Consensus 431 ~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 431 EGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred ccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 223332 3345555666554 45678888988888888663
No 483
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=36.84 E-value=33 Score=33.27 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=41.5
Q ss_pred Ecc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000187 41 KGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 41 ~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
..+ ++++|.+|++.|.... .+.-....|.| +|..|+|-..+++.. |+.|.|+-
T Consensus 12 l~v~~~~TV~~lK~~i~~~~-gip~~~q~L~~--~G~~L~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 12 FTLQLSDPVSVLKVKIHEET-GMPAGKQKLQY--EGIFIKDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred EEECCCCcHHHHHHHHHHHH-CCCHHHEEEEE--CCEEcCCCCcHHHcCCCCCCEEEEEE
Confidence 344 4589999999998865 47888888886 999999987777753 68888874
No 484
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.11 E-value=9.7e+02 Score=30.31 Aligned_cols=71 Identities=8% Similarity=-0.074 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-------------------------cCCCcHHHHHHHHHHHHHHHHcC
Q 000187 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRL-------------------------LGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~-------------------------~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
.-.+-|.++...++|.++...|..|-..++.. +++..-....+.+.+|.-|....
T Consensus 60 ~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~n 139 (449)
T COG3014 60 WDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLN 139 (449)
T ss_pred HhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhc
Confidence 33456888888889888888777665544322 12222233445556778888888
Q ss_pred ChHHHHHHHHHHHHHH
Q 000187 1076 AYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1076 dydeAle~lqkALeI~ 1091 (1888)
|++.|.--+++|.+.-
T Consensus 140 D~~~ArVEfnRan~rQ 155 (449)
T COG3014 140 DSAKARVEFNRANERQ 155 (449)
T ss_pred chhhhHHHHHHHHHHH
Confidence 9998888888777543
No 485
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=35.97 E-value=35 Score=32.41 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=46.9
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000187 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
++|+|+..+...+.++.-.++++..+.+..........-+.|-|.+ +|.+|++...+.++. |..|.|+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f--dG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF--DGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE--TTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE--CCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 5688888766645455446688888888888766544447888885 999999977777653 5666554
No 486
>PRK14707 hypothetical protein; Provisional
Probab=35.80 E-value=9.4e+02 Score=37.14 Aligned_cols=195 Identities=11% Similarity=-0.054 Sum_probs=110.1
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh--H
Q 000187 902 TALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG--AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT--M 977 (1888)
Q Consensus 902 ~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~--ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t--a 977 (1888)
.+.-..++.++-.+-.-++.+...+- ..+.... --..++.++..+.++.+.-..-.-+..+..++.. ++.. .
T Consensus 1008 ~LNALSKWPd~~~Cr~AA~~LA~rLa--~ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~--d~~Lr~A 1083 (2710)
T PRK14707 1008 ALNALSKWLQMPVCAATVEALAARLS--NDPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSD--DLVLRNA 1083 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHhc--cCHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhc--cHHHHHh
Confidence 33334444443333344444444442 2222222 2245666777777776655555555566655432 2332 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000187 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
..-..+|.++..+-+|.+.-.+-.-++.+...+....++........++.++..+.+|...-.+=..+..+..++.....
T Consensus 1084 l~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d~~ 1163 (2710)
T PRK14707 1084 LDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANAPG 1163 (2710)
T ss_pred hchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccchh
Confidence 33346888888888888888888888888877755555555555556677777666666555554455555555543333
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCH
Q 000187 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDL 1100 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~ 1100 (1888)
...+..-..+|..+..+.++-+.-.+.+-++.+........++
T Consensus 1164 Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~rlG~a~~P 1206 (2710)
T PRK14707 1164 LRNALSAQGVAIALNALSKCLARPVCRSAFVLLAERAGSAELP 1206 (2710)
T ss_pred hhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHHhhcCCCCC
Confidence 4344445566777777777766655555555555444333433
No 487
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=35.69 E-value=89 Score=39.31 Aligned_cols=8 Identities=13% Similarity=-0.002 Sum_probs=6.1
Q ss_pred CCCCCCcc
Q 000187 1702 PFLPGYHP 1709 (1888)
Q Consensus 1702 ~~~~~~~~ 1709 (1888)
+.||+-|.
T Consensus 450 q~~pa~~a 457 (462)
T KOG2199|consen 450 QQPPAPTA 457 (462)
T ss_pred CCCCCCCC
Confidence 77888775
No 488
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.54 E-value=2.7e+02 Score=38.52 Aligned_cols=36 Identities=39% Similarity=0.548 Sum_probs=18.4
Q ss_pred CCCCccccCCCCCCCCCC-CCCCCCCCCCC-CCCcccc
Q 000187 1621 HPRPATVLPTVNPMCSSP-HQPYPSPPSTP-NMMQPLP 1656 (1888)
Q Consensus 1621 ~~~~~~~~~~~~p~~~sp-~~~~~~~~~~~-~~~~~~~ 1656 (1888)
-+||+.++|...+|.+-| |-+.++|-..| -+|+++|
T Consensus 164 p~~p~~~~p~~p~~~s~p~~~~~~~~a~pp~a~~~~p~ 201 (1007)
T KOG1984|consen 164 PPGPAMVPPSGPLMVSQPARASGMPPAFPPGAQMQPPP 201 (1007)
T ss_pred CCCCccCCCCCCcCCCCCCcCCCCCCCCCCccCCCCCC
Confidence 456777777777775555 22333322222 3455555
No 489
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=35.22 E-value=62 Score=34.22 Aligned_cols=71 Identities=11% Similarity=0.124 Sum_probs=53.3
Q ss_pred eEEEEEEEcCCCCceEEEccC-hhhHHHHHHHhhhcCC-c-----ccccccccccccCCCccCCcccccccc--------
Q 000187 24 VVLDITVNLPDDTRVILKGIS-TDRIIDVRRLLSVNTE-T-----CSITNFSLSHEIRGPRLKDAVDVAALK-------- 88 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is-~d~v~dvrq~L~~~~~-T-----c~~T~fsL~~~~~G~~L~d~~ei~~lk-------- 88 (1888)
..+.|..-|++++.+--..++ +|+|.+|.+.|...-. - |.-..-.|-| .|..|+|-..|.+.+
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy--sGKiLeD~~TL~d~~~p~g~~~~ 80 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS--AGKILENSKTVGECRSPVGDIAG 80 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe--CCeecCCCCcHHHhCCcccccCC
Confidence 467899999999988877774 5999999999984332 2 4455556664 999999987777766
Q ss_pred -CceeEEec
Q 000187 89 -PCVLSLTE 96 (1888)
Q Consensus 89 -~~~L~lVe 96 (1888)
.++++||-
T Consensus 81 ~~~TmHvvl 89 (113)
T cd01814 81 GVITMHVVV 89 (113)
T ss_pred CceEEEEEe
Confidence 26777763
No 490
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=35.10 E-value=3.4e+02 Score=35.18 Aligned_cols=125 Identities=18% Similarity=0.110 Sum_probs=71.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
...+..|++-.|-.....+|..+.+ .|. .....+.+...+|+|+.|......+-.+ +|..+ .+.
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~-----~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~----~~s~~----~~~ 360 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQ-----DPV---LIQLRSVIFSHLGYYEQAYQDISDVEKI----IGTTD----STL 360 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCC-----Cch---hhHHHHHHHHHhhhHHHHHHHhhchhhh----hcCCc----hHH
Confidence 3456789998888888888776322 333 3345688899999999998876555333 23222 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000187 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.-+-.-.+.+|++++|+....-.+. .. -..|++..+ .|.....+|-+++|..++++.+.+.
T Consensus 361 ~~~~r~~~~l~r~~~a~s~a~~~l~--~e---ie~~ei~~i---aa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 361 RCRLRSLHGLARWREALSTAEMMLS--NE---IEDEEVLTV---AAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhhhchhhHHHHHHHHHHHhc--cc---cCChhheee---ecccHHHHhHHHHHHHHHHHHhccC
Confidence 2223345667788887655433321 01 123333222 2333345566677777777766654
No 491
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=34.85 E-value=6.6e+02 Score=31.64 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=27.8
Q ss_pred hcccHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHHh
Q 000187 886 AACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVAV 926 (1888)
Q Consensus 886 ~~~~s~~A~~LlelG~~~l~qG---------d~dEAie~~eeAL~l~eqi 926 (1888)
.......+-.||+.|..+...| .+.+|..+|++|-.++..+
T Consensus 100 ~~~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l 149 (377)
T PF03097_consen 100 SSLAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYL 149 (377)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 3345566777888887665543 3567888999888765543
No 492
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.36 E-value=5.4e+02 Score=36.34 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALA 921 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~ 921 (1888)
....+..++..|...|+.++|++++.+...
T Consensus 503 k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 503 KSKKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred hcccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 355667777888999999999999888776
No 493
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=33.92 E-value=3e+02 Score=37.59 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhhccc
Q 000187 759 SLCIHEMIVRAFKHIIQAVISAVGNTQRMAVSIAAALNLMLGVH 802 (1888)
Q Consensus 759 ~l~~~EMIaRAaKHIlRa~lr~l~~~~~la~AIsHfLNcLLG~~ 802 (1888)
.|-++.=|+|+.+|-++..--. -.......++++++-|+-+.
T Consensus 62 gLYVIDSIVRqsrhq~~~~kd~--F~prf~~n~~~tf~~L~~c~ 103 (894)
T KOG0132|consen 62 GLYVIDSIVRQSRHQFGKEKDV--FGPRFSKNFTGTFQNLYECP 103 (894)
T ss_pred eeEEehHHHHHHHHhhcccccc--cCCccchhHHHHHHHHHhcC
Confidence 3667777889999988843322 23456667777777776443
No 494
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.72 E-value=5.1e+02 Score=31.87 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=34.9
Q ss_pred HHHHHHHHCCCHHHH-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000187 1024 NVAMMEEGLGNVHVA-LRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1024 NLA~iy~~lG~yeeA-le~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
|++.++...+.-+.. ..+.+.|++-..+ +|.........+..||..+..-++..+|..||-
T Consensus 90 nl~~ll~e~~~~eper~~~v~raikWS~~-~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFl 151 (312)
T KOG3024|consen 90 NLAELLGEADPSEPERKTFVRRAIKWSKE-FGEGKYGHPELHALLADKLWTEDNVEEARRHFL 151 (312)
T ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhh
Confidence 344444444433333 3444555554433 233333445667778888888888888888874
No 495
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=33.67 E-value=1.1e+02 Score=30.07 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=38.1
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccC
Q 000187 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLK 79 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~ 79 (1888)
...|.|.||++..+...--++|+|.||++++..+. +.-..|.|..-+-...+.
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~--~~~~~f~L~t~fPrk~~~ 56 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNT--GNGGPFTLMTPFPRKVFT 56 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcC--CCCCCEEEEeCCCCeECC
Confidence 45799999999887777678899999999998654 222567776433334454
No 496
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.64 E-value=3.7e+02 Score=26.67 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000187 1063 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1063 al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
.+...|.-+-..|+|++|+.+|++|++.+...
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34445666667899999999999999999873
No 497
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=33.20 E-value=79 Score=28.02 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 000187 897 LESSKTALDKGKLEDAVTYGTKALA 921 (1888)
Q Consensus 897 lelG~~~l~qGd~dEAie~~eeAL~ 921 (1888)
+.+|+.|+..|+++.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678999999999999999999885
No 498
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=33.14 E-value=2.2e+02 Score=28.17 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000187 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA 925 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eq 925 (1888)
.|..+...|..+=..|+|++|+.+|.+|++.+..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4667777888888999999999999999998766
No 499
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.02 E-value=3.2e+02 Score=25.94 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000187 1063 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1063 al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
.+...|.-+-..|++++|+.+|.+|++.+...+.
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3444566667789999999999999998877654
No 500
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=32.76 E-value=63 Score=38.22 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=49.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000187 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
......|+.+.|.++|.+|+.+ -|+.+..|..+|......|+++.|...|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~l--------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL--------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc--------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 3456789999999999999987 4777889999999999999999999999998886
Done!