Query 000192
Match_columns 1887
No_of_seqs 206 out of 265
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 22:47:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5103 CDC39 Cell division co 100.0 1E-198 3E-203 1798.7 82.8 1400 6-1810 25-1463(2005)
2 KOG1831 Negative regulator of 100.0 2E-160 5E-165 1497.7 56.5 933 532-1814 82-1034(1591)
3 PF12842 DUF3819: Domain of un 100.0 2.8E-46 6.1E-51 397.3 18.0 145 1308-1452 1-147 (147)
4 KOG1831 Negative regulator of 97.6 0.013 2.8E-07 79.1 25.9 294 1010-1436 658-952 (1591)
5 smart00543 MIF4G Middle domain 93.1 0.9 2E-05 50.8 12.3 181 972-1162 2-196 (200)
6 PF02854 MIF4G: MIF4G domain; 84.2 3.9 8.5E-05 45.7 8.8 108 973-1081 3-117 (209)
7 KOG1467 Translation initiation 83.4 3.6 7.8E-05 52.1 8.4 119 1327-1451 249-387 (556)
8 COG5088 SOH1 Rad5p-binding pro 52.1 32 0.0007 35.3 5.7 89 984-1077 15-108 (114)
9 PF02847 MA3: MA3 domain; Int 48.9 1.2E+02 0.0027 31.1 9.8 85 671-765 3-87 (113)
10 PF08542 Rep_fac_C: Replicatio 35.8 98 0.0021 30.6 6.4 61 7-70 3-63 (89)
11 KOG2140 Uncharacterized conser 26.2 1.5E+02 0.0032 38.8 6.9 173 968-1163 162-345 (739)
12 smart00544 MA3 Domain in DAP-5 25.7 1.9E+02 0.004 29.9 6.7 71 686-765 17-87 (113)
13 KOG3769 Ribonuclease III domai 24.5 1.5E+02 0.0033 36.3 6.3 50 121-170 111-160 (333)
14 PRK00218 putative lysogenizati 21.6 2E+02 0.0044 33.7 6.5 101 690-815 21-134 (207)
15 PF15256 SPATIAL: SPATIAL 20.9 80 0.0017 36.6 3.1 41 1714-1757 154-195 (196)
No 1
>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]
Probab=100.00 E-value=1.2e-198 Score=1798.67 Aligned_cols=1400 Identities=26% Similarity=0.389 Sum_probs=1051.1
Q ss_pred CCcHHHHHHHHHhhhhhchHHHHHHHHHHHH-hcccchhHHHHhhhhccccCC-CCCCChh---hHHHHHHHHHHhhcCC
Q 000192 6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHLNLHG-TGLKNPQ---LESVVASVFKYIMDKP 80 (1887)
Q Consensus 6 ~~~~~qI~~Lv~~l~k~n~~~~~~el~qlv~-~G~ea~~~lLr~~l~~~~~~~-~~~k~~~---~~~LL~~~~~~ll~kp 80 (1887)
+.+-+||.+|++.|+..||++.-+||.|+++ ...+-.+++||.++.--.++- +.+|... --++|-+||+.++.|-
T Consensus 25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~tGK~~~~~a~~~~LL~Elks~~~Kr 104 (2005)
T COG5103 25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKKR 104 (2005)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhccCcccchhHHHHHHHHHHHhhhhhh
Confidence 4577899999999999999999999999997 999999999999996443311 1345443 4588999999999865
Q ss_pred CccchhhhhccCcc--ccHHHHHHHHhhcCCCchhhhhhhhhhccCCChHHHHHHHHHHHHHHHHHhh---CCCC--CCC
Q 000192 81 NFSTVFSQSVKITE--INEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCA---NPVP--MNS 153 (1887)
Q Consensus 81 ~f~T~lc~A~~~~~--~~~~fl~~ls~~L~Ls~~qev~~gLAL~~S~n~e~r~~a~~f~~~~i~eL~~---n~~~--~~s 153 (1887)
. ..|+.+.+ .=++|-=+++ +||.++ .+++..--++. -|++ ++.
T Consensus 105 ~-----sD~Is~~dsevFed~~FQ~s------------iGlT~S-------------Ll~n~Fqs~~Nq~~~~t~qqS~d 154 (2005)
T COG5103 105 F-----SDAISGSDSEVFEDFHFQFS------------IGLTTS-------------LLKNTFQSLLNQLSDPTQQQSID 154 (2005)
T ss_pred h-----hhHhhcchhhhhcchhhhhh------------hhhhHH-------------HHHHHHHHHHhhccchHhhhhcc
Confidence 4 56666642 2223322222 444444 33333333330 1111 111
Q ss_pred HHHHHHHHHHHhhccchhH-hHHHHHHHHhhhcCCCCCCccccCCCCCCcccccccccccccccCCCcchHHHHHHhhhc
Q 000192 154 AEQIQNIIMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKE 232 (1887)
Q Consensus 154 ~e~lh~il~~l~~~~~ls~-~~~~f~~~l~~~~p~~~~p~~laPll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (1887)
-+-+. .|+ +|-.. ...-|.+.+...--+.+ | + .. +.+.++.+- +.+..+
T Consensus 155 ~NDld----~lr--~~~Tdydr~~f~q~i~~~Le~s~-~-----~-------------~~-~~~p~e~~~-~~l~~~--- 204 (2005)
T COG5103 155 KNDLD----LLR--EGTTDYDRKIFRQEIKDVLEKSD-P-----L-------------TA-LFGPREVDR-SFLDDA--- 204 (2005)
T ss_pred cchHH----HHh--cCCchHHHHHHHHHhHHHHHcCC-c-----h-------------hh-hcCcchhhH-HHHHHH---
Confidence 11111 111 12111 11123332221111110 0 0 00 000011000 111111
Q ss_pred CcHHHHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCcccchhHhhhccCCCCCCCCCCCCCCH
Q 000192 233 MSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNV 312 (1887)
Q Consensus 233 ~sl~~~i~elG~~~t~s~~~c~~~L~~~~~l~e~~va~vlg~ma~t~sgl~~~~~~~~~~~~~~g~~~~s~~~~~~tWn~ 312 (1887)
..++|+-.+.-++.|||+.+-.|+.- +..+.||.
T Consensus 205 --------------------l~~Il~P~~~~~~~dvar~il~~~~~--------------------------~D~~~w~~ 238 (2005)
T COG5103 205 --------------------LQRILRPRREVVPEDVARAILFMADF--------------------------PDRGEWNL 238 (2005)
T ss_pred --------------------HHHHhCCCccCCcchHHHHHhhhhhc--------------------------ccccccch
Confidence 33455544468889999985444422 23457999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCcccccccCCcccChhh-hHHHHHHHhhCC
Q 000192 313 DVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVASP 390 (1887)
Q Consensus 313 ~v~v~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~Fpi~~l~~~~W~N~~~-QlSfl~~~l~~p 390 (1887)
-..+.+++..+..+||.+|+.+||.+.|.|+....+..++++|-. +.+.+||.+.+|. .|+|... |+++.-|+.+.+
T Consensus 239 v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi~s~~ 317 (2005)
T COG5103 239 VAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHIESDE 317 (2005)
T ss_pred HHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheeeeecc
Confidence 999999999999999999999999999999977777766666555 4567899999995 8999999 556666666777
Q ss_pred CCccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc--
Q 000192 391 PEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI-- 466 (1887)
Q Consensus 391 ~d~f~f~~-~~r~~v~~d~~~~~~~~~-~~~~~~W~sldLve~L~~Lae~~~~~~vr~l~e~p~k~cpellllgl~qi-- 466 (1887)
...|+... .+.+.|..+...+.+... -...+++||.+|++++ .+++.....-..++| +...||++.+||..+
T Consensus 318 ~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~-~l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~~ 393 (2005)
T COG5103 318 KRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCI-MLGSLPLIEYIARLF---LNKSPEWCAAGLGFVQP 393 (2005)
T ss_pred cchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHH-HhccchHHHHHHHHH---hccCHHHHHHHHHHhhh
Confidence 77777643 345555554444333322 2377999999999999 344333323333466 789999999999754
Q ss_pred ---CcchhHHHHHHHHhhhHHhHc-CCCchHHHHHHhhcCchhhHHHHHHhhhcCCccHHHHHHHHHHhhhhhhhhccCC
Q 000192 467 ---NTAYNLIQYEVSFAVFPMIIK-STMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIP 542 (1887)
Q Consensus 467 ---~~~~~~l~~ell~~l~~~fl~-~~~~s~vi~~lW~~~~~~v~~~l~d~y~~d~~~l~rIldvaqelk~L~~lL~~~p 542 (1887)
+-.||+.+.+.+...+-+++. ..+|++|+..+...+|+++++...-...+|...++|++|+.-|+|.|+.+.|..|
T Consensus 394 ~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~lP 473 (2005)
T COG5103 394 KFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLLP 473 (2005)
T ss_pred hhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcCC
Confidence 447999999988888888775 4688999999999999999999977779999999999999999999999999999
Q ss_pred chhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHHH
Q 000192 543 SPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVI 617 (1887)
Q Consensus 543 f~faidLA~lAsrre~L~LekWL~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~etv~~l 617 (1887)
..|++|+++|++.|+.++|..|+..++....+ + |+...++||+.|+.......+.+ ..+.+ ++..|+-.+
T Consensus 474 ~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q~---ee~~~--f~~~tviei 548 (2005)
T COG5103 474 PEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQK---EESVM--FPLNTVIEI 548 (2005)
T ss_pred HHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhhc---cccee--eehhhHHHH
Confidence 99999999999999999999999999987665 3 99999999999997542211100 11122 344555555
Q ss_pred HHHHHhhhCCCCchHHHHHHHHHHHHhhccCCCCCCCC-CCCCC-----CCCCCchhHHHHHHHHHHHhhccCCCHHHHH
Q 000192 618 LKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADSS-----TSEGYADDIEAEANSYFHQMFSGQLTIEAMV 691 (1887)
Q Consensus 618 l~~L~~~~~~~~s~~l~e~l~~~~~~~l~~~PrL~n~~-~~d~~-----~~~~f~~dVE~Ean~yfqkmY~~eisI~eiv 691 (1887)
|..+..... .-.+.++.++..|++.||||+++| +||+. +.++++.|||+||.+|||+||+++++|+++|
T Consensus 549 l~t~~~~V~-----q~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~I 623 (2005)
T COG5103 549 LGTFTKAVE-----QYIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESSI 623 (2005)
T ss_pred HHHhHHHHH-----HHHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHHH
Confidence 554433222 115677888889999999999997 67763 4567999999999999999999999999999
Q ss_pred HHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCcc
Q 000192 692 QMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKM 771 (1887)
Q Consensus 692 ~~L~~~k~S~~~rdqdvFaCMih~LFdEYrFf~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~ILeAlr~p~~skM 771 (1887)
+.||+|++|++|||+|+|+|+.|.|||||+||++||.++|++|||||||||+++|+++.+|++|+|||..++++|++|||
T Consensus 624 ~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~skm 703 (2005)
T COG5103 624 NQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSKM 703 (2005)
T ss_pred HHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCCC
Q 000192 772 FVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVS 851 (1887)
Q Consensus 772 f~FGi~AL~qF~~RL~EwPqyC~~Ll~ip~L~~~~p~l~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~~ 851 (1887)
|+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-.+.. ..+. .+
T Consensus 704 f~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~---------------- 755 (2005)
T COG5103 704 FSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV---------------- 755 (2005)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc----------------
Confidence 999999999999999999999999999999965 9999998866543 1100 00
Q ss_pred CCCccccccchhhhHHhhhcccccccccccccccccCCCCCCcccCCCCCCcCCCCCCchhhhhcccCCCccccccCCCc
Q 000192 852 GSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGF 931 (1887)
Q Consensus 852 ~~~~~~~~~q~~~~~~~qq~~~~~l~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 931 (1887)
+..+|.-++++.- .|
T Consensus 756 ------------------------------------Eka~p~~pm~pl~-----------------------------~f 770 (2005)
T COG5103 756 ------------------------------------EKANPTHPMLPLE-----------------------------DF 770 (2005)
T ss_pred ------------------------------------cccCCCCcccchh-----------------------------hh
Confidence 0011111111000 01
Q ss_pred cCCCCCccccccccccchhHHHHHhhhcCCCCCCCChhhhHHHhHhhhccCcccHHHHHHHHHHHhhhcchhhhhHHHHH
Q 000192 932 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVM 1011 (1887)
Q Consensus 932 ~~~~~~~~~~~~~~~~ni~tL~~a~e~~~~~i~~P~e~vqDKI~FiiNNls~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~ 1011 (1887)
++-- + +-+...|.-++++..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||.
T Consensus 771 v~~~-----------------v----~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~vt 829 (2005)
T COG5103 771 VRLI-----------------V----KCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVT 829 (2005)
T ss_pred heeE-----------------e----ccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEEE
Confidence 1100 0 001223445677788899999999999999999999999999999999999999
Q ss_pred HhcccCCchhHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcchhcccChHHHHHHHHhHHhHhhhhhhcCcccccCCCC
Q 000192 1012 KRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREID 1091 (1887)
Q Consensus 1012 kRasiEPN~H~LY~~fld~l~~~~L~~~Il~~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~id 1091 (1887)
+|++.|||||+||.++++.++++.||+.+.+.|++.++.||+...- +.+|+++|||||+|||+|||||||||+|+++|
T Consensus 830 qR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~~ 907 (2005)
T COG5103 830 QRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQFD 907 (2005)
T ss_pred eeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCcccccccc
Confidence 9999999999999999999999999999999999999999987643 88999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCceeEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcCCCccccc
Q 000192 1092 PKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT 1171 (1887)
Q Consensus 1092 ~K~LLleaY~~g~L~~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~LL~ELy~~~~LKlnLKFEIEVL~K~L~ldl~di~ 1171 (1887)
||++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++||+||||||+|+|+||++++.||
T Consensus 908 Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~ik 987 (2005)
T COG5103 908 FKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIK 987 (2005)
T ss_pred HHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhh---hcCCCCCCCCccCCCCCcccCCCCcCccCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCc
Q 000192 1172 PTSLLKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGT 1248 (1887)
Q Consensus 1172 ps~~L~~r~~~---~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~ 1248 (1887)
|+..++++.-. +|. ..|+. -++ .+.|.+ ..+++||...
T Consensus 988 Ps~~~~n~~V~ks~LEk---------------e~~Ed------vL~-a~~~d~----------~~~~~qyi~~------- 1028 (2005)
T COG5103 988 PSKSLGNHLVLKSRLEK---------------ELPED------VLN-AKFPDG----------TDYLAQYIIE------- 1028 (2005)
T ss_pred hhhhhCcHHHHHHHHhh---------------hchHH------HHh-hhcccc----------chHHHHHHHH-------
Confidence 99998876421 110 00110 000 000100 0022333210
Q ss_pred chhHHHHhhccCCCCCCcccccccccCCCCCCCccccccCCCCCCceEeecCcccccccchhhhhhHHHHHHHHHHhhhh
Q 000192 1249 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVS 1328 (1887)
Q Consensus 1249 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~rAIrEIi~ 1328 (1887)
. ++.++..|..+. +...| -|.+|++.++|++.+||||+.
T Consensus 1029 -------------------------~--sSq~TvtD~va~-------~~g~P-------~PaiK~~~Qlal~~SVrEI~~ 1067 (2005)
T COG5103 1029 -------------------------D--SSQITVTDLVAR-------HVGSP-------KPAIKNLTQLALDLSVREICG 1067 (2005)
T ss_pred -------------------------h--hhcchHHHHHHH-------HcCCC-------ChHHHHHHHHHHHHHHHHHHH
Confidence 0 001221221111 11223 289999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhHHHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 000192 1329 GIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQA 1408 (1887)
Q Consensus 1329 PVVeRSvtIA~iTT~eLV~KDFA~E~De~kmr~AAh~Mv~~LAgSLAlVTckEPLr~si~~~Lr~~l~~~~~~~~~~eq~ 1408 (1887)
.|||||+.||++||+.|++||||+|.|+.++..||++||++|||+||+|||+|||++.|.++.|+...++......+-++
T Consensus 1068 aVVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~ 1147 (2005)
T COG5103 1068 AVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEK 1147 (2005)
T ss_pred HHHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877666777888
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCccCcccccccccCCCCcCCCCCCCCCHHHH
Q 000192 1409 VQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQ 1487 (1887)
Q Consensus 1409 i~~~v~DNldLac~~IEKaA~eKAi~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~~~~~~~LPe~Lr~k~ggl~~~Q~ 1487 (1887)
+..++++|++.||.+||+++++|++++|+..|+.++..||+||++ ++.||+|+++ +.++++||++|+++-||+||+|+
T Consensus 1148 vd~~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqqf 1226 (2005)
T COG5103 1148 VDKIAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQF 1226 (2005)
T ss_pred HHHHHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHHh
Confidence 999999999999999999999999999999999999999999997 7999999997 55578999999999999999999
Q ss_pred HHHHhhhcCCCCcCCCCCCcccccCccCCCCchhhhhhcccCCCCCCCCCcCCCCCCCcccccCCcccCCCCcccccccc
Q 000192 1488 RVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGF 1567 (1887)
Q Consensus 1488 ~VYEdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~ 1567 (1887)
++||||.|+|-..-++ |....+.-+. ...+++++ . .-|..+... .+.
T Consensus 1227 ~lyE~fD~l~ls~i~~---h~~~~~~n~~----------~Td~adst---------d-----al~~nl~nt------~e~ 1273 (2005)
T COG5103 1227 SLYEDFDRLSLSTIMG---HIEKIAINAI----------DTDSADST---------D-----ALNNNLNNT------VEN 1273 (2005)
T ss_pred hhhhcccccccccccc---ccchhhhhhh----------cCChhhhh---------h-----hhccccchh------hhh
Confidence 9999999976432221 2211111000 00000000 0 000111100 000
Q ss_pred cccccccccccccCcccccccccccccCChhhhhhhcccCCCCCCCCCCCCCCCCCCchhhhhccccccccchhhhhhHH
Q 000192 1568 LSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDK 1647 (1887)
Q Consensus 1568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~le~ 1647 (1887)
-.+|+++..+.. .-. ++ .+..++ +...|..+ +..+.+ |.
T Consensus 1274 eAnQta~~yq~n-----------~L~-i~---~ql~Ql----------~~~~Py~~---~~~V~a-------------D~ 1312 (2005)
T COG5103 1274 EANQTALEYQEN-----------LLI-IK---AQLVQL----------SKKIPYSS---KKNVIA-------------DE 1312 (2005)
T ss_pred HHHHHHHHHHHH-----------hhh-hh---hHHHHh----------cccCCcch---hhcCcc-------------hh
Confidence 000000000000 000 00 000000 01111111 111110 01
Q ss_pred HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhHHH
Q 000192 1648 YHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLV 1727 (1887)
Q Consensus 1648 ~~~~~~~l~~l~~~~~~~~~i~~~i~~i~~~i~~~~~rde~al~~aQkvv~~L~~~~~~~l~~ev~~~lL~~L~~~~~~~ 1727 (1887)
.|.. +.+. . +++..++.+|...|.++ |+.++.++|.+++.|+..+.+++++||+.++||+||++|-++
T Consensus 1313 e~~~---lkE~-----~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~kt 1380 (2005)
T COG5103 1313 EHGL---LKEG-----K-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISFKT 1380 (2005)
T ss_pred hhhH---HHhh-----H-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhHHH
Confidence 1111 1111 1 46677788887777765 899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccccccccHHHHHHHHhhCCCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCCCchh-hhhHHHHH
Q 000192 1728 VKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV-ISELHNLV 1806 (1887)
Q Consensus 1728 ~kevt~wli~s~DerKfNv~vi~~LIr~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~e~~~~-~sdf~~tl 1806 (1887)
+|+|.|||+|+.|.||||+|+|.+|||+||||..|||.+|++.|.+.+ +.++||||.|++.++++|.++. +.||.+||
T Consensus 1381 ~k~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~tL 1459 (2005)
T COG5103 1381 QKEVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFICTL 1459 (2005)
T ss_pred hhhhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999998654 4589999999999999997765 59999998
Q ss_pred HHHH
Q 000192 1807 DALA 1810 (1887)
Q Consensus 1807 eaL~ 1810 (1887)
|.|+
T Consensus 1460 e~la 1463 (2005)
T COG5103 1460 EMLA 1463 (2005)
T ss_pred HHHh
Confidence 8874
No 2
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=100.00 E-value=2.2e-160 Score=1497.66 Aligned_cols=933 Identities=32% Similarity=0.470 Sum_probs=683.3
Q ss_pred hhhhhhhccCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccc
Q 000192 532 KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYM 611 (1887)
Q Consensus 532 k~L~~lL~~~pf~faidLA~lAsrre~L~LekWL~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~ 611 (1887)
.-++.|.|+.||.++++.+.+|+.++++++..||..++.--.+ |..++.-... .++.++.+..+...
T Consensus 82 ~~~~~v~Nm~pn~~~~n~~~la~~~~a~~F~~~l~~~~~~~~~-----~~~~~s~~~~--------~~q~~~~~~~~~~~ 148 (1591)
T KOG1831|consen 82 PGMDIVGNMSPNLEALNIRDLASCFGAVNFSIWLLESLYLMID-----DAVPLSLIIT--------APQEPSFKPWPNER 148 (1591)
T ss_pred CcchhhhhcCcchhhhchHhhhhhcCCCCchhhhcccceeecc-----CCCcccceee--------ccccccCCCChhHH
Confidence 4578899999999999999999999999999999998652211 1112211111 01111111111100
Q ss_pred -hhHHHHHHHHHhhhCCCCchHHHHHHHHHHHHhhccCCCCCCCCCCCC-----CCCCCCchhHHHHHHHHHHHhhccCC
Q 000192 612 -EKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADS-----STSEGYADDIEAEANSYFHQMFSGQL 685 (1887)
Q Consensus 612 -etv~~ll~~L~~~~~~~~s~~l~e~l~~~~~~~l~~~PrL~n~~~~d~-----~~~~~f~~dVE~Ean~yfqkmY~~ei 685 (1887)
.++..++-..... ++-.+..-+++.||. .+..+|++|||+|||+||||||+ .+
T Consensus 149 ~~qi~~l~p~~~~q--------------------~qrt~s~sa~~~~d~v~~~~~~~~~~s~die~E~~sYfqkiYn-~l 207 (1591)
T KOG1831|consen 149 FAQIYFLLPIGPSQ--------------------LQRTESVSAPGPHDPVFFARQVSIEFSRDIEFEVNSYFQKIYN-CL 207 (1591)
T ss_pred HHHHHHHccCChhh--------------------ccccccccCCCCCCchhhhcccccccChhHHHHHHHHHHHHHH-Hh
Confidence 1122221111000 011122224445554 24578999999999999999999 99
Q ss_pred CHHHHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000192 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (1887)
Q Consensus 686 sI~eiv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrFf~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~ILeAlr~ 765 (1887)
+|+++|++|+|||.|.++|||+||+||.|+||||||||++||++||++||+||||||.|+|+++.+||+|+|+|++|++.
T Consensus 208 sI~~vI~lL~rfr~Se~~Rdq~vf~C~~~~lF~EyrFF~dYPe~~L~~Ta~lfGsiI~~~Lls~v~l~la~R~Vl~~l~~ 287 (1591)
T KOG1831|consen 208 SIFQVIDLLQRFRLSELPRDQEVFACAAHNLFEEYRFFRDYPELALATTAVLFGSIIFFVLLSFVELGLALRLVLAALGI 287 (1591)
T ss_pred hHHHHHHHHHhcccccChhhhhHHHHHHhhccccccccccCHHHHHHHHHHhcchhHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccC
Q 000192 766 PADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATS 845 (1887)
Q Consensus 766 p~~skMf~FGi~AL~qF~~RL~EwPqyC~~Ll~ip~L~~~~p~l~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~~q~~~ 845 (1887)
|++||||+||++||.+|+.||.+||+||.+|+.+|++..++|++|++|....- +.. .. ..
T Consensus 288 P~~skl~~Fgv~Al~~frskL~~Yp~yC~~Il~~~~~s~~~~~l~~~I~~~~~---san----a~---~~---------- 347 (1591)
T KOG1831|consen 288 PPSSKLFIFGVQALLPFRSKLLDYPKYCFDILSIPPFSKFRPHLYDSIWETAT---SAN----AT---TR---------- 347 (1591)
T ss_pred CChhHHHHHHHHHHHHHHHHhcchHHHHHHHHhCcchhhccHHHHHHHHhhhh---hcc----CC---Cc----------
Confidence 99999999999999999999999999999999999999999999999977332 110 00 00
Q ss_pred CCCCCCCCCccccccchhhhHHhhhcccccccccccccccccCCCCCCcccCC-CCCCcCCCCCCchhhhhcccCCCccc
Q 000192 846 GNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIG-QPSSVAPLGDTSSAQKLHNAVSAPAM 924 (1887)
Q Consensus 846 ~~~~~~~~~~~~~~~q~~~~~~~qq~~~~~l~~~~~~~~~~~~~~~p~~~s~~-~~~~~~~~~~~~~~~~~~~~p~~~~~ 924 (1887)
...|..+.++ .++.+
T Consensus 348 -------------------------------------------~s~pv~~~~p~~~~av--------------------- 363 (1591)
T KOG1831|consen 348 -------------------------------------------KSDPVRSASPYLDSAV--------------------- 363 (1591)
T ss_pred -------------------------------------------ccccchhccccccccc---------------------
Confidence 0001000000 00000
Q ss_pred cccCCCccCCCCCccccccccccchhHHHHHhhhcCCCCCCCChhhhHHHhHhhhccCcccHHHHHHHHHHHhhhcchhh
Q 000192 925 LSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPW 1004 (1887)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~ni~tL~~a~e~~~~~i~~P~e~vqDKI~FiiNNls~~Nl~~K~~Elk~~L~~~y~~W 1004 (1887)
+.. + ++ .+.+.|||+|+|||+|++||+|+.|+.+|++|+|++|+++||+|
T Consensus 364 -s~~---~-~P-------------------------~n~~~~~e~v~dkilF~lNNlsq~N~~qKvdevk~~ltp~y~~W 413 (1591)
T KOG1831|consen 364 -SKH---V-EP-------------------------KNAEGPPEDVVDKILFPLNNLSQLNFNQKVDEVKEILTPEYYPW 413 (1591)
T ss_pred -ccc---C-Cc-------------------------ccccCCchhhhhhheeeechHhhhhhHHHHHHHHHHcChhhHHH
Confidence 000 0 00 12347999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhcccCCchhHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcchhcccChHHHHHHHHhHHhHhhhhhhcCcc
Q 000192 1005 FAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQV 1084 (1887)
Q Consensus 1005 FA~YLV~kRasiEPN~H~LY~~fld~l~~~~L~~~Il~~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkP 1084 (1887)
||+|+|+||||+|+|||+||.+|++.+++.. | -+||++|||||||||.||||||||
T Consensus 414 fs~YiV~qR~S~E~Nf~~LYskFi~ai~n~~--------t----------------~~dk~~LKNLgsWLG~iTl~rNkP 469 (1591)
T KOG1831|consen 414 FSQYIVTQRVSKEINFHELYSKFISAIKNSV--------T----------------ESDKRLLKNLGSWLGEITLGRNKP 469 (1591)
T ss_pred HHHHHhhhhhhcccchHHHHHHHHHHHhCcc--------c----------------hhHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999982 2 179999999999999999999999
Q ss_pred cccCCCChhHHHHHHHhcCceeEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcC
Q 000192 1085 LRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLG 1164 (1887)
Q Consensus 1085 I~~k~id~K~LLleaY~~g~L~~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~LL~ELy~~~~LKlnLKFEIEVL~K~L~ 1164 (1887)
|++.++|||+||+|||.+|++..|+|||||||+.|.+|+|||||||||||||++|+|+|++||||+|||||||||||+||
T Consensus 470 I~~l~l~~kslLlEaY~sg~ll~VvPFVaKIL~~asksrIFkpPnpW~~gIlklL~ELh~e~d~klnLkFEIEVLlkslN 549 (1591)
T KOG1831|consen 470 IKELDLDFKSLLLEAYGSGRLLPVVPFVAKILEGASKSRIFKPPNPWTMGILKLLAELHQEADLKLNLKFEIEVLLKSLN 549 (1591)
T ss_pred hHHhhhhHHHHHHHHhccCceeecchHHHHHHHhhhhccccCCCCchHHHHHHHHHHhcccccceeeeeeeeeehhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccccchhhh--cCCCCCCCCccCCCCCcccCCCCcCccCCCCCCCCCCCCCCCCCCCCCccccccccccc
Q 000192 1165 VDMKDITPTSLLKDRKREI--EGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPL 1242 (1887)
Q Consensus 1165 ldl~di~ps~~L~~r~~~~--~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~ 1242 (1887)
+++++++|+.+++|..+.- -+.++ +...|.+ +++..
T Consensus 550 ~~l~~le~~~~lnn~~~i~~~L~~~~-----~e~h~~~----------------~~~~~--------------------- 587 (1591)
T KOG1831|consen 550 VILSELEPSETLNNIIRIKKQLVLMK-----LETHQSL----------------ELEDI--------------------- 587 (1591)
T ss_pred chHhhcchhhHHhhHHhHHHHHccCC-----hhhcccc----------------ccCch---------------------
Confidence 9999999999999944310 01100 0000000 00000
Q ss_pred ccccCcchhHHHHhhccCCCCCCcccccccccCCCCCCCcccccc-CCCCCCceEeecCcccccccchhhhhhHHHHHHH
Q 000192 1243 RLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLST-PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDR 1321 (1887)
Q Consensus 1243 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~i~~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~r 1321 (1887)
+++++. ++ ..|++++... ...++..++...| ||++|++|+.|+++
T Consensus 588 ----------------------q~~~~~---~~--~~fa~~~~n~~t~~~~i~~l~~~~-------~P~~Kh~~~~Aleq 633 (1591)
T KOG1831|consen 588 ----------------------QQVTLG---NT--IAFAYDARNVSTATEVIKQLDLRP-------HPDIKHRVQEALEQ 633 (1591)
T ss_pred ----------------------hccccc---CC--ccceecccccchhhhhhhhccCCC-------CccHHHHHHHHHHH
Confidence 000000 00 1144444321 1122223333333 89999999999999
Q ss_pred HHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhHHHHHchHHHHHHHHHHHHHHhhcCCCc
Q 000192 1322 AIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIA 1401 (1887)
Q Consensus 1322 AIrEIi~PVVeRSvtIA~iTT~eLV~KDFA~E~De~kmr~AAh~Mv~~LAgSLAlVTckEPLr~si~~~Lr~~l~~~~~~ 1401 (1887)
+|+|||.||||||+.||++||+.||+||||+|+||+|||.||+.|||+||++||++||||||+++|+++|+..+.++...
T Consensus 634 sv~eii~~Vv~rs~~IA~ttTe~lirKDFA~e~~es~l~~Aa~~M~r~la~~lAmiTcreplk~am~~nl~~~~~~~l~~ 713 (1591)
T KOG1831|consen 634 SVVEIIEPVVERSSGIASTTTESLIRKDFALERDESRLRLAASQMVRELAAGLAMITCREPLKVAMSSNLVLAALSLLSL 713 (1591)
T ss_pred HHHHHHHHHHHHhhceeehhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766556
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCccCcccccccccCCCCcCCCCCC
Q 000192 1402 SELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPG 1480 (1887)
Q Consensus 1402 ~~~~eq~i~~~v~DNldLac~~IEKaA~eKAi~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~~~~~~~LPe~Lr~k~g 1480 (1887)
...+++++..+++||++++|.+|||+|+|||+.|||.+|++.+..|+.||++ ++.+|+|+....+. ..|||++|+++|
T Consensus 714 ~~ai~~a~~t~~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~-~~LP~~vr~~~~ 792 (1591)
T KOG1831|consen 714 MAAIARAADTLQSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYS-CTLPEVVRLKIG 792 (1591)
T ss_pred HHHHHHHHHHHHhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhh-ccCcHhhhcccC
Confidence 7889999999999999999999999999999999999999999999999997 69999999886665 449999999999
Q ss_pred CCCHHHHHHHHhhhc-CCCC-cCCCCCCcccccCccCCCCchhhhhhcccCCCCCCCCCcCCCCCCCcccccCCcccCCC
Q 000192 1481 HLSVSQQRVYEDFVR-LPWQ-NQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASG 1558 (1887)
Q Consensus 1481 gl~~~Q~~VYEdF~r-~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 1558 (1887)
|++|+|++|||+|+| +|+. ..++.+.+.. | .+.+.++.+.
T Consensus 793 ~~~~~l~~vYe~F~k~i~~~~~~s~~~~la~----------------~----------------------~~~~~dlt~~ 834 (1591)
T KOG1831|consen 793 GLTPQLFRVYEEFPKPIPGFLGNSSRKDLAE----------------Y----------------------ITESSDLTQP 834 (1591)
T ss_pred CCCHHHHHHHHHcccccccccccCCCccccc----------------c----------------------cCCCccccch
Confidence 999999999999998 5551 1111110000 0 1111111110
Q ss_pred CcccccccccccccccccccccCcccccccccccc-cCChhhhhhhcccCCCCCCCCCCCCCCCCCCchhhhhccccccc
Q 000192 1559 TTESTSAGFLSTSLVHIGAADGGILHNSESESVNA-AFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEP 1637 (1887)
Q Consensus 1559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1637 (1887)
...+.......+ ++.+++ ... ++..++.+
T Consensus 835 -------~~~s~~~~lv~~------ei~~~~-~~~a~~~~i~~~------------------------------------ 864 (1591)
T KOG1831|consen 835 -------HVISNALDLVVR------EICGAI-VEKACQTAIQTG------------------------------------ 864 (1591)
T ss_pred -------hhhhHHHHHHHH------HHHHHH-HHHHHHHHHHhh------------------------------------
Confidence 000000000000 000000 000 00000000
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhccChhHHHHHHHH--HHHHHhhccCCCchhHHHHHH
Q 000192 1638 SLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQ--KVFKGLYENASNNLHFSAHLA 1715 (1887)
Q Consensus 1638 ~l~~~~~le~~~~~~~~l~~l~~~~~~~~~i~~~i~~i~~~i~~~~~rde~al~~aQ--kvv~~L~~~~~~~l~~ev~~~ 1715 (1887)
+++.-++.++.+....+.++......+....+..++. ..-.+-.+.+ +.+...+ .. +--.++...
T Consensus 865 ---------~l~~~a~s~~~~m~~v~~~~~~~~~~~~~~~~~ar~i-~hli~~~V~~~~~~l~~~~--~~-~~I~~i~m~ 931 (1591)
T KOG1831|consen 865 ---------MLQFKAQSVEKLMEEVPARNMVVNLVNSLLLLVARSI-EHLISGLVSYFMKNLELDF--ST-EKIFKIIME 931 (1591)
T ss_pred ---------hhhhhhhcchhhHHhccchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh--cc-hhHHHHHHH
Confidence 0001111111110000111111111111111111100 0000111122 1222222 12 223456677
Q ss_pred HHHHHHHHhHH-HHHHHHhhhccccccccccHHHHHHHHhhCCCChhhHHHHHHHHHhcCCCccHHHHHHHHHHHHhcCC
Q 000192 1716 ILAAIRDVCKL-VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDE 1794 (1887)
Q Consensus 1716 lL~~L~~~~~~-~~kevt~wli~s~DerKfNv~vi~~LIr~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~~e 1794 (1887)
+|+-+|....+ ..+.|+-.+..+++++|||++.+..|++.+|++..++|.||+++|++|.|..++.|+++|++....++
T Consensus 932 iL~~ic~~~qk~~~~~vs~a~s~~~~~~e~n~~~~~~L~~~~l~~~~~vd~~l~~amDs~~n~~vi~f~iell~~~~~~d 1011 (1591)
T KOG1831|consen 932 ILDNICRFIQKAGVRKVSEAISSSRSSLEYNIEKAEHLILSLLLDSGHVDKHLAKAMDSGGNQEVIAFLIELLRIAYGGD 1011 (1591)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhchHHHHhhHHHHHHHHHHhccChhhHHHHHHHHhccCCChHHHHHHHHHHHHhccCc
Confidence 77788877644 44457777779999999999999999999999999999999999999999999999999999999999
Q ss_pred Cchh-h--hhHHHHHHHHHHHHh
Q 000192 1795 SRVV-I--SELHNLVDALAKLAA 1814 (1887)
Q Consensus 1795 ~~~~-~--sdf~~tleaL~~~~~ 1814 (1887)
.++. . ..|..|-|.+.|+-+
T Consensus 1012 nvi~~~~~~~~~~t~E~~~ri~q 1034 (1591)
T KOG1831|consen 1012 NVIADEWKNLFKETKEELFRILQ 1034 (1591)
T ss_pred chhhhhhhhhhhhHHHHHHHHHH
Confidence 7643 3 578889999999655
No 3
>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human. It affects genes positively and negatively and is thought to regulate transcription factor IID function. In Saccharomyces cerevisiae, it exists in two prominent forms and consists of at least nine core subunits: the five Not proteins (Not1p to Not5p), Caf1p, Caf40p, Caf130p and Ccr4p []. The Ccr4-Not complex regulates many different cellular functions, including RNA degradation and transcription initiation. It may be a regulatory platform that senses nutrient levels and stress []. Caf1p and Ccr4p, are directly involved in mRNA deadenylation, and Caf1p is associated with Dhh1p, a putative RNA helicase thought to be a component of the decapping complex []. Pop2, a component of the Ccr4-Not complex, functions as a deadenylase []. This entry represents a domain of unknown function found in the Not1 subunit of the CCR4-Not complex.
Probab=100.00 E-value=2.8e-46 Score=397.34 Aligned_cols=145 Identities=56% Similarity=0.809 Sum_probs=140.2
Q ss_pred chhhhhhHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhHHHHHchHHHHHHH
Q 000192 1308 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSI 1387 (1887)
Q Consensus 1308 ~p~Lk~iv~~Ai~rAIrEIi~PVVeRSvtIA~iTT~eLV~KDFA~E~De~kmr~AAh~Mv~~LAgSLAlVTckEPLr~si 1387 (1887)
||+||++|+.|+||||||||.|||||||+||++||++||+||||+|+||++||+|||+||++||||||+|||||||+.+|
T Consensus 1 ~p~lk~~v~~Al~rai~Eii~pvveRsv~IA~~Tt~~LV~KDFa~E~De~~~r~aa~~Mv~~LA~sLalvTcrepL~~~i 80 (147)
T PF12842_consen 1 HPQLKRIVQNALDRAIREIISPVVERSVTIASITTEELVKKDFATEPDENKMRRAAHNMVRSLAGSLALVTCREPLRESI 80 (147)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-CC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000192 1388 SSQLRNSLQGL-TI-ASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHRE 1452 (1887)
Q Consensus 1388 ~~~Lr~~l~~~-~~-~~~~~eq~i~~~v~DNldLac~~IEKaA~eKAi~eIde~l~~~~~~RRkhre 1452 (1887)
.+|||+++++. +. .++++|++++++++||+||||++|||+|+|||+++||++|+++|+.||+|||
T Consensus 81 ~~~l~~~l~~~~~~~~~~~~e~~i~~~~~dNlel~~~~Iek~a~eka~~~id~~l~~~~~~R~~~re 147 (147)
T PF12842_consen 81 QNNLRSLLSQLNGSTEQELPEQAIQQIVNDNLELACAFIEKAAMEKAIKEIDERLEPEIELRRRHRE 147 (147)
T ss_pred HHHHHHHHHhhcCCchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999843 33 4689999999999999999999999999999999999999999999999986
No 4
>KOG1831 consensus Negative regulator of transcription [Transcription]
Probab=97.56 E-value=0.013 Score=79.13 Aligned_cols=294 Identities=22% Similarity=0.264 Sum_probs=185.4
Q ss_pred HHHhcccCCchhHHHHHHHHHhCChhHHHHHHHHHHH-HHHHHhcchhcccChHHHHHHHHhHHhHhhhhhhcCcccccC
Q 000192 1010 VMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYE-NCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAR 1088 (1887)
Q Consensus 1010 V~kRasiEPN~H~LY~~fld~l~~~~L~~~Il~~Ty~-~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k 1088 (1887)
+.|==..|++=..||+.+... .+.|-+-+...|.+ -+++..++.. ++..-|+ =.+..|.++-+..-
T Consensus 658 irKDFA~e~~es~l~~Aa~~M--~r~la~~lAmiTcreplk~am~~nl-------~~~~~~~----l~~~~ai~~a~~t~ 724 (1591)
T KOG1831|consen 658 IRKDFALERDESRLRLAASQM--VRELAAGLAMITCREPLKVAMSSNL-------VLAALSL----LSLMAAIARAADTL 724 (1591)
T ss_pred HHHHHhcccchhHHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHhhH-------HHHHhhh----hHHHHHHHHHHHHH
Confidence 444455788888888887655 34455555555554 2333333221 1111111 11577888888888
Q ss_pred CCChhHHHHHHHhcCceeEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcCCCcc
Q 000192 1089 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMK 1168 (1887)
Q Consensus 1089 ~id~K~LLleaY~~g~L~~VIPFVcKVLe~~~~SkVFkPPNPWtm~IL~LL~ELy~~~~LKlnLKFEIEVL~K~L~ldl~ 1168 (1887)
--|.+.+.+.-.++-++.-.+-++.+-|++..--+||.+.|||.|.++-.+.+.|++- |.- -+++++.
T Consensus 725 ~~dNv~l~~~~Iek~a~eka~~dI~~~L~q~~~~Rv~~k~~~~~~~fvD~~~~~~~~~-LP~-----------~vr~~~~ 792 (1591)
T KOG1831|consen 725 QSDNVELVVKFIEKTAIEKATQDIDSRLEQDICGRVFHKENPEVMPFVDLLSAAYSCT-LPE-----------VVRLKIG 792 (1591)
T ss_pred HhhchhhHhhhhHHHHHHHHHHHHHHHHHHhhHhheecccCCccccchhhhhhhhhcc-CcH-----------hhhcccC
Confidence 8889999999999999999999999999999999999999999999999999999975 322 2222222
Q ss_pred ccccccccccchhhhcCCCCCCCCccCCCCCcccCCCCcCccCCCCCCCCCCCCCCCCCCCCCcccccccccccccccCc
Q 000192 1169 DITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGT 1248 (1887)
Q Consensus 1169 di~ps~~L~~r~~~~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~~ 1248 (1887)
.+.|.-+ +-.++ |. ...++ .++
T Consensus 793 ~~~~~l~-----~vYe~---F~---------k~i~~-----------------------------~~~------------ 814 (1591)
T KOG1831|consen 793 GLTPQLF-----RVYEE---FP---------KPIPG-----------------------------FLG------------ 814 (1591)
T ss_pred CCCHHHH-----HHHHH---cc---------ccccc-----------------------------ccc------------
Confidence 2222110 00000 00 00000 000
Q ss_pred chhHHHHhhccCCCCCCcccccccccCCCCCCCccccccCCCCCCceEeecCcccccccchhhhhhHHHHHHHHHHhhhh
Q 000192 1249 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVS 1328 (1887)
Q Consensus 1249 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~rAIrEIi~ 1328 (1887)
+ ...+++..++.-+..+. -...+..+.+-..+||.+
T Consensus 815 -----------~--------------------------s~~~~la~~~~~~~dlt-------~~~~~s~~~~lv~~ei~~ 850 (1591)
T KOG1831|consen 815 -----------N--------------------------SSRKDLAEYITESSDLT-------QPHVISNALDLVVREICG 850 (1591)
T ss_pred -----------c--------------------------CCCcccccccCCCcccc-------chhhhhHHHHHHHHHHHH
Confidence 0 00000001110011000 124568899999999999
Q ss_pred hcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhHHHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 000192 1329 GIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQA 1408 (1887)
Q Consensus 1329 PVVeRSvtIA~iTT~eLV~KDFA~E~De~kmr~AAh~Mv~~LAgSLAlVTckEPLr~si~~~Lr~~l~~~~~~~~~~eq~ 1408 (1887)
-+++|+...|..+.+ +-.|-+.+++--..+ -|.+|+-+++.|+..+.. +++..-|..|.-....++.. .-.-+-
T Consensus 851 ~~~~~a~~~~i~~~~-l~~~a~s~~~~m~~v--~~~~~~~~~~~~~~~~~a-r~i~hli~~~V~~~~~~l~~--~~~~~~ 924 (1591)
T KOG1831|consen 851 AIVEKACQTAIQTGM-LQFKAQSVEKLMEEV--PARNMVVNLVNSLLLLVA-RSIEHLISGLVSYFMKNLEL--DFSTEK 924 (1591)
T ss_pred HHHHHHHHHHHHhhh-hhhhhhcchhhHHhc--cchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--hhcchh
Confidence 999998888888887 778888888776665 578999999999988777 66666666655442222211 111122
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000192 1409 VQLVTNDNLDLGCAVIEQAATDKAIQTI 1436 (1887)
Q Consensus 1409 i~~~v~DNldLac~~IEKaA~eKAi~eI 1436 (1887)
|..++-.|++.+|.+++|++..|...-|
T Consensus 925 I~~i~m~iL~~ic~~~qk~~~~~vs~a~ 952 (1591)
T KOG1831|consen 925 IFKIIMEILDNICRFIQKAGVRKVSEAI 952 (1591)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 5678889999999999999988655444
No 5
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=93.15 E-value=0.9 Score=50.81 Aligned_cols=181 Identities=20% Similarity=0.249 Sum_probs=119.8
Q ss_pred HHHhHhhhccCcccHHHHHHHHHHHhhhc--chhhhhHHHHHHhcccCCchhHHHHHHHHHhCC--hhHHHHHHHHHHHH
Q 000192 972 DKISFIINNISALNVEAKAKEFTEILKEQ--YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQATYEN 1047 (1887)
Q Consensus 972 DKI~FiiNNls~~Nl~~K~~Elk~~L~~~--y~~WFA~YLV~kRasiEPN~H~LY~~fld~l~~--~~L~~~Il~~Ty~~ 1047 (1887)
.+|.-++|-+|.+|++.-++|+.++.... ...-+... +++++-.+|+|-.+|..++..++. +.+-..+++.++..
T Consensus 2 ~~v~~~lnkLs~~n~~~~~~~l~~~~~~~~~~~~~l~~~-i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~~ 80 (200)
T smart00543 2 KKVKGLINKLSPSNFESIIKELLKLNNSDKNLRKYILEL-IFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQEE 80 (200)
T ss_pred hHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHH-HHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999888653 23333333 567799999999999999999986 56778888888877
Q ss_pred HHHHhcchhcccChHHHHHHHHhHHhHhhhhhhcCcccccCCCChhHHHHHHHhcCce------eEEechhhhcccccCC
Q 000192 1048 CKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLM------IAVIPFTSKILEPCQS 1121 (1887)
Q Consensus 1048 i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~id~K~LLleaY~~g~L------~~VIPFVcKVLe~~~~ 1121 (1887)
....+... ...++...+|+--+||.+..-+=-+.. .+.++|-+--....- ..-|=.+|.+|+.|..
T Consensus 81 f~~~~e~~----~~~~~~~~~~~i~fl~eL~~~~~i~~~----~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~ 152 (200)
T smart00543 81 FEKGLESE----EESDKQRRLGLVRFLGELYNFQVLTSK----IILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGK 152 (200)
T ss_pred HHHHHHHH----HHHhhhhHHhHHHHHHHHHHcccCcHH----HHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhH
Confidence 76654332 335667778888888888765433322 122222222222111 1344567788888766
Q ss_pred CccccCCCccHHH-HHHHHHHHhcCC---ccchhhHHHHHHHHhh
Q 000192 1122 SLAYQPPNPWTMA-ILGLLAEIYSMP---NLKMNLKFDIEVLFKN 1162 (1887)
Q Consensus 1122 SkVFkPPNPWtm~-IL~LL~ELy~~~---~LKlnLKFEIEVL~K~ 1162 (1887)
.--+ +.+|=.|. ++..+....... .+....+|-++-|+.-
T Consensus 153 ~l~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~r~~~~l~~l~~l 196 (200)
T smart00543 153 DLER-EKSPKLLDEILERLQDYLLKKDKTELSSRLRFMLELLIEL 196 (200)
T ss_pred HHcC-cccHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHH
Confidence 5433 55655554 445555555555 5777788888877653
No 6
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=84.25 E-value=3.9 Score=45.66 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=79.7
Q ss_pred HHhHhhhccCcccHHHHHHHHHHHhhhcchhhhhHHH---HHHhcccCCchhHHHHHHHHHhCC--h-hHHHHHHHHHHH
Q 000192 973 KISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYM---VMKRASIEPNFHDLYLKFLDKVNS--K-ALNREIVQATYE 1046 (1887)
Q Consensus 973 KI~FiiNNls~~Nl~~K~~Elk~~L~~~y~~WFA~YL---V~kRasiEPN~H~LY~~fld~l~~--~-~L~~~Il~~Ty~ 1046 (1887)
||.-++|-+|..|++.-++++.+..... .++...++ +.++|..+|+|..+|..++..+.. + .+-..+++.+++
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~-~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~ 81 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSD-DPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQE 81 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 6788999999999999999999998776 33443333 356799999999999999999874 3 566667766666
Q ss_pred HHHHHh-cchhcccChHHHHHHHHhHHhHhhhhhhc
Q 000192 1047 NCKVLL-GSELIKSSSEERSLLKNLGSWLGKLTIGR 1081 (1887)
Q Consensus 1047 ~i~~LL-~se~~~~~s~eRslLKNLGsWLG~iTLar 1081 (1887)
.+.... ..+.......++...+|+.-+||.+....
T Consensus 82 ~f~~~~~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~ 117 (209)
T PF02854_consen 82 EFEERYSNEELEENRQSSKQRRRGNIRFLAELFNFG 117 (209)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhhhhhHHHhhHhhc
Confidence 555411 01222345677888899999999887653
No 7
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=83.40 E-value=3.6 Score=52.06 Aligned_cols=119 Identities=22% Similarity=0.271 Sum_probs=88.6
Q ss_pred hhhcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhHHHHHchHHHHHHHHHHHHHHhhc---CC---C
Q 000192 1327 VSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQG---LT---I 1400 (1887)
Q Consensus 1327 i~PVVeRSvtIA~iTT~eLV~KDFA~E~De~kmr~AAh~Mv~~LAgSLAlVTckEPLr~si~~~Lr~~l~~---~~---~ 1400 (1887)
|.-.--| -||++-+-+.|.|||-+++.. .-.|.|...+.+=+++.|---||-.||.|-+|-+=.. +. +
T Consensus 249 I~GsnaR--CIa~L~afqevi~Dy~TP~~k----tlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~ 322 (556)
T KOG1467|consen 249 ISGSNAR--CIAMLQAFQEVIKDYTTPPEK----TLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLS 322 (556)
T ss_pred cCCccHH--HHHHHHHHHHHHHhccCCCcc----ccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCC
Confidence 4444444 499999999999999999987 4668888888888887765579999999999966322 22 1
Q ss_pred c---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhh
Q 000192 1401 A---SELLEQAVQLVTNDNLDLGCAVIEQAATDKAI-----------QTIDGEIAQQLSLRRKHR 1451 (1887)
Q Consensus 1401 ~---~~~~eq~i~~~v~DNldLac~~IEKaA~eKAi-----------~eIde~l~~~~~~RRkhr 1451 (1887)
+ ++.+-..|..-+++++.+|-..|-+.|.+|.- .-+...|..+.+.+++.|
T Consensus 323 e~eaKe~L~~~I~~~i~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~fr 387 (556)
T KOG1467|consen 323 ESEAKEELQSDIDRFIAEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFR 387 (556)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceE
Confidence 1 45555668888999999999999999999853 234555666665444444
No 8
>COG5088 SOH1 Rad5p-binding protein [General function prediction only]
Probab=52.14 E-value=32 Score=35.31 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHhhhcchhhhhHHHHHHhcccCCchhHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcchhcccChHH
Q 000192 984 LNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEE 1063 (1887)
Q Consensus 984 ~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LY~~fld~l~~~~L~~~Il~~Ty~~i~~LL~se~~~~~s~e 1063 (1887)
+-+|-.++=+.-+-.+.|..|+++.=.-+ -..-.-|++.++--.+|+.-++|+--+.--|-.||++......-+|
T Consensus 15 sRFE~ELEFvQ~L~Np~Yl~~Ltq~~~fe-----se~F~~YL~YlEYWr~PeYs~fivYP~CL~iL~lLn~~~~~~~vs~ 89 (114)
T COG5088 15 SRFEVELEFVQSLANPQYLTLLTQQQIFE-----SENFKNYLKYLEYWRNPEYSQFIVYPNCLFILKLLNGFMESAIVSE 89 (114)
T ss_pred chhHHHHHHHHHhcCHHHHHHHHHhhhhc-----CHHHHHHHHHHHHhhCCcccceeechhHHHHHHHhcchhHhhhhhh
Confidence 44444444444444678888887754443 3344569999999999999999987777777788998888777889
Q ss_pred HHHHHHhH-----HhHhhh
Q 000192 1064 RSLLKNLG-----SWLGKL 1077 (1887)
Q Consensus 1064 RslLKNLG-----sWLG~i 1077 (1887)
-.++|.|| -|||+.
T Consensus 90 ~~l~~~l~e~qy~~Wlnk~ 108 (114)
T COG5088 90 DGLLEGLDELQYPQWLNKM 108 (114)
T ss_pred hHHHHhhhHHHHHHHHHHH
Confidence 99999998 488865
No 9
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.93 E-value=1.2e+02 Score=31.11 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHhhhhhccchh
Q 000192 671 AEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHL 750 (1887)
Q Consensus 671 ~Ean~yfqkmY~~eisI~eiv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrFf~~YP~~eL~~TA~LFG~lI~~~Lv~~~ 750 (1887)
++++...+-.++. -..+|.+..+++++-+ ....++..-+|+..+|+ =..+-..++.|+..+++.++++..
T Consensus 3 k~i~~~l~ey~~~-~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~-------~~~~r~~~~~Ll~~L~~~~~~~~~ 72 (113)
T PF02847_consen 3 KKIFSILMEYFSS-GDVDEAVECLKELKLP--SQHHEVVKVILECALEE-------KKSYREYYSKLLSHLCKRKLISKE 72 (113)
T ss_dssp HHHHHHHHHHHHH-T-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTS-------SHHHHHHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHhcCCCCHH
Confidence 3344444444433 3678888888888666 56677888888888887 345566699999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 000192 751 TLGIALRGVLDALRK 765 (1887)
Q Consensus 751 ~L~iALr~ILeAlr~ 765 (1887)
.+.-|+.-+++.+..
T Consensus 73 ~~~~gf~~~l~~l~D 87 (113)
T PF02847_consen 73 QFQEGFEDLLESLED 87 (113)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhh
Confidence 988888888776654
No 10
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=35.79 E-value=98 Score=30.60 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHhhhhhchHHHHHHHHHHHHhcccchhHHHHhhhhccccCCCCCCChhhHHHHH
Q 000192 7 TVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVA 70 (1887)
Q Consensus 7 ~~~~qI~~Lv~~l~k~n~~~~~~el~qlv~~G~ea~~~lLr~~l~~~~~~~~~~k~~~~~~LL~ 70 (1887)
+...+|+.+++.+-++||+..+..+.+++.-|+.+. .+++.+.+.+--. +.++..|..++.
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~~--~~~~~~k~~i~~ 63 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSAS-DILKQLHEVLVES--DIPDSQKAEILK 63 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHTS--TSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHh--hccHHHHHHHHH
Confidence 356889999999999999999999999997699888 5666777765333 345666665543
No 11
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=26.21 E-value=1.5e+02 Score=38.78 Aligned_cols=173 Identities=20% Similarity=0.288 Sum_probs=104.5
Q ss_pred hhhhHHHhHhhhccCcccHHHHHHHHHHHhhhcchh---hhhHHHHHHhcccCCchhHHHHHHHHHhCCh--hHHHHHHH
Q 000192 968 SEVQDKISFIINNISALNVEAKAKEFTEILKEQYYP---WFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--ALNREIVQ 1042 (1887)
Q Consensus 968 e~vqDKI~FiiNNls~~Nl~~K~~Elk~~L~~~y~~---WFA~YLV~kRasiEPN~H~LY~~fld~l~~~--~L~~~Il~ 1042 (1887)
|.+.-+|.=+|||+..+|+..-+.|| ++++.-. -|. -=||+=-+--|||-.+|..++.-||++ .+=..+++
T Consensus 162 EalkksInglInkvn~sNi~~ii~eL---fqeNiirgRgl~c-rsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlk 237 (739)
T KOG2140|consen 162 EALKKSINGLINKVNASNIQEIIREL---FQENIIRGRGLLC-RSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLK 237 (739)
T ss_pred HHHHHHhHHHHhhhhHHHHHHHHHHH---HHHHHHhccchhH-HHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHH
Confidence 46788999999999999997665554 4443221 111 125666677899999999999999987 33344444
Q ss_pred HHHHHHHHHhcchhcccChHHHHHHHHhHHhHhhhhhhcCcccccCCCChh--HHHHHHHhcCceeEEechh----hhcc
Q 000192 1043 ATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPK--SLIIEAYEKGLMIAVIPFT----SKIL 1116 (1887)
Q Consensus 1043 ~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~id~K--~LLleaY~~g~L~~VIPFV----cKVL 1116 (1887)
....+.+.=. .-+|+...-|--.++..+ -|+-+-|.-+.+. -||+|-=....+.++|-|+ +|..
T Consensus 238 rLilqf~r~f-------~RnDk~~c~~~~kfiahL---inq~VahEIv~Leil~lLLe~PTddSvevaI~flkecGakL~ 307 (739)
T KOG2140|consen 238 RLILQFKRSF-------RRNDKVSCLNASKFIAHL---INQQVAHEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLA 307 (739)
T ss_pred HHHHHHHHHh-------cccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 4333332222 123444444444443333 2444455544443 3344433335566777765 2333
Q ss_pred cccCCCccccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhc
Q 000192 1117 EPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNL 1163 (1887)
Q Consensus 1117 e~~~~SkVFkPPNPWtm~IL~LL~ELy~~~~LKlnLKFEIEVL~K~L 1163 (1887)
+=... =.-+|..=|.=|-|..+|-=.+.|=||+||.-=
T Consensus 308 ~VSpr---------~~n~IfErlR~ILhe~Eld~rvqy~iEtlf~iR 345 (739)
T KOG2140|consen 308 EVSPR---------ALNGIFERLRYILHEGELDRRVQYMIETLFQIR 345 (739)
T ss_pred HhChH---------HHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 22211 134677778888888899999999999999643
No 12
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.69 E-value=1.9e+02 Score=29.92 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcC
Q 000192 686 TIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRK 765 (1887)
Q Consensus 686 sI~eiv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrFf~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~ILeAlr~ 765 (1887)
..+|.+..+++++.+ ....++....|+--+||- .++-..++.|+..+.+.++++...+.-|+.-+++.+.+
T Consensus 17 D~~ea~~~l~~L~~~--~~~~~vv~~~i~~~le~~-------~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~d 87 (113)
T smart00544 17 DTDEAVHCLLELKLP--EQHHEVVKVLLTCALEEK-------RTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIED 87 (113)
T ss_pred CHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCC-------ccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChh
Confidence 678888888888766 377889999999989982 34566699999999999999999999999988888875
No 13
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=24.51 E-value=1.5e+02 Score=36.28 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=44.2
Q ss_pred hccCCChHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHhhccch
Q 000192 121 LSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDL 170 (1887)
Q Consensus 121 L~~S~n~e~r~~a~~f~~~~i~eL~~n~~~~~s~e~lh~il~~l~~~~~l 170 (1887)
+-.-+|.++...|++|+...+.+.+..--..+|+|+||.|+.++...+-|
T Consensus 111 ~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ee~L 160 (333)
T KOG3769|consen 111 NPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLGEEVL 160 (333)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhhHHHH
Confidence 55678999999999999999999998888999999999999998775543
No 14
>PRK00218 putative lysogenization regulator; Reviewed
Probab=21.64 E-value=2e+02 Score=33.71 Aligned_cols=101 Identities=23% Similarity=0.386 Sum_probs=64.6
Q ss_pred HHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhc---CC
Q 000192 690 MVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALR---KP 766 (1887)
Q Consensus 690 iv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrFf~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~ILeAlr---~p 766 (1887)
.|+.+.+-... |.+-|.|+|++||.- +| ..|..+||+ +. .|..+|+.+.+.|. ++
T Consensus 21 lV~qlA~~G~~----d~~~~~~~l~Sll~~------~p----~st~~VyG~-~~-------~L~~Gl~~L~~~L~~~~~~ 78 (207)
T PRK00218 21 LVQQLARTGQC----DEDALETSLNSLLVT------NP----SSTLDVYGG-EA-------NLRLGLETLLNQLNSSRQG 78 (207)
T ss_pred HHHHHHHcCCC----CHHHHHHHHHHHHhc------CC----CCHHHHhCC-cH-------HHHHHHHHHHHHHccCCCC
Confidence 34444443333 467899999999974 44 457789998 22 27788888888886 33
Q ss_pred CCCc--ccchHHHHHHHHHHhhhhhhHHHHHHhc--------ccccccccHHHHHHHHH
Q 000192 767 ADSK--MFVFGTKALEQFVDRLIEWPQYCNHILQ--------ISHLRSTHAELVAFIER 815 (1887)
Q Consensus 767 ~~sk--Mf~FGi~AL~qF~~RL~EwPqyC~~Ll~--------ip~L~~~~p~l~~~i~~ 815 (1887)
.+.. -|.+|+.+||+ ||.-=|..-..|.+ ..||.-.|+.++..+-.
T Consensus 79 ~~~el~RY~~~ll~LEr---kL~k~~~~~~~L~~ri~~~~rQ~~hf~~~~~~via~lA~ 134 (207)
T PRK00218 79 LDAELTRYALSLLALER---KLSKNPDALNTLGERINQIQRQLEHFDLLHENVIANLAG 134 (207)
T ss_pred cchHHHHHHHHHHHHHH---HHccCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3333 46677777765 55556666555432 35676678877775533
No 15
>PF15256 SPATIAL: SPATIAL
Probab=20.95 E-value=80 Score=36.60 Aligned_cols=41 Identities=20% Similarity=0.546 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhHH-HHHHHHhhhccccccccccHHHHHHHHhhCC
Q 000192 1714 LAILAAIRDVCKL-VVKELTSWVIYSDEERKFNRDITMGLIRSEL 1757 (1887)
Q Consensus 1714 ~~lL~~L~~~~~~-~~kevt~wli~s~DerKfNv~vi~~LIr~~L 1757 (1887)
+.||+.||++=.- --.+|-.||+|+.+.-| +.+.+||.+.|
T Consensus 154 i~ILe~Lc~ILqTDSL~~vq~WLl~A~~kEK---~lv~~Li~ta~ 195 (196)
T PF15256_consen 154 IKILELLCQILQTDSLSAVQQWLLSASDKEK---ELVSGLIQTAL 195 (196)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCChhhH---HHHHHHHHHhh
Confidence 4578888887421 23578899999998744 88999987643
Done!