Query 000192
Match_columns 1887
No_of_seqs 206 out of 265
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 00:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gmj_A CCR4-NOT transcription 100.0 3.3E-82 1.1E-86 704.0 20.4 218 966-1183 3-222 (229)
2 4b89_A General negative regula 100.0 3.9E-82 1.3E-86 706.5 16.4 219 961-1181 25-243 (249)
3 4b8b_A General negative regula 100.0 1.7E-79 5.8E-84 748.7 34.1 485 314-821 89-599 (603)
4 3rk6_A Polyadenylate-binding p 81.2 3.8 0.00013 46.8 9.0 187 967-1161 16-232 (234)
5 2vso_E Eukaryotic initiation f 76.8 8.2 0.00028 45.1 10.2 194 965-1161 31-275 (284)
6 1hu3_A EIF4GII; heat repeat, t 70.5 6.4 0.00022 45.4 7.2 187 968-1161 9-235 (260)
7 2rg8_A Programmed cell death p 32.4 1.9E+02 0.0065 31.0 10.2 89 666-765 6-94 (165)
8 1h2v_C 80 kDa nuclear CAP bind 28.4 1.3E+02 0.0046 39.9 9.7 106 966-1079 4-117 (771)
9 2ion_A PDCD4, programmed cell 26.7 2.5E+02 0.0086 29.7 9.8 90 667-765 6-95 (152)
10 2nsz_A Programmed cell death p 24.1 3.3E+02 0.011 27.9 9.8 90 667-765 4-93 (129)
11 3rk6_A Polyadenylate-binding p 21.9 8.8E+02 0.03 27.2 14.0 45 1745-1789 131-186 (234)
No 1
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=100.00 E-value=3.3e-82 Score=704.02 Aligned_cols=218 Identities=48% Similarity=0.855 Sum_probs=214.8
Q ss_pred CChhhhHHHhHhhhccCcccHHHHHHHHHHHhhhcchhhhhHHHHHHhcccCCchhHHHHHHHHHhCChhHHHHHHHHHH
Q 000192 966 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY 1045 (1887)
Q Consensus 966 P~e~vqDKI~FiiNNls~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LY~~fld~l~~~~L~~~Il~~Ty 1045 (1887)
++|+|+|||+|||||+|++|+++|++|+|++|+++||+|||+|||++|||+|||||+||++|+++++++.|+++|+++||
T Consensus 3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~ 82 (229)
T 4gmj_A 3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY 82 (229)
T ss_dssp SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcchhcccChHHHHHHHHhHHhHhhhhhhcCcccccCCCChhHHHHHHHhcCc--eeEEechhhhcccccCCCc
Q 000192 1046 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSL 1123 (1887)
Q Consensus 1046 ~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~id~K~LLleaY~~g~--L~~VIPFVcKVLe~~~~Sk 1123 (1887)
++|++||++++++.+++||++|||||+|||+|||||||||+||+||+|+||+|||++|. |++|||||||||++|++|+
T Consensus 83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~ 162 (229)
T 4gmj_A 83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV 162 (229)
T ss_dssp HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999995 9999999999999999999
Q ss_pred cccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcCCCccccccccccccchhhh
Q 000192 1124 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREI 1183 (1887)
Q Consensus 1124 VFkPPNPWtm~IL~LL~ELy~~~~LKlnLKFEIEVL~K~L~ldl~di~ps~~L~~r~~~~ 1183 (1887)
|||||||||||||++|+|||++|+||+|||||||||||+|++|++||+|+++|++|++..
T Consensus 163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~~ 222 (229)
T 4gmj_A 163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLK 222 (229)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTGG
T ss_pred cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchhc
Confidence 999999999999999999999999999999999999999999999999999999988753
No 2
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=100.00 E-value=3.9e-82 Score=706.47 Aligned_cols=219 Identities=34% Similarity=0.659 Sum_probs=211.0
Q ss_pred CCCCCCChhhhHHHhHhhhccCcccHHHHHHHHHHHhhhcchhhhhHHHHHHhcccCCchhHHHHHHHHHhCChhHHHHH
Q 000192 961 TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREI 1040 (1887)
Q Consensus 961 ~~i~~P~e~vqDKI~FiiNNls~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRasiEPN~H~LY~~fld~l~~~~L~~~I 1040 (1887)
..++.||++|+|||+|||||+|++|+++|++|+|++|+++||+|||+|||++|||+|||||.||++|+++++++.|+++|
T Consensus 25 ~~~e~P~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~~L~~~v 104 (249)
T 4b89_A 25 INQEGAPKDVVEKVLFVLNNVTLANLNNKVDELKKSLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSGLLHQFM 104 (249)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCCTTTHHHHHHHHHHHCCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCCCcCHHHHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhcccChHHHHHHHHhHHhHhhhhhhcCcccccCCCChhHHHHHHHhcCceeEEechhhhcccccC
Q 000192 1041 VQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQ 1120 (1887)
Q Consensus 1041 l~~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~id~K~LLleaY~~g~L~~VIPFVcKVLe~~~ 1120 (1887)
+++||++|++||+++++ +++||++|||||+|||+|||||||||+||+||||+||+|||++|+|.+|||||||||++|+
T Consensus 105 l~~T~~~i~~LL~~~~i--~~~eRs~LKNLG~WLG~iTLarNkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~k 182 (249)
T 4b89_A 105 VNVTLRQLFVLLSTKDE--QAIDKKHLKNLASWLGCITLALNKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRAS 182 (249)
T ss_dssp HHHHHHHHHHHHTBSCG--GGSCHHHHHHHHHHHHHHTGGGTCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHhhhccc--ChHHHHHHHHHHHHHhHHHHhcCCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHHHhcc
Confidence 99999999999999876 4789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcCCCccccccccccccchh
Q 000192 1121 SSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181 (1887)
Q Consensus 1121 ~SkVFkPPNPWtm~IL~LL~ELy~~~~LKlnLKFEIEVL~K~L~ldl~di~ps~~L~~r~~ 1181 (1887)
+|+|||||||||||||++|+|||++|+||+|||||||||||+|++|++||+|+++|+++++
T Consensus 183 ~SkiFkPPNPWt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l~~i~ps~~l~~~~~ 243 (249)
T 4b89_A 183 ESKIFKPPNPWTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTTKSLKPSNFINTPEV 243 (249)
T ss_dssp TCSSSSTTCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCGGGSCCCCCC-----
T ss_pred cCCccCCCCchHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHcCCChHhCCcccccCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765
No 3
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.7e-79 Score=748.69 Aligned_cols=485 Identities=21% Similarity=0.326 Sum_probs=377.9
Q ss_pred HHHHHHHhhCC-CCCHHHHHHhc-----CCCCCCCCChhhHHHHHHHHhhhcCCCcccccccCCccc-ChhhhHHHHHHH
Q 000192 314 VLVKAIKQLAP-NTNWIRVVENL-----DYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWK-NTEGQLSFLRYA 386 (1887)
Q Consensus 314 v~v~alk~~~p-~lnW~~Vi~~l-----D~~~f~i~d~~~l~ll~~~~~~~~~~~Fpi~~l~~~~W~-N~~~QlSfl~~~ 386 (1887)
-+-.+++.+.. ++||.+|+..+ |. .-.-|+..++.-+++++..+ -+++.++...|. .-.-.|.++=|-
T Consensus 89 q~~~~~~~~~~~~inW~~vFnlms~~~f~~-~~~~pt~asls~~~~~L~~~----~liD~F~~~dw~~~f~~~l~~~L~~ 163 (603)
T 4b8b_A 89 VIARSISSLQANQINWNRVFNLMSTKYFLS-APLMPTTASLSCLFAALHDG----PVIDEFFSCDWKVIFKLDLAIQLHK 163 (603)
T ss_dssp HHHHHHHTSCGGGSCHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHCSH----HHHHHHHHSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhccccccCHHHHHHHHHHHHHhc-CCCCccHHHHHHHHHHcCCC----chHHHHHcCcchHhHhHHHHHHHHh
Confidence 34567777755 89999999875 33 22345666777788877642 456666655664 344455555555
Q ss_pred hhCCCCccccCcCc-cccccccCCCCccccccc-cccccchHHHHHHHHH---hhhcCchHHHHHHhhhhhhcChhHHHH
Q 000192 387 VASPPEVFTFAHSA-RQLPYVDAVPGLKLQSGQ-ANHAWLCLDLLDVLCQ---LSEMGHASFARSMLEYPLKQCPEMLLL 461 (1887)
Q Consensus 387 l~~p~d~f~f~~~~-r~~v~~d~~~~~~~~~~~-~~~~W~sldLve~L~~---Lae~~~~~~vr~l~e~p~k~cpellll 461 (1887)
.+.--.-|++..++ -+.++- ..++.+ ... .--.=.+||+ +.++. ++++..-....+.|+.-.+..||.+.+
T Consensus 164 ~~~~qg~~dl~~~~~~~~~~~-~~p~~~--~~ll~~~si~~l~l-~~~~~~~~~~~~~~~~~~~~~f~~d~~~~Peylal 239 (603)
T 4b8b_A 164 WSVQNGCFDLLNAEGTRKVSE-TIPNTK--QSLLYLLSIASLNL-ELFLQREELSDGPMLAYFQECFFEDFNYAPEYLIL 239 (603)
T ss_dssp CCTTTTCCCGGGCTTCCBSCS-SSCCCS--CCGGGBHHHHHHHH-HHHHTTTTSCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCccCCchhhhcCCCceeccc-CCCCcc--cceeeeeehhhhhH-HHHHHHHHhccchhHHHHHHHHhhhhccCHHHHHH
Confidence 54323355555555 233332 212111 000 1111123333 22222 222222345678999999999999977
Q ss_pred HhhccCcch------hHHHHHHHHhhhHHhHcCCCch-HHHHHHhhcCchhhHHHHHHhhhcCCccHHHHHHHHHHhhhh
Q 000192 462 GMAHINTAY------NLIQYEVSFAVFPMIIKSTMSN-GMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKIL 534 (1887)
Q Consensus 462 gl~qi~~~~------~~l~~ell~~l~~~fl~~~~~s-~vi~~lW~~~~~~v~~~l~d~y~~d~~~l~rIldvaqelk~L 534 (1887)
++..-.+.| ..+.+|++-.||-..+...+.+ .-+.+.+. ++.-++......+++|+.+++|++|||+|+|||
T Consensus 240 ~~~~~~k~~~~~~en~~~i~~l~~~l~~~~~~~~~~~l~~~i~~~~-~~~k~~~~~~~Ii~kD~~~l~rildi~~elk~L 318 (603)
T 4b8b_A 240 ALVKEMKRFVLLIENRTVIDEILITLLIQVHNKSPSSFKDVISTIT-DDSKIVDAAKIIINSDDAPIANFLKSLLDTGRL 318 (603)
T ss_dssp HHHHTHHHHHHHHCCHHHHHHHHHHHHHHHHHSCGGGHHHHHHHCC-CHHHHHHHHHHHHHHSCSCCSHHHHHHHHTTCH
T ss_pred HHHhhccccccccccchHHHHHHHHHHHHHHhcChHHHHHHHHHcc-ChhHHHHHHHHHHhcCchhHHHHHHHHHHhChH
Confidence 777544544 4567888888887777544433 23444455 445555888888999999999999999999999
Q ss_pred hhhhccCCchhHHHHHHHhhcccccCHHHHHHHHhhcCcchHHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhH
Q 000192 535 SSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKI 614 (1887)
Q Consensus 535 ~~lL~~~pf~faidLA~lAsrre~L~LekWL~~~l~~~~~~f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~etv 614 (1887)
+.||+..||.||+|+|++|+||||+|||+|++++++.+|.+ +|++||+.|+..+. +.. +.++...|.++|+
T Consensus 319 ~~lL~~~p~~faldLAalAs~rg~lnLe~WL~~~l~~~~~~---~lL~FL~~K~~~e~----~~~--~~~~~~~L~i~tv 389 (603)
T 4b8b_A 319 DTVINKLPFNEAFKILPCARQIGWEGFDTFLKTKVSPSNVD---VVLESLEVQTKMTD----TNT--PFRSLKTFDLFAF 389 (603)
T ss_dssp HHHHHHSCTTHHHHTHHHHHHHTCCCHHHHHHHHCCTTTHH---HHHHHHHHHHHCCC----C----CSCTTTSCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHhhcCch---HHHHHHHHHhhccc----cCC--CCCCCceecHHHH
Confidence 99999999999999999999999999999999999999976 99999999997651 111 1223355888999
Q ss_pred HHHHHHHHhhhCCCCchHHHHHHHHHHHHhhccCCCCCCCC-CCCC-----CCCCCCchhHHHHHHHHHHHhhccCCCHH
Q 000192 615 PVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADS-----STSEGYADDIEAEANSYFHQMFSGQLTIE 688 (1887)
Q Consensus 615 ~~ll~~L~~~~~~~~s~~l~e~l~~~~~~~l~~~PrL~n~~-~~d~-----~~~~~f~~dVE~Ean~yfqkmY~~eisI~ 688 (1887)
++||++|++. .++++..+++++++..|+++||||+|+| |||+ +.++.||+|||+|||+||||||++++||+
T Consensus 390 ~~lLk~L~~~---~l~~e~~e~l~~vq~~~lq~yPRLiN~G~G~D~~i~an~~~~~~~~dIE~ean~yfqkmY~~eisI~ 466 (603)
T 4b8b_A 390 HSLIEVLNKC---PLDVLQLQRFESLEFSLLIAFPRLINFGFGHDEAILANGDIAGINNDIEKEMQNYLQKMYSGELAIK 466 (603)
T ss_dssp HHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHCGGGTTTTSSCHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHhc---CCChHHHHHHHHHHHHHHHhCchhhcCCCcchhhhhccCCCCCCCHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999864 4577889999999999999999999996 7875 35678999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCC
Q 000192 689 AMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPAD 768 (1887)
Q Consensus 689 eiv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrFf~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~ILeAlr~p~~ 768 (1887)
++|++|+|||+|+++||||||+||||+||||||||++||++||++||+|||+||+|+||++.+|++||||||||+|+|++
T Consensus 467 ~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~iTA~LFG~LI~~~Ll~~~~L~iALr~ILeAlrkp~~ 546 (603)
T 4b8b_A 467 DVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALATTSVLFGSMILFQLLRGFVLDVAFRIIMRFAKEPPE 546 (603)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHhhhhhhHHHHHHh-cccccccccHHHHHHHHHHHHhhh
Q 000192 769 SKMFVFGTKALEQFVDRLIEWPQYCNHIL-QISHLRSTHAELVAFIERALARIS 821 (1887)
Q Consensus 769 skMf~FGi~AL~qF~~RL~EwPqyC~~Ll-~ip~L~~~~p~l~~~i~~~~~~~~ 821 (1887)
||||+||++||++|++||+|||+||.+|+ +|||| +++|+||++|+++.++++
T Consensus 547 skmf~FGi~ALeqF~~RL~ewPqyc~~lL~~ip~l-q~~P~l~q~i~~~a~~~~ 599 (603)
T 4b8b_A 547 SKMFKFAVQAIYAFRIRLAEYPQYCKDLLRDVPAL-KSQAQVYQSIVEAATLAN 599 (603)
T ss_dssp SHHHHHHHHHHHHTGGGGGGCHHHHHHHHHHCGGG-GGCHHHHHHHHHTTC---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc-ccChHHHHHHHHHHcCCC
Confidence 99999999999999999999999997766 79999 589999999999876443
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=81.20 E-value=3.8 Score=46.75 Aligned_cols=187 Identities=16% Similarity=0.203 Sum_probs=113.2
Q ss_pred ChhhhHHHhHhhhccC--cccHHHHHHHHHHHhh-----hcchhhhhHHHHHHhcccCCchhHHHHHHHHHhCC-----h
Q 000192 967 ASEVQDKISFIINNIS--ALNVEAKAKEFTEILK-----EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS-----K 1034 (1887)
Q Consensus 967 ~e~vqDKI~FiiNNls--~~Nl~~K~~Elk~~L~-----~~y~~WFA~YLV~kRasiEPN~H~LY~~fld~l~~-----~ 1034 (1887)
++.+..||..|+|-|| ++|++.-++++.+.+. ++...-+..-++. .|-.||||-.+|.++...|.. |
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfe-kAi~ep~fs~~YA~LC~~l~~~l~~~~ 94 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQ-QATSIPNFSYMGARLCNYLSHHLTISP 94 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-HHHSSTTCHHHHHHHHHHHHHHCCCCC
T ss_pred hHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHhCcccHHHHHHHHHHHHHhcCCCC
Confidence 4689999999999999 9999999999988753 2445566665554 488999999999999998865 2
Q ss_pred ---hHHHHHHH---HHHHHHHHHhcchhcccChHHHHHHHHhHHhHhhhhhhcC------cccccCCC---ChhHHHHHH
Q 000192 1035 ---ALNREIVQ---ATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRN------QVLRAREI---DPKSLIIEA 1099 (1887)
Q Consensus 1035 ---~L~~~Il~---~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarN------kPI~~k~i---d~K~LLlea 1099 (1887)
.+.+..|+ +-|++-..... .....|...-+.--++|-+-.-.+ +++ +-.| .+++||-.-
T Consensus 95 ~~~~Fr~lLL~rcQ~eFe~~~~~~~-----~d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l-~e~I~~~ci~~Ll~~l 168 (234)
T 3rk6_A 95 QSGNFRQLLLQRCRTEYEVKDQAAK-----GDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVT-RADILQVGLRELLNAL 168 (234)
T ss_dssp TTCCHHHHHHHHHHHHHTTHHHHTS-----SCHHHHHHHHHHHHHHHHHHHHCCEECTTSSEE-CCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhhHHhhh-----ccHHHHHHHHHHHHHHHHHHhhhcccccccchh-HHHHHHHHHHHHHHhc
Confidence 14444443 23333222222 121223322233336777765422 333 3222 356665432
Q ss_pred HhcCceeEEechhhhcccccCCCcc---ccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHh
Q 000192 1100 YEKGLMIAVIPFTSKILEPCQSSLA---YQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1161 (1887)
Q Consensus 1100 Y~~g~L~~VIPFVcKVLe~~~~SkV---FkPPNPWtm~IL~LL~ELy~~~~LKlnLKFEIEVL~K 1161 (1887)
.+. .-.--|-.+|++|..|-+.-= +.--.++.-.++.-|.+|.+.+++--.++|=|+.|+.
T Consensus 169 ~~~-p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dlie 232 (234)
T 3rk6_A 169 FSN-PMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVE 232 (234)
T ss_dssp HHS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cCC-CChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 221 111123344555543321100 0011368889999999999999999999999998874
No 5
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=76.81 E-value=8.2 Score=45.06 Aligned_cols=194 Identities=12% Similarity=0.126 Sum_probs=111.2
Q ss_pred CCChhhhHHHhHhhhccCcccHHHHHHHHHHHhhhc-------chhhhhHHHHHHhcccCCchhHHHHHHHHHhCCh---
Q 000192 965 APASEVQDKISFIINNISALNVEAKAKEFTEILKEQ-------YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--- 1034 (1887)
Q Consensus 965 ~P~e~vqDKI~FiiNNls~~Nl~~K~~Elk~~L~~~-------y~~WFA~YLV~kRasiEPN~H~LY~~fld~l~~~--- 1034 (1887)
...+++..||..|+|-||++|++.=+.+|.++-... -..=+.. +|.+.|-.||+|=.+|.+|+..|...
T Consensus 31 ~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~-~If~kA~~ep~fs~~YA~Lc~~l~~~l~~ 109 (284)
T 2vso_E 31 LDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIE-QIFLKACDEPHWSSMYAQLCGKVVKELNP 109 (284)
T ss_dssp CCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHSCT
T ss_pred ccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHH-HHHHHHHcCcchHHHHHHHHHHHHHhcCc
Confidence 456889999999999999999999999998875321 1122333 56777999999999999999987532
Q ss_pred -------------h-HHHHHHHHHHHHHHHHhcchhcccC------------------hHHHHHHHHhHHhHhhhhhhcC
Q 000192 1035 -------------A-LNREIVQATYENCKVLLGSELIKSS------------------SEERSLLKNLGSWLGKLTIGRN 1082 (1887)
Q Consensus 1035 -------------~-L~~~Il~~Ty~~i~~LL~se~~~~~------------------s~eRslLKNLGsWLG~iTLarN 1082 (1887)
. +.+.+|+.....-..... ++.... ...|..--|+-.++|-+-.-+=
T Consensus 110 ~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~-~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~~ 188 (284)
T 2vso_E 110 DITDETNEGKTGPKLVLHYLVARCHAEFDKGWT-DKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNL 188 (284)
T ss_dssp TCCBCC---CCTHHHHHHHHHHHHHHHHHHCCC-SSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHhhhhh-hhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 1 223333322211111110 100000 0112222233466666543211
Q ss_pred cccccCCCChhHHHHHHHhcCceeEEechhhhcccccCCCccccCC---------CccHHHHHHHHHHHhcCCccchhhH
Q 000192 1083 QVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPP---------NPWTMAILGLLAEIYSMPNLKMNLK 1153 (1887)
Q Consensus 1083 kPI~~k~id~K~LLleaY~~g~L~~VIPFVcKVLe~~~~SkVFkPP---------NPWtm~IL~LL~ELy~~~~LKlnLK 1153 (1887)
-+-+.=.-.++.||- .+...-=.--|=.+|++|..|...-=--+| -+..-.++..|.++-+.+++---++
T Consensus 189 l~~~i~~~ci~~LL~-~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~Rir 267 (284)
T 2vso_E 189 LTGKMMFECFRRLMK-DLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIK 267 (284)
T ss_dssp SCHHHHHHHHHHHHH-HHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred CcHHHHHHHHHHHhc-cCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 110000112444443 222111122355678888877544222222 2578889999999988888888999
Q ss_pred HHHHHHHh
Q 000192 1154 FDIEVLFK 1161 (1887)
Q Consensus 1154 FEIEVL~K 1161 (1887)
|=||.++.
T Consensus 268 Fml~dlid 275 (284)
T 2vso_E 268 FKLIDIKE 275 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998874
No 6
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=70.51 E-value=6.4 Score=45.37 Aligned_cols=187 Identities=13% Similarity=0.137 Sum_probs=108.3
Q ss_pred hhhhHHHhHhhhccCcccHHHHHHHHHHHhh--hcchhhhhHHHHHHhcccCCchhHHHHHHHHHhCC---hh-------
Q 000192 968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS---KA------- 1035 (1887)
Q Consensus 968 e~vqDKI~FiiNNls~~Nl~~K~~Elk~~L~--~~y~~WFA~YLV~kRasiEPN~H~LY~~fld~l~~---~~------- 1035 (1887)
+.+..+|..|+|-||++|++.=+.+|.++-- ++-..=+. -+|.++|-.||+|=.+|.+|+..|+. |.
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi-~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~ 87 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVI-DLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT 87 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHH-HHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccc
Confidence 5788999999999999999988888764311 11111122 36788899999999999999999975 21
Q ss_pred --HHHHHHHHHHHHHHHHhcch-----hcc-----cChHHH---------------HHHHHhHHhHhhhhhhcCcccccC
Q 000192 1036 --LNREIVQATYENCKVLLGSE-----LIK-----SSSEER---------------SLLKNLGSWLGKLTIGRNQVLRAR 1088 (1887)
Q Consensus 1036 --L~~~Il~~Ty~~i~~LL~se-----~~~-----~~s~eR---------------slLKNLGsWLG~iTLarNkPI~~k 1088 (1887)
+.+.+|+.....-......+ +.+ ..+.|| ..--|+-.++|-+..-+=-+-+.-
T Consensus 88 ~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~i~ 167 (260)
T 1hu3_A 88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM 167 (260)
T ss_dssp -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCHHHH
Confidence 23344432211111111110 000 112222 222366667777665321111100
Q ss_pred CCChhHHHHHHHhcCceeEEechhhhcccccCCCccccC-CCccHHHHHHHHHHHhcCCccchhhHHHHHHHHh
Q 000192 1089 EIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQP-PNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK 1161 (1887)
Q Consensus 1089 ~id~K~LLleaY~~g~L~~VIPFVcKVLe~~~~SkVFkP-PNPWtm~IL~LL~ELy~~~~LKlnLKFEIEVL~K 1161 (1887)
.-.++.|| +..... -|=.+|++|..|...- .++ +.+.+-.++.-|.++-+.+++---++|=||.|+.
T Consensus 168 ~~~l~~Ll-~~~~e~----~iE~l~~lL~tvG~~L-~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~d 235 (260)
T 1hu3_A 168 HDCVVKLL-KNHDEE----SLECLCRLLTTIGKDL-DFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVID 235 (260)
T ss_dssp HHHHHHHH-HSCSHH----HHHHHHHHHHHHHHHH-CCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHH----HHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 11233333 211111 3556788888885542 333 3367888999999998888888899999999975
No 7
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=32.45 E-value=1.9e+02 Score=31.04 Aligned_cols=89 Identities=10% Similarity=0.183 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHhhccCCCHHHHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHhhhhh
Q 000192 666 ADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQ 745 (1887)
Q Consensus 666 ~~dVE~Ean~yfqkmY~~eisI~eiv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrFf~~YP~~eL~~TA~LFG~lI~~~ 745 (1887)
.+++++++++..+.+|+.. .++|.+.-++.++... .-..+....|..-||. + ++|=..+++|+-.|.. +
T Consensus 6 ~ee~~kk~~~ii~EYf~~~-D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldr-----k--~~ere~~s~LL~~L~~-~ 74 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHG-DTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEG-----K--ASHREMTSKLLSDLCG-T 74 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTS-----C--HHHHHHHHHHHHHHBT-T
T ss_pred HHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcC-----C--HHHHHHHHHHHHHHHH-C
Confidence 4688899999999988864 6899999999988432 3344555555555653 2 4555569999999965 9
Q ss_pred ccchhHHHHHHHHHHHHhcC
Q 000192 746 LVTHLTLGIALRGVLDALRK 765 (1887)
Q Consensus 746 Lv~~~~L~iALr~ILeAlr~ 765 (1887)
+++.-.+.-|+..+++.+-+
T Consensus 75 ~ls~~~i~~Gf~~lle~ldD 94 (165)
T 2rg8_A 75 VMSTTDVEKSFDKLLKDLPE 94 (165)
T ss_dssp TBCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhChh
Confidence 99999999999999988754
No 8
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=28.36 E-value=1.3e+02 Score=39.86 Aligned_cols=106 Identities=18% Similarity=0.276 Sum_probs=79.2
Q ss_pred CChhhhHHHhHhhhccCc---ccHHHHHHHHHHHhhhc---chhhhhHHHHHHhcccCCchhHHHHHHHHHhCCh--hHH
Q 000192 966 PASEVQDKISFIINNISA---LNVEAKAKEFTEILKEQ---YYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSK--ALN 1037 (1887)
Q Consensus 966 P~e~vqDKI~FiiNNls~---~Nl~~K~~Elk~~L~~~---y~~WFA~YLV~kRasiEPN~H~LY~~fld~l~~~--~L~ 1037 (1887)
|++++.++|-.+|-++.. +|+++.+.+|...|.++ +-.-|+.- +++=+.-.|.+-.+|.-++--+|.+ ++=
T Consensus 4 ~~~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~-l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G 82 (771)
T 1h2v_C 4 DANETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRL-LCTVARLLPEKLTIYTTLVGLLNARNYNFG 82 (771)
T ss_dssp ------CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHH-HHHHHHHCGGGHHHHHHHHHHHHTTCHHHH
T ss_pred CcccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHhCCCcchHHHHHHHHHHcCChhHH
Confidence 567889999999999988 99999999999999754 34455544 4666889999999999999999955 788
Q ss_pred HHHHHHHHHHHHHHhcchhcccChHHHHHHHHhHHhHhhhhh
Q 000192 1038 REIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTI 1079 (1887)
Q Consensus 1038 ~~Il~~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTL 1079 (1887)
+++++.+..+.+.-|+. .+....|.+-.+|+.+.=
T Consensus 83 ~~lv~~l~~~f~~~l~~-------~~~~~~k~~lrFLa~L~n 117 (771)
T 1h2v_C 83 GEFVEAMIRQLKESLKA-------NNYNEAVYLVRFLSDLVN 117 (771)
T ss_dssp HHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-------cChHHHHHHHHHHHHhcc
Confidence 89999888888888775 244566666666666643
No 9
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.74 E-value=2.5e+02 Score=29.68 Aligned_cols=90 Identities=12% Similarity=0.150 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHhhccCCCHHHHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHhhhhhc
Q 000192 667 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746 (1887)
Q Consensus 667 ~dVE~Ean~yfqkmY~~eisI~eiv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrFf~~YP~~eL~~TA~LFG~lI~~~L 746 (1887)
+++++++++..+..|+.. .++|.+.-++.++.. .- -.++-...|..-+|.- .+++-..++.|+-.+.+.++
T Consensus 6 eel~kki~~lL~EY~~~~-D~~EA~~cl~EL~~p-~f-~~e~V~~~i~~alE~~------~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLSG-DISEAEHCLKELEVP-HF-HHELVYEAIVMVLEST------GESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp CHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCG-GG-HHHHHHHHHHHHHHCC------SSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHhCCC-cc-hHHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHCCC
Confidence 578899999999988864 689999999999753 22 3444444444445521 34666779999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000192 747 VTHLTLGIALRGVLDALRK 765 (1887)
Q Consensus 747 v~~~~L~iALr~ILeAlr~ 765 (1887)
|+.-.+.-|+.-|++.+-+
T Consensus 77 is~~q~~~Gf~~vl~~ldD 95 (152)
T 2ion_A 77 ITIDQMKRGYERIYNEIPD 95 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhChH
Confidence 9999999999988887754
No 10
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.07 E-value=3.3e+02 Score=27.90 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHhhccCCCHHHHHHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHhhhhhc
Q 000192 667 DDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQL 746 (1887)
Q Consensus 667 ~dVE~Ean~yfqkmY~~eisI~eiv~~L~~~k~S~~~rdqdvFaCMih~LFdEYrFf~~YP~~eL~~TA~LFG~lI~~~L 746 (1887)
+++++++++..+..|+.. .++|.+.-++.++.. .-+ .++-...|..-+|.- .+++-..++.|+-.+.+.++
T Consensus 4 eel~kki~~ll~EY~~~~-D~~Ea~~cl~eL~~p-~f~-~e~V~~~i~~alE~~------~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 4 NHLVKEIDMLLKEYLLSG-DISEAEHCLKELEVP-HFH-HELVYEAIVMVLEST------GESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp CHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHTCG-GGH-HHHHHHHHHHHHHCC------SSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHhCCC-ccH-HHHHHHHHHHHHcCC------ChHHHHHHHHHHHHHHHCCC
Confidence 578899999999988864 689999999999743 233 344444444445521 23556679999999999999
Q ss_pred cchhHHHHHHHHHHHHhcC
Q 000192 747 VTHLTLGIALRGVLDALRK 765 (1887)
Q Consensus 747 v~~~~L~iALr~ILeAlr~ 765 (1887)
|+.-.+.-|+.-|++.+-+
T Consensus 75 is~~q~~~Gf~~v~~~l~D 93 (129)
T 2nsz_A 75 ITIDQMKRGYERIYNEIPD 93 (129)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhhChH
Confidence 9999999999988887754
No 11
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=21.94 E-value=8.8e+02 Score=27.25 Aligned_cols=45 Identities=13% Similarity=0.064 Sum_probs=22.2
Q ss_pred cHHHHHHHHhh--------CCCChhhHHHHHHHHHh---cCCCccHHHHHHHHHHH
Q 000192 1745 NRDITMGLIRS--------ELLNLAEYNVHMAKLID---GGRNKAATEFAISLLQT 1789 (1887)
Q Consensus 1745 Nv~vi~~LIr~--------~Li~~~e~D~~Lak~i~---~~~n~~av~Fa~~Ll~~ 1789 (1887)
|+-.|--|... +++...=+-.-+-+++. .......++.+..|+++
T Consensus 131 ~i~FIgELf~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l~~~p~ee~vE~l~~lL~t 186 (234)
T 3rk6_A 131 FVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKL 186 (234)
T ss_dssp HHHHHHHHHHHCCEECTTSSEECCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 45555555554 45543333323333332 12345667777777654
Done!