BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000193
(1885 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q92621|NU205_HUMAN Nuclear pore complex protein Nup205 OS=Homo sapiens GN=NUP205 PE=1
SV=3
Length = 2012
Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 392/1706 (22%), Positives = 696/1706 (40%), Gaps = 324/1706 (18%)
Query: 311 GFVGGVRLAWAVHLMLIH---DEIAARE-TVSSSSSSELSNIRSCLETIFSNNVFQFLLD 366
G VRLAWA+ L I D A E T + + +EL+ ++NVF FL++
Sbjct: 324 GLQATVRLAWALALRGISQLPDVTALAEFTEADEAMAELA---------IADNVFLFLME 374
Query: 367 KALRTAAYQNDDEDMVYMNNAYLHKLITCFLSHQLARDKVKESKDKAMSVLNSYRIAGSH 426
+ + + ++ Y+ +H LIT FL+ L KVK+ +++A ++ I S
Sbjct: 375 SVVVSEYFYQEE---FYIRR--VHNLITDFLA--LMPMKVKQLRNRADE--DARMIHMSM 425
Query: 427 DFVHDSNLPSQQDTEIGPLPFVSLLEFVSEIYQKEP-------------ELLSGNDVLWT 473
++ + ++D E L+ + E+Y+K P E L ++ +
Sbjct: 426 QMGNEPPISLRRDLE-------HLMLLIGELYKKNPFHLELALEYWCPTEPLQTPTIMGS 478
Query: 474 FVVFAGEDHTNFQTL-----------------VAFLKMLSTLASSQEGASKVYELL---- 512
++ A + Q + + +LKML LA+ + A + LL
Sbjct: 479 YLGVAHQRPPQRQVVLSKFVRQMGDLLPPTIYIPYLKMLQGLANGPQCAHYCFSLLKVNG 538
Query: 513 -------QGKAFRSIGWRTLFDCLSIYDEKFKQSLQTGGAL----LPD--FQEGDAKALV 559
QG + W F L +Y E ++ L + ++ LP + + L+
Sbjct: 539 SSHVENIQGAGGSPVSWEHFFHSLMLYHEHLRKDLPSADSVQYRHLPSRGITQKEQDGLI 598
Query: 560 AYLNVLQKVM---ENGNS--IERKNWFPDIEPLFKLLSYENVPPYLKGALRNAIAACIHV 614
A+L + ++ EN E W P + L L ++PP LK L +AA
Sbjct: 599 AFLQLTSTIITWSENARLALCEHPQWTPVVVILGLLQC--SIPPVLKAELLKTLAA-FGK 655
Query: 615 SLVMKDNIWRLLEQYDLPVVVGTHVGNTAQ-PIAGQVYDMQFELNEIEARREQYPSTISF 673
S + ++W+ LE T + T + P Q ++ ELNEIE+R E+YP T +F
Sbjct: 656 SPEIAASLWQSLEY--------TQILQTVRIPSQRQAIGIEVELNEIESRCEEYPLTRAF 707
Query: 674 LNLLNALIAEEKDVSDRGRR-----FVGIFRFVYDHVFGPFPQRAYADPCEKWQLVVACL 728
L++ L+ E S+ G F +F+ D VF F RAY EKW++ L
Sbjct: 708 CQLISTLV-ESSFPSNLGAGLRPPGFDPYLQFLRDSVFLRFRTRAYRRAAEKWEVAEVVL 766
Query: 729 KHFHMILNMYDIQEEDIDNAVEQSSTLTQSSPIQMQLPVLELLKDFMSGKAVFRNIMGIL 788
+ F+ +L Y+ Q ED V+Q L I + P L+ ++ + + +L
Sbjct: 767 EVFYKLLRDYEPQLEDF---VDQFVELQGEEIIAYKPPGFSLMYHLLNESPMLELALSLL 823
Query: 789 QPGVDSIITERNNQIYGPL-----LEKAVQLSLEIVILVFEKDLLLSDFWR--------- 834
+ GV + T Y P LEKAVQ L ++ L +K+ L D R
Sbjct: 824 EEGVKQLDT------YAPFPGKKHLEKAVQHCLALLNLTLQKENLFMDLLRESQLALIVC 877
Query: 835 PLYQPVDVI--LSQDHNQIVALLEYVRY-DFLPQIQQCSIKIMSILSSRMVGLVQLLLKY 891
PL Q + I ++ + +V + Y+ + + P++ S KI+ +S ++L+ +
Sbjct: 878 PLEQLLQGINPRTKKADNVVNIARYLYHGNTNPELAFESAKILCCISCNSNIQIKLVGDF 937
Query: 892 NAASS----LVEDYAACLE-------LRSEESQIIEKS----GDDPGVLIMQLLIDNISR 936
S L+ + CL+ +R EE +EK + + I+ LLI ++
Sbjct: 938 THDQSISQKLMAGFVECLDCEDAEEFVRLEEGSELEKKLVAIRHETRIHILNLLITSLEC 997
Query: 937 PAPNITHLLLKFDLDTPIERTVLQ-------PKFHYSCLKIILEILEKVSKPDVNAL--- 986
PN+ LL F+L P+ T LQ P+ +CL IL ILEK ++ +
Sbjct: 998 NPPNLALYLLGFELKKPVSTTNLQDPGVLGCPR---TCLHAILNILEKGTEGRTGPVAVR 1054
Query: 987 ----LHEFGFQLLYELCLDPLTCGPTMDLLSNKKYQFFVKHLDAIGVAPLPKRNSNQALR 1042
L E +Q++Y+LC T GPTM L + F L + SN+
Sbjct: 1055 ESPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQ-DFLFSQLQYLPF-------SNKEYE 1106
Query: 1043 ISSLHQRAWLLKLLAIELHAGYGSSSTHQEACQTILAHLF-----------GRDHIEDTD 1091
IS L+Q +WL+K +IEL +S Q + L HL G IED +
Sbjct: 1107 ISMLNQMSWLMKTASIELRV---TSLNRQRSHTQRLLHLLLDDMPVKPYSDGEGGIEDEN 1163
Query: 1092 RTLSLPFMVQNITEHAGTRTISKSKVLELLEVVQFRSPDTAMKLSQIVSNMKYDLL---- 1147
R++S F+ H T T + K+L +L+ + F +I ++ D
Sbjct: 1164 RSVS-GFL------HFDTATKVRRKILNILDSIDFSQ--------EIPEPLQLDFFDRAQ 1208
Query: 1148 AEEILGNPTTSGKGGIYYYSERGDRLIDLSSFSDKLWKKLNIVYPQLSNFGSEAELNDVK 1207
E+++ N + + RG + ++ L ++N L + + +
Sbjct: 1209 IEQVIAN--------CEHKNLRGQTVCNVKLLHRVLVAEVNA----LQGMAAIGQRPLLM 1256
Query: 1208 EAIQQLLRWGWKYNKNLEEQAAQLHMLTGWSQVVEV---SVSRRISALGNRSEILYQIL- 1263
E I +L++ NK L+ A+ H L W Q+VE+ + + + +R I+ IL
Sbjct: 1257 EEISTVLQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQDLIQAEDRQLIIRDILQ 1316
Query: 1264 ---DACLGASASPDCSLRMA-FILCQVALTCMAKLRDEK-------------FLCPGGLN 1306
D L A+ + +A + A A L ++K F+
Sbjct: 1317 DVHDKILDDEAAQELMPVVAGAVFTLTAHLSQAVLTEQKETSVLGPAEAHYAFMLDSCFT 1376
Query: 1307 SDSVTFLDVIMVKQLSNGACHSLLFKLIMAILRNESS-EALRRRQYALLLSYFQYCQHML 1365
S ++ + + + + +L KL+ IL+ + +R Y LL Y Q Q
Sbjct: 1377 SPPPEENPLVGFASIGDSSLYIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPD 1436
Query: 1366 APDVPTTVLQYLLLDEQDGEDLDLQKIDKEQAELTHANFSTLRKEAQAILDLFIKDATQG 1425
PD + + ED+ K+ +E N + + A++++ +DA G
Sbjct: 1437 EPDTLEAAKKTMWERLTAPEDV-FSKLQRE-------NIAIIESYGAALMEVVCRDACDG 1488
Query: 1426 SEPGKTLSLYVLDALICIDHEKYFLNQLQSRGFLRSCLMNVSNVSYQDGKRSLDT----- 1480
E G+ L+L +LD ++ +D ++ +L L + G+L+ V S + R+L +
Sbjct: 1489 HEIGRMLALALLDRIVSVDKQQQWLLYLSNSGYLK-----VLVDSLVEDDRTLQSLLTPQ 1543
Query: 1481 ---LQRACTLEAELALLLRISHKYGKSGAQVLFSMGSLEHIASCKAVGLQGSLRRVATKP 1537
L+ T E+++A L R++ + GA L G + +A C+ + R T P
Sbjct: 1544 PPLLKALYTYESKMAFLTRVAKI--QQGALELLRSGVIVRLAQCQVYDM-----RPETDP 1596
Query: 1538 RRALG---------GDIDRQRMIVTPMLRLVFSLTSLVDTSDFFEVKNKVVREVMDFIKG 1588
+ G +DR R I+ P L+L ++ TS + + +V+ F+
Sbjct: 1597 QSMFGMRDPPMFIPTPVDRYRQILLPALQLC----QVILTSSMAQ-HLQAAGQVLQFLIS 1651
Query: 1589 HQLLVDQVLQ-ENISEADELTMEQINLVVGILSK-VWP---------------YEESDEY 1631
H + +L+ +++S +++++ L+ GI+SK P E
Sbjct: 1652 HSDTIQAILRCQDVSAG---SLQELALLTGIISKAALPGILSELDVDVNEGSLMELQGHI 1708
Query: 1632 G-FVQGLFGMMSSLFSSD-LENLTFSQ---SARSLENQRKSELKKFQLCFSLSSYLYFMV 1686
G F + G++S SD L F + + + EL Q+C ++ Y ++
Sbjct: 1709 GRFQRQCLGLLSRFGGSDRLRQFKFQDDNVEGDKVSKKDEIELAMQQICANVMEYCQSLM 1768
Query: 1687 TKKSLRLQ-----VSRSLDDYNTNSGLQQLT---------LTSLG---SLLNSATAVLER 1729
+ S Q + SL + G +Q T L LG LL +
Sbjct: 1769 LQSSPTFQHAVCLFTPSLSETVNRDGPRQDTQAPVVPYWRLPGLGIIIYLLKQSANDFFS 1828
Query: 1730 AAEEKSLLLNKIRDINELSRQEVDEVIN--MCVREDYVSSSDNIQKRRYV-AMVEMCQVA 1786
+ ++K++++ +L E+ E+ M D +S++ ++YV A + +V
Sbjct: 1829 YYDSHRQSVSKLQNVEQLPPDEIKELCQSVMPAGVDKISTA-----QKYVLARRRLVKVI 1883
Query: 1787 GNRDQLITLLLLLTEHVLNVILIHFQ 1812
NR +L++L + E L ++ H +
Sbjct: 1884 NNRAKLLSLCSFIIETCLFILWRHLE 1909
>sp|P78847|NU186_SCHPO Nucleoporin nup186 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup186 PE=2 SV=2
Length = 1647
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 167/745 (22%), Positives = 299/745 (40%), Gaps = 92/745 (12%)
Query: 7 LLATIESALLGPSPPSPAQRIELIHAIHNSLSSFKSLLSYPPPKPSDRAQVQSREVRLPD 66
LL IES PS P+ + R+ LI + + F L+ P + R +++S EV L
Sbjct: 15 LLQCIES---NPSNPNVSSRL-LIQCLESYSKDFLKFLALDPANANSRKKLESGEVELGG 70
Query: 67 SPPISLDDQDVQIALKLSDDLHLNEVDCVRLLVSANQECGLMGRDPIEILRLASGLWYTE 126
+++Q +Q++L LS L+L+E+ C LL + + R P++ A ++
Sbjct: 71 VIN-KVNEQFIQLSLTLSTQLNLDEIQCASLLQRGIEASQNLDRTPVQA---ALYFFFLA 126
Query: 127 RRDLITALYILFRAVVLDQGLEEDIVVDIQKYLEDLVNTGLRQRLISLMKELNREEPTGL 186
R L+ L L R V L + LE DI ++ YL+ L G +L+K P L
Sbjct: 127 REQLLECLESLTRVVGL-KDLESDISTALKSYLQSLCENG-----NNLVKTCIDTIPI-L 179
Query: 187 GGPLCERYVLDSRGALVERRAVV-YRERLILGH------CLVLSVLVVRTSPKDVKDAFS 239
+ E ++ G ++ VV ++E + L H +SV++ + + D+ S
Sbjct: 180 DNKVSEILKSEAGGQILGVSEVVDFQEFIRLSHEAHVAELETISVILYQLAKVDLFQN-S 238
Query: 240 ALKDSAAELSENNDTLKHQITFSLLFSLVIAFISDALST--VPD-KSSVLSRDASFRKEF 296
+ L + + K+ + L+ + AFI L +PD K + S ++
Sbjct: 239 HFESLLVMLRKYDSPNKNAV---LILPTLYAFIDKVLEVEYLPDQKVQLRSNSVEILQKI 295
Query: 297 HE-IVMATGSDPIVEGFVGGVRLAWAVHLMLIHDEIAARETVSSSSSSELSNIRSCLETI 355
H+ I+ + D F + + W L +I E V S E + I++ I
Sbjct: 296 HQAIIQSPSQDWRSSQFKNILGIWWVTRLNATCKQI---EKVPSFIDYE-TTIKNAANEI 351
Query: 356 FSNNVFQ---FLLDKALRTA-------AYQNDDEDMVYMNNAYLHKLITCFLSHQLARDK 405
N VF LL R + A+ + +N + + I + +L R
Sbjct: 352 IQNGVFSDMITLLVYPFRQSETEGMEWAFAFKSRSRITVNWSLIRPFIASIIFSEL-RSF 410
Query: 406 VKESKDKAMSVLNSYRIAGSHDFV----HDSNLPSQQDTEIGPLPFVSLLEFVSEIYQKE 461
+ +L + R+ ++ + +++P +Q E PF +S IY
Sbjct: 411 AQAFVSYMPDILKTLRLLEEDRYLTNTTYPTSIPGEQIEEY--FPFEEFYYLLSSIYTYN 468
Query: 462 PELLSG--NDV---LWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKVYEL----- 511
+S +D+ ++ F+ ++ + AF +L++L + ASK+YEL
Sbjct: 469 VSWISDFWDDIESDMYGFLTWSMGSQIP-GIITAFTLLLASLCKNTTSASKIYELFSEPI 527
Query: 512 -----LQGKAFRSIGWRTLFDCLSIYDEKFK--QSLQTGGALL---PDFQEGD---AKAL 558
L+ S W +F+ Y K Q++ T L D E D A L
Sbjct: 528 PEVGHLESLMITSPSWSYIFNVFRYYISHLKPVQTVVTSSGLARVHTDPSEIDTDSALIL 587
Query: 559 VAYLNVLQKVMENGNSI-----ERKNWFPDIEPLFKLLSYENVPPYLKGALRNAIAACIH 613
AY+ + V+ I E ++ P I LF+LL +P ++ + A+ + H
Sbjct: 588 QAYILLFSSVVRQDAQIASTFCENQDLNP-IATLFELLECR-LPDSVRICIVRALESLAH 645
Query: 614 VSLVMKDN-IWRLLEQYDLPVVVGTHVGNTA---------QPIAGQVYDMQFELNEIEAR 663
+S +N +W L+ + + V+ G A + + V LN I
Sbjct: 646 LSTGSFNNALWTALDNWFVSSVLFDVDGGLAPMSIPAISKRSLTKPVTSCGPLLNNIRRL 705
Query: 664 REQYPSTISFLNLLNALIAEEKDVS 688
ISF+NLL +L + +++
Sbjct: 706 TVNLEMKISFVNLLTSLTRNKSELN 730
>sp|Q6NKL5|RECF_CORDI DNA replication and repair protein RecF OS=Corynebacterium
diphtheriae (strain ATCC 700971 / NCTC 13129 / Biotype
gravis) GN=recF PE=3 SV=1
Length = 397
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 25/146 (17%)
Query: 666 QYPSTISFLNLLN---------ALIAE-----EKDVSDRGRRFVGIFRFVYDHVFGPFPQ 711
+Y ST+ F +++ A++AE +K++ DRG VG R D V G +P
Sbjct: 232 RYVSTVPFADVVELPSPEEFEAAMLAELGQCRDKEI-DRGVSLVGPHRDDLDVVLGDYPA 290
Query: 712 RAYADPCEKWQLVVAC-LKHFHMILN--------MYDI-QEEDIDNAVEQSSTLTQSSPI 761
+ +A E W + ++ L FH++ N + D+ E D + S ++ +
Sbjct: 291 KGFASHGETWSMCLSLRLAEFHLLRNDGTDPVLILDDVFAELDTQRREKLVSVTAEAEQV 350
Query: 762 QMQLPVLELLKDFMSGKAVFRNIMGI 787
+ V + L D ++ AV R+ + +
Sbjct: 351 LITAAVGDDLPDTLTESAVHRHFVSV 376
>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica
GN=DCL2B PE=2 SV=2
Length = 1377
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 1637 LFGMMSSL-FSSDLENLTFSQSARSLENQRKSELKKFQLCFSLSSYLYFMVTKKSLRLQV 1695
+FGM +SL +S DL +S+ +EN S++ +LS Y+ F TK
Sbjct: 197 IFGMSASLIYSKDLNQHNYSKQISEIENLMNSKVYTVDSESALSEYIPFASTKIV----- 251
Query: 1696 SRSLDDYNTNSGLQQLTLTSLGSLLNSATAVLERAAEEKSLLLNKIRDINELSRQEVDEV 1755
DD N +S L L+ L L L+R SL K R I++L R V +
Sbjct: 252 --HFDDSNISSELHANILSCLNRLTKKHIEALDRKLHGSSLENAKQR-ISKLHRTFVYCL 308
Query: 1756 INMCV 1760
N+ V
Sbjct: 309 YNLGV 313
>sp|Q9SIE1|PAT_ARATH Bifunctional aspartate aminotransferase and
glutamate/aspartate-prephenate aminotransferase
OS=Arabidopsis thaliana GN=PAT PE=1 SV=2
Length = 475
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 449 SLLEFVSEIYQKEPELLSGNDVLWTFVVFAGEDHTNFQTLVAFLKMLSTLASSQEGASKV 508
SLLE ++ I K P LL +D ++ +++A HT+F +L + T+ G S
Sbjct: 252 SLLEEIARIIAKHPRLLVLSDEIYEHIIYAPATHTSFASLPDMYERTLTV----NGFS-- 305
Query: 509 YELLQGKAFRSIGWR 523
KAF GWR
Sbjct: 306 ------KAFAMTGWR 314
>sp|A5FVN2|HIS8_ACICJ Histidinol-phosphate aminotransferase OS=Acidiphilium cryptum (strain
JF-5) GN=hisC PE=3 SV=1
Length = 364
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 1491 LALLLRISHKYGKSGAQVLFSM-GSLEHIASCKAVGLQGSLRRVATKPRRALGGDIDRQR 1549
+ALL++ YG G +++ S G L + + + G+ V P R L DID
Sbjct: 93 IALLIQ---SYGGPGTELVMSRHGFLIYEIAARLAGMN-----VRKAPERNLTADIDAML 144
Query: 1550 MIVTPMLRLVF------SLTSLVDTSDFFEVKNKVVREVMDFIKGHQLLVDQVLQENISE 1603
VTP RLVF SLV SD ++ ++ +V+ L++D E +
Sbjct: 145 AEVTPATRLVFLANPNNPTGSLVPASDVSRLRAELPPDVL-------LVLDAAYAEYVER 197
Query: 1604 AD 1605
AD
Sbjct: 198 AD 199
>sp|Q90977|E2F1_CHICK Transcription factor E2F1 OS=Gallus gallus GN=E2F1 PE=2 SV=1
Length = 403
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 1691 LRLQVSRSLDDYNTNSGLQQLTLTSLGSLLNSATAVLERAAEEKSLLLNKIRDINELSRQ 1750
L++Q R D N G+Q +T S ++ + V A+ + LL ++RD+ RQ
Sbjct: 137 LKVQKRRIYDITNVLEGIQLITKKSKNNIQWLGSQVAAGASSRQRLLEKELRDLQAAERQ 196
Query: 1751 EVDEVINMC-VREDYVSSSDNIQKRRYVAMVEMCQVAGNRDQLITLLLLLTEHVLNV 1806
+D++I C VR ++ + Q YV ++ + +Q++ ++ E L V
Sbjct: 197 -LDDLIQTCTVRLRLLTEDPSNQHAAYVTCQDLRSIVDPSEQMVMVIKAPPETQLQV 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 642,881,631
Number of Sequences: 539616
Number of extensions: 26442537
Number of successful extensions: 73131
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 73105
Number of HSP's gapped (non-prelim): 29
length of query: 1885
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1753
effective length of database: 120,340,147
effective search space: 210956277691
effective search space used: 210956277691
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)