Query 000193
Match_columns 1885
No_of_seqs 185 out of 250
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 00:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vdy_A Hypothetical protein (R 19.8 5.6E+02 0.019 26.4 10.4 56 966-1026 45-100 (140)
2 1nwd_B GAD, glutamate decarbox 5.7 4.2E+02 0.015 18.8 2.6 15 1228-1242 9-23 (28)
3 3h3g_B Parathyroid hormone-rel 5.5 2.2E+02 0.0077 20.4 1.1 11 1862-1872 1-11 (24)
4 3b84_A Zinc finger and BTB dom 5.1 4.6E+02 0.016 25.5 3.7 53 32-94 42-108 (119)
5 1r29_A B-cell lymphoma 6 prote 4.6 6.4E+02 0.022 24.6 4.5 55 32-93 47-116 (127)
6 2r2v_A GCN4 leucine zipper; co 4.6 8.1E+02 0.028 19.0 3.7 28 1720-1747 3-30 (34)
7 1xqr_A HSPBP1 protein; armadil 4.5 7.9E+02 0.027 28.2 5.7 59 554-615 95-156 (296)
8 4db6_A Armadillo repeat protei 4.3 2.3E+03 0.077 21.8 9.1 90 1412-1521 99-188 (210)
9 3ohu_A Transcription regulator 4.2 3.6E+02 0.012 26.4 2.2 53 32-92 50-117 (125)
10 4db8_A Armadillo-repeat protei 4.1 2.4E+03 0.083 22.3 9.4 81 1425-1521 150-230 (252)
No 1
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=19.82 E-value=5.6e+02 Score=26.41 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=43.0
Q ss_pred chHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhhcCCCCCHHHHHHHhcchhhhHHHhhhh
Q 000193 966 SCLKIILEILEKVSKPDVNALLHEFGFQLLYELCLDPLTCGPTMDLLSNKKYQFFVKHLDA 1026 (1885)
Q Consensus 966 ScLhsIL~lL~~~~~~~~~p~L~e~~~~lL~~Lc~~p~Ts~~~L~~LR~~~~dFf~~~L~~ 1026 (1885)
+.++-|++.|.+... +..|+.+-+|++||-.||.+. |+.+.+.+|.+- ...+.+..
T Consensus 45 ~~~~eim~~L~kRL~-~k~~~vk~KaL~lL~yL~~~G--s~~f~~~~r~~~--~~Ik~l~~ 100 (140)
T 1vdy_A 45 SIVKEFSEFILKRLD-NKSPIVKQKALRLIKYAVGKS--GSEFRREMQRNS--VAVRNLFH 100 (140)
T ss_dssp HHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHTT--HHHHTTTT
T ss_pred hHHHHHHHHHHHHhc-CCCcceeehHHHHHHHHHHhC--CHHHHHHHHHhH--HHHHHHHh
Confidence 456778888877765 345889999999999999877 688889999874 34555554
No 2
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=5.71 E-value=4.2e+02 Score=18.83 Aligned_cols=15 Identities=47% Similarity=0.893 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 000193 1228 AAQLHMLTGWSQVVE 1242 (1885)
Q Consensus 1228 ~a~l~~L~aW~qLv~ 1242 (1885)
..|+.++.+|..+|+
T Consensus 9 evqlemitawkkfve 23 (28)
T 1nwd_B 9 EVQLEMITAWKKFVE 23 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 346788999999886
No 3
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=5.53 E-value=2.2e+02 Score=20.36 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=8.6
Q ss_pred CchHHHHHHhh
Q 000193 1862 GRDLKVFRRLV 1872 (1885)
Q Consensus 1862 ~~~~~~~~~~~ 1872 (1885)
||+++.|+|..
T Consensus 1 grs~Q~~rRr~ 11 (24)
T 3h3g_B 1 GKSIQDLRRRF 11 (26)
T ss_dssp -CCHHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 88999999864
No 4
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=5.06 E-value=4.6e+02 Score=25.47 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=35.5
Q ss_pred HHHHhHHHHHhcccCCCCChhhhhhhhcCceEcCCC--------------CccccCHHHHHHHHHHhhhcCCCHHHH
Q 000193 32 AIHNSLSSFKSLLSYPPPKPSDRAQVQSREVRLPDS--------------PPISLDDQDVQIALKLSDDLHLNEVDC 94 (1885)
Q Consensus 32 ~L~~~~~df~~ll~~ppkn~~sR~~l~sg~V~l~~~--------------~~~~ln~~fi~~al~LSD~ldLdEi~a 94 (1885)
.|..+-+-|++++..+. ++.|+++|. ++..++++-+.+.+.+||.|+++++..
T Consensus 42 vLaa~S~yF~~~f~~~~----------~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~ 108 (119)
T 3b84_A 42 VLACCSHFFQSLYGDGS----------GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVE 108 (119)
T ss_dssp HHHHHCHHHHHHHTTTT----------CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHH
T ss_pred HHhhcCHHHHHHHCCCC----------CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHH
Confidence 66777788888877643 345666653 134466666777788888888777653
No 5
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=4.64 E-value=6.4e+02 Score=24.59 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=37.9
Q ss_pred HHHHhHHHHHhcccCCCCChhhhhhhhcCceEc-CCCC--------------ccccCHHHHHHHHHHhhhcCCCHHH
Q 000193 32 AIHNSLSSFKSLLSYPPPKPSDRAQVQSREVRL-PDSP--------------PISLDDQDVQIALKLSDDLHLNEVD 93 (1885)
Q Consensus 32 ~L~~~~~df~~ll~~ppkn~~sR~~l~sg~V~l-~~~~--------------~~~ln~~fi~~al~LSD~ldLdEi~ 93 (1885)
.|..+-+-|++++..+.+. ..+.|++ ++.+ +..++++.+.+.+.+|+.|+++++.
T Consensus 47 iLaa~S~~F~~~f~~~~~e-------~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~ 116 (127)
T 1r29_A 47 VLMACSGLFYSIFTDQLKR-------NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVV 116 (127)
T ss_dssp HHHHHCHHHHHHHTSTTTT-------TCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCHHHHHHhcCCccC-------CCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHH
Confidence 6777888888888766543 3456788 5431 3446677777777778877777764
No 6
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=4.62 E-value=8.1e+02 Score=19.04 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 000193 1720 LNSATAVLERAAEEKSLLLNKIRDINEL 1747 (1885)
Q Consensus 1720 l~~~~~~~~~~~~~~~~~~~kl~~~~~l 1747 (1885)
++|+.+-++....+++.+.+-...+.+|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6888889999999998888877665543
No 7
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=4.46 E-value=7.9e+02 Score=28.22 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHhcCccccccccC---CChHHHHHhccCCCCChhHHHHHHHHHHHhhhcC
Q 000193 554 DAKALVAYLNVLQKVMENGNSIERKNWF---PDIEPLFKLLSYENVPPYLKGALRNAIAACIHVS 615 (1885)
Q Consensus 554 e~~~L~a~L~Li~~V~~~~~~~e~~~w~---~~i~~L~~Ll~~~~vp~~Lka~i~~~Laal~~~s 615 (1885)
+...-..-+..|+.++.+++ +.++.. ..+++|..|+. ...+..++.....+|+.+++..
T Consensus 95 ~~~vr~~Aa~~Lg~ia~~n~--~~~~~vv~~g~l~~Ll~LL~-~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 95 AAGLRWRAAQLIGTCSQNVA--AIQEQVLGLGALRKLLRLLD-RDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp SHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHHH-HCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHhCCH--HHHHHHHHCCCHHHHHHHHc-cCCCHHHHHHHHHHHHHHHcCC
Confidence 34556677888999998876 333221 45778889987 3456889999999999999843
No 8
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=4.31 E-value=2.3e+03 Score=21.77 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=60.2
Q ss_pred hHHHHHHhhcccCCCcchHHHHHHHHHHHHhccCchhHHHHHhhcCcHHHHHHHhhhhhhhcccCCcchhhHHHHHHHHH
Q 000193 1412 QAILDLFIKDATQGSEPGKTLSLYVLDALICIDHEKYFLNQLQSRGFLRSCLMNVSNVSYQDGKRSLDTLQRACTLEAEL 1491 (1885)
Q Consensus 1412 e~LidvIc~DA~~G~~~~r~~Al~lLd~Lv~l~~~~~il~~L~~~g~L~~~v~sl~~~~L~~~l~~~~~l~~L~~yea~m 1491 (1885)
..|++.+.+ ++...|..|..+|..|..- .......+...|.+..+++-+++. + -.+-+.-+
T Consensus 99 ~~L~~lL~~----~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~-------~------~~v~~~a~ 159 (210)
T 4db6_A 99 PALVQLLSS----PNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSP-------N------EQILQEAL 159 (210)
T ss_dssp HHHHHHTTC----SCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCS-------C------HHHHHHHH
T ss_pred HHHHHHHcC----CcHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCcHHHHHHHHcCC-------C------HHHHHHHH
Confidence 445555433 3455666666666655542 234455667889999998887642 1 23556777
Q ss_pred HHHHHhhcccCcchHHHHHhcchHHHhhhc
Q 000193 1492 ALLLRISHKYGKSGAQVLFSMGSLEHIASC 1521 (1885)
Q Consensus 1492 alLlRiAq~~tr~GA~~Ll~~~l~~~L~~~ 1521 (1885)
..|..++.. ++...+.+.+.|++..|.++
T Consensus 160 ~aL~~l~~~-~~~~~~~~~~~g~i~~L~~l 188 (210)
T 4db6_A 160 WALSNIASG-GNEQKQAVKEAGALEKLEQL 188 (210)
T ss_dssp HHHHHHHTS-CHHHHHHHHHTTHHHHHHHG
T ss_pred HHHHHHHcC-CcHHHHHHHHCCCHHHHHHH
Confidence 788888884 47788899999999998774
No 9
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=4.17 E-value=3.6e+02 Score=26.37 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=33.7
Q ss_pred HHHHhHHHHHhcccCCCCChhhhhhhhcCceEcCCC---------------CccccCHHHHHHHHHHhhhcCCCHH
Q 000193 32 AIHNSLSSFKSLLSYPPPKPSDRAQVQSREVRLPDS---------------PPISLDDQDVQIALKLSDDLHLNEV 92 (1885)
Q Consensus 32 ~L~~~~~df~~ll~~ppkn~~sR~~l~sg~V~l~~~---------------~~~~ln~~fi~~al~LSD~ldLdEi 92 (1885)
.|..+-+-|++++..+.+. ...|.++++ ++..++++.+.+.+.+|+.|+++++
T Consensus 50 vLaa~S~yF~~~f~~~~~e--------~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L 117 (125)
T 3ohu_A 50 VLAACSEYFWQALVGQTKN--------DLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNL 117 (125)
T ss_dssp HHHHHBHHHHHHHTTCCCS--------SCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSC
T ss_pred HHHHcCHHHHHHhcCCCCC--------CcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHH
Confidence 6677778888888766542 345777762 1344566666666666666666544
No 10
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=4.09 E-value=2.4e+03 Score=22.25 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=55.9
Q ss_pred CCcchHHHHHHHHHHHHhccCchhHHHHHhhcCcHHHHHHHhhhhhhhcccCCcchhhHHHHHHHHHHHHHHhhcccCcc
Q 000193 1425 GSEPGKTLSLYVLDALICIDHEKYFLNQLQSRGFLRSCLMNVSNVSYQDGKRSLDTLQRACTLEAELALLLRISHKYGKS 1504 (1885)
Q Consensus 1425 G~~~~r~~Al~lLd~Lv~l~~~~~il~~L~~~g~L~~~v~sl~~~~L~~~l~~~~~l~~L~~yea~malLlRiAq~~tr~ 1504 (1885)
++...|..|..+|..|..-+ ......+...|.+..+++-+++. .-.+-+.-+..|..++.. ++.
T Consensus 150 ~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll~~~-------------~~~v~~~a~~~L~~l~~~-~~~ 213 (252)
T 4db8_A 150 PNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSP-------------NEQILQEALWALSNIASG-GNE 213 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHGGGCS-------------SHHHHHHHHHHHHHHTTS-CHH
T ss_pred CCHHHHHHHHHHHHHHHcCC--hHHHHHHHHCCCHHHHHHHHCCC-------------CHHHHHHHHHHHHHHhcC-CHH
Confidence 34555666666665555432 34456677889999988877642 123456677888888864 577
Q ss_pred hHHHHHhcchHHHhhhc
Q 000193 1505 GAQVLFSMGSLEHIASC 1521 (1885)
Q Consensus 1505 GA~~Ll~~~l~~~L~~~ 1521 (1885)
+.+.+++.|++..|.++
T Consensus 214 ~~~~~~~~g~i~~L~~l 230 (252)
T 4db8_A 214 QKQAVKEAGALEKLEQL 230 (252)
T ss_dssp HHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHCCcHHHHHHH
Confidence 88899999999998764
Done!