Query 000193
Match_columns 1885
No_of_seqs 185 out of 250
Neff 7.1
Searched_HMMs 13730
Date Tue Mar 26 00:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000193.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/000193hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m3ka2 c.95.1.1 (A:269-392) B 4.7 67 0.0049 30.2 -0.4 41 51-91 26-66 (124)
2 d1afwa2 c.95.1.1 (A:294-417) T 4.4 73 0.0053 29.9 -0.3 41 51-91 28-68 (124)
3 d1upka_ a.118.1.15 (A:) Mo25 p 4.4 1.7E+03 0.12 23.3 13.7 166 850-1056 156-321 (330)
4 d1h3ob_ a.22.1.3 (B:) TAF(II)- 4.1 4.9E+02 0.036 21.7 4.9 33 134-166 9-41 (74)
5 d1aisb2 a.74.1.2 (B:1206-1300) 3.5 4.9E+02 0.035 22.1 4.7 46 82-129 9-57 (95)
6 d1w9ca_ a.118.1.19 (A:) Export 3.2 2E+03 0.15 22.3 12.6 97 1245-1362 57-154 (321)
7 d1lvaa3 a.4.5.35 (A:511-574) C 3.0 1.5E+02 0.011 24.1 0.4 37 82-126 28-64 (64)
8 d1bpoa1 a.118.1.4 (A:331-487) 2.9 3.7E+02 0.027 25.8 3.2 102 1495-1605 19-130 (157)
9 d1khda1 a.46.2.1 (A:12-80) Ant 2.8 3E+02 0.022 22.3 2.2 27 1735-1761 3-29 (69)
10 d1xqra1 a.118.1.21 (A:87-350) 2.5 7.3E+02 0.053 24.5 5.6 72 550-622 68-140 (264)
No 1
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]}
Probab=4.73 E-value=67 Score=30.17 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=36.0
Q ss_pred hhhhhhhhcCceEcCCCCccccCHHHHHHHHHHhhhcCCCH
Q 000193 51 PSDRAQVQSREVRLPDSPPISLDDQDVQIALKLSDDLHLNE 91 (1885)
Q Consensus 51 ~~sR~~l~sg~V~l~~~~~~~ln~~fi~~al~LSD~ldLdE 91 (1885)
.+-|+-+++-+++++|.+-+.+||.|.-.++...++|++|+
T Consensus 26 ~A~~~lL~r~gl~~~Did~~EinEAFA~q~la~~~~l~id~ 66 (124)
T d1m3ka2 26 PASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDP 66 (124)
T ss_dssp HHHHHHHHHHTCCGGGCSEEEECCSBHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCChhcccHHHhcccchhheeeehHhhCCCh
Confidence 45567777788999999999999999999999999999987
No 2
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.44 E-value=73 Score=29.92 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=35.5
Q ss_pred hhhhhhhhcCceEcCCCCccccCHHHHHHHHHHhhhcCCCH
Q 000193 51 PSDRAQVQSREVRLPDSPPISLDDQDVQIALKLSDDLHLNE 91 (1885)
Q Consensus 51 ~~sR~~l~sg~V~l~~~~~~~ln~~fi~~al~LSD~ldLdE 91 (1885)
.+-++-+++.+++++|-+-+.+|+.|.-.++...++|++|+
T Consensus 28 ~Ai~klL~r~gl~~~Did~~EinEAFA~q~l~~~~~l~id~ 68 (124)
T d1afwa2 28 YAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDL 68 (124)
T ss_dssp HHHHHHHHHHTCCGGGCSEEEECCSBHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHcCCCcccCcEEEeccchhHHHHHHHHHcCCCh
Confidence 34566777788999999999999999999999999999874
No 3
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.41 E-value=1.7e+03 Score=23.32 Aligned_cols=166 Identities=16% Similarity=0.237 Sum_probs=105.1
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHhhhHHhHHHHHhccchhHHHHHHHHHHhccccccccccccCCCChHHHHHHH
Q 000193 850 QIVALLEYVRYDFLPQIQQCSIKIMSILSSRMVGLVQLLLKYNAASSLVEDYAACLELRSEESQIIEKSGDDPGVLIMQL 929 (1885)
Q Consensus 850 ~I~~l~~yv~~~~~p~ial~AikIL~~ls~~~~~l~~~l~~~~es~~I~~~fv~~Le~~~~~~~~~e~~~~~~k~~IL~l 929 (1885)
.+..+-.||..++ -+|+..|...++.+-.+.+.++.-+.+.+ -......|-..|+. ++.-+|..-+.|
T Consensus 156 ~f~~fF~yv~~~~-FdiasDAf~TfkelLt~hk~~~aefl~~N-yd~Ff~~~~~LL~s----------~NYVtrRqSlKL 223 (330)
T d1upka_ 156 QFYDFFRYVEMST-FDIASDAFATFKDLLTRHKLLSAEFLEQH-YDRFFSEYEKLLHS----------ENYVTKRQSLKL 223 (330)
T ss_dssp GGGHHHHHTTCSS-HHHHHHHHHHHHHHHHSSHHHHHHHHHHT-HHHHHHHHHHHTTC----------SSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHhCHHHHHHHHHHh-HHHHHHHHHHHhcC----------CchHHHHHHHHH
Confidence 3556778888887 89999999999998877776666555432 23344445444432 345678888888
Q ss_pred HHhcCCCCCChHhhhhhccccCCCCccccccCCCCcchHHHHHHHHHhcCCCCCchhHHHHHHHHHHHhhcCCCCCHHHH
Q 000193 930 LIDNISRPAPNITHLLLKFDLDTPIERTVLQPKFHYSCLKIILEILEKVSKPDVNALLHEFGFQLLYELCLDPLTCGPTM 1009 (1885)
Q Consensus 930 Ll~~L~~~~PnlAHlLLGF~~~~~~~~~~l~p~~~~ScLhsIL~lL~~~~~~~~~p~L~e~~~~lL~~Lc~~p~Ts~~~L 1009 (1885)
|-+-+-.+ .|..-. .-| + +...-|..++.+|.+ ....+---+|+++..-.+||.-+.+|.
T Consensus 224 LgelLldr-~N~~vm-~~Y----------v---s~~~nLkl~M~LLrd-----~sk~Iq~EAFhVFKvFVANpnKp~~I~ 283 (330)
T d1upka_ 224 LGELLLDR-HNFTIM-TKY----------I---SKPENLKLMMNLLRD-----KSRNIQFEAFHVFKVFVANPNKTQPIL 283 (330)
T ss_dssp HHHHHHSG-GGHHHH-HHH----------T---TCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHHHCSSCCHHHH
T ss_pred HHHHHhhh-hHHHHH-HHH----------h---CCHHHHHHHHHHhcC-----chhhHHHHhhhHhhhhhcCCCCCHHHH
Confidence 88877211 222111 111 1 011256667777754 335677889999999999999999999
Q ss_pred HHHhcchhhhHHHhhhhcCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 000193 1010 DLLSNKKYQFFVKHLDAIGVAPLPKRNSNQALRISSLHQRAWLLKLL 1056 (1885)
Q Consensus 1010 ~~LR~~~~dFf~~~L~~~~i~~~p~~~~~~~~~~s~L~~rs~lL~~~ 1056 (1885)
..|..++ +=+.+.+..-. +... ..+ .|..-++++++-+
T Consensus 284 ~IL~~Nr-~kLl~fl~~f~----~d~~-~De---qF~~EK~~lI~~I 321 (330)
T d1upka_ 284 DILLKNQ-AKLIEFLSKFQ----NDRT-EDE---QFNDEKTYLVKQI 321 (330)
T ss_dssp HHHHHTH-HHHHHHHHHTT----TTC--CCS---HHHHHHHHHHHHH
T ss_pred HHHHHhH-HHHHHHHHhCC----CCCC-chh---hHHHHHHHHHHHH
Confidence 9999887 43355555422 1111 112 5777788887765
No 4
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.14 E-value=4.9e+02 Score=21.74 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=26.0
Q ss_pred HHHHHHhhhcccCcchHHHHHHHHHHHHHhhch
Q 000193 134 LYILFRAVVLDQGLEEDIVVDIQKYLEDLVNTG 166 (1885)
Q Consensus 134 Lr~Ll~~~~~~~~l~~~~~~~v~~~~~~l~~~~ 166 (1885)
|..|++....+..++|++.+.+.+++++++++.
T Consensus 9 L~eLv~~idp~~~ld~~vee~ll~iADdFV~~V 41 (74)
T d1h3ob_ 9 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESV 41 (74)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 455666666778899999999999998888754
No 5
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=3.53 E-value=4.9e+02 Score=22.13 Aligned_cols=46 Identities=24% Similarity=0.363 Sum_probs=29.1
Q ss_pred HHhhhcCCCHH--HHH-HHHHhhcccccccCCChhhhhhhHhhHhHHhhHH
Q 000193 82 KLSDDLHLNEV--DCV-RLLVSANQECGLMGRDPIEILRLASGLWYTERRD 129 (1885)
Q Consensus 82 ~LSD~ldLdEi--~a~-eLL~~a~~~~~~~~~~~~~l~r~a~~lyy~~Rr~ 129 (1885)
.+++.|+|.+- ..| ++.-.+.+.....|++|..+ +|+.+|+--|..
T Consensus 9 R~~~~L~L~~~i~~~A~~i~~~~~~~~~~~Gr~p~~v--aAA~iY~a~r~~ 57 (95)
T d1aisb2 9 KFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGL--VAAALYIASLLE 57 (95)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHH--HHHHHHHHHHHT
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHcCCcCCCcHHhH--HHHHHHHHHHHc
Confidence 45778888873 333 34444565666778888554 577888776653
No 6
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.17 E-value=2e+03 Score=22.31 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=52.4
Q ss_pred HhcccccchhhHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCccchhhhhhcccccc
Q 000193 1245 VSRRISALGNRSEILYQILDACLGASASPDCSLRMAFILCQVALTCMAKLRDEKFLCPGGLNSDSVTFLDVIMVKQLSNG 1324 (1885)
Q Consensus 1245 ~s~~~~~~~~r~~~Il~~L~~il~ki~~~~~~~~~a~~Ls~l~l~Ll~~Lr~~~~~~~~~~~~~~~~~~d~~~~~~L~~~ 1324 (1885)
+......-....+++=++++.++.+-.....+...++.| +++-++..++...- .| . ++.
T Consensus 57 i~~~~d~~~v~~~~i~pl~~~vL~DY~~~~p~~R~~eVL-~l~~~ii~kl~~~~--------------~~----~-v~~- 115 (321)
T d1w9ca_ 57 VSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVL-STMAIIVNKLGGHI--------------TA----E-IPQ- 115 (321)
T ss_dssp HTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHH-HHHHHHHHHHGGGG--------------GG----G-HHH-
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhCchhhccHhHH-HHHHHHHHHHHHhh--------------hh----H-HHH-
Confidence 333333334566778888888887654421222222222 34444556666531 00 0 111
Q ss_pred hhHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhh
Q 000193 1325 ACHSLLFKLIMAILRNE-SSEALRRRQYALLLSYFQYCQ 1362 (1885)
Q Consensus 1325 ~~~~iL~~ll~~Il~~~-ss~~lR~~lY~~ll~yLq~~~ 1362 (1885)
=+..+...++.-|.+-- .-|..|.++|..+-+..++|.
T Consensus 116 I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf 154 (321)
T d1w9ca_ 116 IFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCF 154 (321)
T ss_dssp HHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCH
Confidence 01122333377776554 569999999999987777764
No 7
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=2.97 E-value=1.5e+02 Score=24.08 Aligned_cols=37 Identities=11% Similarity=0.308 Sum_probs=27.5
Q ss_pred HHhhhcCCCHHHHHHHHHhhcccccccCCChhhhhhhHhhHhHHh
Q 000193 82 KLSDDLHLNEVDCVRLLVSANQECGLMGRDPIEILRLASGLWYTE 126 (1885)
Q Consensus 82 ~LSD~ldLdEi~a~eLL~~a~~~~~~~~~~~~~l~r~a~~lyy~~ 126 (1885)
-++++++++|=.+-++|--..++. .++++..-.|||+
T Consensus 28 dl~~~l~~~e~~~~~lL~~l~~~G--------~lvkI~~d~yfhr 64 (64)
T d1lvaa3 28 EVAGSFNLDPSELEELLHYLVREG--------VLVKINDEFYWHR 64 (64)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTT--------SEEESSSSBEEEH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC--------CEEEecccccccC
Confidence 378899999999988888765442 3666677788874
No 8
>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.92 E-value=3.7e+02 Score=25.78 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=55.5
Q ss_pred HHhhcccCcchHHHHHhcchHHHhhhcccccccCcccccccCCCcc--CCchhhhhhHh------HHHHHHHHHHHhhhh
Q 000193 1495 LRISHKYGKSGAQVLFSMGSLEHIASCKAVGLQGSLRRVATKPRRA--LGGDIDRQRMI------VTPMLRLVFSLTSLV 1566 (1885)
Q Consensus 1495 lRiAq~~tr~GA~~Ll~~~l~~~L~~~~~l~~~P~~~~~~~~~~~~--~p~~~~ry~~l------L~PvlrL~~svl~~~ 1566 (1885)
+|+|.++.=-||..|.....=+.+.+-+|-.+- ......|..+ .|..++||.++ ..|+|+-+.+++..
T Consensus 19 ~~lA~r~~LpGAd~l~~~~F~~lf~~g~y~eAA---~~aA~sP~giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~- 94 (157)
T d1bpoa1 19 LRMAVRNNLAGAEELFARKFNALFAQGNYSEAA---KVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQ- 94 (157)
T ss_dssp HHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHH---HHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHH-
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHcCCHHHHH---HHHHhCCcccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhc-
Confidence 667766555677776555444444443333221 0001122222 24566666554 55899988654443
Q ss_pred ccCCccchh-HHHHHHHHHHHHHHH-HHHHHHHhcCcCCCC
Q 000193 1567 DTSDFFEVK-NKVVREVMDFIKGHQ-LLVDQVLQENISEAD 1605 (1885)
Q Consensus 1567 ~s~G~~~~n-~~~~~qv~~Fl~~h~-~lv~~vLr~~~~~~~ 1605 (1885)
| .=| ...+.-++--|..+| ++++.-++.+-+..+
T Consensus 95 ---~--~LN~~ESlEl~r~vL~q~r~~lve~Wl~e~KL~~S 130 (157)
T d1bpoa1 95 ---G--QLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECS 130 (157)
T ss_dssp ---S--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCSCCC
T ss_pred ---C--CCchHHhHHHHHHHHhcCcHHHHHHHHHcCCccCc
Confidence 3 233 334444444455555 899999999888755
No 9
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=2.83 E-value=3e+02 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=22.8
Q ss_pred HHHHHHhhhhhccChhhHHHHHhhhcc
Q 000193 1735 SLLLNKIRDINELSRQEVDEVINMCVR 1761 (1885)
Q Consensus 1735 ~~~~~kl~~~~~l~~~e~~el~~~~~~ 1761 (1885)
..+.+|+.+..+|+.+|..++....+.
T Consensus 3 ~~il~kl~~g~~Ls~ee~~~~~~~i~~ 29 (69)
T d1khda1 3 QPILEKLFKSQSMTQEESHQLFAAIVR 29 (69)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 456888899999999999998887664
No 10
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.50 E-value=7.3e+02 Score=24.53 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCcchHHHHHHHHHHHHHHHhcCccccccccC-CChHHHHHhccCCCCChhHHHHHHHHHHHhhhcChhhHHHH
Q 000193 550 FQEGDAKALVAYLNVLQKVMENGNSIERKNWF-PDIEPLFKLLSYENVPPYLKGALRNAIAACIHVSLVMKDNI 622 (1885)
Q Consensus 550 ~~~~e~~~L~a~L~Li~~V~~~~~~~e~~~w~-~~i~~L~~Ll~~~~vp~~Lka~i~~~Laal~~~s~~~a~~i 622 (1885)
+..++...-..-+..|+.++++++.+...-+. ..++.|..++. ..-++.++..+..+|+.++..++.....+
T Consensus 68 l~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 140 (264)
T d1xqra1 68 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD-RDACDTVRVKALFAISCLVREQEAGLLQF 140 (264)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-HCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhh-cCCCHHHHHHHHHHHHHHhccchhhHHHH
Done!