Query 000191
Match_columns 1888
No_of_seqs 794 out of 3584
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 23:57:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000191.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000191hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nf1_A KLC 1, kinesin light ch 99.9 1.9E-21 6.3E-26 222.2 33.9 286 890-1175 24-310 (311)
2 3edt_B KLC 2, kinesin light ch 99.9 5.6E-22 1.9E-26 222.4 26.0 268 904-1173 12-282 (283)
3 3ulq_A Response regulator aspa 99.9 9.5E-20 3.2E-24 218.8 31.7 266 894-1178 104-374 (383)
4 4a1s_A PINS, partner of inscut 99.8 3.7E-19 1.3E-23 213.3 29.4 274 892-1177 85-377 (411)
5 3q15_A PSP28, response regulat 99.8 6.6E-19 2.2E-23 211.6 28.4 265 893-1177 101-370 (378)
6 3ro2_A PINS homolog, G-protein 99.8 1.5E-18 5.3E-23 198.3 29.8 274 892-1177 42-337 (338)
7 3sf4_A G-protein-signaling mod 99.8 1.2E-18 4E-23 206.7 29.4 274 892-1177 46-341 (406)
8 4a1s_A PINS, partner of inscut 99.8 2.1E-18 7.3E-23 206.7 30.2 273 890-1177 45-337 (411)
9 3ro2_A PINS homolog, G-protein 99.8 8.2E-18 2.8E-22 192.2 30.6 272 892-1177 4-297 (338)
10 3sf4_A G-protein-signaling mod 99.8 5.8E-18 2E-22 200.8 29.6 271 893-1177 9-301 (406)
11 3edt_B KLC 2, kinesin light ch 99.8 7.1E-18 2.4E-22 189.0 27.8 201 890-1090 40-281 (283)
12 3nf1_A KLC 1, kinesin light ch 99.8 2.3E-16 7.8E-21 180.1 30.4 203 890-1092 66-309 (311)
13 3n71_A Histone lysine methyltr 99.7 6.6E-17 2.3E-21 203.3 21.0 161 889-1049 305-465 (490)
14 2pl2_A Hypothetical conserved 99.7 4.1E-16 1.4E-20 173.9 21.4 197 893-1170 5-212 (217)
15 3n71_A Histone lysine methyltr 99.7 3.2E-16 1.1E-20 197.2 22.0 151 941-1091 315-465 (490)
16 4eqf_A PEX5-related protein; a 99.7 4.6E-16 1.6E-20 184.1 21.8 248 894-1177 66-315 (365)
17 3uq3_A Heat shock protein STI1 99.7 4E-15 1.4E-19 165.0 27.8 239 891-1177 3-241 (258)
18 3u4t_A TPR repeat-containing p 99.7 3.4E-16 1.2E-20 176.5 18.3 243 894-1175 4-253 (272)
19 1hz4_A MALT regulatory protein 99.7 1.4E-14 4.6E-19 172.6 32.2 272 891-1177 12-287 (373)
20 1w3b_A UDP-N-acetylglucosamine 99.7 4E-15 1.4E-19 177.8 27.3 236 893-1174 67-302 (388)
21 1w3b_A UDP-N-acetylglucosamine 99.7 4.7E-15 1.6E-19 177.2 26.7 235 894-1174 136-370 (388)
22 4g1t_A Interferon-induced prot 99.7 2.5E-15 8.4E-20 183.9 22.9 260 893-1173 51-364 (472)
23 1fch_A Peroxisomal targeting s 99.7 4.8E-15 1.6E-19 174.3 23.8 254 893-1177 64-364 (368)
24 3vtx_A MAMA; tetratricopeptide 99.7 7.3E-15 2.5E-19 157.2 22.7 166 893-1090 5-170 (184)
25 4gyw_A UDP-N-acetylglucosamine 99.6 2.6E-15 8.7E-20 197.2 22.9 172 891-1094 7-178 (723)
26 2ifu_A Gamma-SNAP; membrane fu 99.6 5.6E-15 1.9E-19 173.4 23.0 182 905-1093 3-187 (307)
27 3hym_B Cell division cycle pro 99.6 2.8E-15 9.7E-20 172.5 18.9 239 896-1174 59-301 (330)
28 2h6f_A Protein farnesyltransfe 99.6 8.5E-15 2.9E-19 178.9 23.7 241 886-1173 90-349 (382)
29 3ulq_A Response regulator aspa 99.6 4.7E-14 1.6E-18 169.2 29.6 213 889-1115 139-351 (383)
30 3hym_B Cell division cycle pro 99.6 8.7E-15 3E-19 168.4 22.1 243 894-1174 23-267 (330)
31 1hz4_A MALT regulatory protein 99.6 1.9E-14 6.3E-19 171.4 25.4 274 892-1177 52-327 (373)
32 3ieg_A DNAJ homolog subfamily 99.6 6.3E-14 2.1E-18 162.5 29.2 244 892-1175 2-266 (359)
33 3q15_A PSP28, response regulat 99.6 2.5E-14 8.4E-19 171.8 26.0 201 889-1095 137-370 (378)
34 3u3w_A Transcriptional activat 99.6 1.7E-14 5.7E-19 167.7 23.2 194 891-1094 73-270 (293)
35 3fp2_A TPR repeat-containing p 99.6 4.3E-14 1.5E-18 174.9 28.2 246 891-1177 241-496 (537)
36 2ho1_A Type 4 fimbrial biogene 99.6 6.1E-14 2.1E-18 156.5 26.6 205 893-1175 37-241 (252)
37 3ieg_A DNAJ homolog subfamily 99.6 6.7E-14 2.3E-18 162.3 27.9 240 893-1173 37-302 (359)
38 3qky_A Outer membrane assembly 99.6 4.6E-14 1.6E-18 160.3 25.5 202 892-1118 14-247 (261)
39 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-14 3.7E-19 160.8 19.6 205 891-1175 21-225 (243)
40 4eqf_A PEX5-related protein; a 99.6 9.5E-15 3.3E-19 172.8 19.5 256 893-1176 99-360 (365)
41 1qqe_A Vesicular transport pro 99.6 5E-14 1.7E-18 164.1 25.3 192 894-1092 38-230 (292)
42 4g1t_A Interferon-induced prot 99.6 2.9E-14 1E-18 174.3 22.8 246 907-1175 25-279 (472)
43 2qfc_A PLCR protein; TPR, HTH, 99.6 3.4E-14 1.2E-18 165.1 21.7 195 892-1094 74-270 (293)
44 2ifu_A Gamma-SNAP; membrane fu 99.6 5.7E-14 2E-18 164.8 23.4 185 895-1088 38-222 (307)
45 1qqe_A Vesicular transport pro 99.6 6.8E-14 2.3E-18 163.0 23.9 227 936-1172 38-269 (292)
46 4gyw_A UDP-N-acetylglucosamine 99.6 2.2E-14 7.6E-19 188.4 21.9 176 930-1177 4-179 (723)
47 3gw4_A Uncharacterized protein 99.6 1.5E-13 5.1E-18 147.9 24.6 179 903-1094 2-180 (203)
48 2vq2_A PILW, putative fimbrial 99.6 2.7E-13 9.2E-18 147.1 26.7 205 891-1173 6-212 (225)
49 3vtx_A MAMA; tetratricopeptide 99.6 8E-14 2.7E-18 149.1 22.2 170 934-1175 4-173 (184)
50 1ouv_A Conserved hypothetical 99.6 1.4E-13 5E-18 156.7 25.5 224 892-1175 5-254 (273)
51 3cv0_A Peroxisome targeting si 99.6 4.4E-14 1.5E-18 162.3 21.3 240 894-1176 22-273 (327)
52 2y4t_A DNAJ homolog subfamily 99.6 1.6E-13 5.6E-18 166.1 27.2 247 889-1175 22-289 (450)
53 2y4t_A DNAJ homolog subfamily 99.6 1.1E-13 3.7E-18 167.7 25.6 242 893-1172 60-324 (450)
54 3qww_A SET and MYND domain-con 99.6 2E-14 6.8E-19 178.3 18.7 134 893-1026 298-431 (433)
55 4i17_A Hypothetical protein; T 99.6 1.3E-13 4.4E-18 152.9 22.4 181 893-1106 7-220 (228)
56 3fp2_A TPR repeat-containing p 99.6 3.5E-13 1.2E-17 166.8 27.6 94 891-1000 23-116 (537)
57 3cv0_A Peroxisome targeting si 99.6 5.5E-14 1.9E-18 161.5 18.9 250 893-1177 55-320 (327)
58 2xpi_A Anaphase-promoting comp 99.6 2.2E-13 7.7E-18 171.4 25.7 239 896-1175 342-582 (597)
59 3qwp_A SET and MYND domain-con 99.5 3.7E-14 1.3E-18 175.9 17.0 140 893-1032 287-426 (429)
60 3qww_A SET and MYND domain-con 99.5 7E-14 2.4E-18 173.4 19.2 122 947-1068 310-431 (433)
61 2gw1_A Mitochondrial precursor 99.5 6.2E-13 2.1E-17 163.0 26.7 250 891-1174 4-335 (514)
62 2gw1_A Mitochondrial precursor 99.5 1.4E-13 4.6E-18 168.9 20.6 244 890-1176 234-482 (514)
63 1fch_A Peroxisomal targeting s 99.5 5.1E-14 1.7E-18 165.6 15.9 240 902-1176 34-318 (368)
64 2pl2_A Hypothetical conserved 99.5 1.3E-13 4.4E-18 153.8 17.4 163 893-1088 39-212 (217)
65 3uq3_A Heat shock protein STI1 99.5 1.5E-12 5E-17 144.4 25.7 184 893-1094 38-240 (258)
66 2xpi_A Anaphase-promoting comp 99.5 3.2E-13 1.1E-17 169.9 22.8 243 892-1173 304-546 (597)
67 3qwp_A SET and MYND domain-con 99.5 9.6E-14 3.3E-18 172.1 17.3 130 945-1074 297-426 (429)
68 3ro3_A PINS homolog, G-protein 99.5 6.7E-13 2.3E-17 135.4 20.4 157 931-1093 5-161 (164)
69 4abn_A Tetratricopeptide repea 99.5 2E-13 6.8E-18 170.7 19.6 169 892-1090 101-287 (474)
70 1xnf_A Lipoprotein NLPI; TPR, 99.5 9E-13 3.1E-17 148.1 22.6 230 905-1174 17-246 (275)
71 3as5_A MAMA; tetratricopeptide 99.5 1.1E-12 3.9E-17 137.2 19.9 168 892-1091 7-174 (186)
72 2q7f_A YRRB protein; TPR, prot 99.5 2.1E-12 7.2E-17 142.4 22.8 179 893-1108 57-235 (243)
73 3gw4_A Uncharacterized protein 99.5 1.9E-12 6.5E-17 139.3 21.8 172 892-1070 25-196 (203)
74 3ro3_A PINS homolog, G-protein 99.5 2.8E-12 9.5E-17 130.8 21.0 156 890-1051 6-161 (164)
75 4i17_A Hypothetical protein; T 99.5 7.3E-12 2.5E-16 138.8 25.9 200 935-1175 7-212 (228)
76 4abn_A Tetratricopeptide repea 99.5 5E-13 1.7E-17 167.1 17.8 217 911-1167 79-316 (474)
77 2qfc_A PLCR protein; TPR, HTH, 99.5 1.6E-12 5.5E-17 151.0 20.5 197 934-1177 74-271 (293)
78 2yhc_A BAMD, UPF0169 lipoprote 99.5 5.6E-12 1.9E-16 140.9 23.9 176 893-1088 4-211 (225)
79 3u3w_A Transcriptional activat 99.4 4.9E-12 1.7E-16 146.9 24.2 193 935-1177 75-271 (293)
80 4b4t_Q 26S proteasome regulato 99.4 3.1E-12 1.1E-16 154.7 22.7 236 895-1177 6-250 (434)
81 3u4t_A TPR repeat-containing p 99.4 1.5E-12 5.3E-17 146.6 18.3 186 893-1107 74-262 (272)
82 2h6f_A Protein farnesyltransfe 99.4 5.9E-12 2E-16 153.8 22.6 179 893-1109 131-318 (382)
83 3urz_A Uncharacterized protein 99.4 9.4E-12 3.2E-16 137.8 21.6 165 893-1090 4-186 (208)
84 3qky_A Outer membrane assembly 99.4 4.8E-12 1.6E-16 143.7 19.5 207 931-1162 11-251 (261)
85 2ho1_A Type 4 fimbrial biogene 99.4 1.2E-11 4.3E-16 137.8 22.5 175 893-1102 71-245 (252)
86 4b4t_Q 26S proteasome regulato 99.4 2.9E-11 9.8E-16 146.2 26.1 202 893-1101 55-256 (434)
87 3as5_A MAMA; tetratricopeptide 99.4 1.3E-11 4.6E-16 129.0 18.3 172 932-1175 5-176 (186)
88 2vq2_A PILW, putative fimbrial 99.4 5.5E-11 1.9E-15 128.9 23.4 177 893-1104 42-220 (225)
89 4ga2_A E3 SUMO-protein ligase 99.3 1.3E-12 4.3E-17 137.8 9.5 146 899-1076 3-149 (150)
90 1xnf_A Lipoprotein NLPI; TPR, 99.3 5.6E-11 1.9E-15 133.5 22.6 166 890-1089 40-205 (275)
91 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.1E-10 3.8E-15 130.4 22.4 178 935-1172 4-213 (225)
92 2pzi_A Probable serine/threoni 99.3 5.9E-12 2E-16 164.5 14.0 161 904-1089 402-562 (681)
93 3mkr_A Coatomer subunit epsilo 99.3 9.8E-11 3.3E-15 137.1 22.4 165 893-1090 65-229 (291)
94 1ouv_A Conserved hypothetical 99.3 1.3E-10 4.5E-15 132.3 22.4 190 933-1172 4-215 (273)
95 3qou_A Protein YBBN; thioredox 99.3 5.1E-11 1.7E-15 138.9 17.7 169 892-1090 116-284 (287)
96 2pzi_A Probable serine/threoni 99.3 6.7E-11 2.3E-15 154.6 20.6 169 893-1094 433-602 (681)
97 3mkr_A Coatomer subunit epsilo 99.3 1.6E-10 5.5E-15 135.3 21.7 224 901-1175 7-232 (291)
98 2vsy_A XCC0866; transferase, g 99.2 4.6E-11 1.6E-15 151.7 17.1 153 906-1090 2-157 (568)
99 4ga2_A E3 SUMO-protein ligase 99.2 1.7E-11 5.8E-16 129.2 10.8 139 940-1107 2-141 (150)
100 2xm6_A Protein corresponding t 99.2 5.6E-10 1.9E-14 139.0 26.2 158 892-1089 38-215 (490)
101 4gco_A Protein STI-1; structur 99.2 1.1E-10 3.7E-15 119.8 15.4 117 930-1070 8-124 (126)
102 2r5s_A Uncharacterized protein 99.2 5E-11 1.7E-15 127.9 13.2 166 894-1090 7-173 (176)
103 4gcn_A Protein STI-1; structur 99.2 3.7E-10 1.3E-14 115.8 18.0 108 932-1048 5-112 (127)
104 2xm6_A Protein corresponding t 99.2 2.3E-09 7.7E-14 133.6 28.6 157 893-1089 75-251 (490)
105 4gco_A Protein STI-1; structur 99.2 2.5E-10 8.5E-15 117.1 16.1 116 890-1029 10-125 (126)
106 1p5q_A FKBP52, FK506-binding p 99.2 4.2E-11 1.4E-15 143.1 11.9 162 906-1091 126-295 (336)
107 3urz_A Uncharacterized protein 99.2 1.1E-09 3.6E-14 121.2 22.0 170 977-1175 4-189 (208)
108 2ond_A Cleavage stimulation fa 99.2 6.9E-10 2.4E-14 129.9 20.5 199 905-1177 69-275 (308)
109 3rjv_A Putative SEL1 repeat pr 99.2 5.1E-10 1.7E-14 124.5 17.6 163 892-1090 17-197 (212)
110 3rjv_A Putative SEL1 repeat pr 99.2 4.7E-10 1.6E-14 124.8 17.2 178 910-1173 3-198 (212)
111 4gcn_A Protein STI-1; structur 99.1 9.2E-10 3.1E-14 112.8 18.0 108 974-1090 5-112 (127)
112 1hh8_A P67PHOX, NCF-2, neutrop 99.1 4E-10 1.4E-14 122.7 15.3 141 890-1049 3-151 (213)
113 2fo7_A Synthetic consensus TPR 99.1 1.3E-09 4.3E-14 107.4 17.5 131 894-1048 2-132 (136)
114 1a17_A Serine/threonine protei 99.1 1.7E-09 5.6E-14 112.2 19.0 139 933-1093 11-149 (166)
115 2fo7_A Synthetic consensus TPR 99.1 1.1E-09 3.8E-14 107.8 16.8 131 936-1090 2-132 (136)
116 1a17_A Serine/threonine protei 99.1 1.5E-09 5.3E-14 112.4 18.3 140 891-1052 11-150 (166)
117 3gyz_A Chaperone protein IPGC; 99.1 2E-10 7E-15 122.4 10.7 104 930-1049 31-134 (151)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.1 6.5E-10 2.2E-14 121.1 14.5 137 935-1090 6-150 (213)
119 2vgx_A Chaperone SYCD; alterna 99.1 1.1E-09 3.6E-14 115.5 14.2 103 931-1049 17-119 (148)
120 1p5q_A FKBP52, FK506-binding p 99.1 2E-09 6.8E-14 128.6 18.1 144 890-1049 144-295 (336)
121 3upv_A Heat shock protein STI1 99.1 3.8E-09 1.3E-13 106.2 17.2 123 933-1073 2-124 (126)
122 3gyz_A Chaperone protein IPGC; 99.0 4.4E-10 1.5E-14 119.9 10.2 102 973-1090 32-133 (151)
123 3qou_A Protein YBBN; thioredox 99.0 2.4E-09 8.4E-14 124.7 16.4 171 932-1172 114-284 (287)
124 3upv_A Heat shock protein STI1 99.0 7E-09 2.4E-13 104.3 16.8 122 892-1031 3-124 (126)
125 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 4.4E-10 1.5E-14 140.0 9.3 154 906-1083 247-407 (457)
126 1wao_1 Serine/threonine protei 99.0 1.4E-10 4.6E-15 145.6 4.5 178 892-1093 5-200 (477)
127 2vyi_A SGTA protein; chaperone 99.0 9.3E-09 3.2E-13 101.2 16.0 125 930-1078 7-131 (131)
128 2lni_A Stress-induced-phosphop 99.0 5.5E-09 1.9E-13 103.9 14.3 124 929-1076 10-133 (133)
129 3dra_A Protein farnesyltransfe 99.0 4.1E-08 1.4E-12 116.6 24.0 239 894-1174 33-289 (306)
130 2vyi_A SGTA protein; chaperone 98.9 1.2E-08 4.2E-13 100.4 15.9 122 890-1035 9-130 (131)
131 2vsy_A XCC0866; transferase, g 98.9 7.6E-09 2.6E-13 131.4 18.3 133 893-1049 23-158 (568)
132 3sz7_A HSC70 cochaperone (SGT) 98.9 1.1E-08 3.6E-13 108.1 16.4 104 930-1049 6-109 (164)
133 2e2e_A Formate-dependent nitri 98.9 2.7E-09 9.3E-14 113.5 11.9 123 903-1049 20-145 (177)
134 3rkv_A Putative peptidylprolyl 98.9 8.2E-09 2.8E-13 108.8 15.2 108 891-1006 9-126 (162)
135 2lni_A Stress-induced-phosphop 98.9 8.4E-09 2.9E-13 102.6 14.1 122 889-1034 12-133 (133)
136 4f3v_A ESX-1 secretion system 98.9 5E-09 1.7E-13 122.8 14.2 215 892-1175 6-240 (282)
137 1xi4_A Clathrin heavy chain; a 98.9 6E-08 2.1E-12 131.3 26.2 221 900-1173 1056-1310(1630)
138 2fbn_A 70 kDa peptidylprolyl i 98.9 1.5E-09 5.2E-14 118.2 9.1 152 904-1081 15-176 (198)
139 3rkv_A Putative peptidylprolyl 98.9 8.5E-09 2.9E-13 108.6 14.4 110 932-1049 8-127 (162)
140 2r5s_A Uncharacterized protein 98.9 2.7E-09 9.1E-14 114.4 10.5 166 936-1172 7-173 (176)
141 2vgx_A Chaperone SYCD; alterna 98.9 2.8E-08 9.6E-13 104.6 18.1 103 889-1007 17-119 (148)
142 2ond_A Cleavage stimulation fa 98.9 1.5E-08 5.2E-13 118.5 17.4 170 894-1092 100-272 (308)
143 3sz7_A HSC70 cochaperone (SGT) 98.9 1E-08 3.4E-13 108.3 14.4 103 889-1007 7-109 (164)
144 2hr2_A Hypothetical protein; a 98.9 1.5E-08 5.2E-13 109.2 15.4 118 934-1052 10-135 (159)
145 3e4b_A ALGK; tetratricopeptide 98.9 3.5E-08 1.2E-12 122.6 20.9 222 893-1172 141-387 (452)
146 2fbn_A 70 kDa peptidylprolyl i 98.9 1.1E-08 3.8E-13 111.4 14.0 132 890-1039 35-176 (198)
147 2xcb_A PCRH, regulatory protei 98.9 3.2E-08 1.1E-12 102.4 16.6 105 930-1050 13-117 (142)
148 1na0_A Designed protein CTPR3; 98.9 4.2E-08 1.4E-12 95.7 15.9 118 934-1075 8-125 (125)
149 2hr2_A Hypothetical protein; a 98.8 3.1E-08 1.1E-12 106.8 15.8 118 891-1009 9-134 (159)
150 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 1.4E-08 4.9E-13 126.4 15.3 136 890-1041 265-407 (457)
151 3q49_B STIP1 homology and U bo 98.8 3E-08 1E-12 100.1 14.9 104 932-1051 6-109 (137)
152 2xev_A YBGF; tetratricopeptide 98.8 5.5E-08 1.9E-12 97.1 16.6 118 936-1068 3-120 (129)
153 2xcb_A PCRH, regulatory protei 98.8 5.3E-08 1.8E-12 100.7 16.7 103 889-1007 14-116 (142)
154 1elr_A TPR2A-domain of HOP; HO 98.8 5.7E-08 1.9E-12 95.8 16.0 107 933-1048 2-108 (131)
155 2c2l_A CHIP, carboxy terminus 98.8 1.5E-08 5E-13 117.8 13.6 102 934-1051 3-104 (281)
156 1wao_1 Serine/threonine protei 98.8 4E-10 1.4E-14 141.4 0.0 130 932-1085 3-134 (477)
157 1xi4_A Clathrin heavy chain; a 98.8 1.7E-07 5.7E-12 127.1 24.4 239 892-1169 1104-1381(1630)
158 1ihg_A Cyclophilin 40; ppiase 98.8 2.5E-08 8.5E-13 121.2 15.3 133 935-1083 223-363 (370)
159 1na0_A Designed protein CTPR3; 98.8 9.3E-08 3.2E-12 93.2 16.5 117 893-1033 9-125 (125)
160 1ihg_A Cyclophilin 40; ppiase 98.8 3.2E-08 1.1E-12 120.2 16.1 134 891-1040 221-362 (370)
161 2e2e_A Formate-dependent nitri 98.8 2.1E-08 7.3E-13 106.6 12.3 122 945-1090 20-144 (177)
162 2xev_A YBGF; tetratricopeptide 98.8 1.7E-07 5.8E-12 93.6 18.2 116 895-1025 4-119 (129)
163 2c2l_A CHIP, carboxy terminus 98.8 3.2E-08 1.1E-12 115.0 14.3 190 893-1124 4-193 (281)
164 3q49_B STIP1 homology and U bo 98.8 1.6E-07 5.5E-12 94.8 17.5 101 893-1009 9-109 (137)
165 1sgo_A HSPC210, protein C14ORF 98.8 6.5E-09 2.2E-13 107.5 7.0 75 183-274 44-127 (139)
166 1elr_A TPR2A-domain of HOP; HO 98.8 1.1E-07 3.9E-12 93.6 15.4 106 892-1006 3-108 (131)
167 1elw_A TPR1-domain of HOP; HOP 98.8 1.2E-07 4.1E-12 91.7 15.1 114 892-1029 3-116 (118)
168 2ooe_A Cleavage stimulation fa 98.7 3E-07 1E-11 115.7 22.3 235 910-1177 255-497 (530)
169 1elw_A TPR1-domain of HOP; HOP 98.7 1.8E-07 6.1E-12 90.4 15.0 99 934-1048 3-101 (118)
170 2if4_A ATFKBP42; FKBP-like, al 98.7 2.2E-08 7.6E-13 119.8 9.8 144 890-1049 176-329 (338)
171 2if4_A ATFKBP42; FKBP-like, al 98.7 2.1E-08 7.3E-13 119.9 9.4 141 934-1090 178-328 (338)
172 1hxi_A PEX5, peroxisome target 98.7 7.3E-08 2.5E-12 97.9 12.0 95 896-1006 20-114 (121)
173 2dba_A Smooth muscle cell asso 98.7 1.3E-07 4.5E-12 95.9 13.8 102 892-1006 27-128 (148)
174 2dba_A Smooth muscle cell asso 98.7 8.2E-08 2.8E-12 97.4 12.3 106 931-1049 24-129 (148)
175 3e4b_A ALGK; tetratricopeptide 98.7 2E-07 6.7E-12 115.9 17.1 223 895-1171 108-350 (452)
176 1hxi_A PEX5, peroxisome target 98.7 8.9E-08 3E-12 97.3 11.1 98 936-1049 18-115 (121)
177 3q7a_A Farnesyltransferase alp 98.6 1.4E-06 4.7E-11 105.2 22.3 238 900-1176 60-335 (349)
178 2kck_A TPR repeat; tetratricop 98.6 7.1E-08 2.4E-12 92.6 8.0 102 933-1048 4-106 (112)
179 1b89_A Protein (clathrin heavy 98.6 3.3E-08 1.1E-12 122.1 7.1 224 895-1197 34-257 (449)
180 2ooe_A Cleavage stimulation fa 98.6 9.7E-07 3.3E-11 111.0 19.4 168 893-1090 272-454 (530)
181 3k9i_A BH0479 protein; putativ 98.5 1.9E-07 6.6E-12 93.2 8.6 90 905-1007 2-91 (117)
182 3k9i_A BH0479 protein; putativ 98.5 3.4E-07 1.2E-11 91.4 9.8 90 947-1049 2-91 (117)
183 2kck_A TPR repeat; tetratricop 98.5 3.6E-07 1.2E-11 87.6 8.9 96 895-1006 8-106 (112)
184 4f3v_A ESX-1 secretion system 98.4 6.3E-07 2.1E-11 105.1 11.8 131 896-1048 105-237 (282)
185 1dce_A Protein (RAB geranylger 98.4 3.5E-06 1.2E-10 108.1 18.3 167 900-1103 35-229 (567)
186 3dss_A Geranylgeranyl transfer 98.3 9.2E-05 3.1E-09 88.8 26.9 172 901-1109 37-236 (331)
187 3mv2_B Coatomer subunit epsilo 98.3 2.7E-05 9.1E-10 92.5 21.6 186 896-1107 103-294 (310)
188 2l6j_A TPR repeat-containing p 98.3 3.4E-07 1.2E-11 88.7 4.3 96 935-1043 4-102 (111)
189 1na3_A Designed protein CTPR2; 98.3 5.2E-06 1.8E-10 77.4 11.6 87 931-1033 5-91 (91)
190 1b89_A Protein (clathrin heavy 98.3 1.6E-06 5.4E-11 107.3 10.2 229 893-1169 61-308 (449)
191 2l6j_A TPR repeat-containing p 98.2 6.1E-07 2.1E-11 86.9 5.0 97 892-1001 3-102 (111)
192 1zu2_A Mitochondrial import re 98.2 2.4E-06 8.2E-11 92.0 9.9 86 905-1006 14-120 (158)
193 2kat_A Uncharacterized protein 98.2 4.5E-06 1.6E-10 82.5 10.4 84 910-1009 2-85 (115)
194 1zu2_A Mitochondrial import re 98.2 2.3E-06 7.7E-11 92.2 8.4 87 947-1049 14-121 (158)
195 1na3_A Designed protein CTPR2; 98.2 9.7E-06 3.3E-10 75.6 11.3 88 972-1075 4-91 (91)
196 3dra_A Protein farnesyltransfe 98.2 8.3E-05 2.8E-09 88.3 21.5 155 893-1079 67-238 (306)
197 1klx_A Cysteine rich protein B 98.1 1.3E-05 4.5E-10 83.4 12.8 110 907-1048 9-126 (138)
198 2kat_A Uncharacterized protein 98.1 1.2E-05 4E-10 79.5 11.1 83 953-1051 3-85 (115)
199 1klx_A Cysteine rich protein B 98.1 2E-05 7E-10 81.9 11.9 109 949-1089 9-125 (138)
200 3ma5_A Tetratricopeptide repea 98.0 2.2E-05 7.6E-10 76.5 10.3 72 973-1052 3-74 (100)
201 3ma5_A Tetratricopeptide repea 98.0 2.3E-05 8E-10 76.4 10.1 71 931-1009 3-73 (100)
202 1dce_A Protein (RAB geranylger 97.9 2.6E-05 9E-10 100.0 12.0 154 894-1079 64-244 (567)
203 3dss_A Geranylgeranyl transfer 97.8 0.00055 1.9E-08 82.1 20.5 150 909-1090 90-267 (331)
204 3mv2_B Coatomer subunit epsilo 97.8 0.0005 1.7E-08 81.7 19.9 155 936-1113 101-268 (310)
205 3ly7_A Transcriptional activat 97.8 0.0002 6.7E-09 86.8 16.3 143 888-1049 191-340 (372)
206 2kc7_A BFR218_protein; tetratr 97.8 4.7E-05 1.6E-09 72.8 8.1 87 896-1006 3-90 (99)
207 2kc7_A BFR218_protein; tetratr 97.7 5.9E-05 2E-09 72.1 7.8 87 939-1049 4-91 (99)
208 4e6h_A MRNA 3'-END-processing 97.6 0.0025 8.4E-08 83.5 24.0 245 911-1197 327-587 (679)
209 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00066 2.3E-08 67.1 12.5 83 893-984 5-87 (104)
210 3txn_A 26S proteasome regulato 97.4 0.014 4.9E-07 71.4 25.0 189 894-1092 20-212 (394)
211 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0016 5.5E-08 64.3 13.4 87 1019-1111 5-91 (104)
212 3q7a_A Farnesyltransferase alp 97.4 0.0013 4.5E-08 79.4 14.7 152 894-1077 89-258 (349)
213 3ly7_A Transcriptional activat 97.2 0.0036 1.2E-07 75.9 16.2 121 951-1090 215-339 (372)
214 4e6h_A MRNA 3'-END-processing 97.2 0.008 2.7E-07 78.7 20.6 174 894-1090 344-533 (679)
215 3u64_A Protein TP_0956; tetrat 97.0 0.01 3.6E-07 69.6 16.0 106 929-1049 146-270 (301)
216 3ffl_A Anaphase-promoting comp 96.9 0.011 3.6E-07 64.0 14.6 109 894-1002 21-147 (167)
217 3bee_A Putative YFRE protein; 96.7 0.0088 3E-07 58.4 11.1 83 932-1027 3-88 (93)
218 3ffl_A Anaphase-promoting comp 96.6 0.018 6E-07 62.3 13.6 126 937-1071 22-165 (167)
219 4g26_A Pentatricopeptide repea 96.6 0.018 6E-07 72.8 15.8 160 901-1088 34-202 (501)
220 3u64_A Protein TP_0956; tetrat 96.4 0.052 1.8E-06 63.8 16.5 125 951-1090 103-269 (301)
221 3bee_A Putative YFRE protein; 96.3 0.013 4.5E-07 57.2 9.4 84 974-1070 3-89 (93)
222 3txn_A 26S proteasome regulato 96.3 0.18 6.1E-06 61.8 21.4 159 907-1076 73-235 (394)
223 1pc2_A Mitochondria fission pr 96.2 0.053 1.8E-06 58.0 14.1 67 933-1006 30-100 (152)
224 1pc2_A Mitochondria fission pr 96.1 0.055 1.9E-06 57.9 13.9 79 1017-1107 30-112 (152)
225 4b4t_P 26S proteasome regulato 95.1 1 3.5E-05 56.0 22.1 115 976-1094 136-251 (445)
226 4g26_A Pentatricopeptide repea 94.8 0.71 2.4E-05 58.3 19.7 130 937-1087 28-166 (501)
227 4b4t_R RPN7, 26S proteasome re 93.5 0.85 2.9E-05 56.4 16.2 109 933-1048 129-237 (429)
228 4b4t_R RPN7, 26S proteasome re 93.4 1.2 4E-05 55.1 17.2 109 975-1090 129-237 (429)
229 1nzn_A CGI-135 protein, fissio 93.0 1.9 6.4E-05 44.7 15.0 87 908-1006 16-103 (126)
230 3lpz_A GET4 (YOR164C homolog); 93.0 20 0.00067 43.0 29.2 188 895-1091 14-217 (336)
231 2uy1_A Cleavage stimulation fa 92.9 5.6 0.00019 49.9 22.6 212 910-1173 196-414 (493)
232 3plu_A Ubiquitin-like modifier 92.9 0.15 5.2E-06 50.1 6.4 71 22-95 18-91 (93)
233 2uy1_A Cleavage stimulation fa 92.1 3.1 0.00011 52.3 18.7 164 894-1087 214-380 (493)
234 4b4t_P 26S proteasome regulato 91.9 1.6 5.5E-05 54.2 15.6 113 934-1051 136-250 (445)
235 2wpv_A GET4, UPF0363 protein Y 91.4 28 0.00097 41.3 26.4 185 898-1091 18-218 (312)
236 2ff4_A Probable regulatory pro 91.2 1.9 6.4E-05 52.6 14.9 114 893-1014 115-242 (388)
237 1nzn_A CGI-135 protein, fissio 91.1 3.4 0.00012 42.8 14.4 71 975-1049 33-104 (126)
238 3mkq_A Coatomer beta'-subunit; 90.9 4.2 0.00014 52.9 18.8 25 937-961 683-707 (814)
239 4h7y_A Dual specificity protei 90.0 1.6 5.5E-05 46.6 10.8 104 937-1049 15-124 (161)
240 3mkq_A Coatomer beta'-subunit; 89.8 1.9 6.5E-05 56.1 14.1 29 977-1005 681-709 (814)
241 1ya0_A SMG-7 transcript varian 89.1 1.1 3.8E-05 56.5 10.6 80 935-1030 152-231 (497)
242 2wyq_A HHR23A, UV excision rep 88.4 0.76 2.6E-05 43.4 6.6 74 22-97 2-80 (85)
243 1wyw_B Ubiquitin-like protein 88.1 0.48 1.6E-05 46.6 5.0 73 21-96 17-92 (97)
244 3o48_A Mitochondria fission 1 87.6 4 0.00014 42.6 11.7 77 1019-1107 40-119 (134)
245 4dwf_A HLA-B-associated transc 87.3 0.84 2.9E-05 43.8 6.2 72 23-97 3-76 (90)
246 2kdb_A Homocysteine-responsive 87.2 0.68 2.3E-05 46.0 5.6 72 22-95 20-99 (99)
247 2ff4_A Probable regulatory pro 86.9 3.4 0.00012 50.3 12.8 105 987-1099 125-243 (388)
248 3kae_A CDC27, possible protein 86.8 8.4 0.00029 41.8 13.7 98 938-1048 36-143 (242)
249 1o9d_A 14-3-3-like protein C; 85.9 20 0.0007 41.4 17.6 56 994-1049 152-208 (260)
250 4h7y_A Dual specificity protei 85.8 4.7 0.00016 43.1 11.1 97 984-1089 20-122 (161)
251 4gns_B Protein CSD3, chitin bi 85.6 4.8 0.00016 53.2 13.9 123 906-1045 261-397 (754)
252 3mtn_B UBA80, ubcep1, ubiquiti 85.0 1.3 4.6E-05 41.5 6.2 70 24-96 2-74 (85)
253 1y8m_A FIS1; mitochondria, unk 84.8 4.4 0.00015 42.8 10.4 77 1017-1105 37-116 (144)
254 3phx_B Ubiquitin-like protein 84.2 1.6 5.6E-05 40.6 6.4 70 24-96 3-75 (79)
255 4a20_A Ubiquitin-like protein 84.2 1.7 5.9E-05 43.0 6.7 75 18-95 12-93 (98)
256 4fhn_B Nucleoporin NUP120; pro 84.1 28 0.00096 48.3 21.2 103 937-1043 844-962 (1139)
257 4gns_B Protein CSD3, chitin bi 84.1 6.1 0.00021 52.3 13.8 86 992-1085 300-395 (754)
258 3v6c_B Ubiquitin; structural g 83.7 1.6 5.5E-05 42.0 6.2 70 23-95 15-87 (91)
259 4eew_A Large proline-rich prot 83.6 1.6 5.4E-05 41.6 6.1 71 23-96 15-87 (88)
260 1y8m_A FIS1; mitochondria, unk 83.0 14 0.00049 39.0 13.3 70 933-1006 37-106 (144)
261 3mkq_B Coatomer subunit alpha; 83.0 18 0.0006 39.6 14.6 103 901-1045 13-115 (177)
262 1ndd_A NEDD8, protein (ubiquit 82.9 1.7 5.9E-05 39.7 5.8 68 26-96 1-71 (76)
263 3m62_B UV excision repair prot 82.9 1.6 5.4E-05 43.6 6.0 69 25-96 1-72 (106)
264 4hcn_B Polyubiquitin, ubiquiti 82.3 1.5 5E-05 43.1 5.4 70 24-96 21-93 (98)
265 1j8c_A Ubiquitin-like protein 82.2 2.5 8.6E-05 43.6 7.3 88 3-98 11-104 (125)
266 2dzi_A Ubiquitin-like protein 82.1 1.9 6.4E-05 40.2 5.8 71 23-96 5-78 (81)
267 3dbh_I NEDD8; cell cycle, acti 82.1 2.1 7.2E-05 40.5 6.3 69 24-95 11-82 (88)
268 1wh3_A 59 kDa 2'-5'-oligoadeny 81.8 1.3 4.5E-05 42.0 4.7 71 23-96 5-78 (87)
269 3kae_A CDC27, possible protein 81.8 12 0.0004 40.7 12.1 97 981-1090 37-143 (242)
270 3a9j_A Ubiquitin; protein comp 81.5 1.9 6.4E-05 39.4 5.5 68 26-96 1-71 (76)
271 3o48_A Mitochondria fission 1 81.2 5.1 0.00017 41.9 9.1 65 893-964 40-107 (134)
272 3n3k_B Ubiquitin; hydrolase, p 81.2 1.3 4.6E-05 41.5 4.5 70 24-96 2-74 (85)
273 4b4t_S RPN3, 26S proteasome re 81.1 2.4 8.4E-05 53.4 8.0 145 902-1049 145-300 (523)
274 2uyz_B Small ubiquitin-related 81.1 1.5 5.2E-05 40.8 4.8 69 25-96 3-74 (79)
275 1ya0_A SMG-7 transcript varian 80.6 4.2 0.00014 51.3 10.0 63 978-1048 153-215 (497)
276 1uh6_A Ubiquitin-like 5; beta- 79.8 2.1 7.1E-05 42.7 5.4 68 25-95 28-98 (100)
277 1wia_A Hypothetical ubiquitin- 79.2 2.2 7.6E-05 41.4 5.4 67 24-96 6-76 (95)
278 4fbj_B NEDD8; effector-HOST ta 79.2 2.4 8.1E-05 40.7 5.6 68 26-96 1-71 (88)
279 3k9o_B Ubiquitin, UBB+1; E2-25 79.1 2.3 8E-05 41.1 5.6 68 26-96 2-72 (96)
280 1wgd_A Homocysteine-responsive 78.8 2.2 7.6E-05 41.3 5.3 71 24-96 6-84 (93)
281 1v2y_A 3300001G02RIK protein; 78.8 1.3 4.5E-05 44.4 3.7 70 24-96 6-94 (105)
282 1we6_A Splicing factor, putati 78.7 3.3 0.00011 41.5 6.7 71 23-96 25-102 (111)
283 1jgn_B PAIP2, polyadenylate-bi 78.4 0.81 2.8E-05 33.3 1.4 16 1689-1704 4-19 (26)
284 2br9_A 14-3-3E, 14-3-3 protein 78.0 1E+02 0.0035 35.1 22.5 61 1036-1096 147-208 (234)
285 1ttn_A DC-UBP, dendritic cell- 78.0 2.6 9E-05 41.9 5.7 69 25-96 23-94 (106)
286 3uzd_A 14-3-3 protein gamma; s 77.6 1.1E+02 0.0037 35.2 23.8 61 1035-1095 147-208 (248)
287 1uel_A HHR23B, UV excision rep 76.9 3 0.0001 40.5 5.7 69 26-96 1-74 (95)
288 2hj8_A Interferon-induced 17 k 76.4 3.3 0.00011 39.6 5.7 74 24-101 3-80 (88)
289 2ojr_A Ubiquitin; lanthide-bin 76.1 3.6 0.00012 41.2 6.1 71 23-96 33-106 (111)
290 3lpz_A GET4 (YOR164C homolog); 76.1 99 0.0034 37.0 19.3 164 933-1122 33-208 (336)
291 2bwf_A Ubiquitin-like protein 75.9 3.6 0.00012 37.8 5.6 67 25-96 4-74 (77)
292 3re2_A Predicted protein; meni 75.9 25 0.00086 42.1 13.6 74 976-1052 254-329 (472)
293 2lxa_A Ubiquitin-like protein 75.8 2.4 8.1E-05 41.1 4.5 72 26-100 2-80 (87)
294 2faz_A Ubiquitin-like containi 75.8 4.1 0.00014 37.7 6.0 70 25-97 2-76 (78)
295 1wy8_A NP95-like ring finger p 75.8 3.3 0.00011 39.4 5.5 70 25-97 7-81 (89)
296 3vdz_A Ubiquitin-40S ribosomal 75.8 3.5 0.00012 41.4 5.9 70 24-96 34-106 (111)
297 3ubw_A 14-3-3E, 14-3-3 protein 75.5 1.2E+02 0.0043 34.9 21.6 61 1035-1095 172-233 (261)
298 2l7r_A Ubiquitin-like protein 75.5 2.5 8.5E-05 41.1 4.5 71 20-96 14-88 (93)
299 1yx5_B Ubiquitin; proteasome, 75.4 3.9 0.00013 39.9 6.0 69 26-97 1-72 (98)
300 4b4t_S RPN3, 26S proteasome re 75.4 4.1 0.00014 51.4 7.6 139 945-1089 146-298 (523)
301 2wpv_A GET4, UPF0363 protein Y 74.6 29 0.001 41.1 14.2 127 933-1085 31-158 (312)
302 2npm_A 14-3-3 domain containin 73.8 1.4E+02 0.0047 34.6 21.8 188 892-1096 27-233 (260)
303 1wx8_A Riken cDNA 4931431F19; 73.8 3.4 0.00012 40.0 5.1 69 23-96 15-87 (96)
304 1o9d_A 14-3-3-like protein C; 73.8 41 0.0014 38.9 14.7 58 1036-1093 152-210 (260)
305 2klc_A Ubiquilin-1; ubiquitin- 73.4 4.1 0.00014 40.2 5.6 69 23-96 23-95 (101)
306 3u84_A Menin; MLL, JUND, ledgf 72.8 31 0.0011 42.0 13.5 74 976-1052 276-351 (550)
307 4b4t_O 26S proteasome regulato 72.5 69 0.0024 39.0 17.4 108 942-1049 83-199 (393)
308 1yqb_A Ubiquilin 3; structural 72.5 4 0.00014 40.3 5.2 72 20-96 17-92 (100)
309 4b4t_O 26S proteasome regulato 72.2 35 0.0012 41.6 14.7 108 984-1091 83-199 (393)
310 1sif_A Ubiquitin; hydrophobic 72.0 4.9 0.00017 38.5 5.6 70 24-96 8-80 (88)
311 2kan_A Uncharacterized protein 71.6 4.6 0.00016 39.4 5.4 71 22-97 12-87 (94)
312 3rt3_B Ubiquitin-like protein 71.5 5.5 0.00019 42.1 6.5 72 22-96 78-152 (159)
313 3spa_A Mtrpol, DNA-directed RN 70.0 28 0.00097 47.4 13.8 105 932-1047 124-229 (1134)
314 3iqu_A 14-3-3 protein sigma; s 69.9 1.6E+02 0.0054 33.6 24.9 183 894-1097 9-212 (236)
315 3mkq_B Coatomer subunit alpha; 69.9 26 0.00089 38.3 11.3 100 946-1087 16-115 (177)
316 1we7_A SF3A1 protein; structur 69.7 4.1 0.00014 41.1 4.7 71 23-96 23-106 (115)
317 2o8p_A 14-3-3 domain containin 69.1 1.6E+02 0.0054 33.4 23.5 178 898-1091 11-198 (227)
318 4fhn_B Nucleoporin NUP120; pro 68.8 45 0.0015 46.2 16.3 102 896-1001 845-962 (1139)
319 2kk8_A Uncharacterized protein 68.8 5.5 0.00019 38.0 5.2 71 25-98 10-84 (84)
320 2o8p_A 14-3-3 domain containin 68.7 35 0.0012 38.7 12.3 69 937-1007 129-198 (227)
321 4gq4_A Menin; tumor suppressor 67.7 49 0.0017 40.5 13.7 74 976-1052 261-336 (489)
322 3re2_A Predicted protein; meni 67.3 38 0.0013 40.6 12.5 72 935-1009 255-328 (472)
323 3q3f_A Ribonuclease/ubiquitin 67.3 7 0.00024 43.2 6.3 68 26-96 106-176 (189)
324 2br9_A 14-3-3E, 14-3-3 protein 66.6 93 0.0032 35.4 15.4 58 994-1051 147-205 (234)
325 3l0w_B Monoubiquitinated proli 66.2 6.1 0.00021 42.8 5.5 68 26-96 1-71 (169)
326 2gow_A HCG-1 protein, ubiquiti 66.2 9.5 0.00032 39.4 6.6 70 23-95 15-97 (125)
327 1v5o_A 1700011N24RIK protein; 66.1 7 0.00024 38.5 5.5 70 24-96 6-83 (102)
328 1wx7_A Ubiquilin 3; ubiquitin- 65.9 5.5 0.00019 39.5 4.7 69 23-96 15-87 (106)
329 3uzd_A 14-3-3 protein gamma; s 65.6 1.2E+02 0.0042 34.7 16.1 57 994-1050 148-205 (248)
330 3spa_A Mtrpol, DNA-directed RN 65.6 35 0.0012 46.6 13.4 105 973-1088 123-228 (1134)
331 2k8h_A Small ubiquitin protein 65.3 9.3 0.00032 38.6 6.2 78 19-99 20-100 (110)
332 1wgh_A Ubiquitin-like 3, HCG-1 65.0 10 0.00035 38.7 6.5 70 23-95 14-96 (116)
333 3u84_A Menin; MLL, JUND, ledgf 65.0 43 0.0015 40.8 12.5 72 935-1009 277-350 (550)
334 3r9m_A BRO1 domain-containing 64.0 1.3E+02 0.0043 36.6 17.0 33 1059-1091 251-283 (376)
335 2kdi_A Ubiquitin, vacuolar pro 63.8 8.1 0.00028 39.0 5.5 70 25-97 9-81 (114)
336 3qx1_A FAS-associated factor 1 63.6 15 0.00053 34.9 7.2 72 24-97 6-82 (84)
337 3u30_A Ubiquitin, linear DI-ub 61.6 8.2 0.00028 41.5 5.5 71 23-96 18-91 (172)
338 3b1l_X E3 ubiquitin-protein li 65.6 1.7 5.8E-05 40.1 0.0 67 26-95 1-70 (76)
339 4gq4_A Menin; tumor suppressor 61.3 1.6E+02 0.0055 36.1 16.5 72 935-1009 262-335 (489)
340 3ubw_A 14-3-3E, 14-3-3 protein 61.0 1.4E+02 0.0046 34.6 15.4 57 994-1050 173-230 (261)
341 3kyd_D Small ubiquitin-related 60.5 11 0.00036 38.6 5.6 85 10-97 25-112 (115)
342 1x1m_A Ubiquitin-like protein 59.9 7.2 0.00025 38.8 4.3 73 23-97 10-99 (107)
343 2npm_A 14-3-3 domain containin 59.7 1.1E+02 0.0039 35.3 14.6 56 994-1050 173-229 (260)
344 2xzm_9 RPS31E; ribosome, trans 58.4 2.1 7.1E-05 47.4 0.0 65 26-95 1-65 (189)
345 3rau_A Tyrosine-protein phosph 58.3 1.6E+02 0.0055 35.5 16.5 36 1059-1094 250-285 (363)
346 3rau_A Tyrosine-protein phosph 58.2 1.3E+02 0.0043 36.4 15.6 41 885-925 109-158 (363)
347 2io1_B Small ubiquitin-related 57.7 14 0.00047 36.2 5.7 71 24-97 6-79 (94)
348 1wz0_A Ubiquitin-like protein 57.5 28 0.00096 34.7 8.0 72 23-97 22-96 (104)
349 2kzr_A Ubiquitin thioesterase 56.1 11 0.00039 35.8 4.8 71 26-98 1-78 (86)
350 2dzj_A Synaptic glycoprotein S 56.1 16 0.00054 35.3 5.8 70 25-94 10-85 (88)
351 1zbp_A Hypothetical protein VP 53.9 66 0.0023 37.4 11.4 56 901-964 5-60 (273)
352 1wxv_A BAG-family molecular ch 53.9 15 0.00052 35.2 5.3 72 24-100 6-87 (92)
353 1wju_A NEDD8 ultimate buster-1 53.9 18 0.0006 36.1 5.8 69 24-95 14-89 (100)
354 1se9_A Ubiquitin family; ubiqu 53.6 25 0.00085 36.4 7.1 71 23-96 14-101 (126)
355 3u30_A Ubiquitin, linear DI-ub 53.4 17 0.00057 39.0 6.1 68 25-95 96-166 (172)
356 3iqu_A 14-3-3 protein sigma; s 52.4 2.5E+02 0.0084 32.1 15.6 57 993-1049 149-206 (236)
357 2io0_B Small ubiquitin-related 52.3 20 0.00069 34.9 5.9 72 23-97 3-77 (91)
358 3b08_A Polyubiquitin-C, ubiqui 51.4 16 0.00056 37.7 5.5 70 26-98 1-73 (152)
359 3b08_A Polyubiquitin-C, ubiqui 51.0 19 0.00065 37.2 6.0 69 25-96 76-147 (152)
360 2d07_B Ubiquitin-like protein 51.0 24 0.00082 34.4 6.2 72 23-97 15-89 (93)
361 1v86_A DNA segment, CHR 7, way 50.8 21 0.00072 34.7 5.8 70 23-98 15-88 (95)
362 1wgg_A Ubiquitin carboxyl-term 50.7 17 0.00059 35.5 5.2 67 24-96 6-77 (96)
363 3m63_B Ubiquitin domain-contai 50.4 10 0.00035 37.4 3.5 67 25-96 28-98 (101)
364 3c3r_A Programmed cell death 6 48.6 1.6E+02 0.0055 35.7 14.4 33 1060-1092 274-306 (380)
365 3efz_A 14-3-3 protein; 14-3-3, 48.5 74 0.0025 36.9 10.6 56 951-1006 168-226 (268)
366 4a5x_A MITD1, MIT domain-conta 47.9 64 0.0022 31.1 8.5 45 883-927 6-50 (86)
367 3ai5_A Yeast enhanced green fl 47.0 24 0.0008 41.9 6.4 71 23-96 231-304 (307)
368 2eke_C Ubiquitin-like protein 46.7 28 0.00095 35.0 6.0 72 22-97 28-102 (106)
369 3u5e_m 60S ribosomal protein L 46.7 4.1 0.00014 41.9 0.0 67 26-95 1-70 (128)
370 3rt3_B Ubiquitin-like protein 45.1 26 0.00089 36.8 6.0 70 26-97 3-76 (159)
371 1zbp_A Hypothetical protein VP 44.9 1.8E+02 0.006 33.9 13.0 129 1028-1177 6-134 (273)
372 3efz_A 14-3-3 protein; 14-3-3, 44.1 1.2E+02 0.004 35.3 11.4 56 993-1048 168-226 (268)
373 3t5v_B Nuclear mRNA export pro 43.9 5E+02 0.017 32.2 18.0 71 937-1008 178-252 (455)
374 1v5t_A 8430435I17RIK protein; 43.4 19 0.00066 34.5 4.2 70 25-97 7-82 (90)
375 1zb1_A BRO1 protein; AIP1, BRO 43.4 1.8E+02 0.0061 35.3 13.7 34 1060-1093 256-289 (392)
376 3u5c_f 40S ribosomal protein S 43.0 5.1 0.00017 42.8 0.0 67 26-95 1-70 (152)
377 1wj4_A KIAA0794 protein; UBX d 42.7 33 0.0011 35.3 6.0 54 23-78 41-94 (124)
378 2xs1_A Programmed cell death 6 41.5 1.3E+02 0.0043 39.6 12.7 35 1059-1093 258-292 (704)
379 1wm3_A Ubiquitin-like protein 41.1 35 0.0012 31.4 5.4 67 26-95 2-71 (72)
380 1zb1_A BRO1 protein; AIP1, BRO 40.7 1.8E+02 0.0062 35.3 13.2 35 1143-1177 257-291 (392)
381 1wf9_A NPL4 family protein; be 40.3 43 0.0015 33.2 6.3 69 26-98 8-95 (107)
382 3esl_A Checkpoint serine/threo 40.0 4.3E+02 0.015 29.4 14.9 85 998-1089 58-143 (202)
383 4ady_A RPN2, 26S proteasome re 39.4 6E+02 0.021 34.6 18.6 144 936-1086 71-255 (963)
384 3ktp_B Trinucleotide repeat-co 39.4 12 0.00042 27.2 1.5 14 1696-1709 8-21 (22)
385 1oqy_A HHR23A, UV excision rep 38.0 22 0.00077 43.1 4.5 71 24-97 6-83 (368)
386 2dzk_A UBX domain-containing p 34.8 68 0.0023 32.1 6.8 72 24-96 12-89 (109)
387 2cr5_A Reproduction 8; UBX dom 34.2 53 0.0018 32.9 5.8 55 23-79 21-75 (109)
388 2r17_C Vacuolar protein sortin 33.4 6.6E+02 0.022 29.5 18.6 153 936-1093 100-270 (298)
389 4ady_A RPN2, 26S proteasome re 33.1 3.9E+02 0.013 36.4 15.3 173 890-1087 410-586 (963)
390 1wjn_A Tubulin-folding protein 32.2 88 0.003 30.2 6.9 73 23-96 7-91 (97)
391 2cpt_A SKD1 protein, vacuolar 31.1 2.7E+02 0.0094 28.2 10.5 38 1068-1105 25-64 (117)
392 3a4r_A Nfatc2-interacting prot 30.1 62 0.0021 30.4 5.2 70 23-95 5-78 (79)
393 2cpt_A SKD1 protein, vacuolar 30.1 1.6E+02 0.0053 30.0 8.5 38 890-927 15-52 (117)
394 2kd0_A LRR repeats and ubiquit 29.9 53 0.0018 31.1 4.8 67 26-97 13-83 (85)
395 3mv2_A Coatomer subunit alpha; 29.8 7.8E+02 0.027 29.3 16.7 69 982-1050 33-145 (325)
396 3r9m_A BRO1 domain-containing 29.4 8.1E+02 0.028 29.4 16.4 38 887-924 108-157 (376)
397 4a5x_A MITD1, MIT domain-conta 28.2 3.6E+02 0.012 25.8 10.3 43 1063-1105 18-61 (86)
398 2vkj_A TM1634; membrane protei 27.5 1.8E+02 0.006 28.4 7.6 48 891-944 51-99 (106)
399 4ajy_B Transcription elongatio 26.6 52 0.0018 33.7 4.2 66 27-95 2-78 (118)
400 2fnj_B Transcription elongatio 26.3 40 0.0014 34.5 3.4 65 28-95 3-78 (118)
401 4gq2_M Nucleoporin NUP120; bet 26.1 1.6E+02 0.0055 40.0 10.3 70 937-1006 842-926 (950)
402 2r17_C Vacuolar protein sortin 26.1 8.5E+02 0.029 28.6 17.3 154 894-1052 100-271 (298)
403 2wb7_A PT26-6P; extra chromoso 26.0 2.6E+02 0.0088 35.1 10.8 48 994-1047 449-496 (526)
404 1v6e_A Cytoskeleton-associated 25.8 1.1E+02 0.0038 29.4 6.4 70 24-96 6-86 (95)
405 1s3s_G P47 protein; AAA ATPase 25.4 56 0.0019 33.7 4.3 56 25-80 52-107 (127)
406 3c3r_A Programmed cell death 6 24.6 5.1E+02 0.018 31.2 13.3 37 888-924 137-182 (380)
407 2w2u_A Hypothetical P60 katani 24.6 1.1E+02 0.0038 29.2 5.9 36 891-926 17-52 (83)
408 2crb_A Nuclear receptor bindin 24.3 4.5E+02 0.015 25.9 9.8 49 1058-1106 12-61 (97)
409 2pm7_A Protein WEB1, protein t 24.2 1E+03 0.035 28.9 18.7 29 1140-1168 333-361 (399)
410 1qsa_A Protein (soluble lytic 23.8 5.1E+02 0.017 33.5 13.7 126 942-1088 221-346 (618)
411 2v6y_A AAA family ATPase, P60 23.7 1.2E+02 0.004 29.0 5.9 36 891-926 9-44 (83)
412 2rpa_A Katanin P60 ATPase-cont 23.3 98 0.0033 29.5 5.1 37 891-927 10-46 (78)
413 4gq2_M Nucleoporin NUP120; bet 22.6 2.5E+02 0.0086 38.1 11.1 96 941-1048 816-926 (950)
414 4b6w_A Tubulin-specific chaper 21.5 1.8E+02 0.0061 27.7 6.7 72 25-97 2-83 (86)
415 2rpa_A Katanin P60 ATPase-cont 21.2 2.2E+02 0.0075 27.1 7.1 34 1064-1097 15-48 (78)
416 2wm9_A Dedicator of cytokinesi 20.8 4.1E+02 0.014 32.6 11.6 29 978-1006 12-40 (428)
417 1wfd_A Hypothetical protein 15 20.7 4E+02 0.014 25.8 9.1 70 1017-1086 13-84 (93)
418 2kjr_A CG11242; UBL, ubiquitin 20.5 1E+02 0.0035 30.1 4.9 72 22-96 12-94 (95)
No 1
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.9e-21 Score=222.20 Aligned_cols=286 Identities=22% Similarity=0.226 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++.+.....+.+++..+.++..+|.+|..+|++++|+.++++++.+.++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999887778899999999999999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+.+++....++.++|.+|..+|++++|+.+|++++.+.....+.+++....++.++|.+|...|++++|+.+|++++++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK-LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTR 1128 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~-LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~ 1128 (1888)
....+.+++....++..+|.+|..+|++++|+.++++++++.... ++..+.........+..+................
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 998888899999999999999999999999999999999887652 2222221111111111111110000000000000
Q ss_pred CCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1129 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1129 ~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
..........++....++..+|.+|..+|++++|+.+|++++++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 01111222345567889999999999999999999999999998753
No 2
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.89 E-value=5.6e-22 Score=222.44 Aligned_cols=268 Identities=21% Similarity=0.195 Sum_probs=219.6
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
...|++++|+.+|++|+.++.+..+.+++..+.++..+|.+|..+|++++|+.++++++.+.++..|.+++....++.+|
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45799999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000191 984 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 1063 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~a 1063 (1888)
|.+|..+|++++|+.+|++++.+.....+.++|....++.++|.+|..+|++++|+.+|++++++.+...+.+++..+.+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCCchhhhhcCCc
Q 000191 1064 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQDAAAWLEYFESK--AFEQQEAARNGTRKPDASIASKGHL 1140 (1888)
Q Consensus 1064 l~nLA~ay~~lGdydeAle~lqkALeI~kk~L-G~dh~~tl~a~~~La~L~qk--a~e~AeAl~~~~~~~~~~~as~~~~ 1140 (1888)
+.++|.+|..+|++++|+.++++++.+..... +..+.........+..+... ....+..+... ..........++
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY--GSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------------CCCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH--HHHHHhcCCCCH
Confidence 99999999999999999999999999876532 22222111111111111110 00000000000 000111223445
Q ss_pred cHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1141 SVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1141 svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
....++..+|.+|..+|++++|+.+|++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 677889999999999999999999999999864
No 3
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.86 E-value=9.5e-20 Score=218.75 Aligned_cols=266 Identities=11% Similarity=0.025 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++..|..++..|++++|+.+|++|+.++... .+.+..+.++..+|.+|+.+|++++|+.++++|+.++++. +...
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~ 180 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYN 180 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccch
Confidence 455668999999999999999999999987664 4566788999999999999999999999999999998874 2235
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
+..+.++.+||.+|..+|++++|+.+|++|+.+.... .+++..+.++.++|.+|..+|++++|+.+|++|+++.+..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~- 257 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES- 257 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh-
Confidence 6778999999999999999999999999999998875 4567788899999999999999999999999999998765
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCC
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA-----FEQQEAARNGTR 1128 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka-----~e~AeAl~~~~~ 1128 (1888)
.+.+..+.++.++|.+|..+|++++|+.++++|+++...... +........++.+.... ...+..+....
T Consensus 258 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~- 332 (383)
T 3ulq_A 258 -NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD---VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK- 332 (383)
T ss_dssp -TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred -ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence 222567899999999999999999999999999999876532 22222233344333222 22222222221
Q ss_pred CCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccC
Q 000191 1129 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQ 1178 (1888)
Q Consensus 1129 ~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q 1178 (1888)
.......+++..+|.+|..+|++++|+.+|++++++.+++..
T Consensus 333 --------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 333 --------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred --------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 223356778999999999999999999999999999999883
No 4
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.84 E-value=3.7e-19 Score=213.33 Aligned_cols=274 Identities=12% Similarity=0.085 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.+.... .+++..+.++..+|.+|..+|++++|+.++++++.+.++. .
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 160 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM--NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--G 160 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--h
Confidence 35678889999999999999999999999998776 4567888999999999999999999999999999998875 3
Q ss_pred CChhhHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000191 972 DHPDTMKSYGDLAVFYYRLQH-----------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 1034 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGd-----------------yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ 1034 (1888)
+++....++.++|.+|..+|+ +++|+.+|++++.+.... .+++..+.++.++|.+|..+|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCC
Confidence 567788999999999999999 999999999999998775 3457788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-
Q 000191 1035 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE- 1113 (1888)
Q Consensus 1035 yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~- 1113 (1888)
+++|+.+|++++++.... .+....+.++.++|.+|..+|++++|+.++++++.+.... .++.....++..++.+.
T Consensus 239 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~ 314 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREF--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYT 314 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHH
Confidence 999999999999998775 3556677899999999999999999999999999998764 33333444555555443
Q ss_pred -HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1114 -SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1114 -qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+.++.+..+..... .......+......++..+|.+|..+|++++|+.+|++++++.++++
T Consensus 315 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 315 LLHEFNTAIEYHNRHL--AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HTTCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HcCCHHHHHHHHHHHH--HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 334444433332221 11111222335667899999999999999999999999999998887
No 5
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.83 E-value=6.6e-19 Score=211.62 Aligned_cols=265 Identities=16% Similarity=0.058 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++..|..++..|++++|+.+|++|+.+...+ .+.+..+.++.+||.+|+.+|++++|+.++++|+.+.++.. ..
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~ 177 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LY 177 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-Cc
Confidence 4567788999999999999999999999987765 45677899999999999999999999999999999987642 22
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
....+.++.+||.+|..+|++++|+.+|++|+.+.... .+....+.++.++|.+|..+|++++|+.+|++|+++.+..
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999999999998764 3345678899999999999999999999999999998765
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-----HHHHHHHHhcC
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA-----FEQQEAARNGT 1127 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka-----~e~AeAl~~~~ 1127 (1888)
.++..+.++.++|.+|..+|++++|+.++++|+++......+.... ....+..+.... ...+......
T Consensus 256 ---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~~~l~~ly~~~~~~~~~~~al~~~~~- 328 (378)
T 3q15_A 256 ---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE---LFLFLQAVYKETVDERKIHDLLSYFEK- 328 (378)
T ss_dssp ---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH---HHHHHHHHHSSSCCHHHHHHHHHHHHH-
T ss_pred ---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHhCCCcHHHHHHHHHHHHh-
Confidence 3445588999999999999999999999999999875543322222 223333332221 2222222221
Q ss_pred CCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1128 RKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1128 ~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
......+.+++..+|.+|..+|++++|+.+|++++++.+++.
T Consensus 329 --------~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 329 --------KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 112235667889999999999999999999999999999887
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.83 E-value=1.5e-18 Score=198.28 Aligned_cols=274 Identities=14% Similarity=0.086 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.++++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+.++. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 117 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 117 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--c
Confidence 36778889999999999999999999999998776 4567778999999999999999999999999999998874 3
Q ss_pred CChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGd--------------------yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+......++.++|.+|..+|+ +++|+.++++++.+.... .+.+..+.++.++|.+|..
T Consensus 118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHH
Confidence 455667899999999999999 999999999999988775 3457778899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+|++++|+.++++++++.... .+....+.++..+|.+|...|++++|+.++++++.+.... .+......+...++.
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 271 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 271 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHH
Confidence 999999999999999998775 4556678899999999999999999999999999998764 233344445555554
Q ss_pred HH--HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1112 FE--SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1112 L~--qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+. .+..+.+........ .......+......++..+|.+|..+|++++|+.+|++++++.++++
T Consensus 272 ~~~~~g~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 272 TYTLLQDYEKAIDYHLKHL--AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHhcCHHHHHHHHHHHH--HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 43 334444433322211 11111222335567899999999999999999999999999988765
No 7
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.82 E-value=1.2e-18 Score=206.75 Aligned_cols=274 Identities=13% Similarity=0.093 Sum_probs=224.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.++++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+..+. .
T Consensus 46 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~ 121 (406)
T 3sf4_A 46 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--N 121 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--c
Confidence 36778899999999999999999999999998775 4567788999999999999999999999999999998875 3
Q ss_pred CChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQH--------------------TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGd--------------------yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+......++.++|.+|...|+ +++|+.+|.+++.+.... .+++..+.++.++|.+|..
T Consensus 122 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~ 199 (406)
T 3sf4_A 122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYL 199 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHH
Confidence 456677899999999999999 999999999999998775 4567788999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+|++++|+.+|++++++.... .+....+.++.++|.+|..+|++++|+.++++++.+.... .++.....+...++.
T Consensus 200 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 200 LGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGN 275 (406)
T ss_dssp HTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC--cCchHHHHHHHHHHH
Confidence 999999999999999998775 4556778899999999999999999999999999998764 233444455555554
Q ss_pred HHH--HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1112 FES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1112 L~q--ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+.. +.++.+........ .......+......++..+|.+|..+|++++|+.+|++++++...++
T Consensus 276 ~~~~~g~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 341 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHL--AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVG 341 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHH--HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 443 34444433322211 11111222335577899999999999999999999999999988765
No 8
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=2.1e-18 Score=206.74 Aligned_cols=273 Identities=16% Similarity=0.151 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhp-e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
...+..++.+|..++..|++++|+.+|++++.+ .+.++ ..+.++..+|.+|+.+|++++|+.++++++.+.++.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 456788899999999999999999999999987 23333 356789999999999999999999999999998875
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC--------------
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-------------- 1034 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~-------------- 1034 (1888)
.+++....++.++|.+|..+|++++|+.+|++++.+.... .+++..+.++.++|.+|..+|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 4567888999999999999999999999999999998775 3567889999999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1035 ---VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1035 ---yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+++|+.+|++++++.... .+.+..+.++.++|.+|..+|++++|+.++++++++.... .+......++..++.
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~ 271 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF--GDRAAERRANSNLGN 271 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHH
Confidence 999999999999998776 4567788899999999999999999999999999998774 233334445555554
Q ss_pred HHH--HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1112 FES--KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1112 L~q--ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+.. +.++.+......... ......+......++..+|.+|..+|++++|+.+|++++.+.....
T Consensus 272 ~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 272 SHIFLGQFEDAAEHYKRTLA--LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHTTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 433 334443333222111 1111122234567899999999999999999999999999988764
No 9
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.81 E-value=8.2e-18 Score=192.24 Aligned_cols=272 Identities=14% Similarity=0.084 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++..|..++..|++++|+.+|++++... ..+....+.++..+|.+|..+|++++|+.++++++.+.++. .
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 35677888999999999999999999999871 22233346899999999999999999999999999998875 4
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-----------------
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN----------------- 1034 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~----------------- 1034 (1888)
+.+....++.++|.+|..+|++++|+.++++++.+.... .+.+..+.++.++|.+|..+|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 567778999999999999999999999999999998774 3456678899999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1035 ---VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1035 ---yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
+++|+.++++++.+.... .+.+..+.++.++|.+|...|++++|+.++++++.+.... .+......+...++.
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGN 231 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHH
Confidence 999999999999998776 4567788899999999999999999999999999998764 233334444455543
Q ss_pred H--HHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1112 F--ESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1112 L--~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+ ..+..+.+........ .......+......++..+|.+|..+|++++|+.++++++.+.....
T Consensus 232 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 232 AYIFLGEFETASEYYKKTL--LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 3 3444444443332211 11111122334577899999999999999999999999999987764
No 10
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.80 E-value=5.8e-18 Score=200.77 Aligned_cols=271 Identities=14% Similarity=0.092 Sum_probs=218.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++..|..++..|++++|+.+|++++.+. ..+....+.++..+|.+|+.+|++++|+.++++|+.+.++. .+
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cc
Confidence 5567888999999999999999999999871 22333357899999999999999999999999999998874 45
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------------------
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------------------ 1034 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~------------------ 1034 (1888)
.+..+.++.++|.+|..+|++++|+.++++++.+.... .+.+..+.++.++|.+|...|+
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 67788999999999999999999999999999998775 2446678899999999999999
Q ss_pred --HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000191 1035 --VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYF 1112 (1888)
Q Consensus 1035 --yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L 1112 (1888)
+++|+.+|++++++.... .+.+..+.++.++|.+|..+|++++|+.++++++.+.... .+......+...++.+
T Consensus 161 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHH
Confidence 999999999999998776 4567788999999999999999999999999999998764 3333444455555544
Q ss_pred H--HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1113 E--SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1113 ~--qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
. .+.++.+........ .......+......++..+|.+|..+|++++|+.+|++++++.....
T Consensus 237 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 301 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTL--LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN 301 (406)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHH--HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC
Confidence 3 344444433332211 11111122334577899999999999999999999999999987764
No 11
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.80 E-value=7.1e-18 Score=189.02 Aligned_cols=201 Identities=22% Similarity=0.206 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++.+..+.+|.+++..+.++..||.+|..+|++++|+.++++++.+.++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 45577888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+.+++....++.++|.+|..+|++++|+.+|++++.++....+.+++..+.++.++|.+|..+|++++|+.+|++++++.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999999999999999999999985
Q ss_pred HHh-----------------------------------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1050 QRL-----------------------------------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1050 ek~-----------------------------------------~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
... .+..++..+.++..||.+|..+|++++|+.++++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 442 123568888999999999999999999999999998
Q ss_pred HH
Q 000191 1089 QI 1090 (1888)
Q Consensus 1089 eI 1090 (1888)
++
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 65
No 12
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=2.3e-16 Score=180.08 Aligned_cols=203 Identities=23% Similarity=0.245 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..+...|++++|+.+|++++.+.....+.+++..+.++..+|.+|..+|++++|+.++++++.+.++..
T Consensus 66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (311)
T 3nf1_A 66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145 (311)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc
Confidence 44577788899999999999999999999999999998888999999999999999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+.+++....++.++|.+|...|++++|+.+|++++.++....+.+++....++.++|.+|..+|++++|+.+|++++++.
T Consensus 146 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998888899999999999999999999999999999999875
Q ss_pred HHh-----------------------------------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1050 QRL-----------------------------------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1050 ek~-----------------------------------------~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
... ....++..+.++..+|.+|..+|++++|+.++++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 432 112467888999999999999999999999999999
Q ss_pred HHHH
Q 000191 1089 QILR 1092 (1888)
Q Consensus 1089 eI~k 1092 (1888)
++..
T Consensus 306 ~l~~ 309 (311)
T 3nf1_A 306 RSRK 309 (311)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8753
No 13
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.72 E-value=6.6e-17 Score=203.34 Aligned_cols=161 Identities=18% Similarity=0.140 Sum_probs=153.7
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..+++.+..+..+|+|++|+.+|+++|++.++++|.+|+.++.++.+||.+|..+|+|++|+.+++++|.+.+++
T Consensus 305 ~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~ 384 (490)
T 3n71_A 305 MIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKL 384 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 34456677788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+|.+||.++.+|+|||.+|..+|+|++|+.+|++|+++.+..+|++||.++.++.+++.++..++.|++|...|+++.+.
T Consensus 385 lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 385 YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred H
Q 000191 1049 N 1049 (1888)
Q Consensus 1049 ~ 1049 (1888)
.
T Consensus 465 ~ 465 (490)
T 3n71_A 465 A 465 (490)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=4.1e-16 Score=173.94 Aligned_cols=197 Identities=21% Similarity=0.167 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.++++++.+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 456788899999999999999999999875 5677789999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRL-----------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~l-----------GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
.|....++.+||.+|..+ |++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+
T Consensus 69 ~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 69 TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--------NPRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChHHHHHH
Confidence 466788999999999999 9999999999999986 355667889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 1121 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~Ae 1121 (1888)
|++|+++. ....+++++|.+|..+|++++|+..|++++++ .+++.
T Consensus 141 ~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~P~~~--------------------- 185 (217)
T 2pl2_A 141 LKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-----APKDL--------------------- 185 (217)
T ss_dssp HHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCH---------------------
T ss_pred HHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh---------------------
Confidence 99999873 23567889999999999999999999998854 23322
Q ss_pred HHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1122 AARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1122 Al~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKAL 1170 (1888)
.++..+|.++..+|++++|+.+|+++.
T Consensus 186 ----------------------~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 186 ----------------------DLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp ----------------------HHHHHHHHHHTC---------------
T ss_pred ----------------------HHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 346677788888899999988887764
No 15
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.70 E-value=3.2e-16 Score=197.20 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=144.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000191 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAA 1020 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~ 1020 (1888)
.+..+..+|+|++|+.+++++|.+.++++|.+|+.++.++++||.+|..+|+|++|+.++++++.++++.+|++||+++.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+++|||.+|..+|+|++|+.+|++|+++.+..+|++|+.++.++.+|++++..++.|++|...|+++.+.+
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999886543
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=4.6e-16 Score=184.09 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..++..|++++|+.+|++++.. .|..+.++..+|.+|..+|++++|+.+|++++.+ +
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 129 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--------Q 129 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 44677899999999999999999999987 4556789999999999999999999999999987 4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP--NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP--~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
|....++.+||.+|..+|++++|+.+|++++.+.......... ..+.++.++|.+|...|++++|+.+|++++++.
T Consensus 130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 207 (365)
T 4eqf_A 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-- 207 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--
T ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--
Confidence 5667889999999999999999999999999874332111000 123455677999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
++. ....++.++|.+|..+|++++|+.++++++++ .+++......+..+ +...+.++.+..........
T Consensus 208 ---p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~- 276 (365)
T 4eqf_A 208 ---GDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGAT-LANGDRSEEAVEAYTRALEI- 276 (365)
T ss_dssp ---CSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH-
T ss_pred ---cCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc-
Confidence 321 13567889999999999999999999999976 45565543333222 33444455554443321110
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+....++..+|.+|..+|++++|+.+|++++++.....
T Consensus 277 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 277 -------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred -------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 123366899999999999999999999999999998765
No 17
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4e-15 Score=165.02 Aligned_cols=239 Identities=13% Similarity=0.078 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++... ....++..+|.+|..+|++++|+.++++++.+.... +
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~ 72 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-R 72 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-c
Confidence 457889999999999999999999999999872 224689999999999999999999999999987653 2
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+.+....++.++|.+|..+|++++|+.+|++++.+. +. +.++..+|++++|+.++++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~--------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--------RT--------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--------ch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 3444557899999999999999999999999999852 11 33455556666777777666653
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
.+....++..+|.+|...|++++|+.++++++.+ .+.+......+..+ ++..+.++.+..........
T Consensus 135 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 135 ------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAA-LAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp ------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH
T ss_pred ------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcccHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHh
Confidence 2445566666677777777777777777666653 23333322222111 22233333333222211000
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+....++..+|.+|..+|++++|+.+|++++++..+..
T Consensus 203 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 203 --------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241 (258)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhc
Confidence 112245788999999999999999999999999997665
No 18
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.69 E-value=3.4e-16 Score=176.49 Aligned_cols=243 Identities=11% Similarity=0.045 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++..|..++..|++++|+.+|++++.. .|....++..+|.+|+.+|++++|+.++++++.. ..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~ 70 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-----VNAT 70 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCch
Confidence 45778899999999999999999999876 2333458899999999999999999999999873 2333
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
.....+|.++|.+|..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++++
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 137 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----- 137 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-----
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-----
Confidence 344788999999999999999999999999986 2444567899999999999999999999999876
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH--HHHH-----HHHHhc
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA--FEQQ-----EAARNG 1126 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka--~e~A-----eAl~~~ 1126 (1888)
.+....+++++|..+...+++++|+.++++++++ .+++.........+....... .+.+ +++...
T Consensus 138 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 138 ---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL-----KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 2334577889995555567999999999999875 355544333332222211110 1111 111111
Q ss_pred CCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1127 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1127 ~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
...+. .......+++..+|.+|..+|++++|+.+|++++++...
T Consensus 210 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 210 APGGA-----KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp GGGGG-----GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hcccc-----cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 00010 001235678999999999999999999999999998654
No 19
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.68 E-value=1.4e-14 Score=172.55 Aligned_cols=272 Identities=11% Similarity=-0.020 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYH-RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dh-pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
..+..+...|..++..|++++|+.++++++... ...+ ...+.++..+|.+|..+|++++|+.++++++.+..+.
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~- 86 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH- 86 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc-
Confidence 345667778899999999999999999999863 2222 3356788999999999999999999999999998773
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+......++.++|.+|..+|++++|+.+|++++.+.....+..++....++.++|.+|..+|++++|+.++++++++.
T Consensus 87 -~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 87 -DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 165 (373)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 2334556788999999999999999999999999999887666668888899999999999999999999999999987
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHH--HHHHHHHHHHHHHHhc
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQ-DAAAWLE--YFESKAFEQQEAARNG 1126 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl-~a~~~La--~L~qka~e~AeAl~~~ 1126 (1888)
... + ....+.++..+|.++...|++++|..++++++.+.... + .+.... .....+. ++..+..+.+......
T Consensus 166 ~~~-~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 240 (373)
T 1hz4_A 166 SSY-Q--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG-K-YHSDWISNANKVRVIYWQMTGDKAAAANWLRH 240 (373)
T ss_dssp TTS-C--GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-C-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcc-C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-C-cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 543 2 22355788899999999999999999999999886432 1 121111 1111122 3345555555555444
Q ss_pred CCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1127 TRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1127 ~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
....... ........+..++.++..+|++++|+.++++++.+....+
T Consensus 241 a~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~ 287 (373)
T 1hz4_A 241 TAKPEFA----NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR 287 (373)
T ss_dssp SCCCCCT----TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCC----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 3322211 1111123567889999999999999999999998877643
No 20
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.68 E-value=4e-15 Score=177.83 Aligned_cols=236 Identities=17% Similarity=0.181 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+...|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+..|++++.+
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 130 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-------- 130 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 567888899999999999999999999886 4566678999999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|+...++.++|.+|..+|++++|+.+|++++.+ +|....++.++|.+|...|++++|+.+|++++++.
T Consensus 131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--- 199 (388)
T 1w3b_A 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--- 199 (388)
T ss_dssp CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 4566778889999999999999999999999875 35567788899999999999999999999998863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
+....++.++|.++...|++++|+..+++++.+ .+++......+..+ +...+..+.+.........
T Consensus 200 -----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~--- 265 (388)
T 1w3b_A 200 -----PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-----SPNHAVVHGNLACV-YYEQGLIDLAIDTYRRAIE--- 265 (388)
T ss_dssp -----TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH---
T ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh---
Confidence 234567888899999999999999999888865 46665443333222 3334444444433322111
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1133 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1133 ~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
..+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 266 -----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 302 (388)
T 1w3b_A 266 -----LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302 (388)
T ss_dssp -----TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT
T ss_pred -----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 1122345688889999999999999999999888743
No 21
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.67 E-value=4.7e-15 Score=177.23 Aligned_cols=235 Identities=19% Similarity=0.164 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+..+|..+...|++++|+.+|++++.. +|..+.++.++|.+|..+|++++|+.+|++++.+ +
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~ 199 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIET--------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------D 199 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------C
Confidence 44566788999999999999999999986 4666789999999999999999999999999986 4
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
|....++.++|.++...|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 200 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---- 267 (388)
T 1w3b_A 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---- 267 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 666789999999999999999999999999986 34556788999999999999999999999999762
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDAS 1133 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~ 1133 (1888)
++ ...++.++|.+|...|++++|+.++++++++ .+++......+..+ +...+..+.+..........
T Consensus 268 -p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~--- 334 (388)
T 1w3b_A 268 -PH---FPDAYCNLANALKEKGSVAEAEDCYNTALRL-----CPTHADSLNNLANI-KREQGNIEEAVRLYRKALEV--- 334 (388)
T ss_dssp -SS---CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHTTTCHHHHHHHHHHHTTS---
T ss_pred -CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc---
Confidence 33 3457889999999999999999999999965 46666544433322 23334455554444332221
Q ss_pred hhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1134 ~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 335 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 335 -----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp -----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 123456899999999999999999999999998644
No 22
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.5e-15 Score=183.87 Aligned_cols=260 Identities=12% Similarity=0.027 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~-dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
+..+..+|.++..+|++++|+++|++|+++.....+. .++..+.+|.+||.+|+.+|++++|+.++++++.+.+...+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4556678999999999999999999999998776443 467788899999999999999999999999999999998888
Q ss_pred CChhhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRL--QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~l--GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.++....++.++|..+... ++|++|+.+|++|+.+ .++++.....+..++..+...+++++|+..|++|+++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 7888889999998877665 5799999999999986 24444332222222222334455555555555555431
Q ss_pred HH-------------hcCC-----------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1050 QR-------------LLGP-----------------DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1050 ek-------------~~G~-----------------d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh 1099 (1888)
.. ..+. ..+....++.++|.+|...|++++|+.++++|+++ .+++
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~ 280 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-----IPNN 280 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTC
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-----CCCh
Confidence 00 0000 01233456788999999999999999999999865 3555
Q ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCC
Q 000191 1100 LRTQDAAAWLEYFESKA---------------------FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGR 1158 (1888)
Q Consensus 1100 ~~tl~a~~~La~L~qka---------------------~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGd 1158 (1888)
...... ++.++... .+.+...... .....+.....+..+|.+|..+|+
T Consensus 281 ~~~~~~---lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--------a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 281 AYLHCQ---IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK--------ADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH--------HHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH--------HhhcCCchhhhhhhHHHHHHHhcc
Confidence 443322 22221111 1111111110 000111223357889999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 000191 1159 NVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1159 yeEAleyyeKALeL~ 1173 (1888)
+++|+.+|++++.+.
T Consensus 350 ~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999764
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.65 E-value=4.8e-15 Score=174.31 Aligned_cols=254 Identities=13% Similarity=0.099 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 127 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-------- 127 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------
Confidence 345677899999999999999999999875 4556778999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------------------------------h
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL------------------------------------------T 1010 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k------------------------------------------i 1010 (1888)
.|....++.++|.+|..+|++++|+.+|++++.+... .
T Consensus 128 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 207 (368)
T 1fch_A 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 207 (368)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3556778999999999999999999999988764211 0
Q ss_pred cCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1011 CGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1011 ~G~dhP~--~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
.. ..|. ...++.++|.+|...|++++|+.+|++++++. + ....++.++|.+|...|++++|+.++++++
T Consensus 208 ~~-~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 208 VR-LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-----P---NDYLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp HH-HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----c---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 00 1223 46788999999999999999999999999873 2 335688899999999999999999999998
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh---hhcCCccHHHHHHHHHHHHHHcCChHHHHHH
Q 000191 1089 QILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI---ASKGHLSVSDLLDYINPSHDTKGRNVSTLKR 1165 (1888)
Q Consensus 1089 eI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~---as~~~~svaelL~~Lg~~y~~qGdyeEAley 1165 (1888)
.+ .+++......+..+ ++..+.++.+.............. ....+.....++..++.+|..+|++++|...
T Consensus 279 ~~-----~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 279 EL-----QPGYIRSRYNLGIS-CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HH-----CTTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred Hh-----CCCcHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 75 45555443333322 344444554443332211111000 0111233467899999999999999999999
Q ss_pred HHHHHHHhcccc
Q 000191 1166 KTYVAKVKGNFY 1177 (1888)
Q Consensus 1166 yeKALeL~dSi~ 1177 (1888)
++++++.....+
T Consensus 353 ~~~~l~~~~~~~ 364 (368)
T 1fch_A 353 DARDLSTLLTMF 364 (368)
T ss_dssp HTTCHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999998877655
No 24
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=7.3e-15 Score=157.21 Aligned_cols=166 Identities=16% Similarity=0.177 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+..+|++++|+.+|++++++ +|....++..||.+|..+|++++|+..+.+++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------- 68 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------- 68 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 456889999999999999999999999987 5666789999999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+....++..+|.++...++++.|+.++.+++.+ +|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--- 137 (184)
T 3vtx_A 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--- 137 (184)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---
Confidence 3556778899999999999999999999999986 34456778899999999999999999999999873
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+....+++++|.+|..+|++++|+.+|++|+++
T Consensus 138 -----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 -----PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -----chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 345678999999999999999999999999975
No 25
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=2.6e-15 Score=197.23 Aligned_cols=172 Identities=23% Similarity=0.291 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|.++..+|++++|+.+|++|+++ +|..+.++.+||.+|..+|++++|+.+|++|+.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l------ 72 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI------ 72 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 45788999999999999999999999999988 5677889999999999999999999999999997
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+|+...+|++||.+|..+|++++|+++|++|+++ +|..+.+++++|.+|..+|++++|+.+|++|+++.
T Consensus 73 --~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~- 141 (723)
T 4gyw_A 73 --SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK- 141 (723)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5677889999999999999999999999999986 46667889999999999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
+....++.+||.+|..+|++++|++.+++++++....
T Consensus 142 -------P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 142 -------PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp -------SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred -------CCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 3456789999999999999999999999999887554
No 26
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.65 E-value=5.6e-15 Score=173.41 Aligned_cols=182 Identities=14% Similarity=0.092 Sum_probs=153.8
Q ss_pred HcCChHHHHHHHHHHHHHHHH-hc--CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVA-VC--GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 981 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eq-i~--G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~ 981 (1888)
..|++++|..++++|...... .+ +.+....+..|...|.+|..+|++++|+.+|++|+.+..+. .+....+.+|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~ 80 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFE 80 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 457889999999999887653 23 34555566788888999999999999999999999998874 34556788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000191 982 DLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 1061 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA 1061 (1888)
++|.+|..+|++++|+.+|++|+.++... .+....+.++.++|.+|.. |++++|+.+|++|+++.... .+....+
T Consensus 81 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~ 155 (307)
T 2ifu_A 81 QAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAA 155 (307)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHH
Confidence 99999999999999999999999998653 2334567899999999999 99999999999999998764 2344567
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1062 ASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1062 ~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.++.++|.+|..+|+|++|+.+|++++.+...
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988754
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.64 E-value=2.8e-15 Score=172.48 Aligned_cols=239 Identities=10% Similarity=0.017 Sum_probs=182.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-dyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
++..+..++..|++++|+.++++++.. +|....++..+|.+|..+| ++++|+.++++++.+ .+
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~ 122 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDL--------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EK 122 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CC
Confidence 344567778999999999999999986 3445678999999999999 999999999999875 34
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
....++..+|.+|...|++++|+.+|++++.+. |....++.++|.+|...|++++|+.+|++++++.
T Consensus 123 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----- 189 (330)
T 3hym_B 123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--------KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA----- 189 (330)
T ss_dssp TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----
Confidence 556789999999999999999999999999863 2334557779999999999999999999998763
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCc
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD-LRTQDAAAWLE--YFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh-~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
+....++..+|.+|...|++++|+.++++++.+.....+... +....+...++ +...+.++.+..........
T Consensus 190 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~- 265 (330)
T 3hym_B 190 ---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL- 265 (330)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-
Confidence 234577889999999999999999999999988755433221 11112223333 33444445444333221110
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
.+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 266 -------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 266 -------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp -------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred -------CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 012245789999999999999999999999987653
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=8.5e-15 Score=178.90 Aligned_cols=241 Identities=10% Similarity=0.051 Sum_probs=189.4
Q ss_pred hcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Q 000191 886 AACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD-FNQATIYQQKALDI 964 (1888)
Q Consensus 886 ~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd-yeeAl~~~eKAL~I 964 (1888)
+......+..++.+|.++...|++++|+.+|++++.+ +|....+|+++|.+|..+|+ +++|+.++++|+.+
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l 161 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 161 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 3455667888899999999999999999999999987 67778899999999999997 99999999999997
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000191 965 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHK 1044 (1888)
Q Consensus 965 ~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~Lek 1044 (1888)
+|....+|+++|.+|..+|++++|+.+|++|+.+ +|....+++++|.+|..+|++++|+.+|++
T Consensus 162 --------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 162 --------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp --------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5777889999999999999999999999999986 466678899999999999999999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--H
Q 000191 1045 ALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLS-----VQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK--A 1116 (1888)
Q Consensus 1045 ALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeA-----le~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk--a 1116 (1888)
++++. +....+++++|.+|.. .|.+++| +.++++|+.+ .+++......+.++... .+ .
T Consensus 226 al~l~--------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l~~ll~~-~g~~~ 291 (382)
T 2h6f_A 226 LLKED--------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYLKGILQD-RGLSK 291 (382)
T ss_dssp HHHHC--------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHTT-TCGGG
T ss_pred HHHhC--------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHc-cCccc
Confidence 99873 4456789999999999 5555888 4888888864 57776544443333221 11 1
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HHHh
Q 000191 1117 FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKG--------R-NVSTLKRKTYV-AKVK 1173 (1888)
Q Consensus 1117 ~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qG--------d-yeEAleyyeKA-LeL~ 1173 (1888)
.+.+....... ...+....++..+|.+|..+| + +++|+.+|+++ +++.
T Consensus 292 ~~~a~~~~~~~---------~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 292 YPNLLNQLLDL---------QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp CHHHHHHHHHH---------TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHh---------ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 22222221111 112233567889999998874 3 58899999988 5543
No 29
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=4.7e-14 Score=169.24 Aligned_cols=213 Identities=15% Similarity=0.117 Sum_probs=175.1
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..++.+|.++...|++++|+.++++|+.++... +...+..+.++.+||.+|..+|++++|+.++++|+.+.++.
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 44568889999999999999999999999999998775 33367788999999999999999999999999999998874
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+.+..+.++.+||.+|..+|++++|+.+|++|+.+..... +.+..+.++.++|.+|..+|++++|+.++++|+++
T Consensus 218 --~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 218 --KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45677789999999999999999999999999999987642 22777899999999999999999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000191 1049 NQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 1115 (1888)
Q Consensus 1049 ~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk 1115 (1888)
..... .+.....+..+|.+|...|++ ..+++|+.++++. ...+....+...|+.+...
T Consensus 294 ~~~~~---~~~~~~~~~~l~~~~~~~~~~----~~~~~al~~~~~~--~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 294 SQKAG---DVIYLSEFEFLKSLYLSGPDE----EAIQGFFDFLESK--MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHT---CHHHHHHHHHHHHHHTSSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH
T ss_pred HHHcC---CHHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHH
Confidence 87752 233333467799999999996 4566667666655 3444555555556544443
No 30
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.63 E-value=8.7e-15 Score=168.41 Aligned_cols=243 Identities=12% Similarity=0.096 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..++..|++++|+.+|++++.. +|....++..++.+++.+|++++|+.++++++.. +
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~ 86 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDL--------Y 86 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--------C
Confidence 44667788999999999999999999876 3344457788899999999999999999999986 3
Q ss_pred hhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 974 PDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lG-dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
|....++..+|.+|...| ++++|+.+|++++.+ .|....++.++|.+|...|++++|+.+|++++++.
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--- 155 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--- 155 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---
Confidence 555678999999999999 999999999999874 24445678899999999999999999999999874
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
++ ....+..+|.+|...|++++|+.++++++.+ .+++......+..+ +...+.++.+............
T Consensus 156 --~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 156 --KG---CHLPMLYIGLEYGLTNNSKLAERFFSQALSI-----APEDPFVMHEVGVV-AFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp --TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHT
T ss_pred --cc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CCCChHHHHHHHHH-HHHcccHHHHHHHHHHHHHHhh
Confidence 22 2345677999999999999999999999854 45665444333332 3333444444333221110000
Q ss_pred hhh-hcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1133 SIA-SKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1133 ~~a-s~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
... ....+....++..+|.+|..+|++++|+.+|++++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 000 001123346889999999999999999999999998854
No 31
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=1.9e-14 Score=171.38 Aligned_cols=274 Identities=9% Similarity=-0.048 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..+...|++++|+.++++++.+.... .+....+.++.++|.+|..+|++++|+.++++++.+.++..+.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 129 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH--DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 129 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 45567888999999999999999999999987764 2334456788999999999999999999999999999886655
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+++....++.++|.+|..+|++++|+.++++++.+.... + ++..+.++.++|.++...|++++|+.++++++.+...
T Consensus 130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-Q--PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-C--GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc-C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 567788899999999999999999999999999886542 2 2345678899999999999999999999999988644
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCC
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~ 1129 (1888)
. +......+.....++.++...|++++|..++++++.+. .+..+... .....++ ++..+..+.+.........
T Consensus 207 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 207 G-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE---FANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp S-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC---CTTCGGGH-HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred c-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC---CCcchhhH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 11111222223345667889999999999998887532 11111111 1122222 2333334433322221110
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1130 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
............+++..++.+|..+|++++|..+|++++.+....+
T Consensus 282 --~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g 327 (373)
T 1hz4_A 282 --NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 327 (373)
T ss_dssp --HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc
Confidence 0001111123456888999999999999999999999999987643
No 32
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.63 E-value=6.3e-14 Score=162.55 Aligned_cols=244 Identities=17% Similarity=0.090 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
++..++.+|..++..|++++|+.+|++++.. .|....++..+|.+|..+|++++|+.++++++.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 3567889999999999999999999999986 3455679999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH------------HHHHHHCCCHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV------------AMMEEGLGNVHVAL 1039 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NL------------A~iy~~lG~yeeAl 1039 (1888)
.|....++..+|.+|...|++++|+.+|++++.+ .+.......++..+ |.++...|++++|+
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 3555688999999999999999999999999874 22000333444444 89999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 000191 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQ 1119 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~ 1119 (1888)
.+|+++++.. + ....++..+|.+|...|++++|+.++++++.+ .+++......+..+ +...+..+.
T Consensus 141 ~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~-~~~~~~~~~ 206 (359)
T 3ieg_A 141 TFLDKILEVC-----V---WDAELRELRAECFIKEGEPRKAISDLKAASKL-----KSDNTEAFYKISTL-YYQLGDHEL 206 (359)
T ss_dssp HHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CSCCHHHHHHHHHH-HHHHTCHHH
T ss_pred HHHHHHHHhC-----C---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH-HHHcCCHHH
Confidence 9999999873 2 23467889999999999999999999999854 56666544333322 334444444
Q ss_pred HHHHHhcCCCCchhhhhcCCccHH---------HHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1120 QEAARNGTRKPDASIASKGHLSVS---------DLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1120 AeAl~~~~~~~~~~~as~~~~sva---------elL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
+......... ..+...... .....+|.++...|++++|+.+|++++++...
T Consensus 207 A~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 207 SLSEVRECLK-----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHh-----hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 4433322110 011111111 12335588899999999999999999987643
No 33
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.63 E-value=2.5e-14 Score=171.85 Aligned_cols=201 Identities=11% Similarity=0.018 Sum_probs=168.2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..++.+|.++...|++++|+.++++|+.++... +...+..+.++.+||.+|..+|++++|+.++++|+.+.++.
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 35568889999999999999999999999999998764 22244678999999999999999999999999999998774
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+....+.++.+||.+|..+|++++|+.+|++|+.+.... .+|..+.++.++|.+|..+|++++|+.++++|+++
T Consensus 216 --~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 216 --QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445677899999999999999999999999999998765 35667899999999999999999999999999997
Q ss_pred HHHhc------------------CC---------------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1049 NQRLL------------------GP---------------DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1049 ~ek~~------------------G~---------------d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..... +. ..+....++..+|.+|...|++++|+.++++++++.++..
T Consensus 291 ~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 291 ITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp CCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 53321 11 2234455667788888888888888888888888776654
No 34
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.62 E-value=1.7e-14 Score=167.67 Aligned_cols=194 Identities=12% Similarity=0.032 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM---TAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe---~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
.....+.+.+..++..|++++|+.++++++... ...+. .+..+..+|.+|...|++++|+.++++|+.+...
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc
Confidence 335556667788999999999999999998742 22232 2456667999999999999999999999986432
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000191 968 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALe 1047 (1888)
..+....+.++++||.+|..+|++++|+.+|++|+.++... ..+++..+.+++|+|.+|..+|+|++|+.++++|++
T Consensus 148 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 148 --GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp --CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 23334456789999999999999999999999999988774 336778888999999999999999999999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHh
Q 000191 1048 CNQRLLGPDHIQTAASYHAIAIALSLMEA-YPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1048 i~ek~~G~d~~~tA~al~nLA~ay~~lGd-ydeAle~lqkALeI~kk~ 1094 (1888)
+.... .+....+.+++++|.+|..+|+ +++|+.++++|+.+++..
T Consensus 225 ~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 225 ISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHT--TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHc--CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 98775 3455678999999999999995 699999999999998754
No 35
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.62 E-value=4.3e-14 Score=174.92 Aligned_cols=246 Identities=13% Similarity=0.059 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..+...|++++|+.+|++++.+ .|. ..++..+|.+|..+|++++|+.++++++.+
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 305 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL--------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL------ 305 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc------
Confidence 34677889999999999999999999999987 344 678999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+....++.++|.+|...|++++|+.+|++++.+ . |....++.++|.+|..+|++++|+.+|+++++..
T Consensus 306 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 306 --NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-----N---PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3556778999999999999999999999999985 2 3334678899999999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----------HHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES----------KAFEQQ 1120 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q----------ka~e~A 1120 (1888)
++ ...++..+|.+|...|++++|+.++++++.+....................+... +.++.+
T Consensus 375 ----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 375 ----PT---LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp ----TT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred ----CC---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 22 3457888999999999999999999999988755432221111111111122233 444444
Q ss_pred HHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1121 EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1121 eAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.......... .+....++..+|.+|..+|++++|+.+|++++++.....
T Consensus 448 ~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 448 IKLLTKACEL--------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 4433321110 112346789999999999999999999999999876643
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=6.1e-14 Score=156.54 Aligned_cols=205 Identities=18% Similarity=0.100 Sum_probs=174.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------- 100 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-------- 100 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 778899999999999999999999999987 3445678999999999999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+....++.++|.+|...|++++|+.+|++++. .+.+|....++.++|.+|...|++++|+.+|+++++..
T Consensus 101 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 171 (252)
T 2ho1_A 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--- 171 (252)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 344577899999999999999999999999986 23467778899999999999999999999999999863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDA 1132 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~ 1132 (1888)
+. ...++..+|.+|..+|++++|+.++++++.+ .+++
T Consensus 172 --~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~--------------------------------- 208 (252)
T 2ho1_A 172 --RN---QPSVALEMADLLYKEREYVPARQYYDLFAQG-----GGQN--------------------------------- 208 (252)
T ss_dssp --SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCCC---------------------------------
T ss_pred --cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCc---------------------------------
Confidence 22 3567889999999999999999998877632 1211
Q ss_pred hhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1133 SIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1133 ~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
...+..++.+|...|++++|..++++++++...
T Consensus 209 ----------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 209 ----------ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp ----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 124667788888999999999999999887543
No 37
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.62 E-value=6.7e-14 Score=162.32 Aligned_cols=240 Identities=15% Similarity=0.086 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..++..|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+.++++++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 100 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-------- 100 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Confidence 457788899999999999999999999987 3455578999999999999999999999999875
Q ss_pred Ch---hhHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000191 973 HP---DTMKSYGDL------------AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1037 (1888)
Q Consensus 973 hp---~ta~ay~nL------------A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yee 1037 (1888)
.+ ....++..+ |.++...|++++|+.++++++.. .|....++.++|.+|..+|++++
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 172 (359)
T 3ieg_A 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--------CVWDAELRELRAECFIKEGEPRK 172 (359)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHH
Confidence 23 334444444 89999999999999999999975 23445778999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------
Q 000191 1038 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL-------- 1109 (1888)
Q Consensus 1038 Ale~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L-------- 1109 (1888)
|+.+|+++++.. + ....++..+|.+|...|++++|+.++++++++ .+++.........+
T Consensus 173 A~~~~~~~~~~~-----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 173 AISDLKAASKLK-----S---DNTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHHHHTTC-----S---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CccchHHHHHHHHHHHHHHHHH
Confidence 999999998752 2 34467889999999999999999999999865 46665544332221
Q ss_pred -H--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1110 -E--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1110 -a--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
+ ++..+.++.+......... ....+......++..+|.+|..+|++++|+.+|++++++.
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 302 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMK----TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 1 2333334433332221110 0011111234567778888888999999999998888873
No 38
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.62 E-value=4.6e-14 Score=160.30 Aligned_cols=202 Identities=19% Similarity=0.168 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.. .+.++....+++.+|.+|+.+|++++|+.+|++++.+ .+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~p 83 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI-----YQ 83 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-----CC
Confidence 3678899999999999999999999999876 2456666889999999999999999999999999987 35
Q ss_pred CChhhHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--------------HHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYR--------LQHTELALKYVKRALYLLHLTCGPSHPNTAATY--------------INVAMME 1029 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~--------lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~--------------~NLA~iy 1029 (1888)
+++....+++++|.+|.. +|++++|+.+|++++.. .++++....++ .++|.+|
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----YPNHELVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999 99999999999999986 35555555555 8899999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1030 EGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM----------EAYPLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1030 ~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l----------GdydeAle~lqkALeI~kk~LG~dh 1099 (1888)
..+|++++|+.+|+++++.. +++.....+++.+|.+|..+ |++++|+.+|+++++. .+++
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 228 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-----FPDS 228 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-----CTTC
T ss_pred HHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-----CCCC
Confidence 99999999999999999874 55666788999999999977 8999999999998865 4778
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000191 1100 LRTQDAAAWLEYFESKAFE 1118 (1888)
Q Consensus 1100 ~~tl~a~~~La~L~qka~e 1118 (1888)
+....+...+..+......
T Consensus 229 ~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7777777777766554443
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=1.1e-14 Score=160.77 Aligned_cols=205 Identities=15% Similarity=0.146 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 86 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALEL------ 86 (243)
T ss_dssp ---------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 34677888999999999999999999999874 4455778999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+....++..+|.+|..+|++++|+.+|++++.+. |....++.++|.+|..+|++++|+.+|+++++..
T Consensus 87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 155 (243)
T 2q7f_A 87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN- 155 (243)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 34567889999999999999999999999999862 2335678899999999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
+ ....++..+|.+|...|++++|+.++++++.. .+++
T Consensus 156 ----~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~------------------------------- 192 (243)
T 2q7f_A 156 ----E---NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ-----DPGH------------------------------- 192 (243)
T ss_dssp ----T---TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----CTTC-------------------------------
T ss_pred ----C---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----Cccc-------------------------------
Confidence 2 23457889999999999999999999888753 1111
Q ss_pred chhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1131 DASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1131 ~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
..++..+|.+|..+|++++|+.+|++++++...
T Consensus 193 ------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 193 ------------ADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp ------------HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred ------------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 235788999999999999999999999987644
No 40
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=9.5e-15 Score=172.79 Aligned_cols=256 Identities=10% Similarity=-0.044 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+...|++++|+.+|++++.+ +|....++..||.+|..+|++++|+.++++++.+........
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLEL--------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence 556888999999999999999999999987 455578999999999999999999999999999754422111
Q ss_pred Ch--hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 973 HP--DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 973 hp--~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.. .....+..+|.+|...|++++|+.+|++++.+ .++.. ...++.++|.+|..+|++++|+.+|++++++.
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 243 (365)
T 4eqf_A 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-----NGDMI-DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR- 243 (365)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHH-----SCSSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-----CcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 10 12345567899999999999999999999986 22211 35678999999999999999999999999873
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKP 1130 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~ 1130 (1888)
+....++.++|.+|...|++++|+.++++++++ .+++......+..+ +...+.++.+..........
T Consensus 244 -------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 244 -------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-----QPGFIRSRYNLGIS-CINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHHTCCHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCchHHHHHHHHH-HHHCCCHHHHHHHHHHHHHh
Confidence 234568899999999999999999999999976 45555443333222 33334444443332211111
Q ss_pred chhhhh----cCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1131 DASIAS----KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1131 ~~~~as----~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
...... ........++..++.++...|+.+.|....++.+......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~~~ 360 (365)
T 4eqf_A 311 QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRA 360 (365)
T ss_dssp HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGTTT
T ss_pred CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHHHh
Confidence 100000 0111235689999999999999999998888766655443
No 41
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.61 E-value=5e-14 Score=164.14 Aligned_cols=192 Identities=10% Similarity=-0.077 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..+...|..|...|++++|+.+|++|+.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.+..+. .+.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~ 113 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQF 113 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCH
Confidence 344455678889999999999999999998765 3445668899999999999999999999999999998763 234
Q ss_pred hhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 974 PDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~l-GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
...+.++.+||.+|..+ |++++|+.+|++|+.+.... .+......++.++|.+|..+|+|++|+.+|++++++....
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 45678999999999996 99999999999999997652 1223446789999999999999999999999999875322
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
+........++.++|.+|..+|++++|+.++++++++..
T Consensus 192 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 192 -RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp -TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred -CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 111123456889999999999999999999999987643
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=2.9e-14 Score=174.34 Aligned_cols=246 Identities=15% Similarity=0.091 Sum_probs=179.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHHHH
Q 000191 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-DHPDTMKSYGDLAV 985 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~-Dhp~ta~ay~nLA~ 985 (1888)
++.+.++..+++.+...... .++...+.+|++||.+|+.+|++++|+.+|++|+.+.+...+. .++..+.+|.|||.
T Consensus 25 ~~~~~~l~~~e~~~~~~~~~--~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~ 102 (472)
T 4g1t_A 25 MEGENSLDDFEDKVFYRTEF--QNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAW 102 (472)
T ss_dssp TTTCCCHHHHHHHHHHHTTS--CC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence 44555666666666554333 2344557889999999999999999999999999998876543 36788899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000191 986 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--GNVHVALRYLHKALKCNQRLLGPDHIQTAAS 1063 (1888)
Q Consensus 986 ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l--G~yeeAle~LekALei~ek~~G~d~~~tA~a 1063 (1888)
+|..+|++++|+.+|++++.+.....+..++..+.++.++|+++... ++|++|+.+|++|+++. ++++. +
T Consensus 103 ~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~~~---~ 174 (472)
T 4g1t_A 103 VYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKNPE---F 174 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTCHH---H
T ss_pred HHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCCHH---H
Confidence 99999999999999999999999988888888888999999887764 57999999999999874 45544 4
Q ss_pred HHHHHHH---HHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHH--HHHHHHHHHHHHhcCCCCchhhhhc
Q 000191 1064 YHAIAIA---LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL-EYF--ESKAFEQQEAARNGTRKPDASIASK 1137 (1888)
Q Consensus 1064 l~nLA~a---y~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L-a~L--~qka~e~AeAl~~~~~~~~~~~as~ 1137 (1888)
+..+|.+ +...+++++|++.+++|+++ .+++......+... ..+ ..+..+.+....... ..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l-----~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a--------l~ 241 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRL-----NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA--------LE 241 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHH-----CSSCHHHHHHHHHHHHHCC------CHHHHHHHHH--------HH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhc-----CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--------HH
Confidence 4455555 44568889999999999865 56665543332211 111 112222232222211 11
Q ss_pred CCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1138 GHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1138 ~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
..+....++..+|.+|..+|++++|+.+|++++++...
T Consensus 242 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 12244567899999999999999999999999987654
No 43
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=3.4e-14 Score=165.07 Aligned_cols=195 Identities=12% Similarity=0.023 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
....+...+..++..|++++|+.++.+++...... ......+..+..+|.+|..+|++++|+.++++|+.+... ..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~ 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT--GI 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC--SS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--CC
Confidence 35667788899999999999999999998863210 112234566788999999999999999999999987543 23
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~-a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
+....+.+|+++|.+|..+|++++|+.+|++|+.+..... +.+.. +.+++|+|.+|..+|+|++|+.+|++|+++..
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444578999999999999999999999999999887642 23333 37899999999999999999999999999985
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLS-VQHEQTTLQILRAK 1094 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeA-le~lqkALeI~kk~ 1094 (1888)
.. .+....+.+++++|.+|..+|++++| ..++++|+.+++..
T Consensus 228 ~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 228 RI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 43 34455788999999999999999999 88899999998654
No 44
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.59 E-value=5.7e-14 Score=164.84 Aligned_cols=185 Identities=10% Similarity=-0.015 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+...|..|..+|++++|+.+|.+++.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.++.+. .+..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~ 113 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN--RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN--GTPD 113 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT--TCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc--CCHH
Confidence 34444688899999999999999999998775 3455678899999999999999999999999999998763 2334
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+.++.+||.+|.. |++++|+.+|++|+.+.... .+....+.++.++|.+|..+|+|++|+.+|++++++....
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 188 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-- 188 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--
Confidence 567899999999999 99999999999999998763 2234557889999999999999999999999999998765
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
......+.++.++|.+|..+|++++|+.++++++
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2244566788999999999999999999999988
No 45
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.59 E-value=6.8e-14 Score=163.05 Aligned_cols=227 Identities=10% Similarity=-0.005 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+|...|.+|..+|++++|+.+|++|+.+..+. .+....+.+|.++|.+|..+|++++|+.+|++|+.+.... .+.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~ 113 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR--GQF 113 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--CCH
Confidence 344445778889999999999999999998774 2445678999999999999999999999999999998763 233
Q ss_pred hhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1016 PNTAATYINVAMMEEGL-GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~l-G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
...+.++.++|.+|... |++++|+.+|++|+++.... .+....+.++.++|.+|..+|+|++|+.+|++++.+....
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC
Confidence 45678899999999996 99999999999999998653 2233456789999999999999999999999999764211
Q ss_pred cCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHH--HcCChHHHHHHHHHHH
Q 000191 1095 LGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHD--TKGRNVSTLKRKTYVA 1170 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~--~qGdyeEAleyyeKAL 1170 (1888)
+........++..++ ++..+.++.+...........+.... ......+..++..|. ..+++++|+..|++++
T Consensus 192 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 192 -RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD---SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp -TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred -CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC---cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 000011222333333 44455666666555544333322111 112334556666664 4677888888886665
Q ss_pred HH
Q 000191 1171 KV 1172 (1888)
Q Consensus 1171 eL 1172 (1888)
.+
T Consensus 268 ~l 269 (292)
T 1qqe_A 268 RL 269 (292)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=2.2e-14 Score=188.36 Aligned_cols=176 Identities=19% Similarity=0.182 Sum_probs=155.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+|..+.+|++||.+|..+|++++|+.+|++|+++ +|+...+|++||.+|..+|++++|+.+|++|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--- 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--- 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 36788899999999999999999999999999997 5777899999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+|+.+.+++++|.+|..+|++++|+.+|++|+++. +..+.++++||.+|..+|++++|+.+|++|++
T Consensus 73 -----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 73 -----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN--------PAFADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46667889999999999999999999999999873 44577899999999999999999999999985
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1090 ILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1090 I~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
+ .+++ .+++.++|.+|..+|++++|.++|+++
T Consensus 140 l-----~P~~-------------------------------------------~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 140 L-----KPDF-------------------------------------------PDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp H-----CSCC-------------------------------------------HHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred h-----CCCC-------------------------------------------hHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 4 2332 235778899999999999999999999
Q ss_pred HHHhcccc
Q 000191 1170 AKVKGNFY 1177 (1888)
Q Consensus 1170 LeL~dSi~ 1177 (1888)
+++.....
T Consensus 172 l~l~~~~~ 179 (723)
T 4gyw_A 172 VSIVADQL 179 (723)
T ss_dssp HHHHHHHH
T ss_pred HHhChhHH
Confidence 99876643
No 47
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.59 E-value=1.5e-13 Score=147.93 Aligned_cols=179 Identities=16% Similarity=0.102 Sum_probs=149.5
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000191 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 982 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~n 982 (1888)
++..|++++|+.+++... .+....+.++..+|.+|..+|++++|+.++++++.++++. .+.+....++.+
T Consensus 2 ~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~ 71 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALL--------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQ 71 (203)
T ss_dssp -----CHHHHHHHHHHHH--------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhc--------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHH
Confidence 356899999998554331 1334668899999999999999999999999999998763 356778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 000191 983 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 1062 (1888)
Q Consensus 983 LA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~ 1062 (1888)
+|.+|..+|++++|+.++++++.+.... +.++...+.++.++|.+|..+|++++|+.++++++++.... .+....+.
T Consensus 72 l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~ 148 (203)
T 3gw4_A 72 VGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIAC 148 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHH
Confidence 9999999999999999999999998753 33334778899999999999999999999999999997664 34455678
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1063 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1063 al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
++.++|.+|..+|++++|+.++++++++++..
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999998764
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=2.7e-13 Score=147.12 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.++++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 71 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI------ 71 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh------
Confidence 45677888999999999999999999999986 3444678999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRL-QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~l-GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+....++.++|.+|... |++++|+.++++++. .+.+|....++.++|.+|...|++++|+.+|+++++..
T Consensus 72 --~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 143 (225)
T 2vq2_A 72 --KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143 (225)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred --CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344567889999999999 999999999999986 23457778889999999999999999999999998863
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP-DDLRTQDAAAWLEYFESKAFEQQEAARNGTR 1128 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~-dh~~tl~a~~~La~L~qka~e~AeAl~~~~~ 1128 (1888)
+. ...++..+|.+|...|++++|+.++++++.+. + ++..
T Consensus 144 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~--------------------------- 183 (225)
T 2vq2_A 144 -----PQ---FPPAFKELARTKMLAGQLGDADYYFKKYQSRV-----EVLQAD--------------------------- 183 (225)
T ss_dssp -----TT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----CSCCHH---------------------------
T ss_pred -----CC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCHH---------------------------
Confidence 22 34678899999999999999999999887542 2 2221
Q ss_pred CCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1129 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1129 ~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.+..++.++...|++++|..+++.++++.
T Consensus 184 ----------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 184 ----------------DLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp ----------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ----------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 23445556677888888888888777654
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=8e-14 Score=149.14 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+.+|.+||.+|..+|++++|+.+|++|+.+ +|....++.+||.+|..+|++++|+.++.+++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 4578999999999999999999999999987 5667889999999999999999999999999875
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.|....++.++|.++...++++.|+.++.+++.+. +....++..+|.+|..+|++++|+.+|++++++
T Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 69 -DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--------TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 24446678889999999999999999999999873 233467888999999999999999999988754
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1094 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1094 ~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.+++ ..++..+|.+|..+|++++|+.+|++|+++.
T Consensus 137 --~p~~-------------------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 137 --KPGF-------------------------------------------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp --CTTC-------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --cchh-------------------------------------------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 1221 2357889999999999999999999999986
Q ss_pred cc
Q 000191 1174 GN 1175 (1888)
Q Consensus 1174 dS 1175 (1888)
..
T Consensus 172 p~ 173 (184)
T 3vtx_A 172 EK 173 (184)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=1.4e-13 Score=156.73 Aligned_cols=224 Identities=15% Similarity=0.146 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~I~Er 967 (1888)
.+..++.+|..++..|++++|+.+|++++.. ....++.+||.+|.. .+++++|+.+|++|+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---
Confidence 3567889999999999999999999999872 223688999999999 99999999999999875
Q ss_pred hcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHH
Q 000191 968 ELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVAL 1039 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAl 1039 (1888)
+ ...++.+||.+|.. .+++++|+.+|++|+.. + ...++.++|.+|.. .+++++|+
T Consensus 72 --~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 72 --N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------K---YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp --T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred --C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------C---CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 1 46789999999999 99999999999999874 1 24678999999999 99999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--
Q 000191 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE-- 1113 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~-- 1113 (1888)
.+|++|++.. ...+++++|.+|.. .+++++|+.+++++++. ++. .+...++.+.
T Consensus 135 ~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~---~a~~~lg~~~~~ 194 (273)
T 1ouv_A 135 EYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KDS---PGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHH
T ss_pred HHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CCH---HHHHHHHHHHHc
Confidence 9999999741 24578899999999 99999999999999854 233 2334444333
Q ss_pred ----HHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHhcc
Q 000191 1114 ----SKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1114 ----qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~----qGdyeEAleyyeKALeL~dS 1175 (1888)
.+..+.+......... .++ ...+..+|.+|.. .+++++|+.+|++++++...
T Consensus 195 g~~~~~~~~~A~~~~~~a~~-------~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACE-------LEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHH-------TTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCCccHHHHHHHHHHHHh-------CCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 3344444433322110 111 4578999999999 99999999999999987544
No 51
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=4.4e-14 Score=162.32 Aligned_cols=240 Identities=14% Similarity=0.070 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..++..|++++|+.+|++++.. .|....++..+|.+|..+|++++|+.++++++.+ .
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~ 85 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 85 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------C
Confidence 44677889999999999999999999986 3556678999999999999999999999999987 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH----------HHHH-HH-HHHHCCCHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT----------YINV-AM-MEEGLGNVHVALRY 1041 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a----------~~NL-A~-iy~~lG~yeeAle~ 1041 (1888)
|....++..+|.+|...|++++|+.+|++++.+. +.+...... ...+ +. ++...|++++|+.+
T Consensus 86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TTTTTC--------------------CCTTSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 5567889999999999999999999999998752 222221111 1112 44 58888999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQE 1121 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~Ae 1121 (1888)
++++++.. + ....++..+|.+|...|++++|+.++++++++ .+++.........+ +...+..+.+.
T Consensus 161 ~~~~~~~~-----~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~~~~~~A~ 226 (327)
T 3cv0_A 161 LHAALEMN-----P---NDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPDDAQLWNKLGAT-LANGNRPQEAL 226 (327)
T ss_dssp HHHHHHHS-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHHH
T ss_pred HHHHHhhC-----C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH-HHHcCCHHHHH
Confidence 99999863 2 24567889999999999999999999999865 45555443333322 33344444444
Q ss_pred HHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1122 AARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1122 Al~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
......... .+....++..+|.+|..+|++++|+.+|++++.+....
T Consensus 227 ~~~~~a~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 227 DAYNRALDI--------NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHc--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 333221100 11234578999999999999999999999999987663
No 52
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.58 E-value=1.6e-13 Score=166.12 Aligned_cols=247 Identities=18% Similarity=0.106 Sum_probs=184.1
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 89 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL---- 89 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----
Confidence 3456788999999999999999999999999976 4455789999999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---hHH---------HHHHHHHHHHHHCCCHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP---NTA---------ATYINVAMMEEGLGNVH 1036 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP---~~a---------~a~~NLA~iy~~lG~ye 1036 (1888)
.|....++..+|.+|..+|++++|+.+|++++.+ .++++ ... ..+..+|.+|...|+++
T Consensus 90 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 90 ----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 3556788999999999999999999999999864 23333 111 12455688899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q 000191 1037 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA 1116 (1888)
Q Consensus 1037 eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka 1116 (1888)
+|+.+|++++++. + ....++..+|.+|...|++++|+.++++++.+. +++......+..+ +...+.
T Consensus 161 ~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~l~~~-~~~~g~ 226 (450)
T 2y4t_A 161 AAIAFLDKILEVC-----V---WDAELRELRAECFIKEGEPRKAISDLKAASKLK-----NDNTEAFYKISTL-YYQLGD 226 (450)
T ss_dssp HHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-----CSCHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHHHHHHhC-----C---CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHH-HHHcCC
Confidence 9999999999763 2 345678899999999999999999999998763 5555443333222 333444
Q ss_pred HHHHHHHHhcCCCCchhhhhcCCccHHHH---------HHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1117 FEQQEAARNGTRKPDASIASKGHLSVSDL---------LDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1117 ~e~AeAl~~~~~~~~~~~as~~~~svael---------L~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+.+......... ..++....... +..+|.++...|++++|+.+|++++++...
T Consensus 227 ~~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 227 HELSLSEVRECLK-----LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 4444433322110 01111111111 234489999999999999999999986543
No 53
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.58 E-value=1.1e-13 Score=167.65 Aligned_cols=242 Identities=14% Similarity=0.069 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..++..|++++|+.+|++++.+ .|....++..+|.+|..+|++++|+.+|++++.+ .++
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 126 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-----NPS 126 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Confidence 567788899999999999999999999987 3455678999999999999999999999999874 222
Q ss_pred Ch---hhH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 973 HP---DTM---------KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 973 hp---~ta---------~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
+. ... ..+..+|.++...|++++|+.+|++++.+ .|....++.++|.+|...|++++|+.
T Consensus 127 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 22 111 22456688899999999999999999975 24456778999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-----------
Q 000191 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL----------- 1109 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L----------- 1109 (1888)
+|+++++.. ++ ...++..+|.+|...|++++|+.++++++.+ .+++......+..+
T Consensus 199 ~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (450)
T 2y4t_A 199 DLKAASKLK-----ND---NTEAFYKISTLYYQLGDHELSLSEVRECLKL-----DQDHKRCFAHYKQVKKLNKLIESAE 265 (450)
T ss_dssp HHHHHHHHH-----CS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999874 22 3567889999999999999999999999854 46665544333111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1110 EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1110 a~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.++..+.++.+......... ....+......++..+|.+|...|++++|+.+|++++++
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMK----TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHH----HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 12233334333332221110 000111112346666777777777777777777777665
No 54
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.57 E-value=2e-14 Score=178.32 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+...++.++.....|+|++|+.+|+++|++.++++|++|+.++.++.+||.+|..+|+|++|+.+++++|.+.++++|.+
T Consensus 298 ~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 377 (433)
T 3qww_A 298 ARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377 (433)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 44555556666678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
||+++..|+|||.+|..+|+|++|+.+|++|+++++..+|++||.+..++.+|.
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998888764
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.57 E-value=1.3e-13 Score=152.90 Aligned_cols=181 Identities=12% Similarity=0.108 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++..|..++..|++++|+.+|++++.+.. +....+++++|.+|..+|++++|+.++++++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 36788999999999999999999999998721 023357778999999999999999999999975
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN----TAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~----~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+|....++.++|.+|..+|++++|+.+|++++.+. ++++. .+.++.++|.++..+|++++|+.+|++++++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 56678899999999999999999999999999862 34442 3477999999999999999999999999975
Q ss_pred HHHhcCCCcHH--HHHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHHHHHHHHhcCCCC
Q 000191 1049 NQRLLGPDHIQ--TAASYHAIAIALSLMEAY---------------------------PLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1049 ~ek~~G~d~~~--tA~al~nLA~ay~~lGdy---------------------------deAle~lqkALeI~kk~LG~dh 1099 (1888)
.+. ...+++++|.+|..+|+. ++|+.++++++++ .+++
T Consensus 147 --------~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-----~p~~ 213 (228)
T 4i17_A 147 --------TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-----SPNR 213 (228)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CTTC
T ss_pred --------CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCC
Confidence 345 678889999999888877 6677777766644 5666
Q ss_pred HHHHHHH
Q 000191 1100 LRTQDAA 1106 (1888)
Q Consensus 1100 ~~tl~a~ 1106 (1888)
......+
T Consensus 214 ~~~~~~l 220 (228)
T 4i17_A 214 TEIKQMQ 220 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6554443
No 56
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.56 E-value=3.5e-13 Score=166.80 Aligned_cols=94 Identities=22% Similarity=0.214 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 88 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEI------ 88 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 45788999999999999999999999999987 4556789999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYV 1000 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~ 1000 (1888)
+|....++..+|.+|..+|++++|+.+|
T Consensus 89 --~p~~~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 89 --KPDHSKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566788999999999999999998866
No 57
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.56 E-value=5.5e-14 Score=161.52 Aligned_cols=250 Identities=12% Similarity=0.023 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..+...|++++|+.++++++.+ .+....++..+|.+|..+|++++|+.++++++... ++
T Consensus 55 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~ 121 (327)
T 3cv0_A 55 EEAWRSLGLTQAENEKDGLAIIALNHARML--------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-----PQ 121 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----Cc
Confidence 456777899999999999999999999987 34556789999999999999999999999998762 22
Q ss_pred ChhhHHHH----------HHH-HH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 973 HPDTMKSY----------GDL-AV-FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 973 hp~ta~ay----------~nL-A~-ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
+......+ ..+ +. ++...|++++|+.++++++.. .|....++..+|.+|...|++++|+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 22211111 122 44 588899999999999999975 23446788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000191 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ 1120 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~A 1120 (1888)
+|+++++.. + ....++..+|.+|...|++++|+.++++++++ .+++......+..+ ++..+..+.+
T Consensus 194 ~~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~-~~~~g~~~~A 259 (327)
T 3cv0_A 194 NLRRAVELR-----P---DDAQLWNKLGATLANGNRPQEALDAYNRALDI-----NPGYVRVMYNMAVS-YSNMSQYDLA 259 (327)
T ss_dssp HHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH-HHHTTCHHHH
T ss_pred HHHHHHHhC-----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH-HHHhccHHHH
Confidence 999999873 2 23567889999999999999999999999865 45555543333222 3344444444
Q ss_pred HHHHhcCCCCchhhhhcC----CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1121 EAARNGTRKPDASIASKG----HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1121 eAl~~~~~~~~~~~as~~----~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.................. ......++..++.+|..+|++++|..++++++++...-.
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhh
Confidence 433321110000000000 111567899999999999999999999999988876644
No 58
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.55 E-value=2.2e-13 Score=171.37 Aligned_cols=239 Identities=13% Similarity=0.087 Sum_probs=180.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
+..++..+...|++++|+.++++++.. .+....++..||.+|...|++++|+.+|++++.+ .+.
T Consensus 342 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~ 405 (597)
T 2xpi_A 342 YPLHLASLHESGEKNKLYLISNDLVDR--------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQ 405 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCC
Confidence 444566777788888888888887754 3445678899999999999999999999999886 355
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
...+|..+|.+|...|++++|+++|++++.+ . |....++..+|.+|...|++++|+.+|++++++. +
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~ 472 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARL-----F---QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-----Q 472 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C---ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C
Confidence 6778999999999999999999999999864 2 3345678889999999999999999999998763 3
Q ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCchh
Q 000191 1056 DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFESKAFEQQEAARNGTRKPDAS 1133 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~qka~e~AeAl~~~~~~~~~~ 1133 (1888)
. ...++..+|.+|...|++++|+.++++++++.... +.+.......+..++ +...+.++.+..........
T Consensus 473 ~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 545 (597)
T 2xpi_A 473 Y---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL--- 545 (597)
T ss_dssp C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred C---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---
Confidence 3 34568899999999999999999999999886542 222211123333333 33344445444333221100
Q ss_pred hhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1134 IASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1134 ~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+....++..++.+|...|++++|+.+|++++++...
T Consensus 546 -----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 546 -----STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp -----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 1123468999999999999999999999999998643
No 59
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.54 E-value=3.7e-14 Score=175.86 Aligned_cols=140 Identities=10% Similarity=0.052 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.....+..+|+|++|+.+++++|++.++++|++|+.++.++.+||.+|..+|+|++|+.++++++.++++++|.+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 44555556667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
||.++..|++||.+|..+|++++|+.+|++|+++++..+|++||.++.++.+|+.++..+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887654
No 60
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.54 E-value=7e-14 Score=173.44 Aligned_cols=122 Identities=16% Similarity=0.067 Sum_probs=118.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 947 ~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
..|+|++|+.+++++|.+.++++|.+|+.++.++++||.+|..+|+|++|+.++++++.++++.+|++||+++.+++|||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA 1068 (1888)
.+|..+|+|++|+.+|++|+++.+..+|++|+.++.++.+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999998887764
No 61
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.53 E-value=6.2e-13 Score=163.04 Aligned_cols=250 Identities=14% Similarity=0.019 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++... |. ..++..+|.+|..+|++++|+.++++++.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 68 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELK--------ED-PVFYSNLSACYVSVGDLKKVVEMSTKALEL------ 68 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------cc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc------
Confidence 457889999999999999999999999999872 32 578999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------------------hc----------------
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL-----------------------TC---------------- 1011 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k-----------------------i~---------------- 1011 (1888)
+|....++..+|.+|..+|++++|+.+|++++.+... .+
T Consensus 69 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 69 --KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp --CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 4666789999999999999999999999998764210 00
Q ss_pred --------CC------------------------CChhHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHhc--C
Q 000191 1012 --------GP------------------------SHPNTAATYINVAMMEEG---LGNVHVALRYLHKALKCNQRLL--G 1054 (1888)
Q Consensus 1012 --------G~------------------------dhP~~a~a~~NLA~iy~~---lG~yeeAle~LekALei~ek~~--G 1054 (1888)
.. ..|.....+..+|.++.. .|++++|+.+|+++++.+.... .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 00 002336677788888876 8999999999999999665443 2
Q ss_pred CCc----HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC
Q 000191 1055 PDH----IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES--KAFEQQEAARNGTR 1128 (1888)
Q Consensus 1055 ~d~----~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q--ka~e~AeAl~~~~~ 1128 (1888)
+++ +..+.+++.+|.+|...|++++|+.++++++.+ .++ . .+...++.+.. +..+.+........
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPR-V---NSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-----CCC-H---HHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----Ccc-H---HHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 333 667889999999999999999999999999865 344 2 33333333322 22222221111110
Q ss_pred CCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1129 KPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1129 ~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
...+....++..+|.+|...|++++|+.+|++++++..
T Consensus 298 --------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 298 --------KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp --------TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred --------hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 01112234678888888889999999999988887643
No 62
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.4e-13 Score=168.88 Aligned_cols=244 Identities=13% Similarity=0.045 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..+...|++++|+.+|++++.. .+. ..++..+|.+|..+|++++|+.++++++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 299 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL--------FPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL----- 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH--------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-----
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-----
Confidence 455778889999999999999999999999986 233 788999999999999999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+....++..+|.+|...|++++|+.+|++++.+ . |....++.++|.+|...|++++|+.+|+++++..
T Consensus 300 ---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 300 ---DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL-----D---PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT-----C---SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred ---CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----C---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 3445668999999999999999999999999875 2 3334578899999999999999999999999863
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHH---HHHHHHHHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLE--YFE---SKAFEQQEAAR 1124 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La--~L~---qka~e~AeAl~ 1124 (1888)
++ ...++..+|.+|...|++++|+.++++++.+........ ....+...++ ++. .+.++.+....
T Consensus 369 -----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 369 -----PE---APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp -----TT---CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred -----cc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 22 335788899999999999999999999998754321100 0011222333 233 34444444333
Q ss_pred hcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1125 NGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1125 ~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
...... .+....++..+|.+|..+|++++|+.+|++++++....
T Consensus 439 ~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 439 EKASKL--------DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482 (514)
T ss_dssp HHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcccc
Confidence 221100 11234678999999999999999999999999987653
No 63
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.53 E-value=5.1e-14 Score=165.55 Aligned_cols=240 Identities=13% Similarity=0.063 Sum_probs=170.4
Q ss_pred HHHHcCChHHHHH-HHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 902 TALDKGKLEDAVT-YGTKALAKLVAVCGPYHRM-TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 902 ~~l~qGd~dEAie-~~eeAL~l~eqi~G~dhpe-~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
.+...|+|++|+. .|++++.+ .+.++. .+..+..+|.+|+..|++++|+.++++++.+ +|....+
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~ 100 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQF-----EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHMEA 100 (368)
T ss_dssp ------------CHHHHCCCCC-----CSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhc-----CCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 4556789999999 88888754 223332 2467889999999999999999999999975 4566788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC----
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP---- 1055 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~---- 1055 (1888)
+.++|.+|..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++++.......
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 172 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 999999999999999999999999986 24456788999999999999999999999888643211000
Q ss_pred -------------------------------------CcHH--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC
Q 000191 1056 -------------------------------------DHIQ--TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1056 -------------------------------------d~~~--tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG 1096 (1888)
..+. .+.++..+|.+|...|++++|+.++++++.+ .
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~ 247 (368)
T 1fch_A 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----R 247 (368)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C
T ss_pred HHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C
Confidence 0111 3577889999999999999999999999876 4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1097 PDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1097 ~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
+++......+..+ +...+.++.+.......... .+....++..+|.+|..+|++++|+.+|++++++....
T Consensus 248 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 248 PNDYLLWNKLGAT-LANGNQSEEAVAAYRRALEL--------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp TTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5555433332222 33344444444333221110 12334678999999999999999999999999998765
No 64
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=1.3e-13 Score=153.76 Aligned_cols=163 Identities=21% Similarity=0.145 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-----------GDFNQATIYQQKA 961 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l-----------GdyeeAl~~~eKA 961 (1888)
...++.+|.++...|++++|+.+|++++.+ .|....++.+||.+|..+ |++++|+..++++
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 110 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDA 110 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHH
Confidence 566888899999999999999999999987 466678999999999999 9999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
+.+ .|....++.++|.+|..+|++++|+.+|++|+.+. + ...++.++|.+|..+|++++|+.+
T Consensus 111 l~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~---~~~~~~~la~~~~~~g~~~~A~~~ 173 (217)
T 2pl2_A 111 ERV--------NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE------D---TPEIRSALAELYLSMGRLDEALAQ 173 (217)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------C---CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHh--------CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc------c---chHHHHHHHHHHHHcCCHHHHHHH
Confidence 997 46677889999999999999999999999999872 2 346788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
|++++++. |....++.++|.+|..+|++++|+.+++++.
T Consensus 174 ~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 174 YAKALEQA--------PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHS--------TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999873 3445778899999999999999999998764
No 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.5e-12 Score=144.38 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI-------- 964 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I-------- 964 (1888)
...++.+|..+...|++++|+.++++++.+.... +.+.+..+.++..+|.+|..+|++++|+.++++++.+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 116 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence 4567888999999999999999999999986543 2344455789999999999999999999999999984
Q ss_pred -----------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 000191 965 -----------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 1033 (1888)
Q Consensus 965 -----------~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG 1033 (1888)
+++... ..+....++.++|.+|...|++++|+.+|++++.+ +|....++.++|.+|..+|
T Consensus 117 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~ 187 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEAY-VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLM 187 (258)
T ss_dssp HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhC
Confidence 122111 35778889999999999999999999999999986 2344578899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1034 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1034 ~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
++++|+.+|++++++. + ....++..+|.+|..+|++++|+.++++++++....
T Consensus 188 ~~~~A~~~~~~al~~~-----~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 240 (258)
T 3uq3_A 188 SFPEAIADCNKAIEKD-----P---NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240 (258)
T ss_dssp CHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-----H---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh
Confidence 9999999999999873 2 345678899999999999999999999999887554
No 66
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.52 E-value=3.2e-13 Score=169.91 Aligned_cols=243 Identities=12% Similarity=0.114 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
+...++.+|..+...|++++|+.+|++++.. + +....++..++.+|...|++++|+.++++++..
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 368 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEI-----D---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR------- 368 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc-----C---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-------
Confidence 4566788899999999999999999999876 2 233457889999999999999999999999854
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.+....++..||.+|...|++++|+.+|++++.+ .|....+++.+|.+|...|++++|+.+|+++++..
T Consensus 369 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 437 (597)
T 2xpi_A 369 -HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-- 437 (597)
T ss_dssp -CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--
T ss_pred -CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3556788999999999999999999999999875 34456788999999999999999999999998753
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPD 1131 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~ 1131 (1888)
++ ...++..+|.+|...|++++|+.++++++++ .+++..+...+..+ +...+.++.+..+........
T Consensus 438 ---~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 438 ---QG---THLPYLFLGMQHMQLGNILLANEYLQSSYAL-----FQYDPLLLNELGVV-AFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp ---TT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHH
T ss_pred ---cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHH-HHHhCCHHHHHHHHHHHHHhh
Confidence 22 3467888999999999999999999999865 46666554433332 334444555444333211100
Q ss_pred hhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1132 ASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1132 ~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
.. ..........++..++.+|...|++++|+.+|++++++.
T Consensus 506 ~~-~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 506 KK-TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH-SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hc-cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 00 011122236789999999999999999999999999875
No 67
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.51 E-value=9.6e-14 Score=172.11 Aligned_cols=130 Identities=17% Similarity=0.075 Sum_probs=125.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000191 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024 (1888)
Q Consensus 945 y~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~N 1024 (1888)
+..+|+|++|+.++++++.+.++++|.+|+.++.++.+||.+|..+|+|++|+.++++++.++++.+|++||.++..++|
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc
Q 000191 1025 VAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM 1074 (1888)
Q Consensus 1025 LA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l 1074 (1888)
||.+|..+|++++|+.+|++|+++.+..+|++|+.++.++.+|+.+...+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988654
No 68
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.51 E-value=6.7e-13 Score=135.42 Aligned_cols=157 Identities=22% Similarity=0.244 Sum_probs=138.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
....+.++..+|.+|+.+|++++|+.++++++.+.++. .+....+.++.++|.+|..+|++++|+.++++++.+....
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999999998774 3445667899999999999999999999999999998764
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.+.+..+.++.++|.+|..+|++++|+.++++++++.... .+....+.++..+|.+|..+|++++|+.++++++++
T Consensus 83 --~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 83 --KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445668889999999999999999999999999998765 345677889999999999999999999999999988
Q ss_pred HHH
Q 000191 1091 LRA 1093 (1888)
Q Consensus 1091 ~kk 1093 (1888)
+++
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 753
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=2e-13 Score=170.68 Aligned_cols=169 Identities=16% Similarity=0.108 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 892 DGRQLLESSKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~-dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
.+..++.+|..++..|++ ++|+.+|++|+.+ +|..+.++..||.+|+.+|++++|+.+|++|+.+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------ 166 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH------ 166 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 367788999999999999 9999999999987 4566789999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------C
Q 000191 971 LDHPDTMKSYGDLAVFYYRL---------QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--------G 1033 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~l---------GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l--------G 1033 (1888)
.|. ..++.+||.+|..+ |++++|+.+|++|+.+ +|....+++++|.+|..+ |
T Consensus 167 --~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 167 --CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp --CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred --CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 244 58899999999999 9999999999999986 355567899999999999 9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1034 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1034 ~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
++++|+.+|++|+++. +.....+.+++++|.+|..+|++++|+.+|++|+++
T Consensus 236 ~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999873 212256788999999999999999999999999865
No 70
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=9e-13 Score=148.14 Aligned_cols=230 Identities=12% Similarity=-0.030 Sum_probs=165.9
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
..|++++|+.+|++++... ....+..+.++..+|.+|..+|++++|+.++++++.+ +|....++.++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la 84 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASR----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLG 84 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcc----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHH
Confidence 4578999999999998751 1234677899999999999999999999999999987 355677899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 000191 985 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al 1064 (1888)
.+|...|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++. +++.. .+
T Consensus 85 ~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~---~~ 148 (275)
T 1xnf_A 85 IYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDPF---RS 148 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHH---HH
T ss_pred HHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCChH---HH
Confidence 9999999999999999999986 23345778999999999999999999999999864 33332 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHH
Q 000191 1065 HAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSD 1144 (1888)
Q Consensus 1065 ~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svae 1144 (1888)
..++ ++...|++++|+.++++++... +.+..... ... .++.....+.+............. ..+....
T Consensus 149 ~~~~-~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 216 (275)
T 1xnf_A 149 LWLY-LAEQKLDEKQAKEVLKQHFEKS-----DKEQWGWN-IVE-FYLGNISEQTLMERLKADATDNTS----LAEHLSE 216 (275)
T ss_dssp HHHH-HHHHHHCHHHHHHHHHHHHHHS-----CCCSTHHH-HHH-HHTTSSCHHHHHHHHHHHCCSHHH----HHHHHHH
T ss_pred HHHH-HHHHhcCHHHHHHHHHHHHhcC-----CcchHHHH-HHH-HHHHhcCHHHHHHHHHHHhccccc----ccccccH
Confidence 2223 4466799999999999888642 22221111 111 111111122222222221111111 0112357
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1145 LLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1145 lL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
++..+|.+|..+|++++|+.+|++++.+..
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 899999999999999999999999998754
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=1.1e-12 Score=137.23 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..+...|++++|+.++++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------- 71 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD------- 71 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------
Confidence 4667888999999999999999999998754 3445678999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.+....++.++|.+|...|++++|+.++++++.+ +|....++.++|.+|...|++++|+.+|+++++..
T Consensus 72 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 140 (186)
T 3as5_A 72 -APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-- 140 (186)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--
Confidence 3455778999999999999999999999999986 23445678899999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+. ...++..+|.+|...|++++|+.++++++++.
T Consensus 141 ---~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 141 ---PN---EGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp ---TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---cc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 22 35678899999999999999999999998765
No 72
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=2.1e-12 Score=142.40 Aligned_cols=179 Identities=20% Similarity=0.224 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..+...|++++|+.++++++.. .+....++..+|.+|..+|++++|+.++++++.+.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------- 121 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG------- 121 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------
Confidence 566788899999999999999999999987 34456789999999999999999999999999862
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+....++..+|.+|...|++++|+.++++++.+ .|....++.++|.+|...|++++|+.+|+++++..
T Consensus 122 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 189 (243)
T 2q7f_A 122 -MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--------NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD--- 189 (243)
T ss_dssp -CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC---
T ss_pred -CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 334668899999999999999999999999986 23345678899999999999999999999998863
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAW 1108 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~ 1108 (1888)
+ ....++..+|.+|...|++++|+.++++++++ .+++......+..
T Consensus 190 --~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 190 --P---GHADAFYNAGVTYAYKENREKALEMLDKAIDI-----QPDHMLALHAKKL 235 (243)
T ss_dssp --T---TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHTC
T ss_pred --c---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CcchHHHHHHHHH
Confidence 2 23557889999999999999999999999865 5677665544433
No 73
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.48 E-value=1.9e-12 Score=139.30 Aligned_cols=172 Identities=9% Similarity=-0.021 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..+...|++++|+.++++++.+.... .+.+..+.++.++|.+|..+|++++|+.++++++.++++. +.
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~ 101 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PE 101 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-Cc
Confidence 46778889999999999999999999999998765 3566778999999999999999999999999999998863 33
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+......++.++|.+|..+|++++|+.++++++.+.... .+....+.++.++|.+|..+|++++|+.++++++++.++
T Consensus 102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 333678899999999999999999999999999987663 233455778899999999999999999999999999877
Q ss_pred hcCCCcHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~a 1070 (1888)
. .+....+.++..++.+
T Consensus 180 ~--~~~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 180 L--EDSEAVNELMTRLNGL 196 (203)
T ss_dssp T--TCHHHHHHHHHHHHTT
T ss_pred c--CCHHHHHHHHhcccch
Confidence 6 3444555555555544
No 74
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.47 E-value=2.8e-12 Score=130.82 Aligned_cols=156 Identities=22% Similarity=0.218 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.++++++.+.... .+....+.++..+|.+|..+|++++|+.++++++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~- 82 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL- 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-
Confidence 3457788999999999999999999999999998775 3455667899999999999999999999999999998774
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+......++.++|.+|..+|++++|+.++++++.+.... .+++....++.++|.+|..+|++++|+.++++++++.
T Consensus 83 -~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 83 -KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3455667899999999999999999999999999998764 3456778899999999999999999999999999987
Q ss_pred HH
Q 000191 1050 QR 1051 (1888)
Q Consensus 1050 ek 1051 (1888)
++
T Consensus 160 ~~ 161 (164)
T 3ro3_A 160 RE 161 (164)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.46 E-value=7.3e-12 Score=138.79 Aligned_cols=200 Identities=11% Similarity=0.040 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+.++..+|.+|+.+|++++|+.+|++++.+.. +....++.++|.+|..+|++++|+.+|++++.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 36899999999999999999999999998731 133467788999999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI----QTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~----~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+|....++.++|.+|..+|++++|+.+|++++++. +++. ..+.++.++|.++..+|++++|+.++++++++
T Consensus 72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-----PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 46678899999999999999999999999999874 3333 24577999999999999999999999999854
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1091 LRAKLGPDDLRTQDAAAWLEYFESKAFEQ--QEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTY 1168 (1888)
Q Consensus 1091 ~kk~LG~dh~~tl~a~~~La~L~qka~e~--AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeK 1168 (1888)
.+++. ...+...++.+....... .++..... . . ...+.+......+.|++|+.+|++
T Consensus 147 -----~p~~~-~~~~~~~l~~~~~~~~~~~~~~a~~~~~---------~---~---~~~~~~~~~~~~~~~~~A~~~~~~ 205 (228)
T 4i17_A 147 -----TSKKW-KTDALYSLGVLFYNNGADVLRKATPLAS---------S---N---KEKYASEKAKADAAFKKAVDYLGE 205 (228)
T ss_dssp -----SCHHH-HHHHHHHHHHHHHHHHHHHHHHHGGGTT---------T---C---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCcc-cHHHHHHHHHHHHHHHHHHHHHHHhccc---------C---C---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23300 334455555444333322 11111110 0 1 122334445667889999999999
Q ss_pred HHHHhcc
Q 000191 1169 VAKVKGN 1175 (1888)
Q Consensus 1169 ALeL~dS 1175 (1888)
++++...
T Consensus 206 a~~l~p~ 212 (228)
T 4i17_A 206 AVTLSPN 212 (228)
T ss_dssp HHHHCTT
T ss_pred HhhcCCC
Confidence 9998654
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=5e-13 Score=167.06 Aligned_cols=217 Identities=16% Similarity=0.133 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 911 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF-NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 911 EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy-eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
.....+.+++..+.... ...+..+.+++.+|.+|..+|++ ++|+.+|++|+.+ .|....++++||.+|..
T Consensus 79 ~~~~~~~~al~~l~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~ 149 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVL-GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWK 149 (474)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHH
Confidence 44455666666655543 23456788999999999999999 9999999999987 46667899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 000191 990 LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHKALKCNQRLLGPDHIQT 1060 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l---------G~yeeAle~LekALei~ek~~G~d~~~t 1060 (1888)
+|++++|+.+|++|+.+ .|. ..++.++|.+|..+ |++++|+.+|++|+++. +..
T Consensus 150 ~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~ 212 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--------VLD 212 (474)
T ss_dssp HTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--------TTC
T ss_pred cCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--------CCC
Confidence 99999999999999975 244 48899999999999 99999999999999873 334
Q ss_pred HHHHHHHHHHHHHc--------CChHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000191 1061 AASYHAIAIALSLM--------EAYPLSVQHEQTTLQILRAKLGP---DDLRTQDAAAWLEYFESKAFEQQEAARNGTRK 1129 (1888)
Q Consensus 1061 A~al~nLA~ay~~l--------GdydeAle~lqkALeI~kk~LG~---dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~ 1129 (1888)
..+++++|.+|..+ |++++|+.+|++|+++ .+ ++......+..+ +...+.++.+.........
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV-----DRKASSNPDLHLNRATL-HKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-----CGGGGGCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh-----CCCcccCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH
Confidence 57889999999999 9999999999999976 34 343332222221 2233334443333222110
Q ss_pred CchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1130 PDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKT 1167 (1888)
Q Consensus 1130 ~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyye 1167 (1888)
. .+....++..++.++...|++++|+..+.
T Consensus 287 l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 287 L--------DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp H--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred h--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 11223567777777777777777776553
No 77
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.45 E-value=1.6e-12 Score=150.95 Aligned_cols=197 Identities=10% Similarity=-0.022 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
....+...+..+...|+|++|+.++++++..... ..+.......+..+|.+|...|++++|+.+|++|+.+.... .
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~ 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--I 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS--S
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC--C
Confidence 3456667888999999999999999999886321 01112344667789999999999999999999999864331 2
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
+....+.+++++|.+|..+|++++|+.+|++|+++.+... .+....+.+++++|.+|..+|+|++|+.++++|+.+...
T Consensus 150 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~-~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3344577999999999999999999999999999887652 222223479999999999999999999999999977421
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHH
Q 000191 1094 KLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVST-LKRKTYVAKV 1172 (1888)
Q Consensus 1094 ~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEA-leyyeKALeL 1172 (1888)
. ........++..+|.+|..+|++++| ..+|++|+.+
T Consensus 229 ~------------------------------------------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 229 I------------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp T------------------------------------------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred c------------------------------------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1 01123456799999999999999999 8899999999
Q ss_pred hcccc
Q 000191 1173 KGNFY 1177 (1888)
Q Consensus 1173 ~dSi~ 1177 (1888)
.+.+.
T Consensus 267 ~~~~~ 271 (293)
T 2qfc_A 267 FDILE 271 (293)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 98876
No 78
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.45 E-value=5.6e-12 Score=140.94 Aligned_cols=176 Identities=14% Similarity=0.094 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.. .+.++....++..+|.+|+.+|++++|+..|++++.. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 456888999999999999999999999986 2455666789999999999999999999999999986 456
Q ss_pred ChhhHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------
Q 000191 973 HPDTMKSYGDLAVFYYR------------------LQHTELALKYVKRALYLLHLTCGPSHPNTAA-------------- 1020 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~------------------lGdyeeALey~~kALeL~~ki~G~dhP~~a~-------------- 1020 (1888)
++....+++.+|.+|.. +|++++|+.+|++++.. -++++....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG-----YPNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT-----CTTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH-----CcCChhHHHHHHHHHHHHHHHHH
Confidence 66667789999999886 57899999999999874 244443322
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1021 TYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1021 a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
....+|.+|...|++++|+..|+++++.. ++++....+++.+|.+|..+|++++|+..++++.
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 22578999999999999999999999875 6667777899999999999999999999988665
No 79
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.45 E-value=4.9e-12 Score=146.90 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT---MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~t---a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
...+...+..+...|+|++|+.++++++... ...+.. +..+..+|.+|...+++++|+.+|++|+.+...
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-- 147 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-- 147 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc--
Confidence 3445566788899999999999999998742 223332 445667999999999999999999999985322
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
..+....+.+++++|.+|..+|++++|+.+|++|+++.... ..+....+.+++++|.+|..+|+|++|+.++++|+++.
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~ 226 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 22333457789999999999999999999999999988765 23667788899999999999999999999999999775
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 000191 1092 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGR-NVSTLKRKTYVA 1170 (1888)
Q Consensus 1092 kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGd-yeEAleyyeKAL 1170 (1888)
... .+....+.++..+|.+|..+|+ +++|+.+|++|+
T Consensus 227 ~~~------------------------------------------~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 227 CRI------------------------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHT------------------------------------------TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHc------------------------------------------CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 432 1122456789999999999995 699999999999
Q ss_pred HHhcccc
Q 000191 1171 KVKGNFY 1177 (1888)
Q Consensus 1171 eL~dSi~ 1177 (1888)
.+...++
T Consensus 265 ~i~~~~~ 271 (293)
T 3u3w_A 265 FFFDILE 271 (293)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9999876
No 80
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=3.1e-12 Score=154.67 Aligned_cols=236 Identities=8% Similarity=-0.032 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---------dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
..++.|+.+...|+|++|++.|.+++......... .......++..||.+|..+|++++|+.++.+++.+.
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35667888899999999999999999864322110 112345678999999999999999999999999987
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000191 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 966 Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
... .+......++.+++.++...|++++|+.++++++.+.... .+....+.++.++|.+|...|+|++|+.+++++
T Consensus 86 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 86 MQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 653 1223445677889999999999999999999999988774 345677899999999999999999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000191 1046 LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARN 1125 (1888)
Q Consensus 1046 Lei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~ 1125 (1888)
+...... .+....+.++..++.+|..+|+|++|..++++++.+......+ .
T Consensus 162 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~------------------------- 212 (434)
T 4b4t_Q 162 LREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP--T------------------------- 212 (434)
T ss_dssp HHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--H-------------------------
T ss_pred HHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc--h-------------------------
Confidence 9887654 4567788999999999999999999999999998776443111 0
Q ss_pred cCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1126 GTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1126 ~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.....++..+|.++...|+|.+|..+|.+++.......
T Consensus 213 --------------~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 213 --------------QTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp --------------HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred --------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 01234577788888889999999999999999887765
No 81
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=1.5e-12 Score=146.55 Aligned_cols=186 Identities=17% Similarity=0.149 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|.++...|++++|+.+|++++.+ ++....++..+|.+|..+|++++|+.++++++.+
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 137 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------- 137 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--------
Confidence 556788899999999999999999999987 3445578999999999999999999999999875
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN---VHVALRYLHKALKCN 1049 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~---yeeAle~LekALei~ 1049 (1888)
++....++.++|..++..+++++|+.+|++++.+ .|....++.++|.++..+|+ +++|+.+|++++++.
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 138 TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 4666788999995555667999999999999986 24446778899999999999 999999999999998
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
.............++..+|.+|...|++++|+.++++++++ .++++.......
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~l~ 262 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL-----DPTNKKAIDGLK 262 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHC
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CccHHHHHHHhh
Confidence 65422222345688999999999999999999999999965 577776554443
No 82
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=5.9e-12 Score=153.81 Aligned_cols=179 Identities=11% Similarity=0.046 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 893 GRQLLESSKTALDKGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd-~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
...++.+|.++...|+ +++|+.+|++++.+ +|....+|+++|.+|..+|++++|+.+|++||.+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l------- 195 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ------- 195 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 5567888999999997 99999999999987 5667789999999999999999999999999997
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHH-----HHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVA-----LRYLHKA 1045 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeA-----le~LekA 1045 (1888)
+|....+|+++|.++..+|++++|+.+|++++.+ +|....+++++|.+|.. .|.+++| +.+|++|
T Consensus 196 -dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~A 266 (382)
T 2h6f_A 196 -DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266 (382)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred -CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 5777899999999999999999999999999986 46667889999999999 5555888 5899999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000191 1046 LKCNQRLLGPDHIQTAASYHAIAIALSLME--AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1046 Lei~ek~~G~d~~~tA~al~nLA~ay~~lG--dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
+++. +....++++++.+|...| ++++|+..++++ ...+++......+..+
T Consensus 267 l~l~--------P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~------~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 267 IKLV--------PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL------QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHS--------TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH------TTTCCCHHHHHHHHHH
T ss_pred HHHC--------CCCHHHHHHHHHHHHccCccchHHHHHHHHHh------ccCCCCHHHHHHHHHH
Confidence 9873 344568899999999988 689998877653 3456666554444433
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.41 E-value=9.4e-12 Score=137.77 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHhcCCHHHHHH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSL----------------LAVVLYHTGDFNQATI 956 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~----------------LA~ly~~lGdyeeAl~ 956 (1888)
+..++..|..++..|++++|+.+|++++.+ +|....++.. +|.+|..+|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 467788999999999999999999999987 5666677777 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-
Q 000191 957 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV- 1035 (1888)
Q Consensus 957 ~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~y- 1035 (1888)
+|++++.+ +|....++.+||.+|..+|++++|+.+|++++.+ +|....+++++|.+|...|+.
T Consensus 76 ~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHH
Confidence 99999997 4667889999999999999999999999999986 355667899999999776543
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1036 -HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1036 -eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
..+...+++++ .+.. ....++++|.++...|+|++|+.+|++|+++
T Consensus 140 ~~~~~~~~~~~~-------~~~~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 140 KKKLETDYKKLS-------SPTK--MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHC----------CCCH--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHh-------CCCc--hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444444432 2222 2345777899999999999999999999965
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=4.8e-12 Score=143.68 Aligned_cols=207 Identities=13% Similarity=0.063 Sum_probs=157.8
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.+..+..++.+|..++..|++++|+.+|++++.. .++++....+++.||.+|+.+|++++|+.+|++++.+
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---- 81 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI---- 81 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----
Confidence 4455778999999999999999999999999875 3556666899999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH--------------HHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEG--------LGNVHVALRYLHKALKCNQRLLGPDHIQTAASY--------------HAIA 1068 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~--------lG~yeeAle~LekALei~ek~~G~d~~~tA~al--------------~nLA 1068 (1888)
.++++....+++++|.+|.. +|++++|+.+|+++++.. +++.....++ +.+|
T Consensus 82 -~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 82 -YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888999999999999 999999999999999875 4444444444 8899
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------------HHHHHHHHHHhcCCCCchhhhh
Q 000191 1069 IALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES------------KAFEQQEAARNGTRKPDASIAS 1136 (1888)
Q Consensus 1069 ~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q------------ka~e~AeAl~~~~~~~~~~~as 1136 (1888)
.+|..+|++++|+.+|+++++.. +++.....++.+++.... +.++.+........ ...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~-----~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL-----QIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH-----HHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH-----HHC
Confidence 99999999999999999998653 554444555555554443 33344433332211 112
Q ss_pred cCCccHHHHHHHHHHHHHHcCChHHH
Q 000191 1137 KGHLSVSDLLDYINPSHDTKGRNVST 1162 (1888)
Q Consensus 1137 ~~~~svaelL~~Lg~~y~~qGdyeEA 1162 (1888)
+++......+..++.++...++++++
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445566777777777776666554
No 85
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.40 E-value=1.2e-11 Score=137.79 Aligned_cols=175 Identities=14% Similarity=0.065 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...++.+|..+...|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++. ...
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~ 136 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALAS--------DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ------DTL 136 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh------Ccc
Confidence 456788899999999999999999999987 344567899999999999999999999999987 234
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.+....++.++|.+|...|++++|+.+|++++.+. |....++..+|.+|..+|++++|+.+|+++++..
T Consensus 137 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 205 (252)
T 2ho1_A 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG--- 205 (252)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 57778899999999999999999999999999852 3345678899999999999999999999988642
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRT 1102 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~t 1102 (1888)
+. ...++..++.+|...|++++|..++++++++ .++++..
T Consensus 206 --~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~ 245 (252)
T 2ho1_A 206 --GQ---NARSLLLGIRLAKVFEDRDTAASYGLQLKRL-----YPGSLEY 245 (252)
T ss_dssp --CC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSHHH
T ss_pred --cC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCHHH
Confidence 22 3456788899999999999999999998865 4665543
No 86
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.9e-11 Score=146.19 Aligned_cols=202 Identities=10% Similarity=0.037 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..+|..|..+|++++|++++.+++.+..++ ........++..++.++...|++++|+.++++++.+.... .+
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~ 130 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--KR 130 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--SC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--Cc
Confidence 4557889999999999999999999999987664 2333445678889999999999999999999999998774 35
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
....+.++.+||.+|..+|+|++|+.++++++...... .+++..+.++.++|.+|..+|+|++|..+|++++.+....
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 56678899999999999999999999999999876553 4578889999999999999999999999999999988665
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLR 1101 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~ 1101 (1888)
. ..+...+..+..+|.++...|+|.+|..++.+++..+.......+..
T Consensus 209 ~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~ 256 (434)
T 4b4t_Q 209 Y-CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYE 256 (434)
T ss_dssp C-CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHH
T ss_pred C-CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 2 33445678889999999999999999999999999998776665543
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.36 E-value=1.3e-11 Score=129.05 Aligned_cols=172 Identities=14% Similarity=0.185 Sum_probs=144.6
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
...+.++..+|.++...|++++|+.++++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----- 71 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD----- 71 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 345678899999999999999999999988764 3445788999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.|....++.++|.+|...|++++|+.+|++++... +. ...++..+|.+|...|++++|+.++++++.+.
T Consensus 72 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 72 ---APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-----PI---NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cH---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 24446778999999999999999999999999873 22 34678889999999999999999998887431
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1092 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1092 kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
+++ ..++..+|.+|..+|++++|+.+++++++
T Consensus 141 -----~~~-------------------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 141 -----PNE-------------------------------------------GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp -----TTC-------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----ccc-------------------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 23568889999999999999999999999
Q ss_pred Hhcc
Q 000191 1172 VKGN 1175 (1888)
Q Consensus 1172 L~dS 1175 (1888)
+...
T Consensus 173 ~~~~ 176 (186)
T 3as5_A 173 LDEG 176 (186)
T ss_dssp HHHC
T ss_pred cCCC
Confidence 8754
No 88
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.36 E-value=5.5e-11 Score=128.86 Aligned_cols=177 Identities=15% Similarity=0.011 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-GDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l-GdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
...++.+|..+...|++++|+.+|++++.. .+....++..+|.+|..+ |++++|+.++++++. ..
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~------~~ 107 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA------DP 107 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT------ST
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc------Cc
Confidence 446777899999999999999999999986 344567899999999999 999999999999987 13
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
..+....++.++|.+|...|++++|+.+|++++.. .|....++.++|.+|...|++++|+.+|+++++..
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 177 (225)
T 2vq2_A 108 TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-- 177 (225)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--
T ss_pred CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 45667889999999999999999999999999875 23345678899999999999999999999999875
Q ss_pred hcCC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 000191 1052 LLGP-DHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQD 1104 (1888)
Q Consensus 1052 ~~G~-d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~ 1104 (1888)
+ .+ ...+..++.++...|++++|..+++.+... .++++....
T Consensus 178 ---~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~~ 220 (225)
T 2vq2_A 178 ---EVLQ---ADDLLLGWKIAKALGNAQAAYEYEAQLQAN-----FPYSEELQT 220 (225)
T ss_dssp ---CSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHH
T ss_pred ---CCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----CCCCHHHHH
Confidence 3 33 334667888999999999999988877643 466665443
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.35 E-value=1.3e-12 Score=137.84 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=121.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000191 899 SSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 978 (1888)
Q Consensus 899 lG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ 978 (1888)
+|.++..+|++++|+..+++++.. .|+....++.||.+|+.+|+|++|+.+|++++.+ +|....
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~ 66 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPK 66 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 567777889999999999988754 5667778899999999999999999999999997 566788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH-HHHHHHHHHHhcCCCc
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY-LHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~-LekALei~ek~~G~d~ 1057 (1888)
+|.+||.+|..+|++++|+.+|++++++ .|....++.++|.+|..+|++++|... +++|+++. +++
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-----P~~ 133 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-----PGS 133 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-----TTC
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-----cCC
Confidence 9999999999999999999999999986 355567899999999999999887665 69999874 444
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 000191 1058 IQTAASYHAIAIALSLMEA 1076 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGd 1076 (1888)
..++..++.++...|+
T Consensus 134 ---~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 ---PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ---HHHHHHHHHHHHTCCC
T ss_pred ---HHHHHHHHHHHHHhCc
Confidence 4556777888887775
No 90
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=5.6e-11 Score=133.48 Aligned_cols=166 Identities=14% Similarity=0.032 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++.+ +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 106 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 106 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Confidence 345788899999999999999999999999987 3455678999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|....++.++|.+|..+|++++|+.+|++++.+ .++++. ....++ ++...|++++|+.+|++++...
T Consensus 107 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~~~~~~---~~~~~~-~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 107 ---DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----DPNDPF---RSLWLY-LAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp ---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH---HHHHHH-HHHHHHCHHHHHHHHHHHHHHS
T ss_pred ---CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCChH---HHHHHH-HHHHhcCHHHHHHHHHHHHhcC
Confidence 3445678999999999999999999999999985 344432 222233 3355689999999998877642
Q ss_pred HHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1050 QRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1050 ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+... ....++.++...+++++|+..+++++.
T Consensus 175 -----~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 175 -----DKEQ----WGWNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp -----CCCS----THHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred -----Ccch----HHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 1111 012234444445555555555555443
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.30 E-value=1.1e-10 Score=130.38 Aligned_cols=178 Identities=18% Similarity=0.142 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..++.+|..++..|++++|+..|++++.. .++++....+++++|.+|+.+|++++|+..|++++.. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcC
Confidence 457899999999999999999999999986 3455666789999999999999999999999999985 466
Q ss_pred ChhHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH--------------
Q 000191 1015 HPNTAATYINVAMMEEG------------------LGNVHVALRYLHKALKCNQRLLGPDHIQTAA-------------- 1062 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~------------------lG~yeeAle~LekALei~ek~~G~d~~~tA~-------------- 1062 (1888)
++....+++.+|.+|.. +|++++|+..|+++++.. +++.....
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~a~~a~~~l~~~~~~~~~ 148 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 148 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-----TTCTTHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 77777788889998876 678999999999988764 34433222
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccH
Q 000191 1063 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSV 1142 (1888)
Q Consensus 1063 al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~sv 1142 (1888)
....+|.+|...|++++|+..|+++++.+ ++++ ..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~----------------------------------------~~ 183 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQ----------------------------------------AT 183 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSH----------------------------------------HH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCC----------------------------------------cc
Confidence 22567777888888888888887776542 2221 22
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1143 SDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1143 aelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.+++..+|.+|..+|++++|+.+++++...
T Consensus 184 ~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 184 RDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 356788999999999999999999877654
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.30 E-value=5.9e-12 Score=164.47 Aligned_cols=161 Identities=14% Similarity=-0.026 Sum_probs=137.0
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 983 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nL 983 (1888)
+..|++++|+..|++++.......+..+|..+.++..+|.+|..+|++++|+..|++++.+ +|....+++++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHH
Confidence 6789999999999999832222223346777789999999999999999999999999987 35567899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000191 984 AVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAAS 1063 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~a 1063 (1888)
|.+|..+|++++|+.+|++|+.+ .|....+++++|.+|..+|++++ +.+|++|+++. +....+
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l--------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--------P~~~~a 536 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT--------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--------DGVISA 536 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--------TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--------CchHHH
Confidence 99999999999999999999986 34456778999999999999999 99999999873 344568
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1064 YHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1064 l~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
++++|.+|..+|++++|+.+|++|++
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 89999999999999999999998874
No 93
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.30 E-value=9.8e-11 Score=137.14 Aligned_cols=165 Identities=9% Similarity=0.013 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+..++..+...|++++|+..+++.+.. ..+|....++..+|.+|...|++++|+.++++
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------ 126 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------ 126 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------
Confidence 445555667777777777777777766542 12344556677777777777777777777665
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+....++..+|.+|..+|++++|+.+|++++.+ .+++.. ......+..++...|++++|+.+|+++++..
T Consensus 127 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--- 196 (291)
T 3mkr_A 127 -GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADKC--- 196 (291)
T ss_dssp -CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHhC---
Confidence 233456777777777777777777777777764 222221 1111111123334577777777777777652
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+ ....+++++|.+|..+|++++|+.++++++.+
T Consensus 197 --p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 197 --S---PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp --C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 23456777777777777777777777777743
No 94
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.29 E-value=1.3e-10 Score=132.27 Aligned_cols=190 Identities=17% Similarity=0.105 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHH
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ 1008 (1888)
..+.++..+|.+|...|++++|+.+|++++. +....++.+||.+|.. .+++++|+.+|++|+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-- 71 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD----------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-- 71 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--
Confidence 3456899999999999999999999999987 1234688999999999 99999999999999874
Q ss_pred HhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHH
Q 000191 1009 LTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLS 1080 (1888)
Q Consensus 1009 ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeA 1080 (1888)
+ ...++.++|.+|.. .+++++|+.+|++|++. + ...++++||.+|.. .+++++|
T Consensus 72 ---~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 72 ---N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----K-----YAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp ---T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ---C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----C-----CccHHHHHHHHHHcCCCcccCHHHH
Confidence 1 24678899999999 99999999999999875 1 35678899999999 9999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHH
Q 000191 1081 VQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFES------KAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHD 1154 (1888)
Q Consensus 1081 le~lqkALeI~kk~LG~dh~~tl~a~~~La~L~q------ka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~ 1154 (1888)
+.++++|++. + +.. +...++.+.. +..+.+......... . .....+..+|.+|.
T Consensus 134 ~~~~~~a~~~-----~--~~~---a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-------~---~~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 134 VEYFTKACDL-----N--DGD---GCTILGSLYDAGRGTPKDLKKALASYDKACD-------L---KDSPGCFNAGNMYH 193 (273)
T ss_dssp HHHHHHHHHT-----T--CHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-------T---TCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-----C--cHH---HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------C---CCHHHHHHHHHHHH
Confidence 9999999863 2 332 3334443332 344444333322110 1 11357899999999
Q ss_pred H----cCChHHHHHHHHHHHHH
Q 000191 1155 T----KGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1155 ~----qGdyeEAleyyeKALeL 1172 (1888)
. .+++++|+.+|++++++
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhC
Confidence 9 99999999999999976
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.27 E-value=5.1e-11 Score=138.89 Aligned_cols=169 Identities=12% Similarity=0.031 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
....++.+|..++..|++++|+.+|++++.+ +|....++..||.+|..+|++++|+.++++++..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~------- 180 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ------- 180 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-------
Confidence 3566788999999999999999999999987 5666789999999999999999999999998764
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+|+.......++..+...++.++|+..|++++.+ +|+...+++++|.+|...|++++|+..|+++++..
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-- 249 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-- 249 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--
Confidence 2344566777888888999999999999999986 46667789999999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+++ ....++.+|+.+|..+|+.++|+..|++++..
T Consensus 250 ---p~~-~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 250 ---LTA-ADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ---TTG-GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---ccc-ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 221 22577889999999999999999999999864
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=6.7e-11 Score=154.57 Aligned_cols=169 Identities=16% Similarity=0.066 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++.+|++++|+..|++++++ +|..+.+++++|.+|..+|++++|+..|++|+.+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-------- 496 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-------- 496 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 346778899999999999999999999987 4556789999999999999999999999999997
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
.|....++++||.+|..+|++++ +.+|++|+++ +|....+++++|.+|..+|++++|+.+|++|+++
T Consensus 497 ~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---- 563 (681)
T 2pzi_A 497 FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT---- 563 (681)
T ss_dssp STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT----
T ss_pred CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc----
Confidence 45667889999999999999999 9999999986 3556678999999999999999999999999875
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHh
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLS-VQHEQTTLQILRAK 1094 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeA-le~lqkALeI~kk~ 1094 (1888)
.+....+++++|.+|...++.++| ...+++|++.+...
T Consensus 564 ----~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 564 ----SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp ----STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred ----CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 355678899999999887876666 67788888777654
No 97
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.26 E-value=1.6e-10 Score=135.33 Aligned_cols=224 Identities=13% Similarity=0.057 Sum_probs=155.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKS 979 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~-A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~a 979 (1888)
+.++..|+|.+|+..+++... ..|.. ..+...++++|..+|++++|+..++. . .+....+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~-~~~~~~a 67 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------S-SAPELQA 67 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------T-SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------c-CChhHHH
Confidence 556688999999988876432 24444 35677888999999999988875533 1 2345678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHH
Q 000191 980 YGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQ 1059 (1888)
Q Consensus 980 y~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~ 1059 (1888)
+..+|.++...+++++|++.+++++.. ..+|+...++..+|.+|...|++++|+.+|++ +.
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----------~~--- 128 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----------GD--- 128 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------CC---
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------CC---
Confidence 888899999889999999888887652 12455566788889999999999999988876 22
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCCchhhhhcC
Q 000191 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFE-SKAFEQQEAARNGTRKPDASIASKG 1138 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~-qka~e~AeAl~~~~~~~~~~~as~~ 1138 (1888)
...++..+|.+|..+|++++|+..+++++++ .+++........|+.... .+.++.+......... .
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~-------~- 195 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQ-----DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD-------K- 195 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-------H-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-------h-
Confidence 3456778899999999999999999888765 466654433333333222 1334444333221110 0
Q ss_pred CccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1139 HLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1139 ~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+....+++.+|.+|..+|++++|..+|++++++...
T Consensus 196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 1123457888999999999999999999998887543
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.25 E-value=4.6e-11 Score=151.72 Aligned_cols=153 Identities=14% Similarity=0.088 Sum_probs=119.8
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000191 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 985 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ 985 (1888)
.|++++|+.+|++++++ +|..+.++..+|.+|..+|++++|+.+|++|+.+ +|....++.+||.
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGR 65 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 47899999999999876 4556789999999999999999999999999986 4566789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 000191 986 FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYH 1065 (1888)
Q Consensus 986 ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~ 1065 (1888)
+|..+|++++|+.+|++++.+ +|....++.++|.+|..+|++++|+.+|++++++. + ....++.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p---~~~~~~~ 129 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-----P---EEPYITA 129 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHH
Confidence 999999999999999999986 34456789999999999999999999999999873 2 3356788
Q ss_pred HHHHHHHHc---CChHHHHHHHHHHHHH
Q 000191 1066 AIAIALSLM---EAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1066 nLA~ay~~l---GdydeAle~lqkALeI 1090 (1888)
++|.+|..+ |++++|+.+++++++.
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999 9999999999999865
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=1.7e-11 Score=129.16 Aligned_cols=139 Identities=13% Similarity=0.052 Sum_probs=113.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000191 940 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTA 1019 (1888)
Q Consensus 940 ~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a 1019 (1888)
.||.++..+|++++|+..+++++.. .|+....+++||.+|+.+|+|++|+.+|++++.+ +|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDP 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Confidence 5889999999999999999998764 4666778899999999999999999999999986 35567
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH-HHHHHHHHHHhcCCC
Q 000191 1020 ATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH-EQTTLQILRAKLGPD 1098 (1888)
Q Consensus 1020 ~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~-lqkALeI~kk~LG~d 1098 (1888)
.++.++|.+|..+|++++|+.+|++++++. +....+++++|.+|..+|++++|... +++|+++ .|+
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-----~P~ 132 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-----FPG 132 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH-----STT
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh-----CcC
Confidence 889999999999999999999999999873 34456889999999999999877665 5888865 578
Q ss_pred CHHHHHHHH
Q 000191 1099 DLRTQDAAA 1107 (1888)
Q Consensus 1099 h~~tl~a~~ 1107 (1888)
++.......
T Consensus 133 ~~~~~~l~~ 141 (150)
T 4ga2_A 133 SPAVYKLKE 141 (150)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 876544433
No 100
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.24 E-value=5.6e-10 Score=139.00 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALD 963 (1888)
Q Consensus 892 ~A~~LlelG~~~l~----qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~ 963 (1888)
++..++.+|..|+. .+++++|+.+|+++++. . .+.+++.||.+|.. .+++++|+.+|++|+.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 107 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAAL 107 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 35667778888888 88899999999888753 1 24578888888888 8888899888888875
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCH
Q 000191 964 INERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNV 1035 (1888)
Q Consensus 964 I~Er~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~y 1035 (1888)
. ....++++||.+|.. .+++++|+.+|++|... ++ ..++.+||.+|.. .+++
T Consensus 108 ~----------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 108 K----------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR---DSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp T----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCH
T ss_pred C----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCCCCH
Confidence 2 134677788888888 78888888888888652 22 4567788888887 7788
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1036 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1036 eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALe 1089 (1888)
++|+.+|+++++. | ...++++||.+|.. .+++++|+.+|+++.+
T Consensus 168 ~~A~~~~~~a~~~-----~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 168 VMAREWYSKAAEQ-----G-----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-----C-----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 8888888888753 1 24567778888887 7888888888887764
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.23 E-value=1.1e-10 Score=119.84 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=102.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+|+.+.++.++|..|+.+|+|++|+.+|++|+.+ +|....+|.++|.+|..+|++++|+.+|++|+.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 47899999999999999999999999999999987 4667889999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~a 1070 (1888)
+|....++.++|.+|..+|++++|+.+|++++++. +++ ..++..|+.+
T Consensus 77 -----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~-----P~~---~~a~~~l~~~ 124 (126)
T 4gco_A 77 -----DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD-----PSN---EEAREGVRNC 124 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHH
T ss_pred -----hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----cCC---HHHHHHHHHh
Confidence 35556789999999999999999999999999973 333 4456666655
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=5e-11 Score=127.91 Aligned_cols=166 Identities=17% Similarity=0.072 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++... + +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-----p-~ 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-----Q-D 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-----C-C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-----C-C
Confidence 34678889999999999999999999987 46667899999999999999999999999987641 2 2
Q ss_pred hhhHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 974 PDTMKSYGDLAVFY-YRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 974 p~ta~ay~nLA~ly-~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+ ..+..++.+. ...++..+|+.+|++++.+ +|....+++++|.+|...|++++|+.+|+++++..
T Consensus 73 ~---~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--- 138 (176)
T 2r5s_A 73 N---SYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVN--- 138 (176)
T ss_dssp H---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred h---HHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---
Confidence 3 2233334332 2334445689999999885 35556788999999999999999999999998763
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
++. ....++.++|.+|..+|++++|+.+|++++..
T Consensus 139 --p~~-~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 --LGA-QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp --TTT-TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred --ccc-ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 211 12357888999999999999999999998753
No 103
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.20 E-value=3.7e-10 Score=115.76 Aligned_cols=108 Identities=18% Similarity=0.264 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
.+.+.++.+||.+|+.+|+|++|+.+|++|+.+ +|....+|.++|.+|..+|+|++|+.+|++|+.+....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 456789999999999999999999999999987 46678899999999999999999999999999987653
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...+...+.++.++|.+|..+|++++|+.+|+++|..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4456778889999999999999999999999999986
No 104
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.20 E-value=2.3e-09 Score=133.57 Aligned_cols=157 Identities=13% Similarity=0.062 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALD----KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDI 964 (1888)
Q Consensus 893 A~~LlelG~~~l~----qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~----lGdyeeAl~~~eKAL~I 964 (1888)
+..++.+|..|.. .+++++|+.+|++|... . ...++..||.+|.. .+++++|+.+|++|+..
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 144 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ 144 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5677888999998 89999999999998753 1 24578889999988 88999999999998763
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHH
Q 000191 965 NERELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVH 1036 (1888)
Q Consensus 965 ~Er~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~ye 1036 (1888)
....++.+||.+|.. .+++++|+.+|+++++. .+ ..++.+||.+|.. .++++
T Consensus 145 ----------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 145 ----------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp ----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH
T ss_pred ----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHH
Confidence 235678889999988 78899999999998763 12 4567888998888 88899
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1037 VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1037 eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALe 1089 (1888)
+|+.+|+++++. | ...+++.||.+|.. .+++++|+.+++++.+
T Consensus 205 ~A~~~~~~a~~~-----~-----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 205 ISAQWYRKSATS-----G-----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC-----C-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 999999888753 1 23467778888876 7788888888877763
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.19 E-value=2.5e-10 Score=117.14 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..+.++|..++.+|+|++|+.+|++|+.+ +|..+.+|.++|.+|..+|++++|+..+++|+.+
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 76 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL----- 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence 456788999999999999999999999999987 5666789999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
+|....+|.++|.+|..+|++++|+.+|++++++ +|....++.+|+.++
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 4667789999999999999999999999999986 344455666777653
No 106
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.19 E-value=4.2e-11 Score=143.07 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=130.4
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-------ChhhHH
Q 000191 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-------HPDTMK 978 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D-------hp~ta~ 978 (1888)
.+++++|+.+|++++.. .+..+.++..+|.+|+.+|+|++|+.+|++|+.+.......+ .+..+.
T Consensus 126 L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 45677777777777665 466788999999999999999999999999999843210000 112368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
+|.+||.+|..+|++++|+.+|++|+.+ +|....+++++|.+|..+|++++|+.+|++|+++. +
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----P--- 261 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----P--- 261 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----S---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----C---
Confidence 9999999999999999999999999986 35567889999999999999999999999999873 3
Q ss_pred HHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHH
Q 000191 1059 QTAASYHAIAIALSLMEAYPLS-VQHEQTTLQIL 1091 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeA-le~lqkALeI~ 1091 (1888)
....++.+|+.++..+|++++| ...|++.+..+
T Consensus 262 ~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3356788999999999999988 44666655443
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.18 E-value=1.1e-09 Score=121.24 Aligned_cols=170 Identities=11% Similarity=0.005 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH----------------HHHHHHHCCCHHHHHH
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN----------------VAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~N----------------LA~iy~~lG~yeeAle 1040 (1888)
+..+...|..++..|++++|+.+|++++.+ +|....++++ +|.+|..+|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 456778999999999999999999999986 4666677777 9999999999999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000191 1041 YLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQ 1120 (1888)
Q Consensus 1041 ~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~A 1120 (1888)
+|++++++. |....+++++|.+|..+|++++|+.+|++++++ .+++......+..+.+. .+..+.+
T Consensus 76 ~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~-~~~~~~~ 141 (208)
T 3urz_A 76 FYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL-----EADNLAANIFLGNYYYL-TAEQEKK 141 (208)
T ss_dssp HHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHH-HhHHHHH
Confidence 999999873 344678899999999999999999999999965 67777655544443222 2222222
Q ss_pred HHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1121 EAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1121 eAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
.+......... .......++.+|..+..+|+|++|+.+|++++++...
T Consensus 142 ~~~~~~~~~~~-------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 142 KLETDYKKLSS-------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHC---C-------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHhC-------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 22211111111 1122345677899999999999999999999998765
No 108
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.17 E-value=6.9e-10 Score=129.86 Aligned_cols=199 Identities=17% Similarity=0.102 Sum_probs=152.2
Q ss_pred HcCCh-------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000191 905 DKGKL-------EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 905 ~qGd~-------dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
..|++ ++|+..|++|+.. .+|....+|..+|.++..+|++++|...|++++.+ .++++.
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~-------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~-- 134 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----EDIDPT-- 134 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTT-------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----SSSCTH--
T ss_pred hccchhhcccchHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----cccCcc--
Confidence 56886 8888888888872 14556678999999999999999999999999985 222222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-GLGNVHVALRYLHKALKCNQRLLGPD 1056 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~-~lG~yeeAle~LekALei~ek~~G~d 1056 (1888)
.++.++|.++...|++++|+.+|++|+.+ .+.+ ..++...+.+.. ..|++++|+.+|+++++.. ++
T Consensus 135 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~p~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-----p~ 201 (308)
T 2ond_A 135 LVYIQYMKFARRAEGIKSGRMIFKKARED-----ARTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GD 201 (308)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHTS-----TTCC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-----TT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC
Confidence 28899999999999999999999999874 2222 344555555543 3799999999999999985 33
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhh
Q 000191 1057 HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIAS 1136 (1888)
Q Consensus 1057 ~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as 1136 (1888)
...++..+|.++..+|++++|...|++|+... .+.++
T Consensus 202 ---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~-------------------------------------- 238 (308)
T 2ond_A 202 ---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPE-------------------------------------- 238 (308)
T ss_dssp ---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGG--------------------------------------
T ss_pred ---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHH--------------------------------------
Confidence 35677888999999999999999998887420 00000
Q ss_pred cCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1137 KGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1137 ~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
....++..++..+...|++++|..++++++++.....
T Consensus 239 ----~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 239 ----KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp ----GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 1123566667777888999999999999999887543
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=5.1e-10 Score=124.50 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG----DFNQATIYQQKALDINER 967 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG----dyeeAl~~~eKAL~I~Er 967 (1888)
++..++.+|..+...+++++|+.+|++|+.. ..+.++++||.+|.. + ++++|+.+|++|+..
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--- 82 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--- 82 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---
Confidence 4677889999999999999999999999764 234689999999998 7 999999999999652
Q ss_pred hcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHH
Q 000191 968 ELGLDHPDTMKSYGDLAVFYYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVAL 1039 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAl 1039 (1888)
....++++||.+|.. .+++++|+.+|++|++. |. ......++++||.+|.. .+++++|+
T Consensus 83 -------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 83 -------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-----SE-SDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp -------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-----TT-SHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred -------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-----CC-CcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 346789999999998 89999999999999863 11 11457789999999999 89999999
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHH
Q 000191 1040 RYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLM-E-----AYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1040 e~LekALei~ek~~G~d~~~tA~al~nLA~ay~~l-G-----dydeAle~lqkALeI 1090 (1888)
.+|++|++.. . ...++++||.+|... | ++++|+.+|++|.+.
T Consensus 150 ~~~~~A~~~~------~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 150 EYFKGSSSLS------R---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHTS------C---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC------C---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9999998651 1 123688999999864 3 899999999999854
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.15 E-value=4.7e-10 Score=124.80 Aligned_cols=178 Identities=12% Similarity=0.033 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
.+|+.+|+++.+. ..+.+++.||.+|...+++++|+.+|++|+.. ....++++||.+|..
T Consensus 3 ~eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 3 TEPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIR 62 (212)
T ss_dssp -CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHc
Confidence 3577888888754 23468999999999999999999999999763 235789999999998
Q ss_pred cC----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000191 990 LQ----HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTA 1061 (1888)
Q Consensus 990 lG----dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei~ek~~G~d~~~tA 1061 (1888)
+ ++++|+.+|++|... .+ ..++++||.+|.. .+++++|+.+|++|++.- .....+
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~-------g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~ 125 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEA-------GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAV 125 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHH
T ss_pred -CCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchH
Confidence 7 999999999999652 23 4678899999998 899999999999998641 111357
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhc
Q 000191 1062 ASYHAIAIALSL----MEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASK 1137 (1888)
Q Consensus 1062 ~al~nLA~ay~~----lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~ 1137 (1888)
.++++||.+|.. .+++++|+.+|++|.+. + .+
T Consensus 126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----~-~~-------------------------------------- 161 (212)
T 3rjv_A 126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-----S-RT-------------------------------------- 161 (212)
T ss_dssp HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-----S-CT--------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----C-CC--------------------------------------
Confidence 789999999999 88999999999988632 1 11
Q ss_pred CCccHHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHHHh
Q 000191 1138 GHLSVSDLLDYINPSHDTK-G-----RNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1138 ~~~svaelL~~Lg~~y~~q-G-----dyeEAleyyeKALeL~ 1173 (1888)
...+..||.+|... | ++++|+.+|++|.+.-
T Consensus 162 -----~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 162 -----GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp -----THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 01356667776543 3 8999999999998763
No 111
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.15 E-value=9.2e-10 Score=112.78 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
.+.+.++.+||..++.+|+|++|+.+|.+|+++ +|..+.+++++|.+|..+|+|++|+.+|++|+++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 456788999999999999999999999999986 45667889999999999999999999999999997654
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
...+...+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455677889999999999999999999999999865
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.13 E-value=4e-10 Score=122.72 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++. . .+.++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-------~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 66 (213)
T 1hh8_A 3 LVEAISLWNEGVLAADKKDWKGALDAFSAVQD-------P----HSRICFNIGCMYTILKNMTEAEKAFTRSINR----- 66 (213)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS-------C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC-------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 34567788999999999999999999998841 1 3468999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC--------GPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~--------G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+..... ...+|....++.++|.+|..+|++++|+.+
T Consensus 67 ---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 67 ---DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 355678999999999999999999999999998632100 002356678999999999999999999999
Q ss_pred HHHHHHHH
Q 000191 1042 LHKALKCN 1049 (1888)
Q Consensus 1042 LekALei~ 1049 (1888)
|++++++.
T Consensus 144 ~~~al~~~ 151 (213)
T 1hh8_A 144 LALATSMK 151 (213)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcC
Confidence 99999764
No 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=1.3e-09 Score=107.42 Aligned_cols=131 Identities=27% Similarity=0.446 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 973 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh 973 (1888)
..++.+|..+...|++++|+.++++++.. ++....++..+|.++...|++++|+.++++++.. .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~ 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------D 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------C
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------C
Confidence 34677899999999999999999999876 2344568899999999999999999999999876 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+.....+.++|.++...|++++|+.++.+++... |....++..+|.+|...|++++|+.+|+++++.
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 3456788999999999999999999999998752 333567888999999999999999999999875
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.13 E-value=1.7e-09 Score=112.20 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=117.0
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+..+..+|.+++..|++++|+.++++++.+ .+....++.++|.+|..+|++++|+.+|.+++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34678999999999999999999999999986 3455788999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
+|....++.++|.+|..+|++++|+.+|++++++. +.+. .+..+..++..+...|++++|+.++.++..++.
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 24456788999999999999999999999999874 3333 233445566668889999999999999888775
Q ss_pred H
Q 000191 1093 A 1093 (1888)
Q Consensus 1093 k 1093 (1888)
.
T Consensus 149 ~ 149 (166)
T 1a17_A 149 S 149 (166)
T ss_dssp H
T ss_pred c
Confidence 4
No 115
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.13 E-value=1.1e-09 Score=107.81 Aligned_cols=131 Identities=27% Similarity=0.455 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+++.+|.+|...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+ .
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~--- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----D--- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----C---
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----C---
Confidence 46889999999999999999999999875 2445678899999999999999999999999875 2
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|....++.++|.++...|++++|+.++++++... +. ...++..+|.+|...|++++|+.++++++.+
T Consensus 66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 3335678899999999999999999999999863 22 2457788999999999999999999998864
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.12 E-value=1.5e-09 Score=112.43 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG 970 (1888)
..+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------ 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------ 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 45788999999999999999999999999987 3445678999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+ .+.++. +..+..++..+...|++++|+.+++++..+..
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHDKD-AKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHH-HHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 3556788999999999999999999999999986 233433 23345566668889999999999999988875
Q ss_pred Hh
Q 000191 1051 RL 1052 (1888)
Q Consensus 1051 k~ 1052 (1888)
..
T Consensus 149 ~~ 150 (166)
T 1a17_A 149 SL 150 (166)
T ss_dssp HC
T ss_pred cc
Confidence 53
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.10 E-value=2e-10 Score=122.43 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=94.7
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+|..+.+++.+|.+++.+|++++|+.+|++++.+ +|....++.+||.+|..+|+|++|+.+|++|+.+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--- 99 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--- 99 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---
Confidence 46888899999999999999999999999999987 5677889999999999999999999999999987
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
. |....+++++|.+|..+|++++|+.+|++++++.
T Consensus 100 --~---P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 100 --G---KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp --S---SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --C---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2 4445678999999999999999999999999874
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=6.5e-10 Score=121.10 Aligned_cols=137 Identities=15% Similarity=0.078 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+..++.+|.+++..|++++|+.+|++++. + ...++.++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINR-------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 45678999999999999999999998841 1 3568999999999999999999999999986
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL--------GPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~--------G~d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
+|....+++++|.+|..+|++++|+.+|++++++..... ....+....+++++|.+|..+|++++|+.++++
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 245567899999999999999999999999998653210 002345678899999999999999999999999
Q ss_pred HHHH
Q 000191 1087 TLQI 1090 (1888)
Q Consensus 1087 ALeI 1090 (1888)
++.+
T Consensus 147 al~~ 150 (213)
T 1hh8_A 147 ATSM 150 (213)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 9865
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.06 E-value=1.1e-09 Score=115.46 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=93.0
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
+|....+++.+|.+++.+|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 5777889999999999999999999999999987 4566788999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
. |....+++++|.+|..+|++++|+.+|++++++.
T Consensus 85 -~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 -D---IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp -S---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -C---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 2 3444678999999999999999999999999986
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.06 E-value=2e-09 Score=128.61 Aligned_cols=144 Identities=16% Similarity=0.119 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~-------dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
...+..++.+|..++.+|++++|+.+|++|+.+....... ..+..+.+|.+||.+|..+|++++|+.+|++|+
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457788999999999999999999999999884221000 012236899999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH-HHH
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA-LRY 1041 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeA-le~ 1041 (1888)
.+ .|....+|+++|.+|..+|++++|+.+|++|+.+ .|....++.++|.++..+|++++| ...
T Consensus 224 ~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 224 EL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 4667889999999999999999999999999986 344567889999999999999998 556
Q ss_pred HHHHHHHH
Q 000191 1042 LHKALKCN 1049 (1888)
Q Consensus 1042 LekALei~ 1049 (1888)
|++.+...
T Consensus 288 ~~~~~~~~ 295 (336)
T 1p5q_A 288 YANMFERL 295 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666544
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.05 E-value=3.8e-09 Score=106.20 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+..+..+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 35678999999999999999999999999987 4556789999999999999999999999999986
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL 1073 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~ 1073 (1888)
+|....++.++|.+|..+|++++|+.+|++++++..... +.+....++..++.+...
T Consensus 68 --~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 --DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 345567899999999999999999999999999874442 223344555556655443
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.04 E-value=4.4e-10 Score=119.85 Aligned_cols=102 Identities=11% Similarity=-0.014 Sum_probs=92.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|....+++++|.+++.+|++++|+.+|++++.+ +|....++.++|.+|..+|+|++|+.+|++|+++.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--- 100 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--- 100 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---
Confidence 5788899999999999999999999999999986 35566789999999999999999999999999984
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
++ ...+++++|.+|..+|++++|+.+|++++++
T Consensus 101 --P~---~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 101 --KN---DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp --SS---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 3467899999999999999999999999976
No 123
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=2.4e-09 Score=124.67 Aligned_cols=171 Identities=11% Similarity=-0.033 Sum_probs=142.1
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
|.....+..+|..+...|++++|+.+|++++.. +|....++.+||.+|..+|++++|+.+|++++..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----
Confidence 344567899999999999999999999999987 4666789999999999999999999999998764
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+|+......+.+..+...++.++|+..|+++++.. |....++++||.+|...|++++|+..|++++..
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~- 248 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--------PEDAALATQLALQLHQVGRNEEALELLFGHLRX- 248 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-
Confidence 23445566777888888899999999999999873 445668899999999999999999999988854
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1092 RAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1092 kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALe 1171 (1888)
.+++ ....++..++.+|...|+.++|...|++++.
T Consensus 249 ----~p~~-----------------------------------------~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 249 ----DLTA-----------------------------------------ADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp ----CTTG-----------------------------------------GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----cccc-----------------------------------------ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 2221 0123578888999999999999999999986
Q ss_pred H
Q 000191 1172 V 1172 (1888)
Q Consensus 1172 L 1172 (1888)
.
T Consensus 284 ~ 284 (287)
T 3qou_A 284 A 284 (287)
T ss_dssp H
T ss_pred H
Confidence 4
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.00 E-value=7e-09 Score=104.29 Aligned_cols=122 Identities=16% Similarity=0.067 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 67 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------- 67 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 4678899999999999999999999999987 4556789999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+|....++.++|.+|..+|++++|+.+|++++.+..... +.|....++..++.+...
T Consensus 68 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 68 -DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 456678999999999999999999999999999864321 224455556666665543
No 125
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.99 E-value=4.4e-10 Score=139.99 Aligned_cols=154 Identities=18% Similarity=0.143 Sum_probs=123.5
Q ss_pred cCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-------CChhhHH
Q 000191 906 KGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL-------DHPDTMK 978 (1888)
Q Consensus 906 qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~-------Dhp~ta~ 978 (1888)
.+++++|+.+|++++.. .+..+.++..+|.+|+.+|+|++|+.+|++|+.+....... ..+....
T Consensus 247 l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 318 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 318 (457)
T ss_dssp EEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHH
Confidence 35666777777776665 45667899999999999999999999999999985321000 0122368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcH
Q 000191 979 SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHI 1058 (1888)
Q Consensus 979 ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~ 1058 (1888)
+|+++|.+|..+|+|++|+.+|.+|+.+ +|....+++++|.+|..+|+|++|+.+|++|+++. +
T Consensus 319 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--------P 382 (457)
T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------P 382 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------C
Confidence 9999999999999999999999999986 35557889999999999999999999999999863 4
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHH
Q 000191 1059 QTAASYHAIAIALSLMEAYPLSVQH 1083 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~ 1083 (1888)
....++.+++.++..++++++|...
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888999999999999877653
No 126
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.99 E-value=1.4e-10 Score=145.61 Aligned_cols=178 Identities=12% Similarity=0.087 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++.+|++++|+.+|++|+++ +|..+.++.++|.+|..+|++++|+.++++|+.+
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------- 69 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 69 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3455666778888999999999999999987 5666889999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHHCCCHHHHHHHHH------
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM--EEGLGNVHVALRYLH------ 1043 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i--y~~lG~yeeAle~Le------ 1043 (1888)
+|....+++++|.+|..+|++++|+.+|++|+++ .+++ ..++.+++.+ +..+|++++|+.+++
T Consensus 70 -~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~ 140 (477)
T 1wao_1 70 -DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV-----KPHD---KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 140 (477)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTC---TTHHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 5667889999999999999999999999999986 2333 3456677777 888999999999999
Q ss_pred -----HHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHH
Q 000191 1044 -----KALKCNQRLLGPDHIQ---TAASYHAIAIALSLMEAY--PLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1044 -----kALei~ek~~G~d~~~---tA~al~nLA~ay~~lGdy--deAle~lqkALeI~kk 1093 (1888)
+++++.....++.+.. +...+..+...+...+.+ ..+...+.++.+++..
T Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 7766655555555443 233344444455444544 4455577788877765
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.97 E-value=9.3e-09 Score=101.25 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=106.7
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
..+..+.++..+|.+++..|++++|+.++++++.. .+....++.++|.+|...|++++|+.++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--- 75 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--- 75 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---
Confidence 34566789999999999999999999999999986 3445778999999999999999999999999985
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYP 1078 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyd 1078 (1888)
.|....++.++|.+|..+|++++|+.+|++++++. ++ ...++..+|.++..+|+++
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~---~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-----PD---NETYKSNLKIAELKLREAP 131 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TT---CHHHHHHHHHHHHHHTTCC
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----cc---chHHHHHHHHHHHHHhcCC
Confidence 23446678999999999999999999999999873 22 3457788999999988763
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.97 E-value=5.5e-09 Score=103.93 Aligned_cols=124 Identities=20% Similarity=0.200 Sum_probs=105.9
Q ss_pred CCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000191 929 PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 929 ~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
...+....++..+|.+++..|++++|+.++++++.. .+....++.++|.+|..+|++++|+.++++++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-- 79 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-- 79 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 345667889999999999999999999999999875 3455788999999999999999999999999986
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 000191 1009 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 1076 (1888)
Q Consensus 1009 ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGd 1076 (1888)
.|....++.++|.+|..+|++++|+.+|++++++. +....++..++.++..+|+
T Consensus 80 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------GGGTHHHHHHHHHHHHHTC
T ss_pred ------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHhcC
Confidence 24446788999999999999999999999999874 2345677888998887764
No 129
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=4.1e-08 Score=116.64 Aligned_cols=239 Identities=6% Similarity=0.003 Sum_probs=178.1
Q ss_pred HHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcC
Q 000191 894 RQLLESSKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~-dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG--dyeeAl~~~eKAL~I~Er~lG 970 (1888)
+.++...+..+..|.+ ++|+.++.++|.+ +|+...+++..+.++..+| ++++|+.++.+++.+
T Consensus 33 ~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------ 98 (306)
T 3dra_A 33 KQIMGLLLALMKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD------ 98 (306)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH------
Confidence 4445555667777877 5899999999988 6777889999999999999 999999999999986
Q ss_pred CCChhhHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH--HHHHH
Q 000191 971 LDHPDTMKSYGDLAVFY----YRL---QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH--VALRY 1041 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly----~~l---GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye--eAle~ 1041 (1888)
+|....++++.+.++ ... +++++++.++.+++.. +|....++++.++++..+|.++ +++++
T Consensus 99 --nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 99 --NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp --CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 566677888888888 666 7899999999999975 5677788999999999999998 99999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000191 1042 LHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA------YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 1115 (1888)
Q Consensus 1042 LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGd------ydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk 1115 (1888)
++++++.. +....++++.+.++...+. ++++++++++++.+ .+.+........++......
T Consensus 169 ~~~~i~~d--------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~-----~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 169 VDKVIDTD--------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK-----CPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHC--------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhC--------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh-----CCCCccHHHHHHHHHHhcCC
Confidence 99999763 3345678888888888887 88899998888854 56666554444443322111
Q ss_pred HHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Q 000191 1116 AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKG 1174 (1888)
Q Consensus 1116 a~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~d 1174 (1888)
..+....+........ . ....-..++.+++.+|.++|++++|+++|+++.+-.+
T Consensus 236 ~~~~~~~~~~~~~~~~----~-~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 236 SITQLEEFSLQFVDLE----K-DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp CGGGGHHHHHTTEEGG----G-TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHhcc----C-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 1111222222111100 0 0122345789999999999999999999999876333
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.95 E-value=1.2e-08 Score=100.36 Aligned_cols=122 Identities=24% Similarity=0.304 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l 969 (1888)
...+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----
Confidence 455778899999999999999999999999987 3444678999999999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV 1035 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~y 1035 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+ .|....++.++|.++..+|++
T Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 ---DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTTC
T ss_pred ---CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhcC
Confidence 3445778999999999999999999999999986 233456778899999988875
No 131
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.95 E-value=7.6e-09 Score=131.40 Aligned_cols=133 Identities=18% Similarity=0.066 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+..+|++++|+.+|++++++ +|....++.+||.+|..+|++++|+.++++++.+
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 86 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-------- 86 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 566888899999999999999999999976 4566789999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL---GNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l---G~yeeAle~LekALei~ 1049 (1888)
+|....++.+||.+|..+|++++|+.+|++++++ +|....++.++|.+|..+ |++++|+.+|+++++..
T Consensus 87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--------LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 3556789999999999999999999999999986 344567889999999999 99999999999999874
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.95 E-value=1.1e-08 Score=108.11 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=94.2
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
..+..+..+..+|.+|+..|+|++|+.+|++++.+ .|....+|.++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 34567889999999999999999999999999987 3556789999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 35557789999999999999999999999999986
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.95 E-value=2.7e-09 Score=113.54 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=103.1
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000191 903 ALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 982 (1888)
Q Consensus 903 ~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~n 982 (1888)
+...|++++|+.++++++.. +|....++..+|.+|..+|++++|+.+|++++.+. |....++.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 34678999999999999987 45556799999999999999999999999999873 344678899
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 983 LAVF-YYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 983 LA~l-y~~lGdy--eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|.+ |...|++ ++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL--------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999 8899999 9999999999986 24446778999999999999999999999999874
No 134
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.94 E-value=8.2e-09 Score=108.78 Aligned_cols=108 Identities=15% Similarity=0.063 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPY----------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~d----------hpe~A~ay~~LA~ly~~lGdyeeAl~~~eK 960 (1888)
..+..+...|..++..|+|++|+.+|.+|+.+........ .+..+.+|.++|.+|..+|+|++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4578899999999999999999999999999865542211 455678999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 961 AL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
|+.+ +|....+|+++|.+|..+|++++|+.+|++++.+
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9997 4667889999999999999999999999999987
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.93 E-value=8.4e-09 Score=102.55 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=104.5
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.......++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---- 79 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---- 79 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----
Confidence 3445778899999999999999999999999875 3445678999999999999999999999999986
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 1034 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ 1034 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+ .|....++.+++.++..+|+
T Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 3456778999999999999999999999999986 34556678888998887664
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=5e-09 Score=122.80 Aligned_cols=215 Identities=11% Similarity=0.025 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHH
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLL-------AVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~L-------A~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
-.+.+|..|.-+ ..+++.+|+.+|.+++.+ +|..+.+|..+ +.++..++++.+++..+++++.+
T Consensus 6 ~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l 76 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI 76 (282)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC
T ss_pred HHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 356788888876 589999999999999988 78888999999 89999999999999999998886
Q ss_pred HHHhcCCCCh-------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 965 NERELGLDHP-------------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 965 ~Er~lG~Dhp-------------~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
.-..++.... ..-..+..+|.++...|+|++|.+.|..++. .+|... .++.+|.++..
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--------~~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--------AGSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--------TTCHHH-HHHHHHHHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------cCCchH-HHHHHHHHHHH
Confidence 5444332111 1135566789999999999999999887764 245666 88999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000191 1032 LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY 1111 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~ 1111 (1888)
.++|++|+.+|++++.. ++......++++||.++..+|++++|+.+|+++.. |+..+.
T Consensus 148 ~~r~~dA~~~l~~a~~~------~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~---------- 205 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKW------PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEA---------- 205 (282)
T ss_dssp TTCHHHHHHHHTTGGGC------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTT----------
T ss_pred cCCHHHHHHHHHHhhcc------CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCcc----------
Confidence 99999999999866432 12222356889999999999999999999987741 111010
Q ss_pred HHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcc
Q 000191 1112 FESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGN 1175 (1888)
Q Consensus 1112 L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dS 1175 (1888)
...+.+.++|.++..+|+.++|...|++++.+...
T Consensus 206 -----------------------------~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 206 -----------------------------CARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp -----------------------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred -----------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 13456788999999999999999999999987643
No 137
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.93 E-value=6e-08 Score=131.27 Aligned_cols=221 Identities=16% Similarity=0.101 Sum_probs=149.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHH------HHHhcCC--------CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000191 900 SKTALDKGKLEDAVTYGTKALAK------LVAVCGP--------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 965 (1888)
Q Consensus 900 G~~~l~qGd~dEAie~~eeAL~l------~eqi~G~--------dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~ 965 (1888)
|.++...|.+++|..+|+++-.. +.+..+. .......+|+.+|.++...|++++|+..|.+|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 77778888888887777765321 1100011 11123568999999999999999999999776
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------cCC--------CChhHHHHHHHH
Q 000191 966 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT------------CGP--------SHPNTAATYINV 1025 (1888)
Q Consensus 966 Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki------------~G~--------dhP~~a~a~~NL 1025 (1888)
+....|.++|.++...|+|++|+++|..|+...... .+. ..+.. ..+.++
T Consensus 1132 ---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~i 1201 (1630)
T 1xi4_A 1132 ---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQV 1201 (1630)
T ss_pred ---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHH
Confidence 235678889999999999999999998877543110 000 11112 245578
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 000191 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDA 1105 (1888)
Q Consensus 1026 A~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a 1105 (1888)
|..|...|+|++|+.+|.+| ..|..+|.+|..+|++++|++.+++|.. ..+. .
T Consensus 1202 Gd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvkLge~q~AIEaarKA~n----------~~aW-k 1254 (1630)
T 1xi4_A 1202 GDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANS----------TRTW-K 1254 (1630)
T ss_pred HHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHHhCCHHHHHHHHHHhCC----------HHHH-H
Confidence 88888888888888888874 2567788888899999999888888732 2211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1106 AAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1106 ~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
....+.+..+.+..|....... ....+.+..++..|..+|.|++|+.++++++.+.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I------------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI------------VVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh------------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 1122344455555554433210 0123456788889999999999999999998754
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.92 E-value=1.5e-09 Score=118.21 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=114.4
Q ss_pred HHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh--------
Q 000191 904 LDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD-------- 975 (1888)
Q Consensus 904 l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~-------- 975 (1888)
...|++++|.+.+...... .+..+..+..+|.+++..|+|++|+.+|++|+.+.... .+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~ 84 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKK 84 (198)
T ss_dssp -------CCCSGGGCCHHH--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHH
Confidence 3457777777777655433 24456789999999999999999999999999874321 11111
Q ss_pred --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Q 000191 976 --TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLL 1053 (1888)
Q Consensus 976 --ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~ 1053 (1888)
...++.++|.+|..+|++++|+.++.+++.+ +|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---- 152 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---- 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----
Confidence 1478999999999999999999999999986 34556789999999999999999999999999873
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHH
Q 000191 1054 GPDHIQTAASYHAIAIALSLMEAYPLSV 1081 (1888)
Q Consensus 1054 G~d~~~tA~al~nLA~ay~~lGdydeAl 1081 (1888)
+ ....++..++.++..++++.++.
T Consensus 153 -p---~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 153 -P---NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -T---TCHHHHHHHHHHHHHHHHHHC--
T ss_pred -C---CcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33567788899998888877766
No 139
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.92 E-value=8.5e-09 Score=108.64 Aligned_cols=110 Identities=13% Similarity=0.071 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD----------HPDTMKSYGDLAVFYYRLQHTELALKYVK 1001 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D----------hp~ta~ay~nLA~ly~~lGdyeeALey~~ 1001 (1888)
...+..+..+|..++..|+|++|+.+|.+|+.+.......+ .+....+|.++|.+|..+|+|++|+.++.
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34578899999999999999999999999999866543211 34567899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1002 RALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1002 kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|+.+ +|....+++++|.+|..+|++++|+.+|++++++.
T Consensus 88 ~al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 88 EVLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 99987 35567889999999999999999999999999984
No 140
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=2.7e-09 Score=114.43 Aligned_cols=166 Identities=11% Similarity=-0.031 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
..+..+|..+...|++++|+.+|++++.+ +|....++.++|.+|...|++++|+.+|++++.+ .+ +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p-~ 72 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE-----YQ-D 72 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GC-C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cC-C
Confidence 35678899999999999999999999987 3667889999999999999999999999998764 23 3
Q ss_pred hhHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1016 PNTAATYINVAMM-EEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1016 P~~a~a~~NLA~i-y~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
+.. +..++.+ +...+...+|+.+|++++++. |....+++++|.+|...|++++|+.+|++++++
T Consensus 73 ~~~---~~~~~~~~~~~~~~~~~a~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---- 137 (176)
T 2r5s_A 73 NSY---KSLIAKLELHQQAAESPELKRLEQELAAN--------PDNFELACELAVQYNQVGRDEEALELLWNILKV---- 137 (176)
T ss_dssp HHH---HHHHHHHHHHHHHTSCHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred hHH---HHHHHHHHHHhhcccchHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----
Confidence 432 2223433 223334446899999998863 334578889999999999999999999887732
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1095 LGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL 1172 (1888)
.+++ .....+..++.+|..+|++++|+.+|++++..
T Consensus 138 -~p~~-----------------------------------------~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 138 -NLGA-----------------------------------------QDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -CTTT-----------------------------------------TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -Cccc-----------------------------------------ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 1211 00125678889999999999999999998864
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=2.8e-08 Score=104.56 Aligned_cols=103 Identities=15% Similarity=-0.043 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.......++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++|+.+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---- 84 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM---- 84 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 4456778899999999999999999999999987 4556778999999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.|....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 85 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 85 ----DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34556789999999999999999999999999874
No 142
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.91 E-value=1.5e-08 Score=118.49 Aligned_cols=170 Identities=11% Similarity=0.053 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG-AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~-ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
..++..|..+...|++++|+..|++++.+ +|.... +|..+|.++..+|++++|+..|++|+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~------- 164 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA------- 164 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------
Confidence 45667788889999999999999999975 232223 88999999999999999999999998751
Q ss_pred ChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~-lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+.....|...|.+... .|++++|+.+|++++.+. |....++.++|.++..+|++++|+.+|++|+...
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-- 233 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-- 233 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--
Confidence 2334556666666544 799999999999999863 3445778899999999999999999999998742
Q ss_pred hcCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1052 LLGPDHI-QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1052 ~~G~d~~-~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
.-.+ ....++..++..+...|+++.|...++++++++.
T Consensus 234 ---~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 234 ---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp ---SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred ---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 0012 2345677889999999999999999999997753
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.91 E-value=1e-08 Score=108.32 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=93.5
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
....+..++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|+.+|++++|+.++++++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV---- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----
Confidence 3456788999999999999999999999999987 4556789999999999999999999999999997
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
+|....+|+++|.+|..+|++++|+.+|++++.+.
T Consensus 75 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 75 ----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45668899999999999999999999999999874
No 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.90 E-value=1.5e-08 Score=109.18 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---C-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---D-HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~---D-hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+..+.++|..++.+|+|++|+..|++||.+....... + .+....+|.|+|.++..+|+|++|+.+|.+||+++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 35678899999999999999999999999985331000 0 1123459999999999999999999999999998766
Q ss_pred hcCCCChhHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 1010 TCGPSHPNTAATY----INVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 1010 i~G~dhP~~a~a~----~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
. +.-+|+...+| +++|.+|..+|++++|+.+|++|+++...-
T Consensus 90 ~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 90 R-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp H-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred c-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 5 45568888888 999999999999999999999999997554
No 145
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.89 E-value=3.5e-08 Score=122.64 Aligned_cols=222 Identities=11% Similarity=0.069 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhc
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQQKALDINEREL 969 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG---dyeeAl~~~eKAL~I~Er~l 969 (1888)
....+.+|..|...+.+++++........... ..++. ++++||.+|...| ++++|+.+|++|+..
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~----~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----- 208 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAAL----NTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR----- 208 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT----TTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH----cCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----
Confidence 34567788999999988777766444333221 22343 8899999999999 999999999999875
Q ss_pred CCCChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-H--HHCCCHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRL----QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-E--EGLGNVHVALRYL 1042 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~l----GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i-y--~~lG~yeeAle~L 1042 (1888)
| +..+..+++||.+|... +++++|+.+|+++. +....++++||.+ | ...+++++|+.+|
T Consensus 209 g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~ 274 (452)
T 3e4b_A 209 G---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKYL 274 (452)
T ss_dssp T---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 2 34456678999999776 79999999999985 1224678899998 5 5789999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--
Q 000191 1043 HKALKCNQRLLGPDHIQTAASYHAIAIALSLME-----AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK-- 1115 (1888)
Q Consensus 1043 ekALei~ek~~G~d~~~tA~al~nLA~ay~~lG-----dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk-- 1115 (1888)
++|++. ....++++||.+|. .| ++++|+.+|++|. ..++. +...|+.++..
T Consensus 275 ~~Aa~~----------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~~~---A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 275 DNGRAA----------DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GREVA---ADYYLGQIYRRGY 332 (452)
T ss_dssp HHHHHT----------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTCHH---HHHHHHHHHHTTT
T ss_pred HHHHHC----------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCCHH---HHHHHHHHHHCCC
Confidence 999853 14567889999998 56 9999999998876 34443 34444444332
Q ss_pred ----HHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Q 000191 1116 ----AFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAKV 1172 (1888)
Q Consensus 1116 ----a~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~----qGdyeEAleyyeKALeL 1172 (1888)
..+.+........ ..++ ...++.||.+|.. ..++.+|+.+|++|.+.
T Consensus 333 g~~~d~~~A~~~~~~Aa-------~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAA-------RNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TSSCCHHHHHHHHHHHH-------TTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHH-------hhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 3344433332211 1111 2367889999874 56999999999998763
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.88 E-value=1.1e-08 Score=111.35 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChh----------HHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRM----------TAGAYSLLAVVLYHTGDFNQATIYQQ 959 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe----------~A~ay~~LA~ly~~lGdyeeAl~~~e 959 (1888)
...+..++.+|..++.+|+|++|+.+|++++.+.... .+... ...++.++|.+|..+|++++|+.+++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 112 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3457788999999999999999999999999864221 11101 14789999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 000191 960 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 1039 (1888)
Q Consensus 960 KAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAl 1039 (1888)
+++.+ ++....+++++|.+|..+|++++|+.+|++++.+ +|....++.+++.++..++++.++.
T Consensus 113 ~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 113 KVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 3566789999999999999999999999999986 2444567888999988887777666
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.88 E-value=3.2e-08 Score=102.42 Aligned_cols=105 Identities=16% Similarity=0.059 Sum_probs=93.4
Q ss_pred CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 930 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 930 dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
.+|.....++.+|.+++..|++++|+.+|++++.+ +|....++.+||.+|..+|++++|+.+|++++.+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 81 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM--- 81 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---
Confidence 35777889999999999999999999999999986 4666788999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 1010 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 1010 i~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+ ....+++++|.+|..+|++++|+.+|++++++..
T Consensus 82 --~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 82 --DI---NEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp --CT---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --CC---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 23 3445688999999999999999999999999863
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.86 E-value=4.2e-08 Score=95.70 Aligned_cols=118 Identities=29% Similarity=0.472 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+.++..+|.++...|++++|+.++++++.. .+....++.++|.+|...|++++|+.++++++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------- 72 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------- 72 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------
Confidence 3678999999999999999999999999886 2445678899999999999999999999999875
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcC
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
.|....++.++|.+|...|++++|+.+|++++++. + ....++..+|.++...|
T Consensus 73 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 -DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----P---NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHHC
T ss_pred -CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHhcc
Confidence 23345678899999999999999999999999863 2 23456777888877654
No 149
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.85 E-value=3.1e-08 Score=106.81 Aligned_cols=118 Identities=19% Similarity=0.110 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcC----CCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCG----PYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 966 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G----~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E 966 (1888)
..+..++..|..++..|+|++|+..|++||.+...... ...+..+.+|.++|.++..+|+|++|+..|.+||.++.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 35788999999999999999999999999998543100 00122456999999999999999999999999999866
Q ss_pred HhcCCCChhhHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 967 RELGLDHPDTMKSY----GDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 967 r~lG~Dhp~ta~ay----~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
+. +.-+|+...+| +++|.++..+|++++|+.+|++|+++.-.
T Consensus 89 ~~-~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 89 RR-GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HH-CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cc-ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 65 45567788888 99999999999999999999999998644
No 150
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.85 E-value=1.4e-08 Score=126.41 Aligned_cols=136 Identities=17% Similarity=0.129 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-------CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP-------YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~-------dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
...+..++.+|..++.+|+|++|+.+|++|+.+....... ..+..+.+|.++|.+|+.+|+|++|+.+|++|+
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3457788999999999999999999999999975321000 012336899999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1041 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~ 1041 (1888)
.+ +|....+|+++|.+|..+|++++|+.+|++|+.+ .|....++.+++.++..++++++|...
T Consensus 345 ~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 345 GL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97 4566889999999999999999999999999985 355667889999999999998877653
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.85 E-value=3e-08 Score=100.10 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
+..+..+..+|.+++.+|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 455788999999999999999999999999987 3556789999999999999999999999999986
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+|....++.++|.+|..+|++++|+.+|++++++...
T Consensus 73 ---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 ---DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2445678999999999999999999999999998755
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.85 E-value=5.5e-08 Score=97.13 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.+++.+|.+++..|++++|+.++++++.. .++++....++..+|.+|..+|++++|+.+|++++.. .+++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 72 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTH 72 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCC
Confidence 35788999999999999999999999886 3556666689999999999999999999999999985 3566
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIA 1068 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA 1068 (1888)
+....++.++|.+|..+|++++|+.+|+++++.. +++.....+...+.
T Consensus 73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQ 120 (129)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHH
Confidence 6667889999999999999999999999999874 55554444443333
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=5.3e-08 Score=100.73 Aligned_cols=103 Identities=17% Similarity=-0.033 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000191 889 SSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 968 (1888)
Q Consensus 889 ~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~ 968 (1888)
.......++.+|..++..|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.+|++|+.+
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 81 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM---- 81 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3455677889999999999999999999999987 4566778999999999999999999999999997
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.|....+++++|.+|..+|++++|+.+|++++.+.
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34556788999999999999999999999999875
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.83 E-value=5.7e-08 Score=95.81 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+.++..+|.+++..|++++|+.++++++.. .+....++.++|.+|..+|++++|+.+|++++.+.... .
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~ 72 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-R 72 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-T
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-c
Confidence 34678999999999999999999999999986 24456889999999999999999999999999986542 3
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+++....++.++|.+|..+|++++|+.+|++++++
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 344445788999999999999999999999999986
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.83 E-value=1.5e-08 Score=117.84 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+..+..+|.+|+..|++++|+.+|++|+.+ +|....+|.++|.+|..+|++++|+.+|++|+.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3568899999999999999999999999987 4566789999999999999999999999999874
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+|....+++++|.+|..+|++++|+.+|++++++...
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4556788999999999999999999999999998754
No 156
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.82 E-value=4e-10 Score=141.38 Aligned_cols=130 Identities=19% Similarity=0.282 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
+..+.++..+|.+|+.+|++++|+.+|++|+.+ +|....+|.++|.+|..+|++++|+.+|++|+++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----- 69 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----- 69 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 455667888999999999999999999999997 5667899999999999999999999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH--HHHcCChHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIA--LSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~a--y~~lGdydeAle~lq 1085 (1888)
+|....+++++|.+|..+|++++|+.+|++|+++. ++. ..++.+++.+ +..+|++++|+..++
T Consensus 70 ---~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 70 ---DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHD---KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTC---TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46667889999999999999999999999999873 322 2355666776 888899999999988
No 157
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.81 E-value=1.7e-07 Score=127.08 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh---
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE--- 968 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~--- 968 (1888)
....++.+|..+...|++++|+..|.+| .....|..+|.++.++|+|++|+++|+.|.......
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Id 1170 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE 1170 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccccc
Confidence 3567888999999999999999999776 223578889999999999999999998877443110
Q ss_pred --c-------C--------CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000191 969 --L-------G--------LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG 1031 (1888)
Q Consensus 969 --l-------G--------~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~ 1031 (1888)
+ + .+.+.. ..+.++|..|+..|+|++|+.+|.+| ..|..+|.+|..
T Consensus 1171 t~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA----------------~ny~rLA~tLvk 1233 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVH 1233 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh----------------hHHHHHHHHHHH
Confidence 0 0 011112 34668999999999999999999986 246778999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-----------------HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1032 LGNVHVALRYLHKALKCNQ-----------------RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1032 lG~yeeAle~LekALei~e-----------------k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
+|++++|++++++|..... ...|......+..+..++..|..+|.|++|+.++++++.+
T Consensus 1234 Lge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L---- 1309 (1630)
T 1xi4_A 1234 LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---- 1309 (1630)
T ss_pred hCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----
Confidence 9999999999998855421 0011111123345667888899999999999999888743
Q ss_pred cCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1095 LGPDDLRTQDAAAWL--EYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1095 LG~dh~~tl~a~~~L--a~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
.+.|.....-+..+ .+--.+..+..+.+......+.. +..- ....++..+.-+|..-|+|++|+..+-..
T Consensus 1310 -eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~-~r~~---e~~~lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1310 -ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV-LRAA---EQAHLWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred -ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH-hHHH---HHHHHHHHHHHHHHhcccHHHHHHHHHhc
Confidence 22332222111111 11122233333333222211110 0000 23457788888899999999998555444
No 158
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.81 E-value=2.5e-08 Score=121.19 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL--------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~l--------G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
+..+..+|.+|+.+|+|++|+.+|++|+.+..... ....+....+|.++|.+|..+|+|++|+.+|++|+.+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 35688899999999999999999999999765420 0124667889999999999999999999999999974
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Q 000191 1007 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQH 1083 (1888)
Q Consensus 1007 ~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~ 1083 (1888)
+|....+++++|.+|..+|++++|+.+|++|+++. ++ ...++..|+.++..++++++|...
T Consensus 303 --------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-----P~---~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 --------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-----PE---DKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999874 32 345677889999888888777553
No 159
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.81 E-value=9.3e-08 Score=93.21 Aligned_cols=117 Identities=27% Similarity=0.456 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..+...|++++|+.+|++++.. .+....++..+|.+|...|++++|+.++++++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------
Confidence 567788899999999999999999999876 2344568899999999999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG 1033 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG 1033 (1888)
.+....++.++|.+|...|++++|+.+|++++.+ +|....++.++|.++..+|
T Consensus 73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 2445678899999999999999999999999875 2344566778888876544
No 160
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.81 E-value=3.2e-08 Score=120.18 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC--------GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKAL 962 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~--------G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL 962 (1888)
..+..++.+|..++.+|++++|+.+|++|+.+..... ....+..+.+|.++|.+|+.+|++++|+.++++|+
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3467788999999999999999999999999654420 01356678899999999999999999999999999
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 963 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 963 ~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
.+ +|....+|+++|.+|..+|++++|+.+|++|+.+. |....++..++.++..+++++++.+
T Consensus 301 ~~--------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 EI--------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 46678899999999999999999999999999862 3345667788999888888777654
No 161
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.80 E-value=2.1e-08 Score=106.60 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=100.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000191 945 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYIN 1024 (1888)
Q Consensus 945 y~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~N 1024 (1888)
+...|++++|+.++++++.. +|....++..+|.+|...|++++|+.+|++++.+. |....++.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--------GENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------CSCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHH
Confidence 34578999999999999986 35567889999999999999999999999999873 233567889
Q ss_pred HHHH-HHHCCCH--HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1025 VAMM-EEGLGNV--HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1025 LA~i-y~~lG~y--eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
+|.+ |...|++ ++|+.+|++++++. + ....+++.+|.+|..+|++++|+.++++++.+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~-----p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALD-----S---NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHC-----T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhC-----C---CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999 8899999 99999999999873 2 33567889999999999999999999999865
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.79 E-value=1.7e-07 Score=93.55 Aligned_cols=116 Identities=17% Similarity=0.110 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.++.+|..++..|++++|+.+|++++.. .+.++....++..+|.+|+.+|++++|+.++++++.. .++++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~ 73 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHD 73 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCc
Confidence 4678899999999999999999999886 3556666689999999999999999999999999986 34555
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NL 1025 (1888)
....++.++|.+|..+|++++|+.+|++++... ++++....+...+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l 119 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERL 119 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHH
Confidence 568899999999999999999999999999852 4555444443333
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.79 E-value=3.2e-08 Score=115.05 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.+ +|..+.++.++|.+|..+|++++|+.++++|+.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 567888999999999999999999999987 4556789999999999999999999999999875
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|....+++++|.+|..+|++++|+.+|++++.+...... .....+. .... ..++..+..... ..
T Consensus 68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-~~~~~~~----~~~~------~~~~~~~~~~~~----~~ 132 (281)
T 2c2l_A 68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-NFGDDIP----SALR------IAKKKRWNSIEE----RR 132 (281)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CCCSHHH----HHHH------HHHHHHHHHHHH----TC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh-hHHHHHH----HHHH------HHHHHHHHHHHH----HH
Confidence 4667789999999999999999999999999998643210 0001111 1111 122222222111 11
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAAR 1124 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~ 1124 (1888)
-...... ...++.++ .|++++|++.+++|++ +.+++.........+..-..+.++.+..+.
T Consensus 133 -~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f 193 (281)
T 2c2l_A 133 -IHQESEL---HSYLTRLI--AAERERELEECQRNHE-----GHEDDGHIRAQQACIEAKHDKYMADMDELF 193 (281)
T ss_dssp -CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGT-----TTSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhc-----cccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1222233 22334443 6899999999998885 356766666666666666655555555544
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.78 E-value=1.6e-07 Score=94.76 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++..|++++|+.+|++++.+ .+....++.++|.+|..+|++++|+.++++++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 72 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 72 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 667889999999999999999999999987 3455679999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
+|....++.++|.+|..+|++++|+.+|++++.+...
T Consensus 73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 3556789999999999999999999999999998654
No 165
>1sgo_A HSPC210, protein C14ORF129; HR969, structure, human protein, NESG, structural genomics, HS.4104 HOMO sapiens, NESG cluster ID 18152.; NMR {Homo sapiens} SCOP: d.82.3.1
Probab=98.77 E-value=6.5e-09 Score=107.47 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=63.8
Q ss_pred ccccccccccccCCCChhhhhcccccccccCCCCCceEEEEEEEeCCceEEEEEeccceeecCC---------Cccccch
Q 000191 183 LSSFYEFFSLSHLTPPLQFIRKAPKRRVEEISPDDHLLSLDVKLCNGKMVNVEACRKGFYSVGK---------QRILCHN 253 (1888)
Q Consensus 183 l~~~~k~~s~S~wnPPp~~~r~~~~~~~~~~~~~Gdl~YL~v~t~Eg~~~~ITa~~~GFyvn~~---------~~~~~Hs 253 (1888)
+..+++.|.+|..+|++. |+.||+|+|.||+.|+||-+.+||||++. ..-.+-+
T Consensus 44 v~f~V~~I~vS~~LP~t~-----------------~liyiNv~T~Eg~~yCIelt~kGf~Vvs~~~d~~d~~~~~~~fET 106 (139)
T 1sgo_A 44 VLFAVNNMFVSKSLRCAD-----------------DVAYINVETKERNRYCLELTEAGLKVVGYAFDQVDDHLQTPYHET 106 (139)
T ss_dssp HGGGSSEEEECCSSCEET-----------------TEEEEEEECTTCCEEEEEEETTEEEEEESSTTCCCTTCCCCEESS
T ss_pred HHHHhheEEeeccCCCCC-----------------ceEEEEEEEecCCeEEEEEEccEEEEecccCCccCcccccccccC
Confidence 457899999999999873 69999999999999999999999999732 1223559
Q ss_pred HHHHHhhhcHHHHHHHHHHHH
Q 000191 254 IVDLLGQLSRAFDNAYNELMN 274 (1888)
Q Consensus 254 Lv~LL~~iSp~F~~~f~~l~k 274 (1888)
|..||+.|||.|++.|...+-
T Consensus 107 l~~LL~~iSP~fr~~Fg~~L~ 127 (139)
T 1sgo_A 107 VYSLLDTLSPAYREAFGNALL 127 (139)
T ss_dssp SHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHH
Confidence 999999999999999995443
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.76 E-value=1.1e-07 Score=93.62 Aligned_cols=106 Identities=18% Similarity=0.247 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.. .+....++..+|.+|..+|++++|+.++++++.+.... ..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~ 73 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-RE 73 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-ch
Confidence 3567888999999999999999999999987 34446789999999999999999999999999986542 23
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
++.....++.++|.+|...|++++|+.+|++++.+
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444789999999999999999999999999985
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=1.2e-07 Score=91.67 Aligned_cols=114 Identities=24% Similarity=0.226 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.. .|....++..+|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence 3567888999999999999999999999986 3444678999999999999999999999999986
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMME 1029 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy 1029 (1888)
.+....++.++|.+|..+|++++|+.+|++++.+ . |....++..++.+.
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH-----E---ANNPQLKEGLQNME 116 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----C---TTCHHHHHHHHHHH
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-----C---CCCHHHHHHHHHhh
Confidence 3455778999999999999999999999999874 2 33344555566553
No 168
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.74 E-value=3e-07 Score=115.67 Aligned_cols=235 Identities=14% Similarity=0.038 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000191 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-------TGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 982 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-------lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~n 982 (1888)
..|+..|++|+.. .|....+|..+|.++.. +|+++.|..+..+|+.++++.+....|.....+..
T Consensus 255 ~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4778899999887 24456789999999886 79988333333333333333322124667888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 000191 983 LAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 1062 (1888)
Q Consensus 983 LA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~ 1062 (1888)
+|.++...|++++|...|++++.+ .+.++ ..++.++|.++...|++++|+.+|++|++.. +.. ..
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-----~~~---~~ 391 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI-----EDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDA-----RTR---HH 391 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS-----SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-----TCC---TH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc-----cccCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-----CCc---hH
Confidence 999999999999999999999974 22222 3578899999999999999999999998752 221 22
Q ss_pred HHHHHHHH-HHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCcc
Q 000191 1063 SYHAIAIA-LSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLS 1141 (1888)
Q Consensus 1063 al~nLA~a-y~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~s 1141 (1888)
.+...|.+ +...|++++|...|+++++.. ++++.....+..+ ....+..+.+..+........ ..+...
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-----p~~~~~~~~~~~~-~~~~g~~~~Ar~~~~~al~~~----~~~~~~ 461 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKY-----GDIPEYVLAYIDY-LSHLNEDNNTRVLFERVLTSG----SLPPEK 461 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-----TTCHHHHHHHHHH-HTTTTCHHHHHHHHHHHHHSC----CSCGGG
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHC-----CCCHHHHHHHHHH-HHhCCCHhhHHHHHHHHHhcc----CCCHHH
Confidence 33334444 346899999999999999764 5665444332222 112234444444433221110 001112
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1142 VSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1142 vaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
...++..........|+.+.|..+++++++....-.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 344666667777889999999999999999987544
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=1.8e-07 Score=90.45 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP 1013 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~ 1013 (1888)
.+..+..+|.++...|++++|+.++++++.. .|....++.++|.+|..+|++++|+.++++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------
Confidence 3568899999999999999999999999986 3445778999999999999999999999999986
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1014 SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1014 dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.|....++.++|.+|..+|++++|+.+|++++++
T Consensus 68 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 68 -KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 2444677899999999999999999999999875
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.70 E-value=2.2e-08 Score=119.76 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc--CCC-------ChhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC--GPY-------HRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~--G~d-------hpe~A~ay~~LA~ly~~lGdyeeAl~~~eK 960 (1888)
...+..++.+|..++..|+|++|+.+|++|+.+..... ... ......+|.++|.+|..+|+|++|+.++++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34577889999999999999999999999998732210 000 000114899999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HCCCHHHHH
Q 000191 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-GLGNVHVAL 1039 (1888)
Q Consensus 961 AL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~-~lG~yeeAl 1039 (1888)
|+.+ +|....+|+++|.+|..+|++++|+.+|++|+.+. |....++.+|+.+.. ..+..+++.
T Consensus 256 al~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 256 VLTE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHHH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 45667899999999999999999999999998762 444566777887744 456677888
Q ss_pred HHHHHHHHHH
Q 000191 1040 RYLHKALKCN 1049 (1888)
Q Consensus 1040 e~LekALei~ 1049 (1888)
.+|.+++...
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888887654
No 171
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.70 E-value=2.1e-08 Score=119.92 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---------PDTMKSYGDLAVFYYRLQHTELALKYVKRAL 1004 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh---------p~ta~ay~nLA~ly~~lGdyeeALey~~kAL 1004 (1888)
.+..+..+|.+|+..|+|++|+.+|++|+.+......... .....+|+++|.+|..+|+|++|+.+|++|+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567889999999999999999999999987322100000 0001488999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHH
Q 000191 1005 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQH 1083 (1888)
Q Consensus 1005 eL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~-~lGdydeAle~ 1083 (1888)
.+ +|....+++++|.+|..+|++++|+.+|++++++. +....++..|+.+.. ..+..+++...
T Consensus 258 ~~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--------p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 258 TE--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--------PDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp HH--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred Hh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 35557789999999999999999999999998774 234456667777743 45666777777
Q ss_pred HHHHHHH
Q 000191 1084 EQTTLQI 1090 (1888)
Q Consensus 1084 lqkALeI 1090 (1888)
|++++..
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 7777644
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.70 E-value=7.3e-08 Score=97.88 Aligned_cols=95 Identities=18% Similarity=0.097 Sum_probs=86.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
++.+|..++..|++++|+..|++++.+ +|..+.++..||.++..+|++++|+..+++|+.+ .|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~ 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------DPK 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 567789999999999999999999987 5666789999999999999999999999999997 456
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
...++.+||.+|..+|++++|+.+|++++.+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6778999999999999999999999999875
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.3e-07 Score=95.88 Aligned_cols=102 Identities=18% Similarity=0.115 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.+ .++++....++.++|.+|..+|++++|+.++++++.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK------- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-------
Confidence 4677889999999999999999999999875 2334445789999999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
++....++.++|.+|..+|++++|+.+|++++.+
T Consensus 95 -~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 95 -DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3445788999999999999999999999999986
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=8.2e-08 Score=97.41 Aligned_cols=106 Identities=15% Similarity=0.126 Sum_probs=91.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.+..+..+..+|..++..|++++|+.+|++++.+ .++++....++.++|.+|..+|++++|+.+|++++.+
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---- 94 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---- 94 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----
Confidence 3556788999999999999999999999999875 2333345789999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
+|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 95 ----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 95 ----DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ----TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 23446778999999999999999999999999873
No 175
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.67 E-value=2e-07 Score=115.86 Aligned_cols=223 Identities=16% Similarity=0.031 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.++.+|..|...+...++...++........ ....+++.||.+|...+.+++++....+.... .. ..++
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~-------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~---a~-~~~~ 176 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA-------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKA---AL-NTTD 176 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH---HT-TTCT
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH---HH-cCCH
Confidence 4556677777766655443333322222211 12357889999999999777776653333322 21 1233
Q ss_pred hhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQ---HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL----GNVHVALRYLHKALK 1047 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lG---dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l----G~yeeAle~LekALe 1047 (1888)
. ++++||.+|...| ++++|+.+|+++... | +..+..+++||.+|... +++++|+.+|+++.
T Consensus 177 ~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~-----g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 177 I---CYVELATVYQKKQQPEQQAELLKQMEAGVSR-----G---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp T---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----T---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred H---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 3 8899999999999 999999999999873 2 23355668899999765 79999999999986
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH------HHH
Q 000191 1048 CNQRLLGPDHIQTAASYHAIAIA-L--SLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK------AFE 1118 (1888)
Q Consensus 1048 i~ek~~G~d~~~tA~al~nLA~a-y--~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk------a~e 1118 (1888)
+....++++||.+ | ...+++++|+.+|++|.+. .++. +..+|+.++.. ..+
T Consensus 245 ----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-------g~~~---A~~~Lg~~y~~G~g~~~d~~ 304 (452)
T 3e4b_A 245 ----------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-------DQPR---AELLLGKLYYEGKWVPADAK 304 (452)
T ss_dssp ----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-------TCHH---HHHHHHHHHHHCSSSCCCHH
T ss_pred ----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-------CCHH---HHHHHHHHHHcCCCCCCCHH
Confidence 1234678899998 4 4689999999999998732 2443 34444444332 444
Q ss_pred HHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1119 QQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDT----KGRNVSTLKRKTYVAK 1171 (1888)
Q Consensus 1119 ~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~----qGdyeEAleyyeKALe 1171 (1888)
.+........ . .....++.||.+|.. ..++++|+.+|+++.+
T Consensus 305 ~A~~~~~~Aa-~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 305 AAEAHFEKAV-G----------REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HHHHHHHTTT-T----------TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh-C----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 4444443332 1 234578999999876 4499999999999986
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=8.9e-08 Score=97.26 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
..+..+|.++...|++++|+..+++++.+ +|....++.+||.++..+|++++|+.+|++|+.+ .
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 81 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------D 81 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34678999999999999999999999987 4667889999999999999999999999999986 3
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1016 PNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1016 P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455688999999999999999999999998764
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.63 E-value=1.4e-06 Score=105.15 Aligned_cols=238 Identities=10% Similarity=0.067 Sum_probs=168.8
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000191 900 SKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 900 G~~~l~qGd~-dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG-dyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
-+..+..+.+ ++|+.++.++|.+ +|....+++..+.++..+| .+++++.++.+++.. +|...
T Consensus 60 ~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny 123 (349)
T 3q7a_A 60 FRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSY 123 (349)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcH
Confidence 3444555554 6899999999987 6777789999999999999 599999999999865 57788
Q ss_pred HHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHH
Q 000191 978 KSYGDLAVFYYRL-Q-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH--------VALRYLHKALK 1047 (1888)
Q Consensus 978 ~ay~nLA~ly~~l-G-dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~ye--------eAle~LekALe 1047 (1888)
.++++.+.++..+ + +++++++++.+++.+ +|....+++..+.++..+|.++ +++++++++++
T Consensus 124 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 124 QVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 8999999999998 7 899999999988853 5667788999999999888887 88898888887
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH----
Q 000191 1048 CNQRLLGPDHIQTAASYHAIAIALSLMEA-------YPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKA---- 1116 (1888)
Q Consensus 1048 i~ek~~G~d~~~tA~al~nLA~ay~~lGd-------ydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka---- 1116 (1888)
.. +....++++.+.++..++. ++++++++++++.+ .+++........++..-....
T Consensus 196 ~d--------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 196 VD--------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HC--------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred hC--------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCCcccc
Confidence 63 3445678888999988887 67888888888754 566665544444432211111
Q ss_pred ---------------HHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccc
Q 000191 1117 ---------------FEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNF 1176 (1888)
Q Consensus 1117 ---------------~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi 1176 (1888)
........... ............-.-++.+|+.+|..+|+.++|++.|+...+-.|-+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPM--PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHGGGTC--------------CCC--CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred cccccccccccccccchhHHHHHHHH--HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 00011111111 10000000112334588999999999999999999998866554443
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.60 E-value=7.1e-08 Score=92.65 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+.++..+|.+++.+|++++|+.++++++.+ .+....++.++|.+|..+|++++|+.+|++++.+ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~ 70 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV-----I 70 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----S
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C
Confidence 33457889999999999999999999999986 2445678999999999999999999999999975 2
Q ss_pred CCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGL-GNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~l-G~yeeAle~LekALei 1048 (1888)
++ .....++.++|.+|..+ |++++|+.++++++..
T Consensus 71 ~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 ED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred cc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 22 01467789999999999 9999999999998764
No 179
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.59 E-value=3.3e-08 Score=122.09 Aligned_cols=224 Identities=13% Similarity=0.074 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+..+|..++.+|++++|++.|.++- ....|..++..+...|++++|+.+++.++... +
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~-------------D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~--------~ 92 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKAD-------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------R 92 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC-------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------c
Confidence 55677899999999999999997641 12367888889999999999999998887641 1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
+ ..+...|+.+|.++|++.++.++++. |.. .++.++|..|...|+|++|+.+|.++
T Consensus 93 ~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 93 E-SYVETELIFALAKTNRLAELEEFING-------------PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp -----------------CHHHHTTTTTC-------------C-----------------CTTTHHHHHHHT---------
T ss_pred c-chhHHHHHHHHHHhCCHHHHHHHHcC-------------CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 1 34567899999999999998877642 222 38899999999999999999999866
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 1134 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~ 1134 (1888)
..+..||.+|..+|+|++|++.+++|. ++.+.... ..+....+.++.|+..... ..
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~~~~Wk~v-~~aCv~~~ef~lA~~~~l~---L~--- 204 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKAN----------STRTWKEV-CFACVDGKEFRLAQMCGLH---IV--- 204 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------CHHHHHHH-HHHHHHTTCHHHHHHTTTT---TT---
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHcC----------CchhHHHH-HHHHHHcCcHHHHHHHHHH---HH---
Confidence 246788999999999999999999882 33332221 1234445556665433221 11
Q ss_pred hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCCCCCCCCcchhhhhccc
Q 000191 1135 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESS 1197 (1888)
Q Consensus 1135 as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~~a~~eIa~LEikyet~ 1197 (1888)
.++ +-+..+...|.+.|++++|+.++++++.+.+.- ...--++..+..||.-.
T Consensus 205 ---~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah----~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 205 ---VHA---DELEELINYYQDRGYFEELITMLEAALGLERAH----MGMFTELAILYSKFKPQ 257 (449)
T ss_dssp ---TCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC----HHHHHHHHHHHHTTCHH
T ss_pred ---hCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH----HHHHHHHHHHHHhcCHH
Confidence 111 123457788999999999999999998764221 11113445566666544
No 180
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.56 E-value=9.7e-07 Score=110.95 Aligned_cols=168 Identities=15% Similarity=0.049 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000191 893 GRQLLESSKTALD-------KGKLE-------DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ 958 (1888)
Q Consensus 893 A~~LlelG~~~l~-------qGd~d-------EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~ 958 (1888)
...++..|..+.. .|+++ +|+..|++|+.. ..|....++..+|.++..+|++++|...|
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-------~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-------LLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-------TCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3445556666664 79987 677777777641 24556778999999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHHCCCHHH
Q 000191 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM-EEGLGNVHV 1037 (1888)
Q Consensus 959 eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i-y~~lG~yee 1037 (1888)
++++.+ .+++ ...+|.++|.++...|++++|+.+|.+|+.. . |.....+...|.+ +...|++++
T Consensus 345 ~~al~~-----~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-----~---~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 345 NRLLAI-----EDID--PTLVYIQYMKFARRAEGIKSGRMIFKKARED-----A---RTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHHHHS-----SSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----T---TCCTHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhCc-----cccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----c---CCchHHHHHHHHHHHHHcCChhH
Confidence 999985 2222 2358999999999999999999999999863 1 2223334445554 446999999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1038 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1038 Ale~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|+.+|+++++.. +++ ..++..++.++...|++++|...|++|+..
T Consensus 410 A~~~~e~al~~~-----p~~---~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 410 AFKIFELGLKKY-----GDI---PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHH-----TTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHC-----CCC---HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999999999875 333 456778899999999999999999999854
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.50 E-value=1.9e-07 Score=93.23 Aligned_cols=90 Identities=20% Similarity=0.200 Sum_probs=76.1
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
.+|++++|+.+|++++.+ +..+|....++.+||.+|+.+|++++|+.++++++.+ +|....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999875 2335778899999999999999999999999999987 455678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Q 000191 985 VFYYRLQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~ 1007 (1888)
.+|..+|++++|+.+|++++.+.
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999863
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.48 E-value=3.4e-07 Score=91.44 Aligned_cols=90 Identities=24% Similarity=0.221 Sum_probs=75.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 947 ~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
.+|++++|+.+|++|+.+ +.++|....++.+||.+|..+|++++|+.+|++++.+ +|....++.++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 68 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYA 68 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHH
Confidence 468999999999999885 3345788899999999999999999999999999986 344567889999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+|..+|++++|+.+|+++++..
T Consensus 69 ~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 69 MVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.46 E-value=3.6e-07 Score=87.62 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 895 QLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.++.+|..++..|++++|+.+|++++.+ .+....++..+|.+|..+|++++|+.++++++.+ .+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~ 71 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------IE 71 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------SC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------Cc
Confidence 3556788899999999999999999987 2344578999999999999999999999999986 23
Q ss_pred h--hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 000191 975 D--TMKSYGDLAVFYYRL-QHTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~--ta~ay~nLA~ly~~l-GdyeeALey~~kALeL 1006 (1888)
. ...++.++|.+|..+ |++++|++++++++..
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 4 578899999999999 9999999999998864
No 184
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.43 E-value=6.3e-07 Score=105.15 Aligned_cols=131 Identities=15% Similarity=-0.013 Sum_probs=108.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
.+..|..+...|+|++|.+.|..++.. .|... +++.+|.+++..+++++|+.++++++.. .++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~d~~ 168 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-------PDKF 168 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-------SCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-------CCcc
Confidence 344578889999999999999877542 45555 8899999999999999999999866442 1333
Q ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 976 -TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 976 -ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~-~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...++++||.++..+|++++|+.+|++++. |+..|. ...+++++|.++..+|+.++|..+|++++..
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 346899999999999999999999999974 333255 6678899999999999999999999999986
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=3.5e-06 Score=108.13 Aligned_cols=167 Identities=13% Similarity=0.141 Sum_probs=137.7
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHh
Q 000191 900 SKTALDKGKL-EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINERE 968 (1888)
Q Consensus 900 G~~~l~qGd~-dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd----------yeeAl~~~eKAL~I~Er~ 968 (1888)
.......|.+ ++|+.++.+++.+ +|....+|+..+.++..+|+ +++|+.++.+++..
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---- 102 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---- 102 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----
Confidence 3445566666 4679999999987 67778899999999999998 99999999999876
Q ss_pred cCCCChhhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKA 1045 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~lG--dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-~yeeAle~LekA 1045 (1888)
+|....+|++.+.++...+ ++++|++++.+++++ +|....+|++.++++..+| .++++++++.++
T Consensus 103 ----~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 103 ----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp ----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred ----CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 6778899999999999999 779999999999986 5666788999999999999 899999999988
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 000191 1046 LKCNQRLLGPDHIQTAASYHAIAIALSLM--------------EAYPLSVQHEQTTLQILRAKLGPDDLRTQ 1103 (1888)
Q Consensus 1046 Lei~ek~~G~d~~~tA~al~nLA~ay~~l--------------GdydeAle~lqkALeI~kk~LG~dh~~tl 1103 (1888)
++. ++....++++.+.++..+ +.+++|++++.+|+.+ .+++....
T Consensus 171 I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~-----~P~~~saW 229 (567)
T 1dce_A 171 ITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAW 229 (567)
T ss_dssp TTT--------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH-----CSSCSHHH
T ss_pred HHH--------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh-----CCCCccHH
Confidence 865 344557888889888875 5568888888888754 56665443
No 186
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.32 E-value=9.2e-05 Score=88.85 Aligned_cols=172 Identities=14% Similarity=0.157 Sum_probs=134.0
Q ss_pred HHHHHcCChH-HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhc
Q 000191 901 KTALDKGKLE-DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD----------FNQATIYQQKALDINEREL 969 (1888)
Q Consensus 901 ~~~l~qGd~d-EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd----------yeeAl~~~eKAL~I~Er~l 969 (1888)
......|.++ +|+.++.++|.+ +|....+++..+.++..++. +++++.++.+++..
T Consensus 37 ~~~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----- 103 (331)
T 3dss_A 37 FQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----- 103 (331)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-----
Confidence 4455678877 688888888865 67777888888888887776 46666666666654
Q ss_pred CCCChhhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Q 000191 970 GLDHPDTMKSYGDLAVFYYRLQH--TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-VHVALRYLHKAL 1046 (1888)
Q Consensus 970 G~Dhp~ta~ay~nLA~ly~~lGd--yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~-yeeAle~LekAL 1046 (1888)
+|....++++.+.++...++ +++++.++.+++++ +|....++++.+.++...|. ++++++++.+++
T Consensus 104 ---~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I 172 (331)
T 3dss_A 104 ---NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI 172 (331)
T ss_dssp ---CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 67788899999999999994 89999999999985 56677889999999999999 699999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000191 1047 KCNQRLLGPDHIQTAASYHAIAIALSLM--------------EAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWL 1109 (1888)
Q Consensus 1047 ei~ek~~G~d~~~tA~al~nLA~ay~~l--------------GdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~L 1109 (1888)
+.. +....++++.+.++..+ +.++++++++.+++.+ .|++........++
T Consensus 173 ~~~--------p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 173 TRN--------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWL 236 (331)
T ss_dssp HHC--------SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHH
T ss_pred HHC--------CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Confidence 763 34456777888888776 4577888888888754 57777665544444
No 187
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.31 E-value=2.7e-05 Score=92.55 Aligned_cols=186 Identities=9% Similarity=0.018 Sum_probs=129.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 975 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ 975 (1888)
++.+|.++...|++++|+.++.+.+.. ++ ......++..++.+|..+|+.+.|...+++...+.+... ...+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~--~~~d 174 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTV--SGDN 174 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHH--HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccc--ccch
Confidence 356789999999999999999998653 11 135678999999999999999999999998866521000 0012
Q ss_pred hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 976 TMKSYGDLAVFYYRLQ--HTELALKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lG--dyeeALey~~kALeL~~ki~G~dhP~--~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
....+.--|++....| ++++|..+|+++.. ..|+ ....+.+ ++..+|++++|...++.+++..-.
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--------~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQ--------TFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--------TSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--------hCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence 3333334455566667 99999999999654 2343 2333444 899999999999999977765422
Q ss_pred hcCCC--cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000191 1052 LLGPD--HIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1052 ~~G~d--~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
.-..+ .+..+.++.+++.+...+|+ +|.+++.++.+ ..|+|+.+++...
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-----~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-----LDHEHAFIKHHQE 294 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH-----TTCCCHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH-----hCCCChHHHHHHH
Confidence 10000 13456778888888888897 78888887764 4699987765544
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.4e-07 Score=88.67 Aligned_cols=96 Identities=11% Similarity=0.194 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
+.++..+|.+++.+|++++|+.+|++|+.+ .|....++.++|.+|..+|++++|+.+|++++.+ .++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~ 70 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-----TST 70 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC
Confidence 568899999999999999999999999987 3556788999999999999999999999999975 233
Q ss_pred C---hhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000191 1015 H---PNTAATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 1015 h---P~~a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
+ .....++.++|.++..+|++++|+..++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 71 AEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 2 1136778899999999888877766554
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.27 E-value=5.2e-06 Score=77.43 Aligned_cols=87 Identities=30% Similarity=0.497 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.+..+.++..+|.+|..+|++++|+.++++++.+ .+....++.++|.+|...|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3456788999999999999999999999999986 3455678999999999999999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCC
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLG 1033 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG 1033 (1888)
+|....++.++|.++..+|
T Consensus 73 ----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 ----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ----CTTCHHHHHHHHHHHHHHC
T ss_pred ----CCCCHHHHHHHHHHHHhcC
Confidence 2444567888999887654
No 190
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.26 E-value=1.6e-06 Score=107.29 Aligned_cols=229 Identities=14% Similarity=0.051 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
...+...+..+...|++++|+.+++.+++... . +.+...|+.+|.++|++.++..+++.
T Consensus 61 ~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~--------~-~~i~~~Li~~Y~Klg~l~e~e~f~~~------------ 119 (449)
T 1b89_A 61 PSSYMEVVQAANTSGNWEELVKYLQMARKKAR--------E-SYVETELIFALAKTNRLAELEEFING------------ 119 (449)
T ss_dssp ---------------------------------------------------------CHHHHTTTTTC------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc--------c-chhHHHHHHHHHHhCCHHHHHHHHcC------------
Confidence 33455556677778999999998888876411 1 23455566666666666666555531
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--H
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN--Q 1050 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~--e 1050 (1888)
|.. .++.++|..|+..|+|++|..+|.++ ..+..+|.+|..+|+|++|++.+++|.... .
T Consensus 120 -pn~-~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk 181 (449)
T 1b89_A 120 -PNN-AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 181 (449)
T ss_dssp -C-----------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CcH-HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHH
Confidence 111 25666666666666666666666644 124456666666666666666666553220 0
Q ss_pred Hh---------------cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 000191 1051 RL---------------LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESK 1115 (1888)
Q Consensus 1051 k~---------------~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qk 1115 (1888)
.. .|..-...+.-+..+..+|...|.+++|+.++++++. +.+.|.....-+..+ +..-+
T Consensus 182 ~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~-----le~ah~~~ftel~il-~~ky~ 255 (449)
T 1b89_A 182 EVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG-----LERAHMGMFTELAIL-YSKFK 255 (449)
T ss_dssp HHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-----STTCCHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC-----CcHHHHHHHHHHHHH-HHhcC
Confidence 00 0000001112233467889999999999999998873 334554333222211 22112
Q ss_pred HHHHHHHHHhcCCCCchhh--hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1116 AFEQQEAARNGTRKPDASI--ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYV 1169 (1888)
Q Consensus 1116 a~e~AeAl~~~~~~~~~~~--as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKA 1169 (1888)
-....+.+.......+... ..- ....++..+.-+|...++|+.|+..+-+.
T Consensus 256 p~k~~ehl~~~~~~ini~k~~~~~---~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 256 PQKMREHLELFWSRVNIPKVLRAA---EQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHH---HTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHH---HHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 2222222222111111110 000 11235677788889999999998766544
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.25 E-value=6.1e-07 Score=86.89 Aligned_cols=97 Identities=16% Similarity=0.133 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.+..++.+|..++..|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.++++++.+. +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-----S 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----S
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C
Confidence 3567888999999999999999999999987 44556789999999999999999999999999862 2
Q ss_pred CC---hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000191 972 DH---PDTMKSYGDLAVFYYRLQHTELALKYVK 1001 (1888)
Q Consensus 972 Dh---p~ta~ay~nLA~ly~~lGdyeeALey~~ 1001 (1888)
++ .....++.++|.++..+|+++.|+..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 70 TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 22 1126788999999999998888776554
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.25 E-value=2.4e-06 Score=92.02 Aligned_cols=86 Identities=16% Similarity=0.152 Sum_probs=75.3
Q ss_pred HcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q 000191 905 DKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF----------NQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 905 ~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy----------eeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
+.++|++|+..+++++++ +|..+.+|.++|.++..++++ ++|+..|++||.+ .|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 346789999999999988 677788999999999999875 4888888888887 57
Q ss_pred hhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQ-----------HTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lG-----------dyeeALey~~kALeL 1006 (1888)
....+|++||.+|..+| ++++|+.+|++|+++
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 78899999999999885 899999999999997
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.21 E-value=4.5e-06 Score=82.52 Aligned_cols=84 Identities=14% Similarity=-0.028 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
++|+.+|++++.. .|....++..+|.+|+.+|++++|+.++++++.+ .|....++.+||.+|..
T Consensus 2 ~~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 2 QAITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CCHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHH
Confidence 3577788888764 4555679999999999999999999999999987 35567889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHH
Q 000191 990 LQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~k 1009 (1888)
+|++++|+.+|++++.+...
T Consensus 66 ~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccc
Confidence 99999999999999987643
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.20 E-value=2.3e-06 Score=92.23 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=75.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhcCCCCh
Q 000191 947 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT----------ELALKYVKRALYLLHLTCGPSHP 1016 (1888)
Q Consensus 947 ~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdy----------eeALey~~kALeL~~ki~G~dhP 1016 (1888)
+.+.|++|+..+++|+.+ +|....+|+++|.++..++++ ++|+.+|++|+.+ .|
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 456789999999999987 577889999999999999876 5999999999987 46
Q ss_pred hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLG-----------NVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG-----------~yeeAle~LekALei~ 1049 (1888)
....+|+++|.+|..+| ++++|+.+|++|+++.
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 67788999999999875 8999999999999984
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.17 E-value=9.7e-06 Score=75.57 Aligned_cols=88 Identities=25% Similarity=0.391 Sum_probs=72.7
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
+.+....++.++|.+|...|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++.
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-- 73 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-- 73 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--
Confidence 34566788999999999999999999999999986 24446778999999999999999999999999873
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcC
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLME 1075 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lG 1075 (1888)
+ ....++.++|.++..+|
T Consensus 74 ---p---~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 ---P---NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ---T---TCHHHHHHHHHHHHHHC
T ss_pred ---C---CCHHHHHHHHHHHHhcC
Confidence 2 33567788898887654
No 196
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.15 E-value=8.3e-05 Score=88.33 Aligned_cols=155 Identities=6% Similarity=0.024 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALDKG--KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVL----YHT---GDFNQATIYQQKALD 963 (1888)
Q Consensus 893 A~~LlelG~~~l~qG--d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly----~~l---GdyeeAl~~~eKAL~ 963 (1888)
....+.++.++...| ++++++.++.++|.. +|....+++..+.++ ..+ +++++++.++.+++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~ 138 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 344556677777888 999999999999986 566667888888888 667 899999999999998
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC------H
Q 000191 964 INERELGLDHPDTMKSYGDLAVFYYRLQHTE--LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN------V 1035 (1888)
Q Consensus 964 I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdye--eALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~------y 1035 (1888)
. +|....++++.+.++...+.++ ++++++.++++. +|....++++.+.++..+++ +
T Consensus 139 ~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--------d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 139 S--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--------DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp H--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred h--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 6 6777899999999999999998 999999999975 56667889999999999987 8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 000191 1036 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 1079 (1888)
Q Consensus 1036 eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyde 1079 (1888)
+++++++++++.+. +....+++.++.++...|+...
T Consensus 203 ~eEl~~~~~aI~~~--------p~n~SaW~y~~~ll~~~~~~~~ 238 (306)
T 3dra_A 203 DEELNYVKDKIVKC--------PQNPSTWNYLLGIHERFDRSIT 238 (306)
T ss_dssp HHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHhC--------CCCccHHHHHHHHHHhcCCChH
Confidence 99999999998762 2233455555666666665433
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=1.3e-05 Score=83.36 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000191 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
+++++|+.+|+++.+. .++. ++ ||.+|...+..++|+.+|++|... ....++++||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-------g~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-------NEMF---GC--LSLVSNSQINKQKLFQYLSKACEL----------NSGNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-------TCTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT----------TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-------CCHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC----------CCHHHHHHHHHH
Confidence 4688999999999765 2333 22 999999999999999999999874 246789999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Q 000191 987 YYR----LQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 987 y~~----lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~----lG~yeeAle~LekALei 1048 (1888)
|.. .+++++|+.+|++|.+. .+ ..++++||.+|.. .+++++|+.+|++|.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL-------ND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC-------CC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 89999999999999863 23 4678899999999 99999999999999875
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.11 E-value=1.2e-05 Score=79.52 Aligned_cols=83 Identities=19% Similarity=0.141 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000191 953 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1032 (1888)
Q Consensus 953 eAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l 1032 (1888)
+|+.+|++++.. .|....++++||.+|...|++++|+.+|++++.+ .|....++.++|.+|..+
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHc
Confidence 467777777764 3556788999999999999999999999999986 345567889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 000191 1033 GNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1033 G~yeeAle~LekALei~ek 1051 (1888)
|++++|+.+|++++++...
T Consensus 67 g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccc
Confidence 9999999999999998644
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.05 E-value=2e-05 Score=81.91 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000191 949 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMM 1028 (1888)
Q Consensus 949 GdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~i 1028 (1888)
+++++|+.+|++|.+. | ++.. + ||.+|...+.+++|+.+|++|.+. .+ ..++++||.+
T Consensus 9 ~d~~~A~~~~~~aa~~-----g--~~~a---~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g~---~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-----N--EMFG---C--LSLVSNSQINKQKLFQYLSKACEL-------NS---GNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT-----T--CTTH---H--HHHHTCTTSCHHHHHHHHHHHHHT-------TC---HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-----C--CHhh---h--HHHHHHcCCCHHHHHHHHHHHHcC-------CC---HHHHHHHHHH
Confidence 4678999999999864 2 3322 2 999999999999999999999873 23 4678999999
Q ss_pred HHH----CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHH
Q 000191 1029 EEG----LGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL----MEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1029 y~~----lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~----lGdydeAle~lqkALe 1089 (1888)
|.. .+++++|+.+|++|.+. ....++++||.+|.. .+++++|+.+|++|.+
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 998 89999999999999864 135678899999999 8999999999999975
No 200
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.00 E-value=2.2e-05 Score=76.52 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=62.3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
+|....++++||.+|..+|++++|+.+|++++.+ .|....++.++|.+|..+|++++|+.+|++++++....
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4566788999999999999999999999999986 24445689999999999999999999999999987543
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.98 E-value=2.3e-05 Score=76.37 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=62.4
Q ss_pred ChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 931 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 931 hpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
+|....+++.||.+|+.+|++++|+.++++++.+ .|....+|.+||.+|..+|++++|+.+|++++.+...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 3556778999999999999999999999999987 3556678999999999999999999999999998654
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.92 E-value=2.6e-05 Score=100.03 Aligned_cols=154 Identities=7% Similarity=0.052 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 000191 894 RQLLESSKTALDKGK----------LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKA 961 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd----------~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lG--dyeeAl~~~eKA 961 (1888)
..++.++.++...|+ +++|+.++.+++.. +|....+|+..+.++..+| ++++|+.++.++
T Consensus 64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~ 135 (567)
T 1dce_A 64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARF 135 (567)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHH
Confidence 345555666666666 89999999999876 6777889999999999999 779999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------
Q 000191 962 LDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL-------- 1032 (1888)
Q Consensus 962 L~I~Er~lG~Dhp~ta~ay~nLA~ly~~lG-dyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l-------- 1032 (1888)
+++ ++....++++.+.++...| .+++|++++.++++. +|....+|++.+.++..+
T Consensus 136 l~~--------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--------~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 136 LEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--------TCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred Hhh--------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--------CCCCccHHHHHHHHHHhhcccccccc
Confidence 997 5677889999999999999 899999999998863 566778899999998875
Q ss_pred ------CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHH
Q 000191 1033 ------GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPL 1079 (1888)
Q Consensus 1033 ------G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdyde 1079 (1888)
+.+++|++++.+|+.+. + ....+++.++.++...+++.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-----P---~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-----P---NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-----S---SCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-----C---CCccHHHHHHHHHhcCCCccc
Confidence 56799999999999873 3 334567778888888887554
No 203
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.84 E-value=0.00055 Score=82.13 Aligned_cols=150 Identities=7% Similarity=0.075 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000191 909 LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD--FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 986 (1888)
Q Consensus 909 ~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd--yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~l 986 (1888)
+++++.++.+++.. +|....+++..+.++..+|+ +++++.++.+++.+ ++....++++.+.+
T Consensus 90 l~~EL~~~~~~L~~--------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~v 153 (331)
T 3dss_A 90 VKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFV 153 (331)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHH
Confidence 56677777777655 67777899999999999994 89999999999986 67778899999999
Q ss_pred HHHcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHH
Q 000191 987 YYRLQH-TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGL--------------GNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 987 y~~lGd-yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~l--------------G~yeeAle~LekALei~ek 1051 (1888)
+...|. ++++++++.+++.. +|....++++.+.++..+ +.++++++++.+++.+.
T Consensus 154 l~~l~~~~~eel~~~~~~I~~--------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-- 223 (331)
T 3dss_A 154 AAQAAVAPAEELAFTDSLITR--------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-- 223 (331)
T ss_dssp HHHTTCCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhCcCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--
Confidence 999999 59999999999975 566778889999998877 45889999999998874
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHc-C----------ChHHHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLM-E----------AYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~l-G----------dydeAle~lqkALeI 1090 (1888)
++ ...+++.+..++... | .++++++++++.+++
T Consensus 224 ---P~---d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 224 ---PN---DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp ---TT---CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CC---CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 32 334444344344333 3 356666666666644
No 204
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.84 E-value=0.0005 Score=81.71 Aligned_cols=155 Identities=9% Similarity=-0.078 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSH 1015 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dh 1015 (1888)
.++..+|.+|...|++++|+.++.+++.. +. ......++..++.+|..+|+.+.|.+.+++.... +
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~ 166 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--------I 166 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 34579999999999999999999988653 11 2467888999999999999999999999988664 2
Q ss_pred h------hHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1016 P------NTAATYINVAMMEEGLG--NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1016 P------~~a~a~~NLA~iy~~lG--~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
| +...++..-|++....| ++++|..+|+++.+.+ ++ ......+++ ++..+|++++|...++..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-----p~-~~~~~lLln---~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-----PT-WKTQLGLLN---LHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-----CS-HHHHHHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-----CC-cccHHHHHH---HHHHcCCHHHHHHHHHHH
Confidence 3 23333333455566666 9999999999965432 11 112233333 899999999999999866
Q ss_pred HHHHHH-----hcCCCCHHHHHHHHHHHHHH
Q 000191 1088 LQILRA-----KLGPDDLRTQDAAAWLEYFE 1113 (1888)
Q Consensus 1088 LeI~kk-----~LG~dh~~tl~a~~~La~L~ 1113 (1888)
++.+-. ...++++.++.....+.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l 268 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQ 268 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHh
Confidence 655322 11366776665544444443
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.82 E-value=0.0002 Score=86.77 Aligned_cols=143 Identities=13% Similarity=-0.057 Sum_probs=105.6
Q ss_pred ccHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH----HHHHHHHHH
Q 000191 888 CSSADGRQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF----NQATIYQQK 960 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd---~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy----eeAl~~~eK 960 (1888)
+....|..++-.|..++..+. +.+|+.+|++|+++ +|..+.++..++.+|.....+ ......+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 344467788888888887765 57899999999988 688788888888877632111 122233334
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000191 961 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1040 (1888)
Q Consensus 961 AL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle 1040 (1888)
++..... -...+....+|.-+|..+...|++++|+.++++|+.+- +. ...|..+|.++...|++++|++
T Consensus 263 a~~a~~a--~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--------~s-~~a~~llG~~~~~~G~~~eA~e 331 (372)
T 3ly7_A 263 EIDNIVT--LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--------MS-WLNYVLLGKVYEMKGMNREAAD 331 (372)
T ss_dssp HHHHHHT--CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------CC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 4442211 12235667788889999999999999999999999972 23 4567789999999999999999
Q ss_pred HHHHHHHHH
Q 000191 1041 YLHKALKCN 1049 (1888)
Q Consensus 1041 ~LekALei~ 1049 (1888)
.|++|+.+.
T Consensus 332 ~~~~AlrL~ 340 (372)
T 3ly7_A 332 AYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 999999883
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.77 E-value=4.7e-05 Score=72.77 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAG-AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 974 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~-ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp 974 (1888)
.+..|..++..|++++|+.+|++++.. +|.... ++.++|.+|..+|++++|+.+|++++.+ . |
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~---p 66 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----N---P 66 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----C---T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----C---C
Confidence 356788889999999999999999886 445556 8999999999999999999999999987 2 3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....++.+ +.+.+|+.+|++++.+
T Consensus 67 ~~~~~~~~--------~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 67 DSPALQAR--------KMVMDILNFYNKDMYN 90 (99)
T ss_dssp TSTHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred CcHHHHHH--------HHHHHHHHHHHHHhcc
Confidence 33333322 5567777777777655
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.72 E-value=5.9e-05 Score=72.11 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000191 939 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK-SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPN 1017 (1888)
Q Consensus 939 ~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~-ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~ 1017 (1888)
..+|.++...|++++|+.++++++.+ +|.... ++.++|.+|..+|++++|+.+|++++.+ .++++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~ 70 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL-----NPDSPA 70 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHH
Confidence 56789999999999999999999986 355566 8999999999999999999999999986 333332
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
++.+ +.+.+|+.+|++++...
T Consensus 71 ---~~~~--------~~~~~a~~~~~~~~~~~ 91 (99)
T 2kc7_A 71 ---LQAR--------KMVMDILNFYNKDMYNQ 91 (99)
T ss_dssp ---HHHH--------HHHHHHHHHHCCTTHHH
T ss_pred ---HHHH--------HHHHHHHHHHHHHhccC
Confidence 2222 45566777777666554
No 208
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.65 E-value=0.0025 Score=83.52 Aligned_cols=245 Identities=8% Similarity=-0.070 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 911 DAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQAT-IYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 911 EAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl-~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
.....|++||.. .|....+|...|..+...|+.++|. ..|++|+..+ |.....+..++.++..
T Consensus 327 Rv~~~Ye~aL~~--------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--------P~s~~Lwl~~a~~ee~ 390 (679)
T 4e6h_A 327 RMTYVYMQAAQH--------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--------PNSAVLAFSLSEQYEL 390 (679)
T ss_dssp HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Confidence 345678888876 3445678899999999999999997 9999998752 4455667889999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhc------CCC--------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 990 LQHTELALKYVKRALYLLHLTC------GPS--------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGP 1055 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~~ki~------G~d--------hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~ 1055 (1888)
.|++++|...|++++......+ .+. +.....++...+.+..+.|..+.|...|.+|++... .
T Consensus 391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~----~ 466 (679)
T 4e6h_A 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK----L 466 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG----G
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC----C
Confidence 9999999999999998642111 011 012445677778888888999999999999987521 1
Q ss_pred CcHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Q 000191 1056 DHIQTAASYHAIAIALSLME-AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASI 1134 (1888)
Q Consensus 1056 d~~~tA~al~nLA~ay~~lG-dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~L~qka~e~AeAl~~~~~~~~~~~ 1134 (1888)
. ...++...|.+....+ +++.|...|+.+++.+ ++++.....+..+ ....+..+.+.++.+.+.....
T Consensus 467 ~---~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~-----p~~~~~w~~y~~f-e~~~~~~~~AR~lferal~~~~-- 535 (679)
T 4e6h_A 467 V---TPDIYLENAYIEYHISKDTKTACKVLELGLKYF-----ATDGEYINKYLDF-LIYVNEESQVKSLFESSIDKIS-- 535 (679)
T ss_dssp S---CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TTCHHHHHHHHHH-HHHHTCHHHHHHHHHHHTTTSS--
T ss_pred C---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCchHHHHHHHHH-HHhCCCHHHHHHHHHHHHHhcC--
Confidence 1 1233445566665554 5899999999999865 3444433222211 1123445556665554332211
Q ss_pred hhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhccccCCCCCCCCCCcchhhhhccc
Q 000191 1135 ASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFYQDNNLTSPDGSSKEVLRESS 1197 (1888)
Q Consensus 1135 as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~q~~~~a~~eIa~LEikyet~ 1197 (1888)
+......++..........|+.+.+...++++++....- ..+..+-.+|...
T Consensus 536 ---~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~--------~~~~~f~~ry~~~ 587 (679)
T 4e6h_A 536 ---DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV--------NKLEEFTNKYKVL 587 (679)
T ss_dssp ---STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC--------CHHHHHHHHTCBT
T ss_pred ---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------cHHHHHHHHhcCC
Confidence 012345677788888888999999999999999887642 3555555555544
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.53 E-value=0.00066 Score=67.12 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
+..++.+|..++.+|+|..|+.+|++|+.....-. ........++..||.+|+.+|+++.|+.++++|+.+ .
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~-~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~-- 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----D-- 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----C--
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC-CCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----C--
Confidence 56788999999999999999999999998864321 012345688999999999999999999999999987 3
Q ss_pred ChhhHHHHHHHH
Q 000191 973 HPDTMKSYGDLA 984 (1888)
Q Consensus 973 hp~ta~ay~nLA 984 (1888)
|....+..|++
T Consensus 77 -P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 -PEHQRANGNLK 87 (104)
T ss_dssp -TTCHHHHHHHH
T ss_pred -CCCHHHHhhHH
Confidence 44445566666
No 210
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.43 E-value=0.014 Score=71.45 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLD 972 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~-lGdyeeAl~~~eKAL~I~Er~lG~D 972 (1888)
..++++|..|..+|++++-.+++......+..+ ....++.....|-..+.. -+..+.-+..+.++++.+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSI---SKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---- 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGS---CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence 568889999999999999888887766554433 123345555555544443 355666777888888887641
Q ss_pred ChhhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 973 HPDTMK--SYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 973 hp~ta~--ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
...... .-..||.+|+..|+|.+|++.+.+.+.-+... .+......++.....+|..++++.++..+|.+|..+..
T Consensus 93 ~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 222333 34589999999999999999999999877653 23456788898999999999999999999999998876
Q ss_pred HhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~-~lGdydeAle~lqkALeI~k 1092 (1888)
..+ .+....+.+...-|.++. ..++|..|..+|-+|+.-|.
T Consensus 171 ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 171 AIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred cCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 543 222245566666788888 79999999999998876554
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.40 E-value=0.0016 Score=64.34 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCC
Q 000191 1019 AATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPD 1098 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~d 1098 (1888)
+.-++.||..+...++|..|+.||++|++....-.. .......++.+||.+|..+|+++.|+.++++++.+ .|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-----~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Confidence 445678999999999999999999999998743211 12346688899999999999999999999999854 688
Q ss_pred CHHHHHHHHHHHH
Q 000191 1099 DLRTQDAAAWLEY 1111 (1888)
Q Consensus 1099 h~~tl~a~~~La~ 1111 (1888)
+........++..
T Consensus 79 ~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 79 HQRANGNLKYFEY 91 (104)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHhhHHHHHH
Confidence 8776555544433
No 212
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.37 E-value=0.0013 Score=79.37 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHhcC
Q 000191 894 RQLLESSKTALDKG-KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHT-G-DFNQATIYQQKALDINERELG 970 (1888)
Q Consensus 894 ~~LlelG~~~l~qG-d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~l-G-dyeeAl~~~eKAL~I~Er~lG 970 (1888)
...+.++.++...| .+++++.++.++|.. +|....+++..+.++..+ + ++++++.++.+++..
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~------ 154 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP------ 154 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh------
Confidence 34555666777778 599999999999865 677778999999999998 8 888888888888754
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC-------H
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN-------V 1035 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdye--------eALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~-------y 1035 (1888)
++....++.+.+.++...+.++ ++++++.++++. +|....++++.+.++..+++ +
T Consensus 155 --dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 155 --DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred --CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHH
Confidence 5777889999999999988888 999999999875 56677889999999999987 7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCCh
Q 000191 1036 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAY 1077 (1888)
Q Consensus 1036 eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdy 1077 (1888)
+++++++++++.+. +....+++.+..++...|+-
T Consensus 225 ~eELe~~~~aI~~~--------P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 225 QDELIYILKSIHLI--------PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCC
Confidence 88999999888763 34456677777788777764
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.22 E-value=0.0036 Score=75.93 Aligned_cols=121 Identities=11% Similarity=0.069 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000191 951 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT----ELALKYVKRALYLLHLTCGPSHPNTAATYINVA 1026 (1888)
Q Consensus 951 yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdy----eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA 1026 (1888)
+.+|+.+|++|+++ +|+.+.+|..++.+|.....+ .....-+.+++..... -...|..+.++.-+|
T Consensus 215 ~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a--~~~~~~~a~~~~ala 284 (372)
T 3ly7_A 215 LNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--LPELNNLSIIYQIKA 284 (372)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--CGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh--cccCCcCHHHHHHHH
Confidence 47899999999987 688888888888877632211 2222333344442211 122344566777788
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1027 MMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1027 ~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.++...|++++|+.++++|+.+. + + +..+..+|.++...|++++|+++|.+|+.+
T Consensus 285 l~~l~~gd~d~A~~~l~rAl~Ln-----~-s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 285 VSALVKGKTDESYQAINTGIDLE-----M-S---WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcC-----C-C---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888899999999999999983 2 2 456678899999999999999999999965
No 214
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.21 E-value=0.008 Score=78.72 Aligned_cols=174 Identities=13% Similarity=0.015 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHcCChHHHH-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--
Q 000191 894 RQLLESSKTALDKGKLEDAV-TYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG-- 970 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAi-e~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG-- 970 (1888)
...+..|..+...|+.++|. ..|++|+.. .|.....+..++.++...|+++.|...|++++........
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--------~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC--------IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555567777889999997 999999865 2334456788899999999999999999999986421100
Q ss_pred -CCCh-----------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHH
Q 000191 971 -LDHP-----------DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHV 1037 (1888)
Q Consensus 971 -~Dhp-----------~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-~yee 1037 (1888)
.+.| ....++...+.+..+.|+.+.|...|.+|+... +.. ...+|...|.+....+ +++.
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----~~~---~~~lyi~~A~lE~~~~~d~e~ 488 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----KLV---TPDIYLENAYIEYHISKDTKT 488 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----GGS---CTHHHHHHHHHHHTTTSCCHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCC---ChHHHHHHHHHHHHhCCCHHH
Confidence 0001 234567888888889999999999999998741 111 1234555677766665 4999
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1038 ALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1038 Ale~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
|..+|+.+++.+ ++.+.. +...+......|+.+.|...|++|+..
T Consensus 489 Ar~ife~~Lk~~-----p~~~~~---w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 489 ACKVLELGLKYF-----ATDGEY---INKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHHHH-----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHC-----CCchHH---HHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999976 333333 344567777889999999999988754
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.95 E-value=0.01 Score=69.59 Aligned_cols=106 Identities=18% Similarity=0.107 Sum_probs=77.9
Q ss_pred CCChhHHHHHHHHHHHHHh---c--CC------HHHHHHHHHHHHHHHHHhcCCCChh--hHHHHHHHHHHHHHc-----
Q 000191 929 PYHRMTAGAYSLLAVVLYH---T--GD------FNQATIYQQKALDINERELGLDHPD--TMKSYGDLAVFYYRL----- 990 (1888)
Q Consensus 929 ~dhpe~A~ay~~LA~ly~~---l--Gd------yeeAl~~~eKAL~I~Er~lG~Dhp~--ta~ay~nLA~ly~~l----- 990 (1888)
..++..+..++++|.++.. . |+ ...|...+++|+++ +|. ...+|..||.+|...
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~g 217 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFG 217 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTT
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccC
Confidence 3456666777777766533 1 32 35566666666666 344 456999999999995
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 000191 991 QHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 991 GdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~ 1049 (1888)
|+.++|.++|++|+++. +++ .+.+++..|..|.. +|++++|.+++++|+..-
T Consensus 218 Gd~ekA~~~ferAL~Ln-----P~~--~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYC-----SAH--DPDHHITYADALCIPLNNRAGFDEALDRALAID 270 (301)
T ss_dssp CCHHHHHHHHHHHHHHC-----CTT--CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhC-----CCC--CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Confidence 99999999999999972 222 14566678998887 599999999999999864
No 216
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.93 E-value=0.011 Score=63.99 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL- 971 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhp-e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~- 971 (1888)
..+++..+.+++.|.|+.|+-+...++.+.+.--....+ ..+.++..+|.+++..++|..|..+|++||.+.+.+...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356777788889999999999999999886542111123 347789999999999999999999999999987643211
Q ss_pred ----------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000191 972 ----------------DHPDTMKSYGDLAVFYYRLQHTELALKYVKR 1002 (1888)
Q Consensus 972 ----------------Dhp~ta~ay~nLA~ly~~lGdyeeALey~~k 1002 (1888)
+-+......+.+|.||..++++++|+..++.
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1112235778899999999999999987654
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.72 E-value=0.0088 Score=58.44 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000191 932 RMTAGAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLH 1008 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGd---yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ 1008 (1888)
|..+..+..+|.+++..++ .++|..++++|+.+ +|....++..||..++..|+|++|+.++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~-- 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS-- 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Confidence 4446688899999987776 79999999999997 6788899999999999999999999999999874
Q ss_pred HhcCCCChhHHHHHHHHHH
Q 000191 1009 LTCGPSHPNTAATYINVAM 1027 (1888)
Q Consensus 1009 ki~G~dhP~~a~a~~NLA~ 1027 (1888)
.+..|....+...+..
T Consensus 73 ---~p~~~~~~~i~~~I~~ 88 (93)
T 3bee_A 73 ---NDPNLDRVTIIESINK 88 (93)
T ss_dssp ---CCTTCCHHHHHHHHHH
T ss_pred ---CCCCccHHHHHHHHHH
Confidence 2334554444444443
No 218
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.64 E-value=0.018 Score=62.30 Aligned_cols=126 Identities=13% Similarity=0.007 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS- 1014 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp-~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d- 1014 (1888)
++..-...++..|.|+.|+.+...++.+.+.....-.+ ....++..+|..++..++|..|+.+|++||.+.+.+....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45555667788899999999999999987652211122 3457889999999999999999999999999887532111
Q ss_pred ----------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 000191 1015 ----------------HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIAL 1071 (1888)
Q Consensus 1015 ----------------hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay 1071 (1888)
-+.-..+.+.+|.||..++++++|+..++.. +....+..+...||.+|
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I---------p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI---------PSRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS---------CGGGCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC---------CchhcCHHHHHHHHHHh
Confidence 1122467889999999999999999987632 11222444555566665
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.61 E-value=0.018 Score=72.85 Aligned_cols=160 Identities=13% Similarity=0.049 Sum_probs=114.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHHhcCC
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGD---------FNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGd---------yeeAl~~~eKAL~I~Er~lG~ 971 (1888)
..|...|++++|+.+|.+.... | ..|. ..+|+.|-.++...+. .++|..+|++.... |.
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~-----G-v~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~-----G~ 101 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRN-----G-VQLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD-----KV 101 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHH-----T-CCCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-----TC
T ss_pred HHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-----CC
Confidence 5667899999999999998764 2 2333 3456666666655443 56677776654331 22
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
.| ...+|+.|-..|...|++++|+++|++.... |- .|+ ..+|+.+-..|...|++++|.++|++..+.
T Consensus 102 -~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~-~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--- 169 (501)
T 4g26_A 102 -VP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GI-QPR-LRSYGPALFGFCRKGDADKAYEVDAHMVES--- 169 (501)
T ss_dssp -CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TC-CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 23 3467889999999999999999999886542 22 243 456888888899999999999999876542
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1052 LLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1052 ~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
|-. | ...+|..|-.+|...|+.++|.+++++-.
T Consensus 170 --G~~-P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 170 --EVV-P-EEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp --TCC-C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --CCC-C-CHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 211 1 33567788899999999999999987654
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.38 E-value=0.052 Score=63.77 Aligned_cols=125 Identities=14% Similarity=0.080 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHhc-----------------------CCCChhhHHHHHHHHHHHHH---c--CC------HHHH
Q 000191 951 FNQATIYQQKALDINEREL-----------------------GLDHPDTMKSYGDLAVFYYR---L--QH------TELA 996 (1888)
Q Consensus 951 yeeAl~~~eKAL~I~Er~l-----------------------G~Dhp~ta~ay~nLA~ly~~---l--Gd------yeeA 996 (1888)
+..|..+|.++.....+.+ ..-++..+..++.+|..... . |. ...|
T Consensus 103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A 182 (301)
T 3u64_A 103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA 182 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence 5566777777666544432 11234445556666655533 1 22 3677
Q ss_pred HHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 000191 997 LKYVKRALYLLHLTCGPSHPN--TAATYINVAMMEEGL-----GNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAI 1069 (1888)
Q Consensus 997 Ley~~kALeL~~ki~G~dhP~--~a~a~~NLA~iy~~l-----G~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ 1069 (1888)
...+++|+++ +|. ...+|..+|.+|... |+.++|..+|++||++. ++. ....++.+|.
T Consensus 183 ~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-----P~~--~id~~v~YA~ 247 (301)
T 3u64_A 183 VMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-----SAH--DPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-----CTT--CSHHHHHHHH
T ss_pred HHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-----CCC--CchHHHHHHH
Confidence 7788888876 344 456889999999996 99999999999999985 322 1445666799
Q ss_pred HHHH-cCChHHHHHHHHHHHHH
Q 000191 1070 ALSL-MEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1070 ay~~-lGdydeAle~lqkALeI 1090 (1888)
.|+. +|++++|..++++|+++
T Consensus 248 ~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 248 ALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHHHHHHcC
Confidence 8887 59999999999999864
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.32 E-value=0.013 Score=57.20 Aligned_cols=84 Identities=19% Similarity=0.095 Sum_probs=64.6
Q ss_pred hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 974 PDTMKSYGDLAVFYYRLQH---TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 974 p~ta~ay~nLA~ly~~lGd---yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
|.....+..+|.+++..++ .++|..++++|+.+ +|....++..+|.++...|+|++|+.+++++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~- 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN- 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 4456778888888877666 79999999999986 46667788889999999999999999999998753
Q ss_pred HhcCCCcHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIA 1070 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~a 1070 (1888)
+..+....+...++.+
T Consensus 74 ----p~~~~~~~i~~~I~~A 89 (93)
T 3bee_A 74 ----DPNLDRVTIIESINKA 89 (93)
T ss_dssp ----CTTCCHHHHHHHHHHH
T ss_pred ----CCCccHHHHHHHHHHH
Confidence 3344444444444443
No 222
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.30 E-value=0.18 Score=61.84 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=114.4
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCChhHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000191 907 GKLEDAVTYGTKALAKLVAVCGPYHRMTAG--AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 984 (1888)
Q Consensus 907 Gd~dEAie~~eeAL~l~eqi~G~dhpe~A~--ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA 984 (1888)
+..+.-++++.++++.+..- ...... .-..||.+|+..|+|.+|+..+.+.+.-+.+. .|.......|..-.
T Consensus 73 ~~~~~~~~~~~~~~~~a~~~----~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~ 146 (394)
T 3txn_A 73 AGTGIEVQLCKDCIEWAKQE----KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLES 146 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHH
Confidence 44566677777777765532 233333 33489999999999999999999998887652 34556778899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 000191 985 VFYYRLQHTELALKYVKRALYLLHLTCGPSHPN-TAATYINVAMMEE-GLGNVHVALRYLHKALKCNQRLLGPDHIQTAA 1062 (1888)
Q Consensus 985 ~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~-~a~a~~NLA~iy~-~lG~yeeAle~LekALei~ek~~G~d~~~tA~ 1062 (1888)
.+|+.++++.++..+|.+|..+...++ .||. .+.+...-|.++. ..++|..|..+|-+|++-+... ..+....
T Consensus 147 ~~~~~~~n~~k~k~~l~~a~~~~~ai~--~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~ 221 (394)
T 3txn_A 147 KTYHALSNLPKARAALTSARTTANAIY--CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALT 221 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhhccCC--CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHH
Confidence 999999999999999999999877653 4565 4555666678888 8999999999999997665322 2333333
Q ss_pred HHHHHHHHHHHcCC
Q 000191 1063 SYHAIAIALSLMEA 1076 (1888)
Q Consensus 1063 al~nLA~ay~~lGd 1076 (1888)
++..++.+-...++
T Consensus 222 ~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 222 SLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 33334444444454
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.22 E-value=0.053 Score=58.03 Aligned_cols=67 Identities=25% Similarity=0.227 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 933 MTAGAYSLLAVVLYHTG---DFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lG---dyeeAl~~~eKAL~I~Er~lG~Dhp-~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....+.+++|+++.+.. +.++++.++++.+.. +.| ....++++||..|+++|+|++|++|++++|++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34578999999999988 666888888887764 234 55789999999999999999999999999986
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.15 E-value=0.055 Score=57.86 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLG---NVHVALRYLHKALKCNQRLLGPDHI-QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG---~yeeAle~LekALei~ek~~G~d~~-~tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
....+.+++|+++.... +.++++.+|++.++.. .+ ....++++||..|+++|+|++|..++++++++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Confidence 34678899999999988 6679999999888752 23 56789999999999999999999999999976
Q ss_pred HhcCCCCHHHHHHHH
Q 000191 1093 AKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1093 k~LG~dh~~tl~a~~ 1107 (1888)
.|++........
T Consensus 101 ---eP~n~QA~~Lk~ 112 (152)
T 1pc2_A 101 ---EPQNNQAKELER 112 (152)
T ss_dssp ---CTTCHHHHHHHH
T ss_pred ---CCCCHHHHHHHH
Confidence 577766544433
No 225
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=1 Score=55.97 Aligned_cols=115 Identities=14% Similarity=-0.034 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 976 TMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d-hP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
.+.....||.+|...|++.+|...+..... ..+|.. .......+.....+|...++|..|..++.++........
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~- 211 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP- 211 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-
Confidence 445667899999999999999999888653 334443 234577788889999999999999999999865443331
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
......+..+...|.++...++|.+|..+|.+++..+...
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 2223456777888999999999999999999998776543
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.84 E-value=0.71 Score=58.26 Aligned_cols=130 Identities=14% Similarity=0.080 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---------TELALKYVKRALYLL 1007 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGd---------yeeALey~~kALeL~ 1007 (1888)
.++.+-..|.+.|++++|+.+|++.... |. .|+ ..+|+.|=.+|...+. +++|.++|.+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----Gv-~pd-~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-- 98 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----GV-QLS-QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-- 98 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TC-CCC-HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH--
Confidence 3555557788999999999999987653 32 232 3456555555554443 5677777766543
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
.| -.|+ ..+|+.+-..|...|++++|+.+|++..+. |-. + ...+|..|-..|...|+.++|.+.+++.
T Consensus 99 ---~G-~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~-P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 99 ---DK-VVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQ-P-RLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp ---TT-CCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCC-C-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---hC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C-ccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 12 2344 357888899999999999999999876542 211 1 2456777788999999999888877643
No 227
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.55 E-value=0.85 Score=56.41 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
++..++..||..|+..|++++|...|.++...+ .+. ...+..+..+..++...+++..|..++.+|..+... +
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~--~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--~ 201 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---IST--GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--G 201 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TCC--CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCh--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--C
Confidence 455688999999999999999999999987654 233 346778888889999999999999999999877543 3
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.+...........|.++...++|.+|..+|.+++..
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 333334455566788888999999999999887654
No 228
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.40 E-value=1.2 Score=55.13 Aligned_cols=109 Identities=10% Similarity=0.078 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
....++..||.+|...|++++|+++|.++...+ .+.. ..+..+..+..++...++|..+..++.+|..+... +
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~~--~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--~ 201 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---ISTG--AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--G 201 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TCCC--SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CChH--HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--C
Confidence 445678899999999999999999999988754 2333 45777888888999999999999999999877644 2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
.+...........|.++...++|..|..+|.+++..
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 333334455556678888899999999999877644
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.01 E-value=1.9 Score=44.75 Aligned_cols=87 Identities=25% Similarity=0.132 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHH
Q 000191 908 KLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP-DTMKSYGDLAVF 986 (1888)
Q Consensus 908 d~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp-~ta~ay~nLA~l 986 (1888)
.+..+...|.+++.. |. ....+.+++|+++.+..+... .++++.+.+.++..++| ..-.+++.||..
T Consensus 16 ~l~~~~~~y~~e~~~-----~~---~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-----GS---VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHH-----SC---CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-----CC---CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 344555566665543 22 345688999999999877654 45666666666665545 566889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHH
Q 000191 987 YYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL 1006 (1888)
++++|+|++|+.|+...|++
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999986
No 230
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.98 E-value=20 Score=43.02 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000191 895 QLLESSKTALDKGKL---EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 971 (1888)
Q Consensus 895 ~LlelG~~~l~qGd~---dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~ 971 (1888)
.....-+..+..|+| =||.+.|+.....+.+. ..+.+....++.=|..+...|++..|.++..-.++++++..-.
T Consensus 14 ~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~--k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~ 91 (336)
T 3lpz_A 14 RIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQ--GNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQR 91 (336)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCC
Confidence 333444667889999 78888888776665442 4556667778888899999999999999888888888774211
Q ss_pred CChhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHH----
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTE-LALKYVKRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLH---- 1043 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdye-eALey~~kALeL~~ki~G~---dhP~~a~a~~NLA~iy~~lG~yeeAle~Le---- 1043 (1888)
-.......|..++.....-+ .=..+..+|+.-..+ .|. .||. .+..+|.+|...+++.+|..+|-
T Consensus 92 ---~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~---LH~~ig~~~~~e~~~~~Ae~H~ilg~~ 164 (336)
T 3lpz_A 92 ---VDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPE---LHHVVGTLYVEEGEFEAAEKHLVLGTK 164 (336)
T ss_dssp ---CCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHH---HHHHHHHHHHHTTCHHHHHHHHTTSCT
T ss_pred ---CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHhcCC
Confidence 11245556666666554322 224566777765554 342 3554 45668999999999999998872
Q ss_pred ---HHH-HHHHHhcCCCcHHHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1044 ---KAL-KCNQRLLGPDHIQTAASYHAI-AIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1044 ---kAL-ei~ek~~G~d~~~tA~al~nL-A~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
+.+ ++..+......+.....+... -.-|...++...|...+..-.+.+
T Consensus 165 ~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 165 ESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp THHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 111 221111111122333333333 345678899999988776555444
No 231
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.93 E-value=5.6 Score=49.92 Aligned_cols=212 Identities=9% Similarity=-0.048 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000191 910 EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 989 (1888)
Q Consensus 910 dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~ 989 (1888)
......|++++... |.....|...+..+...|+.+.|...|++|+.. +.+... +...+.+
T Consensus 196 ~Rv~~~ye~al~~~--------p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~l---~~~y~~~--- 255 (493)
T 2uy1_A 196 SRMHFIHNYILDSF--------YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMFL---SLYYGLV--- 255 (493)
T ss_dssp HHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHH---HHHHHHH---
T ss_pred HHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHHH---HHHHHhh---
Confidence 34566788877652 233568888899999999999999999999986 222222 1212221
Q ss_pred cCCHHHHHHHHHHHHHHH---HHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 000191 990 LQHTELALKYVKRALYLL---HLTCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASY 1064 (1888)
Q Consensus 990 lGdyeeALey~~kALeL~---~ki~G--~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al 1064 (1888)
.+.++. +.+....+ ....+ ..+.....++...+..+.+.+..+.|...|++| .. +.. ....+
T Consensus 256 -~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~~--~~~v~ 322 (493)
T 2uy1_A 256 -MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EGV--GPHVF 322 (493)
T ss_dssp -TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SCC--CHHHH
T ss_pred -cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CCC--ChHHH
Confidence 111111 22222111 00000 012333456777777777788899999999988 21 111 23345
Q ss_pred HHHHHHHHHcC-ChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCchhhhhcCCccH
Q 000191 1065 HAIAIALSLME-AYPLSVQHEQTTLQILRAKLGPDDLRTQDAAAWLEY-FESKAFEQQEAARNGTRKPDASIASKGHLSV 1142 (1888)
Q Consensus 1065 ~nLA~ay~~lG-dydeAle~lqkALeI~kk~LG~dh~~tl~a~~~La~-L~qka~e~AeAl~~~~~~~~~~~as~~~~sv 1142 (1888)
...|.+....+ +.+.|...++.+++.+ ++.+..... ++.. ...+..+.+.++...... +
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-----~~~~~~~~~--yid~e~~~~~~~~aR~l~er~~k-----------~- 383 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-----PDSTLLKEE--FFLFLLRIGDEENARALFKRLEK-----------T- 383 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-----TTCHHHHHH--HHHHHHHHTCHHHHHHHHHHSCC-----------B-
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-----CCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHH-----------H-
Confidence 45566655555 6999999999998743 344432111 1111 122333444444443310 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q 000191 1143 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVK 1173 (1888)
Q Consensus 1143 aelL~~Lg~~y~~qGdyeEAleyyeKALeL~ 1173 (1888)
..++..........|+.+.+...+++++...
T Consensus 384 ~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 2455555556677799999999999998744
No 232
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=92.91 E-value=0.15 Score=50.09 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=58.0
Q ss_pred cCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 22 LPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
.|..++|.||++.+..+....-++|+|.||++.|.+...++. ..--|.+ .|..|+|...+.+.+ |++|.|.
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~-~qQrLif--~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP-NKIVLQK--GGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG-GGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH-HHEEEEe--CCEEccCcCCHHHcCCCCCCEEEEE
Confidence 467999999999888888777788999999999999988776 4445764 999999988888754 7888874
No 233
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.12 E-value=3.1 Score=52.27 Aligned_cols=164 Identities=10% Similarity=-0.027 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC--C
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG--L 971 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG--~ 971 (1888)
...+..+..+...|+.++|...|++|+.. +.... .+...+.. ...+ +....+.++..+.+...+ .
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~------P~~~~---l~~~y~~~-~e~~---~~~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM------SDGMF---LSLYYGLV-MDEE---AVYGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSH---HHHHHHHH-TTCT---HHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCcHH---HHHHHHhh-cchh---HHHHHHHHHHHhhccchhhhh
Confidence 33455567778899999999999999976 12222 12111211 0111 111111111111110000 0
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Q 000191 972 DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-NVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 972 Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG-~yeeAle~LekALei~e 1050 (1888)
.+......+...+.++.+.++.+.|...|.+| .. +. ....++...|.+....+ +.+.|...|+.+++.+
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~- 350 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH- 350 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 12233466777888888888999999999998 21 11 12345555566666555 5999999999999853
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
++.+.. +...+......|+.+.|...|+++
T Consensus 351 ----~~~~~~---~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 351 ----PDSTLL---KEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp ----TTCHHH---HHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred ----CCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333433 333466677889999998888775
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.91 E-value=1.6 Score=54.24 Aligned_cols=113 Identities=10% Similarity=0.006 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 934 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH-PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 934 ~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dh-p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
.+.+...||.+|...|++.+|...+..... .+.|.++ ......+.....+|...+++.+|..++.++.......
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~---Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~-- 210 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQV---ETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN-- 210 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc--
Confidence 567778899999999999999998887653 2344433 3456778888999999999999999999986544332
Q ss_pred CCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000191 1013 PSHPN-TAATYINVAMMEEGLGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 1013 ~dhP~-~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek 1051 (1888)
..+|. .+..+...|.++...++|.+|-.+|.+++.....
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 33454 4667788899999999999999999999887644
No 235
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.38 E-value=28 Score=41.28 Aligned_cols=185 Identities=11% Similarity=-0.037 Sum_probs=119.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000191 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 977 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta 977 (1888)
..-+..+..|+|=||.+.|+-....+.+. ..+.+....++.-|..+...|++..|.++..-.++.+++.. .+-..
T Consensus 18 ~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~--~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~---~~~~~ 92 (312)
T 2wpv_A 18 QRFENKIKAGDYYEAHQTLRTIANRYVRS--KSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAE---VKVDD 92 (312)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT---CCCSH
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCH
Confidence 33466678899999999998887766543 34556677788888899999999999999888888887742 12223
Q ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHHH
Q 000191 978 KSYGDLAVFYYRLQHTE-LALKYVKRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHKA----LKCN 1049 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdye-eALey~~kALeL~~ki~G~---dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA----Lei~ 1049 (1888)
.....|..++.....-+ .=.++..+|+....+. |. .|| ..+..+|..|...+++.+|..+|-.+ .+.+
T Consensus 93 ~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp---~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~ 168 (312)
T 2wpv_A 93 ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDP---YLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKY 168 (312)
T ss_dssp HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCH---HHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHH
Confidence 44556666665543222 2246777777765554 33 355 45667899999999999999988311 1111
Q ss_pred ----HHhcCC---CcHHHHHHHHHHH-HHHHHcCChHHHHHHHHHHHHHH
Q 000191 1050 ----QRLLGP---DHIQTAASYHAIA-IALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1050 ----ek~~G~---d~~~tA~al~nLA-~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.+.... ..+.....+...| .-|..+|+...|...+..-.+.+
T Consensus 169 a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 169 VDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 111111 2333444443333 34667899999988876555443
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.22 E-value=1.9 Score=52.62 Aligned_cols=114 Identities=17% Similarity=-0.002 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC---CC-----------hhHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000191 893 GRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP---YH-----------RMTAGAYSLLAVVLYHTGDFNQATIYQ 958 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~---dh-----------pe~A~ay~~LA~ly~~lGdyeeAl~~~ 958 (1888)
...+...|......|+.+.|...+.+|+.++.--+-. .. .....++..++.++...|++.+|+..+
T Consensus 115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l 194 (388)
T 2ff4_A 115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 194 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555666666777899999999999999875311100 11 112345566788889999999999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 959 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 959 eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
++++.. +|..-..|..|-.+|+..|+..+|++.|+++...+..-+|-+
T Consensus 195 ~~~~~~--------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 195 EALTFE--------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHH--------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 888765 566666788888999999999999999999999877666654
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.11 E-value=3.4 Score=42.77 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHP-NTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP-~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
....+.+++|+++....+... .++++.+++.++..+.| ..-..++.||..+.++|+|++|+.+++..|++-
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 456788999999998777654 33555555555555546 567788999999999999999999999999874
No 238
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.95 E-value=4.2 Score=52.90 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKA 961 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKA 961 (1888)
.|..||..+...|+++.|+..|.++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4555555555555555555555443
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.02 E-value=1.6 Score=46.63 Aligned_cols=104 Identities=18% Similarity=0.075 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000191 937 AYSLLAVVLYHTGDF------NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLT 1010 (1888)
Q Consensus 937 ay~~LA~ly~~lGdy------eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki 1010 (1888)
.+..........|+. +.-++.|++|+....-.........+..+...|.+ ...++.++|...|+.++.+
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~---- 89 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN---- 89 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH----
Confidence 344444445555777 66667777777653221111233455666777766 5669999999999999986
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
|...+.++...|....++|+...|...+.+|+.++
T Consensus 90 ----hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 90 ----CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp ----CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ----hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 23338888889999999999999999999999864
No 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.80 E-value=1.9 Score=56.14 Aligned_cols=29 Identities=14% Similarity=0.005 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000191 977 MKSYGDLAVFYYRLQHTELALKYVKRALY 1005 (1888)
Q Consensus 977 a~ay~nLA~ly~~lGdyeeALey~~kALe 1005 (1888)
...+.+||..+...++++.|+++|.++-.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 35778999999999999999999998643
No 241
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.07 E-value=1.1 Score=56.48 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000191 935 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPS 1014 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~d 1014 (1888)
-.++..||.+......+..|..+|.+|+.+ .|.....|+.||.++...|+.-+|+-||.+++.. .
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-------~ 216 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-------K 216 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-------S
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-------C
Confidence 357788999999999999999999999998 5888999999999999999999999999999853 1
Q ss_pred ChhHHHHHHHHHHHHH
Q 000191 1015 HPNTAATYINVAMMEE 1030 (1888)
Q Consensus 1015 hP~~a~a~~NLA~iy~ 1030 (1888)
.| ...+..||..++.
T Consensus 217 ~P-f~~a~~nL~~~f~ 231 (497)
T 1ya0_A 217 FP-FPAASTNLQKALS 231 (497)
T ss_dssp BC-CHHHHHHHHHHHH
T ss_pred CC-ChhHHHHHHHHHH
Confidence 22 2344555555554
No 242
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=88.45 E-value=0.76 Score=43.42 Aligned_cols=74 Identities=11% Similarity=0.209 Sum_probs=53.9
Q ss_pred cCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcC--CcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 22 LPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNT--ETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~--~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
+|..++|+|++.......+..-++++|.||++.|...- +-+.-....|.+ +|..|+|-..+.+. .|++|.|+-
T Consensus 2 ~~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~i~l~~ 79 (85)
T 2wyq_A 2 IPMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSDDVPIRDYRIDEKNFVVVMV 79 (85)
T ss_dssp --CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE--TTEECCTTSBGGGGCCCTTSEEEEEE
T ss_pred CCceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE--CCEECcCCCCHHHcCCCCCCEEEEEE
Confidence 47789999999976554443335699999999999862 335556666764 99999997777775 378888875
Q ss_pred c
Q 000191 97 E 97 (1888)
Q Consensus 97 e 97 (1888)
-
T Consensus 80 ~ 80 (85)
T 2wyq_A 80 T 80 (85)
T ss_dssp C
T ss_pred c
Confidence 3
No 243
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=88.09 E-value=0.48 Score=46.58 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=55.6
Q ss_pred ccCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 21 VLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 21 ~~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
--+..++|+|+++....+.+..-.+++|.+|.+.+...... ......|.+ +|.+|+|-..+.++ .|++|.||-
T Consensus 17 ~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gi-p~~~qrLif--~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 17 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV-PMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp --CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTC-CGGGEEEEE--TTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred CCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC-ChhhEEEEE--CCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 35678999999998776666555679999999999987664 345666765 99999998777764 378888874
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.63 E-value=4 Score=42.63 Aligned_cols=77 Identities=10% Similarity=0.079 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 1019 AATYINVAMMEEGLGNVH---VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1019 a~a~~NLA~iy~~lG~ye---eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~L 1095 (1888)
..+.+++|+++....+.+ +++.+++..++. .....-.+++.||..+.++|+|+.|..+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~----- 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----
Confidence 477889999999887653 566666655542 22346788999999999999999999999988854
Q ss_pred CCCCHHHHHHHH
Q 000191 1096 GPDDLRTQDAAA 1107 (1888)
Q Consensus 1096 G~dh~~tl~a~~ 1107 (1888)
.|++.+......
T Consensus 108 eP~N~QA~~Lk~ 119 (134)
T 3o48_A 108 ERNNKQVGALKS 119 (134)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 567765544433
No 245
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=87.29 E-value=0.84 Score=43.77 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=53.8
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccc--ccCceeEEecc
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAA--LKPCVLSLTEE 97 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--lk~~~L~lVee 97 (1888)
|..++|+|++.......+..-++++|.+|++.|..... ..-....|.+ +|..|+|...+.+ |.|++|.||-.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~qrLi~--~Gk~L~d~~tL~~~~i~g~~i~l~~~ 76 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS-IPSEKQRLIY--QGRVLQDDKKLQEYNVGGKVIHLVER 76 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTSBGGGGTCTTEEEEEEEC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC-CCHHHEEEEE--CCeECCCCCCHHHcCCCCcEEEEEec
Confidence 56799999999876655544466999999999988653 3444455654 9999999776766 35899988853
No 246
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=87.24 E-value=0.68 Score=45.97 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=50.9
Q ss_pred cCeEEEEEEEcCCCCc--eEEEccChhhHHHHHHHhhhc-CCcccccccccccccCCCccCCccccccc-----cCceeE
Q 000191 22 LPVVLDITVNLPDDTR--VILKGISTDRIIDVRRLLSVN-TETCSITNFSLSHEIRGPRLKDAVDVAAL-----KPCVLS 93 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~--~~~~~is~d~v~dvrq~L~~~-~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l-----k~~~L~ 93 (1888)
.+..++|+|++|.... +.+..-++++|.+|++.|.+. +.-..-...-|-+ +|..|+|-..|++. .|++|.
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy--~Gk~L~D~~tL~~y~~~I~~~~tih 97 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY--SGRLLPDHLQLKDILRKQDEYHMVH 97 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE--TTEEECTTSBTHHHHTTTCSEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE--CCEECCCCCCHHHHhcCCCCCCEEE
Confidence 3567999999998763 333334569999999999984 4443335555764 99999998878765 368888
Q ss_pred Ee
Q 000191 94 LT 95 (1888)
Q Consensus 94 lV 95 (1888)
||
T Consensus 98 Lv 99 (99)
T 2kdb_A 98 LV 99 (99)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.93 E-value=3.4 Score=50.31 Aligned_cols=105 Identities=13% Similarity=-0.002 Sum_probs=76.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCC---CCh-----------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 987 YYRLQHTELALKYVKRALYLLHLTCGP---SHP-----------NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 987 y~~lGdyeeALey~~kALeL~~ki~G~---dhP-----------~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
....|+.+.|...+.+|+.+|.--+-. ..+ ....+...++..+...|++.+|+..++.++...
T Consensus 125 ~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--- 201 (388)
T 2ff4_A 125 AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH--- 201 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---
Confidence 344678888888888888876321101 111 112345567778889999999999999887652
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCC
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDD 1099 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh 1099 (1888)
|..-.++..|-.+|...|+..+|+..|+++...+.+.+|-+-
T Consensus 202 -----P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 202 -----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp -----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333346777788999999999999999999999999888664
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=86.83 E-value=8.4 Score=41.76 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------H
Q 000191 938 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL----------L 1007 (1888)
Q Consensus 938 y~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL----------~ 1007 (1888)
...++.+++..|+|..|+-++. .-+++.+.+.-++||...++|.+|+..+...++- .
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~-------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~ 102 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLH-------------KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDAR 102 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH-------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH
T ss_pred HhhhhhhhhhcchHhHHHHHHH-------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccc
Confidence 4567888999999988776543 2456777777889999999999999999988831 1
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1008 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1008 ~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
...+--+..+--..++.+|.++...|+.++|+.++..+..+
T Consensus 103 ~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 103 IQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 11111122233445777999999999999999999887765
No 249
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=85.91 E-value=20 Score=41.40 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 000191 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 994 eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~ 1049 (1888)
+.|+..|+.|+++....+.+.||..+....|.+..|.. +++.++|+.+.++|++-.
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~A 208 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 208 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 57899999999999887899999998888899988776 689999998888877653
No 250
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.75 E-value=4.7 Score=43.14 Aligned_cols=97 Identities=12% Similarity=-0.048 Sum_probs=70.8
Q ss_pred HHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCc
Q 000191 984 AVFYYRLQHT------ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDH 1057 (1888)
Q Consensus 984 A~ly~~lGdy------eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~ 1057 (1888)
.......|+. ++-++.|++|+...--.........+..+...|.. ...++.++|.+.|+.++.+. +
T Consensus 20 l~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~h-K------ 91 (161)
T 4h7y_A 20 LLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANC-K------ 91 (161)
T ss_dssp HHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHC-T------
T ss_pred HHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHh-H------
Confidence 3334444776 67778888887753221112234567777777765 56699999999999999872 1
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
..+.++...|+.-.++|+...|...+.+|+.
T Consensus 92 -kFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 92 -KFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp -TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 1278888889999999999999999999985
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.64 E-value=4.8 Score=53.23 Aligned_cols=123 Identities=14% Similarity=0.003 Sum_probs=78.9
Q ss_pred cCC-hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHHHHHhcC---CCC-----
Q 000191 906 KGK-LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVV---LYHTGDFNQATIYQQKALDINERELG---LDH----- 973 (1888)
Q Consensus 906 qGd-~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~l---y~~lGdyeeAl~~~eKAL~I~Er~lG---~Dh----- 973 (1888)
.|+ ++.|+.++++.... +|.... +...+.+ .....+--+|+.+..+++.-...... ..+
T Consensus 261 t~~~~~~a~~~le~L~~~--------~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKK--------DPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHH--------CGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhh--------CCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445 46688877775443 343322 2222222 22223445688888887754322111 111
Q ss_pred --hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000191 974 --PDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 974 --p~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
+.....+.--+.++...|+|+.|+++.++|..+ -|.-..++..||.+|..+|+|+.|+-.+..+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 111223444588888999999999999999986 3667889999999999999999999877654
No 252
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=85.00 E-value=1.3 Score=41.52 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=52.2
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+.++|+|+.+......+..-++++|.|+++.|..... .+-....|.+ +|..|+|...+.++. +++|.|+-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-i~~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGCEEEE--TTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC-cChHHEEEEE--CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 4589999999865554443456999999999998653 4445666765 999999988787753 68888874
No 253
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.76 E-value=4.4 Score=42.82 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLGNVH---VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~ye---eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
-...+.+++|+++....+.+ +++.+++..++. ++ ...-.+++.||..++++|+|.+|..+.+..+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--- 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AE--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--- 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CC--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----Cc--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---
Confidence 34677889999999887654 566666665542 12 245678999999999999999999999988854
Q ss_pred hcCCCCHHHHHH
Q 000191 1094 KLGPDDLRTQDA 1105 (1888)
Q Consensus 1094 ~LG~dh~~tl~a 1105 (1888)
.|++.+....
T Consensus 107 --eP~n~QA~~L 116 (144)
T 1y8m_A 107 --ERNNKQVGAL 116 (144)
T ss_dssp --CCCCHHHHHH
T ss_pred --CCCcHHHHHH
Confidence 6777665443
No 254
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=84.23 E-value=1.6 Score=40.61 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=52.8
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
..++|+|+++.+....+..-++++|.++++.|..... .+-....|.+ +|..|+|...+++.. |++|.||-
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG-VQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC-CCHHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3589999999876655544466999999999988654 3444556664 999999988888754 78888873
No 255
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=84.16 E-value=1.7 Score=43.01 Aligned_cols=75 Identities=15% Similarity=0.319 Sum_probs=51.1
Q ss_pred cccccCeEEEEEEEcCCCCceEE-Ecc-ChhhHHHHHHHh-hhcCCcccccccccccccCCCccCCcccccc--c-c-Cc
Q 000191 18 EEKVLPVVLDITVNLPDDTRVIL-KGI-STDRIIDVRRLL-SVNTETCSITNFSLSHEIRGPRLKDAVDVAA--L-K-PC 90 (1888)
Q Consensus 18 ~e~~~~~~~~itv~lP~~~~~~~-~~i-s~d~v~dvrq~L-~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--l-k-~~ 90 (1888)
+.|..+..++|+|+++.+....+ ..+ ++++|.+|++.| ...+ -+.-..--|-+ +|..|+|-..|++ | + |+
T Consensus 12 ~~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~-gip~~~QrLi~--~Gk~L~D~~tL~dy~I~~~g~ 88 (98)
T 4a20_A 12 DDKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEK-ASHISEIKLLL--KGKVLHDNLFLSDLKVTPANS 88 (98)
T ss_dssp ------CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTS-CSCGGGEEEEE--TTEEECTTCBGGGSCCBTTBC
T ss_pred cccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhc-CCChhhEEEEE--CCEECcCcCCHHHcCcCCCCC
Confidence 45567888999999998774333 334 569999999999 5543 45556666764 9999999877777 4 3 67
Q ss_pred eeEEe
Q 000191 91 VLSLT 95 (1888)
Q Consensus 91 ~L~lV 95 (1888)
+|.|+
T Consensus 89 ti~lm 93 (98)
T 4a20_A 89 TITVM 93 (98)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.12 E-value=28 Score=48.26 Aligned_cols=103 Identities=13% Similarity=-0.067 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------HHhc--CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDIN-------------EREL--GLDHPDTMKSYGDLAVFYYRLQHTELALKYVK 1001 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~-------------Er~l--G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~ 1001 (1888)
..+.+|++|...|++++|..+|++|-... .... ..........|..+..++...+.++.++++.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45889999999999999999999873211 0000 00112234567888889999999999999999
Q ss_pred HHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHH
Q 000191 1002 RALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLH 1043 (1888)
Q Consensus 1002 kALeL~~ki~G~dhP~~-a~a~~NLA~iy~~lG~yeeAle~Le 1043 (1888)
.|+.. .+.+.+.. ...+.++=..+..+|+|++|...+-
T Consensus 924 lAi~~----~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 924 LADAS----KETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHH----CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHh----ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99875 23344432 3357777778888899998877663
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.11 E-value=6.1 Score=52.25 Aligned_cols=86 Identities=12% Similarity=0.020 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHHHHHHhc---CCCC-------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 000191 992 HTELALKYVKRALYLLHLTC---GPSH-------PNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTA 1061 (1888)
Q Consensus 992 dyeeALey~~kALeL~~ki~---G~dh-------P~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA 1061 (1888)
+--+|+..+.+++.-..... ...+ +.....+.-.+..+...|+|+-|+.+.++|+.+. |.-.
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--------PseF 371 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--------LDSF 371 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSCH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--------chhh
Confidence 34567778877775432211 1111 2223456666888889999999999999999885 4456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1062 ASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1062 ~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
.+++.||.+|..+|+|+.|+-.+.
T Consensus 372 ~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 372 ESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHh
Confidence 789999999999999999987654
No 258
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=83.66 E-value=1.6 Score=42.04 Aligned_cols=70 Identities=20% Similarity=0.216 Sum_probs=52.2
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
+..++|+|++..+....+..-.+++|.|+++.|..... ..-....|.+ +|..|+|...+.+.. |++|.||
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~ 87 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLV 87 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGCEEEE--TTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC-CChhhEEEEE--CCeECCCcCcHHHCCCCCCCEEEEE
Confidence 45789999999775554443456999999999988654 3334455664 999999988887753 7888887
No 259
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=83.62 E-value=1.6 Score=41.63 Aligned_cols=71 Identities=15% Similarity=0.174 Sum_probs=52.8
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccc--ccCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAA--LKPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--lk~~~L~lVe 96 (1888)
|..++|+|+++......+..-++++|.++++.|..... ..-...-|.+ +|..|+|...+.+ +.|++|.||.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~~~i~g~~i~lv~ 87 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS-IPSEKQRLIY--QGRVLQDDKKLQEYNVGGKVIHLVE 87 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTSBGGGGTCTTEEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC-CCHHHEEEEE--CCEECCCCCcHHHcCCCCcEEEEEE
Confidence 56799999999776655443466999999999988654 3334445654 9999999777776 4589999874
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.02 E-value=14 Score=39.02 Aligned_cols=70 Identities=17% Similarity=0.108 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
....+.+++|+++....+... .++++.+.+.++..+....-.+++.||..++++|+|++|++|....|++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~d----i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVND----ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHH----HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345788899999988876543 2344444444433222356688999999999999999999999999885
No 261
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.96 E-value=18 Score=39.62 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=64.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 980 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay 980 (1888)
...++.|+++.|.++.++. +....|..||......|+++-|...|+++-. +
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------------~ 63 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------------F 63 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------------H
T ss_pred HHHHhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------------H
Confidence 3446789999888776542 1235789999999999999999988877633 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA 1045 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekA 1045 (1888)
..|..+|...|+.+.-....+.|.. .+.. +....++..+|+++++++.|.++
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~-------~g~~------n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQT-------REDF------GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH-------TTCH------HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-------CccH------HHHHHHHHHcCCHHHHHHHHHHC
Confidence 3455666777776554433333321 1111 11234456778888887777543
No 262
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=82.94 E-value=1.7 Score=39.71 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
++|+|+++......+..-+.++|.|+++.|..... .+.....|.+ +|..|+|-..+.+. .|++|.|+-
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~-i~~~~q~L~~--~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG-IPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC-cChHHEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 47899999776554443355999999999998654 4455666765 99999998777775 378888874
No 263
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=82.87 E-value=1.6 Score=43.59 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=50.2
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+++|+|++..+....+..-.+++|.||++.|..... +.-...-|. ++|..|+|...|.++. |++|.||-
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi--~~Gk~L~D~~tL~~~~i~~g~~i~lv~ 72 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS-CEESQIKLI--YSGKVLQDSKTVSECGLKDGDQVVFMV 72 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT-SCGGGCEEE--ETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CChhhEEEE--ECCEECCCcCCHHHcCCCCCCEEEEEE
Confidence 368999998766554443356999999999999764 444455666 4999999987777753 78888874
No 264
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=82.33 E-value=1.5 Score=43.06 Aligned_cols=70 Identities=19% Similarity=0.185 Sum_probs=52.5
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
..++|+|+++......+..-++++|.|+++.|..... .+-....|.+ +|..|+|...|.++. |++|.||-
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGCEEEE--TTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC-CChhHEEEEE--CCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3589999998766555544456999999999998654 4445566764 999999988888753 78888873
No 265
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=82.25 E-value=2.5 Score=43.57 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=59.6
Q ss_pred CCCCCCc--cccccccccccccCeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccC
Q 000191 3 PRNSRGK--AKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLK 79 (1888)
Q Consensus 3 ~~~~~~~--~k~~~~kk~e~~~~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~ 79 (1888)
|+..||. ..|-...++| +..++|+|+.. .+.+.+.+ ..++|.||++.|..... +......|. ++|..|+
T Consensus 11 ~~~~~~~~~~~~s~~~~~~---~~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi--~~Gk~L~ 82 (125)
T 1j8c_A 11 PRPSRGPAAAQGSAAAPAE---PKIIKVTVKTP--KEKEEFAVPENSSVQQFKEAISKRFK-SQTDQLVLI--FAGKILK 82 (125)
T ss_dssp CSSCCCSCCCCCSSSCCCC---CCCEEEEEECS--SCEEEEEECTTCCHHHHHHHHHHHHC-SCSSSEEEE--ETTEEES
T ss_pred CChhhCCcCCCCCCcccCC---CCcEEEEEEeC--CeEEEEEECCCCcHHHHHHHHHHHHC-cCcceEEEE--ECCEEcC
Confidence 4455554 3444444443 35799999998 33444455 45999999999998654 344555666 4999999
Q ss_pred Cccccccc---cCceeEEeccC
Q 000191 80 DAVDVAAL---KPCVLSLTEED 98 (1888)
Q Consensus 80 d~~ei~~l---k~~~L~lVeep 98 (1888)
|-..|.++ .|++|.||--+
T Consensus 83 D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 83 DQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp TTSCGGGTTCSSSEEEEEEEC-
T ss_pred CCCCHHHcCCCCCCEEEEEecc
Confidence 97777775 37999888643
No 266
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.13 E-value=1.9 Score=40.18 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=51.3
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
+..++|+|+++......+..-..++|.|+++.|..... .......|.+ +|..|+|-..+.+. .|++|.|+-
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~-i~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN-VPVRQQRLLF--KGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC-CCTTTCEEEE--TTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-cCHHHEEEEE--CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 34689999988764443333355999999999998654 3445566764 99999997777775 378888774
No 267
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=82.09 E-value=2.1 Score=40.53 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=52.5
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
..++|+|+++......+..-++++|.|+++.|..... .+.....|.+ +|..|+|...+.++. |++|.|+
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~i~l~ 82 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG-IPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHLV 82 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGCCEEE--TTEECCTTSBGGGGTCCTTCEEEEC
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC-cCHHHEEEEE--CCeECCCCCcHHHcCCCCCCEEEEE
Confidence 4689999999766554444466999999999988654 4455566764 999999988888763 6888886
No 268
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=81.82 E-value=1.3 Score=42.01 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=52.4
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
|..++|+|+++......+..-..++|.||++.|..... .......|.+ +|..|+|-..+.+. .|++|.|+-
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-i~~~~qrL~~--~Gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG-LPKKQQQLEF--QGQVLQDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC-CCTTTEEEEE--TTEECCSSSBHHHHTCCTTEEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC-CChHHEEEEE--CCEEccCCCCHHHCCCCCCCEEEEEE
Confidence 56799999998764443333355999999999998764 4455666764 99999997777765 368888874
No 269
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=81.77 E-value=12 Score=40.72 Aligned_cols=97 Identities=11% Similarity=-0.015 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HH
Q 000191 981 GDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC----------NQ 1050 (1888)
Q Consensus 981 ~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei----------~e 1050 (1888)
..++.+++..|+|..|+-++.. -.++.+.+.-+.||..+++|..|+..++..++- ..
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-------------lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-------------LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-------------CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred hhhhhhhhhcchHhHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 4567788889998887754322 134555666799999999999999999998831 11
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000191 1051 RLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQI 1090 (1888)
Q Consensus 1051 k~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI 1090 (1888)
..+--+....-.-+..+|.++.+.|+.++|+.++..++.+
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 1111122223345667899999999999999999988764
No 270
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=81.54 E-value=1.9 Score=39.42 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
++|+|++++.....+..-++++|.|+++.|..... .......|.+ +|..|+|...+++. .|++|.|+-
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~-i~~~~q~L~~--~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC-cCHHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 47899998775444443355999999999998654 3455666765 99999997777775 378888874
No 271
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.25 E-value=5.1 Score=41.88 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000191 893 GRQLLESSKTALDKGKL---EDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 893 A~~LlelG~~~l~qGd~---dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
....|+.|..+....+- .+++.+++..+.. .....-.|++.||..++++|+|++|..+.+..|.+
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 45566677777766543 3456665554432 22245689999999999999999999999988876
No 272
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=81.20 E-value=1.3 Score=41.55 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=51.4
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+.++|+|+.+......+..-++++|.|+++.|..... .+.....|.+ +|..|+|...+.+.. +++|.|+-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-ip~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHEEEEE--CCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 3578999999765554444466999999999998653 4455666765 999999988787753 68888874
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.08 E-value=2.4 Score=53.43 Aligned_cols=145 Identities=11% Similarity=0.073 Sum_probs=60.3
Q ss_pred HHHHcCChHHHHHHHHHHH--HHHHHhc-CCCChhHHHHHHHHHHHHHhcCCHHHHHHHH------HHHH-HHHHH-hcC
Q 000191 902 TALDKGKLEDAVTYGTKAL--AKLVAVC-GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQ------QKAL-DINER-ELG 970 (1888)
Q Consensus 902 ~~l~qGd~dEAie~~eeAL--~l~eqi~-G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~------eKAL-~I~Er-~lG 970 (1888)
.+++++++++|..+....+ ....... -..+...+.+|+.++.+|...|+........ +..+ ..++. ++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456778888887776554 2221110 0124456788999999998888876643221 1111 11111 223
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 971 LDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 971 ~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.|....+..++.|=..|...+.|++|..+..++.-. . ........+..++.+|.++.-+++|.+|.++|..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~-~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--H-TDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--T-TTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--c-ccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 344455667777888899999999999998887421 0 001224567778889999999999999999999988643
No 274
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=81.08 E-value=1.5 Score=40.85 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=53.2
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
.++|+|++.....+.+..-++++|.+|.+.+.+... .......|.+ +|..|+|-..+.++. |++|.|+-
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g-i~~~~qrL~~--~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG-VPMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC-CCcccEEEEE--CCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 489999999887666655567999999999998755 3445666764 999999987777653 68888874
No 275
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=80.61 E-value=4.2 Score=51.30 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
.++..||.+......+..|..||.+|+.+ .|.....|+.||.+....|+.-+|+-+|-++|..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 56788999999999999999999999987 4777889999999999999999999999998854
No 276
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=79.82 E-value=2.1 Score=42.69 Aligned_cols=68 Identities=22% Similarity=0.247 Sum_probs=50.3
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc--c-CceeEEe
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL--K-PCVLSLT 95 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l--k-~~~L~lV 95 (1888)
.++|+|+++......+..-+.|+|.||.+.|.+.... ...---|. +.|..|+|-..|.+. + |++|.|+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gi-p~~qQrLi--~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGT-RWNKIVLK--KWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCC-CGGGCEEE--ETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCC-CHHHEEEE--ECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 5999999997744444444669999999999998653 34444455 489999997777763 3 6888876
No 277
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=79.21 E-value=2.2 Score=41.39 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=49.3
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCc-cccccc---cCceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDA-VDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~-~ei~~l---k~~~L~lVe 96 (1888)
..++|+|++.......+..-..++|.||++.|.... .....|.+ +|..|+|- ..|.++ .|++|.||-
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~----~~~qrLi~--~Gk~L~D~~~tL~~y~i~~g~~i~l~~ 76 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ----ESQMKLIY--QGRLLQDPARTLSSLNITNNCVIHCHR 76 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST----TTTCEEEE--TTEECCCSSCBTTTTTCCTTEEEEEEC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC----cCcEEEEE--CCEEccCCcCCHHHcCCCCCCEEEEEE
Confidence 458999998766544443335599999999999875 44556664 99999887 777765 378888874
No 278
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=79.16 E-value=2.4 Score=40.70 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|++.......+..-++++|.|+++.|..... ..-...-|.+ +|..|+|...+++.. |++|.||-
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG-IPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGCEEEE--TTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC-cChhHEEEEE--CCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 47899998776655544466999999999988654 3344555664 999999988888753 78888873
No 279
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=79.11 E-value=2.3 Score=41.07 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=51.0
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|++.......+..-++++|.|+++.|..... .+.....|.+ +|..|+|...+.++. |++|.||-
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g-ip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC-CChhHEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 57999999866554443456999999999998653 3445566664 999999988888753 78888873
No 280
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.83 E-value=2.2 Score=41.27 Aligned_cols=71 Identities=20% Similarity=0.064 Sum_probs=51.9
Q ss_pred eEEEEEEEcCCCCc-eEEEcc-ChhhHHHHHHHhhhcC-CcccccccccccccCCCccCCccccccc-----cCceeEEe
Q 000191 24 VVLDITVNLPDDTR-VILKGI-STDRIIDVRRLLSVNT-ETCSITNFSLSHEIRGPRLKDAVDVAAL-----KPCVLSLT 95 (1888)
Q Consensus 24 ~~~~itv~lP~~~~-~~~~~i-s~d~v~dvrq~L~~~~-~Tc~~T~fsL~~~~~G~~L~d~~ei~~l-----k~~~L~lV 95 (1888)
..++|+|+++.... .+...+ .+++|.||++.|.... .-..-....|.+ +|..|+|-..+.+. .+++|.||
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~--~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY--SGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE--TTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE--CCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 46899999998763 333344 5699999999999864 234455556664 99999887777765 36889888
Q ss_pred c
Q 000191 96 E 96 (1888)
Q Consensus 96 e 96 (1888)
-
T Consensus 84 ~ 84 (93)
T 1wgd_A 84 C 84 (93)
T ss_dssp C
T ss_pred e
Confidence 4
No 281
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.75 E-value=1.3 Score=44.45 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=52.2
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccc---------------cccccccccCCCccC-Cccccccc
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSI---------------TNFSLSHEIRGPRLK-DAVDVAAL 87 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~---------------T~fsL~~~~~G~~L~-d~~ei~~l 87 (1888)
..++|+|++-+.....+..-..++|.||++.|.+... ++- .+|.|-+ +|..|. |...|.+.
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~-i~~~~q~g~~~isw~~~w~q~~Li~--~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ-LKQEREGGVQHISWSYVWRTYHLTS--AGEKLTEDRKKLRDY 82 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH-HHHHHTTCCCCCCHHHHHTTEEEES--SSCEECCSSSBHHHH
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC-CCcccccCcceeeeeecceeEEEEe--CCcCccCCcCCHHHc
Confidence 3489999988776666554566999999999998653 221 4678885 999995 66777764
Q ss_pred c---CceeEEec
Q 000191 88 K---PCVLSLTE 96 (1888)
Q Consensus 88 k---~~~L~lVe 96 (1888)
+ |++|++|-
T Consensus 83 gI~~g~~l~lv~ 94 (105)
T 1v2y_A 83 GIRNRDEVSFIK 94 (105)
T ss_dssp TCCSSEEEEEEE
T ss_pred CCCCCCEEEEEe
Confidence 3 78898874
No 282
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=78.70 E-value=3.3 Score=41.52 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=52.1
Q ss_pred CeEEEEEEEcCC--CCceEEEcc-C-hhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEe
Q 000191 23 PVVLDITVNLPD--DTRVILKGI-S-TDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLT 95 (1888)
Q Consensus 23 ~~~~~itv~lP~--~~~~~~~~i-s-~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lV 95 (1888)
|..++|+|++|. ..+.+...+ + +++|.+|++.|..... +.-..-.|.+ +|..|+|...+++. .|++|.||
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g-ip~~~QrL~~--~Gk~L~D~~tL~~y~I~~g~~l~l~ 101 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ-IPANKQKLSG--KAGFLKDNMSLAHYNVGAGEILTLS 101 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT-CCTTTSEEEC--SSSBCCTTSBTTTTTCSSSCEEEEE
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC-CCHHHeEEEE--CCEECCCCCcHHHCCCCCCCEEEEE
Confidence 578999999994 233444445 4 6999999999998754 3344555664 89999997777775 37899887
Q ss_pred c
Q 000191 96 E 96 (1888)
Q Consensus 96 e 96 (1888)
-
T Consensus 102 ~ 102 (111)
T 1we6_A 102 L 102 (111)
T ss_dssp C
T ss_pred E
Confidence 4
No 283
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=78.40 E-value=0.81 Score=33.33 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.7
Q ss_pred CCCCCCCCCccCCCCC
Q 000191 1689 CNGNSNVPEFIPGPFL 1704 (1888)
Q Consensus 1689 ~~~~~~~~~f~p~~~~ 1704 (1888)
.++||++-||+||--+
T Consensus 4 s~lnp~akef~pgvky 19 (26)
T 1jgn_B 4 SNLNPNAKEFVPGVKY 19 (26)
T ss_dssp CSSCTTCCCCCTTSCT
T ss_pred ccCCcchhhcCCCcee
Confidence 4799999999999654
No 284
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=77.97 E-value=1e+02 Score=35.15 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcC
Q 000191 1036 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1036 eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeAle~lqkALeI~kk~LG 1096 (1888)
+.|...|++|+++....+.+.||.......|.+..|+. +++.++|....++|+.-....++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld 208 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELD 208 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Confidence 57899999999999888899999888888888877765 79999999999999876666544
No 285
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.96 E-value=2.6 Score=41.91 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=51.7
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
.++|+|++.......+..-.+++|.+|++.|..... +......|.+ +|..|+|-..|.+. .|++|.||-
T Consensus 23 ~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~ygI~~g~ti~lv~ 94 (106)
T 1ttn_A 23 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG-VEPGSQRWFF--SGRPLTDKMKFEELKIPKDYVVQVIV 94 (106)
T ss_dssp SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC-CCSTTCEEEE--TTEECCTTSHHHHCCCSSSCEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC-cCcccEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 489999998774444433355999999999998755 4455666764 99999997777765 379998885
No 286
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=77.59 E-value=1.1e+02 Score=35.24 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhc
Q 000191 1035 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1035 yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeAle~lqkALeI~kk~L 1095 (1888)
.+.|...|++|+++....+.+.||....+..|.+..|+. +++.++|....++|+.-....+
T Consensus 147 ~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~el 208 (248)
T 3uzd_A 147 VESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAEL 208 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999888899999888888888877765 7999999999999987665543
No 287
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=76.93 E-value=3 Score=40.53 Aligned_cols=69 Identities=7% Similarity=0.142 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcC--CcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNT--ETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~--~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
++|+|+++......+..-..++|.||++.|.... +-+......|.+ +|..|+|-..+.+. .|++|.|+-
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~g~~i~l~~ 74 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY--AGKILNDDTALKEYKIDEKNFVVVMV 74 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE--TTEECCTTSBGGGGTCCSSSEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE--CCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 4789999876555444335599999999999863 334555666764 99999997777775 378888764
No 288
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=76.37 E-value=3.3 Score=39.63 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=52.5
Q ss_pred eEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEeccCC
Q 000191 24 VVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTEEDF 99 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVeepY 99 (1888)
..++|+|+++...... ..+ ++++|.+|++.|..... +.-....|.+ +|..|+|-..+.+. .|++|.||-.+.
T Consensus 3 ~~m~I~Vk~~~g~~~~-~~v~~~~TV~~LK~~I~~~~g-ip~~~qrL~~--~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 3 EPLSILVRNNKGRSST-YEVRLTQTVAHLKQQVSGLEG-VQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp CEEEEEEEETTSCEEE-EEEESSSBHHHHHHHHHHHTC-SCTTTEEEES--SSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred ccEEEEEECCCCCEEE-EEECCCCcHHHHHHHHHHHhC-CChhHEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence 3589999999874443 345 55999999999998754 4445556664 99999997777764 379999986654
Q ss_pred CH
Q 000191 100 DE 101 (1888)
Q Consensus 100 te 101 (1888)
--
T Consensus 79 gg 80 (88)
T 2hj8_A 79 GG 80 (88)
T ss_dssp --
T ss_pred CC
Confidence 43
No 289
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=76.11 E-value=3.6 Score=41.25 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=52.8
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+..++|+|+++......+..-..++|.++++.|..... ++.....|.+ +|..|+|-..+++.. |++|.|+-
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC-CCTTTEEEEE--TTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC-cCcccEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 45799999998765444433355999999999998654 4556666764 999999977777753 78888874
No 290
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.09 E-value=99 Score=37.03 Aligned_cols=164 Identities=10% Similarity=0.023 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
+.-..|+.++.=|..+++|++|++++...... +...|++.-|-++..-.++.+.+..-
T Consensus 33 EAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~----------------------ll~~~Q~~sg~DL~~llvevy~~~~~ 90 (336)
T 3lpz_A 33 EAAQETRLVAARYSKQGNWAAAVDILASVSQT----------------------LLRSGQGGSGGDLAVLLVDTFRQAGQ 90 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------HHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 34456667777778888888888754433222 22233333333333333333333211
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH------
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVH-VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ------ 1085 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~ye-eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq------ 1085 (1888)
+-. ......|..++.....-+ .=..++++|++-..+ .|.........+..+|..|...+++.+|..|+-
T Consensus 91 ~~~---~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s 166 (336)
T 3lpz_A 91 RVD---GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKES 166 (336)
T ss_dssp CCC---HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTH
T ss_pred CCC---HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCch
Confidence 100 122233333333332211 124466677766655 343333345677888999999999999988872
Q ss_pred -HHH-HHHH---HhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000191 1086 -TTL-QILR---AKLGPDDLRTQDAAAWLEYFESKAFEQQEA 1122 (1888)
Q Consensus 1086 -kAL-eI~k---k~LG~dh~~tl~a~~~La~L~qka~e~AeA 1122 (1888)
+.+ ++.. ...++.......+...|-++..+....|..
T Consensus 167 ~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~ 208 (336)
T 3lpz_A 167 PEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANT 208 (336)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHH
Confidence 111 2211 122333344445555566666655555543
No 291
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=75.94 E-value=3.6 Score=37.82 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=49.4
Q ss_pred EEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 25 VLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
.++|+|+. .. +.....+ ++++|.|+++.|..... .+.....|.+ +|..|+|-..+.++ .|++|.|+-
T Consensus 4 ~m~i~vk~-~g-~~~~~~v~~~~tV~~LK~~i~~~~~-i~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 4 SLNIHIKS-GQ-DKWEVNVAPESTVLQFKEAINKANG-IPVANQRLIY--SGKILKDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEEE-TT-EEEEEEECTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHHhC-CCHHHEEEEE--CCeEcCCCCCHHHcCCCCCCEEEEEE
Confidence 48899998 33 3444455 45999999999998654 4455666764 99999998777775 379998875
No 292
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=75.86 E-value=25 Score=42.06 Aligned_cols=74 Identities=11% Similarity=-0.073 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 976 TMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdy--eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
...++.|||.+....--. ..++.+|.+|+...+..|+..|. .-|..+|-.|.+.+++.+|++++-+|-...+.+
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 456777777776554332 33899999999999998887774 345568999999999999999999988877554
No 293
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=75.84 E-value=2.4 Score=41.08 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=54.4
Q ss_pred EEEEEEcCCCCceEEE-cc-ChhhHHHHHHHh-hhcCCcccccccccccccCCCccCCcccccc--c--cCceeEEeccC
Q 000191 26 LDITVNLPDDTRVILK-GI-STDRIIDVRRLL-SVNTETCSITNFSLSHEIRGPRLKDAVDVAA--L--KPCVLSLTEED 98 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~-~i-s~d~v~dvrq~L-~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--l--k~~~L~lVeep 98 (1888)
++|+|+++.+....+. .+ ++|+|.+|++.| .+.+ -+.-...-|-+ +|..|+|-..+++ + .|++|.|+--|
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~-gip~~~QrLi~--~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEK-ASHISEIKLLL--KGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTS-CSSSTTEEEEE--TTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhc-CCChHHEEEEE--CCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 6899999988755543 34 569999999999 6654 46666666764 9999999887777 4 36899988766
Q ss_pred CC
Q 000191 99 FD 100 (1888)
Q Consensus 99 Yt 100 (1888)
--
T Consensus 79 ~~ 80 (87)
T 2lxa_A 79 NL 80 (87)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 294
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=75.83 E-value=4.1 Score=37.68 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=51.8
Q ss_pred EEEEEEEcCCCCce-EEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEecc
Q 000191 25 VLDITVNLPDDTRV-ILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTEE 97 (1888)
Q Consensus 25 ~~~itv~lP~~~~~-~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVee 97 (1888)
.++|+|+++....+ .+..+ ..++|.++++.|..... ..-....|.+ +|..|+|-..+.+. .|++|.||--
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g-ip~~~qrL~~--~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH-VEPGLQRLFY--RGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC-cChhhEEEEE--CCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 37899999987664 44425 45999999999998654 4455666764 99999997777775 3788888753
No 295
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.82 E-value=3.3 Score=39.44 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=51.5
Q ss_pred EEEEEEEcCCCCceEEE-cc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEecc
Q 000191 25 VLDITVNLPDDTRVILK-GI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTEE 97 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~-~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVee 97 (1888)
.++|+|+++...+.+.. .+ ..++|.||++.|..... ..-....|.+ +|..|+|-..+.+. .|++|.||-.
T Consensus 7 ~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g-ip~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 7 GMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD-VRPECQRLFY--RGKQLENGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp CEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC-CCTTTEEEEE--TTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred cEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC-cChhhEEEEE--CCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 48999999987333434 35 45999999999998754 3455566764 99999997777764 3788888754
No 296
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=75.75 E-value=3.5 Score=41.43 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=52.9
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
..++|+|+++......+..-++++|.++++.|..... ++-....|.+ +|..|+|...+.++. |++|.||-
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi~--~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBTTTTTCCTTCEEEEEE
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC-CChHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 4799999999876555544466999999999998654 3344556664 999999988788753 78888873
No 297
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=75.48 E-value=1.2e+02 Score=34.93 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhc
Q 000191 1035 VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKL 1095 (1888)
Q Consensus 1035 yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeAle~lqkALeI~kk~L 1095 (1888)
.+.|...|++|+++....+.+.||.......|.+..|+. +++.++|....++|+.-....+
T Consensus 172 ~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eL 233 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAEL 233 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999888899999988888888877766 7999999999999987665543
No 298
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=75.47 E-value=2.5 Score=41.10 Aligned_cols=71 Identities=8% Similarity=0.092 Sum_probs=48.7
Q ss_pred cccCeEEEEEEEcCCCCceEEEccC-hhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEe
Q 000191 20 KVLPVVLDITVNLPDDTRVILKGIS-TDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLT 95 (1888)
Q Consensus 20 ~~~~~~~~itv~lP~~~~~~~~~is-~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lV 95 (1888)
+..+..++|+|+. .+.+...++ +++|.||++.|..... ..-....|.+ +|..|+|-..+.+. .|++|.||
T Consensus 14 ~~~~~~m~I~Vk~---g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~y~I~~gstI~lv 87 (93)
T 2l7r_A 14 LVPRGSMQLFVRA---QELHTFEVTGQETVAQIKAHVASLEG-IAPEDQVVLL--AGAPLEDEATLGQCGVEALTTLEVA 87 (93)
T ss_dssp ------CEEEEES---SSEEEEECCSSCBHHHHHHHHHHHHT-CCGGGCEEEE--TTEECCTTSBHHHHTCCSSCEEEEE
T ss_pred CCCCCcEEEEEEC---CCEEEEEeCCCCcHHHHHHHHHHHhC-cChhHEEEEE--CCEECCCCCcHHHCCCCCCCEEEEE
Confidence 4456779999998 244444564 4999999999998765 3455666764 99999997777764 37888887
Q ss_pred c
Q 000191 96 E 96 (1888)
Q Consensus 96 e 96 (1888)
-
T Consensus 88 ~ 88 (93)
T 2l7r_A 88 G 88 (93)
T ss_dssp C
T ss_pred E
Confidence 4
No 299
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=75.40 E-value=3.9 Score=39.85 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEecc
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
++|+|+++......+..-.+++|.|+++.|..... +......|.+ +|..|+|...+.++. |++|.|+-.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g-i~~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC-CCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-cChhhEEEEE--CCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 47899999775444433355999999999998654 4556667764 999999977777753 788888753
No 300
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.40 E-value=4.1 Score=51.43 Aligned_cols=139 Identities=12% Similarity=0.057 Sum_probs=59.7
Q ss_pred HHhcCCHHHHHHHHHHHHH------HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHh-
Q 000191 945 LYHTGDFNQATIYQQKALD------INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV-------KRALYLLHLT- 1010 (1888)
Q Consensus 945 y~~lGdyeeAl~~~eKAL~------I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~-------~kALeL~~ki- 1010 (1888)
++..+++++|..+....+. ..+|.+ +.-.+.+|+.++.+|...|+....+.-. ...+..++..
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtl---D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSL---NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhH---HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3456677777776655441 122222 2335567777788887777776543211 1122222222
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 000191 1011 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALe 1089 (1888)
+..+....+.+++.+=..|...+.|++|..+..++.-. .. .....+.+..++.+|.++..+++|.+|.+++..|+.
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP--~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYP--HT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSC--TT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCC--cc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22333445667777888999999999999998877311 00 112346678888999999999999999999998874
No 301
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.59 E-value=29 Score=41.14 Aligned_cols=127 Identities=6% Similarity=-0.075 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 933 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 933 e~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
+.-..|..++.=|..+++|++|++++..... .+...|++..|-++..-.++.+.+..-
T Consensus 31 EAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------------~ll~~~Q~~sa~DLa~llvev~~~~~~ 88 (312)
T 2wpv_A 31 EAHQTLRTIANRYVRSKSYEHAIELISQGAL----------------------SFLKAKQGGSGTDLIFYLLEVYDLAEV 88 (312)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------HHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 3445666777777778888888775444332 233334444444444444444433211
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVH-VALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQ 1085 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~ye-eAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lq 1085 (1888)
+ + .......|..++.....-+ .=..++++|++-..+. |.........+..+|..|...|++.+|..|+-
T Consensus 89 ~--~-~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~-g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 89 K--V-DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF-SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp C--C-SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT-SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C--C-CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 1 1 1222333444443322111 1246677777766554 33233345678889999999999999999883
No 302
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=73.85 E-value=1.4e+02 Score=34.62 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HH-
Q 000191 892 DGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN---ER- 967 (1888)
Q Consensus 892 ~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~---Er- 967 (1888)
.-..+..+|+..-+.++|++...+..+....-. .. . .....=.+.|+.+|-. .+.-.+.++.+. ++
T Consensus 27 ~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~-~~-~--eLt~EERnLLSvAyKN------vIg~rR~swRiissieqk 96 (260)
T 2npm_A 27 ARESNVYMAKLAEQAERYDEMAKYMKDVVEARQ-ES-E--ELTVEERNLLSVAYKN------AVGSRRSSWRIISSVEQK 96 (260)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCC-C-----CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CC-C--CCCHHHHHHHHHHHHH------HhccchHHHHHHHHHHHH
Confidence 346677788999999999999999998776310 00 1 1122334455555432 222222222221 11
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCC--CChhH-HHHHHHHHHHHHHC----------C
Q 000191 968 ELGLDHPDTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGP--SHPNT-AATYINVAMMEEGL----------G 1033 (1888)
Q Consensus 968 ~lG~Dhp~ta~ay~nLA~ly~~lGdy-eeALey~~kALeL~~ki~G~--dhP~~-a~a~~NLA~iy~~l----------G 1033 (1888)
.-+...... ..+..-| ..+. ++=..++...+.+....+-+ ..+.. +..+-..|..|.-+ .
T Consensus 97 e~~k~~~~~----~~~i~~y--r~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~ 170 (260)
T 2npm_A 97 EHSRNAEDA----SKMCGKY--RSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQS 170 (260)
T ss_dssp HHTTTCHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred hhccCcHHH----HHHHHHH--HHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHH
Confidence 101111110 1111111 1111 22223444555554443211 11111 11122233333311 1
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHHhcC
Q 000191 1034 NVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRAKLG 1096 (1888)
Q Consensus 1034 ~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeAle~lqkALeI~kk~LG 1096 (1888)
-.+.|...|++|+++. ..+.+.||.......|.+..|+. +++.++|....++|+.-.-..++
T Consensus 171 ~~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld 233 (260)
T 2npm_A 171 SAEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLD 233 (260)
T ss_dssp HHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Confidence 2357899999999999 77889999888888888877776 79999999999998876655443
No 303
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=73.81 E-value=3.4 Score=40.04 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=51.0
Q ss_pred CeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
+..++|+|+.+ .+.+...+ ..++|.||++.|..... .......|.+ +|..|+|-..|.++ .|++|.||-
T Consensus 15 ~~~m~i~Vk~~--g~~~~~~v~~~~TV~~LK~~I~~~~g-ip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (96)
T 1wx8_A 15 SRIIRVSVKTP--QDCHEFFLAENSNVRRFKKQISKYLH-CNADRLVLIF--TGKILRDQDILSQRGILDGSTVHVVV 87 (96)
T ss_dssp SCEEEEEEECS--SSEEEEEEETTCCHHHHHHHHHHHTC-SCTTTBCCEE--TTEECCTTSCHHHHTCCTTEEEECCB
T ss_pred CCcEEEEEEEC--CeEEEEEECCCCCHHHHHHHHHHHhC-CCHHHEEEEE--CCEECCCcCCHHHCCCCCCCEEEEEE
Confidence 56799999998 34444445 55999999999998754 4455666764 99999997777764 368888774
No 304
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=73.76 E-value=41 Score=38.91 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHH
Q 000191 1036 HVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSL-MEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1036 eeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~-lGdydeAle~lqkALeI~kk 1093 (1888)
+.|...|++|+++....+.+.||....+..|.+..|+. +++.++|....++|+.-...
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 210 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 210 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 57899999999999888899999888888888877775 79999999999888866544
No 305
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=73.44 E-value=4.1 Score=40.22 Aligned_cols=69 Identities=16% Similarity=0.222 Sum_probs=50.8
Q ss_pred CeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
+..++|+|+.. . +.+...+ .+++|.||++.|..... +......|. ++|..|+|-..|.++ .|++|.||-
T Consensus 23 ~~~m~I~Vk~~-g-~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrLi--~~Gk~L~D~~tL~~~gI~~g~~I~l~~ 95 (101)
T 2klc_A 23 PKIMKVTVKTP-K-EKEEFAVPENSSVQQFKEEISKRFK-SHTDQLVLI--FAGKILKDQDTLSQHGIHDGLTVHLVI 95 (101)
T ss_dssp CCCEEEEEECS-S-CEEEEEECSCCCHHHHHHHHHHHHT-CCGGGEEEE--ETTEEECTTCCTGGGTCCTTCEEEEEE
T ss_pred CCeEEEEEEeC-C-cEEEEEECCCCCHHHHHHHHHHHHC-cChhhEEEE--ECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 46799999998 3 3444455 45999999999998654 344555666 499999997777765 378888875
No 306
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=72.84 E-value=31 Score=41.97 Aligned_cols=74 Identities=16% Similarity=0.034 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 976 TMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdy--eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
...++.|||.+....--. ..++.+|.+|+...+..|+..|. .-|..+|-.|.+.+++.+|+.++-+|-...+.+
T Consensus 276 YPmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 351 (550)
T 3u84_A 276 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQDY 351 (550)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred CchhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 446667777766544222 24889999999999998887764 345668999999999999999998888776544
No 307
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.54 E-value=69 Score=39.00 Aligned_cols=108 Identities=10% Similarity=-0.073 Sum_probs=76.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000191 942 AVVLYHTGDFNQATIYQQKALDINERELGL---------DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCG 1012 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~---------Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G 1012 (1888)
..+.....+.++|+.++.+......+..+. +....+.+...++.+|...++.++|..+++++-.......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 445566788999999887764433222111 11234566678899999999999999999999988877544
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000191 1013 PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 1013 ~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ 1049 (1888)
.+....+..|...+..|...++|..+...+-.++...
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 4434556667777888889999988777666666554
No 308
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=72.47 E-value=4 Score=40.31 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=53.5
Q ss_pred cccCeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEe
Q 000191 20 KVLPVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLT 95 (1888)
Q Consensus 20 ~~~~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lV 95 (1888)
+..+..++|+|+++... . ...+ .+++|.||++.|..... +.-....|. ++|..|+|-..|.+. .|++|.||
T Consensus 17 ~~~~~~m~I~Vk~~~g~-~-~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi--~~Gk~L~D~~tL~~ygI~~gstI~l~ 91 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK-E-DFSVTDTCTIQQLKEEISQRFK-AHPDQLVLI--FAGKILKDPDSLAQCGVRDGLTVHLV 91 (100)
T ss_dssp SCCTTEEEEEEECSSCE-E-EEEEETTCBHHHHHHHHHHHHT-CCGGGEEEE--ETTEECCTTSBHHHHTCCTTCEEEEE
T ss_pred CCCCCeEEEEEEcCCCc-E-EEEECCCCcHHHHHHHHHHHHC-cChhhEEEE--ECCEECCCcCcHHHCCCCCCCEEEEE
Confidence 45677899999999774 3 3345 55999999999998654 445556666 499999997777764 37888887
Q ss_pred c
Q 000191 96 E 96 (1888)
Q Consensus 96 e 96 (1888)
-
T Consensus 92 ~ 92 (100)
T 1yqb_A 92 I 92 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 309
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.17 E-value=35 Score=41.58 Aligned_cols=108 Identities=10% Similarity=-0.075 Sum_probs=77.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcC
Q 000191 984 AVFYYRLQHTELALKYVKRALYLLHLTCGP---------SHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 984 A~ly~~lGdyeeALey~~kALeL~~ki~G~---------dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G 1054 (1888)
..+.....+.++|++++.+........... ..-....+...++.+|...++.++|..+++++-.......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 345566788999999988765443332221 11234566778899999999999999999999888877655
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
.+....+..|...+..|...++|..+..+.-.++..+
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~ 199 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTL 199 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 5555677777778888889999988776665555443
No 310
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=71.96 E-value=4.9 Score=38.49 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=51.3
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
+-++|.|++.......+..-++++|.|+++.|..... .......|.+ +|..|+|-..+++. .|++|.|+-
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC-CCGGGCEEEE--TTEECCTTSBSGGGTCCTTCEEEEEC
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC-cChhhEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 3478999998885554443355999999999998654 4556666764 99999997777775 368888874
No 311
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=71.55 E-value=4.6 Score=39.39 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=52.5
Q ss_pred cCeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCc-cccccc---cCceeEEec
Q 000191 22 LPVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDA-VDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~-~ei~~l---k~~~L~lVe 96 (1888)
-+..++|+|+++.. .+...+ +.++|.+|++.|..... ..-....|. ++|..|+|- ..|.+. .|++|.||-
T Consensus 12 ~~~~~~I~Vk~~~~--~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi--~~Gk~L~D~~~tL~~ygI~~gstl~lv~ 86 (94)
T 2kan_A 12 AVRKIHVTVKFPSK--QFTVEVDRTETVSSLKDKIHIVEN-TPIKRMQLY--YSGIELADDYRNLNEYGITEFSEIVVFL 86 (94)
T ss_dssp SSCCEEEEEECSSC--EEEEEECTTCBHHHHHHHHHHHSS-SCTTTEEEE--ETTEEECCTTSBHHHHTCCTTEEEEEEE
T ss_pred CCCCEEEEEEcCCc--EEEEEECCCCcHHHHHHHHHHHHC-cCHHHEEEE--ECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 35679999999876 333445 45999999999999764 345566676 499999887 677764 368888875
Q ss_pred c
Q 000191 97 E 97 (1888)
Q Consensus 97 e 97 (1888)
-
T Consensus 87 r 87 (94)
T 2kan_A 87 K 87 (94)
T ss_dssp C
T ss_pred e
Confidence 3
No 312
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=71.51 E-value=5.5 Score=42.12 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=54.3
Q ss_pred cCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 22 LPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+|..++|+|+++......+..-++++|.||++.|..... .+-....|.+ +|..|+|...+.+.. |++|+||-
T Consensus 78 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-ip~~~q~L~~--~G~~L~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 78 SDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG-VQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC-CCHHHEEEEE--CCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 356688888888766555544466999999999998654 4456677775 999999988888754 78998873
No 313
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=69.99 E-value=28 Score=47.42 Aligned_cols=105 Identities=10% Similarity=-0.023 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000191 932 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTC 1011 (1888)
Q Consensus 932 pe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~ 1011 (1888)
...-..|+.|-..|.+.|+.++|..++.+...+..+-+ .| ...+|+-|-..|...|++++|+++|.+....
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----- 194 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDA----- 194 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----
Confidence 34456788999999999999999999987665543322 22 2468899999999999999999999887642
Q ss_pred CCCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Q 000191 1012 GPSHPNTAATYINVAMMEEGLGN-VHVALRYLHKALK 1047 (1888)
Q Consensus 1012 G~dhP~~a~a~~NLA~iy~~lG~-yeeAle~LekALe 1047 (1888)
| -.|+. .+|+.|-.++.+.|+ .++|.++|++..+
T Consensus 195 G-~~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 195 G-LTPDL-LSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp T-CCCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred C-CCCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 2 24554 456666667888887 4788888876554
No 314
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=69.87 E-value=1.6e+02 Score=33.65 Aligned_cols=183 Identities=15% Similarity=0.136 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HH-Hh-
Q 000191 894 RQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI---NE-RE- 968 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I---~E-r~- 968 (1888)
..+..+|+..-+.++|++...+..+.... +. .....=.+.|+.+|-. .+...+.+..+ .+ +.
T Consensus 9 e~~v~~AklaeqaeRyddM~~~mk~v~~~-----~~--eLs~EERnLLSvaYKN------vig~rR~swRiissieqke~ 75 (236)
T 3iqu_A 9 ASLIQKAKLAEQAERYEDMAAFMKGAVEK-----GE--ELSCEERNLLSVAYKN------VVGGQRAAWRVLSSIEQKSN 75 (236)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----CC--CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CC--cCCHHHHHHHHHHHHh------hcccchHHHHHHHHHHHHHh
Confidence 45667788899999999999998887654 11 1222334555555432 22222222222 11 11
Q ss_pred -cCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CChhH-HHHHHHHHHHHH-----HCCC----
Q 000191 969 -LGL-DHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGP--SHPNT-AATYINVAMMEE-----GLGN---- 1034 (1888)
Q Consensus 969 -lG~-Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~--dhP~~-a~a~~NLA~iy~-----~lG~---- 1034 (1888)
.|. .+...+..|..- + -.+=...+...+.+....+-+ ..+.. +..+-..|..|. ..|+
T Consensus 76 ~~~~~~~~~~i~~yr~k--i------e~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~ 147 (236)
T 3iqu_A 76 EEGSEEKGPEVREYREK--V------ETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKR 147 (236)
T ss_dssp STTCCCCCSHHHHHHHH--H------HHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHH
T ss_pred hcCCHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHH
Confidence 121 222222222110 0 011222344444444332111 11111 111222344333 2333
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHhcCC
Q 000191 1035 -VHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQILRAKLGP 1097 (1888)
Q Consensus 1035 -yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~-~lGdydeAle~lqkALeI~kk~LG~ 1097 (1888)
.+.|...|++|.++....+.+.||.......|.+..|+ -+++.++|....++|++-....+..
T Consensus 148 ~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~eld~ 212 (236)
T 3iqu_A 148 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHT 212 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 46789999999999988889999988888888887766 4699999999999998766655543
No 315
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=69.85 E-value=26 Score=38.31 Aligned_cols=100 Identities=9% Similarity=-0.001 Sum_probs=61.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000191 946 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINV 1025 (1888)
Q Consensus 946 ~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NL 1025 (1888)
...|+++.|.+..++. +....+..||......|+++-|.++|+++-.+. .+
T Consensus 16 L~lg~l~~A~e~a~~l-------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~----------------~L 66 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------------NDSITWERLIQEALAQGNASLAEMIYQTQHSFD----------------KL 66 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH----------------HH
T ss_pred HhcCCHHHHHHHHHHh-------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH----------------HH
Confidence 4678888887765432 234568889999999999999999998875432 24
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000191 1026 AMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTT 1087 (1888)
Q Consensus 1026 A~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkA 1087 (1888)
..+|.-.|+.+.-.... ++.... ... ...-.++..+|+++++++.|.++
T Consensus 67 ~~Ly~~tg~~e~L~kla----~iA~~~---g~~------n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 67 SFLYLVTGDVNKLSKMQ----NIAQTR---EDF------GSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTCHHHHHHHH----HHHHHT---TCH------HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHH----HHHHHC---ccH------HHHHHHHHHcCCHHHHHHHHHHC
Confidence 45555566654332222 222111 111 11123556778888888877654
No 316
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=69.67 E-value=4.1 Score=41.11 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=52.1
Q ss_pred CeEEEEEEEcCCCC---------ceEEEccC-hhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cC
Q 000191 23 PVVLDITVNLPDDT---------RVILKGIS-TDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KP 89 (1888)
Q Consensus 23 ~~~~~itv~lP~~~---------~~~~~~is-~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~ 89 (1888)
|..+.|+|+.|... +.+...++ +++|.+|++.|..... ..-....|.+ +|..|+|-..|++. .|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrL~~--~Gk~L~D~~tL~~y~i~~g 99 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG-MPAGKQKLQY--EGIFIKDSNSLAYYNMASG 99 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS-CCTTTEEEEE--TTEEECTTSBHHHHTCCSS
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC-CChHHEEEEE--CCEECCCCCCHHHCCCCCC
Confidence 56899999999732 34444564 4999999999998754 4445566764 89999987777764 37
Q ss_pred ceeEEec
Q 000191 90 CVLSLTE 96 (1888)
Q Consensus 90 ~~L~lVe 96 (1888)
++|.||-
T Consensus 100 ~~i~lv~ 106 (115)
T 1we7_A 100 AVIHLAL 106 (115)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 8888873
No 317
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=69.10 E-value=1.6e+02 Score=33.41 Aligned_cols=178 Identities=8% Similarity=-0.041 Sum_probs=101.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---HHHhcCCCCh
Q 000191 898 ESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI---NERELGLDHP 974 (1888)
Q Consensus 898 elG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I---~Er~lG~Dhp 974 (1888)
.+|..+-+.++|++...+..+....+... +. .....=.+.|+.+|-. .+...+.+..+ .++-. ..+.
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~-~~--eLt~EERnLLSvAYKN------vig~rR~swRiissiEqke-k~~~ 80 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFE-NS--EFDDEERHLLTLCIKH------KISDYRTMTSQVLQEQTKQ-LNND 80 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TC--CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHS-CSCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcc-CC--CCCHHHHHHHHHHHHH------hhcccHHHHHHHHHHHHHH-cCCH
Confidence 56788889999999999999887731111 11 1222334455555422 22222222222 22211 1111
Q ss_pred hhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHH
Q 000191 975 DTMKSYGDLAVFYYRLQHT-ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEE-----GLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 975 ~ta~ay~nLA~ly~~lGdy-eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~-----~lG~yeeAle~LekALei 1048 (1888)
. ...+..-| ..+. .+=...+...+.+....+-+..-.....+-..|..|. ..|+.+.|...|+.|.++
T Consensus 81 ~----~~~~i~~y--r~kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~i 154 (227)
T 2o8p_A 81 E----LVKICSEY--VFSLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTL 154 (227)
T ss_dssp H----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHH--HHHHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHH
Confidence 1 11111111 1112 2223355666666665544432111222223343333 456689999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHH
Q 000191 1049 NQRLLGPDHIQTAASYHAIAIALS-LMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1049 ~ek~~G~d~~~tA~al~nLA~ay~-~lGdydeAle~lqkALeI~ 1091 (1888)
....+.+.||.......|.+..|+ -+++.++|....++|+.+.
T Consensus 155 A~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 155 LCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 988778888877777777776665 5789999999999998865
No 318
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.80 E-value=45 Score=46.22 Aligned_cols=102 Identities=12% Similarity=-0.005 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHH-------------HHhc--CCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000191 896 LLESSKTALDKGKLEDAVTYGTKALAKL-------------VAVC--GPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK 960 (1888)
Q Consensus 896 LlelG~~~l~qGd~dEAie~~eeAL~l~-------------eqi~--G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eK 960 (1888)
.|-+|++++..|++++|..+|++|-.-. ..+. ..........|..+..++...+.++.++.+.+.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3778999999999999999998873210 0000 011122345678888999999999999999999
Q ss_pred HHHHHHHhcCCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 000191 961 ALDINERELGLDHPDT-MKSYGDLAVFYYRLQHTELALKYVK 1001 (1888)
Q Consensus 961 AL~I~Er~lG~Dhp~t-a~ay~nLA~ly~~lGdyeeALey~~ 1001 (1888)
|+... +.+.+.. ...|.++=..+...|+|++|...+.
T Consensus 925 Ai~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 925 ADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 98753 3344433 3467778888889999999976553
No 319
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=68.76 E-value=5.5 Score=37.98 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=52.5
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCc-cCCccccccc---cCceeEEeccC
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPR-LKDAVDVAAL---KPCVLSLTEED 98 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~-L~d~~ei~~l---k~~~L~lVeep 98 (1888)
-++|+|++.......+..-++++|.||++.|..... ..-....|.+ +|.. |+|-..+++. .|++|.||--|
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi~--~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH-IPVSKQTLIV--DGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT-CCGGGEEEEE--TTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC-cChHHEEEEE--CCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 478999988875555443355999999999999765 3445566764 9999 9997777764 37899887544
No 320
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=68.68 E-value=35 Score=38.67 Aligned_cols=69 Identities=7% Similarity=-0.011 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYLL 1007 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~-lGdyeeALey~~kALeL~ 1007 (1888)
.|+.||. +..|+.+.|...|++|..++...+.+.||-......|.+.+|+. +++.++|..+.++|+.+.
T Consensus 129 YyRYlAE--~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 129 ISRYKLE--FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHH--TTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3444443 23567899999999999999987888899888888888887765 588999999999998764
No 321
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=67.71 E-value=49 Score=40.48 Aligned_cols=74 Identities=16% Similarity=0.042 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 976 TMKSYGDLAVFYYRLQHT--ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 976 ta~ay~nLA~ly~~lGdy--eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
...++.+||.+....-.. ..++.+|++|+...+..|+..| ..-|..+|-.+.+.++|.+|++++-+|-.....+
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~Y 336 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQDY 336 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhhc
Confidence 446677777766544322 3478899999999999988777 3446668999999999999999999998877554
No 322
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=67.33 E-value=38 Score=40.55 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 935 A~ay~~LA~ly~~lG--dyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
..++.+||.+--..- ....++.+|.+|+...++.++..| ..-|..+|-+|++.+++.+|++++-.|-...+.
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 456666666544322 222389999999999999887666 346778899999999999999999888776543
No 323
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=67.33 E-value=7 Score=43.19 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=51.8
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|++.......+..-++++|.+|++.|..... ..-....|.+ +|..|+|...|++.. |++|.||-
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g-Ip~~~QrLi~--~Gk~L~D~~tL~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 176 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGCCEEE--TTEECCTTCBGGGGTCCTTCEEEECC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC-CCHHHEEEEE--CCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 79999998766555544466999999999998754 3445566765 999999988787753 68998873
No 324
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=66.64 E-value=93 Score=35.43 Aligned_cols=58 Identities=21% Similarity=0.130 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Q 000191 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQR 1051 (1888)
Q Consensus 994 eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~ek 1051 (1888)
+.|+..|+.|+++....+.+.||..+....|.+..|.. +++.++|....++|++-...
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~ 205 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA 205 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999888899999998888899888776 79999999998888875543
No 325
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=66.22 E-value=6.1 Score=42.79 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=51.5
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
++|+|++..+....+..-++++|.|+++.|..... ..-....|.+ +|..|+|-..+.+.. |++|.||-
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi~--~Gk~L~D~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC-CCTTTEEEEE--TTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC-cCHHHEEEEE--CCccccCcCcHHHcCCCCCCEEEEEE
Confidence 47999999876555544466999999999998755 3344556664 999999988888753 79999874
No 326
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=66.19 E-value=9.5 Score=39.42 Aligned_cols=70 Identities=21% Similarity=0.206 Sum_probs=49.3
Q ss_pred CeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhc-----CCcc--cccccccccccCCCccCCcccccccc---C--
Q 000191 23 PVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVN-----TETC--SITNFSLSHEIRGPRLKDAVDVAALK---P-- 89 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~-----~~Tc--~~T~fsL~~~~~G~~L~d~~ei~~lk---~-- 89 (1888)
+..++|+|++... +.+...+ ++|+|.+|++.|.+. -+-. .-...-|-+ .|..|+|-..|++.+ +
T Consensus 15 ~~~m~I~vktl~G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy--~GK~LeD~~TL~~y~I~~~~~ 91 (125)
T 2gow_A 15 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY--QGRFLHGNVTLGALKLPFGKT 91 (125)
T ss_dssp TTCEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES--SSSEEESSCBTGGGCCCTTSE
T ss_pred CCeEEEEEEeCCC-CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE--CCcCCCCCCcHHHcCCCCCCc
Confidence 4469999999988 4444455 569999999999983 1122 244555664 999999988888753 3
Q ss_pred ceeEEe
Q 000191 90 CVLSLT 95 (1888)
Q Consensus 90 ~~L~lV 95 (1888)
.+|.||
T Consensus 92 ~tlhlv 97 (125)
T 2gow_A 92 TVMHLV 97 (125)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 456665
No 327
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=66.12 E-value=7 Score=38.53 Aligned_cols=70 Identities=11% Similarity=0.063 Sum_probs=50.5
Q ss_pred eEEEEEEEcCCCC---ceEEEccC-hhhHHHHHHHhhhcCCcccccccccccccCCCccCCc-cccccc---cCceeEEe
Q 000191 24 VVLDITVNLPDDT---RVILKGIS-TDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDA-VDVAAL---KPCVLSLT 95 (1888)
Q Consensus 24 ~~~~itv~lP~~~---~~~~~~is-~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~-~ei~~l---k~~~L~lV 95 (1888)
..++|+|+++... +.+.+.++ .++|.||++.|..... +.-....|.+ +|..|+|- ..+.+. .|++|.|+
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g-ip~~~qrL~~--~gk~L~D~~~tL~~ygI~~g~~l~l~ 82 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG-VPAEEAQIVY--MEQLLTDDHCSLGSYGLKDGDMVVLL 82 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC-CCGGGBCEEE--TTEEECCSSSBHHHHTCCTTEEEEEC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC-cChHHeEEEE--CCEECCCCcccHHHCCCCCCCEEEEE
Confidence 3489999998654 55555564 4999999999998765 4455666764 99999775 456653 37888887
Q ss_pred c
Q 000191 96 E 96 (1888)
Q Consensus 96 e 96 (1888)
.
T Consensus 83 ~ 83 (102)
T 1v5o_A 83 Q 83 (102)
T ss_dssp B
T ss_pred E
Confidence 4
No 328
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=65.90 E-value=5.5 Score=39.51 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=50.3
Q ss_pred CeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
+..++|+|+..... . ...+ ..++|.||++.|..... +......|. ++|..|+|-..|.++ .|++|.|+-
T Consensus 15 ~~~m~I~Vk~~~g~-~-~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrLi--~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-E-DFSVTDTCTIQQLKEEISQRFK-AHPDQLVLI--FAGKILKDPDSLAQCGVRDGLTVHLVI 87 (106)
T ss_dssp SSEEEEEEECSSCE-E-EEEEETTCCHHHHHHHHHHHHT-CCTTTEEEE--ETTEECCTTSCHHHHTCCTTEEEEEEE
T ss_pred CceEEEEEEeCCCc-E-EEEECCCCcHHHHHHHHHHHHC-cChhhEEEE--ECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 45799999998763 3 3445 45999999999998654 344555666 499999997767764 368888874
No 329
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=65.56 E-value=1.2e+02 Score=34.73 Aligned_cols=57 Identities=16% Similarity=0.058 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Q 000191 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 994 eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~e 1050 (1888)
+.|+..|+.|.++....+.+.||..+....|.+..|.. +++.++|....++|++-..
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai 205 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI 205 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 67899999999999888899999998888899888776 7899999999888877653
No 330
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=65.55 E-value=35 Score=46.55 Aligned_cols=105 Identities=10% Similarity=-0.073 Sum_probs=76.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000191 973 HPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 973 hp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~ 1052 (1888)
......+|+.|-..|...|+.++|..+|.+.......-+ .|+ ..+|+.|-..|.+.|++++|+++|++..+. -
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~---~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~---G 195 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK---LLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDA---G 195 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT---TCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---T
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC---CCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---C
Confidence 344567888999999999999999999987654433322 244 357888889999999999999999876542 1
Q ss_pred cCCCcHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHH
Q 000191 1053 LGPDHIQTAASYHAIAIALSLMEAY-PLSVQHEQTTL 1088 (1888)
Q Consensus 1053 ~G~d~~~tA~al~nLA~ay~~lGdy-deAle~lqkAL 1088 (1888)
+.+ ...+|..|-..+++.|+. ++|..++++..
T Consensus 196 ~~P----DvvTYntLI~glcK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 196 LTP----DLLSYAAALQCMGRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp CCC----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCC----cHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 122 234566666688888885 67888877644
No 331
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=65.28 E-value=9.3 Score=38.64 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=58.7
Q ss_pred ccccCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 19 EKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 19 e~~~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
++--+..|+|.|+..+...+.++.-.++++..|-+...+... +....+.|.+ +|.+|++.....++. |.+|.++
T Consensus 20 ~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g-i~~~~~rfiF--dG~~L~~~~Tp~dl~mEDgD~Idv~ 96 (110)
T 2k8h_A 20 CKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG-ISRNSVRFLF--DGTPIDETKTPEELGMEDDDVIDAM 96 (110)
T ss_dssp CCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT-CCSSSCEEES--SSCBCCSSSHHHHHHCSSEEEEEEE
T ss_pred CCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC-CCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 333567899999999888777776677888888888888755 4555666764 999999977666653 6888887
Q ss_pred ccCC
Q 000191 96 EEDF 99 (1888)
Q Consensus 96 eepY 99 (1888)
.+..
T Consensus 97 ~~q~ 100 (110)
T 2k8h_A 97 VEQT 100 (110)
T ss_dssp CCCC
T ss_pred Eccc
Confidence 6643
No 332
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=65.04 E-value=10 Score=38.73 Aligned_cols=70 Identities=21% Similarity=0.206 Sum_probs=49.4
Q ss_pred CeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhc-----CCcc--cccccccccccCCCccCCcccccccc---C--
Q 000191 23 PVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVN-----TETC--SITNFSLSHEIRGPRLKDAVDVAALK---P-- 89 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~-----~~Tc--~~T~fsL~~~~~G~~L~d~~ei~~lk---~-- 89 (1888)
+..++|+|++... +.+...+ ++|+|.+|++.|.+. -+-. .-...-|-| .|..|+|-..|++.+ +
T Consensus 14 ~~~m~I~vKtl~G-~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy--~GK~LeD~~TL~~y~I~~~~~ 90 (116)
T 1wgh_A 14 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY--QGRFLHGNVTLGALKLPFGKT 90 (116)
T ss_dssp SSSEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE--TTEEECSSCBTTTTTCCSSCE
T ss_pred CCeEEEEEEeCCC-CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE--CCcCCCCCCcHHHcCCCCCCc
Confidence 3469999999887 4444455 669999999999983 1222 334455664 999999988888754 4
Q ss_pred ceeEEe
Q 000191 90 CVLSLT 95 (1888)
Q Consensus 90 ~~L~lV 95 (1888)
++|+||
T Consensus 91 ~tlhLv 96 (116)
T 1wgh_A 91 TVMHLV 96 (116)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 567776
No 333
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=64.95 E-value=43 Score=40.82 Aligned_cols=72 Identities=15% Similarity=0.023 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTGDF--NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGdy--eeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
..++.+||.+--..--. ..++.+|.+|+...++.++..| ..-|..+|-+|++.+++.+|+.++-.|-...+.
T Consensus 277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 34566666554432111 2488999999999999887666 346778899999999999999998888776543
No 334
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=64.03 E-value=1.3e+02 Score=36.57 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q 000191 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQIL 1091 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~ 1091 (1888)
..+.+++..|..+...+++.+|+.+++.|.+.+
T Consensus 251 ~~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l 283 (376)
T 3r9m_A 251 YTAYAYCYHGETLLASDKCGEAIRSLQEAEKLY 283 (376)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 345666667777777788888888887776554
No 335
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=63.85 E-value=8.1 Score=39.02 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=51.8
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEecc
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTEE 97 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVee 97 (1888)
-|+|.|++.......+..-++++|.||++.|..... ..-....|.+ +|..|+|-..|.+. .|++|.|+-.
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrLi~--~Gk~L~D~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPDQQRLIW--AGKQLEDGRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC-cChHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 489999999885554443355999999999998654 3445556664 89999997777775 3688888753
No 336
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=63.60 E-value=15 Score=34.87 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=47.2
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccC--C-cccccc--ccCceeEEecc
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLK--D-AVDVAA--LKPCVLSLTEE 97 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~--d-~~ei~~--lk~~~L~lVee 97 (1888)
.+..|.|.+|++..++..--++|+|+||+.++..+. .+-..|.|..-+=...|. | ...|.+ |.+...-+||+
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~~--~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASKG--FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHTT--CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHcC--CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 467899999999988777778899999999998743 345677776322234453 2 223444 34544444443
No 337
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=61.60 E-value=8.2 Score=41.46 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=52.0
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
+..++|+|++.......+..-++++|.+|++.|..... ..-....|.+ +|..|+|...+.+.. |++|.|+-
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g-ip~~~QrL~~--~g~~L~d~~tL~~~~i~~~~~l~l~~ 91 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 91 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-cChHHEEEEE--CCccccccCCHhHcCCcccceeeeee
Confidence 45689999988765544443456999999999998654 3444556664 999999988888753 68888874
No 338
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=65.62 E-value=1.7 Score=40.07 Aligned_cols=67 Identities=9% Similarity=0.193 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEe
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lV 95 (1888)
++|+|+++......+..-++++|.|+++.|..... .+.....|.+ +|..|+|-..+++. .|++|.||
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-i~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~ 70 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG-VPADQLRVIF--AGKELPNHLTVQNCDLEQQSIVHIV 70 (76)
Confidence 46889988765444333355999999999998654 4455666764 99999987777764 26777665
No 339
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=61.33 E-value=1.6e+02 Score=36.12 Aligned_cols=72 Identities=15% Similarity=0.026 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000191 935 AGAYSLLAVVLYHTGD--FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL 1009 (1888)
Q Consensus 935 A~ay~~LA~ly~~lGd--yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k 1009 (1888)
..++.+||.+-...-. ...++.+|++|+...++.++..| ...|..+|-++++.++|.+|++++-.|-.....
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 4456666655443221 23477899999999999887666 456888999999999999999999998776544
No 340
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=60.99 E-value=1.4e+02 Score=34.63 Aligned_cols=57 Identities=21% Similarity=0.136 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Q 000191 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 994 eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~e 1050 (1888)
+.|+..|++|.++....+.+.||..+....|.+..|.. +++.++|....++|++-..
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai 230 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 230 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 67899999999999888899999999888999988776 6899999999888877653
No 341
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=60.47 E-value=11 Score=38.59 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=54.2
Q ss_pred cccccccccccccCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc-
Q 000191 10 AKNEKKKKEEKVLPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK- 88 (1888)
Q Consensus 10 ~k~~~~kk~e~~~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk- 88 (1888)
+|-.-++.+.|..+..|+|.|+..+...+.++.-.++.+..|-....++.. +.+..+.|.+ +|.+|++.....+|.
T Consensus 25 ~~~~~~~~~~k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G-l~~~~irFlF--DG~rI~~~~TP~dL~M 101 (115)
T 3kyd_D 25 AKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG-VPMNSLRFLF--EGQRIADNHTPKELGM 101 (115)
T ss_dssp --------------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT-CCTTSEEEEE--TTEECCTTCCTTTTTC
T ss_pred ccCccccccCCCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC-CChhhEEEEE--CCeECCCCCCHHHcCC
Confidence 333333334455578999999999988877776666777777777777655 5667777775 999999977777764
Q ss_pred --CceeEEecc
Q 000191 89 --PCVLSLTEE 97 (1888)
Q Consensus 89 --~~~L~lVee 97 (1888)
|.+|.++.+
T Consensus 102 EDgD~IdV~~~ 112 (115)
T 3kyd_D 102 EEEDVIEVYQE 112 (115)
T ss_dssp CTTCEEEEEEC
T ss_pred CCCCEEEEEee
Confidence 677777654
No 342
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=59.93 E-value=7.2 Score=38.84 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=50.3
Q ss_pred CeEEEEEEEcCCC---CceEEEc-------c-C-hhhHHHHHHHhhhcCC-cccccc-cccccccCCCccCCccccccc-
Q 000191 23 PVVLDITVNLPDD---TRVILKG-------I-S-TDRIIDVRRLLSVNTE-TCSITN-FSLSHEIRGPRLKDAVDVAAL- 87 (1888)
Q Consensus 23 ~~~~~itv~lP~~---~~~~~~~-------i-s-~d~v~dvrq~L~~~~~-Tc~~T~-fsL~~~~~G~~L~d~~ei~~l- 87 (1888)
...++|+|++... ....+.. + . .++|.+|++.|..... -..-.. ..|.+ +|..|+|-..|.++
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~--~Gk~L~D~~tL~~y~ 87 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY--CGRKLKDDQTLDFYG 87 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE--TTEECCTTCBHHHHT
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE--CCeECCCCCcHHHcC
Confidence 3458899999887 3333221 2 2 3899999999998651 233344 55664 99999998777764
Q ss_pred --cCceeEEecc
Q 000191 88 --KPCVLSLTEE 97 (1888)
Q Consensus 88 --k~~~L~lVee 97 (1888)
.|++|.||--
T Consensus 88 i~~g~~i~lv~~ 99 (107)
T 1x1m_A 88 IQPGSTVHVLRK 99 (107)
T ss_dssp CCTTCEEEEEES
T ss_pred CCCCCEEEEEeC
Confidence 3688888753
No 343
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=59.70 E-value=1.1e+02 Score=35.27 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Q 000191 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 994 eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~e 1050 (1888)
+.|+..|+.|+++. ..+.+.||..+....|.+..|.. +++.++|....++|++-..
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 68899999999999 77899999998888899988776 7999999999998887653
No 344
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=58.37 E-value=2.1 Score=47.35 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccccCceeEEe
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALKPCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk~~~L~lV 95 (1888)
++|+|+++....+.+..-++|+|.+|.+.|.+... ..-....|.+ +|..|+|-..|+ .+++|+||
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG-IP~~qQRLIf--~GK~LeD~~TLs--~~STLhLv 65 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG-FEIDMMTLVN--NGFIAPNTELVT--DDVTYYLS 65 (189)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC-cChhHEEEEe--cCeECCCCCccc--CCCEEEEE
Confidence 47899998765444443456999999999998653 4455666765 999999965555 44555444
No 345
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=58.28 E-value=1.6e+02 Score=35.47 Aligned_cols=36 Identities=14% Similarity=0.030 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAK 1094 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~ 1094 (1888)
..+.+++..|......+++.+|+.+++.|.+.+++.
T Consensus 250 ~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 285 (363)
T 3rau_A 250 FAAVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEA 285 (363)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 456677777888888899999999999988877654
No 346
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=58.24 E-value=1.3e+02 Score=36.37 Aligned_cols=41 Identities=10% Similarity=-0.078 Sum_probs=29.6
Q ss_pred hhcccHHHHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHHHHHH
Q 000191 885 QAACSSADGRQLLESSKTALDKG---------KLEDAVTYGTKALAKLVA 925 (1888)
Q Consensus 885 ~~~~~s~~A~~LlelG~~~l~qG---------d~dEAie~~eeAL~l~eq 925 (1888)
........+..|+++|..+.+.| .+..|..+|++|-..+.-
T Consensus 109 ~~sl~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~ 158 (363)
T 3rau_A 109 HEDIKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAY 158 (363)
T ss_dssp ESCHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 34445666888999988876553 367789999999887653
No 347
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=57.66 E-value=14 Score=36.23 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=55.6
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEecc
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
..++|.|+..+...+.++.-.++++..|-+...+... +....+.|.+ +|.+|++.....++. |.+|.+|-+
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g-i~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG-LSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC-CCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 4689999999887777776677888888888888766 4556777775 999999987777764 688888764
No 348
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=57.55 E-value=28 Score=34.75 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=54.7
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEecc
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
+..|+|.|+..+...+.++.-.++++..|-....+.... ....+.|.+ +|.+|++.....++. |.+|.|+-+
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi-~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGL-SMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTC-CTTTSCEES--SSSBCCTTSCTTTTTCCTTEEEEECCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCC-CcceEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 457999999988776767666778888888888876553 556666764 999999987777764 688888754
No 349
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=56.13 E-value=11 Score=35.81 Aligned_cols=71 Identities=14% Similarity=0.202 Sum_probs=46.6
Q ss_pred EEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccC---Cccccccc---cCceeEEeccC
Q 000191 26 LDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLK---DAVDVAAL---KPCVLSLTEED 98 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~---d~~ei~~l---k~~~L~lVeep 98 (1888)
+.|.|+++.+.. +...+ +.++|.||++.|..... ..-..+.|.+-..|..|+ |-..|.++ .|++|.|++..
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~g-i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITG-IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTC-CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhC-CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 368999999854 34435 45999999999998754 233455565422345553 45566665 37999888763
No 350
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.10 E-value=16 Score=35.28 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=46.4
Q ss_pred EEEEEEEcCCCCceE-EE-cc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEE
Q 000191 25 VLDITVNLPDDTRVI-LK-GI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSL 94 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~-~~-~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~l 94 (1888)
.++|+|++......+ .. .+ ++++|.||++.|...-+-.+-..-.|.+..+|..|+|-..|.+.+ |++|.+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 589999999765543 23 45 559999999999994222333333454434799998877777653 566554
No 351
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.92 E-value=66 Score=37.43 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=45.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000191 901 KTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 964 (1888)
Q Consensus 901 ~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I 964 (1888)
..++..|.+++|+......++. +|..+.....|-.+++..|+++.|...++-+..+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456789999999999888765 6777888889999999999999999877665444
No 352
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.89 E-value=15 Score=35.18 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=50.6
Q ss_pred eEEEEEEEcCCCCceEEEccC------hhhHHHHHHHhhhcCCcccccccccccccCCCccCC-ccccccc---cCceeE
Q 000191 24 VVLDITVNLPDDTRVILKGIS------TDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKD-AVDVAAL---KPCVLS 93 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is------~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d-~~ei~~l---k~~~L~ 93 (1888)
..+.|+|+...... .+.++ .++|.|+++.|..... +.-..-.|.+ +|..|+| ...+.++ .|++|.
T Consensus 6 ~~~~v~Vk~~~~~~--~i~v~~~~~~~~~TV~~LK~~i~~~~g-ip~~~qrL~~--~Gk~L~D~~~~L~~~~i~~g~~i~ 80 (92)
T 1wxv_A 6 SGLTVTVTHSNEKH--DLHVTSQQGSSEPVVQDLAQVVEEVIG-VPQSFQKLIF--KGKSLKEMETPLSALGIQDGCRVM 80 (92)
T ss_dssp SSEEEEEECSSSEE--EEEECCCSSSSSCBHHHHHHHHHHHTC-CCTTTCEEEE--TTEEECCSSSBHHHHTCCSSEEEE
T ss_pred CeEEEEEEECCEEE--EEEECCCcCcccCcHHHHHHHHHHHHC-cCHHHEEEEE--CCeecCCCcccHHHCCCCCCCEEE
Confidence 45899999964333 33443 3899999999998764 4456666764 9999988 4456654 379999
Q ss_pred EeccCCC
Q 000191 94 LTEEDFD 100 (1888)
Q Consensus 94 lVeepYt 100 (1888)
||--+..
T Consensus 81 l~~~~~~ 87 (92)
T 1wxv_A 81 LIGKKNS 87 (92)
T ss_dssp EESCCSC
T ss_pred EEecCCC
Confidence 9875543
No 353
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=53.85 E-value=18 Score=36.06 Aligned_cols=69 Identities=12% Similarity=-0.008 Sum_probs=51.3
Q ss_pred eEEEEEEEcCCC---CceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 24 VVLDITVNLPDD---TRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 24 ~~~~itv~lP~~---~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
.+..|.|.+|.+ .+.+...| ++++|.+|++.|.+... ++-...-|-+ +|..|+|-..|.+.+ |++|.|+
T Consensus 14 g~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g-ip~~qQrLI~--~GKiL~D~~TL~~y~I~~gsti~vl 89 (100)
T 1wju_A 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG-LQENYIKIVI--NKKQLQLGKTLEEQGVAHNVKAMVL 89 (100)
T ss_dssp CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT-CCSTTCEEEE--TTEECCTTSBHHHHTCCSSEEEEEE
T ss_pred ceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC-cCHHHeEEEe--CCeECCCCCcHHHcCCCCCCEEEEE
Confidence 455788999983 34555555 55999999999999765 5666667764 999999987777743 6877444
No 354
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=53.60 E-value=25 Score=36.44 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=49.8
Q ss_pred CeEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhh-----hcCCcccc--cccccccccCCCccCCcccccccc---C--
Q 000191 23 PVVLDITVNLPDDTRVILKGI-STDRIIDVRRLLS-----VNTETCSI--TNFSLSHEIRGPRLKDAVDVAALK---P-- 89 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~-----~~~~Tc~~--T~fsL~~~~~G~~L~d~~ei~~lk---~-- 89 (1888)
...++|+|+|.+...+....+ ++|+|.+|++.|. +.+ --.. ..--|- +.|..|+|-..|++.+ |
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dke-giP~~~~qQrLI--y~GK~LeD~~TLsdy~I~~~~~ 90 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKE-NGPKTVKEVKLI--SAGKVLENSKTVKDYRSPVSNL 90 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCS-SSCCSGGGEEEE--ETTEECCTTSBGGGGSCCTTSC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccc-cCCCChhhEEEE--ECCeECcCCCcHHHcCCCcCCc
Confidence 478999999999987644444 6699999999994 322 1122 233454 4999999988888753 4
Q ss_pred ----ceeEEec
Q 000191 90 ----CVLSLTE 96 (1888)
Q Consensus 90 ----~~L~lVe 96 (1888)
++|.||-
T Consensus 91 ~~~v~tmhlVl 101 (126)
T 1se9_A 91 AGAVTTMHVII 101 (126)
T ss_dssp TTCCEEEEEEE
T ss_pred cCCcEEEEEEe
Confidence 5677763
No 355
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=53.39 E-value=17 Score=39.01 Aligned_cols=68 Identities=18% Similarity=0.201 Sum_probs=48.7
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
-+.|.|++.......+..-++++|.+|++.|..... ..-....|.+ +|..|+|...+.+.. |++|+||
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g-ip~~~q~L~~--~g~~L~D~~tL~~y~i~~g~tl~l~ 166 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLV 166 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGCCEEE--TTEECCTTSBSGGGTCCTTCEEEEC
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhC-CCceeEEEEE--CCccCCCCCcHHHhCCCCCCEEEEE
Confidence 355666665554444433466999999999998754 3456667775 999999987777753 7999886
No 356
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=52.41 E-value=2.5e+02 Score=32.05 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 000191 993 TELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEG-LGNVHVALRYLHKALKCN 1049 (1888)
Q Consensus 993 yeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~-lG~yeeAle~LekALei~ 1049 (1888)
.+.|+..|+.|.++....+.+.||..+....|.+..|.. +++.++|....++|++-.
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~A 206 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEA 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 378899999999999888899999998888899888774 689999999888887654
No 357
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=52.35 E-value=20 Score=34.87 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=55.0
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEecc
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
+..++|.|+..+...+.++.-.++++..|-....+... +....+.|.+ +|.+|++.....++. |.+|.++.+
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g-i~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG-LSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT-CCSTTEEEEE--TTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC-CCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 45689999998887777776677888888888888765 4557777775 999999987777764 677877754
No 358
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=51.38 E-value=16 Score=37.74 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=50.4
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEeccC
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEED 98 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVeep 98 (1888)
++|+|+++......+..-+.++|.|+++.|..... ++-....|.+ +|..|+|-..+.+.. |++|.|+..+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-ip~~~q~L~~--~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC-cChHHeEEEE--CCeECcCcccHHHhccCCCCeeEEEeec
Confidence 37899998765444433355999999999998654 3344556664 899999977777753 6889888653
No 359
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=50.99 E-value=19 Score=37.24 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=50.1
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
-+.|+|++++.....+..-..++|.++++.|..... .......|.+ +|..|+|-..+.+.. |++|.|+-
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC-cChhhEEEEE--CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 467888877764444433355999999999998653 4456677775 999999987777753 78888874
No 360
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=50.97 E-value=24 Score=34.35 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=54.9
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEecc
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
+..++|.|+.++...+.++.-.++++..|-....+... +....+.|.+ +|.+|++.....++. |.+|.++-+
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g-i~~~~~rf~f--dG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG-LSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC-CCccceEEEE--CCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 46799999998887666666677888888888887655 3556666764 999999988777765 678887754
No 361
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.82 E-value=21 Score=34.70 Aligned_cols=70 Identities=6% Similarity=0.022 Sum_probs=49.6
Q ss_pred CeEEEEEEEcCCCCceEEEccC-hhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEeccC
Q 000191 23 PVVLDITVNLPDDTRVILKGIS-TDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTEED 98 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is-~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVeep 98 (1888)
...++|+|++.. +.+.+.++ .++|.||++.|..... +.-..-.|.+ +|..|+|. .|.++ .|++|.||.-+
T Consensus 15 ~~~~~i~Vk~~g--~~~~i~v~~~~TV~~LK~~I~~~tg-ip~~~QrL~~--~Gk~Ldd~-tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 15 KELVDLKIIWNK--TKHDVKVPLDSTGSELKQKIHSITG-LPPAMQKVMY--KGLVPEDK-TLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCCEEEEEEETT--EEEEEEECTTSBHHHHHHHHHHHHC-SCSTTCCCBS--SSBCCSSS-BHHHHCCCTTEEEEECCSS
T ss_pred CceEEEEEEECC--EEEEEEECCCCcHHHHHHHHHHHHC-cCHHHeEEEE--CCeeCCcC-cHHHCCCCCCCEEEEEecc
Confidence 346899999653 34444564 4999999999998765 3344555664 99999775 66664 36899998654
No 362
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=50.66 E-value=17 Score=35.45 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=48.1
Q ss_pred eEEEEEEEcCCCCceE-EEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 24 VVLDITVNLPDDTRVI-LKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~-~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
..++|+|++.. +.+ ...+ ..++|.||++.|..... ..-..-.|.+ +|..|+|- .+++++ |+.|.||.
T Consensus 6 ~~m~i~Vk~~g--~~~~~l~v~~~~TV~~lK~~I~~~tg-ip~~~QkLi~--~Gk~L~D~-tL~~~~I~~g~~i~l~~ 77 (96)
T 1wgg_A 6 SGYSVTVKWGK--EKFEGVELNTDEPPMVFKAQLFALTG-VQPARQKVMV--KGGTLKDD-DWGNIKMKNGMTVLMMG 77 (96)
T ss_dssp CEEEEEEEETT--EEEEEEEEESSSCHHHHHHHHHHHTC-CCTTTSCCEE--TTEECCSS-CCCSCCCCSSCEEECCC
T ss_pred cEEEEEEEECC--EEEEEEEECCCCcHHHHHHHHHHHHC-cCHHHeEEEE--CCcCCCCC-CHHHCCCCCCCEEEEEe
Confidence 35899999743 444 2455 45999999999999765 3445555664 99999997 777752 68888764
No 363
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=50.44 E-value=10 Score=37.43 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=46.7
Q ss_pred EEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEec
Q 000191 25 VLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTE 96 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVe 96 (1888)
.+.|+|+. ..+.....+ ++++|.|+++.|..... ..-...-|. ++|..|+|...+++.. |++|.||-
T Consensus 28 ~i~I~Vk~--~g~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi--~~Gk~L~D~~tL~~~gI~~g~tI~lv~ 98 (101)
T 3m63_B 28 SLNIHIKS--GQDKWEVNVAPESTVLQFKEAINKANG-IPVANQRLI--YSGKILKDDQTVESYHIQDGHSVHLVK 98 (101)
T ss_dssp -CCEEEEC--SSCCCCBCCCTTSBHHHHHHHHHHHHS-CCSTTCCEE--ETTEECCTTSBTTTTTCCTTEEEEECC
T ss_pred EEEEEEEE--CCEEEEEEeCCCCCHHHHHHHHHHHHC-cChHHEEEE--ECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 46788886 333333455 45999999999988654 334445565 4999999988888753 78998874
No 364
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=48.63 E-value=1.6e+02 Score=35.65 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q 000191 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILR 1092 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~k 1092 (1888)
.+.+++..|..+...+++.+|+.+++.|.+.++
T Consensus 274 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~ 306 (380)
T 3c3r_A 274 QANAEYHQSILAKQQKKFGEEIARLQHAAELIK 306 (380)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 345556667777777888888888887775543
No 365
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=48.53 E-value=74 Score=36.92 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 000191 951 FNQATIYQQKALDINEREL--GLDHPDTMKSYGDLAVFYYR-LQHTELALKYVKRALYL 1006 (1888)
Q Consensus 951 yeeAl~~~eKAL~I~Er~l--G~Dhp~ta~ay~nLA~ly~~-lGdyeeALey~~kALeL 1006 (1888)
.+.|...|++|..+++..+ .+.||-......|.+.+|+. +++.++|..+.++|++-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3678899999999998888 88899888888889988885 69999999999999875
No 366
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=47.92 E-value=64 Score=31.11 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=35.8
Q ss_pred hhhhcccHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 883 HKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 927 (1888)
Q Consensus 883 vK~~~~~s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~ 927 (1888)
+.+..+.+..|..+...|..+-..|+|++|+.+|.+|++.+....
T Consensus 6 ~~~~~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 6 HHHMDPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999999999999999999999999876654
No 367
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=46.97 E-value=24 Score=41.86 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=51.3
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEec
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTE 96 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVe 96 (1888)
+..++|+|++.......+..-..++|.||++.|..... ..-..-.|.+ +|..|+|-..|++. .|++|.||-
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G-Ip~~~QRLi~--~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC-CCGGGCEEEE--TTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-cChHHEEEEe--CCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 45679999998765443333345999999999998654 3444556664 89999997777775 368888874
No 368
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=46.75 E-value=28 Score=34.97 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=53.0
Q ss_pred cCeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEecc
Q 000191 22 LPVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
-+..++|.|+. +...+.++.-.++++..|-....+... +....+.|.+ +|.+|++.....++. |.+|.++-+
T Consensus 28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g-i~~~~~rF~F--dG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG-KEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT-CCGGGEEEEE--TTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC-CCcccEEEEE--CCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 45678999998 666565665566888888788777665 4566777764 999999987777764 678887755
No 369
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=46.68 E-value=4.1 Score=41.94 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
++|+|++.++....+..-++++|.||++.|..... .+-....|.+ +|..|+|...+.++. |++|.||
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~QrLi~--~Gk~L~D~~tL~~~~I~~gsti~l~ 70 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG-IPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLV 70 (128)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC-cChHHEEEEE--CCEECCCCCchhhhccCCCCEEEEE
Confidence 47889988765544433356999999999988643 3334556664 999999987777753 5666665
No 370
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=45.15 E-value=26 Score=36.85 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=49.9
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCccccccccccccc-CCCccCCcccccccc---CceeEEecc
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEI-RGPRLKDAVDVAALK---PCVLSLTEE 97 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~-~G~~L~d~~ei~~lk---~~~L~lVee 97 (1888)
++|+|++.......+..-++++|.||++.|..... ++-..-.|.+ + +|..|+|...+++.. |++|.||--
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g-ip~~~QrL~~-~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG-VHAFQQRLAV-HPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC-CCGGGEEEEE-ETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC-CCHHHEEEEE-cCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 68999988765555433456999999999998654 3333344442 3 699999988888753 788988865
No 371
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=44.94 E-value=1.8e+02 Score=33.92 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=77.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000191 1028 MEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGPDDLRTQDAAA 1107 (1888)
Q Consensus 1028 iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~dh~~tl~a~~ 1107 (1888)
-+.+.|..++|+..++..++. .|..+.....|.++|+-.|+++.|...++.+.++ .++.......+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l-----~p~~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-----FPEYLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CGGGHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhhHHHHHHH
Confidence 345778999999988887764 3556677778899999999999999998876644 344433332222
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhhhcCCccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1108 WLEYFESKAFEQQEAARNGTRKPDASIASKGHLSVSDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1108 ~La~L~qka~e~AeAl~~~~~~~~~~~as~~~~svaelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
.+....+ .......+...+. .... .......+ .-+......|++++|...-.+|.+....+.
T Consensus 73 ~lI~aE~----~R~~vfaG~~~P~--~~g~-~~~w~~~l-l~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 73 HLVKAAQ----ARKDFAQGAATAK--VLGE-NEELTKSL-VSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHH----HHHHHTTSCCCEE--CCCS-CHHHHHHH-HHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHH----HHHHHHcCCCCCC--CCCC-CHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 2211111 1112222333222 1121 22222222 222333557999999999999999877654
No 372
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=44.10 E-value=1.2e+02 Score=35.27 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH
Q 000191 993 TELALKYVKRALYLLHLTC--GPSHPNTAATYINVAMMEE-GLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 993 yeeALey~~kALeL~~ki~--G~dhP~~a~a~~NLA~iy~-~lG~yeeAle~LekALei 1048 (1888)
.+.|+..|+.|.++....+ .+.||..+....|.+..|. -+++.++|....++|++-
T Consensus 168 ~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 168 IKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3678999999999998778 8899999988899999877 478999999999998876
No 373
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.89 E-value=5e+02 Score=32.25 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--c-CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINERE--L-GLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYL-LH 1008 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er~--l-G~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL-~~ 1008 (1888)
..++|-.+|+++++...|...+ ++++-..-. + .....+.+..++.+|.++...++|.+|.+++..|+.. +-
T Consensus 178 l~n~L~kiYFkl~~~~lckni~-k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIF-KNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHH-HTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 3456678999999999888877 444432100 0 0011245677889999999999999999999999987 54
No 374
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=43.38 E-value=19 Score=34.51 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=48.0
Q ss_pred EEEEEEEcCCCCceEEE-ccC-hhhHHHHHHHhhhcCCcccccccccccc-cCCCccCCccccccc---cCceeEEecc
Q 000191 25 VLDITVNLPDDTRVILK-GIS-TDRIIDVRRLLSVNTETCSITNFSLSHE-IRGPRLKDAVDVAAL---KPCVLSLTEE 97 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~-~is-~d~v~dvrq~L~~~~~Tc~~T~fsL~~~-~~G~~L~d~~ei~~l---k~~~L~lVee 97 (1888)
.++|+|+.. .+.+.. .++ .++|.|+++.|.+.... +-..-.|.-- ++|..|+|-..++++ .|++|.||.-
T Consensus 7 ~m~i~Vk~~--g~~~~i~~v~~~~TV~~lK~~I~~~~gi-p~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 7 GLPIIVKWG--GQEYSVTTLSEDDTVLDLKQFLKTLTGV-LPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp SCCEEEEET--TEEEEECSCCSSSBHHHHHHHHHHHTCC-CTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred eEEEEEEEC--CEEEEEEEeCCCCCHHHHHHHHHHHHCc-CHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 478999973 344445 564 49999999999987653 3344445400 389999997777764 3788988753
No 375
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=43.37 E-value=1.8e+02 Score=35.34 Aligned_cols=34 Identities=12% Similarity=-0.020 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1060 TAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1060 tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
.+.+++..|..+...+++.+|+.+++.|.+.+..
T Consensus 256 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~ 289 (392)
T 1zb1_A 256 KSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLIS 289 (392)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 3445555666666677777777777777665544
No 376
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=43.00 E-value=5.1 Score=42.77 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
++|+|+++......+..-++++|.||++.|...... .-....|.+ +|..|+|...|+++. |++|.||
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gi-p~~~QrLi~--~Gk~L~D~~tL~dygI~~gstL~Lv 70 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGI-PPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp -------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCC-CHHHEEEEE--CCEEccccCcHHHcCCCCCCEEEEE
Confidence 478999987655444333569999999999986543 334455664 999999977777643 5665554
No 377
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=42.74 E-value=33 Score=35.32 Aligned_cols=54 Identities=11% Similarity=0.183 Sum_probs=39.0
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCcc
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRL 78 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L 78 (1888)
.....|.|.||+...++..--.+|+|+|||.+|... ...-..|.|..-+=...|
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~--~~~~~~F~L~t~fPrk~l 94 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK--GYPNERFELLTNFPRRKL 94 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc--CCCCCCeEEecCCCCcCC
Confidence 457899999999987777667889999999999775 223356767532223445
No 378
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=41.50 E-value=1.3e+02 Score=39.65 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q 000191 1059 QTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1059 ~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk 1093 (1888)
..+.+++..|..+...+++.+|+.+++.|...+..
T Consensus 258 ~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~ 292 (704)
T 2xs1_A 258 MQANAEYHQSILAKQQYYFGEEIARLQHAAELIKT 292 (704)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 34566667788888889999999999999877654
No 379
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=41.12 E-value=35 Score=31.43 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=50.2
Q ss_pred EEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 26 LDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
++|.|+..+...+.++.-.++++..|-+...+... +....+.|.+ +|.+|++.....++. |.+|.++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g-i~~~~~rf~f--dG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG-LSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT-CCTTTCEEEE--TTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC-CCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 67888888887777776677888888888887655 4557777775 999999987777764 5666654
No 380
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=40.66 E-value=1.8e+02 Score=35.26 Aligned_cols=35 Identities=9% Similarity=-0.093 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhcccc
Q 000191 1143 SDLLDYINPSHDTKGRNVSTLKRKTYVAKVKGNFY 1177 (1888)
Q Consensus 1143 aelL~~Lg~~y~~qGdyeEAleyyeKALeL~dSi~ 1177 (1888)
+..+++.|..+...+++-+|+.+++.|.+......
T Consensus 257 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 291 (392)
T 1zb1_A 257 SLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSL 291 (392)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 34566677777889999999999999987766544
No 381
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=40.31 E-value=43 Score=33.22 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=47.9
Q ss_pred EEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCC-----------c----cCCcccccccc-
Q 000191 26 LDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGP-----------R----LKDAVDVAALK- 88 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~-----------~----L~d~~ei~~lk- 88 (1888)
+.|.|+.+.....+ ..- .+++|.||++.|..... .+-.+..|.+ .|. . ++|-..|.++.
T Consensus 8 M~irvrs~~G~~~v-~v~~~~~Tv~~LK~kI~~~~g-ip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi 83 (107)
T 1wf9_A 8 TMLRVRSRDGLERV-SVDGPHITVSQLKTLIQDQLQ-IPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSLNL 83 (107)
T ss_dssp EEEEEECSSCEEEE-EECCTTSBHHHHHHHHHHHSC-CCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred EEEEEECCCCCEEE-EECCCCCcHHHHHHHHHHHhC-cCcccCEEEE--CCccccccCccccccccccCCCCCCHHHCCC
Confidence 67999999886533 223 45999999999998765 3334555654 554 3 46766677653
Q ss_pred --CceeEEeccC
Q 000191 89 --PCVLSLTEED 98 (1888)
Q Consensus 89 --~~~L~lVeep 98 (1888)
|+.|.|+..+
T Consensus 84 ~~G~~L~l~~~~ 95 (107)
T 1wf9_A 84 AHGSMVYLAYEG 95 (107)
T ss_dssp CTTCEEECCCSS
T ss_pred CCCCEEEEEeCC
Confidence 7999998763
No 382
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.04 E-value=4.3e+02 Score=29.39 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCC
Q 000191 998 KYVKRALYLLHLT-CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEA 1076 (1888)
Q Consensus 998 ey~~kALeL~~ki-~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGd 1076 (1888)
.++++++..+... .-.+++..+.++...+..+ ..+...++..+|.-... +-.|. ..|..|...|..+...|+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~---~~IG~---~~AlfYe~wA~~lE~~g~ 130 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFN---KGIGT---KLSLFYEEFSKLLENAQF 130 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHH---HTSST---TBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHH---CCCcH---HHHHHHHHHHHHHHHcCC
Confidence 4677777655432 1135777888887777765 23336678887775543 23343 356677788999999999
Q ss_pred hHHHHHHHHHHHH
Q 000191 1077 YPLSVQHEQTTLQ 1089 (1888)
Q Consensus 1077 ydeAle~lqkALe 1089 (1888)
+.+|...|+.+++
T Consensus 131 ~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 131 FLEAKVLLELGAE 143 (202)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
No 383
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=39.42 E-value=6e+02 Score=34.57 Aligned_cols=144 Identities=13% Similarity=0.128 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH--------------------HHHHHHhc-------C------CCChhhHHHHHH
Q 000191 936 GAYSLLAVVLYHTGDFNQATIYQQKA--------------------LDINEREL-------G------LDHPDTMKSYGD 982 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGdyeeAl~~~eKA--------------------L~I~Er~l-------G------~Dhp~ta~ay~n 982 (1888)
.+....+.+||++|+|++|+.|...| ++.+.+.. + .-++.....-..
T Consensus 71 laalvaSkvyy~Lg~~~~al~yaL~aG~~fd~~~~seYv~tiis~cid~y~~~~~~~~~~~~~~~~~~~id~rL~~Lv~~ 150 (963)
T 4ady_A 71 MAALIASKVYYNLGEYESAVKYALAAKDRFDIDEKSQFVETIVSKSIEMYVQEASKQYTKDEQFYTKDIIDPKLTSIFER 150 (963)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHGGGSCTTSCSHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGSSCSCHHHHHHHHH
T ss_pred HHHHHHHHHheeccchHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHH
Confidence 45566788999999999999886554 22221110 0 112344444455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHHHhcCC----CC-hhHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHhcC
Q 000191 983 LAVFYYRLQHTELALKYVKRAL--YLLHLTCGP----SH-PNTAATYINVAMMEEGLGNVHV-ALRYLHKALKCNQRLLG 1054 (1888)
Q Consensus 983 LA~ly~~lGdyeeALey~~kAL--eL~~ki~G~----dh-P~~a~a~~NLA~iy~~lG~yee-Ale~LekALei~ek~~G 1054 (1888)
+-..++..+.+.+|+.++-++. ++..+.... +. .....++..+-.+-...-..++ =..+|+-+++++.+.-.
T Consensus 151 iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~ 230 (963)
T 4ady_A 151 MIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPN 230 (963)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCc
Confidence 6667778888888887776653 333322211 11 1122222222222222222222 24667777777766422
Q ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1055 PDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1055 ~d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
++ |..+.+++..+++.+.+.+.+.+
T Consensus 231 ~d-------y~~a~~~ai~LnD~~li~~if~~ 255 (963)
T 4ady_A 231 CD-------YLTLNKVVVNLNDAGLALQLFKK 255 (963)
T ss_dssp CC-------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hh-------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 22 23334455566666666666655
No 384
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=39.37 E-value=12 Score=27.23 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=12.6
Q ss_pred CCccCCCCCCCCcc
Q 000191 1696 PEFIPGPFLPGYHP 1709 (1888)
Q Consensus 1696 ~~f~p~~~~~~~~~ 1709 (1888)
.||.||-+|-|.|-
T Consensus 8 Pef~pg~pwkG~~~ 21 (22)
T 3ktp_B 8 PEFHPGVPWKGLQN 21 (26)
T ss_pred cccccCCccccccc
Confidence 59999999999884
No 385
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=37.95 E-value=22 Score=43.08 Aligned_cols=71 Identities=10% Similarity=0.186 Sum_probs=49.0
Q ss_pred eEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcC--CcccccccccccccCCCccCCcccccccc---Ccee-EEec
Q 000191 24 VVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNT--ETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVL-SLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~--~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L-~lVe 96 (1888)
..++|+|++...... .+.| ..++|.||++.|.... +-.......|.+ +|..|+|-..|.+.+ |++| .||-
T Consensus 6 ~~M~I~VKtl~Gk~~-~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy--~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 6 SAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCCCEEEEETTTEEE-EECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES--SSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred ceEEEEEEeCCCCEE-EEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE--CCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 457899999966443 3455 4599999999999842 223445555664 999999977777652 6766 6664
Q ss_pred c
Q 000191 97 E 97 (1888)
Q Consensus 97 e 97 (1888)
.
T Consensus 83 k 83 (368)
T 1oqy_A 83 K 83 (368)
T ss_dssp C
T ss_pred c
Confidence 3
No 386
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=34.80 E-value=68 Score=32.10 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=46.9
Q ss_pred eEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccC--C-cccccc--ccC-ceeEEec
Q 000191 24 VVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLK--D-AVDVAA--LKP-CVLSLTE 96 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~--d-~~ei~~--lk~-~~L~lVe 96 (1888)
....|.|.||+...++..--.+|+|.|||+++..... .....|.|..-+--..|. | ...|.+ |.+ ++|.|..
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~-~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG-NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT-TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC-CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 4678999999998777776788999999999988642 344567776422223454 3 234444 345 5554443
No 387
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=34.22 E-value=53 Score=32.88 Aligned_cols=55 Identities=9% Similarity=0.020 Sum_probs=40.3
Q ss_pred CeEEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccC
Q 000191 23 PVVLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLK 79 (1888)
Q Consensus 23 ~~~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~ 79 (1888)
+.+..|.|.||++..++..--.+|+|++|+.++..+.. .-..|.|..-+=...|.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~~--~~~~f~L~t~fPrk~l~ 75 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGY--HKSLYRLSTSFPRRALE 75 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTC--CTTTEEEECSSSCCBCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCC--CCCCeEEEeCCCCcCCC
Confidence 45899999999999888777788999999999986532 34567775322233453
No 388
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=33.38 E-value=6.6e+02 Score=29.55 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHh
Q 000191 936 GAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTEL--ALKYVKRALYLLHLT 1010 (1888)
Q Consensus 936 ~ay~~LA~ly~~lGd---yeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyee--ALey~~kALeL~~ki 1010 (1888)
+.+..-|.+.-..|- -+-|-+++.+|+.++|... .|+.....+...+...+.....+.+ -..+..++.....++
T Consensus 100 rL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~I-sdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askL 178 (298)
T 2r17_C 100 RLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEI-SDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 178 (298)
T ss_dssp HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhc
Confidence 444444555555555 5677889999999999854 3444555666666655666665421 111122222222222
Q ss_pred cCCCChhHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH---HHHHHHHHHcCCh
Q 000191 1011 CGPSHPNTAATYINVAMMEEG----------LGNVHVALRYLHKALKCNQRLLGPDHIQTAASY---HAIAIALSLMEAY 1077 (1888)
Q Consensus 1011 ~G~dhP~~a~a~~NLA~iy~~----------lG~yeeAle~LekALei~ek~~G~d~~~tA~al---~nLA~ay~~lGdy 1077 (1888)
+ .-|+-..+.+..+.++.. ..+-+..++++++||++...... .......+ .+.-..|+..|.-
T Consensus 179 L--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d--~~~~v~LfveILn~ylyff~~g~~ 254 (298)
T 2r17_C 179 L--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD--PSLQVQLFIEILNRYIYFYEKEND 254 (298)
T ss_dssp S--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred c--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHhhhhCCCC
Confidence 2 236666666666666653 24677899999999999876521 11111111 2223344445554
Q ss_pred HHHHHHHHHHHHHHHH
Q 000191 1078 PLSVQHEQTTLQILRA 1093 (1888)
Q Consensus 1078 deAle~lqkALeI~kk 1093 (1888)
.-..+++..-+++.+.
T Consensus 255 ~Vt~~~in~LI~lI~~ 270 (298)
T 2r17_C 255 AVTIQVLNQLIQKIRE 270 (298)
T ss_dssp TSCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH
Confidence 3344444444444444
No 389
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=33.10 E-value=3.9e+02 Score=36.37 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER 967 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~--dhpe~A~ay~~LA~ly~~lGdyeeAl~~~eKAL~I~Er 967 (1888)
...+..++.+|.++...+ .+++.++...+.--..+.|. .......+...||.+|.-.++- ++...+...+.
T Consensus 410 ~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-ev~e~L~~~L~---- 482 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-EVYEALKEVLY---- 482 (963)
T ss_dssp HHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHh----
Confidence 345777887887776444 56777777766542211111 0112223555788888777763 45555544443
Q ss_pred hcCCCChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000191 968 ELGLDHPDT-MKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKAL 1046 (1888)
Q Consensus 968 ~lG~Dhp~t-a~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekAL 1046 (1888)
.++... ..+-..||.++...|+-+....++..+.+ ..|..+. -..-+|..+...|+.+.+...++...
T Consensus 483 ---dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-------~~~e~vr-R~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 483 ---NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-------TQHGNIT-RGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-------CSCHHHH-HHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc-------cCcHHHH-HHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 223222 24556788888888887665555554442 2233332 22345555556777665555444322
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHH-HHHHH
Q 000191 1047 KCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQ-HEQTT 1087 (1888)
Q Consensus 1047 ei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle-~lqkA 1087 (1888)
.. .+......+.+.+|.+|...|+-. |++ .+..+
T Consensus 552 ~~------~dp~vRygaa~alglAyaGTGn~~-aIq~LL~~~ 586 (963)
T 4ady_A 552 AS------DESLLRYGGAFTIALAYAGTGNNS-AVKRLLHVA 586 (963)
T ss_dssp HC------SCHHHHHHHHHHHHHHTTTSCCHH-HHHHHHHHH
T ss_pred hC------CCHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHh
Confidence 21 222223334456788888999864 444 44433
No 390
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.17 E-value=88 Score=30.22 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=50.5
Q ss_pred CeEEEEEEEcC--CCCceEEEccCh-hhHHHHHHHhhhcCCcccccccccccccC--C-C--cc-CCcccccccc---Cc
Q 000191 23 PVVLDITVNLP--DDTRVILKGIST-DRIIDVRRLLSVNTETCSITNFSLSHEIR--G-P--RL-KDAVDVAALK---PC 90 (1888)
Q Consensus 23 ~~~~~itv~lP--~~~~~~~~~is~-d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~--G-~--~L-~d~~ei~~lk---~~ 90 (1888)
-.++.|+|+.| .+.+.+.+.++. .+|.++++.|.....+.. .+..|++.-. + . .| +|...+.... |+
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~-~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~ 85 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPV-SELLLSYESSKMPGREIELENDLQPLQFYSVENGD 85 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCT-TTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTC
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCCh-hHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCC
Confidence 35688888887 455677777744 999999999999887544 6777876211 1 1 24 6666666643 78
Q ss_pred eeEEec
Q 000191 91 VLSLTE 96 (1888)
Q Consensus 91 ~L~lVe 96 (1888)
.|.|++
T Consensus 86 ~I~V~d 91 (97)
T 1wjn_A 86 CLLVRW 91 (97)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 998877
No 391
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=31.13 E-value=2.7e+02 Score=28.22 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=27.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHhcC-C-CCHHHHHH
Q 000191 1068 AIALSLMEAYPLSVQHEQTTLQILRAKLG-P-DDLRTQDA 1105 (1888)
Q Consensus 1068 A~ay~~lGdydeAle~lqkALeI~kk~LG-~-dh~~tl~a 1105 (1888)
|.-+-..|+|++|+.+|.+|+++|...+. . .+......
T Consensus 25 Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~ 64 (117)
T 2cpt_A 25 AAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQS 64 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 44445679999999999999999887652 2 45544433
No 392
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=30.15 E-value=62 Score=30.39 Aligned_cols=70 Identities=11% Similarity=0.004 Sum_probs=51.3
Q ss_pred CeEEEEEEEcCCCC-ceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc---CceeEEe
Q 000191 23 PVVLDITVNLPDDT-RVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK---PCVLSLT 95 (1888)
Q Consensus 23 ~~~~~itv~lP~~~-~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk---~~~L~lV 95 (1888)
+..++|.|+..+.. .+.++.-.++++..|-....+... +....+.|.+ +|.+|++.....++. |.+|.+.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g-i~~~~~rf~f--dG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG-LSGHKLSFFF--DGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT-CTTCCCEEEE--TTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC-CCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 45689999999886 566666567888888888887655 4556677764 999999977666653 5666653
No 393
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=30.06 E-value=1.6e+02 Score=30.03 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 890 SADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 927 (1888)
Q Consensus 890 s~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~ 927 (1888)
...|..+...|...-..|+|++|+.+|.+|++++..+.
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888889999999999999999877664
No 394
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=29.88 E-value=53 Score=31.08 Aligned_cols=67 Identities=16% Similarity=0.173 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCccccccc---cCceeEEecc
Q 000191 26 LDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAAL---KPCVLSLTEE 97 (1888)
Q Consensus 26 ~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~l---k~~~L~lVee 97 (1888)
+.+.+++... .+...+ ..++|.|+++.|..... +.-....|. ++|..|+|-..|+++ .|++|.||--
T Consensus 13 ~~~~~~~~g~--~~~l~v~~~~TV~~LK~~I~~~~g-ip~~~qrL~--~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 13 IKLTVKFGGK--SIPLSVSPDCTVKDLKSQLQPITN-VLPRGQKLI--FKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEEETTE--EEEEEECTTSBHHHHHHHHHHHHC-CCTTTCEEE--ETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEEECCE--EEEEEECCCCcHHHHHHHHHHHHC-cChHHEEEE--ECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4445555332 223345 44999999999998654 344556666 499999998777775 3788888753
No 395
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=29.81 E-value=7.8e+02 Score=29.30 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-------------HHHHHh--c--CCC----------------------Ch-----h
Q 000191 982 DLAVFYYRLQHTELALKYVKRAL-------------YLLHLT--C--GPS----------------------HP-----N 1017 (1888)
Q Consensus 982 nLA~ly~~lGdyeeALey~~kAL-------------eL~~ki--~--G~d----------------------hP-----~ 1017 (1888)
.++.-+...|.|+.|+.++++-+ +++... + +.. .| .
T Consensus 33 ~laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~~l~ 112 (325)
T 3mv2_A 33 KLPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVPGLD 112 (325)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCCCHH
T ss_pred CcHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCCCHH
Confidence 37888899999999999888642 232211 0 000 01 1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000191 1018 TAATYINVAMMEEGLGNVHVALRYLHKALKCNQ 1050 (1888)
Q Consensus 1018 ~a~a~~NLA~iy~~lG~yeeAle~LekALei~e 1050 (1888)
.+......|.-+...|++++|+..|+.+|....
T Consensus 113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~ 145 (325)
T 3mv2_A 113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYRIT 145 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 233355667778899999999999999987653
No 396
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=29.40 E-value=8.1e+02 Score=29.40 Aligned_cols=38 Identities=3% Similarity=-0.273 Sum_probs=25.8
Q ss_pred cccHHHHHHHHHHHHHHHHcC------------ChHHHHHHHHHHHHHHH
Q 000191 887 ACSSADGRQLLESSKTALDKG------------KLEDAVTYGTKALAKLV 924 (1888)
Q Consensus 887 ~~~s~~A~~LlelG~~~l~qG------------d~dEAie~~eeAL~l~e 924 (1888)
......+-.|+++|..+.+.| .+..|..+|++|-.++.
T Consensus 108 sl~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~ 157 (376)
T 3r9m_A 108 DAVFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFK 157 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 334556777777776665432 26788899999887654
No 397
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=28.16 E-value=3.6e+02 Score=25.83 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc-CCCCHHHHHH
Q 000191 1063 SYHAIAIALSLMEAYPLSVQHEQTTLQILRAKL-GPDDLRTQDA 1105 (1888)
Q Consensus 1063 al~nLA~ay~~lGdydeAle~lqkALeI~kk~L-G~dh~~tl~a 1105 (1888)
.+...|.-+-..|+|++|+.+|.+|++.+...+ ...++.....
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~ 61 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCN 61 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH
Confidence 334445555678999999999999999988765 3345544333
No 398
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=27.52 E-value=1.8e+02 Score=28.39 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCCCChhHHHHH-HHHHHH
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAY-SLLAVV 944 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~G~dhpe~A~ay-~~LA~l 944 (1888)
..++.++..|..++..|+|.+|..+|+++..+ .+++++-.++ ..++.|
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec 99 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEEC 99 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHH
Confidence 56888889999999999999999999999877 4566665554 444444
No 399
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=26.57 E-value=52 Score=33.71 Aligned_cols=66 Identities=12% Similarity=0.232 Sum_probs=46.6
Q ss_pred EEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccccc----------CceeEEe
Q 000191 27 DITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAALK----------PCVLSLT 95 (1888)
Q Consensus 27 ~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~lk----------~~~L~lV 95 (1888)
+|-|.+-..-.+|...+ ++|+|.+|++.|.+... ..-..-.|-+ .|..|+|.-.|++.+ |++|.||
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g-iPp~qQrLI~--~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK-RPPDEQRLYK--DDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC-CCGGGEEEEE--TTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC-CCHHHeEEEe--CCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 45566666665666656 66999999999988654 2333445654 899999987777743 6888887
No 400
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=26.32 E-value=40 Score=34.49 Aligned_cols=65 Identities=11% Similarity=0.245 Sum_probs=44.1
Q ss_pred EEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCCCccCCcccccc--cc--------CceeEEe
Q 000191 28 ITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKDAVDVAA--LK--------PCVLSLT 95 (1888)
Q Consensus 28 itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d~~ei~~--lk--------~~~L~lV 95 (1888)
|.|++-.....+...+ ++|+|.+|++.|.+.... +-....|.+ +|..|+|...|++ |+ +|+|.||
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egI-P~~qQrLi~--~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKR-PPEEQRLYK--DDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCC-CGGGEEEEE--TTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCC-CHHHeEEEE--CCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence 3333333333344444 669999999999997663 445556764 9999999877765 33 6888887
No 401
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.13 E-value=1.6e+02 Score=39.97 Aligned_cols=70 Identities=13% Similarity=-0.101 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-------------HhcCCC--ChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000191 937 AYSLLAVVLYHTGDFNQATIYQQKALDINE-------------RELGLD--HPDTMKSYGDLAVFYYRLQHTELALKYVK 1001 (1888)
Q Consensus 937 ay~~LA~ly~~lGdyeeAl~~~eKAL~I~E-------------r~lG~D--hp~ta~ay~nLA~ly~~lGdyeeALey~~ 1001 (1888)
.-+.+|++|...|++++|..+|+||-.-.. .++... .......|.+++.++...+-++-++.+.+
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~ 921 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 921 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 457899999999999999999998742110 000000 01122355566666666666666666666
Q ss_pred HHHHH
Q 000191 1002 RALYL 1006 (1888)
Q Consensus 1002 kALeL 1006 (1888)
.|+..
T Consensus 922 lAI~~ 926 (950)
T 4gq2_M 922 LADAS 926 (950)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 66653
No 402
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=26.11 E-value=8.5e+02 Score=28.57 Aligned_cols=154 Identities=14% Similarity=0.117 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHh
Q 000191 894 RQLLESSKTALDKGK---LEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDF--NQATIYQQKALDINERE 968 (1888)
Q Consensus 894 ~~LlelG~~~l~qGd---~dEAie~~eeAL~l~eqi~G~dhpe~A~ay~~LA~ly~~lGdy--eeAl~~~eKAL~I~Er~ 968 (1888)
+.+++.|.+.-..|- -+-|.++|.+|+.+++.-. .+......+...+...+..+..+ +.-..+..++....-++
T Consensus 100 rL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~I-sdSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~askL 178 (298)
T 2r17_C 100 RLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEI-SDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 178 (298)
T ss_dssp HHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHhc
Confidence 444555555555555 5668899999999998853 34455556666666666666543 33334445554444444
Q ss_pred cCCCChhhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHHhcCCCChhH---HHHHHHHHHHHHHCCCH
Q 000191 969 LGLDHPDTMKSYGDLAVFYYR----------LQHTELALKYVKRALYLLHLTCGPSHPNT---AATYINVAMMEEGLGNV 1035 (1888)
Q Consensus 969 lG~Dhp~ta~ay~nLA~ly~~----------lGdyeeALey~~kALeL~~ki~G~dhP~~---a~a~~NLA~iy~~lG~y 1035 (1888)
+ ..++...+.+.-+.++.. ..+-+..+++++||+.+...... .... ..-..|....|...|+-
T Consensus 179 L--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d--~~~~v~LfveILn~ylyff~~g~~ 254 (298)
T 2r17_C 179 L--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD--PSLQVQLFIEILNRYIYFYEKEND 254 (298)
T ss_dssp S--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred c--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHhhhhCCCC
Confidence 3 346777777777777764 24678999999999999877522 1111 11233455666677775
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000191 1036 HVALRYLHKALKCNQRL 1052 (1888)
Q Consensus 1036 eeAle~LekALei~ek~ 1052 (1888)
.-..+++...+++....
T Consensus 255 ~Vt~~~in~LI~lI~~~ 271 (298)
T 2r17_C 255 AVTIQVLNQLIQKIRED 271 (298)
T ss_dssp TSCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHH
Confidence 55666777777666554
No 403
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=26.00 E-value=2.6e+02 Score=35.10 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000191 994 ELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALK 1047 (1888)
Q Consensus 994 eeALey~~kALeL~~ki~G~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALe 1047 (1888)
++|+++|++|+..++++...+.+.....+.+++..| +-|-.+|.+|-+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~y------E~aGDyy~~AA~ 496 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKH------EMAGDYYVNAAR 496 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhh------hhccHHHHHHHH
Confidence 678888888888888887788888877777777654 445555555544
No 404
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.81 E-value=1.1e+02 Score=29.42 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=47.9
Q ss_pred eEEEEEEEcCCCCceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccCC---Cc----cCCccccccc---cCcee
Q 000191 24 VVLDITVNLPDDTRVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIRG---PR----LKDAVDVAAL---KPCVL 92 (1888)
Q Consensus 24 ~~~~itv~lP~~~~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G---~~----L~d~~ei~~l---k~~~L 92 (1888)
..+.|+|+-......+.+.+ ..++|.+|++.|...... .-.+..|.+ .| .. ++|-..+.+. .|++|
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gi-p~~~qrL~~--~~~~g~~~~~l~~D~~tL~~y~i~~g~~l 82 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGS-PASCMELEL--YGADDKFYSKLDQEDALLGSYPVDDGCRI 82 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCS-CTTTCBCEE--ECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCC-CHHHeEEEE--eCCCCccccccCCCcCCHhHCCCCCCCEE
Confidence 45777777654432344455 459999999999998663 456667775 54 33 4776667664 37999
Q ss_pred EEec
Q 000191 93 SLTE 96 (1888)
Q Consensus 93 ~lVe 96 (1888)
.||.
T Consensus 83 ~v~d 86 (95)
T 1v6e_A 83 HVID 86 (95)
T ss_dssp EEBC
T ss_pred EEEE
Confidence 9986
No 405
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=25.43 E-value=56 Score=33.68 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=39.2
Q ss_pred EEEEEEEcCCCCceEEEccChhhHHHHHHHhhhcCCcccccccccccccCCCccCC
Q 000191 25 VLDITVNLPDDTRVILKGISTDRIIDVRRLLSVNTETCSITNFSLSHEIRGPRLKD 80 (1888)
Q Consensus 25 ~~~itv~lP~~~~~~~~~is~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~G~~L~d 80 (1888)
...|.|.||++..++..--.+|+|.|||+++..+-.-.....|.|..-+-...|+|
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d 107 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELAD 107 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCS
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCC
Confidence 57899999999877776678899999999998853222234567754223345554
No 406
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=24.60 E-value=5.1e+02 Score=31.21 Aligned_cols=37 Identities=14% Similarity=-0.011 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHH
Q 000191 888 CSSADGRQLLESSKTALDKGK---------LEDAVTYGTKALAKLV 924 (1888)
Q Consensus 888 ~~s~~A~~LlelG~~~l~qGd---------~dEAie~~eeAL~l~e 924 (1888)
.....+..|+++|..+.+.|. +..|..+|++|-..+.
T Consensus 137 l~fE~a~VLfNlgal~s~~A~~~~r~~~eglK~A~~~fq~AAG~f~ 182 (380)
T 3c3r_A 137 LGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAFL 182 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 345567778888776654321 5778888888877644
No 407
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.57 E-value=1.1e+02 Score=29.23 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 926 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi 926 (1888)
..|..+...|..+=..|+|++|+.+|.+|++.+...
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 447778888888889999999999999999986654
No 408
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.30 E-value=4.5e+02 Score=25.90 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC-CCHHHHHHH
Q 000191 1058 IQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP-DDLRTQDAA 1106 (1888)
Q Consensus 1058 ~~tA~al~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~-dh~~tl~a~ 1106 (1888)
.+.|..+...|..+...|.|++|+.+.++|...+...+.- ....+..++
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SL 61 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSL 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3566777888999999999999999999999887766543 344444433
No 409
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=24.19 E-value=1e+03 Score=28.88 Aligned_cols=29 Identities=3% Similarity=-0.222 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1140 LSVSDLLDYINPSHDTKGRNVSTLKRKTY 1168 (1888)
Q Consensus 1140 ~svaelL~~Lg~~y~~qGdyeEAleyyeK 1168 (1888)
..+...+...+.+...+|+.+.|++|++.
T Consensus 333 ~~l~~~~~eYA~lLA~qG~l~~A~~yL~~ 361 (399)
T 2pm7_A 333 EQLIAKFLEFINLTTSTGNFELATEFLNS 361 (399)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35677788889999999999999999953
No 410
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=23.83 E-value=5.1e+02 Score=33.46 Aligned_cols=126 Identities=12% Similarity=-0.029 Sum_probs=75.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000191 942 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAAT 1021 (1888)
Q Consensus 942 A~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~ki~G~dhP~~a~a 1021 (1888)
+.......+.+.|..++.+.... ...+..........+|.-+...+...++..++.++.. .........
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~----~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~e- 289 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM------RSQSTSLIE- 289 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH------TCCCHHHHH-
T ss_pred HHHHHHhcCHHHHHHHHHhhhhc----cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc------cCCChHHHH-
Confidence 33334445778887777655431 1223333444555566666666645666667766432 122233332
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000191 1022 YINVAMMEEGLGNVHVALRYLHKALKCNQRLLGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQTTL 1088 (1888)
Q Consensus 1022 ~~NLA~iy~~lG~yeeAle~LekALei~ek~~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqkAL 1088 (1888)
..++..+ ..|+++.|..+|+..-. .........+.+|.++..+|+.++|..+|+++.
T Consensus 290 -~~~r~Al-r~~d~~~a~~~~~~l~~--------~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 290 -RRVRMAL-GTGDRRGLNTWLARLPM--------EAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp -HHHHHHH-HHTCHHHHHHHHHHSCT--------TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHH-HCCCHHHHHHHHHHccc--------cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2234444 56999999998854322 222356678889999999999999999887764
No 411
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=23.73 E-value=1.2e+02 Score=28.96 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHh
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAV 926 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi 926 (1888)
..|..+...|..+=..|+|++|+.+|.+|++.+...
T Consensus 9 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~ 44 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQI 44 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 356778888888888999999999999999886654
No 412
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.34 E-value=98 Score=29.47 Aligned_cols=37 Identities=11% Similarity=0.041 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHhc
Q 000191 891 ADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVC 927 (1888)
Q Consensus 891 ~~A~~LlelG~~~l~qGd~dEAie~~eeAL~l~eqi~ 927 (1888)
...-....+|+.|...|+|+.|+.||+.++....+.+
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l 46 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYL 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3445566778999999999999999999998766543
No 413
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.59 E-value=2.5e+02 Score=38.13 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=55.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------
Q 000191 941 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHL----------- 1009 (1888)
Q Consensus 941 LA~ly~~lGdyeeAl~~~eKAL~I~Er~lG~Dhp~ta~ay~nLA~ly~~lGdyeeALey~~kALeL~~k----------- 1009 (1888)
+...+...|.++-|.++. .. + +.+...-+-+|.+|...|++++|..+|++|-.....
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~----~----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW----L----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG----C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHH
T ss_pred HHHHHHHhcHHHHHHHHH----hh----c----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhh
Confidence 455566677776543321 11 1 122223367999999999999999999987532100
Q ss_pred --hcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000191 1010 --TCG--PSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKC 1048 (1888)
Q Consensus 1010 --i~G--~dhP~~a~a~~NLA~iy~~lG~yeeAle~LekALei 1048 (1888)
+.. +........|..+..++...+-++.++++.+.|+..
T Consensus 884 ~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 884 QEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000 000112235566666666777777777777666654
No 414
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=21.48 E-value=1.8e+02 Score=27.75 Aligned_cols=72 Identities=11% Similarity=0.098 Sum_probs=47.9
Q ss_pred EEEEEEEcC-CCCceEEEccCh-hhHHHHHHHhhhcCCcccccccccccc-----cCCCccCCccccccc---cCceeEE
Q 000191 25 VLDITVNLP-DDTRVILKGIST-DRIIDVRRLLSVNTETCSITNFSLSHE-----IRGPRLKDAVDVAAL---KPCVLSL 94 (1888)
Q Consensus 25 ~~~itv~lP-~~~~~~~~~is~-d~v~dvrq~L~~~~~Tc~~T~fsL~~~-----~~G~~L~d~~ei~~l---k~~~L~l 94 (1888)
++.|+|.-= ....+..+-++. ++|.+|++.|.....+- -.+-.|.+. +-|..|+|...+.+. .|++|+|
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip-~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATP-PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCC-GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCC-HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 455565432 233555666755 99999999999876653 334445531 135678888777775 3899999
Q ss_pred ecc
Q 000191 95 TEE 97 (1888)
Q Consensus 95 Vee 97 (1888)
|+-
T Consensus 81 vd~ 83 (86)
T 4b6w_A 81 VDL 83 (86)
T ss_dssp EEC
T ss_pred EeC
Confidence 973
No 415
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.21 E-value=2.2e+02 Score=27.08 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHhcCC
Q 000191 1064 YHAIAIALSLMEAYPLSVQHEQTTLQILRAKLGP 1097 (1888)
Q Consensus 1064 l~nLA~ay~~lGdydeAle~lqkALeI~kk~LG~ 1097 (1888)
...+|+=|...|+|+.|+.+|+.+++...+.+..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 3467888999999999999999999887776544
No 416
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=20.81 E-value=4.1e+02 Score=32.64 Aligned_cols=29 Identities=10% Similarity=-0.098 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000191 978 KSYGDLAVFYYRLQHTELALKYVKRALYL 1006 (1888)
Q Consensus 978 ~ay~nLA~ly~~lGdyeeALey~~kALeL 1006 (1888)
..+..|+..+...++|.+|--++.++..+
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44568999999999999998888755543
No 417
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=20.69 E-value=4e+02 Score=25.78 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000191 1017 NTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRL--LGPDHIQTAASYHAIAIALSLMEAYPLSVQHEQT 1086 (1888)
Q Consensus 1017 ~~a~a~~NLA~iy~~lG~yeeAle~LekALei~ek~--~G~d~~~tA~al~nLA~ay~~lGdydeAle~lqk 1086 (1888)
..+..+...|.-+...|+|++|+.+|..|++.+... ..++......+...+...+.+.......+....+
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~~~ 84 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEKE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 418
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.55 E-value=1e+02 Score=30.07 Aligned_cols=72 Identities=6% Similarity=0.075 Sum_probs=50.0
Q ss_pred cCeEEEEEEEcCCCC-ceEEEcc-ChhhHHHHHHHhhhcCCcccccccccccccC--CC---cc-CCccccccc---cCc
Q 000191 22 LPVVLDITVNLPDDT-RVILKGI-STDRIIDVRRLLSVNTETCSITNFSLSHEIR--GP---RL-KDAVDVAAL---KPC 90 (1888)
Q Consensus 22 ~~~~~~itv~lP~~~-~~~~~~i-s~d~v~dvrq~L~~~~~Tc~~T~fsL~~~~~--G~---~L-~d~~ei~~l---k~~ 90 (1888)
-+..|.|.|+.+... +.+.+.+ ++++|.+|++.|...+. ..-.+-.|.+ + |. .| +|...+.+. +|+
T Consensus 12 ~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G-iP~~~QrL~~--~~~g~~~~~L~~D~~tL~~Y~i~~gs 88 (95)
T 2kjr_A 12 KSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG-GCAGTMKVQV--FKGDTCVSTMDNNDAQLGYYANSDGL 88 (95)
T ss_dssp CCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC-SCTTTEEEEE--EETTEEEEECCCTTSBHHHHCCSSSC
T ss_pred CCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC-cCHHHeEEEE--ecCCcccceeCCCCCCHhHCCcCCCC
Confidence 367899999987654 3455555 55999999999998765 3344555654 4 33 34 777667664 379
Q ss_pred eeEEec
Q 000191 91 VLSLTE 96 (1888)
Q Consensus 91 ~L~lVe 96 (1888)
+|.||.
T Consensus 89 tihlvD 94 (95)
T 2kjr_A 89 RLHVVD 94 (95)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999986
Done!