BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000190
(1888 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain 1
Length = 311
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 72/163 (44%)
Query: 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965
+G+ E AV +AL L G H A ++LA+V + A AL I
Sbjct: 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99
Query: 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025
E+ LG DHP + +LAV Y + + A KRAL + G HP+ A N+
Sbjct: 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159
Query: 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068
A++ + G Y +AL+ Q LGPD A + + +A
Sbjct: 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 4/184 (2%)
Query: 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV 1000
L + G + A ++AL+ E+ G DHPD LA+ Y + A +
Sbjct: 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLL 92
Query: 1001 KRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQT 1060
AL + T G HP AAT N+A++ G A +AL+ +++LG DH
Sbjct: 93 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152
Query: 1061 AASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD---LRTQDAAAWLEYFESKAF 1117
A + +A+ Y + Q L+I + KLGPDD +T++ A Y + F
Sbjct: 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASC-YLKQGKF 211
Query: 1118 EQQE 1121
+Q E
Sbjct: 212 KQAE 215
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 56/122 (45%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
D+ K +DA ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
E+ LG DHPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200
Query: 1025 VA 1026
+A
Sbjct: 201 LA 202
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965
+GK ++A +AL V G H A + LA++ + G + + Y Q+AL+I
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 966 ERELGLDHPDTMKSYGDLAVFYYR 989
+ +LG D P+ K+ +LA Y +
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCYLK 207
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%)
Query: 912 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971
AV +AL L G H A ++LA+V + +A AL I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031
DHP + +LAV Y + + A KRAL + G HP+ A N+A++ +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQN 139
Query: 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068
G Y +AL+ LGPD A + + +A
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
D+ K ++A ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
E+ LG HPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 115 REKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 1025 VA 1026
+A
Sbjct: 175 LA 176
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 1018
++AL+ E+ G DHPD LA+ Y + A + AL + T G HP
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078
AAT N+A++ G A +AL+ +++LG H A +A+
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE 144
Query: 1079 LSVQHEQTTLQILRAKLGPDD-----------------LRTQDAAAWLEYFESKAFEQQE 1121
+ + L+I +LGPDD + QDA + ++A E++
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 1122 AARNGTRKP 1130
+ NG KP
Sbjct: 205 GSVNGDNKP 213
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 68/157 (43%)
Query: 912 AVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971
AV +AL L G H A ++LA+V + +A AL I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031
DHP + +LAV Y + + A KRAL + G HP+ A N+A++ +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139
Query: 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068
G Y +AL+ LGPD A + + +A
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%)
Query: 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964
D+ K ++A ALA G H A + LAV+ G + +A ++AL+I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024
E+ LG HPD K +LA+ E Y +RAL + GP PN A T N
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 1025 VA 1026
+A
Sbjct: 175 LA 176
Score = 51.6 bits (122), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 17/189 (8%)
Query: 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT 1018
++AL+ E+ G DHPD LA+ Y + A + AL + T G HP
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078
AAT N+A++ G A +AL+ +++LG H A + +A+
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 1079 LSVQHEQTTLQILRAKLGPDD-----------------LRTQDAAAWLEYFESKAFEQQE 1121
+ + L+I +LGPDD + QDA + ++A E++
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204
Query: 1122 AARNGTRKP 1130
+ NG KP
Sbjct: 205 GSVNGDNKP 213
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 24/146 (16%)
Query: 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965
+G ++A+ Y KAL +A A+ L Y GD+++A Y QKAL+++
Sbjct: 14 QGDYDEAIEYYQKALE--------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025
P + +++ +L YY+ + A++Y ++AL L P +A + N+
Sbjct: 66 --------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNL 109
Query: 1026 AMMEEGLGNVHVALRYLHKALKCNQR 1051
G+ A+ Y KAL+ + R
Sbjct: 110 GNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 24/156 (15%)
Query: 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 994
A A+ L Y GD+++A Y QKAL+++ P + +++ +L YY+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYD 52
Query: 995 LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054
A++Y ++AL L P +A + N+ G+ A+ Y KAL+ + R
Sbjct: 53 EAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--- 101
Query: 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090
+A +++ + A Y ++++ Q L++
Sbjct: 102 -----SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 16/114 (14%)
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 993
+A A+ L Y GD+++A Y QKAL++ +P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------YPNNAEAWYNLGNAYYKQGDY 59
Query: 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047
+ A++Y ++AL L +PN A + N+ G+ A+ Y KAL+
Sbjct: 60 DEAIEYYQKALEL--------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
Length = 125
Score = 43.9 bits (102), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 993
+A A+ L Y GD+++A Y QKAL+++ P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDY 59
Query: 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047
+ A++Y ++AL L PN A + N+ G+ A+ Y KAL+
Sbjct: 60 DEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 36.6 bits (83), Expect = 0.13, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 993
+A A+ L Y GD+ +A Y QKAL+++ P+ ++ +L YY+
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELD--------PNNASAWYNLGNAYYKQGDY 59
Query: 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047
+ A++Y ++AL L PN A + G+ A+ KAL+
Sbjct: 60 QKAIEYYQKALEL--------DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 35.8 bits (81), Expect = 0.23, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 993
+A A+ L Y GD+++A Y QKAL+++ P + +++ +L YY+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDY 53
Query: 994 ELALKYVKRALYL 1006
+ A++Y ++AL L
Sbjct: 54 DEAIEYYQKALEL 66
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
Length = 91
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 993
+A A+ L Y GD+++A Y QKAL+++ P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDY 59
Query: 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 1033
+ A++Y ++AL L PN A N+ ++ G
Sbjct: 60 DEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 91
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 946 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALY 1005
Y DF QA Y +KA D+ E +L V YY+ Q E K +K+A
Sbjct: 17 YKEKDFTQAKKYFEKACDLKENSGCF----------NLGVLYYQGQGVE---KNLKKAAS 63
Query: 1006 LLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKA 1045
C ++ N N+ +G+ N + AL+Y KA
Sbjct: 64 FYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,088,923
Number of Sequences: 62578
Number of extensions: 2023480
Number of successful extensions: 4590
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4561
Number of HSP's gapped (non-prelim): 28
length of query: 1888
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1775
effective length of database: 7,902,023
effective search space: 14026090825
effective search space used: 14026090825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)