Query 000194
Match_columns 1880
No_of_seqs 493 out of 2428
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 22:52:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0891 DNA-dependent protein 100.0 4E-152 9E-157 1533.0 124.4 1759 24-1877 5-1817(2341)
2 KOG0890 Protein kinase of the 100.0 2.5E-56 5.5E-61 582.2 77.0 639 1192-1874 1237-1967(2382)
3 COG5032 TEL1 Phosphatidylinosi 100.0 3.5E-53 7.6E-58 595.9 73.5 1512 275-1877 50-1622(2105)
4 KOG0889 Histone acetyltransfer 100.0 5.5E-39 1.2E-43 431.0 122.1 562 1209-1846 2336-2967(3550)
5 KOG2171 Karyopherin (importin) 100.0 1.3E-41 2.7E-46 423.4 57.9 679 43-787 223-985 (1075)
6 KOG2023 Nuclear transport rece 100.0 1.4E-37 3.1E-42 359.5 44.0 619 21-761 125-819 (885)
7 PF02259 FAT: FAT domain; Int 100.0 1.4E-36 3.1E-41 376.1 30.4 311 1430-1774 1-352 (352)
8 KOG2171 Karyopherin (importin) 100.0 2.3E-29 5.1E-34 314.4 78.6 904 23-1116 3-1024(1075)
9 KOG1241 Karyopherin (importin) 100.0 2.1E-29 4.6E-34 298.2 62.6 751 52-1106 22-820 (859)
10 COG5215 KAP95 Karyopherin (imp 100.0 8.1E-24 1.8E-28 241.5 59.7 691 52-1037 26-780 (858)
11 KOG0892 Protein kinase ATM/Tel 100.0 8.8E-26 1.9E-30 298.9 39.7 621 1185-1876 1617-2381(2806)
12 KOG2023 Nuclear transport rece 99.9 1.3E-25 2.8E-30 261.0 33.5 500 556-1115 170-750 (885)
13 KOG1824 TATA-binding protein-i 99.9 2.1E-20 4.6E-25 225.5 71.4 801 151-1114 46-900 (1233)
14 KOG1824 TATA-binding protein-i 99.9 2.9E-19 6.3E-24 215.9 71.9 868 12-1058 116-1095(1233)
15 KOG1241 Karyopherin (importin) 99.9 4.1E-20 8.9E-25 220.1 52.9 723 167-1117 15-788 (859)
16 PF11865 DUF3385: Domain of un 99.9 5.3E-24 1.1E-28 222.8 11.2 160 764-931 1-160 (160)
17 COG5215 KAP95 Karyopherin (imp 99.9 6.6E-18 1.4E-22 193.7 42.4 562 485-1118 117-732 (858)
18 KOG0213 Splicing factor 3b, su 99.7 3.6E-13 7.8E-18 159.3 53.6 725 111-1016 400-1141(1172)
19 KOG0213 Splicing factor 3b, su 99.7 1.2E-12 2.6E-17 154.9 52.4 549 123-800 488-1062(1172)
20 PLN03200 cellulose synthase-in 99.7 7.2E-12 1.6E-16 171.8 62.3 719 19-929 8-765 (2102)
21 PLN03200 cellulose synthase-in 99.6 6.9E-12 1.5E-16 172.0 54.2 748 124-1103 28-818 (2102)
22 KOG0915 Uncharacterized conser 99.6 3.6E-12 7.8E-17 163.3 47.5 587 70-728 819-1480(1702)
23 COG5181 HSH155 U2 snRNP splice 99.6 1.4E-12 3E-17 151.7 39.2 697 111-980 205-917 (975)
24 COG5181 HSH155 U2 snRNP splice 99.6 4.3E-12 9.2E-17 147.7 42.5 561 122-801 292-868 (975)
25 KOG0915 Uncharacterized conser 99.5 5.9E-10 1.3E-14 143.6 52.7 437 599-1081 998-1453(1702)
26 KOG0212 Uncharacterized conser 99.5 1.8E-12 3.9E-17 150.6 24.9 369 28-406 4-422 (675)
27 KOG1242 Protein containing ada 99.5 3.5E-12 7.7E-17 152.8 27.1 379 6-410 114-542 (569)
28 KOG1242 Protein containing ada 99.5 6.6E-11 1.4E-15 142.1 32.3 311 78-407 105-419 (569)
29 KOG0212 Uncharacterized conser 99.1 4.5E-07 9.8E-12 106.6 39.7 418 198-785 4-427 (675)
30 PTZ00429 beta-adaptin; Provisi 99.1 6.9E-07 1.5E-11 116.0 46.0 444 25-534 33-510 (746)
31 PF01602 Adaptin_N: Adaptin N 99.1 1.2E-07 2.5E-12 124.6 40.0 418 47-534 27-486 (526)
32 KOG1248 Uncharacterized conser 99.0 0.00042 9.2E-09 89.9 65.2 207 856-1108 696-910 (1176)
33 KOG1248 Uncharacterized conser 99.0 0.00047 1E-08 89.5 63.1 773 67-996 91-920 (1176)
34 PF01602 Adaptin_N: Adaptin N 99.0 5.9E-08 1.3E-12 127.4 29.4 438 503-1056 80-522 (526)
35 PTZ00429 beta-adaptin; Provisi 99.0 8.8E-06 1.9E-10 105.9 47.1 472 155-806 35-510 (746)
36 KOG1991 Nuclear transport rece 99.0 0.00059 1.3E-08 86.9 64.4 297 600-951 463-780 (1010)
37 KOG1992 Nuclear export recepto 99.0 0.00031 6.7E-09 87.1 55.2 683 109-912 5-776 (960)
38 KOG1943 Beta-tubulin folding c 98.9 0.00084 1.8E-08 86.2 61.3 202 190-410 337-550 (1133)
39 PRK09687 putative lyase; Provi 98.9 1.9E-07 4.1E-12 108.7 25.7 189 569-802 31-220 (280)
40 PRK09687 putative lyase; Provi 98.9 3E-07 6.5E-12 107.0 25.1 239 482-799 40-278 (280)
41 KOG1943 Beta-tubulin folding c 98.9 0.00081 1.8E-08 86.3 55.7 443 182-687 60-590 (1133)
42 PRK13800 putative oxidoreducta 98.8 1.8E-07 4E-12 127.8 24.9 271 506-924 625-895 (897)
43 KOG0166 Karyopherin (importin) 98.8 4.2E-07 9.1E-12 109.6 22.0 359 22-392 64-437 (514)
44 KOG1991 Nuclear transport rece 98.8 0.0027 5.8E-08 81.2 57.7 375 23-409 126-591 (1010)
45 KOG0211 Protein phosphatase 2A 98.7 3.2E-05 7E-10 99.4 34.9 552 123-802 94-663 (759)
46 KOG0166 Karyopherin (importin) 98.7 2.3E-06 4.9E-11 103.4 22.9 349 511-929 75-437 (514)
47 KOG2274 Predicted importin 9 [ 98.6 0.0062 1.3E-07 77.0 58.4 199 555-758 485-688 (1005)
48 KOG1060 Vesicle coat complex A 98.6 5.8E-05 1.3E-09 92.7 32.8 376 481-973 124-531 (968)
49 PF10508 Proteasom_PSMB: Prote 98.5 0.00029 6.2E-09 90.1 36.8 324 74-411 43-386 (503)
50 KOG1020 Sister chromatid cohes 98.5 0.0072 1.6E-07 80.3 48.7 149 146-308 810-958 (1692)
51 PRK13800 putative oxidoreducta 98.5 5.7E-06 1.2E-10 113.4 22.5 257 479-799 635-895 (897)
52 KOG0891 DNA-dependent protein 98.4 0.052 1.1E-06 78.4 58.4 184 605-802 535-718 (2341)
53 KOG0211 Protein phosphatase 2A 98.4 0.0018 3.9E-08 83.8 39.2 524 168-803 97-625 (759)
54 KOG1992 Nuclear export recepto 98.3 0.025 5.5E-07 70.9 54.5 413 658-1131 378-819 (960)
55 KOG1060 Vesicle coat complex A 98.3 0.00087 1.9E-08 82.8 32.9 476 73-650 39-550 (968)
56 PF10508 Proteasom_PSMB: Prote 98.2 0.00033 7.2E-09 89.5 29.0 311 29-350 43-366 (503)
57 KOG1062 Vesicle coat complex A 98.2 0.018 4E-07 72.2 40.3 408 290-802 116-543 (866)
58 TIGR02917 PEP_TPR_lipo putativ 98.2 0.044 9.5E-07 77.5 51.6 499 1290-1869 300-834 (899)
59 KOG0392 SNF2 family DNA-depend 98.2 0.04 8.6E-07 72.2 44.0 176 706-930 751-927 (1549)
60 PF12755 Vac14_Fab1_bd: Vacuol 98.1 2.1E-05 4.5E-10 74.8 11.2 92 169-266 2-93 (97)
61 PF12460 MMS19_C: RNAPII trans 98.1 0.0019 4.2E-08 80.9 30.7 300 25-330 91-413 (415)
62 KOG1059 Vesicle coat complex A 98.0 0.036 7.8E-07 68.5 38.1 231 483-799 127-361 (877)
63 TIGR02917 PEP_TPR_lipo putativ 98.0 0.32 6.9E-06 68.8 54.2 62 1569-1643 499-560 (899)
64 PF12348 CLASP_N: CLASP N term 97.9 0.00023 5E-09 81.8 17.3 183 163-355 17-211 (228)
65 PF12460 MMS19_C: RNAPII trans 97.9 0.017 3.6E-07 72.5 34.3 343 60-410 33-413 (415)
66 KOG1240 Protein kinase contain 97.9 0.00018 4E-09 92.4 16.3 218 166-391 436-685 (1431)
67 PF12348 CLASP_N: CLASP N term 97.9 0.0002 4.3E-09 82.4 14.7 180 609-802 17-205 (228)
68 KOG4535 HEAT and armadillo rep 97.9 0.059 1.3E-06 63.4 33.7 179 600-782 434-622 (728)
69 KOG1993 Nuclear transport rece 97.8 0.035 7.6E-07 69.4 32.2 258 168-433 412-695 (978)
70 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00013 2.8E-09 69.4 9.3 88 128-216 3-90 (97)
71 KOG1020 Sister chromatid cohes 97.7 0.11 2.3E-06 69.9 37.7 132 555-695 811-943 (1692)
72 KOG1062 Vesicle coat complex A 97.7 0.048 1E-06 68.6 32.9 312 104-444 136-470 (866)
73 KOG2274 Predicted importin 9 [ 97.7 0.33 7.2E-06 62.2 59.0 141 198-354 8-161 (1005)
74 KOG1993 Nuclear transport rece 97.7 0.0093 2E-07 74.2 26.5 253 857-1115 526-791 (978)
75 KOG1058 Vesicle coat complex C 97.7 0.032 7E-07 69.2 30.3 373 291-762 67-466 (948)
76 PF05004 IFRD: Interferon-rela 97.7 0.0044 9.6E-08 73.5 22.9 201 24-226 43-260 (309)
77 KOG1059 Vesicle coat complex A 97.7 0.34 7.4E-06 60.4 39.0 347 274-718 136-491 (877)
78 KOG1077 Vesicle coat complex A 97.7 0.19 4E-06 62.3 35.5 362 25-412 12-454 (938)
79 COG5064 SRP1 Karyopherin (impo 97.6 0.0014 3E-08 73.1 16.1 353 25-392 72-444 (526)
80 COG5240 SEC21 Vesicle coat com 97.6 0.31 6.8E-06 58.8 40.5 243 280-585 302-550 (898)
81 PF13513 HEAT_EZ: HEAT-like re 97.6 4.2E-05 9E-10 65.1 3.2 54 167-220 1-54 (55)
82 TIGR00990 3a0801s09 mitochondr 97.6 0.35 7.5E-06 64.7 41.3 81 1362-1448 135-215 (615)
83 TIGR00990 3a0801s09 mitochondr 97.6 0.56 1.2E-05 62.7 42.8 136 1567-1757 363-498 (615)
84 KOG4224 Armadillo repeat prote 97.5 0.0013 2.8E-08 74.0 13.7 407 616-1099 25-448 (550)
85 KOG2022 Nuclear transport rece 97.5 0.043 9.3E-07 69.7 27.5 159 633-801 458-617 (982)
86 KOG1240 Protein kinase contain 97.5 0.011 2.3E-07 77.0 22.5 293 74-395 427-729 (1431)
87 KOG2259 Uncharacterized conser 97.4 0.087 1.9E-06 64.7 27.5 270 154-442 199-527 (823)
88 KOG4224 Armadillo repeat prote 97.4 0.013 2.8E-07 66.4 19.2 398 601-1107 87-503 (550)
89 KOG2259 Uncharacterized conser 97.4 0.05 1.1E-06 66.7 25.3 266 115-406 203-526 (823)
90 PRK11447 cellulose synthase su 97.4 0.47 1E-05 68.3 40.5 406 1290-1796 274-701 (1157)
91 PF05804 KAP: Kinesin-associat 97.2 0.13 2.9E-06 67.0 29.5 418 143-631 210-652 (708)
92 COG5240 SEC21 Vesicle coat com 97.2 0.056 1.2E-06 64.9 22.3 104 81-189 236-339 (898)
93 COG5064 SRP1 Karyopherin (impo 97.1 0.0067 1.5E-07 67.8 13.9 340 65-423 68-425 (526)
94 PRK11447 cellulose synthase su 97.1 3.2 6.9E-05 59.9 45.1 194 1567-1797 301-526 (1157)
95 TIGR02270 conserved hypothetic 97.1 0.048 1E-06 67.1 22.3 179 562-802 88-266 (410)
96 PF05804 KAP: Kinesin-associat 97.1 0.089 1.9E-06 68.5 25.7 367 661-1097 268-649 (708)
97 KOG2956 CLIP-associating prote 97.1 0.014 3E-07 69.0 16.5 196 199-404 291-491 (516)
98 PF03378 CAS_CSE1: CAS/CSE pro 97.1 0.076 1.6E-06 66.0 24.0 259 854-1131 23-298 (435)
99 KOG2956 CLIP-associating prote 97.1 0.02 4.3E-07 67.7 17.5 160 142-313 319-480 (516)
100 KOG4653 Uncharacterized conser 97.1 0.056 1.2E-06 68.4 22.2 219 76-308 734-962 (982)
101 TIGR02270 conserved hypothetic 97.0 0.057 1.2E-06 66.4 22.0 214 504-808 88-301 (410)
102 KOG2032 Uncharacterized conser 97.0 0.53 1.2E-05 56.6 28.6 146 164-315 228-376 (533)
103 KOG4653 Uncharacterized conser 97.0 0.011 2.4E-07 74.4 15.7 223 570-802 736-963 (982)
104 KOG4535 HEAT and armadillo rep 97.0 0.23 5E-06 58.7 24.7 328 17-355 43-467 (728)
105 KOG1077 Vesicle coat complex A 96.9 1.2 2.7E-05 55.5 31.2 168 602-797 332-499 (938)
106 PF13513 HEAT_EZ: HEAT-like re 96.9 0.00062 1.3E-08 57.9 2.9 55 702-757 1-55 (55)
107 KOG4626 O-linked N-acetylgluco 96.9 0.5 1.1E-05 57.9 27.5 154 1569-1780 354-510 (966)
108 KOG0392 SNF2 family DNA-depend 96.9 3 6.6E-05 55.7 51.4 202 921-1134 755-960 (1549)
109 KOG1061 Vesicle coat complex A 96.9 0.78 1.7E-05 58.4 29.9 197 63-273 115-312 (734)
110 KOG1820 Microtubule-associated 96.9 0.027 5.9E-07 73.8 18.2 193 70-273 254-447 (815)
111 KOG1967 DNA repair/transcripti 96.8 0.011 2.3E-07 75.1 13.0 138 654-799 879-1020(1030)
112 KOG0168 Putative ubiquitin fus 96.8 0.27 5.9E-06 62.3 24.6 197 563-779 170-377 (1051)
113 PF13646 HEAT_2: HEAT repeats; 96.8 0.0095 2.1E-07 56.5 10.0 87 563-667 2-88 (88)
114 PRK11788 tetratricopeptide rep 96.7 0.8 1.7E-05 57.5 30.2 117 1291-1416 41-166 (389)
115 PLN03081 pentatricopeptide (PP 96.7 2.3 5.1E-05 57.8 36.2 330 1283-1644 187-556 (697)
116 COG1413 FOG: HEAT repeat [Ener 96.7 0.059 1.3E-06 66.0 18.9 184 569-802 51-241 (335)
117 KOG1967 DNA repair/transcripti 96.7 0.025 5.5E-07 71.9 15.2 153 64-217 862-1018(1030)
118 PF05004 IFRD: Interferon-rela 96.7 0.2 4.4E-06 59.6 22.3 202 149-353 40-260 (309)
119 KOG1061 Vesicle coat complex A 96.7 0.12 2.6E-06 65.4 20.9 130 479-633 100-233 (734)
120 PRK15174 Vi polysaccharide exp 96.6 3.3 7.1E-05 55.6 36.2 333 1287-1712 44-386 (656)
121 PF13251 DUF4042: Domain of un 96.6 0.028 6.1E-07 60.3 13.3 143 169-311 2-175 (182)
122 KOG1078 Vesicle coat complex C 96.6 3.6 7.9E-05 52.5 33.3 144 288-440 289-435 (865)
123 PF13646 HEAT_2: HEAT repeats; 96.5 0.011 2.4E-07 56.1 8.3 88 685-799 1-88 (88)
124 PLN03218 maturation of RBCL 1; 96.4 8 0.00017 54.2 38.4 65 1567-1644 717-782 (1060)
125 PF11865 DUF3385: Domain of un 96.4 0.023 5E-07 60.3 11.0 152 592-760 3-158 (160)
126 KOG1058 Vesicle coat complex C 96.4 1.7 3.8E-05 54.8 27.6 142 501-673 317-465 (948)
127 KOG2022 Nuclear transport rece 96.4 5.6 0.00012 51.6 46.1 159 250-410 477-639 (982)
128 PLN03077 Protein ECB2; Provisi 96.3 7.4 0.00016 54.5 38.3 462 1286-1832 289-766 (857)
129 PLN03081 pentatricopeptide (PP 96.3 2.7 5.9E-05 57.2 33.3 477 1270-1832 106-603 (697)
130 PF12717 Cnd1: non-SMC mitotic 96.3 0.055 1.2E-06 59.0 13.6 109 515-651 1-112 (178)
131 PF03378 CAS_CSE1: CAS/CSE pro 96.3 0.58 1.3E-05 58.3 24.1 229 720-998 17-253 (435)
132 KOG1820 Microtubule-associated 96.2 0.13 2.8E-06 67.7 18.2 194 109-314 252-447 (815)
133 PF12717 Cnd1: non-SMC mitotic 96.2 0.29 6.2E-06 53.5 18.4 113 124-251 1-113 (178)
134 KOG2062 26S proteasome regulat 96.1 0.14 3E-06 63.9 16.6 158 194-376 519-679 (929)
135 KOG0168 Putative ubiquitin fus 96.1 0.84 1.8E-05 58.2 23.1 208 153-372 168-390 (1051)
136 KOG2025 Chromosome condensatio 96.0 4.5 9.7E-05 51.0 28.6 183 22-219 3-189 (892)
137 PF02985 HEAT: HEAT repeat; I 96.0 0.0094 2E-07 43.5 3.9 29 195-223 1-29 (31)
138 KOG2081 Nuclear transport regu 96.0 6.1 0.00013 49.0 30.4 206 187-407 333-553 (559)
139 COG1413 FOG: HEAT repeat [Ener 96.0 0.51 1.1E-05 57.8 21.6 213 505-799 46-269 (335)
140 KOG2062 26S proteasome regulat 95.9 1.2 2.7E-05 55.9 23.2 153 507-695 524-677 (929)
141 PF04826 Arm_2: Armadillo-like 95.9 0.58 1.3E-05 53.7 19.4 189 562-763 14-209 (254)
142 KOG2032 Uncharacterized conser 95.8 2 4.3E-05 52.0 23.7 146 79-225 227-373 (533)
143 cd00020 ARM Armadillo/beta-cat 95.8 0.022 4.9E-07 57.6 7.2 112 599-716 7-119 (120)
144 PRK10049 pgaA outer membrane p 95.8 13 0.00029 51.0 39.1 409 1324-1796 14-457 (765)
145 KOG0414 Chromosome condensatio 95.8 0.15 3.4E-06 67.0 15.7 188 105-335 914-1104(1251)
146 cd00020 ARM Armadillo/beta-cat 95.7 0.028 6.1E-07 56.9 7.6 100 654-759 19-120 (120)
147 PF05918 API5: Apoptosis inhib 95.7 0.36 7.7E-06 60.7 17.9 262 479-782 36-315 (556)
148 PF11864 DUF3384: Domain of un 95.6 10 0.00022 48.5 35.2 256 612-927 42-329 (464)
149 KOG2021 Nuclear mRNA export fa 95.6 10 0.00022 48.3 56.8 161 613-782 413-585 (980)
150 KOG1078 Vesicle coat complex C 95.6 11 0.00024 48.4 36.5 346 43-438 40-395 (865)
151 PF04826 Arm_2: Armadillo-like 95.5 1 2.2E-05 51.8 19.7 216 74-301 17-253 (254)
152 PRK10747 putative protoheme IX 95.5 5.7 0.00012 49.8 28.2 64 1566-1643 325-388 (398)
153 COG5096 Vesicle coat complex, 95.5 13 0.00029 48.7 40.1 173 166-367 33-209 (757)
154 PRK15174 Vi polysaccharide exp 95.4 6.1 0.00013 53.0 29.8 294 1290-1645 81-381 (656)
155 PF12719 Cnd3: Nuclear condens 95.3 1.1 2.4E-05 53.5 20.3 132 558-694 24-163 (298)
156 KOG0547 Translocase of outer m 95.3 9.8 0.00021 46.2 26.8 320 1363-1757 124-493 (606)
157 PF05918 API5: Apoptosis inhib 95.3 4.8 0.0001 51.0 25.8 128 68-205 58-189 (556)
158 PRK11788 tetratricopeptide rep 95.2 8.1 0.00018 48.4 29.0 213 1569-1841 107-319 (389)
159 PF10274 ParcG: Parkin co-regu 95.1 0.21 4.5E-06 53.2 11.2 89 642-737 40-132 (183)
160 KOG4524 Uncharacterized conser 95.0 1.8 3.8E-05 56.5 21.2 76 1041-1116 815-900 (1014)
161 PF10274 ParcG: Parkin co-regu 95.0 0.049 1.1E-06 57.8 6.4 87 322-408 37-129 (183)
162 cd00256 VATPase_H VATPase_H, r 95.0 3.8 8.1E-05 50.6 23.3 292 202-533 109-427 (429)
163 PF08167 RIX1: rRNA processing 94.9 0.51 1.1E-05 50.6 14.2 132 599-738 25-164 (165)
164 KOG0414 Chromosome condensatio 94.8 23 0.00049 48.0 62.3 134 174-313 296-431 (1251)
165 cd00256 VATPase_H VATPase_H, r 94.8 7.1 0.00015 48.2 25.0 330 701-1098 67-426 (429)
166 PF13251 DUF4042: Domain of un 94.7 0.88 1.9E-05 49.0 14.9 164 615-806 2-177 (182)
167 PF02985 HEAT: HEAT repeat; I 94.6 0.047 1E-06 39.9 3.7 30 600-629 1-30 (31)
168 TIGR00540 hemY_coli hemY prote 94.4 16 0.00034 46.1 28.1 61 1570-1644 336-398 (409)
169 smart00802 UME Domain in UVSB 94.3 0.23 5E-06 48.3 8.7 91 315-407 3-100 (107)
170 PLN03218 maturation of RBCL 1; 94.3 13 0.00028 52.2 28.8 158 1288-1454 475-641 (1060)
171 PF08064 UME: UME (NUC010) dom 94.3 0.23 5.1E-06 48.7 8.8 92 316-409 4-102 (107)
172 PF08167 RIX1: rRNA processing 93.9 1.1 2.3E-05 48.2 13.9 135 66-203 22-164 (165)
173 PF12719 Cnd3: Nuclear condens 93.9 7.4 0.00016 46.5 22.6 127 664-801 5-141 (298)
174 PRK10370 formate-dependent nit 93.9 1.3 2.7E-05 49.4 14.9 137 1536-1711 36-177 (198)
175 PF08569 Mo25: Mo25-like; Int 93.7 6.4 0.00014 47.2 21.1 195 112-311 78-284 (335)
176 KOG0946 ER-Golgi vesicle-tethe 93.7 17 0.00037 46.8 24.8 203 598-800 165-396 (970)
177 COG5096 Vesicle coat complex, 93.6 33 0.00072 45.3 36.8 128 248-392 28-157 (757)
178 KOG2160 Armadillo/beta-catenin 93.5 1.6 3.5E-05 51.1 15.2 156 601-760 126-283 (342)
179 PF08713 DNA_alkylation: DNA a 93.1 2.7 5.9E-05 47.5 16.4 150 45-222 33-183 (213)
180 PF14500 MMS19_N: Dos2-interac 93.1 10 0.00022 44.1 20.9 234 164-408 10-255 (262)
181 KOG2933 Uncharacterized conser 92.9 0.57 1.2E-05 53.2 10.0 148 600-761 89-236 (334)
182 COG5116 RPN2 26S proteasome re 92.8 2.1 4.5E-05 52.1 14.7 155 505-695 519-674 (926)
183 PLN03076 ARF guanine nucleotid 92.6 46 0.001 48.9 30.3 359 616-996 1109-1511(1780)
184 KOG2933 Uncharacterized conser 92.6 1.6 3.4E-05 49.8 12.8 140 243-394 92-237 (334)
185 PF05536 Neurochondrin: Neuroc 92.6 42 0.00091 43.6 32.0 187 660-892 75-266 (543)
186 smart00802 UME Domain in UVSB 92.6 0.49 1.1E-05 46.1 7.8 89 860-950 14-106 (107)
187 PF08064 UME: UME (NUC010) dom 92.5 0.52 1.1E-05 46.2 8.1 87 862-950 16-106 (107)
188 PF12530 DUF3730: Protein of u 92.4 11 0.00023 43.3 19.9 196 569-782 9-208 (234)
189 PF08767 CRM1_C: CRM1 C termin 92.2 33 0.00071 41.4 27.1 169 169-337 43-228 (319)
190 PF04733 Coatomer_E: Coatomer 92.2 2.4 5.2E-05 50.2 14.7 174 1245-1454 81-263 (290)
191 PF12231 Rif1_N: Rap1-interact 92.2 37 0.00081 41.9 29.1 256 107-395 36-307 (372)
192 KOG0567 HEAT repeat-containing 92.0 4.2 9.2E-05 45.4 14.7 187 570-801 78-278 (289)
193 PF13429 TPR_15: Tetratricopep 91.8 0.76 1.6E-05 54.6 10.2 254 1330-1644 13-276 (280)
194 KOG2076 RNA polymerase III tra 91.8 56 0.0012 43.2 28.3 103 1298-1410 152-260 (895)
195 TIGR02521 type_IV_pilW type IV 91.6 18 0.00039 40.8 21.3 166 1568-1794 30-197 (234)
196 PF08767 CRM1_C: CRM1 C termin 91.4 39 0.00085 40.7 25.4 131 121-251 86-226 (319)
197 PLN03077 Protein ECB2; Provisi 91.4 81 0.0018 44.2 47.5 127 1326-1456 223-352 (857)
198 KOG2076 RNA polymerase III tra 91.3 8.7 0.00019 50.2 18.7 183 1615-1849 141-331 (895)
199 COG5116 RPN2 26S proteasome re 91.2 2.8 6E-05 51.0 13.4 167 556-756 515-684 (926)
200 PF08569 Mo25: Mo25-like; Int 91.1 4.5 9.8E-05 48.5 15.5 197 598-803 75-283 (335)
201 KOG4413 26S proteasome regulat 91.1 33 0.00073 39.3 21.4 281 495-802 75-376 (524)
202 KOG4626 O-linked N-acetylgluco 91.1 3.2 6.9E-05 51.3 13.8 181 1528-1757 116-317 (966)
203 KOG2160 Armadillo/beta-catenin 91.0 28 0.00062 41.2 21.0 183 79-269 93-282 (342)
204 PF04118 Dopey_N: Dopey, N-ter 91.0 4.8 0.0001 47.5 15.2 119 856-980 53-172 (307)
205 PLN03076 ARF guanine nucleotid 90.9 76 0.0016 46.8 29.4 167 50-222 1074-1252(1780)
206 COG5095 TAF6 Transcription ini 90.9 5 0.00011 45.0 14.0 165 566-739 203-382 (450)
207 PRK15359 type III secretion sy 90.7 2.6 5.6E-05 44.2 11.7 99 1613-1756 24-122 (144)
208 KOG1525 Sister chromatid cohes 90.5 99 0.0021 43.8 29.4 99 507-628 305-405 (1266)
209 KOG4413 26S proteasome regulat 90.5 38 0.00082 38.9 29.4 200 166-377 53-270 (524)
210 PF14500 MMS19_N: Dos2-interac 90.2 42 0.00092 39.0 23.8 239 75-329 5-256 (262)
211 COG5656 SXM1 Importin, protein 90.1 69 0.0015 41.4 48.2 133 150-289 406-550 (970)
212 TIGR03302 OM_YfiO outer membra 90.1 13 0.00027 42.8 17.9 112 1611-1756 31-145 (235)
213 COG5098 Chromosome condensatio 90.1 7.6 0.00016 48.7 15.8 140 478-634 278-421 (1128)
214 COG5656 SXM1 Importin, protein 90.0 70 0.0015 41.3 61.1 125 600-736 461-587 (970)
215 PRK15359 type III secretion sy 89.9 6.8 0.00015 41.1 13.9 111 1572-1723 27-137 (144)
216 PF01603 B56: Protein phosphat 89.7 18 0.00039 45.2 19.8 238 69-317 133-377 (409)
217 KOG1949 Uncharacterized conser 89.6 7.5 0.00016 48.9 15.5 180 602-792 177-360 (1005)
218 PF05536 Neurochondrin: Neuroc 89.5 80 0.0017 41.1 30.5 244 21-272 2-264 (543)
219 PF12895 Apc3: Anaphase-promot 89.4 1.2 2.6E-05 41.6 7.1 81 1367-1451 2-82 (84)
220 smart00638 LPD_N Lipoprotein N 89.3 5 0.00011 53.1 15.6 137 68-219 392-541 (574)
221 cd08050 TAF6 TATA Binding Prot 89.3 5.1 0.00011 48.6 14.1 141 570-715 187-338 (343)
222 TIGR02521 type_IV_pilW type IV 89.3 25 0.00055 39.6 19.8 160 1568-1786 64-223 (234)
223 PF04118 Dopey_N: Dopey, N-ter 89.0 24 0.00051 41.9 18.7 230 63-306 5-250 (307)
224 KOG4524 Uncharacterized conser 88.8 1E+02 0.0022 41.4 26.1 112 283-394 591-706 (1014)
225 KOG1155 Anaphase-promoting com 88.6 2.8 6.1E-05 50.3 10.6 167 1672-1867 364-553 (559)
226 COG5095 TAF6 Transcription ini 88.5 20 0.00043 40.5 16.3 147 191-349 194-358 (450)
227 KOG2025 Chromosome condensatio 88.2 10 0.00022 48.1 15.3 108 680-799 82-189 (892)
228 KOG1126 DNA-binding cell divis 88.0 56 0.0012 41.7 21.6 74 1368-1446 333-406 (638)
229 KOG1517 Guanine nucleotide bin 87.9 8.1 0.00018 50.9 14.7 156 71-226 514-674 (1387)
230 KOG2137 Protein kinase [Signal 87.6 38 0.00081 43.8 20.0 160 965-1131 369-534 (700)
231 PF12765 Cohesin_HEAT: HEAT re 87.6 0.82 1.8E-05 36.1 3.8 40 176-217 2-41 (42)
232 PF01603 B56: Protein phosphat 87.5 11 0.00023 47.2 15.8 204 598-809 132-376 (409)
233 PRK12370 invasion protein regu 87.4 1.1E+02 0.0024 40.3 26.4 193 1584-1839 276-476 (553)
234 PF11919 DUF3437: Domain of un 87.3 0.97 2.1E-05 42.4 4.8 56 167-223 3-58 (90)
235 PF08623 TIP120: TATA-binding 87.1 5.7 0.00012 42.2 10.9 94 187-288 2-113 (169)
236 KOG2549 Transcription initiati 86.9 14 0.0003 45.9 15.2 139 654-803 219-370 (576)
237 KOG2002 TPR-containing nuclear 86.8 1.3E+02 0.0028 40.4 43.7 67 1744-1814 698-769 (1018)
238 COG5101 CRM1 Importin beta-rel 86.8 34 0.00073 42.8 18.2 77 278-354 567-652 (1053)
239 PF10521 DUF2454: Protein of u 86.6 9 0.0002 45.3 13.7 142 599-741 119-277 (282)
240 PF08506 Cse1: Cse1; InterPro 86.6 21 0.00045 43.8 17.1 132 114-252 214-359 (370)
241 PF13429 TPR_15: Tetratricopep 86.5 13 0.00027 44.2 15.2 117 1566-1723 143-259 (280)
242 COG5218 YCG1 Chromosome conden 86.4 38 0.00081 42.2 18.2 107 680-798 88-194 (885)
243 PRK15179 Vi polysaccharide bio 85.7 11 0.00023 50.3 15.0 157 1245-1415 47-212 (694)
244 PRK10049 pgaA outer membrane p 85.5 1.7E+02 0.0036 40.4 38.3 358 1289-1722 53-437 (765)
245 PF08506 Cse1: Cse1; InterPro 85.4 32 0.00068 42.3 17.8 201 170-374 113-358 (370)
246 PF12688 TPR_5: Tetratrico pep 85.4 4.9 0.00011 40.4 9.0 85 1363-1447 10-95 (120)
247 KOG1173 Anaphase-promoting com 85.2 1.2E+02 0.0025 38.3 22.5 120 1563-1723 238-357 (611)
248 KOG1851 Uncharacterized conser 84.9 29 0.00063 48.4 18.1 140 161-309 1535-1677(1710)
249 smart00638 LPD_N Lipoprotein N 84.8 22 0.00049 47.0 17.8 174 154-345 359-540 (574)
250 PF09295 ChAPs: ChAPs (Chs5p-A 84.7 11 0.00024 46.4 13.4 109 1569-1724 172-280 (395)
251 KOG1949 Uncharacterized conser 84.7 24 0.00052 44.7 15.9 106 507-630 225-333 (1005)
252 PF12530 DUF3730: Protein of u 84.5 82 0.0018 36.1 19.8 177 606-799 8-185 (234)
253 KOG0803 Predicted E3 ubiquitin 84.5 1E+02 0.0022 43.8 23.4 194 22-228 39-268 (1312)
254 KOG1125 TPR repeat-containing 84.2 32 0.00069 43.1 16.6 189 1551-1757 301-529 (579)
255 PF12231 Rif1_N: Rap1-interact 84.2 1.2E+02 0.0025 37.6 29.6 183 124-310 105-303 (372)
256 PF10521 DUF2454: Protein of u 84.0 20 0.00043 42.4 14.9 147 145-292 112-276 (282)
257 PF01347 Vitellogenin_N: Lipop 83.9 76 0.0017 42.5 22.5 167 514-711 447-616 (618)
258 PF11707 Npa1: Ribosome 60S bi 83.9 82 0.0018 38.3 20.5 81 600-685 205-313 (330)
259 PRK10747 putative protoheme IX 83.9 1.3E+02 0.0028 37.8 29.5 130 1567-1755 261-390 (398)
260 KOG0495 HAT repeat protein [RN 83.8 1.4E+02 0.003 38.2 22.4 52 1548-1601 565-616 (913)
261 KOG1155 Anaphase-promoting com 83.5 11 0.00023 45.6 11.9 86 1291-1382 404-494 (559)
262 PLN03088 SGT1, suppressor of 83.4 17 0.00036 44.8 14.5 114 1571-1725 4-117 (356)
263 cd08050 TAF6 TATA Binding Prot 83.4 30 0.00065 42.1 16.4 152 602-757 181-338 (343)
264 PF01347 Vitellogenin_N: Lipop 83.3 15 0.00033 49.3 15.4 171 154-345 397-584 (618)
265 PF10363 DUF2435: Protein of u 83.2 11 0.00024 35.8 9.9 85 642-741 5-89 (92)
266 KOG0567 HEAT repeat-containing 83.2 75 0.0016 36.1 17.4 98 598-720 186-283 (289)
267 PF13414 TPR_11: TPR repeat; P 82.9 5.5 0.00012 35.4 7.6 66 1567-1644 1-66 (69)
268 PF13414 TPR_11: TPR repeat; P 82.6 7.1 0.00015 34.6 8.2 51 1693-1756 18-68 (69)
269 PRK09782 bacteriophage N4 rece 82.6 86 0.0019 44.0 22.1 164 1570-1795 543-706 (987)
270 PF13001 Ecm29: Proteasome sta 82.2 18 0.0004 46.6 14.7 141 573-721 295-447 (501)
271 TIGR02552 LcrH_SycD type III s 81.9 29 0.00062 35.6 13.8 108 1567-1715 15-122 (135)
272 PF13428 TPR_14: Tetratricopep 81.9 3.7 8.1E-05 32.8 5.4 41 1674-1720 3-43 (44)
273 PF14559 TPR_19: Tetratricopep 81.8 3.1 6.6E-05 36.8 5.5 49 1366-1417 3-51 (68)
274 COG5218 YCG1 Chromosome conden 81.4 1.6E+02 0.0034 37.1 45.3 109 557-670 526-638 (885)
275 PRK14574 hmsH outer membrane p 81.2 2.3E+02 0.005 38.9 35.8 124 1569-1723 367-495 (822)
276 COG5098 Chromosome condensatio 80.9 4.5 9.7E-05 50.6 7.8 129 986-1116 891-1019(1128)
277 cd03561 VHS VHS domain family; 80.8 17 0.00037 37.4 11.2 100 571-675 14-116 (133)
278 PF12895 Apc3: Anaphase-promot 80.4 2.9 6.4E-05 39.0 5.1 77 1299-1379 3-83 (84)
279 PRK09782 bacteriophage N4 rece 80.3 2.7E+02 0.0059 39.2 45.3 141 1299-1455 122-275 (987)
280 PF03224 V-ATPase_H_N: V-ATPas 80.3 1.4E+02 0.0031 35.9 21.1 71 111-183 107-180 (312)
281 PF11864 DUF3384: Domain of un 79.7 1.9E+02 0.0041 37.0 24.2 167 45-225 152-329 (464)
282 KOG1915 Cell cycle control pro 79.4 1.6E+02 0.0035 36.1 20.0 255 1493-1812 128-418 (677)
283 PF12397 U3snoRNP10: U3 small 79.0 17 0.00037 36.7 10.4 103 1023-1132 1-104 (121)
284 PRK11189 lipoprotein NlpI; Pro 78.2 1.6E+02 0.0034 35.2 23.1 164 1584-1807 41-206 (296)
285 KOG2137 Protein kinase [Signal 78.2 1.7E+02 0.0037 38.1 20.5 224 89-333 272-518 (700)
286 PF05843 Suf: Suppressor of fo 78.1 23 0.00049 41.9 12.7 113 1571-1723 3-118 (280)
287 KOG3678 SARM protein (with ste 78.0 80 0.0017 38.1 16.3 58 123-183 276-337 (832)
288 KOG0553 TPR repeat-containing 77.9 25 0.00054 40.6 12.0 99 1579-1718 91-189 (304)
289 PRK12370 invasion protein regu 77.6 2.4E+02 0.0053 37.1 27.5 204 1581-1849 316-522 (553)
290 PF13001 Ecm29: Proteasome sta 77.4 28 0.00061 44.9 14.2 198 595-801 268-486 (501)
291 TIGR02795 tol_pal_ybgF tol-pal 77.0 38 0.00083 33.5 12.6 110 1569-1713 2-111 (119)
292 cd06561 AlkD_like A new struct 76.7 78 0.0017 35.1 16.1 119 85-224 52-171 (197)
293 KOG1851 Uncharacterized conser 76.5 3.6E+02 0.0079 38.5 35.5 155 557-720 1523-1681(1710)
294 COG5032 TEL1 Phosphatidylinosi 76.4 2.1E+02 0.0047 43.8 24.4 78 1327-1406 1125-1207(2105)
295 KOG1156 N-terminal acetyltrans 76.4 1.1E+02 0.0024 39.1 17.7 251 1548-1874 128-407 (700)
296 PF14664 RICTOR_N: Rapamycin-i 76.3 70 0.0015 39.3 16.4 229 71-310 27-269 (371)
297 KOG2549 Transcription initiati 76.1 1.4E+02 0.003 37.7 18.1 167 193-372 206-393 (576)
298 cd03569 VHS_Hrs_Vps27p VHS dom 75.6 46 0.001 34.6 12.5 110 559-674 6-117 (142)
299 KOG2149 Uncharacterized conser 75.3 37 0.0008 40.9 12.9 132 601-739 60-192 (393)
300 cd00189 TPR Tetratricopeptide 75.2 28 0.0006 32.0 10.5 61 1571-1644 2-62 (100)
301 KOG1822 Uncharacterized conser 75.2 4.3E+02 0.0093 38.7 52.4 99 700-801 888-986 (2067)
302 PRK15179 Vi polysaccharide bio 75.1 71 0.0015 42.8 17.2 116 1567-1723 84-199 (694)
303 TIGR02552 LcrH_SycD type III s 74.8 19 0.00042 36.9 9.9 89 1290-1384 22-115 (135)
304 PF14938 SNAP: Soluble NSF att 74.0 1E+02 0.0022 36.5 16.9 192 1569-1797 35-227 (282)
305 KOG1126 DNA-binding cell divis 73.7 18 0.0004 45.8 10.4 198 1572-1796 356-587 (638)
306 KOG4500 Rho/Rac GTPase guanine 73.6 2.2E+02 0.0048 34.6 29.0 198 889-1098 302-520 (604)
307 PF12074 DUF3554: Domain of un 73.5 2.2E+02 0.0049 34.7 20.6 69 152-223 22-90 (339)
308 PF14664 RICTOR_N: Rapamycin-i 73.3 1.8E+02 0.004 35.8 18.9 232 559-806 24-272 (371)
309 KOG0413 Uncharacterized conser 73.1 2.4E+02 0.0052 37.8 19.7 129 126-270 946-1074(1529)
310 PF13176 TPR_7: Tetratricopept 72.6 4.1 8.9E-05 30.9 3.0 21 1361-1381 6-26 (36)
311 PF12569 NARP1: NMDA receptor- 72.6 38 0.00083 43.5 13.3 203 1616-1873 7-229 (517)
312 PRK11189 lipoprotein NlpI; Pro 72.5 1.6E+02 0.0035 35.1 18.3 124 1632-1799 42-165 (296)
313 smart00288 VHS Domain present 72.1 38 0.00082 34.9 10.9 100 570-674 13-114 (133)
314 TIGR02795 tol_pal_ybgF tol-pal 71.6 19 0.00042 35.7 8.7 92 1362-1453 10-102 (119)
315 cd03568 VHS_STAM VHS domain fa 71.5 46 0.001 34.7 11.3 98 571-674 14-113 (144)
316 KOG0889 Histone acetyltransfer 70.7 7.1E+02 0.015 39.3 45.8 55 1042-1096 1246-1305(3550)
317 PF10363 DUF2435: Protein of u 70.5 37 0.0008 32.3 9.4 74 240-315 4-77 (92)
318 PF10602 RPN7: 26S proteasome 69.7 46 0.00099 36.2 11.4 87 1362-1448 44-134 (177)
319 PF08389 Xpo1: Exportin 1-like 69.7 23 0.00049 37.1 9.1 67 1024-1092 78-148 (148)
320 PF13432 TPR_16: Tetratricopep 69.5 11 0.00023 33.0 5.5 50 1363-1415 6-55 (65)
321 KOG1129 TPR repeat-containing 69.3 34 0.00073 39.5 10.2 90 1290-1386 228-322 (478)
322 KOG1525 Sister chromatid cohes 69.2 5.2E+02 0.011 37.1 42.2 247 122-385 61-323 (1266)
323 KOG2021 Nuclear mRNA export fa 69.2 3.7E+02 0.0079 35.3 49.6 55 896-950 530-586 (980)
324 KOG2149 Uncharacterized conser 68.6 29 0.00062 41.7 10.1 115 642-764 60-175 (393)
325 PLN03088 SGT1, suppressor of 68.4 31 0.00067 42.4 11.1 107 1290-1405 7-118 (356)
326 KOG0495 HAT repeat protein [RN 68.2 1.2E+02 0.0025 38.9 15.2 134 1547-1724 598-731 (913)
327 PF13431 TPR_17: Tetratricopep 68.1 6.5 0.00014 29.4 3.1 25 1700-1724 1-25 (34)
328 PRK02603 photosystem I assembl 68.0 92 0.002 33.6 13.6 116 1613-1756 35-150 (172)
329 KOG1243 Protein kinase [Genera 67.9 17 0.00037 46.5 8.5 168 47-226 350-518 (690)
330 PRK14720 transcript cleavage f 67.8 2.5E+02 0.0054 38.6 19.6 146 1567-1750 29-180 (906)
331 KOG0803 Predicted E3 ubiquitin 67.8 1.9E+02 0.0042 41.1 19.0 219 111-333 43-286 (1312)
332 PF14222 MOR2-PAG1_N: Cell mor 67.6 1.5E+02 0.0032 38.7 17.1 200 18-222 29-248 (552)
333 PF00790 VHS: VHS domain; Int 67.2 57 0.0012 33.9 11.1 111 558-673 6-120 (140)
334 KOG3723 PH domain protein Melt 67.0 3E+02 0.0065 34.5 17.9 87 965-1059 181-267 (851)
335 cd07064 AlkD_like_1 A new stru 66.9 1.9E+02 0.0041 32.5 15.9 131 71-223 48-179 (208)
336 PRK10370 formate-dependent nit 66.7 1.7E+02 0.0036 32.6 15.5 129 1691-1857 52-184 (198)
337 PF12054 DUF3535: Domain of un 66.6 3.5E+02 0.0077 34.2 24.7 78 126-207 102-181 (441)
338 KOG3961 Uncharacterized conser 66.3 23 0.00051 38.3 7.8 73 659-736 131-206 (262)
339 KOG3961 Uncharacterized conser 66.3 9.5 0.00021 41.1 5.0 72 337-408 130-204 (262)
340 KOG1293 Proteins containing ar 66.1 3.9E+02 0.0085 34.6 22.5 163 115-287 381-554 (678)
341 KOG1517 Guanine nucleotide bin 66.0 54 0.0012 43.9 12.3 157 600-761 513-673 (1387)
342 cd05804 StaR_like StaR_like; a 65.3 3.2E+02 0.007 33.3 20.3 155 1290-1453 119-290 (355)
343 cd03567 VHS_GGA VHS domain fam 64.4 1E+02 0.0022 31.9 12.0 100 570-674 14-119 (139)
344 KOG2842 Interferon-related pro 64.3 3.2E+02 0.007 32.9 20.4 211 12-227 45-277 (427)
345 PF09976 TPR_21: Tetratricopep 63.8 1.3E+02 0.0028 31.4 13.3 82 1364-1448 58-139 (145)
346 PF04733 Coatomer_E: Coatomer 63.8 1.9E+02 0.0042 34.3 16.0 113 1567-1718 129-241 (290)
347 PF13432 TPR_16: Tetratricopep 63.8 30 0.00065 30.1 7.2 59 1574-1645 2-60 (65)
348 KOG1243 Protein kinase [Genera 63.3 59 0.0013 41.9 11.9 107 984-1095 327-435 (690)
349 PRK15363 pathogenicity island 62.7 1.4E+02 0.003 31.6 12.5 99 1613-1756 35-133 (157)
350 KOG1988 Uncharacterized conser 62.2 3.2E+02 0.007 36.4 17.9 214 558-801 61-279 (970)
351 PF11698 V-ATPase_H_C: V-ATPas 61.5 15 0.00032 36.5 5.1 72 728-801 42-113 (119)
352 KOG4500 Rho/Rac GTPase guanine 61.4 2.8E+02 0.0061 33.8 15.9 150 646-800 320-472 (604)
353 PF03224 V-ATPase_H_N: V-ATPas 61.2 3.6E+02 0.0078 32.4 18.5 110 110-223 59-179 (312)
354 KOG2041 WD40 repeat protein [G 59.7 28 0.00061 43.9 8.0 78 1329-1417 764-848 (1189)
355 PF12333 Ipi1_N: Rix1 complex 59.6 36 0.00078 33.2 7.4 63 273-335 3-65 (102)
356 PF00514 Arm: Armadillo/beta-c 59.5 15 0.00032 28.8 3.9 29 194-222 12-40 (41)
357 COG3071 HemY Uncharacterized e 58.4 4.1E+02 0.009 32.3 22.3 67 1533-1601 289-360 (400)
358 PF14938 SNAP: Soluble NSF att 58.3 2.4E+02 0.0053 33.3 15.9 117 1326-1452 95-221 (282)
359 PF14631 FancD2: Fanconi anaem 58.0 89 0.0019 45.4 13.8 152 185-347 426-578 (1426)
360 PF12333 Ipi1_N: Rix1 complex 57.7 26 0.00057 34.1 6.1 63 631-695 2-65 (102)
361 PRK15363 pathogenicity island 57.4 74 0.0016 33.5 9.5 82 1692-1793 49-130 (157)
362 PF12765 Cohesin_HEAT: HEAT re 57.3 12 0.00026 29.6 3.0 28 596-623 15-42 (42)
363 PF13424 TPR_12: Tetratricopep 56.8 23 0.00049 32.3 5.4 54 1362-1415 13-70 (78)
364 PF14559 TPR_19: Tetratricopep 56.6 16 0.00035 32.1 4.2 52 1580-1644 2-53 (68)
365 TIGR00540 hemY_coli hemY prote 56.5 5E+02 0.011 32.6 29.6 120 1567-1724 261-382 (409)
366 KOG3678 SARM protein (with ste 56.4 3.6E+02 0.0078 32.9 15.8 147 73-223 184-336 (832)
367 KOG2396 HAT (Half-A-TPR) repea 55.4 1.1E+02 0.0025 37.9 11.8 79 1540-1628 75-154 (568)
368 COG4783 Putative Zn-dependent 55.3 1.9E+02 0.0041 36.0 13.7 68 1567-1647 338-405 (484)
369 PF09976 TPR_21: Tetratricopep 55.2 1.1E+02 0.0024 32.0 10.9 63 1569-1641 48-110 (145)
370 PF07571 DUF1546: Protein of u 54.9 48 0.001 31.5 7.2 60 654-716 18-77 (92)
371 PF10350 DUF2428: Putative dea 54.6 3.8E+02 0.0081 31.2 16.1 164 126-291 62-250 (255)
372 PF08161 NUC173: NUC173 domain 54.5 1.5E+02 0.0032 33.0 11.9 59 875-933 17-75 (198)
373 PF13371 TPR_9: Tetratricopept 54.3 32 0.00069 30.7 5.9 52 1363-1417 4-55 (73)
374 PF08623 TIP120: TATA-binding 54.0 42 0.00092 35.8 7.3 103 610-717 38-147 (169)
375 PF12830 Nipped-B_C: Sister ch 53.9 63 0.0014 35.5 9.1 75 561-638 9-84 (187)
376 cd03572 ENTH_epsin_related ENT 53.9 56 0.0012 32.8 7.7 64 263-328 21-84 (122)
377 TIGR03302 OM_YfiO outer membra 53.4 3.8E+02 0.0083 30.4 21.0 122 1568-1718 32-155 (235)
378 KOG1293 Proteins containing ar 53.2 6.4E+02 0.014 32.8 35.1 112 560-673 419-535 (678)
379 PRK10803 tol-pal system protei 53.1 2.1E+02 0.0046 33.4 13.7 109 1569-1712 142-251 (263)
380 KOG2759 Vacuolar H+-ATPase V1 53.0 5.2E+02 0.011 31.7 26.2 53 479-531 381-438 (442)
381 CHL00033 ycf3 photosystem I as 52.9 1.5E+02 0.0033 31.7 11.9 113 1569-1712 35-154 (168)
382 PF06552 TOM20_plant: Plant sp 52.6 51 0.0011 35.3 7.5 73 1694-1773 51-123 (186)
383 PF13371 TPR_9: Tetratricopept 52.4 42 0.00091 29.9 6.4 57 1576-1645 2-58 (73)
384 cd03565 VHS_Tom1 VHS domain fa 51.6 1.9E+02 0.0041 30.1 11.6 100 570-674 14-118 (141)
385 PF13174 TPR_6: Tetratricopept 51.5 17 0.00038 26.3 3.0 26 1361-1386 7-32 (33)
386 PF07719 TPR_2: Tetratricopept 51.5 31 0.00068 25.2 4.4 34 1672-1711 1-34 (34)
387 PF09295 ChAPs: ChAPs (Chs5p-A 50.9 1.2E+02 0.0026 37.5 11.7 110 1295-1416 179-293 (395)
388 cd00189 TPR Tetratricopeptide 50.6 97 0.0021 28.1 9.1 82 1364-1450 10-91 (100)
389 PF07719 TPR_2: Tetratricopept 50.3 22 0.00048 26.0 3.4 25 1361-1385 8-32 (34)
390 PF14668 RICTOR_V: Rapamycin-i 50.1 21 0.00045 32.2 3.7 55 746-802 3-57 (73)
391 PF00515 TPR_1: Tetratricopept 50.0 22 0.00047 26.3 3.3 24 1361-1384 8-31 (34)
392 PF00515 TPR_1: Tetratricopept 49.8 32 0.0007 25.3 4.3 33 1672-1710 1-33 (34)
393 KOG1070 rRNA processing protei 49.6 8.1E+02 0.018 35.0 19.2 191 1564-1811 1454-1647(1710)
394 KOG3060 Uncharacterized conser 49.6 3.7E+02 0.008 30.7 13.6 132 1582-1729 99-242 (289)
395 PF08389 Xpo1: Exportin 1-like 49.3 2.5E+02 0.0053 29.1 12.7 69 275-345 76-148 (148)
396 KOG4199 Uncharacterized conser 49.3 5.2E+02 0.011 30.6 21.3 187 684-919 242-435 (461)
397 PF12783 Sec7_N: Guanine nucle 48.4 67 0.0014 34.6 8.2 99 657-760 37-147 (168)
398 PF08631 SPO22: Meiosis protei 48.2 5.2E+02 0.011 30.4 19.1 118 1578-1710 2-119 (278)
399 PRK14720 transcript cleavage f 48.1 9.4E+02 0.02 33.3 24.8 69 1533-1601 187-255 (906)
400 PF00514 Arm: Armadillo/beta-c 47.3 31 0.00068 26.9 4.0 29 599-627 12-40 (41)
401 PRK02603 photosystem I assembl 47.3 3.1E+02 0.0067 29.5 13.3 139 1548-1712 14-154 (172)
402 KOG2213 Apoptosis inhibitor 5/ 47.1 6.1E+02 0.013 30.8 20.6 49 481-530 40-89 (460)
403 PF12074 DUF3554: Domain of un 46.6 4.2E+02 0.0091 32.3 15.8 183 19-207 56-257 (339)
404 KOG1173 Anaphase-promoting com 46.6 2.4E+02 0.0053 35.7 12.9 127 1582-1756 393-519 (611)
405 KOG2005 26S proteasome regulat 46.5 4.4E+02 0.0094 34.1 15.0 63 731-803 642-704 (878)
406 KOG1127 TPR repeat-containing 46.3 6.7E+02 0.014 34.4 17.2 33 1692-1724 51-83 (1238)
407 COG4235 Cytochrome c biogenesi 46.2 3.9E+02 0.0085 31.3 13.9 83 1551-1643 138-220 (287)
408 PF04388 Hamartin: Hamartin pr 44.3 2.5E+02 0.0055 37.6 14.0 110 87-203 51-161 (668)
409 COG5657 CSE1 CAS/CSE protein i 43.8 1E+03 0.022 32.4 44.2 178 613-801 507-691 (947)
410 smart00299 CLH Clathrin heavy 43.8 87 0.0019 32.4 8.0 87 1286-1379 8-94 (140)
411 PF07571 DUF1546: Protein of u 43.5 76 0.0016 30.2 6.6 59 742-802 18-77 (92)
412 KOG1125 TPR repeat-containing 43.0 1.1E+02 0.0025 38.5 9.5 90 1693-1802 300-389 (579)
413 PF04388 Hamartin: Hamartin pr 42.9 2.1E+02 0.0045 38.4 12.9 91 600-693 71-162 (668)
414 KOG1586 Protein required for f 42.2 3.7E+02 0.0079 30.3 12.0 128 1567-1723 32-165 (288)
415 PF11841 DUF3361: Domain of un 42.1 1.8E+02 0.004 30.7 9.6 97 125-222 31-130 (160)
416 PF04510 DUF577: Family of unk 41.3 4.4E+02 0.0096 28.2 12.1 98 258-357 60-168 (174)
417 PF12054 DUF3535: Domain of un 40.8 8.6E+02 0.019 30.8 20.1 56 168-226 102-158 (441)
418 PF11698 V-ATPase_H_C: V-ATPas 40.7 74 0.0016 31.8 6.1 69 154-223 45-115 (119)
419 PF13428 TPR_14: Tetratricopep 40.6 58 0.0013 25.8 4.7 31 1570-1600 2-32 (44)
420 PLN02789 farnesyltranstransfer 40.5 7.3E+02 0.016 29.9 23.4 135 1569-1756 37-172 (320)
421 COG5537 IRR1 Cohesin [Cell div 39.9 5.8E+02 0.013 32.7 14.6 114 555-670 269-385 (740)
422 PF03542 Tuberin: Tuberin; In 39.8 5E+02 0.011 31.7 14.2 93 295-391 211-303 (356)
423 cd03568 VHS_STAM VHS domain fa 39.8 4.4E+02 0.0095 27.6 12.1 77 682-763 36-114 (144)
424 PF03542 Tuberin: Tuberin; In 39.5 6.1E+02 0.013 31.0 14.9 148 856-1019 140-302 (356)
425 KOG4162 Predicted calmodulin-b 39.3 1.1E+03 0.023 31.5 31.1 135 1569-1756 650-784 (799)
426 PF00790 VHS: VHS domain; Int 39.3 4.6E+02 0.0099 27.2 14.0 91 664-763 27-122 (140)
427 KOG0553 TPR repeat-containing 39.0 2.1E+02 0.0044 33.5 10.1 83 1668-1781 118-200 (304)
428 KOG0548 Molecular co-chaperone 38.9 1.8E+02 0.004 36.5 10.3 40 1362-1404 434-473 (539)
429 KOG0890 Protein kinase of the 38.8 5.5E+02 0.012 38.7 16.2 183 615-809 896-1119(2382)
430 PF11701 UNC45-central: Myosin 38.5 2.1E+02 0.0045 30.5 9.8 122 205-336 16-141 (157)
431 KOG1087 Cytosolic sorting prot 37.3 2.5E+02 0.0054 35.5 11.4 107 563-674 7-115 (470)
432 cd03561 VHS VHS domain family; 37.3 1.9E+02 0.0041 29.8 9.0 74 281-354 37-116 (133)
433 PF13181 TPR_8: Tetratricopept 36.8 42 0.00092 24.6 3.1 23 1361-1383 8-30 (34)
434 KOG0550 Molecular chaperone (D 36.7 1.3E+02 0.0029 36.3 8.4 91 1569-1683 249-339 (486)
435 KOG1174 Anaphase-promoting com 36.7 1.7E+02 0.0038 35.3 9.2 76 1613-1720 438-513 (564)
436 KOG0547 Translocase of outer m 35.7 7.2E+02 0.016 31.2 14.3 154 1567-1775 426-579 (606)
437 PF09477 Type_III_YscG: Bacter 35.6 2E+02 0.0044 28.0 7.8 55 1395-1456 44-98 (116)
438 KOG4199 Uncharacterized conser 35.1 8.4E+02 0.018 29.0 17.7 147 601-756 285-441 (461)
439 PF04781 DUF627: Protein of un 35.0 96 0.0021 30.5 5.8 84 1619-1719 2-85 (111)
440 KOG3036 Protein involved in ce 34.9 7.3E+02 0.016 28.3 14.6 138 661-802 98-246 (293)
441 PF12830 Nipped-B_C: Sister ch 34.7 3.8E+02 0.0082 29.4 11.4 81 107-193 5-85 (187)
442 COG4700 Uncharacterized protei 34.5 6.4E+02 0.014 27.4 13.2 124 1567-1726 122-245 (251)
443 PF11919 DUF3437: Domain of un 34.0 50 0.0011 31.2 3.7 53 255-308 4-56 (90)
444 COG3063 PilF Tfp pilus assembl 33.7 6.9E+02 0.015 28.3 12.6 116 1567-1721 67-182 (250)
445 KOG2213 Apoptosis inhibitor 5/ 33.0 9.8E+02 0.021 29.2 17.4 93 302-396 222-319 (460)
446 PF14868 DUF4487: Domain of un 32.6 1.3E+03 0.027 30.3 16.9 204 21-229 337-558 (559)
447 CHL00033 ycf3 photosystem I as 32.3 6.4E+02 0.014 26.8 14.3 113 1616-1756 38-150 (168)
448 PF13181 TPR_8: Tetratricopept 32.3 86 0.0019 22.9 4.2 32 1673-1710 2-33 (34)
449 PF09324 DUF1981: Domain of un 32.1 1.2E+02 0.0026 28.5 5.9 66 1028-1093 17-84 (86)
450 PF14225 MOR2-PAG1_C: Cell mor 32.0 5.8E+02 0.012 29.8 12.7 75 1023-1101 183-258 (262)
451 PF10350 DUF2428: Putative dea 31.8 7.9E+02 0.017 28.5 14.0 144 107-252 93-253 (255)
452 KOG0276 Vesicle coat complex C 31.7 2.9E+02 0.0063 35.2 10.4 170 1339-1544 600-778 (794)
453 cd03572 ENTH_epsin_related ENT 31.6 1.7E+02 0.0037 29.5 7.1 43 599-641 38-80 (122)
454 KOG1222 Kinesin associated pro 31.4 1.1E+03 0.024 29.3 26.1 65 282-349 346-412 (791)
455 PF10373 EST1_DNA_bind: Est1 D 31.3 2.6E+02 0.0057 32.7 10.5 44 1698-1755 2-45 (278)
456 KOG2085 Serine/threonine prote 31.1 3.4E+02 0.0073 33.1 10.4 90 938-1037 297-389 (457)
457 COG4783 Putative Zn-dependent 30.8 3.6E+02 0.0078 33.7 11.0 109 1576-1725 313-421 (484)
458 PF08146 BP28CT: BP28CT (NUC21 30.7 3E+02 0.0065 29.1 9.3 75 149-223 56-147 (153)
459 PF14225 MOR2-PAG1_C: Cell mor 30.2 9.4E+02 0.02 28.1 17.3 200 178-394 47-257 (262)
460 cd00197 VHS_ENTH_ANTH VHS, ENT 30.2 3.9E+02 0.0084 26.5 9.8 70 599-668 37-112 (115)
461 smart00386 HAT HAT (Half-A-TPR 30.0 96 0.0021 22.1 4.1 28 1694-1721 3-30 (33)
462 PF09324 DUF1981: Domain of un 29.8 2.1E+02 0.0046 26.8 7.2 65 642-712 19-83 (86)
463 PF12397 U3snoRNP10: U3 small 29.3 2.3E+02 0.005 28.5 8.0 71 725-802 2-73 (121)
464 PRK05255 hypothetical protein; 28.7 6.7E+02 0.014 27.1 11.3 113 1477-1596 51-166 (171)
465 PF12688 TPR_5: Tetratrico pep 28.3 3E+02 0.0064 27.8 8.4 65 1569-1643 38-102 (120)
466 KOG3785 Uncharacterized conser 27.6 4.5E+02 0.0097 31.2 10.4 107 1339-1454 36-148 (557)
467 PF00637 Clathrin: Region in C 27.4 32 0.00069 35.8 1.4 111 1289-1416 11-121 (143)
468 PF02184 HAT: HAT (Half-A-TPR) 27.1 1.1E+02 0.0023 22.8 3.5 27 1694-1721 3-29 (32)
469 PF14222 MOR2-PAG1_N: Cell mor 26.9 1.5E+03 0.034 29.5 27.4 155 254-412 145-320 (552)
470 KOG0543 FKBP-type peptidyl-pro 26.8 3.5E+02 0.0077 33.0 9.9 60 1670-1756 262-321 (397)
471 cd05804 StaR_like StaR_like; a 26.8 1.2E+03 0.026 28.2 26.5 105 1536-1644 231-335 (355)
472 PF04840 Vps16_C: Vps16, C-ter 26.7 1.2E+03 0.026 28.1 19.3 45 1286-1344 1-45 (319)
473 PF04751 DUF615: Protein of un 26.6 3.6E+02 0.0078 28.6 8.9 113 1477-1596 40-155 (157)
474 cd03567 VHS_GGA VHS domain fam 26.1 7.5E+02 0.016 25.7 11.0 74 281-354 38-120 (139)
475 smart00288 VHS Domain present 26.1 5.1E+02 0.011 26.6 9.9 77 682-763 36-115 (133)
476 smart00185 ARM Armadillo/beta- 26.0 90 0.0019 23.9 3.5 27 195-221 13-39 (41)
477 PF11701 UNC45-central: Myosin 26.0 3.2E+02 0.007 29.0 8.7 95 124-222 18-116 (157)
478 smart00185 ARM Armadillo/beta- 25.9 95 0.0021 23.7 3.6 28 1069-1096 13-40 (41)
479 KOG2973 Uncharacterized conser 25.7 2.9E+02 0.0062 32.4 8.4 106 601-716 5-110 (353)
480 PF08161 NUC173: NUC173 domain 24.9 9.8E+02 0.021 26.6 15.8 165 915-1095 16-197 (198)
481 PF14961 BROMI: Broad-minded p 24.7 1.2E+03 0.027 32.9 15.0 74 1030-1103 163-237 (1296)
482 PRK10866 outer membrane biogen 24.7 1.1E+03 0.024 27.1 19.3 179 1567-1784 30-230 (243)
483 COG2956 Predicted N-acetylgluc 24.2 1.3E+03 0.028 27.6 14.8 179 1324-1516 65-273 (389)
484 PF12569 NARP1: NMDA receptor- 24.2 1.7E+03 0.036 29.0 28.2 65 1568-1645 227-291 (517)
485 PHA02593 62 clamp loader small 23.8 1.3E+02 0.0029 32.2 5.0 38 1435-1490 16-53 (191)
486 KOG1048 Neural adherens juncti 23.7 7E+02 0.015 33.2 12.3 147 158-309 524-683 (717)
487 PF13525 YfiO: Outer membrane 23.3 1E+03 0.023 26.3 16.0 179 1566-1783 2-195 (203)
488 cd03565 VHS_Tom1 VHS domain fa 22.8 5.3E+02 0.012 26.8 9.3 108 687-802 4-114 (141)
489 PRK15180 Vi polysaccharide bio 22.7 1E+02 0.0022 37.5 4.5 53 1363-1418 332-384 (831)
490 KOG0543 FKBP-type peptidyl-pro 22.7 6.3E+02 0.014 31.0 10.9 21 1292-1312 222-242 (397)
491 KOG2199 Signal transducing ada 22.6 5.4E+02 0.012 31.1 10.0 57 573-634 24-80 (462)
492 PF04078 Rcd1: Cell differenti 22.6 4.4E+02 0.0095 30.4 9.1 101 701-802 109-217 (262)
493 PRK10803 tol-pal system protei 22.5 6.3E+02 0.014 29.5 11.0 52 1364-1415 190-241 (263)
494 PF13041 PPR_2: PPR repeat fam 21.9 1.6E+02 0.0035 24.0 4.4 37 1363-1401 12-48 (50)
495 TIGR03092 SASP_sspI small, aci 21.8 1.4E+02 0.003 26.0 3.7 27 1232-1258 39-65 (65)
496 KOG0624 dsRNA-activated protei 21.7 1.3E+03 0.029 27.5 12.6 30 1693-1722 53-82 (504)
497 KOG4162 Predicted calmodulin-b 21.1 2.1E+03 0.045 29.0 18.0 165 1569-1780 357-526 (799)
498 KOG2041 WD40 repeat protein [G 21.0 1.2E+03 0.026 30.5 13.0 150 1288-1456 695-851 (1189)
499 cd03569 VHS_Hrs_Vps27p VHS dom 21.0 9.6E+02 0.021 25.0 14.2 90 665-763 27-118 (142)
500 KOG3060 Uncharacterized conser 20.5 1.3E+03 0.029 26.5 22.3 151 1574-1785 57-207 (289)
No 1
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=4.2e-152 Score=1532.99 Aligned_cols=1759 Identities=41% Similarity=0.693 Sum_probs=1532.1
Q ss_pred HHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccC
Q 000194 24 DALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102 (1880)
Q Consensus 24 ~~~~~l~~~l~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~ 102 (1880)
..+..++..|++++. .+.+|++|+..+|....++++.+.+.+|.+.++++++++.+..+.+.+.||+.++..++.+...
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t 84 (2341)
T KOG0891|consen 5 SVLKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGT 84 (2341)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhc
Confidence 378899999999875 4445999999999999999999999999999999999999999999999999999999888622
Q ss_pred c-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHH
Q 000194 103 E-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMA 181 (1880)
Q Consensus 103 ~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la 181 (1880)
+ ......++.+||+.+++ +.|..++..|++++|.++..++...+++++++++.+++|+ ++..+.+|++|+...+.++
T Consensus 85 ~~~~~~~s~~~n~l~~l~~-~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~-~~~~~~~~~~a~~~~~~l~ 162 (2341)
T KOG0891|consen 85 EHDRKNISRLANYLRYLLP-SNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWL-GERQEYRRLAAVLIIKELA 162 (2341)
T ss_pred ccccchhHhHHHHHHHhhc-cCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-hhhhhhhhHHHHHhhhhHh
Confidence 2 34557899999999998 5699999999999999999999999999999999999999 6777889999999999999
Q ss_pred hhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000194 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1880)
Q Consensus 182 ~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al 261 (1880)
.++|..++|+++.++..+|.+++|+++.+|..|+.|++.++..+.+|+.....+||+.+++.+..++..+. .. .|+++
T Consensus 163 ~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~-~~-~~~~~ 240 (2341)
T KOG0891|consen 163 DNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDG-VK-IHASL 240 (2341)
T ss_pred hcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchH-HH-hhhHH
Confidence 99999999999999999999999999999999999999999999988877888999999999999988753 23 89999
Q ss_pred HHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchH
Q 000194 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSG 341 (1880)
Q Consensus 262 ~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a 341 (1880)
++++++.+....++ .+++.++.........++..++..+...+|.+|.+.+..|...|++..|.+++..+.+.+ ..|
T Consensus 241 ~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~ 317 (2341)
T KOG0891|consen 241 LVYNELLRISDPFL-EKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK--TRA 317 (2341)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc--hhH
Confidence 99999999776555 778888888888888999999999999999999999999988999999999999988433 899
Q ss_pred HHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCC---CCCchHHHHHHHHHHHhCCCchHHH-HHHHHHHHhcCCCHHH
Q 000194 342 FIALGEMAGALDGELFHYLPTITSHLREAIAPRRG---KPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTL 417 (1880)
Q Consensus 342 ~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~---~~~~~a~~~l~~la~~~g~~~~~~l-~~ll~~l~~~~ls~~l 417 (1880)
+..||.+|.+++..+.+|...|...|.+.+..... +-....|.|++.++.++|+.+..++ ..+|+.++.++.++.+
T Consensus 318 ~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~~~~~~l 397 (2341)
T KOG0891|consen 318 FVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFKCTLSDSL 397 (2341)
T ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcCCchHHH
Confidence 99999999999999999998888888887754311 1134789999999999999776666 7899999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-cCCCccccccCCchhHHHHHHhhcccccCC
Q 000194 418 VDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNV-MNIPQQVSDLNGSAPVQLALQTLARFNFKG 496 (1880)
Q Consensus 418 ~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~ 496 (1880)
.+++..++..+|++.+.+++++++.++.++.|..+.+++.......... .....+.++ +...+..|+++++.|.|.+
T Consensus 398 ~e~l~~l~~rl~~l~~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~~~~~~~~--~~~~~~~a~~~l~~~~~~~ 475 (2341)
T KOG0891|consen 398 LERLFILSQRIPKLGQSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKAILQKTGD--STDDIQLAFKTLGGFKFSG 475 (2341)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHhCccccCccccCccchhcccchhhhhccc--ccHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999988776433211110000 001111222 2223678999999999999
Q ss_pred CcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChh
Q 000194 497 HDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVT 576 (1880)
Q Consensus 497 ~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~ 576 (1880)
+....|++.++..|++++++++|+.|+.+||.++..+.. ..++++...+.+..++.+++..+++|+|+.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~-----------~~~~~~~~~~~v~~vl~~ll~~aia~~~~~ 544 (2341)
T KOG0891|consen 476 YSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDII-----------CSQTSPHALQVVKEVLSALLTVAIADTDPD 544 (2341)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhh-----------hhcccchHHHHHHHHHHHHHHHhccCCCcc
Confidence 999999999999999999999999999999999987653 224555566789999999999999999999
Q ss_pred HHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCCh
Q 000194 577 VRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADN 656 (1880)
Q Consensus 577 vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~ 656 (1880)
+|.+++.+++ .+|+++++|+++++.++.+++|+...++..+..++|+++..||++++|++|+..+..++.++.+ +..
T Consensus 545 i~~~v~~~l~--~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~s-g~~ 621 (2341)
T KOG0891|consen 545 IRIRVLSSLN--ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFS-GMA 621 (2341)
T ss_pred hhhhHHhhhc--cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhc-chH
Confidence 9999999996 7999999999999999999999999999999999999999999999999999999999999998 888
Q ss_pred HhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH
Q 000194 657 KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1880)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~ 736 (1880)
+..++.+..++.++...+..+.||+.+++..+++.+.+. .+.+..++..++++|+.++|+.+..+++.+++.+.+
T Consensus 622 r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~-----~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~ 696 (2341)
T KOG0891|consen 622 RTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDP-----SSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIK 696 (2341)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhcc-----chhhHHHHHHHHHHHHHhccchhhhccchHHHHHHH
Confidence 888999999999999999999999999999999999986 668888999999999999999999999999999999
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccC
Q 000194 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLS 816 (1880)
Q Consensus 737 ~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~ 816 (1880)
.++|.++..+|.++++++|++.+.+|+++.||.++|.+++.+.+.++++....+|+++++.+|.+|++|||+++......
T Consensus 697 ~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~ 776 (2341)
T KOG0891|consen 697 MLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTS 776 (2341)
T ss_pred HHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhh
Confidence 99998888999999999999999999999999999999999999999888999999999999999999999987654321
Q ss_pred CCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC
Q 000194 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1880)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~ 896 (1880)
..... . ........+....... .+..++||+.+.+..|+.+++|++++.+|..++++++.||.++|.+|..|
T Consensus 777 ~~~~~-~----~~~k~~~~~~~~~~~~---~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~ 848 (2341)
T KOG0891|consen 777 ASKIS-S----EQIKSDIDISLLESGV---NPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLF 848 (2341)
T ss_pred hHhhh-h----ccccccchHHHHHhhh---hhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhh
Confidence 00000 0 0000000111011111 23448899999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHH
Q 000194 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLA 976 (1880)
Q Consensus 897 l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~ 976 (1880)
+++++|.++.+.+.+..+.+++++.+++.++-.+++|+++|++.++..+.++|+... .++.+++.+++.+..+
T Consensus 849 l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~~~~-------~l~~~~~~l~~~i~~~ 921 (2341)
T KOG0891|consen 849 LDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWPPDT-------SLQITIISLIEDIAVA 921 (2341)
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhhhHH-------HHHHHHHHHHHHHHHH
Confidence 999999999999999899999999999999999999999999999999999997322 1345789999999999
Q ss_pred hhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHh
Q 000194 977 LNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTR 1055 (1880)
Q Consensus 977 l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~-~~~~vr~~ai~~l~~ 1055 (1880)
++.+|+.|+|..++..+..+ ..+++.++.....++.++..+|...+.|.|.+.|.++++++.. .+..+|..++.+++.
T Consensus 922 l~~~f~~~l~~~~~~~l~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~ 1000 (2341)
T KOG0891|consen 922 LGGEFKKYLPELLPTMLTVL-QHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGR 1000 (2341)
T ss_pred HHhHHHHhhhhhccchheee-cccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHH
Confidence 99999999999999999999 5567777888888999999999999999999999999999875 678899999999999
Q ss_pred hcccccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhCCCCchhHHHHHHHHhcCC
Q 000194 1056 LIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRRE 1135 (1880)
Q Consensus 1056 l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~~~~~~~~~~~~~~~~~~~~~ 1135 (1880)
+..++++..|.++|++++.|.+... .+++..++++|+.+..++|..|.+|+|++.+.+...++.|..|+..+.++..+.
T Consensus 1001 l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (2341)
T KOG0891|consen 1001 LAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLGKDFAIFIPMVNKKLVEHRIQHSTYDELVSKLLQNE 1079 (2341)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCceeehHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999987 999999999999999999999999999999999999999999999999999888
Q ss_pred CcccCchhHhhhhccCCccccCCCCCCCCCCCCCCCchhhhh-ccccccCCCCChhhHHHHHHHHHHHHHhcCCCHHHHH
Q 000194 1136 PLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQKQ-LRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRT 1214 (1880)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~W~~~~~~~ll~~sps~~ir~ 1214 (1880)
+++.+......+. .|.... .+...+.. +....... .+.|...++.+++||.+|.++.++.+++++||+++|+
T Consensus 1080 ~l~~~~~~~~~~~--~~~~~~----~~~~~~~~-~l~~~~~~l~~~w~~~~~~s~d~~~e~~~~~~i~~lk~~~s~~lr~ 1152 (2341)
T KOG0891|consen 1080 PLPDDVLSAGESD--RPSRQM----NSDPADVT-KLPVNQNALKKAWESSQRVSKDDWQEWIRRLSIELLKESPSHALRA 1152 (2341)
T ss_pred ccCcccccccccc--Cccccc----cccccccc-hhhhhHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhcchhhHHH
Confidence 7765432111100 000000 00000000 11111111 2334467889999999999999999999999999999
Q ss_pred HHHHHhhChhhHHHhHhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 000194 1215 CARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGAL 1294 (1880)
Q Consensus 1215 c~~la~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~p~~i~q~ll~l~efm~~~~~~l~i~~~~l~~~ 1294 (1880)
|..++..+.++++++||++|.|||.+++++.|..+.+.++-+++++++| +++|+++|++|||+|+++|+||+..+|+..
T Consensus 1153 ~~~l~~~~~~l~r~~f~~~~~s~w~e~~~~~q~~l~~~le~~~~~~~i~-e~~q~l~nl~ef~eh~~~plpi~~~~L~~~ 1231 (2341)
T KOG0891|consen 1153 CSSLAQAYYPLARDLFNAAFVSCWTELDSSYQNDLIKSLEIALSSPDIP-EIIQTLLNLAEFMEHDDKPLPIPIKTLGLY 1231 (2341)
T ss_pred HHhhhhhccccchhhhhHHHHHHhhhcccchhhhhhhhHHHHHhCCccH-HHHHhhhhHHHHHHhcccCCCcchhhHHHH
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHH
Q 000194 1295 AEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDAL 1374 (1880)
Q Consensus 1295 a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~W~~Al 1374 (1880)
+.+|++|++||+|+|.+|... ...++++.++.+++.++++|.+.|+.+++++....++++.|||++.+|++|+
T Consensus 1232 ~~~c~a~~~~l~y~el~~~~~-------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~l~~~~d~l 1304 (2341)
T KOG0891|consen 1232 AEKCRAYAKALHYKELEFLKE-------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEKLHRWEDAL 1304 (2341)
T ss_pred HHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhcccccccchhHh
Confidence 999999999999999999754 2357899999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcC
Q 000194 1375 KAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLD 1454 (1880)
Q Consensus 1375 ~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~ 1454 (1880)
.+|+........ ..+...|.|+|+.++|+|+.+.......|.....+.+..++|.++.++|.+++|+.+.+|++.++
T Consensus 1305 ~a~~~~~~~~~~---~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~~~~~~~~~~ap~a~~~~~~~~~w~~~~~~~s~~~ 1381 (2341)
T KOG0891|consen 1305 AAYELREKAGDS---SFELRMGKMRCLEALGDWDELSQLASEKWEVAGQEAKHKMAPLAAAAAWGLGQWDTMAEYVSVMS 1381 (2341)
T ss_pred hhhhcccchhhh---hHHHHhhhhhhhhhhhhHHHHhhhhcccCCCcchhHHHHHHHHHHHhhhccccchhhhhhccccc
Confidence 999987643222 24678999999999999999998888899888888899999999999999999999999998877
Q ss_pred CCCcchhhccccccccCCCCCchHHHHHHHHHHhcC----------------------hhhhHHHHHHHHHHhHhhhhHH
Q 000194 1455 DGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK----------------------VLESYERAYSNMVRVQQLSELE 1512 (1880)
Q Consensus 1455 ~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~----------------------~~esy~ray~~l~~lq~L~ELe 1512 (1880)
.. +.+..|+++++++|+.. ..|||+|+|..++..|++.|+|
T Consensus 1382 ~~-----------------~~~~~~~~a~~a~~~~~~~~~~~~~~~~~dll~~e~~~~~~Es~sr~y~~~~~~~~~~e~E 1444 (2341)
T KOG0891|consen 1382 ED-----------------SQDKAFFRAILALHRDEFEKAVKLIERARDLLDTELTAMAGESYNRAYGVMVRAQMLAELE 1444 (2341)
T ss_pred cc-----------------chhhHHHHHHHhhhhhHHHHHHHhcccHHHHHHHHHHHHHhhHHhhchhhhhhhhhhhhHH
Confidence 53 56788999998888742 4699999999999999999999
Q ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHH
Q 000194 1513 EVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTL 1592 (1880)
Q Consensus 1513 E~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L 1592 (1880)
|+++|++.+ +++..+.+.|.+|+.+|++..++|++++.+|.++++|+++..+|+||+.+|||+|+..++.+.+
T Consensus 1445 ~~~~~k~~~-------~r~~~i~~~~~~~l~~~q~~~~~wq~~lr~~~~v~~p~~~~~~~ik~a~~cr~s~~~~l~~~~l 1517 (2341)
T KOG0891|consen 1445 EIIEYKKLP-------ERRPIIAKTWWKRLQGCQKNVDDWQRILRVRSLVLSPQEDMEMWIKFASLCRKSGRLALARKLL 1517 (2341)
T ss_pred HHHHhhccc-------chhHHHHHHHHhhHHHhhccHHHHHHHHHHhhhccCCCcchHHHHHHHHHhHHhHHHHHHHHHH
Confidence 999999765 4567789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc-ccc-ccccCcchhh
Q 000194 1593 VKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS-TSL-TTATSTNVPL 1670 (1880)
Q Consensus 1593 ~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l 1670 (1880)
..+++-.+............|.+++++.|++|..+. ..+|++.+..+...+..+....++.. ... .+.......+
T Consensus 1518 ~~~L~~~~~~~~~~~~~~~~P~~v~a~~~~~~~~~~---~~~~~~~~~~~~s~l~~d~~~~~~~~~~~~~~~~~~~~~~l 1594 (2341)
T KOG0891|consen 1518 NELLERDPSSDLPLPLKARLPQVVYAYLKYLWATDS---KDEAINTLQEFTSTLNSDLGSDPDELLSEPTEAEKQEYTKL 1594 (2341)
T ss_pred HHHHhcCccccccccccccChHHHHHHHhHHHhhcc---chHHHHHhHHHHHHHHhhcCCCchhhhhcccchhhhHHHHH
Confidence 998876654432222244579999999999999985 57899999887766554322111000 000 1112445788
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhc---c---------------
Q 000194 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTL---R--------------- 1732 (1880)
Q Consensus 1671 ~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~---~--------------- 1732 (1880)
.|+|++++|+|......+++...++.++++|..|+.+++.|||+||.||..||+.+...+. .
T Consensus 1595 ~a~~~l~~~~w~~~~~~s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~~V~~l~~~~~~~~~~~~~~~~~~~~~ 1674 (2341)
T KOG0891|consen 1595 LARCFLKLGEWQQLLQDSWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFEVVQMLKQVTKAKYAPGANIWNMPDYL 1674 (2341)
T ss_pred HHHHHHhhccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccccchhhc
Confidence 9999999999999888888888899999999999999999999999999999998875211 0
Q ss_pred ---CCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHH
Q 000194 1733 ---GLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQII 1809 (1880)
Q Consensus 1733 ---~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLi 1809 (1880)
.+......|+++|++|||+++.++ .++.+||++|+++|||+||+..+|..++..++..++++.|+.++|||+
T Consensus 1675 ~~~~~~~~~~~~~v~avk~ff~~~~~~-----~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl~~ipqLi 1749 (2341)
T KOG0891|consen 1675 GSNSDLMLIHHYAVPAVKGFFRSISLS-----PGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWLEVIPQLI 1749 (2341)
T ss_pred cCcCCccchHHHHHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHHHhHHHHH
Confidence 111234579999999999999996 345599999999999999999999999999999999999999999999
Q ss_pred HhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccccccccccc
Q 000194 1810 ARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQSCY 1877 (1880)
Q Consensus 1810 aRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R~~~a~~Il~~~~~~~~~lv~~a~~ 1877 (1880)
|||+.+...+++.+++++..+|+.||||++|+++++++|.+..|+++|..|+++|+.|++.||+||.+
T Consensus 1750 ari~~~~~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv~~a~l 1817 (2341)
T KOG0891|consen 1750 ARIHTPDQLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLVRQARL 1817 (2341)
T ss_pred HHHhccchHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999975
No 2
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.5e-56 Score=582.23 Aligned_cols=639 Identities=17% Similarity=0.274 Sum_probs=496.6
Q ss_pred HHHHHHHHHHHHHhcCC----CHHHHHHHHHHhhChhhHHHhHhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCC-----
Q 000194 1192 WAEWMRHLSIELLKESP----SPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNI----- 1262 (1880)
Q Consensus 1192 w~~W~~~~~~~ll~~sp----s~~ir~c~~la~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~----- 1262 (1880)
+.+|+.+++..+|...+ ++.+.+|+.....+..+...|.|++.+-|....+++.|..+.+.+..+|.....
T Consensus 1237 ~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~~~~~~t~ns 1316 (2382)
T KOG0890|consen 1237 YREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLDEAATNTINS 1316 (2382)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhccccccccc
Confidence 88999999999888733 567777777777777899999999999999999999899999998888876321
Q ss_pred -----ChHHHHHHHHHHHHhhhCC----------C----------------------------CC-CCCHHHHHHHHHhc
Q 000194 1263 -----PPEILATLLNLAEFMEHDE----------K----------------------------PL-PIDIRLLGALAEKC 1298 (1880)
Q Consensus 1263 -----p~~i~q~ll~l~efm~~~~----------~----------------------------~l-~i~~~~l~~~a~~c 1298 (1880)
.+-.+|++..+.||+.+.. + .| -||..+|+.++.+|
T Consensus 1317 ~~~~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R~~~~~~~~Tt~~~~~~~v~~fL~~iP~~tLa~aSfrc 1396 (2382)
T KOG0890|consen 1317 RGTASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNRFWKSIMSWTTTGEDIEGVQSFLDLIPSDTLARASFRC 1396 (2382)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhheeeeccccCCCchhhhHHHHhhccHHHHHHHHHhh
Confidence 1346788888888776531 0 02 47888999999999
Q ss_pred cchhhhhhhccchhcccccccCCCCcHH-HHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHH
Q 000194 1299 RAFAKALHYKEMEFEGARSNRMDANPVA-VVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAY 1377 (1880)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~-~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~W~~Al~~y 1377 (1880)
++|++|++|+|.++..... .+..+ ..-.|..+|..|+|||++.|+.......+.+..+-.-+|..|+|.+|..||
T Consensus 1397 ~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cy 1472 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACY 1472 (2382)
T ss_pred HHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHH
Confidence 9999999999998432211 11222 334556699999999999999984333334444444599999999999999
Q ss_pred HHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCC
Q 000194 1378 TNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGD 1457 (1880)
Q Consensus 1378 ~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~ 1457 (1880)
++..+.+++. ...+.|.++|..++|+++++....++.|.. .+++..++..+..+|+|++++||.+++|.. +.+.
T Consensus 1473 e~~~q~~p~~---~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--~~n~ 1546 (2382)
T KOG0890|consen 1473 ERLIQKDPDK---EKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--DRNI 1546 (2382)
T ss_pred HHhhcCCCcc---ccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh--cccc
Confidence 9998765442 235789999999999999999988888754 456677888899999999999999999988 3222
Q ss_pred cchhhc-cccccccCCCCCchHHHHHHHHHHhcC--------hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchh
Q 000194 1458 ESKLRG-LGNTAANGDGSSNGTFFRAVLLVRRGK--------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAE 1528 (1880)
Q Consensus 1458 ~~~~~~-l~~~~~~~~~~~~~~f~~a~~~i~~~~--------~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~ 1528 (1880)
.+.-.. +|..+........-.|+..+--.+... ..+||.|+|+.++++|++.|+++.++.......+.
T Consensus 1547 e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~--- 1623 (2382)
T KOG0890|consen 1547 EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDE--- 1623 (2382)
T ss_pred cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccc---
Confidence 221122 455544444444445555443322211 23499999999999999999999998664322111
Q ss_pred hHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCc-------ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000194 1529 GRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPT-------EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1880)
Q Consensus 1529 ~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~-------e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1880)
.-..-...|..|+..+++++...++||+.|+.++... +..++|+++|++||++|+++.|.++|.++...
T Consensus 1624 -~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--- 1699 (2382)
T KOG0890|consen 1624 -DSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--- 1699 (2382)
T ss_pred -cccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---
Confidence 1111237899999999999999999999999998631 34899999999999999999999999988754
Q ss_pred CCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhh
Q 000194 1602 TSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSW 1681 (1880)
Q Consensus 1602 ~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w 1681 (1880)
..|.+.+|+||++|.+|+ ...|+..|++.+...-.+. +. ..+. .+ ...+-....++.+++|+|
T Consensus 1700 ---------r~~~i~~E~AK~lW~~gd---~~~Al~~Lq~~l~~~~~~~--~~-~~~~-~p-~~~n~~i~~~~~L~~~~~ 1762 (2382)
T KOG0890|consen 1700 ---------RLPEIVLERAKLLWQTGD---ELNALSVLQEILSKNFPDL--HT-PYTD-TP-QSVNLLIFKKAKLKITKY 1762 (2382)
T ss_pred ---------ccchHHHHHHHHHHhhcc---HHHHHHHHHHHHHhhcccc--cC-Cccc-cc-hhhhhhhhhhHHHHHHHH
Confidence 258999999999999996 4789999999885432210 00 0000 00 112234456899999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCC--CchhhHHHHHHHHHHHHHhhcccc
Q 000194 1682 KRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLP--SVAPQFVVHAVTGYFHSIACAAHA 1759 (1880)
Q Consensus 1682 ~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~--~~~~~~~~~ai~~y~~si~~~~~~ 1759 (1880)
+.++. .-..++++++|+.|++..|+|++.+++.|.|.++++..+.....+ .....|++ ++-.|++|+.+|
T Consensus 1763 ~~es~----n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~-~~~~~~~sl~yg--- 1834 (2382)
T KOG0890|consen 1763 LEESG----NFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK-AIYFFGRALYYG--- 1834 (2382)
T ss_pred HHHhc----chhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH-HHHHHHHHHHhc---
Confidence 99875 245799999999999999999999999999999998876432211 13345777 999999999885
Q ss_pred CCCcchHHhHHHHHHHHHhcCCcH-----------------HHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHH
Q 000194 1760 KGVDDSLQDILRLLTLWFNHGATE-----------------EVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVREL 1822 (1880)
Q Consensus 1760 ~~~~~~~q~~~RlLtLwf~~g~~~-----------------~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~~~~~~v~~~ 1822 (1880)
+.+.+|.||||+|||+|+|... .++..+.+++..+|+|.||++.+||+|||+||+.+|.++
T Consensus 1835 --~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~dV~~v 1912 (2382)
T KOG0890|consen 1835 --NQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQDVARV 1912 (2382)
T ss_pred --chhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCchHHHHH
Confidence 6889999999999999985432 245667889999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccc---ccccc
Q 000194 1823 IQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSG---VLVDQ 1874 (1880)
Q Consensus 1823 l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R~~~a~~Il~~~~~~~~---~lv~~ 1874 (1880)
|.+||.++..+|||+++|.+++.+||..+.|+++|+.|+++-+.+++ +||.+
T Consensus 1913 l~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~~~~l~~d 1967 (2382)
T KOG0890|consen 1913 LKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPDYKKLLSD 1967 (2382)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 99999999999999999999999999999999999999998887666 55533
No 3
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-53 Score=595.91 Aligned_cols=1512 Identities=22% Similarity=0.252 Sum_probs=1094.7
Q ss_pred hHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchh
Q 000194 275 MMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG 354 (1880)
Q Consensus 275 ~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~ 354 (1880)
+...++.++........+....++ .+.-+++....+.+.-|.. |.+..|+.++....+......... +++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~s~~f~~-~~~~~~~~i~~~~~~~~~~~~~~~-------~~~- 119 (2105)
T COG5032 50 LSNVNDLVRNSTQSLLNTISNLIK-IVKFVLPLKSFFLSPIFAK-LRALPMTKILCISADTYCLSLSIK-------ALA- 119 (2105)
T ss_pred hcchHHHHHhhhhhhhhhhhhhhh-HHHHHHHHHHhhccHHHHH-HhccchhHHhhhhhhhhhhcccch-------hhh-
Confidence 445666677777776677777777 7888899999999999998 988888886665543322221111 222
Q ss_pred hhhhhhhHHHHHHHHhhcCCC-CCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChH
Q 000194 355 ELFHYLPTITSHLREAIAPRR-GKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLP 433 (1880)
Q Consensus 355 ~~~p~l~~i~~~l~~~l~~~~-~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~ 433 (1880)
+.++++.+...+++.+ .+- -+.+ ..|.|+|..+..+++.+..++..++.....+.+++........+.+.++.+.+
T Consensus 120 -~~~~~~~~~~~~~~~~-~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~e~~~~~~~ 196 (2105)
T COG5032 120 -DDESLTTILKTIRELL-SKFLLRLR-LLFLFIGLLAQKFSEAQSKLFFKLLLSILKEILSDAYEALLNDLLENLKSLKE 196 (2105)
T ss_pred -ccHHHhHHHHHHHHHh-HHHHHHHH-HHHHHHHHHhhhhhHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHhhcccchH
Confidence 4678888888888888 432 1222 67899999999998887777766665556667788888888888899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-------cCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHH
Q 000194 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNV-------MNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506 (1880)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~ 506 (1880)
+++.++.+++...+.|..|.............. .....-.....+.+.....+..+..+.+. ..+..+++..
T Consensus 197 ~~~~~l~~~l~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~~~~ 275 (2105)
T COG5032 197 TLQNRLLPLLFNISDGNYFKVEIGRKLLDHLNALGQILDCQKIAKITKSFRSLPVIIKKFLNLLLIKVS-YYLPSFFRLS 275 (2105)
T ss_pred HHHHHHHHHHHhhcCccceeccccccchhhHHHhhhhhhccchhhhhhhhcCChhHHHHHHHHhhhHhe-eeccchhhhh
Confidence 999999999998888876654322211000000 00000000011122223333333333222 2344677888
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
...|+++.+..+++.+..+||.++.....+ .++.....+.+...+.+++...+.++.+++|..++..+.
T Consensus 276 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~i~-----------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (2105)
T COG5032 276 LLSYLDHFETDLFKTFLVTSCFLFFVDEIC-----------KPESEHLAEEVSEKLSKFLTIEIIDSFPEIRISALSSLL 344 (2105)
T ss_pred hhHhhcCcchhHHHHHHhhheeeeeecccc-----------CcccccchHHHHHHHHHHHhhhcccccHHHHHHHHhccc
Confidence 889999999999999999888777554421 122233455667777788888889999999999666663
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHH
Q 000194 587 GNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLL 666 (1880)
Q Consensus 587 ~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L 666 (1880)
..||.+++.++.+...+...+|..+..+..+....+++...+|+.+.|.+++.+.+....+..+ +.....+.....+
T Consensus 345 --~~fd~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~ 421 (2105)
T COG5032 345 --VIFDYHLALPDAVRLLFGESNDKVFLISELALDSTGRLLRVLPARVLPSLFEFLLSLLTVLKIS-GLILEFEISAQLL 421 (2105)
T ss_pred --cccCccccCHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccHHhhhhHHHHHHHHhhhhhhhc-chHHHHHHHHHHH
Confidence 6888899999999999999999999999999999999999999999999999999999988887 6777777888888
Q ss_pred HHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC-CchhhhHHhHHHHHHHHHhcCCchh
Q 000194 667 GCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 667 ~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
..++........++..+.+..+++...+. ........+..+|++...+| ..+.+|.....+.+...+++..+..
T Consensus 422 ~~~i~~~~~l~~~~~~~~~~~~l~~~~d~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 496 (2105)
T COG5032 422 CNLIRSSNQLLTSLISPYFLFILPKCIDS-----SNSEISYRVENLGELKDILGLDRITDYQALSLRLIIVSIQLRSFVF 496 (2105)
T ss_pred HHHHhhhHHhhhhhcchhHHhhhhHhhcc-----ccHHHHHHHHHHHHHHHHhhhhhccHHHHHhhhHhHHHHHHhhccc
Confidence 88998888888888888888888888875 35566677788999998888 5678888888888888888877778
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccccccc
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1880)
+|+++..++++++. .++.++.++|..+.....+.+......+|+.+.++.|.+|++||+.++...+......
T Consensus 497 ~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~p~~I~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~s~~~~----- 568 (2105)
T COG5032 497 KREAINQIFKQLAS---IVIKPFLDYPKRLDLPIKIVTVVYVALLRRPTEKLSGVLGSIDKYSHIESEEMSSSDF----- 568 (2105)
T ss_pred hhhHHHHHHHHHHH---hhhhhhhhhHHHhCcceeEEEeecchhhhHHHHHHHHHHHHhhHHHHHHHhcccccCC-----
Confidence 99999999999987 6678888888877777777666655666999999999999999987765433111000
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHH
Q 000194 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLF 905 (1880)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll 905 (1880)
........+ ....+....++.++.|.++....|+.+|+++..+.+|.+++++++.++..++..+.++.+.. |.++
T Consensus 569 --~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 643 (2105)
T COG5032 569 --PWTKNPVGL--QLLAVYGFIRSIDDLYFTVSDPTLIEILKLPVLSIVHSAIIEAIMLIKLSLGSESSQFEDLN-PSFL 643 (2105)
T ss_pred --hhHhcchhh--HHHHHhccccccchhhhhhhhHHHHHHhhhHHhhcccCchHHHHHHHHHHHHhhhccccccC-chHH
Confidence 000000010 00001111356778888888889999999998877776679999999999999999999888 9999
Q ss_pred HHHhcCCcchhHHHHHH-HHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhcc
Q 000194 906 HTVRTCDDYLKDYITWK-LGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTH 984 (1880)
Q Consensus 906 ~~l~~~~~~~~~~~~~~-l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~y 984 (1880)
....+......+..+++ +..++.++.++++.++..+......+|.... -.+..++..++.+...+..+++.+
T Consensus 644 ~i~~n~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~e~~~~ 716 (2105)
T COG5032 644 YIFSNNSISDILFYFQNFLELIVIAFFPLIRSEIIGIVLISSLFSKTWI-------LLKLLLIAFISKLISALQGELKML 716 (2105)
T ss_pred HHHHhccHhHHHHHHHHHHHHHHHhhccchHHHHHhHHHHHHHHHHhhh-------hhHhhHHHHHHHHHHHhccchhhh
Confidence 99888876666666665 8888889999999999888877776666311 012234567888887777789889
Q ss_pred chhhHHHHHHhcccc-cccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHH-HHhhcccccc
Q 000194 985 LPVILPCCIQVLSDA-ERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIET-LTRLIPRVQV 1062 (1880)
Q Consensus 985 l~~l~p~ll~~l~~~-~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~-l~~l~~~~~~ 1062 (1880)
.+.++...+.....- +...+......++..+..++..++.+++.++|.+.++.+.... .....+.-+ ++.++...++
T Consensus 717 ~~~~~~~~~~l~~~~~~~~~s~~~~~~i~~~~~~~~~~l~~~~~~~l~~i~~~~e~~~~-~l~~~~~i~~~~~f~~~~n~ 795 (2105)
T COG5032 717 APTLFTLFLVLVERYLDVEYSSVSFKLLLVILVYFGGNLESLVLLILDLIVMLVEYTEL-GLQESIFIERLSQFFKFKNL 795 (2105)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHhhhhcc-ccHHHhHHHHHHHHHHhhhh
Confidence 888888887776521 1111111223455666778888899999999988888865422 333444433 6777777888
Q ss_pred cchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcccccc-chhHHHHHH-HhCCCCchhHHHHHHHHhcCCCcccC
Q 000194 1063 TGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTI-FIPSIHKLL-LKHRLRHKEFEEIEGRLRRREPLILG 1140 (1880)
Q Consensus 1063 ~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~-fip~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1140 (1880)
..+++++++++.+.+... ..++...++.++.+..+.+.++.. |+|.+...+ ...++.|+.|..++++-.++++++..
T Consensus 796 ~~~~~~l~~~l~~~l~~~-~~l~~~~~~~~~~l~~~~~~~~~~~fi~~~~~~l~~~~~~~~~~l~~l~~~~~k~~~~~~~ 874 (2105)
T COG5032 796 SENASRLLPPLMDNLSKS-HELRCVSEDDVSALLIQLLTDRVICFIPVINSSLGDSRRIFLSLLAQLLDDSLKEESLPYN 874 (2105)
T ss_pred HHHHHHHHHHHHHHHhhh-HHHHhhhHhhHHHHHHHHhhhhhhhhhhhHHHhhHHHHHHHHHHHHHHhhcccccccchhh
Confidence 899999999999999877 889999999999999999999998 999887777 56667788888888888777766542
Q ss_pred chhHhhhhccCCccccCCCCCCCCCCCCCCCchhhh--------hccccccCCCCChhhHHHHHHHHHHHHHhcCCCHHH
Q 000194 1141 STAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQK--------QLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPAL 1212 (1880)
Q Consensus 1141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~w~~W~~~~~~~ll~~sps~~i 1212 (1880)
..-. ..... .+. . ...+...+... ....|..++..+++.|++|..++.++++++.|+.++
T Consensus 875 l~~~------~~~~~--~~~--~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~l 942 (2105)
T COG5032 875 LNVD------RGTDL--REF--F--QTVKSKAEVLSMLPFVQSILFEAWNRVDFLLKDFWQEELDNLLVALLKELPFMAL 942 (2105)
T ss_pred ccee------eceec--ccc--c--cChHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHhccchHHh
Confidence 1100 00000 000 0 00000000001 001122556789999999999999999999999999
Q ss_pred HHHHHHHhhChhhHHHhHhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCChHHHHHHH---HHHHHhhhCCCCCCCCHH
Q 000194 1213 RTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLL---NLAEFMEHDEKPLPIDIR 1289 (1880)
Q Consensus 1213 r~c~~la~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~p~~i~q~ll---~l~efm~~~~~~l~i~~~ 1289 (1880)
+.|+.++..+.++++++|+..+..||.++....++.+...+..++..+..|+.+.+..+ |+.||++|..+.++++..
T Consensus 943 ~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~ 1022 (2105)
T COG5032 943 RDCSILSDLYFMLGRELWNSVSFECWLELMNSYKRLLIKSLKSKLHLPTIPILILQMLLDSKNLTEFTEHQLKNLPLPSL 1022 (2105)
T ss_pred hhcchhHHHHhhccHHHHhHHhHHHHHHHhhhhhHHHHHhHHHHhhcCCCCchhhhhhhhhcchhhhhhhhhheecchhh
Confidence 99999999899999999999999999999988999999999999999999999999999 999999999999999888
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcC
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQR 1369 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~ 1369 (1880)
..+.....|+.+++++|+.|.++-.. .....++.+++++..+++.|...|+..........++++.|++.+++
T Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1095 (2105)
T COG5032 1023 SIGFYESLCSFLAKLLHDEELYFFPL-------LFVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYLQR 1095 (2105)
T ss_pred hhhHHHHHHHHHHHHhHHHHHHhccc-------chHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhhhHHHHHHHHH
Confidence 88899999999999999999988532 12478899999999999999999977665555556667899999999
Q ss_pred HHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHH
Q 000194 1370 WDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEY 1449 (1880)
Q Consensus 1370 W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~ 1449 (1880)
|.+++..|....... . ...+...+.+++....+.|+....+++..|-......|.-..+.++.++|..|.|+....+
T Consensus 1096 ~~~~l~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~ 1172 (2105)
T COG5032 1096 WYEALNRYFELLSKG-D--RLFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRRRKLLETLVATAYEQVGEWYKAQQL 1172 (2105)
T ss_pred HHHHHHHHHHHHhhc-c--chhHHHHhhhhhhhHHHHHHHHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHhHHHHHHH
Confidence 999999998877543 1 2245678999999999999998888876553333333455677899999999999999999
Q ss_pred HhhcCCCC-cchhhccccccccCCCCCchHHHHHHHHHHh-c---------ChhhhHHHHHHHHHHhHhhhhHHHHHH--
Q 000194 1450 VSRLDDGD-ESKLRGLGNTAANGDGSSNGTFFRAVLLVRR-G---------KVLESYERAYSNMVRVQQLSELEEVID-- 1516 (1880)
Q Consensus 1450 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~-~---------~~~esy~ray~~l~~lq~L~ELeE~i~-- 1516 (1880)
.+.+.... ....... ...... ...+...-..+..+.. . ...++|.+++-...+.+...|++|++.
T Consensus 1173 ~e~~~~k~~~~~~~~s-~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~ 1250 (2105)
T COG5032 1173 YEVAQRKARSKEFPFS-LQYLYW-HINDIDCADKLQSVLAELSLVTGISELLLEESWRRALFSNIKDSLESELEEIIDGM 1250 (2105)
T ss_pred HHHHhhhcccccCchh-hHHHHH-cccchhhHhhhhhhhhhcccccchhhhccchhHHHHHhhhHHhhhhhhhhHHhhhh
Confidence 88764321 0000000 000000 0000111111111111 0 146789999999999999999999998
Q ss_pred hhcCCCCCCchhhH--HHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcC-ChhHHHH
Q 000194 1517 YCTLPVGNPVAEGR--RAIIRNMWTERIQG---TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSG-RISQARS 1590 (1880)
Q Consensus 1517 ~~~~~~~~~~~~~~--~~~l~~~W~~Rl~~---~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g-~~~~a~~ 1590 (1880)
+++.... ... ...+.+.|..++.+ +...+..|..+...+..+..+.+..+.|++|++.|++.+ +..+...
T Consensus 1251 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1326 (2105)
T COG5032 1251 YKSNEDF----GALMLLSLSAELWDKILEGRSSCSKSIKLSLNIWLDLSIVVSPKDEPELFIKFVELCEASSIRSKLLEK 1326 (2105)
T ss_pred hhcccch----HHHHHHHHHHhccchhhcchhhhhHHHHHHHHHHHHHhhhcCHhhhhhHHHHHHHHHhhhhHHHHhcch
Confidence 4443211 222 34566799999999 999999999999999999988776789999999999999 7777777
Q ss_pred HHHHHhcCCC-CCCcccc-cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc----ccccccc--
Q 000194 1591 TLVKLLQYDP-ETSHENV-RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA----ASTSLTT-- 1662 (1880)
Q Consensus 1591 ~L~~l~~~~~-~~~~~~~-~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~----~~~~~~~-- 1662 (1880)
.+..+.+-.. ...+.+. ....+|.+.+...+..|.... +..+......+...+....+.++. ...+...
T Consensus 1327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1403 (2105)
T COG5032 1327 NIQELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWR---QNAFLRINPELLPLLSSLLNLQSSSLSKQLVSRGSSE 1403 (2105)
T ss_pred hHHHHHhccccccchhhhhhhcCCCCchhhhhhhhhhHHH---Hhhhhhhchhhccccchhhhccchhccccccccchhh
Confidence 7766654321 1111111 122346777888888887763 222333333322111110000000 0000000
Q ss_pred ---ccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH-HHHHHHHHHHhhhccCC----
Q 000194 1663 ---ATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS-WALFNTAVMSHYTLRGL---- 1734 (1880)
Q Consensus 1663 ---~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~-wA~~n~~~~~~~~~~~~---- 1734 (1880)
......+...++....+.|......+....+...+...|..+..+...|+++|+. |+..|.+.+.+......
T Consensus 1404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1483 (2105)
T COG5032 1404 SAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLCRLGRRELKAGLNVWNLTNLELFSDIQESEFFEWG 1483 (2105)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 0001123344555555778776654444566777888899999999899999999 99998887765322110
Q ss_pred CCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhh-HHHHHHHHHHhcc
Q 000194 1735 PSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT-WLVVLPQIIARIH 1813 (1880)
Q Consensus 1735 ~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~-wl~~ipQLiaRi~ 1813 (1880)
......+..++++..+.++..+ +.-..++.+|...+|+..|....+.++...+........ |+.++||+..+++
T Consensus 1484 ~~~~~~~~~~~~~~~~~s~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1558 (2105)
T COG5032 1484 KNLKLLSIIPPIEEIFLSNALS-----CYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLS 1558 (2105)
T ss_pred hhhHHhccCCchhHHHHhhhcc-----chHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhhhh
Confidence 0112345567888888888774 456799999999999999997777777777777777666 9999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccccccccccc
Q 000194 1814 SNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQSCY 1877 (1880)
Q Consensus 1814 ~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R~~~a~~Il~~~~~~~~~lv~~a~~ 1877 (1880)
.........++.++.++|+.|||++.|+|.++.+|....+...+..+..+.+.|.|.+|.++..
T Consensus 1559 ~l~~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v~~~~~ 1622 (2105)
T COG5032 1559 SLSLLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLVKEALE 1622 (2105)
T ss_pred hcchhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhHhHHHh
Confidence 9888888999999999999999999999999999999999999999999999999999998854
No 4
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.5e-39 Score=430.99 Aligned_cols=562 Identities=19% Similarity=0.292 Sum_probs=430.8
Q ss_pred CHHHHHHHHHHhhChhhHHHhHhHHHHHHHHhhcHHHHHHHHHHHHHHhCCC------CCChHHHHHHHHHHHHhhhCCC
Q 000194 1209 SPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSP------NIPPEILATLLNLAEFMEHDEK 1282 (1880)
Q Consensus 1209 s~~ir~c~~la~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~------~~p~~i~q~ll~l~efm~~~~~ 1282 (1880)
+..+-+..+++..++..|..+|...|...|..++++++..+++.+...+++. +.-|.++.+++ |-+..+.+
T Consensus 2336 ~~~l~~l~~i~~~~~~~a~~~w~~~Fp~~w~~l~~de~~~~~~~~i~flS~~~h~~q~~~~pnvln~~v---~s~~~~~~ 2412 (3550)
T KOG0889|consen 2336 ADFLDPLLQIQHHDDKVAEKLWVGLFPIVWSSLSKDEIRNLAGSIIPFLSSGYHIKQQGCRPNVLNALV---ESLVKIVP 2412 (3550)
T ss_pred HhhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCHhhhhcccchhccccccchhhhhhccchhHHHHHH---HHHHhhcc
Confidence 4567777888888999999999999999999999999999999999999885 23356666654 55667888
Q ss_pred CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHH
Q 000194 1283 PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKES 1362 (1880)
Q Consensus 1283 ~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~ 1362 (1880)
++++|+.++...+...|+|++++.++|.+..+. +.+......++.++|.+||..|++.|..+|+|+..... ..+..+.
T Consensus 2413 ~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~-~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~-~eT~~a~ 2490 (3550)
T KOG0889|consen 2413 PIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNK-EMENTKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKF-PETMVAL 2490 (3550)
T ss_pred CCCCCHHHHHHHhccchHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhcc-HHHHHHH
Confidence 899999999999999999999999999876543 11111234678899999999999999999999976654 4567788
Q ss_pred HHHHhcCHHHHHHHHHHHHhcc---CCCchhHH---hHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHH
Q 000194 1363 WYEKLQRWDDALKAYTNKASQA---SNPHIVLE---ATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANA 1436 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~---~~~~~~~~---~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~a 1436 (1880)
.||++|.|++|+..|++.+... .-|.+..| |...|++|...|.||+.+.++++..-. ..+..++
T Consensus 2491 s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~----------~~llle~ 2560 (3550)
T KOG0889|consen 2491 SYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGN----------YELLLEC 2560 (3550)
T ss_pred HHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----------ceeeeeh
Confidence 8999999999999999987532 11211122 568999999999999999999965321 1266799
Q ss_pred HHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC----------hhh-------------
Q 000194 1437 AWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK----------VLE------------- 1493 (1880)
Q Consensus 1437 aw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~----------~~e------------- 1493 (1880)
+||+.||+.+++........... .......+|+++.++++.. +.|
T Consensus 2561 aWrlsdw~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP 2628 (3550)
T KOG0889|consen 2561 AWRLSDWNDQKDALEQKAKSLSD------------VPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLP 2628 (3550)
T ss_pred hccCCcchhHHHHHHHhhhccCC------------CCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999877754332111 0133456777777665521 122
Q ss_pred --hHHHHHHHHHHhHhhhhHHHHHHhh-cCCCCC----CchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcC--
Q 000194 1494 --SYERAYSNMVRVQQLSELEEVIDYC-TLPVGN----PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP-- 1564 (1880)
Q Consensus 1494 --sy~ray~~l~~lq~L~ELeE~i~~~-~~~~~~----~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~-- 1564 (1880)
++...++.+..+|++.|++|..++. ....++ ...-...+.+.++|++|+++.++|++.|.++++||+.+++
T Consensus 2629 ~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I 2708 (3550)
T KOG0889|consen 2629 ERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMI 2708 (3550)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 2233478999999999999998855 333332 1112446778999999999999999999999999998864
Q ss_pred -----C------------------cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHH
Q 000194 1565 -----P------------------TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLK 1621 (1880)
Q Consensus 1565 -----~------------------~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak 1621 (1880)
+ ++.++.-++||+.|||+|-.+.|.+.|.++.+... -.+..++.|
T Consensus 2709 ~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iytlp~------------veiqdaF~K 2776 (3550)
T KOG0889|consen 2709 NKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIYTLPN------------VEIQDAFQK 2776 (3550)
T ss_pred HHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhccCc------------chHHHHHHH
Confidence 2 12366778999999999999999999999876521 244555555
Q ss_pred HHHhcCCcchHHHHHHHHHHH---HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH
Q 000194 1622 YQWSLGEDLKRKEAFARLQTL---AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEII 1698 (1880)
Q Consensus 1622 ~lw~~g~~~~~~~Al~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~ 1698 (1880)
+- +++..+++.- ...++...+ ++. ..-..+..|..+.+.|.++.+++. .++..
T Consensus 2777 ~r---------eq~~c~l~~~~e~~~gLevi~s----TNl-----~yF~~~q~aeff~lkG~f~~kL~~------~eeAn 2832 (3550)
T KOG0889|consen 2777 LR---------EQAKCYLQNKNELKTGLEVIES----TNL-----MYFSDRQKAEFFTLKGMFLEKLGK------FEEAN 2832 (3550)
T ss_pred HH---------HHHHHHhcChHHHHHHHHHHhc----ccH-----HHHhhHHHHHHHHhhhHHHHHhcC------cchhH
Confidence 53 2333333321 111111000 000 112356789999999999999853 47889
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh
Q 000194 1699 AAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN 1778 (1880)
Q Consensus 1699 ~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~ 1778 (1880)
+.|..|++++....|+|..||.|++..++... ....++.+||.||++++.+.+ .+.++..+.|+|+|.=-
T Consensus 2833 ~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~------~ni~~a~~avsCyLqA~~~~~----~skaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2833 KAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEP------VNISFACNAVSCYLQAARLYN----SSKARKLIAKVLWLLSF 2902 (3550)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC------cccHHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999986431 124799999999999999864 35578888999888866
Q ss_pred cCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHh
Q 000194 1779 HGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVAC 1846 (1880)
Q Consensus 1779 ~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~ 1846 (1880)
+.+...+.+++.+.+..||+|.|+.|||||+.-+.+.+ ...+..+|.+|++.||||+.||+..+.
T Consensus 2903 dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e---~~~~~~iL~kia~~yPQal~f~lRta~ 2967 (3550)
T KOG0889|consen 2903 DDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKE---AKLVRLILIKIAKSYPQALYFPLRTAR 2967 (3550)
T ss_pred ccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccc---hhHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 66666889999999999999999999999999999988 467889999999999999999998764
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-41 Score=423.36 Aligned_cols=679 Identities=17% Similarity=0.170 Sum_probs=499.7
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChh--hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcc
Q 000194 43 ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAA--ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120 (1880)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~--~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~ 120 (1880)
|...|..+. ++.+..+..++.++.++.+...+.+++++.+ .|..|+-.|-++.+. .+.+.++..+|+..+++
T Consensus 223 a~~~l~~l~--El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~----Ap~~~k~~~~~~~~lv~ 296 (1075)
T KOG2171|consen 223 AKSALEALI--ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEY----APAMCKKLALLGHTLVP 296 (1075)
T ss_pred HHHHHHHHH--HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHh----hHHHhhhchhhhccHHH
Confidence 333344444 5568888889999999999888888876654 444444444444433 55666666776666665
Q ss_pred c--------CCC--------------hHHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHhhhc---CCCcchhHHHHH
Q 000194 121 V--------KRD--------------REILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAV 174 (1880)
Q Consensus 121 ~--------~~d--------------~~v~~~aa~~l~~L~~~-~g~~~~~~v~~~~~~~~~~l~---~~~~~~~R~aA~ 174 (1880)
. ..| ......|.++++|++.+ ||... ++.+++|+. ...+|..|+||+
T Consensus 297 ~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v-------~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 297 VLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV-------LPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred HHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe-------hHHHHHHHHHHhcCCCHHHHHHHH
Confidence 2 111 23678899999999997 43332 344445543 567889999999
Q ss_pred HHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCC-
Q 000194 175 LILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP- 253 (1880)
Q Consensus 175 ~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~- 253 (1880)
++|+.+++||++.|.+.+++|++.++++|.||||+||.||++|++++.+.+. +..+++++..+.+.+...+.++..
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~---p~iqk~~~e~l~~aL~~~ld~~~~~ 446 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ---PEIQKKHHERLPPALIALLDSTQNV 446 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc---HHHHHHHHHhccHHHHHHhcccCch
Confidence 9999999999999999999999999999999999999999999999987655 446677788888888888877643
Q ss_pred hhHHHHHHHHHHHHHHcchhhhHHHHHHHHH-HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhh
Q 000194 254 VHSIHGSLLAVGELLRNTGEFMMSRYREVAE-IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVL 332 (1880)
Q Consensus 254 ~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~-~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L 332 (1880)
+...|+|..+++...++.++.+.||++.+++ .+...++++.+.||+.++++|+++|..+.+.|.+ |++.+||+|..+|
T Consensus 447 rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p-Y~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP-YFDRLMPLLKNFL 525 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh-HHHHHHHHHHHHH
Confidence 6678888888888888999999999999999 6667778899999999999999999999999986 8899999999999
Q ss_pred cCCC------CcchHHHHHHHHHhhchh-hhhhhhhHHHHHHHHh---hcCCCCCCCchHHHHHHHHHHHhCCCchHHHH
Q 000194 333 RIPA------ERDSGFIALGEMAGALDG-ELFHYLPTITSHLREA---IAPRRGKPSLEALACVGNIARAMGPVMEPHVR 402 (1880)
Q Consensus 333 ~~~~------~r~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~---l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~ 402 (1880)
.+.+ .|+..++|+|.++.+||+ .|.|+..++|+.+... ..+.+...+.+.+.+|+++|+.+|++|.||++
T Consensus 526 ~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~ 605 (1075)
T KOG2171|consen 526 QNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLP 605 (1075)
T ss_pred hCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHH
Confidence 8754 268899999999999996 5778888888877665 33333333567899999999999999999999
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCch
Q 000194 403 GLLDIMFSA-GLSTTLVDALEQITV-SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480 (1880)
Q Consensus 403 ~ll~~l~~~-~ls~~l~~~l~~i~~-~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1880)
.+||+++.+ .+.++..-. ...+. ....+. . ++.+. +.++. ...+ .+. ...
T Consensus 606 ~Vmppl~~ta~~~p~~~~~-d~~d~e~~~~~~-~-----~e~~~--~~~~e--------------~~~I--~Ts---vl~ 657 (1075)
T KOG2171|consen 606 VVMPPLLKTARLDPDVALS-DEEDEEEEQDLD-G-----WEVVE--LGDKE--------------NIGI--RTS---VLD 657 (1075)
T ss_pred HHhHHHHHhhccCCcccCc-Cchhhhhccccc-c-----chhhc--cCCce--------------eeee--eeh---hHH
Confidence 999999975 233322100 00000 000000 0 00000 00000 0000 011 112
Q ss_pred hHHHHHHhhccccc-CCCcchhhHHHHHh---h-hccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchh
Q 000194 481 PVQLALQTLARFNF-KGHDLLEFARDSVV---L-YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRR 555 (1880)
Q Consensus 481 ~~~~Al~~L~~~~~-~~~~l~~~v~~~~~---~-~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (1880)
+++.|+++|++|.- .+..|.||+.+++. + +..+.|++||++|+.+++.++.+....+. + + .....
T Consensus 658 eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~--~---~-----p~~l~ 727 (1075)
T KOG2171|consen 658 EKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQ--G---G-----PEYLK 727 (1075)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc--c---C-----hHHHH
Confidence 45789999999943 24567788887643 3 34467999999999998888765543220 0 0 11367
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHhccCC-CCc------chhhccH--hhHHHHHH---HhC---------CCC--
Q 000194 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGN-RGF------DDFLAQA--DCLSAIFA---ALN---------DED-- 612 (1880)
Q Consensus 556 ~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~f------d~~L~~~--~~l~~L~~---~l~---------D~~-- 612 (1880)
+++..+.+.++.+...+|+++|-.+++++|+.+ ..+ +++...- .+...+.. ..+ |.+
T Consensus 728 ~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~ 807 (1075)
T KOG2171|consen 728 QLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIE 807 (1075)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence 889999999999999999999999999998631 111 1111100 00111110 000 111
Q ss_pred ---------HhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHH
Q 000194 613 ---------FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1880)
Q Consensus 613 ---------~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1880)
..+-..+.+++..+++...+.+.|.+..+....+..+..+ .... |+.|.++++++++.+++...+|.+.
T Consensus 808 eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~-~~~~-r~~av~~~~d~ie~~~~a~~~~~~~ 885 (1075)
T KOG2171|consen 808 EEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSK-KTVA-RQWAVCIFDDLIEGCGEASAKYKER 885 (1075)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcC-CcHH-HHHHHHHHHHHHHhcccccchHHHH
Confidence 1234567788888999999999999999888877777766 4555 9999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCc-----hhhHHHHHHHHHHHH
Q 000194 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA-----VTKREVAVSTLGQVV 758 (1880)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~-----~~~r~~Al~~Lg~l~ 758 (1880)
+++.++..+.+. +++|++++.+++|.+++.+|...++.+...+|.+...++.... ...+++|+.++++++
T Consensus 886 ~~p~~~~~~~d~-----~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~ 960 (1075)
T KOG2171|consen 886 FLPLVLEALQDS-----DPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKIL 960 (1075)
T ss_pred HHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHH
Confidence 999999999985 8999999999999999999999999999999999999875422 234589999999999
Q ss_pred hhcCcccccCCcchHHHHHHHHHhcCCCC
Q 000194 759 QSTGYVITPYNEYPQLLGLLLKMLNGELV 787 (1880)
Q Consensus 759 ~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~ 787 (1880)
.+....+ | ++++++.++..|-..++
T Consensus 961 ~~~~~~i-~---vdqvl~~~l~~LPl~~D 985 (1075)
T KOG2171|consen 961 LFNPNRI-P---VDQVLPAWLSWLPLKED 985 (1075)
T ss_pred HhCCccC-c---HHHHHHHHHHhCCCccc
Confidence 8876653 2 46899999998854333
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-37 Score=359.54 Aligned_cols=619 Identities=17% Similarity=0.222 Sum_probs=470.9
Q ss_pred CCHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000194 21 GSLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1880)
Q Consensus 21 ~~~~~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~ 99 (1880)
+=|+++.++.+.|.++. +..++|..+|.+++|+.+..+..+...++++-+..++.++++++++..|.-|+.++|++|-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 44999999999999987 57888999999999999999999988999999999999999999999999999999999877
Q ss_pred ccCcchhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc---CCCcchhHHHHH
Q 000194 100 ALGENASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAV 174 (1880)
Q Consensus 100 ~~~~~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~---~~~~~~~R~aA~ 174 (1880)
. +.+...+...||..+|.. +.|++|++..|.+|..|.+. .++-+.+.+..++||+- .+.+++.-..|+
T Consensus 205 ~---~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev----r~dkl~phl~~IveyML~~tqd~dE~VALEAC 277 (885)
T KOG2023|consen 205 Q---TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV----RPDKLVPHLDNIVEYMLQRTQDVDENVALEAC 277 (885)
T ss_pred C---cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh----cHHhcccchHHHHHHHHHHccCcchhHHHHHH
Confidence 4 445666777888888864 55789999999999999886 33333344566666642 566778889999
Q ss_pred HHHHHHHhh--cCccchhchHHHHHHHHHHhcCCch--------------------------------------------
Q 000194 175 LILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTL-------------------------------------------- 208 (1880)
Q Consensus 175 ~~l~~la~~--~p~~l~~~l~~i~~~i~~~l~D~~~-------------------------------------------- 208 (1880)
.+|-.+|+. +++.+.||+++++|.++.+|+-.+.
T Consensus 278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDddd 357 (885)
T KOG2023|consen 278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDD 357 (885)
T ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccc
Confidence 999999998 6678999999999999999863321
Q ss_pred ------------hHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhH
Q 000194 209 ------------AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276 (1880)
Q Consensus 209 ------------~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~ 276 (1880)
.+|+..+.||..+..+ .+.+.+..++|-+...|.+. .|.+++++++|+|++++++.++|.
T Consensus 358 De~DDdD~~~dWNLRkCSAAaLDVLanv-------f~~elL~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~ 429 (885)
T KOG2023|consen 358 DEDDDDDAFSDWNLRKCSAAALDVLANV-------FGDELLPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFV 429 (885)
T ss_pred cccccccccccccHhhccHHHHHHHHHh-------hHHHHHHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcc
Confidence 2455555555544433 33456778888888888875 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC-CC-CcchHHHHHHHHHhhchh
Q 000194 277 SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI-PA-ERDSGFIALGEMAGALDG 354 (1880)
Q Consensus 277 ~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~-~~-~r~~a~~alg~la~~v~~ 354 (1880)
||++++++.++.+++++.+.||...|+++++.+.|.-.+=...|+.++|..++..+-+ .+ ...+|..+++.+-+..|+
T Consensus 430 p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998765433446888888888776543 33 347999999999999999
Q ss_pred hhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCch--HHHHHHHHHHHhc-C-CCHH------HHHHHHHH
Q 000194 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVME--PHVRGLLDIMFSA-G-LSTT------LVDALEQI 424 (1880)
Q Consensus 355 ~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~--~~l~~ll~~l~~~-~-ls~~------l~~~l~~i 424 (1880)
++.||+..|++.+.-+++....+.-.-.+.++|.+|..+|..+. .|++-+||+|++. . ++++ +.+|+..+
T Consensus 510 eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsi 589 (885)
T KOG2023|consen 510 ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSI 589 (885)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 99999999999999999877666666789999999999999764 3899999998852 2 2222 22333332
Q ss_pred HHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH
Q 000194 425 TVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR 504 (1880)
Q Consensus 425 ~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~ 504 (1880)
+. || |..|.||..
T Consensus 590 a~----------------------------------------------------------AL---------~~gF~P~~~ 602 (885)
T KOG2023|consen 590 AS----------------------------------------------------------AL---------GVGFLPYAQ 602 (885)
T ss_pred HH----------------------------------------------------------HH---------hccccccCH
Confidence 21 21 112223322
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
++...-++ -++ .|.++..+...........+... -.+..+++.+.+ .
T Consensus 603 ~Vy~Rc~~----il~-----~t~q~~~~~~~~~~~~~pdkdfi----I~sLDL~SGLae--------------------g 649 (885)
T KOG2023|consen 603 PVYQRCFR----ILQ-----KTLQLLAKVQQDPTVEAPDKDFI----IVSLDLLSGLAE--------------------G 649 (885)
T ss_pred HHHHHHHH----HHH-----HHHHHHHhccCCccccCCCcceE----EEeHHHHhHHHH--------------------H
Confidence 22111000 000 01111111100000000000000 002333443333 2
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
|+ ....+.+++..++..++.|+.|+.++||++++.++|.+++.++..|.|.+..++.-+...+.. .....-.+|+|
T Consensus 650 Lg--~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~--~~isv~nNA~W 725 (885)
T KOG2023|consen 650 LG--SHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNP--ENISVCNNAIW 725 (885)
T ss_pred hh--hchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCCh--hhchHHHHHHH
Confidence 32 234566677788999999999999999999999999999999999999998877655544322 23345678999
Q ss_pred HHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCch
Q 000194 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~ 744 (1880)
++|.++...+...+||+.+++..|+..++... ....+.++...|||.|+...++.++|+++.++..++..++.-.+.
T Consensus 726 AiGeia~k~g~~~~~~v~~vl~~L~~iin~~~---~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~Dn 802 (885)
T KOG2023|consen 726 AIGEIALKMGLKMKQYVSPVLEDLITIINRQN---TPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDN 802 (885)
T ss_pred HHHHHHHHhchhhhhHHHHHHHHHHHHhcccC---chHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999988653 467888999999999999999999999999999999999877778
Q ss_pred hhHHHHHHHHHHHHhhc
Q 000194 745 TKREVAVSTLGQVVQST 761 (1880)
Q Consensus 745 ~~r~~Al~~Lg~l~~~~ 761 (1880)
+.++.|..+++.++.-.
T Consensus 803 eEK~sAFrG~c~mi~vN 819 (885)
T KOG2023|consen 803 EEKESAFRGLCNMINVN 819 (885)
T ss_pred hhHHHHHHHHHHheeeC
Confidence 89999999999987654
No 7
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=1.4e-36 Score=376.08 Aligned_cols=311 Identities=36% Similarity=0.626 Sum_probs=251.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC-------------------
Q 000194 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK------------------- 1490 (1880)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~------------------- 1490 (1880)
||++++|||++|+||.+.++++..+.+ +.+..||+++.++++++
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~~~~-----------------~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l 63 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQSNED-----------------SPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDEL 63 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhccCC-----------------ChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999877642 33467888888877653
Q ss_pred ---hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcC---
Q 000194 1491 ---VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP--- 1564 (1880)
Q Consensus 1491 ---~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~--- 1564 (1880)
..+||.|+|+.|+++|+|+||||++++......+ ....+.+.+.|++|++++++++++|++||++|+++++
T Consensus 64 ~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~---~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~ 140 (352)
T PF02259_consen 64 SALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQN---PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLIL 140 (352)
T ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999998432211 4567789999999999999999999999999999999
Q ss_pred -CcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1565 -PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1565 -~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
+.+..++|++|+++|||+|++++|.++|.++.++++..+. ..|.+.+|+||++|++|+ +.+|+..|+.++
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~------~~~~v~~e~akllw~~g~---~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES------LLPRVFLEYAKLLWAQGE---QEEAIQKLRELL 211 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC------CCcchHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 8899999999999999999999999999999876543211 268999999999999995 689999999988
Q ss_pred H-HhcCCCccc---ccc--------ccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1644 M-ELSSCPVIQ---SAA--------STSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1644 ~-~~~~~~~~~---~~~--------~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
. .+....... ... .........+..++.|++++++|+|..+++.....+..+++.+.|+.|++++|+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 7 333221000 000 0000011245578899999999999998721134578899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCC---CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1712 GKAWHSWALFNTAVMSHYTLRGLP---SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~---~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
+|+||+||.+|+++++........ +...+|+..||+||++|+.+| +++.++++|||||
T Consensus 292 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~-----~~~~~~~~~RlLt 352 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLG-----SKYVRQDLPRLLT 352 (352)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhC-----CCchHHHhhHhcC
Confidence 999999999999999876432110 246789999999999999986 6789999999996
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-29 Score=314.38 Aligned_cols=904 Identities=16% Similarity=0.189 Sum_probs=602.7
Q ss_pred HHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhhccc
Q 000194 23 LDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
..-+.+|++.|.|+.+++++ |-+.|...- +. +. +...+..+. +++++..|.-|...+..|+...
T Consensus 3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~----~~--~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~ 68 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNEVRRQAEEALETLA----KT--EP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKH 68 (1075)
T ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHHhh----cc--cc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 34588999999999887776 544333222 11 11 222333333 4566666655555555554432
Q ss_pred cCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCC-CchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHH
Q 000194 101 LGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGA-MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILK 178 (1880)
Q Consensus 101 ~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~-~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~ 178 (1880)
... +.....+.-.-|..++..-....|++.-|.++..+++.-.. .|++++++++.-+ .+.+...|..|+.+|.
T Consensus 69 w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-----~S~~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 69 WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQST-----KSPNPSLRESALLILS 143 (1075)
T ss_pred hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-----cCCCcchhHHHHHHHH
Confidence 111 22233344444444444456789999999999999986222 6888877766544 3566789999999999
Q ss_pred HHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH----hhccCCCCh
Q 000194 179 EMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ----DGLGRNAPV 254 (1880)
Q Consensus 179 ~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~----~~l~~~~~~ 254 (1880)
.+.+.-+..+.+|+..+.+.+.++|.||+..||-+|..|++.+...+. .+. ...+.+..++|.++ ..+... +.
T Consensus 144 s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~-~~~-~~~~~~~~llP~~l~vl~~~i~~~-d~ 220 (1075)
T KOG2171|consen 144 SLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE-NNK-SEVDKFRDLLPSLLNVLQEVIQDG-DD 220 (1075)
T ss_pred hhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc-cch-HHHHHHHHHhHHHHHHhHhhhhcc-ch
Confidence 999999999999999999999999999998899999999999988764 111 12223444455444 434443 34
Q ss_pred hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhHhHhhhChhhHH--HHHHHHHHHHHHH
Q 000194 255 HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEH--RDRLVRLSITSLLPRIAHFLRDRFV--TNYLKICMNHILT 330 (1880)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~--~~~~Vr~~~~~~i~~la~~~~~~f~--~~yl~~~~~~Ll~ 330 (1880)
+....++.+|.++++..+.++.+++.++++..+....+ -+..+|..++..|-.+++++|..-- ..|.+++++.++.
T Consensus 221 ~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~ 300 (1075)
T KOG2171|consen 221 DAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLA 300 (1075)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHH
Confidence 66788888999999999999999999999988887765 4788999999999999999775421 2477888888887
Q ss_pred hhcCCC------------------CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 331 VLRIPA------------------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 331 ~L~~~~------------------~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.+.... ....|.++|..+|..+|.. ..+|.+++.+...++..+-+.+.+++.+++.+++.
T Consensus 301 ~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~--~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG 378 (1075)
T KOG2171|consen 301 MMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK--QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG 378 (1075)
T ss_pred hcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh--hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 764211 0236777777777777652 34566777777777554434445667777766665
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000194 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1880)
Q Consensus 393 ~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1880)
.++.+.+.++.
T Consensus 379 c~~~m~~~l~~--------------------------------------------------------------------- 389 (1075)
T KOG2171|consen 379 CSDVMIGNLPK--------------------------------------------------------------------- 389 (1075)
T ss_pred cHHHHHHHHHH---------------------------------------------------------------------
Confidence 43322222222
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCcccccccc
Q 000194 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1880)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1880)
+-+.+++++.|+|+.||.||..+++++-.... +
T Consensus 390 ------------------------------Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-----------------p 422 (1075)
T KOG2171|consen 390 ------------------------------ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-----------------P 422 (1075)
T ss_pred ------------------------------HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-----------------H
Confidence 23345577888899999998888887643111 0
Q ss_pred chhHHHHHHHHHHHHHHhcCCC-hhHHHHHHHhcc----C--CCCcchhhccHhhHH-HHHHHhCCCCHhHHHHHHHHHH
Q 000194 553 KRRRLIEELVEKLLIAAVADAD-VTVRHSIFSSLY----G--NRGFDDFLAQADCLS-AIFAALNDEDFDVREYAISVAG 624 (1880)
Q Consensus 553 ~~~~~~~~vl~~Ll~~~~~d~~-~~vR~~~l~~l~----~--~~~fd~~L~~~~~l~-~L~~~l~D~~~~VR~~a~~~l~ 624 (1880)
...+...+.+..++.....++. ++|...+..++- + ...+.+|| +.++. .+..+++...+.||+.++..||
T Consensus 423 ~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 423 EIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 1222334444433333334443 455554444431 1 12345666 35566 4555666778899999999999
Q ss_pred hhhcCCcccccHHHHHHHHHHHHHHhcCCCCh---HhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCC
Q 000194 625 RLSEKNPAYVLPALRRHLIQLLTYLEQSSADN---KCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINA 700 (1880)
Q Consensus 625 ~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~---~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~ 700 (1880)
..+......+.||+..+|..+...+++. ++. ..|....++++.++.+.+ +.+.|+...+++.++....+. .+.
T Consensus 501 svA~AA~~~F~pY~d~~Mp~L~~~L~n~-~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~--~~~ 577 (1075)
T KOG2171|consen 501 SVADAAQEKFIPYFDRLMPLLKNFLQNA-DDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSD--QDD 577 (1075)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHHHHhCC-CchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccc--hhh
Confidence 9999888889999998887777777765 322 345567788888888876 789999999999998875222 122
Q ss_pred ChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhc--------CC---------------------------chh
Q 000194 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD--------GA---------------------------AVT 745 (1880)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d--------~~---------------------------~~~ 745 (1880)
+...++..+...+.+++..|++|.||++.+||.+++..+- +. -.+
T Consensus 578 dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~ 657 (1075)
T KOG2171|consen 578 DDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLD 657 (1075)
T ss_pred ccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHH
Confidence 4556677788899999999999999999999999997631 10 013
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccccccc
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1880)
.++.|...|+.++..++..+.||.. ++++..+..++-..+..||.+++.+++.+-.- . ++...+.|
T Consensus 658 eK~~A~~~Lv~~a~~lk~~F~pYve--~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~--~-~~A~~~~p--------- 723 (1075)
T KOG2171|consen 658 EKETACEALGEYAKELKEAFAPYVE--QVVELMVPLLKFYFHDGVRKAAAESMPQLLTC--A-LKACQGGP--------- 723 (1075)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--H-HHHhccCh---------
Confidence 5678999999999999999999975 67776666666667889999999998875310 0 00000000
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCC--CCcchhhHH
Q 000194 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV--PYLPKVLPD 903 (1880)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~--~~l~~iip~ 903 (1880)
. ....+ -..+.+.++..+.++...+....+.+++...++.+|+.|. +++..++-.
T Consensus 724 ---------~---~l~~l-----------~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~ 780 (1075)
T KOG2171|consen 724 ---------E---YLKQL-----------WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG 780 (1075)
T ss_pred ---------H---HHHHH-----------HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence 0 00011 1356778888887776667777889999999999998763 466665555
Q ss_pred HHHHHh----cCC-----------c-----chh---HHHH----HHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCc
Q 000194 904 LFHTVR----TCD-----------D-----YLK---DYIT----WKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPA 956 (1880)
Q Consensus 904 ll~~l~----~~~-----------~-----~~~---~~~~----~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~ 956 (1880)
+...+. ... + .+. .+++ ..+..++...+.++.|+++.+.+.+..+|......
T Consensus 781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~- 859 (1075)
T KOG2171|consen 781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTV- 859 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcH-
Confidence 544332 110 0 011 1223 23344444557789999999999999999866421
Q ss_pred ccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHh-cchhhhhhhhHHHHHH
Q 000194 957 TNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFG-GTLDEHMHLLLPALIR 1035 (1880)
Q Consensus 957 ~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g-~~~~~~~~~ilp~l~~ 1035 (1880)
. ++ -.+.+++.+..-.++.-.+|...++|.++..+.+.+-..++..+.. +..+..+| ....+.+...+|.+..
T Consensus 860 ---~-r~-~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYG-iGvlaq~~g~~y~~v~~~~l~~L~~ 933 (1075)
T KOG2171|consen 860 ---A-RQ-WAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYG-MGVLAQFGGEDYAPVCSEALPLLVQ 933 (1075)
T ss_pred ---H-HH-HHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHcCcchHHHHHHHHHHHHH
Confidence 1 22 5677888888888899999999999999999987542222222222 22233333 3334445556777777
Q ss_pred hhcCC-----CcHHHHHHHHHHHHhhcccc-cccchhHhHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHhcccccc---
Q 000194 1036 LFKVD-----APVDIRRAAIETLTRLIPRV-QVTGHISSLVHHLKLVLDGK-NDELRKDAVDALCCLAHALGEDFTI--- 1105 (1880)
Q Consensus 1036 ~l~~~-----~~~~vr~~ai~~l~~l~~~~-~~~~~~~~ii~~l~~~l~~~-~~~l~~~al~~L~~l~~~~g~~f~~--- 1105 (1880)
.+... ........|+.++++++... +-.+ ++..++.++..|... +.+--....+.||.|..+-......
T Consensus 934 ~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~-vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n 1012 (1075)
T KOG2171|consen 934 VLQPPLARTEENRRATENAIGAIAKILLFNPNRIP-VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNN 1012 (1075)
T ss_pred HHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc-HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCc
Confidence 77543 34456778888888887763 3344 778888887777643 4567788899999998875544433
Q ss_pred -chhHHHHHHHh
Q 000194 1106 -FIPSIHKLLLK 1116 (1880)
Q Consensus 1106 -fip~i~~~l~~ 1116 (1880)
.+|.|..++..
T Consensus 1013 ~~ip~i~~v~~~ 1024 (1075)
T KOG2171|consen 1013 QNIPKILSVCAE 1024 (1075)
T ss_pred ccchHHHHHHHh
Confidence 55666655544
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-29 Score=298.17 Aligned_cols=751 Identities=17% Similarity=0.223 Sum_probs=498.8
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHH-----------HHHhhcc
Q 000194 52 EEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSN-----------YMRTVFE 120 (1880)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~-----------~L~~~l~ 120 (1880)
+..+.++..++|.+|+..+..-+.+ -++++..+..+|+...|.|...+.........||.. ++.+.+.
T Consensus 22 e~~l~~~~~~nf~~F~~~Ls~vl~n-~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~ 100 (859)
T KOG1241|consen 22 EKQLEQAQSQNFPQFLVLLSEVLAN-DNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLG 100 (859)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-cCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 3456677788899998777652222 234566677889999999998875445666777763 5555553
Q ss_pred cCCChHHHHHHHHHHHHHhhh--CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHHHH
Q 000194 121 VKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVD 197 (1880)
Q Consensus 121 ~~~d~~v~~~aa~~l~~L~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~-~p~~l~~~l~~i~~ 197 (1880)
+.++.....|+++++.+|.. +.+.|+++++..+.++-+ +.....|.+++.+++++++. .|..+..+.+.++.
T Consensus 101 -~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~----~~~~~~k~~slealGyice~i~pevl~~~sN~iLt 175 (859)
T KOG1241|consen 101 -SPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE----EQASMVKESSLEALGYICEDIDPEVLEQQSNDILT 175 (859)
T ss_pred -CCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc----ccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHH
Confidence 56788999999999999874 778899998887777643 34447899999999999998 77899999999999
Q ss_pred HHHHHhc--CCchhHHHHHHHHHHHHHHHHhh-hch-hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000194 198 AIWVALR--DPTLAVRERAVEALRACLRVIEK-RET-RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1880)
Q Consensus 198 ~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~-r~~-~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1880)
.|..+++ .|+..||-||..||-.++++... .+. ..++.+++.+++.+ .++ +.+++++|+.+|..+....-+
T Consensus 176 aIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat----q~~-d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 176 AIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT----QSP-DEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred HHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc----cCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 78899999999999999998873 221 13444445544443 334 578999988888887776678
Q ss_pred hhHHHHHH-HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhc
Q 000194 274 FMMSRYRE-VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGAL 352 (1880)
Q Consensus 274 ~~~~~~~~-i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v 352 (1880)
||.+|+.+ ++..-+....+.++.|...+++-+..+++- ++ +-.+. +....+++..-..-. ++
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE---Ei-----D~~~e-~~e~~d~~~~p~~~~-----fa--- 313 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE---EI-----DLAIE-YGEAVDQGLPPSSKY-----FA--- 313 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH---HH-----HHHHH-HHHHhhcCCCchhhH-----HH---
Confidence 99999998 666666666788899998888888777642 11 00000 000001100000000 00
Q ss_pred hhhhhhhhhHHHHHHHHhhcCCCCC-------CCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000194 353 DGELFHYLPTITSHLREAIAPRRGK-------PSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQIT 425 (1880)
Q Consensus 353 ~~~~~p~l~~i~~~l~~~l~~~~~~-------~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~ 425 (1880)
..-++.+++.+.+.|.....+ +..++-.|+..+++.+|.++.|++ +
T Consensus 314 ----~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~V---l-------------------- 366 (859)
T KOG1241|consen 314 ----RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHV---L-------------------- 366 (859)
T ss_pred ----HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhh---H--------------------
Confidence 011234444555555321111 112455666666666665544422 2
Q ss_pred HhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHH
Q 000194 426 VSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARD 505 (1880)
Q Consensus 426 ~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~ 505 (1880)
||++
T Consensus 367 ---------------------------------------------------------------------------~Fie- 370 (859)
T KOG1241|consen 367 ---------------------------------------------------------------------------PFIE- 370 (859)
T ss_pred ---------------------------------------------------------------------------HHHH-
Confidence 2222
Q ss_pred HHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
..+.++++.-|.+|+.+.+.++.- |++.-+.
T Consensus 371 ---e~i~~pdwr~reaavmAFGSIl~g----------------------------------------p~~~~Lt------ 401 (859)
T KOG1241|consen 371 ---ENIQNPDWRNREAAVMAFGSILEG----------------------------------------PEPDKLT------ 401 (859)
T ss_pred ---HhcCCcchhhhhHHHHHHHhhhcC----------------------------------------Cchhhhh------
Confidence 124455666777777766554420 0000000
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH--HHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA--LRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 586 ~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~--l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
+.. +..++.+...+.|++.-||.++.+.+|++++++|..+.+. +...+.-++..+.+ .++...++|
T Consensus 402 -------~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D---ePrva~N~C 469 (859)
T KOG1241|consen 402 -------PIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND---EPRVASNVC 469 (859)
T ss_pred -------HHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh---CchHHHHHH
Confidence 000 1236667777889999999999999999999999765542 23333444555544 478888999
Q ss_pred HHHHHHHHhCcc---------cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHH
Q 000194 664 KLLGCLIRNCER---------LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734 (1880)
Q Consensus 664 ~~L~~l~~~~~~---------~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l 734 (1880)
|.+..|++++.+ ...||++.|+..|+..-...+ ...++++.++..+|+++.........|-+..+.+.+
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i 547 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 999999965322 344788999999988765432 136788999999999999998887777766666666
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 735 ~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
...|... +. +++...... ..+.+|-..|.+.| +.+-. | +
T Consensus 548 l~kl~q~---------i~--~~~l~~~dr-----~q~~eLQs~Lc~~L----------------q~i~r------k-~-- 586 (859)
T KOG1241|consen 548 LEKLDQT---------IS--SQILSLADR-----AQLNELQSLLCNTL----------------QSIIR------K-V-- 586 (859)
T ss_pred HHHHHHH---------HH--HHhccHhhH-----HHHHHHHHHHHHHH----------------HHHHH------H-c--
Confidence 6655321 11 111000000 00111222222221 11100 0 0
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCC
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV 894 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~ 894 (1880)
.. + -.-+.+.+|+.+++++..+.-...|..++-|+..+..++|..|.
T Consensus 587 -~~----------~----------------------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 587 -GS----------D----------------------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred -cc----------c----------------------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 00 0 00134788999999998754456789999999999999999999
Q ss_pred CCcchhhHHHHHHHhcCCcc-hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 895 PYLPKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 895 ~~l~~iip~ll~~l~~~~~~-~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
.|++.+.|-+...++++++. +-..+....|.+.+.++..|.||.+++|..+.+.++.+.++.. .+..++++++.|
T Consensus 634 kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~----vKP~IlS~FgDI 709 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRN----VKPAILSVFGDI 709 (859)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccccc----ccchHHHHHHHH
Confidence 99999999999999887665 3345567789999999999999999999999999987765432 345899999999
Q ss_pred HHHhhhhhhccchhhHHHHHHhccc-ccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHH
Q 000194 974 CLALNDEFRTHLPVILPCCIQVLSD-AERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIET 1052 (1880)
Q Consensus 974 ~~~l~~~f~~yl~~l~p~ll~~l~~-~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~ 1052 (1880)
+.++|.+|.+|+..++|.+...-+- .|.. + ....+|+ .++|+.++++
T Consensus 710 AlaIg~~F~~Yl~~vm~llq~as~~~~d~~-~---------------~~~~dYv----------------d~LRe~~lea 757 (859)
T KOG1241|consen 710 ALAIGADFEPYLEMVMPLLQQASSVQTDPA-D---------------DSMVDYV----------------DELREGILEA 757 (859)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCC-c---------------ccHHHHH----------------HHHHHHHHHH
Confidence 9999999999999999998765421 1110 0 0112222 3455555555
Q ss_pred HHhhccc-------ccccchhHhHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHhccccccc
Q 000194 1053 LTRLIPR-------VQVTGHISSLVHHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIF 1106 (1880)
Q Consensus 1053 l~~l~~~-------~~~~~~~~~ii~~l~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~f 1106 (1880)
...+..+ .-+.||++.|++.+-++-..++ ..+..+++..++.|+..+|++...|
T Consensus 758 y~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~ 820 (859)
T KOG1241|consen 758 YTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKL 820 (859)
T ss_pred HHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhh
Confidence 5444332 2356899999998888876554 4688999999999999999775433
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.96 E-value=8.1e-24 Score=241.52 Aligned_cols=691 Identities=16% Similarity=0.162 Sum_probs=437.2
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHhhh--cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHH-------HHH----hh
Q 000194 52 EEQARDLGGEAFSRFMDQLYDRISGLL--ESNDAAENLGALRAIDELIDVALGENASKVSKFSN-------YMR----TV 118 (1880)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~i~~l~--~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~-------~L~----~~ 118 (1880)
+.++.+++...|.+|+.-+.+ .++ ++.+.-+-.+|+...++|+.-++....+...||.. +++ +.
T Consensus 26 E~ql~~l~~~dF~qf~~ll~q---vl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~a 102 (858)
T COG5215 26 EAQLLELQSGDFEQFISLLVQ---VLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRA 102 (858)
T ss_pred HHHHHHhccccHHHHHHHHHH---HHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 457788999999999877776 344 34444456779999999988764434445556653 332 22
Q ss_pred cccCCChHHHHHHHHHHHHHhhh--CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHH
Q 000194 119 FEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEF 195 (1880)
Q Consensus 119 l~~~~d~~v~~~aa~~l~~L~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~-~p~~l~~~l~~i 195 (1880)
+. +.++.....|++.++.+|.- +.+.++++.+..+.++- ++..++.+.+++.+++++++. +|..+...-+.+
T Consensus 103 L~-s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg----~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~i 177 (858)
T COG5215 103 LK-SPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVG----DEQPVSGKCESLGICGYHCESEAPEDLIQMSNVI 177 (858)
T ss_pred hc-CCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhcc----ccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHH
Confidence 32 56789999999999999874 67789998887777663 466778899999999999998 676777777888
Q ss_pred HHHHHHHhc--CCchhHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc
Q 000194 196 VDAIWVALR--DPTLAVRERAVEALRACLRVIEKRE--TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT 271 (1880)
Q Consensus 196 ~~~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~ 271 (1880)
+-.|..+-+ .+...||-+|..||...+..++..- ...++.+++.+++.. ..+ +.+.+|++.-+|..+....
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat----q~~-d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT----QGN-DEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc----cCC-cHHHHHHHHHHHHHHHHHH
Confidence 877776553 7788999999999999776666421 124445555555443 333 5788999887887777666
Q ss_pred hhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhh----------Ch------hhHHHHHHHHHHHHHHHhhcC
Q 000194 272 GEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHF----------LR------DRFVTNYLKICMNHILTVLRI 334 (1880)
Q Consensus 272 ~~~~~~~~~~i~~~l-l~~~~~~~~~Vr~~~~~~i~~la~~----------~~------~~f~~~yl~~~~~~Ll~~L~~ 334 (1880)
-+||.+|++..+-.+ .+...+.+..|...+++-+..+++- .| ..|.......++|.|++.|.+
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 689999999866544 4566888999999999999888742 11 124444456688888888865
Q ss_pred CC------C---cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCC-chHHHHHH
Q 000194 335 PA------E---RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPV-MEPHVRGL 404 (1880)
Q Consensus 335 ~~------~---r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~-~~~~l~~l 404 (1880)
.. + ..+|-.||..++..+|+.+ +.+++..+.+.+...+-..++.+..+||.+.+.-.++ ++|++++.
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i---~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qa 409 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKI---MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQA 409 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhhHh---HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhh
Confidence 21 1 2477888888888888753 3335555666665444344566777777666521111 44555554
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHH
Q 000194 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQL 484 (1880)
Q Consensus 405 l~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1880)
+|-+.
T Consensus 410 lp~i~--------------------------------------------------------------------------- 414 (858)
T COG5215 410 LPGIE--------------------------------------------------------------------------- 414 (858)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 44322
Q ss_pred HHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHH
Q 000194 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEK 564 (1880)
Q Consensus 485 Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 564 (1880)
T Consensus 415 -------------------------------------------------------------------------------- 414 (858)
T COG5215 415 -------------------------------------------------------------------------------- 414 (858)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHH
Q 000194 565 LLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHL 642 (1880)
Q Consensus 565 Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l 642 (1880)
..++|+..-|+..+.+++|+++.+.|..+.|.. ....
T Consensus 415 -----------------------------------------n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v 453 (858)
T COG5215 415 -----------------------------------------NEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV 453 (858)
T ss_pred -----------------------------------------HhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence 111122222222222222222222221111110 0000
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHHHHHH-------hCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH
Q 000194 643 IQLLTYLEQSSADNKCREESAKLLGCLIR-------NCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1880)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~~l~~-------~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1880)
...+..+.+. ++.....+|.+-.++. ..+..+.||.+.|++.|+...... ..+.+.+...+.++|.|
T Consensus 454 sa~liGl~D~---p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~---~Ne~n~R~s~fsaLgtl 527 (858)
T COG5215 454 SASLIGLMDC---PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA---LNESNLRVSLFSALGTL 527 (858)
T ss_pred HHHHhhhhcc---chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHH
Confidence 1111122221 2222333444333333 335667788889999988875432 13567788889999999
Q ss_pred HHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHH
Q 000194 716 ARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1880)
Q Consensus 716 a~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l 795 (1880)
...+++.+.+-+..+.....+.+. ..+..+|++...-.. .+++ ++...
T Consensus 528 i~~~~d~V~~~~a~~~~~~~~kl~---------~~isv~~q~l~~eD~---------~~~~------------elqSN-- 575 (858)
T COG5215 528 ILICPDAVSDILAGFYDYTSKKLD---------ECISVLGQILATEDQ---------LLVE------------ELQSN-- 575 (858)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHH---------HHHHHhhhhhhhHHH---------HHHH------------HHHHH--
Confidence 988887776655555555444332 234444443211100 0111 11111
Q ss_pred HHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhH
Q 000194 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYH 875 (1880)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~ 875 (1880)
.+|.+.++-.-+ + ++++ -..+.+++.++++|.....+..|
T Consensus 576 -~~~vl~aiir~~----------------~--------~~ie---------------~v~D~lm~Lf~r~les~~~t~~~ 615 (858)
T COG5215 576 -YIGVLEAIIRTR----------------R--------RDIE---------------DVEDQLMELFIRILESTKPTTAF 615 (858)
T ss_pred -HHHHHHHHHHhc----------------C--------CCcc---------------cHHHHHHHHHHHHHhccCCchhh
Confidence 122222210000 0 0111 11256788888998765455678
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCC
Q 000194 876 QKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLP 955 (1880)
Q Consensus 876 ~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~ 955 (1880)
..|..||..+..+++.+|..|+++++|-+...++..+.-+-..+...+|.+...++..|.+|.+.+|..+.+.+......
T Consensus 616 ~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~ 695 (858)
T COG5215 616 GDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATH 695 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhc
Confidence 89999999999999999999999999999999954433456677788899999999999999999999999888765432
Q ss_pred cccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCc--------hhhHHHHHHHHHHHhcchhhhhh
Q 000194 956 ATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCND--------YTYVLDILHTLEVFGGTLDEHMH 1027 (1880)
Q Consensus 956 ~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~--------~~~~~~il~~l~~~g~~~~~~~~ 1027 (1880)
| .++..++++++.++.++|.+|.+|+..++-++.+.-+- +...+ ......+..+++.+|....+-+.
T Consensus 696 ---R-~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~-~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~ 770 (858)
T COG5215 696 ---R-DLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASEL-DPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVR 770 (858)
T ss_pred ---c-ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-CCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 2 24558999999999999999999999999888765431 21111 11223455566666666655566
Q ss_pred hhHHHHHHhh
Q 000194 1028 LLLPALIRLF 1037 (1880)
Q Consensus 1028 ~ilp~l~~~l 1037 (1880)
.++|.+..++
T Consensus 771 ~v~Pyv~sif 780 (858)
T COG5215 771 SVLPYVISIF 780 (858)
T ss_pred HhhhHHHHHH
Confidence 6666555443
No 11
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=8.8e-26 Score=298.90 Aligned_cols=621 Identities=17% Similarity=0.204 Sum_probs=387.9
Q ss_pred CCCChhhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHhhChhhHHHhHhHHHHHHHHhhcHH---HHHHHHHHHH-HHh
Q 000194 1185 QRSTKEDWAEWMRHLSIELLKES---PSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNAT---SQKHLVQSLE-MAF 1257 (1880)
Q Consensus 1185 ~~~~~~~w~~W~~~~~~~ll~~s---ps~~ir~c~~la~~~~~la~~Lf~~aF~s~w~~l~~~---~~~~l~~~l~-~~l 1257 (1880)
+..+.+.|..|+..++..++... -++.. +..++--....+-.-|.+|....++. ........|. ..+
T Consensus 1617 ~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~------~st~~~~~~t~i~~~i~~~l~~~s~~~~~~~~~~~~yi~~~~~ 1690 (2806)
T KOG0892|consen 1617 QQTNNESLSNWLSEFALKLFNMCGRSSTTHS------LSTYMANFSTSICQLIICLLLLESDFNPGNNLKQKDYIFELIL 1690 (2806)
T ss_pred hhhhccchhhHHHHHHHHHHHHHhccCCchh------hccccccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence 45678899999999998876541 11111 22333333334444455555444443 2223333333 233
Q ss_pred CCCC-CChHHHHHHHHHHHHhhhCCC-----------CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcH
Q 000194 1258 SSPN-IPPEILATLLNLAEFMEHDEK-----------PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPV 1325 (1880)
Q Consensus 1258 ~~~~-~p~~i~q~ll~l~efm~~~~~-----------~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~ 1325 (1880)
.+-. ...++..+-+|+.++..++.. .++++.........+|..|...+.+.-....+. ....
T Consensus 1691 ~sl~~n~~~~~~m~~ni~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k~------k~~e 1764 (2806)
T KOG0892|consen 1691 SSLLKNSNSIFKMDMNILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPKN------KRDE 1764 (2806)
T ss_pred hccccchhHHHHHHHHHHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCccc------chhH
Confidence 3322 334688888999999887643 356666666777777877777776654433211 1123
Q ss_pred HHHHHHHH----HHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000194 1326 AVVEALIH----INNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1880)
Q Consensus 1326 ~~~e~L~~----iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1880)
..+..|++ +|.++|+||+.+|+........ .++ .-+|+.++|..|+..|+-.- ..+. .+...|..+.|
T Consensus 1765 ~~~~~lqDil~~~y~~I~~pD~lyG~~~~~~~~~-~~l--~~~~he~~w~~aL~~~d~~~-~~~s----s~~~~~~~~sL 1836 (2806)
T KOG0892|consen 1765 LDITLLQDILKKAYESINCPDALYGIKRPTSLKN-LIL--ITAEHEKNWPRALSYYDLAD-MYPS----SEDEAGFINSL 1836 (2806)
T ss_pred HHHHHHHHHHHHHHhhCCCcchhcccCCcccccc-ccc--chhhhhhhHHHHHHhhcchh-hccc----hHhHhHHHHHH
Confidence 34444544 5999999999999987543322 222 23899999999999998653 2222 24569999999
Q ss_pred HHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHh---hcCCCCcchhhccccccccCCCCCchH
Q 000194 1402 AALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVS---RLDDGDESKLRGLGNTAANGDGSSNGT 1478 (1880)
Q Consensus 1402 ~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1478 (1880)
.+.|.-..+.-+.++.|... ..++......-++|||++|+||....+.. .... +. +| ..
T Consensus 1837 q~~g~~~I~~~y~~Gl~~~~-~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~~~~~~~-~~--y~--------------e~ 1898 (2806)
T KOG0892|consen 1837 QNAGFFHILEFYIDGLKSND-KIDEPSNEELVYEAAWRLGKWDILTLSLVDQNKTKG-DY--YH--------------ES 1898 (2806)
T ss_pred HHhcchhHHHHHhcChhhhh-hhhhhhhhhhhHHHHHhcCCcccCCcchhhhhhhhc-hh--HH--------------HH
Confidence 99999888887777776432 44455555677999999999999876652 2111 10 00 11
Q ss_pred HHHHHHHHHhc----------------------ChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHH
Q 000194 1479 FFRAVLLVRRG----------------------KVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRN 1536 (1880)
Q Consensus 1479 f~~a~~~i~~~----------------------~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~ 1536 (1880)
.|.+..+++.. ..-|+-.--|..+.++|.+.++|-+.+....... +.....+.-
T Consensus 1899 ~f~~l~al~ere~e~~yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~~----~~~~~~~~~ 1974 (2806)
T KOG0892|consen 1899 LFEALRALHEREIEGSYLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTADK----HQSNTDILQ 1974 (2806)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhcc----hhhhhHHHH
Confidence 22333333221 1345666679999999999999999874432111 222344667
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHhhcCCc-----------ccHHH-----HHHHHHHHHhcCChhHHHHH---HHHHhc
Q 000194 1537 MWTERIQGTKRNVEVWQALLAVRALVLPPT-----------EDVET-----WLKFASLCRKSGRISQARST---LVKLLQ 1597 (1880)
Q Consensus 1537 ~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~-----------e~~~~-----~lk~a~laRk~g~~~~a~~~---L~~l~~ 1597 (1880)
.|++-++.....++..+..+.-|+.+++.. ++... -+....++|.....+.-.+. +.....
T Consensus 1975 k~~t~~q~~~~~~~~~~~~~~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~~ 2054 (2806)
T KOG0892|consen 1975 KWKTNLQLSSQLMECLSLLIEDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIARAFPVIML 2054 (2806)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHHhhHHHHH
Confidence 788888777788888888888777776421 11111 11223333333322222221 111111
Q ss_pred CCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHH
Q 000194 1598 YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLK 1677 (1880)
Q Consensus 1598 ~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 1677 (1880)
.. .-...++.+...|+.+.. +..+++-.....-++..- ..+. ........+.....|++.
T Consensus 2055 ~~------------~~~~~~s~aq~~~k~~~~-~~~e~iL~~~~~kne~~~--~~s~-----~~~~~~~lk~~~~~~~a~ 2114 (2806)
T KOG0892|consen 2055 SI------------KLLCKFSLAQENLKHDID-KLSEAILWQRDEKNEAII--SLSE-----SLAKNNSLKEFPSDIYAV 2114 (2806)
T ss_pred HH------------HHHhhhhhhhhhccchhh-hhHHHHHHHHHhhhhHHH--HHHh-----hhhhcchhhhhHHHHHHH
Confidence 00 011122333334444322 112222111111011000 0000 000001122456789999
Q ss_pred HhhhHhhcCCCCCCCCHHHHHHHHHH-HHhhcccc------------hHHHHHHHHHHHHHHHhhhcc------------
Q 000194 1678 LGSWKRALPPGLDDESIPEIIAAYRN-ATQCATKW------------GKAWHSWALFNTAVMSHYTLR------------ 1732 (1880)
Q Consensus 1678 lg~w~~~~~~~~~~~~~~~i~~~y~~-a~~~~~~~------------~k~w~~wA~~n~~~~~~~~~~------------ 1732 (1880)
+|+|..+.+ .+....|++.|.. +.....++ .++|.+.|.|-|..+...+.+
T Consensus 2115 ~g~Wlaetk----~ens~~i~e~yl~~a~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l 2190 (2806)
T KOG0892|consen 2115 LGKWLAETK----SENSALISEKYLEKAVSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDL 2190 (2806)
T ss_pred HHHHHHHhh----ccchhhhHHHHHHHHHHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHH
Confidence 999999886 4566677776653 43332221 368888888877665533210
Q ss_pred ------C--------------------------------CCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1733 ------G--------------------------------LPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1733 ------~--------------------------------~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
+ .++.+.+|+..|++||++++..+ .++.-.-+.|+++
T Consensus 2191 ~k~~~~~~~~~~er~~q~~~~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~-----~~~D~~~i~R~cs 2265 (2806)
T KOG0892|consen 2191 QKLERSTVEASNEREEQMRKNHHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSES-----DEYDVDLIFRCCS 2265 (2806)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhc-----ccccHHHHHHHhh
Confidence 0 01245679999999999999885 5677777999999
Q ss_pred HHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcC-----
Q 000194 1775 LWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIH-SNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKS----- 1848 (1880)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~-~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS----- 1848 (1880)
+||++.+..+++..+++.+.+||+|+|++|+.||.|||+ ..+..+++.+..|+.+++++||+|++|.|+.....
T Consensus 2266 lWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e 2345 (2806)
T KOG0892|consen 2266 LWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNE 2345 (2806)
T ss_pred hhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChh
Confidence 999999999999999999999999999999999999999 68889999999999999999999999999987632
Q ss_pred -----C---cHHHHHHHHHHHHHHhhcccccccccc
Q 000194 1849 -----I---SNLRRAAAQEVVDKVRQHSGVLVDQSC 1876 (1880)
Q Consensus 1849 -----~---~~~R~~~a~~Il~~~~~~~~~lv~~a~ 1876 (1880)
. +..|+.+|+.++.......+++|.|.+
T Consensus 2346 ~~n~sr~sl~~~rki~a~l~~~~v~~~~~~~v~~v~ 2381 (2806)
T KOG0892|consen 2346 DENRSRGSIDRDRKIAAELDLCDVNQGAGNMVRQLE 2381 (2806)
T ss_pred hhhhcccccchhHHHHHHHhhhHhhccchhHHHHHH
Confidence 1 257888899999999988888888743
No 12
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-25 Score=261.03 Aligned_cols=500 Identities=20% Similarity=0.291 Sum_probs=379.9
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch------hhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcC
Q 000194 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD------FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1880)
Q Consensus 556 ~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~------~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1880)
+.++.+++++++- +..++|.+|..++.+++ .|.. +..-..++..+|...+|++++||......+.-|.+.
T Consensus 170 rpl~~mipkfl~f-~~h~spkiRs~A~~cvN---q~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 170 RPLNIMIPKFLQF-FKHPSPKIRSHAVGCVN---QFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred CchHHhHHHHHHH-HhCCChhHHHHHHhhhh---heeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 4578888898875 68899999999999885 2211 111235788999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh--CcccccCchHHHHHHHHHHhccCCC----------
Q 000194 630 NPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLIRPYIAPIHKALVARLLEGTG---------- 697 (1880)
Q Consensus 630 ~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~~py~~~il~~ll~~l~~~~~---------- 697 (1880)
.|..++|+++.++.-.+...++. +..+.-+||+....+++. ++..+.||++.++++|+..+...+.
T Consensus 246 r~dkl~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee 323 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE 323 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence 99999999998776556555543 455778899999999987 6788999999999999987642210
Q ss_pred ----C-------------------------------------CCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH
Q 000194 698 ----I-------------------------------------NANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1880)
Q Consensus 698 ----~-------------------------------------~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~ 736 (1880)
+ ..+.+++.....+++.|+.+.|+++ ++.++|.+.+
T Consensus 324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el---L~~l~PlLk~ 400 (885)
T KOG2023|consen 324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL---LPILLPLLKE 400 (885)
T ss_pred cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH---HHHHHHHHHH
Confidence 0 0125677778889999999988765 4467888888
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccC
Q 000194 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLS 816 (1880)
Q Consensus 737 ~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~ 816 (1880)
.|... .+.+|++++.+||.+++++-.-+.||. |++++.+++.|.+ ..+-||.-+..+++..|. |. .
T Consensus 401 ~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L--peLip~l~~~L~D-KkplVRsITCWTLsRys~---wv---~---- 466 (885)
T KOG2023|consen 401 HLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL--PELIPFLLSLLDD-KKPLVRSITCWTLSRYSK---WV---V---- 466 (885)
T ss_pred HcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch--HHHHHHHHHHhcc-CccceeeeeeeeHhhhhh---hH---h----
Confidence 77753 688999999999999999876666764 8999999999964 467888877777666441 11 0
Q ss_pred CCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC
Q 000194 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1880)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~ 896 (1880)
..+.++|+.. ++..|++.+-|.. ..++.+++.|+..+-...|...+||
T Consensus 467 ------------------------------~~~~~~~f~p-vL~~ll~~llD~N-K~VQEAAcsAfAtleE~A~~eLVp~ 514 (885)
T KOG2023|consen 467 ------------------------------QDSRDEYFKP-VLEGLLRRLLDSN-KKVQEAACSAFATLEEEAGEELVPY 514 (885)
T ss_pred ------------------------------cCChHhhhHH-HHHHHHHHHhccc-HHHHHHHHHHHHHHHHhccchhHHH
Confidence 0112345544 4555556555554 3467788888888888889999999
Q ss_pred cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHH
Q 000194 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLC 974 (1880)
Q Consensus 897 l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~ 974 (1880)
+..|+..+...++..+..-.-.+++++|++.+.+|.+.. .|++-+|+-+.+.|+..+. ++ ....+++.|+.+++
T Consensus 515 l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd--~D--KdLfPLLEClSsia 590 (885)
T KOG2023|consen 515 LEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD--SD--KDLFPLLECLSSIA 590 (885)
T ss_pred HHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc--cc--chHHHHHHHHHHHH
Confidence 999999999999877655455677999999999998874 7999999999999987542 22 22348999999999
Q ss_pred HHhhhhhhccchhhHHHHHHhcccc---------cc---cCchh---hHHHHHHHHHH-Hhcchhhhhhh--hHHHHHHh
Q 000194 975 LALNDEFRTHLPVILPCCIQVLSDA---------ER---CNDYT---YVLDILHTLEV-FGGTLDEHMHL--LLPALIRL 1036 (1880)
Q Consensus 975 ~~l~~~f~~yl~~l~p~ll~~l~~~---------~~---~~~~~---~~~~il~~l~~-~g~~~~~~~~~--ilp~l~~~ 1036 (1880)
.+++..|.||.++++....+++.+. +. ..++. +++..++.+.. +|.++++.+.. ++..+...
T Consensus 591 ~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C 670 (885)
T KOG2023|consen 591 SALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQC 670 (885)
T ss_pred HHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHH
Confidence 9999999999999999998888621 10 12222 34666666644 66666655532 34444444
Q ss_pred hcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 000194 1037 FKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114 (1880)
Q Consensus 1037 l~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l 1114 (1880)
+.. ...+||++|...+|++++. -.+.|++...+..+...++..+-...++|+.+++.++.++|.+..+|++.|..-|
T Consensus 671 ~~D-~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L 749 (885)
T KOG2023|consen 671 LQD-EVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDL 749 (885)
T ss_pred hcc-CChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHH
Confidence 433 4788999999999999875 3466788888887777776666788999999999999999999999988776655
Q ss_pred H
Q 000194 1115 L 1115 (1880)
Q Consensus 1115 ~ 1115 (1880)
.
T Consensus 750 ~ 750 (885)
T KOG2023|consen 750 I 750 (885)
T ss_pred H
Confidence 4
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.94 E-value=2.1e-20 Score=225.52 Aligned_cols=801 Identities=17% Similarity=0.175 Sum_probs=496.7
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc-
Q 000194 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE- 229 (1880)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~- 229 (1880)
...++-++..| ++++.....-|+..++-++...|. .++..+++.+..++-......|+.+.-+|......+.-..
T Consensus 46 ~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsKvke---~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~ 121 (1233)
T KOG1824|consen 46 RKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSKVKE---DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS 121 (1233)
T ss_pred hHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhhchH---HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccc
Confidence 34455555555 456666677788888888855443 4778888888888777777888888888876644333100
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000194 230 TRWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1880)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~l 308 (1880)
........+++.+.+.+++....+ ..++--++..++.++...|+++.+.-..+...++..+.+....||+.++.+|+.+
T Consensus 122 ~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~l 201 (1233)
T KOG1824|consen 122 SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHL 201 (1233)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 113345567777877777654322 2356677778888888888888775556777777778888899999999999999
Q ss_pred hhhChhhHHHHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCC---CCCCCchH
Q 000194 309 AHFLRDRFVTNYLKICMNHILTVLRIPA---ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR---RGKPSLEA 382 (1880)
Q Consensus 309 a~~~~~~f~~~yl~~~~~~Ll~~L~~~~---~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~---~~~~~~~a 382 (1880)
|.+.+.. .+..++.+|+.-|.+.. .-....+|||.++++.|.++..|++.+++.+.++.... ..+.++..
T Consensus 202 a~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 202 ASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYC 277 (1233)
T ss_pred HHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHH
Confidence 9988763 24677888888776542 22468899999999999999999999999999998433 22335678
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 000194 383 LACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPI 462 (1880)
Q Consensus 383 ~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~ 462 (1880)
+++++.+......++.||.++++..+++ .|+ .+|.-.+.
T Consensus 278 lQale~fl~rcp~ei~p~~pei~~l~l~-------------------------------yis----YDPNy~yd------ 316 (1233)
T KOG1824|consen 278 LQALESFLRRCPKEILPHVPEIINLCLS-------------------------------YIS----YDPNYNYD------ 316 (1233)
T ss_pred HHHHHHHHHhChhhhcccchHHHHHHHH-------------------------------Hhc----cCCCCCCC------
Confidence 9999999999888999999888776442 221 11110000
Q ss_pred CCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC--ChHHHHHHHHHHHHhhhccCCCcccc
Q 000194 463 RGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE--DKATRKDAALCCCKLVANSFSGVSFT 540 (1880)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~--~~~VR~aAa~~~~~l~~~~~~~~~~~ 540 (1880)
++|.++ + +++..-+. + + .-..|-|++ ++.||+||++++..++..-.+
T Consensus 317 ----------~~eDed------~-~~~ed~eD--d---e----~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E----- 365 (1233)
T KOG1824|consen 317 ----------TEEDED------A-MFLEDEED--D---E----QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE----- 365 (1233)
T ss_pred ----------Cccchh------h-hhhhcccc--c---h----hccccccccchhHHHHHHHHHHHHHHHhccHH-----
Confidence 000000 0 00000000 0 0 012455544 589999999988877753221
Q ss_pred ccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc----CCC-----------------Ccch-hhc--
Q 000194 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY----GNR-----------------GFDD-FLA-- 596 (1880)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~----~~~-----------------~fd~-~L~-- 596 (1880)
+.......+-+.++. -+.|.++.|+..++.++. -.. .++. +|.
T Consensus 366 ------------~L~~~~q~l~p~lI~-RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~ 432 (1233)
T KOG1824|consen 366 ------------MLPDFYQTLGPALIS-RFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQ 432 (1233)
T ss_pred ------------HHHHHHHHhCHHHHH-HHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhh
Confidence 123333333344443 368889999988777641 000 1111 121
Q ss_pred cHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH-HHHHHHhCcc
Q 000194 597 QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL-LGCLIRNCER 675 (1880)
Q Consensus 597 ~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~-L~~l~~~~~~ 675 (1880)
.+.+++.+-..+.+.+...|..++..|..+....|+...+++...+.-....+.+-......+..++-. .+.++.+.++
T Consensus 433 ~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 433 VPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred hHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 234566666666676767889999999999999998776666655554555554321233445555544 4556677789
Q ss_pred cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc-------CCchhhhHHhHHHHHHHHHhcC-CchhhH
Q 000194 676 LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-------GFGMRQYISELMPLIVEALLDG-AAVTKR 747 (1880)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-------g~~~~~~~~~l~p~l~~~l~d~-~~~~~r 747 (1880)
.|.||++.+.+.++....++ -+.+...++...+.+.++. +.+..||+.+++...++.|... .+.++|
T Consensus 513 ~fhp~~~~Ls~~v~~aV~d~-----fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVk 587 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAVGDP-----FYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVK 587 (1233)
T ss_pred hcccchhhhhhHHHHHhcCc-----hHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHH
Confidence 99999999999999998875 7788888888888888764 3567899999999999988632 367899
Q ss_pred HHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCC
Q 000194 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAAS 827 (1880)
Q Consensus 748 ~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~ 827 (1880)
+.|+.++|+++...|.... .+.|..++.++.-++++ -+|..|+|++..+.. .|...
T Consensus 588 eraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~nE---iTRl~AvkAlt~Ia~-S~l~i------------------ 643 (1233)
T KOG1824|consen 588 ERAISCMGQIIANFGDFLG--NELPRTLPILLERLGNE---ITRLTAVKALTLIAM-SPLDI------------------ 643 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhch---hHHHHHHHHHHHHHh-cccee------------------
Confidence 9999999999999987644 34588999999999865 679999999887642 11110
Q ss_pred CCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC-cchhhHHHHH
Q 000194 828 DSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY-LPKVLPDLFH 906 (1880)
Q Consensus 828 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~-l~~iip~ll~ 906 (1880)
+ + .+ ..+.++..|..-++... .....+...++..++++.+....++ ++.++-.+..
T Consensus 644 ---------~-----l---~~-----~l~~il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~ 700 (1233)
T KOG1824|consen 644 ---------D-----L---SP-----VLTEILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPP 700 (1233)
T ss_pred ---------e-----h---hh-----hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhh
Confidence 0 0 00 11333444444443221 1233456667777777776655443 3444444444
Q ss_pred HHhcCCcchhHHHHHHHHHHHHHH----HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh
Q 000194 907 TVRTCDDYLKDYITWKLGTLVSIV----RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982 (1880)
Q Consensus 907 ~l~~~~~~~~~~~~~~l~~lv~~~----~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~ 982 (1880)
.+..++-.+-+..+..+.++..+- -.+-.+++++++..+..-+- +.. . ...++....+++..-..++.
T Consensus 701 Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spll----qg~---a-l~~~l~~f~alV~t~~~~l~ 772 (1233)
T KOG1824|consen 701 LISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLL----QGG---A-LSALLLFFQALVITKEPDLD 772 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccc----cch---H-HHHHHHHHHHHHhcCCCCcc
Confidence 444333334455555555555432 23445777777776653221 110 0 01233333333333333332
Q ss_pred ccchhhHHHHHHhcccccc---c--CchhhHHHHHHHHHHHhcchhhhhhhhH-HHHHHhhcCCCcHHHHHHHHHHHHhh
Q 000194 983 THLPVILPCCIQVLSDAER---C--NDYTYVLDILHTLEVFGGTLDEHMHLLL-PALIRLFKVDAPVDIRRAAIETLTRL 1056 (1880)
Q Consensus 983 ~yl~~l~p~ll~~l~~~~~---~--~~~~~~~~il~~l~~~g~~~~~~~~~il-p~l~~~l~~~~~~~vr~~ai~~l~~l 1056 (1880)
| -.++..+..+-. + ..+..-..+-.|..++.....+--..+. ..++++.....+..+|.-|+-++|.+
T Consensus 773 -y-----~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 773 -Y-----ISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred -H-----HHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 3 334444432210 0 1122222233333333222222222222 22333333446788999999999999
Q ss_pred cccccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 000194 1057 IPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114 (1880)
Q Consensus 1057 ~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l 1114 (1880)
.+..+.++.. .+-..++..+++++++++.+|-.+|+.+..- ....|+|-|...+
T Consensus 847 gr~~~~s~~~-e~~~~iieaf~sp~edvksAAs~ALGsl~vg---nl~~yLpfil~qi 900 (1233)
T KOG1824|consen 847 GRRKDLSPQN-ELKDTIIEAFNSPSEDVKSAASYALGSLAVG---NLPKYLPFILEQI 900 (1233)
T ss_pred ccCCCCCcch-hhHHHHHHHcCCChHHHHHHHHHHhhhhhcC---chHhHHHHHHHHH
Confidence 9987765532 2223556889999999999999999999761 2234555554443
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.93 E-value=2.9e-19 Score=215.89 Aligned_cols=868 Identities=15% Similarity=0.179 Sum_probs=505.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCC---CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHH----HHHHHhhhcCCChh
Q 000194 12 GPPAPGAGGGSLDALNRILADLCTHG---NPKEGASLALRKHIEEQARDLGGEAFSRFMDQL----YDRISGLLESNDAA 84 (1880)
Q Consensus 12 ~~~~~~~~~~~~~~~~~l~~~l~s~~---~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l----~~~i~~l~~s~~~~ 84 (1880)
+|| -....-++.+..++.+.|++.. ++..++--+..+++...+.. |..++... .+-+..-+.++-..
T Consensus 116 l~P-~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr-----~g~ll~~fh~~il~~l~~ql~s~R~a 189 (1233)
T KOG1824|consen 116 LPP-SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR-----FGTLLPNFHLSILKCLLPQLQSPRLA 189 (1233)
T ss_pred CCC-ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh-----hcccCcchHHHHHHHHhhcccChHHH
Confidence 677 4557788899999999998764 33333322333333222211 22222222 22233335567777
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc--
Q 000194 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-- 162 (1880)
Q Consensus 85 ~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-- 162 (1880)
.|+.++.|++.|.....++ -+..-....++++=+ .......+.--++++.++...|.....+.++.++.+.+|..
T Consensus 190 VrKkai~~l~~la~~~~~~--ly~~li~~Ll~~L~~-~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~ 266 (1233)
T KOG1824|consen 190 VRKKAITALGHLASSCNRD--LYVELIEHLLKGLSN-RTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI 266 (1233)
T ss_pred HHHHHHHHHHHHHHhcCHH--HHHHHHHHHHhccCC-CCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccc
Confidence 8899999999997654222 111111233344333 34567788889999999998777777788888888888874
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l 241 (1880)
++.++..|...+++++.+.+.||.-+.||.+.++...+..+. ||+..--.. .+--...++. .+...+
T Consensus 267 e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~-eDed~~~~ed---~eDde~-------- 334 (1233)
T KOG1824|consen 267 EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE-EDEDAMFLED---EEDDEQ-------- 334 (1233)
T ss_pred ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc-cchhhhhhhc---cccchh--------
Confidence 455667999999999999999999999999999999999886 887532110 1111111111 111000
Q ss_pred HHHHhhccCCC--ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC-------
Q 000194 242 EATQDGLGRNA--PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL------- 312 (1880)
Q Consensus 242 ~~~~~~l~~~~--~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~------- 312 (1880)
.+.-.+.+ +|.+|.+|+.++..++..-.|.+...+..+++.+++.++.|++.|+..++++.-.+-...
T Consensus 335 ---~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 335 ---DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred ---ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccc
Confidence 01111222 499999999999999998888888899999999999999999999998887765543111
Q ss_pred ---------hhhHHHHHHHHHHHHHHHhhcC------CCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCC
Q 000194 313 ---------RDRFVTNYLKICMNHILTVLRI------PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGK 377 (1880)
Q Consensus 313 ---------~~~f~~~yl~~~~~~Ll~~L~~------~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~ 377 (1880)
+..|-..++.+..+.+...+.+ .+.|..+|..|.++....++.+.++++.+++.|...|.+++..
T Consensus 412 ~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 1112235777777777766642 2356789999999999999989999999999999999876543
Q ss_pred C--CchHHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHH---HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCC
Q 000194 378 P--SLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLV---DALEQITVSIPSLLPTIQDRLLDCISFVLSKSH 451 (1880)
Q Consensus 378 ~--~~~a~~~l~~la~~~g~-~~~~~l~~ll~~l~~~~ls~~l~---~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~ 451 (1880)
. ...++.++..+....|+ .|.||+..+.+++..+--.+... ++|... ..+.+.|. +
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~------------~~lvkvir------p 553 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVC------------QQLVKVIR------P 553 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHH------------HHHHHHhc------c
Confidence 2 24566666666556665 79999999888877542222211 122111 01111110 0
Q ss_pred CCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH---HHHhhhcc--CCChHHHHHHHHHH
Q 000194 452 YSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR---DSVVLYLD--DEDKATRKDAALCC 526 (1880)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~---~~~~~~l~--~~~~~VR~aAa~~~ 526 (1880)
.. ++ ..|+ ..||+. .+++..+. +.+.+||.+|..++
T Consensus 554 l~---~~-------------------------------~~~d-----~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscm 594 (1233)
T KOG1824|consen 554 LQ---PP-------------------------------SSFD-----ASPYVKTMYDCTLQRLKATDSDQEVKERAISCM 594 (1233)
T ss_pred cC---CC-------------------------------ccCC-----CChhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 00 00 0011 123333 34444443 45789999998888
Q ss_pred HHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC----CCCcc--hhhccHhh
Q 000194 527 CKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG----NRGFD--DFLAQADC 600 (1880)
Q Consensus 527 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~----~~~fd--~~L~~~~~ 600 (1880)
++++..... ....-+..+++.|++..-.|+ .|.+++++++. .-.++ +.| .++
T Consensus 595 gq~i~~fgD-----------------~l~~eL~~~L~il~eRl~nEi---TRl~AvkAlt~Ia~S~l~i~l~~~l--~~i 652 (1233)
T KOG1824|consen 595 GQIIANFGD-----------------FLGNELPRTLPILLERLGNEI---TRLTAVKALTLIAMSPLDIDLSPVL--TEI 652 (1233)
T ss_pred HHHHHHHhh-----------------hhhhhhHHHHHHHHHHHhchh---HHHHHHHHHHHHHhccceeehhhhH--HHH
Confidence 877754321 122335666777777655544 56677776641 11122 111 234
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCc
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py 680 (1880)
++.+...+.......|......+..|.+.....+.+++-+.++.-+..+-.. .+...-+.|..++..++...+..+...
T Consensus 653 l~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise-sdlhvt~~a~~~L~tl~~~~ps~l~~~ 731 (1233)
T KOG1824|consen 653 LPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE-SDLHVTQLAVAFLTTLAIIQPSSLLKI 731 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5555555544445677778888888877765555555544443333333333 466777889999999998877777777
Q ss_pred hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHH----HH
Q 000194 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTL----GQ 756 (1880)
Q Consensus 681 ~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~L----g~ 756 (1880)
..++++.++..++.+.. ..+.....+.-+..+.....+.+. |. .++..+..-.-++........|..++ ++
T Consensus 732 ~~~iL~~ii~ll~Spll---qg~al~~~l~~f~alV~t~~~~l~-y~-~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~ 806 (1233)
T KOG1824|consen 732 SNPILDEIIRLLRSPLL---QGGALSALLLFFQALVITKEPDLD-YI-SLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAA 806 (1233)
T ss_pred hhhhHHHHHHHhhCccc---cchHHHHHHHHHHHHHhcCCCCcc-HH-HHHHHHcCCcccccccchhHHHHHHHHHHHHH
Confidence 77888888888876521 111222222333334333333332 22 22222221111111111223344443 44
Q ss_pred HHhhcCcccccCCcchHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCC
Q 000194 757 VVQSTGYVITPYNEYPQLLGLLLKMLNG-ELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1880)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~L~~-~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1880)
++..++.+ -+.+...+..-+.+ ..+..+|.-|+-.+|.+|--.+.
T Consensus 807 Lt~~~~~~------s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~---------------------------- 852 (1233)
T KOG1824|consen 807 LTCACPQK------SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL---------------------------- 852 (1233)
T ss_pred HHHhcccc------chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC----------------------------
Confidence 44444422 23556666555543 33567787788888888721000
Q ss_pred CcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcch
Q 000194 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYL 915 (1880)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~ 915 (1880)
.+..+ |++++ +..++.|+- +...++..|++.+ .+--++.++|.++..+.+. |..
T Consensus 853 ------------s~~~e-~~~~i----ieaf~sp~e-dvksAAs~ALGsl-------~vgnl~~yLpfil~qi~sq-pk~ 906 (1233)
T KOG1824|consen 853 ------------SPQNE-LKDTI----IEAFNSPSE-DVKSAASYALGSL-------AVGNLPKYLPFILEQIESQ-PKR 906 (1233)
T ss_pred ------------Ccchh-hHHHH----HHHcCCChH-HHHHHHHHHhhhh-------hcCchHhHHHHHHHHHhcc-hHh
Confidence 01112 23444 455666642 3344444444433 2345677888888877654 333
Q ss_pred hHHHHHHHHHHHHHHH-HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHh-----------------
Q 000194 916 KDYITWKLGTLVSIVR-QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL----------------- 977 (1880)
Q Consensus 916 ~~~~~~~l~~lv~~~~-~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l----------------- 977 (1880)
+..++..|-.++.... ..+.||++.|..++........ +..| ..+-.|++.++-.=
T Consensus 907 QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e--egtR----~vvAECLGkL~l~epesLlpkL~~~~~S~a~ 980 (1233)
T KOG1824|consen 907 QYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE--EGTR----NVVAECLGKLVLIEPESLLPKLKLLLRSEAS 980 (1233)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch--hhhH----HHHHHHhhhHHhCChHHHHHHHHHHhcCCCc
Confidence 3444444544444332 3467999999999987765433 1222 13445555443111
Q ss_pred -----------------hhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcC-
Q 000194 978 -----------------NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKV- 1039 (1880)
Q Consensus 978 -----------------~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~- 1039 (1880)
+.-+.+|+.+-+..++..++|+|. .+.--++.++.++..+=+..+..++|.+++++-.
T Consensus 981 ~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl----~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 981 NTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDL----EVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred chhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCch----hHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 113556777777788888877653 3333344444444443333333444444433310
Q ss_pred --------------------CCcHHHHHHHHHHHHhhcc
Q 000194 1040 --------------------DAPVDIRRAAIETLTRLIP 1058 (1880)
Q Consensus 1040 --------------------~~~~~vr~~ai~~l~~l~~ 1058 (1880)
+...++|+.|.+++-.+..
T Consensus 1057 TkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1057 TKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred hhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHH
Confidence 1246899999999977654
No 15
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.1e-20 Score=220.08 Aligned_cols=723 Identities=17% Similarity=0.196 Sum_probs=445.4
Q ss_pred chhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHhhhchh----hHHHHHH--
Q 000194 167 EYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT--LAVRERAVEALRACLRVIEKRETR----WRVQWYY-- 238 (1880)
Q Consensus 167 ~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~--~~VR~aA~~al~~~~~~i~~r~~~----~~~~~~~-- 238 (1880)
.+.|..|-..|.+++. ..+++++..+-..|.|.+ ..+|.+|.-.|+..+. .+|+. ....|+.
T Consensus 15 ~n~~~~Ae~~l~~~~~-------~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~---akd~~~k~~~~qRWl~l~ 84 (859)
T KOG1241|consen 15 QNVRKRAEKQLEQAQS-------QNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLT---AKDPERKQQYQQRWLQLP 84 (859)
T ss_pred cchHHHHHHHHHHHHh-------ccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhc---cCCHHHHHHHHHHHHcCC
Confidence 3456666667777664 356677777777777654 6789999998888653 24432 3445642
Q ss_pred -----HHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcch-hHHHHHHHHHhHhHhhhC
Q 000194 239 -----RMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRD-RLVRLSITSLLPRIAHFL 312 (1880)
Q Consensus 239 -----~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~-~~Vr~~~~~~i~~la~~~ 312 (1880)
.+-.-+...|+++. .+....|..+++.+... |.=....++++..+.+...... ..+++.++.+||.++...
T Consensus 85 ~e~reqVK~~il~tL~~~e-p~~~s~Aaq~va~IA~~--ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i 161 (859)
T KOG1241|consen 85 AEIREQVKNNILRTLGSPE-PRRPSSAAQCVAAIACI--ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDI 161 (859)
T ss_pred HHHHHHHHHHHHHHcCCCC-CCccchHHHHHHHHHHh--hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccC
Confidence 23334455677664 34455555666666542 1112334455555555444433 359999999999999754
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHHHHHHhhchhhhhhh--hhHHHHHHHHhhcCCCCCCCchHHHHH
Q 000194 313 RDRFVTNYLKICMNHILTVLRIP----AERDSGFIALGEMAGALDGELFHY--LPTITSHLREAIAPRRGKPSLEALACV 386 (1880)
Q Consensus 313 ~~~f~~~yl~~~~~~Ll~~L~~~----~~r~~a~~alg~la~~v~~~~~p~--l~~i~~~l~~~l~~~~~~~~~~a~~~l 386 (1880)
..+-.......++..+..-.++. ..|-+|..||-+-.+..+..|..- .+.||+.+.++-+..+.+.+..+|.|+
T Consensus 162 ~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~Cl 241 (859)
T KOG1241|consen 162 DPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCL 241 (859)
T ss_pred CHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHH
Confidence 33333333456665555555443 247788888877666666555422 245788888877666555667899999
Q ss_pred HHHHHHhCCCchHHHHH-HHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 000194 387 GNIARAMGPVMEPHVRG-LLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGN 465 (1880)
Q Consensus 387 ~~la~~~g~~~~~~l~~-ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~ 465 (1880)
-+|+.-+.+.+.|||.+ ++..-+..-.|+.-..+++.+ .++.+|.+.-.|.... .|+-...+.+|
T Consensus 242 vkIm~LyY~~m~~yM~~alfaitl~amks~~deValQai-----EFWsticeEEiD~~~e--~~e~~d~~~~p------- 307 (859)
T KOG1241|consen 242 VKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAI-----EFWSTICEEEIDLAIE--YGEAVDQGLPP------- 307 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH-----HHHHHHHHHHHHHHHH--HHHHhhcCCCc-------
Confidence 99999999999999986 444333322244434445444 4555565554443211 01111101110
Q ss_pred ccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhh---ccCCChHHHHHHHHHHHHhhhccCCCcccccc
Q 000194 466 VMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLY---LDDEDKATRKDAALCCCKLVANSFSGVSFTQF 542 (1880)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~---l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~ 542 (1880)
.....|.+++. .+.|.+.+.+.+. -+++++.+-+||+ +|..++.....
T Consensus 308 --------------~~~~fa~~a~~-------~v~P~Ll~~L~kqde~~d~DdWnp~kAAg-~CL~l~A~~~~------- 358 (859)
T KOG1241|consen 308 --------------SSKYFARQALQ-------DVVPVLLELLTKQDEDDDDDDWNPAKAAG-VCLMLFAQCVG------- 358 (859)
T ss_pred --------------hhhHHHHHHHh-------HhhHHHHHHHHhCCCCcccccCcHHHHHH-HHHHHHHHHhc-------
Confidence 00111111111 1112222222221 1234567777665 56666543321
Q ss_pred CCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHH
Q 000194 543 GASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISV 622 (1880)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~ 622 (1880)
..++..|++ +++.-+..||++-|.++..+|
T Consensus 359 ------------D~Iv~~Vl~-Fiee~i~~pdwr~reaavmAF------------------------------------- 388 (859)
T KOG1241|consen 359 ------------DDIVPHVLP-FIEENIQNPDWRNREAAVMAF------------------------------------- 388 (859)
T ss_pred ------------ccchhhhHH-HHHHhcCCcchhhhhHHHHHH-------------------------------------
Confidence 012233332 233334555555555555554
Q ss_pred HHhhhc-CCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc--CchHHHHHHHHHHhccCCCCC
Q 000194 623 AGRLSE-KNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR--PYIAPIHKALVARLLEGTGIN 699 (1880)
Q Consensus 623 l~~l~~-~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~--py~~~il~~ll~~l~~~~~~~ 699 (1880)
|.+-+ -+|....|...+.+..++..+. + +..-.|..++|.||.+++..+..+- .|..+++..++..+.+
T Consensus 389 -GSIl~gp~~~~Lt~iV~qalp~ii~lm~-D-~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D----- 460 (859)
T KOG1241|consen 389 -GSILEGPEPDKLTPIVIQALPSIINLMS-D-PSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND----- 460 (859)
T ss_pred -HhhhcCCchhhhhHHHhhhhHHHHHHhc-C-chhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-----
Confidence 43222 1222233444443333344333 3 4666778899999999999886654 4678899999999997
Q ss_pred CChhHHHHHHHHHHHHHHhcC---------CchhhhHHhHHHHHHHHHh--cCCchhhHHHHHHHHHHHHhhcCcccccC
Q 000194 700 ANNGIISGVLVTVGDLARVGG---------FGMRQYISELMPLIVEALL--DGAAVTKREVAVSTLGQVVQSTGYVITPY 768 (1880)
Q Consensus 700 ~~~~v~~~~~~~l~~La~~~g---------~~~~~~~~~l~p~l~~~l~--d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~ 768 (1880)
.+.+..+++.++-.|++... +...||++.++..+++.-. |.+....|.+|..+|+.++.+....
T Consensus 461 -ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~---- 535 (859)
T KOG1241|consen 461 -EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD---- 535 (859)
T ss_pred -CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH----
Confidence 67888888888888875431 2344677777777777653 3445678999999999999886542
Q ss_pred CcchHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCC
Q 000194 769 NEYPQLLGLLLKMLNGELVWSTRREVLKVLGI-MGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSF 847 (1880)
Q Consensus 769 ~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~-lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 847 (1880)
-||.+.+..+-++.. +. .++. +. ++
T Consensus 536 -vy~~v~~~~l~il~k-----l~-q~i~--~~~l~--------------------------------------------- 561 (859)
T KOG1241|consen 536 -VYPMVQKLTLVILEK-----LD-QTIS--SQILS--------------------------------------------- 561 (859)
T ss_pred -HHHHHHHHHHHHHHH-----HH-HHHH--HHhcc---------------------------------------------
Confidence 244444444433321 00 0000 00 00
Q ss_pred CCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcC-CcchhHHHHHHHHHH
Q 000194 848 ATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTL 926 (1880)
Q Consensus 848 ~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~-~~~~~~~~~~~l~~l 926 (1880)
.++ . ..+.+.+...+..+..|.+.+|++..++-+++|..|++.++.. +....+.+|..++++
T Consensus 562 --~~d---r------------~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl 624 (859)
T KOG1241|consen 562 --LAD---R------------AQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTL 624 (859)
T ss_pred --Hhh---H------------HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHH
Confidence 000 0 0011233456777888888899998899999999999999873 233788999999999
Q ss_pred HHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh
Q 000194 927 VSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT 1006 (1880)
Q Consensus 927 v~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~ 1006 (1880)
+..+|..|..|+|.+.+.+...+.+... .++- ..++++++.++.+++++|.||+..++..+++.|+++ ..+|.
T Consensus 625 ~~~Lg~~F~kym~~f~pyL~~gL~n~~e----~qVc-~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~--~~hR~ 697 (859)
T KOG1241|consen 625 AESLGKGFAKYMPAFKPYLLMGLSNFQE----YQVC-AAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSP--NLHRN 697 (859)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHhhcchH----HHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCc--ccccc
Confidence 9999999999999999999888854321 1111 267999999999999999999999999999999874 35788
Q ss_pred hHHHHHHHHH----HHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc--ccchhHhHHHHHHHhhCCC
Q 000194 1007 YVLDILHTLE----VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ--VTGHISSLVHHLKLVLDGK 1080 (1880)
Q Consensus 1007 ~~~~il~~l~----~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~--~~~~~~~ii~~l~~~l~~~ 1080 (1880)
++..||++|. .+|.+|+.|+..++|.+...-... ....+ ..+|+
T Consensus 698 vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~----------------~d~~~~~~~dYv-------------- 747 (859)
T KOG1241|consen 698 VKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQ----------------TDPADDSMVDYV-------------- 747 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcc----------------CCCCcccHHHHH--------------
Confidence 8888888885 468889999998888776432100 00001 11222
Q ss_pred CHHHHHHHHHHHHHHHHHhcc-----ccccchhHHHHHHHhC
Q 000194 1081 NDELRKDAVDALCCLAHALGE-----DFTIFIPSIHKLLLKH 1117 (1880)
Q Consensus 1081 ~~~l~~~al~~L~~l~~~~g~-----~f~~fip~i~~~l~~~ 1117 (1880)
.++|+.++++-..++.-++. -..+|+|.|...+.+-
T Consensus 748 -d~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I 788 (859)
T KOG1241|consen 748 -DELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRI 788 (859)
T ss_pred -HHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHH
Confidence 36788888888888887772 2348999999988774
No 16
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=99.90 E-value=5.3e-24 Score=222.85 Aligned_cols=160 Identities=49% Similarity=0.827 Sum_probs=131.4
Q ss_pred ccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCccccccc
Q 000194 764 VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDL 843 (1880)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 843 (1880)
|+.||.+||+|++.|+++|++++++.+|++++|++|.|||+|||++|.+....+... ..+......+......+.
T Consensus 1 Vv~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 1 VVDPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-----SENSNDESTDISLPMMGI 75 (160)
T ss_pred CcchHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-----cccccccchhhHHhhccC
Confidence 578999999999999999999999999999999999999999999986654111000 000000000110011111
Q ss_pred CCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHH
Q 000194 844 WPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKL 923 (1880)
Q Consensus 844 ~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l 923 (1880)
.++.++||+++++++|+++|+|++++++|.++++|++.||+++|.+|+||+++|+|.+++++++++++++|+++++|
T Consensus 76 ---~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 76 ---SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 000194 924 GTLVSIVR 931 (1880)
Q Consensus 924 ~~lv~~~~ 931 (1880)
+.++.++|
T Consensus 153 ~~lv~ivk 160 (160)
T PF11865_consen 153 ADLVSIVK 160 (160)
T ss_pred HHHHHHhC
Confidence 99998764
No 17
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.86 E-value=6.6e-18 Score=193.73 Aligned_cols=562 Identities=12% Similarity=0.137 Sum_probs=360.6
Q ss_pred HHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHH
Q 000194 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEK 564 (1880)
Q Consensus 485 Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 564 (1880)
++..+..++........++...+..--+.....+..++..+|+......- .+...+..+-++-.
T Consensus 117 l~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~----------------Pe~li~~sN~il~a 180 (858)
T COG5215 117 LLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA----------------PEDLIQMSNVILFA 180 (858)
T ss_pred HHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC----------------HHHHHHHhhHHHHH
Confidence 34444444443333344555544433333344566667777877664321 00122333333333
Q ss_pred HHHHHh-cCCChhHHHHHHHhccCC-----CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH
Q 000194 565 LLIAAV-ADADVTVRHSIFSSLYGN-----RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1880)
Q Consensus 565 Ll~~~~-~d~~~~vR~~~l~~l~~~-----~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1880)
++.-+. ++++..||.+++.+|-+. ..|...-...-+++....+-+-++.+++.+|+-++.++...+-....|++
T Consensus 181 iv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym 260 (858)
T COG5215 181 IVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM 260 (858)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333 578999999999998420 01110000011334444556777899999999999999887765566777
Q ss_pred HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhC--cccc---------c------CchHHHHHHHHHHhcc--CCCCC
Q 000194 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC--ERLI---------R------PYIAPIHKALVARLLE--GTGIN 699 (1880)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~--~~~~---------~------py~~~il~~ll~~l~~--~~~~~ 699 (1880)
.+.|..+......+ +..++..+|.+....+++.- +... + .-+..+++.++..+.. ++..+
T Consensus 261 E~aL~alt~~~mks-~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~ 339 (858)
T COG5215 261 ENALAALTGRFMKS-QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG 339 (858)
T ss_pred HHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 77777766666666 56677778888887776421 1111 1 1145678888887764 22223
Q ss_pred CChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc-cccCCcchHHHHHH
Q 000194 700 ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLL 778 (1880)
Q Consensus 700 ~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~-i~p~~~~p~ll~~L 778 (1880)
.+.++.-++..|+...++..|+.+.. .++..+-+.++.. ++..|++|+.++|.+...-..+ .+||. |+.++.+
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~i~~---pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V--~qalp~i 413 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDKIMR---PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV--PQALPGI 413 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhHhHH---HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH--HhhhHHH
Confidence 46777778888999999988875433 2555555666644 6889999999999987654443 35553 7888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcc-----cCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCccc
Q 000194 779 LKMLNGELVWSTRREVLKVLGIMGA-----LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDY 853 (1880)
Q Consensus 779 l~~L~~~~~~~vr~~~l~~lg~lga-----ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 853 (1880)
.+... +..--++..+..|+|.+.. ++|-. +
T Consensus 414 ~n~m~-D~~l~vk~ttAwc~g~iad~va~~i~p~~--------------------------------------------H 448 (858)
T COG5215 414 ENEMS-DSCLWVKSTTAWCFGAIADHVAMIISPCG--------------------------------------------H 448 (858)
T ss_pred HHhcc-cceeehhhHHHHHHHHHHHHHHHhcCccc--------------------------------------------c
Confidence 88776 4455677888899888752 22211 1
Q ss_pred chHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCC-------CCCCCcchhhHHHHHHHhc--CCcchhHHHHHHHH
Q 000194 854 YSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL-------GCVPYLPKVLPDLFHTVRT--CDDYLKDYITWKLG 924 (1880)
Q Consensus 854 ~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~-------~~~~~l~~iip~ll~~l~~--~~~~~~~~~~~~l~ 924 (1880)
.+. .+.+++..|.|....+ ..+.-+.+.++.++.+ ...+|.+.|+..++..-.. .+.+.|...|..||
T Consensus 449 l~~-~vsa~liGl~D~p~~~--~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLg 525 (858)
T COG5215 449 LVL-EVSASLIGLMDCPFRS--INCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALG 525 (858)
T ss_pred ccH-HHHHHHhhhhccchHH--hhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 112 2233334455543221 1334444444444322 1234555555555554332 23458999999999
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHhhcCC----C----C-CcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHh
Q 000194 925 TLVSIVRQHIRKYLQELFSLISELWSSF----S----L-PATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQV 995 (1880)
Q Consensus 925 ~lv~~~~~~i~~y~~~i~~~i~~~~~~~----~----~-~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~ 995 (1880)
+++....+.+.+.+-.+.+.+.+.+... . . ....-+.++..++.+++++.+..+.++.+--.+++.+++++
T Consensus 526 tli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~ 605 (858)
T COG5215 526 TLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI 605 (858)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 9999877766655554444444333221 0 0 00011234557889999999999999999999999999999
Q ss_pred cccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHH
Q 000194 996 LSDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHH 1072 (1880)
Q Consensus 996 l~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~ 1072 (1880)
|+..+.+.-..-+.-.++++. ++++.|+.|+..++|.+.+.+.. ....+-..|+..+|+|++. .+|.+|...++..
T Consensus 606 les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df~~y~d~~ms~ 684 (858)
T COG5215 606 LESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSS 684 (858)
T ss_pred HhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 976422211111223334443 36778999999999999999832 3556778999999999997 6799999999999
Q ss_pred HHHhhCCCC--HHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhCC
Q 000194 1073 LKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHR 1118 (1880)
Q Consensus 1073 l~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~~~~ 1118 (1880)
|...|+++. .++|++++.+++.++..+|.+|.+|+..|.-.+.+..
T Consensus 685 LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 685 LVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 999998764 6899999999999999999999999999999888753
No 18
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.75 E-value=3.6e-13 Score=159.32 Aligned_cols=725 Identities=17% Similarity=0.185 Sum_probs=415.1
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~ 190 (1880)
|...|..++.+.-|.+-+..-.++++++.-.-+...-.||...+-.+-.++- +.+--+|..+-.++.-|+..|+-
T Consensus 400 fnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvVieplli-ded~yar~egreIisnLakaaGl---- 474 (1172)
T KOG0213|consen 400 FNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI-DEDYYARVEGREIISNLAKAAGL---- 474 (1172)
T ss_pred HHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeeccee-cchHHHhhchHHHHHHHHHHhhh----
Confidence 4455555565544555566677778777664222222233222211112221 23335667777788888776552
Q ss_pred chHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000194 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1880)
Q Consensus 191 ~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1880)
..++..+-.-+-..++.||..++.|++.+.+.+. ++.++|-+....++..+|..||.++.+...+...
T Consensus 475 --a~mistmrpDidn~deYVRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail 542 (1172)
T KOG0213|consen 475 --ATMISTMRPDIDNKDEYVRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAIL 542 (1172)
T ss_pred --HHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHH
Confidence 2333334444456678999999999988766544 2333333333334554699999999999999887
Q ss_pred chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCc--chHHHHHHHH
Q 000194 271 TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAER--DSGFIALGEM 348 (1880)
Q Consensus 271 ~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r--~~a~~alg~l 348 (1880)
.|-...||+..+++.+-..+.+++..||-.+..++..+|+.+..-=.+ .++.++-.|-.-++...-+ .+-+.|+|-+
T Consensus 543 ~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie-~fDsVlkpLwkgir~hrgk~laafLkAigyl 621 (1172)
T KOG0213|consen 543 SGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIE-QFDSVLKPLWKGIRQHRGKELAAFLKAIGYL 621 (1172)
T ss_pred hcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHccChHHHHHHHHHhhc
Confidence 777889999999998888889999999999999999999765431111 2355554444444322222 2344555655
Q ss_pred Hhhchhhhhh-hhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHH
Q 000194 349 AGALDGELFH-YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITV 426 (1880)
Q Consensus 349 a~~v~~~~~p-~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~-~ll~~l~~~~ls~~l~~~l~~i~~ 426 (1880)
+--...+-.. |-..+|-.+...+..++......++..+..+|...|-+ ..|+. +++|..|.+--...+ ++
T Consensus 622 iplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~y~r~dilp~ff~~fw~rrm--A~----- 693 (1172)
T KOG0213|consen 622 IPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PAYIRFDILPEFFFSFWGRRM--AL----- 693 (1172)
T ss_pred cccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HHHHhhhhhHHHHhhhhhhhh--hc-----
Confidence 5444433332 33456766666554433222234667777777766642 22444 566666643100000 00
Q ss_pred hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHH
Q 000194 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506 (1880)
Q Consensus 427 ~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~ 506 (1880)
....+.+ ..+. ++..| +-+|+ .+.+..+
T Consensus 694 ---------------------drr~ykq---------------------lv~t-tv~ia-~KvG~--------~~~v~R~ 721 (1172)
T KOG0213|consen 694 ---------------------DRRNYKQ---------------------LVDT-TVEIA-AKVGS--------DPIVSRV 721 (1172)
T ss_pred ---------------------cccchhh---------------------HHHH-HHHHH-HHhCc--------hHHHHHH
Confidence 0000000 0000 01111 11221 1344455
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCC--hhHHH----H
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADAD--VTVRH----S 580 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~--~~vR~----~ 580 (1880)
+..|- ++.+..|+.++.+..+++...... .+ -.++...++..++.+ +.+.+ ..|.. .
T Consensus 722 v~~lk-de~e~yrkm~~etv~ri~~~lg~~----di-----------derleE~lidgil~A-fqeqtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 722 VLDLK-DEPEQYRKMVAETVSRIVGRLGAA----DI-----------DERLEERLIDGILYA-FQEQTTEDSVMLLGFGT 784 (1172)
T ss_pred hhhhc-cccHHHHHHHHHHHHHHHhccccc----cc-----------cHHHHHHHHHHHHHH-HHhcccchhhhhhhHHH
Confidence 55543 456778888888888877543210 01 123333344444433 33322 22222 3
Q ss_pred HHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc----ccHHHHHHHHHHHHHHhcCCCCh
Q 000194 581 IFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY----VLPALRRHLIQLLTYLEQSSADN 656 (1880)
Q Consensus 581 ~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~----v~p~l~~~l~~~l~~l~~~~~~~ 656 (1880)
+..+|. .+.-+|+ +.++..+...|+.+++.||+.|.+++++++...... .+.++.-+|.+.+ .. ..+
T Consensus 785 V~~~lg--~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl----ge-eyp 855 (1172)
T KOG0213|consen 785 VVNALG--GRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL----GE-EYP 855 (1172)
T ss_pred HHHHHh--hccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc----Cc-ccH
Confidence 455554 3444566 456888889999999999999999999988754322 2223332222222 22 344
Q ss_pred HhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchh--hhHHhHHHH
Q 000194 657 KCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMR--QYISELMPL 733 (1880)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~--~~~~~l~p~ 733 (1880)
+.-...+.++..|....+ ....|=+..+++.+.|.|++. ...|..+.+.-+|.++..+++.+. .++. +-=.
T Consensus 856 EvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-----heKVqen~IdLvg~IadrgpE~v~aREWMR-Icfe 929 (1172)
T KOG0213|consen 856 EVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-----HEKVQENCIDLVGTIADRGPEYVSAREWMR-ICFE 929 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-----HHHHHHHHHHHHHHHHhcCcccCCHHHHHH-HHHH
Confidence 444444444555554433 224555788999999999975 778888888899999988776432 2222 2222
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhcc
Q 000194 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ 813 (1880)
Q Consensus 734 l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~ 813 (1880)
+++.|.. +..+.|.+|..+||-+++..|.. ++|..|++-|+..+ ...|.-+--+|+++|
T Consensus 930 LlelLka-hkK~iRRaa~nTfG~IakaIGPq--------dVLatLlnnLkvqe-Rq~RvcTtvaIaIVa----------- 988 (1172)
T KOG0213|consen 930 LLELLKA-HKKEIRRAAVNTFGYIAKAIGPQ--------DVLATLLNNLKVQE-RQNRVCTTVAIAIVA----------- 988 (1172)
T ss_pred HHHHHHH-HHHHHHHHHHhhhhHHHHhcCHH--------HHHHHHHhcchHHH-HHhchhhhhhhhhhh-----------
Confidence 3344443 24568899999999999887752 68889998887542 223322211222221
Q ss_pred ccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCC
Q 000194 814 QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC 893 (1880)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~ 893 (1880)
+-.-+-.|+++||.--+-|.. .++..+..|+..+|+..|...
T Consensus 989 -------------------------------------E~c~pFtVLPalmneYrtPe~-nVQnGVLkalsf~Feyigems 1030 (1172)
T KOG0213|consen 989 -------------------------------------ETCGPFTVLPALMNEYRTPEA-NVQNGVLKALSFMFEYIGEMS 1030 (1172)
T ss_pred -------------------------------------hhcCchhhhHHHHhhccCchh-HHHHhHHHHHHHHHHHHHHHh
Confidence 001123577888877777765 456799999999999999888
Q ss_pred CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 894 ~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
..|+-.+.|.+-..+.+.+...|......+.-++-.+ .---..+.++.++.-.|.+.-.+... ....+..+++.+
T Consensus 1031 kdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~--~g~g~eda~iHLLN~iWpNIle~sPh---viqa~~e~~eg~ 1105 (1172)
T KOG0213|consen 1031 KDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV--PGTGCEDALIHLLNLIWPNILETSPH---VIQAFDEAMEGL 1105 (1172)
T ss_pred hhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC--CCcCcHHHHHHHHHHhhhhhcCCChH---HHHHHHHHHHHH
Confidence 8999999999999998877766766554332222110 00112455666667677764322111 122567788888
Q ss_pred HHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHH
Q 000194 974 CLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE 1016 (1880)
Q Consensus 974 ~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~ 1016 (1880)
..++|.. .++..+++-|-++.+. -|....++...+.
T Consensus 1106 r~~Lg~~------~~~~Y~~QGLFHPark-VR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1106 RVALGPQ------AMLKYCLQGLFHPARK-VRKRYWTVYNSMY 1141 (1172)
T ss_pred HHHhchH------HHHHHHHHhccCcHHH-HHHHHHHHHHhHh
Confidence 8888764 2455566666554322 2334445554443
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.72 E-value=1.2e-12 Score=154.94 Aligned_cols=549 Identities=16% Similarity=0.190 Sum_probs=337.7
Q ss_pred CChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhh----cCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH
Q 000194 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWL----RGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA 198 (1880)
Q Consensus 123 ~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l----~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~ 198 (1880)
.|+-|+..++.+++-.+.+-| ++.++.+| ++.++|..||.++.+..++|.-.+-...||+..++..
T Consensus 488 ~deYVRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~i 557 (1172)
T KOG0213|consen 488 KDEYVRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKI 557 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHH
Confidence 467899999999998888744 22233333 2566899999999999999999888889999999999
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHH
Q 000194 199 IWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSR 278 (1880)
Q Consensus 199 i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~ 278 (1880)
|-.+|.|.+..||-.++.|++.+++... .....-+..++.-+-.|+.++.. ..-.+-+.|+|.|+--+...-..|
T Consensus 558 i~~gl~De~qkVR~itAlalsalaeaa~----Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~y 632 (1172)
T KOG0213|consen 558 IEHGLKDEQQKVRTITALALSALAEAAT----PYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASY 632 (1172)
T ss_pred HHHhhcccchhhhhHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHH
Confidence 9999999999999999999998876533 34556677777777777766532 234444557777765443333333
Q ss_pred H-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC---CCc---chHHHHHHHHHh
Q 000194 279 Y-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP---AER---DSGFIALGEMAG 350 (1880)
Q Consensus 279 ~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~---~~r---~~a~~alg~la~ 350 (1880)
| .+++-.+.+-+++++...++.++.++.+.|.-.+.+ +.|+ .+++|.++.....- -+| ..-..+-..+|.
T Consensus 633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~--~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE--PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC--HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 3 356667777788999999999999999988755432 2244 46667666554321 122 133445556788
Q ss_pred hchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCC-CchHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhC
Q 000194 351 ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVR-GLLDIMFSAGLSTTLVDALEQITVSI 428 (1880)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~-~~~~~l~-~ll~~l~~~~ls~~l~~~l~~i~~~~ 428 (1880)
.+|. .+++..+...+.+....-+.-+.+.+..+...+|. +|..-+. .+++.
T Consensus 711 KvG~------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidg--------------------- 763 (1172)
T KOG0213|consen 711 KVGS------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDG--------------------- 763 (1172)
T ss_pred HhCc------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH---------------------
Confidence 8886 23444444444222111112245555555555554 3332221 22222
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCC--CcchhhHH
Q 000194 429 PSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKG--HDLLEFAR 504 (1880)
Q Consensus 429 p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~~~~--~~l~~~v~ 504 (1880)
|...+..+. . ++ ..-|..+|.+ .|.+ ....|.+.
T Consensus 764 --------------il~Afqeqt------------------------t-~d---~vml~gfg~V~~~lg~r~kpylpqi~ 801 (1172)
T KOG0213|consen 764 --------------ILYAFQEQT------------------------T-ED---SVMLLGFGTVVNALGGRVKPYLPQIC 801 (1172)
T ss_pred --------------HHHHHHhcc------------------------c-ch---hhhhhhHHHHHHHHhhccccchHHHH
Confidence 111110000 0 00 0011111111 1211 12234455
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
..++..+.+..+.||..|+..|+.+..-- ..| . + ......++-| +--.+.+..|+|--+++.+
T Consensus 802 stiL~rLnnksa~vRqqaadlis~la~Vl-ktc-----~-----e--e~~m~~lGvv----LyEylgeeypEvLgsILgA 864 (1172)
T KOG0213|consen 802 STILWRLNNKSAKVRQQAADLISSLAKVL-KTC-----G-----E--EKLMGHLGVV----LYEYLGEEYPEVLGSILGA 864 (1172)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHH-Hhc-----c-----H--HHHHHHhhHH----HHHhcCcccHHHHHHHHHH
Confidence 56678899999999999999888775311 111 0 0 0011111211 1123456677777777666
Q ss_pred ccC-------CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH-HHHHHHHHHHHHhcCCCCh
Q 000194 585 LYG-------NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA-LRRHLIQLLTYLEQSSADN 656 (1880)
Q Consensus 585 l~~-------~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~-l~~~l~~~l~~l~~~~~~~ 656 (1880)
+.. ...+-| -.++++.|.-.|...+..|+..+++++|+++...|.++.+. ..++...++..|... ..
T Consensus 865 ikaI~nvigm~km~pP---i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah--kK 939 (1172)
T KOG0213|consen 865 IKAIVNVIGMTKMTPP---IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH--KK 939 (1172)
T ss_pred HHHHHHhccccccCCC---hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH--HH
Confidence 631 111111 12578888888889999999999999999999999887642 233455566656543 45
Q ss_pred HhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH
Q 000194 657 KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1880)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~ 736 (1880)
..|..|...+|.|++..++ ..++..|+..|+-. +...+.+.-.+|+..++.+|. -.++|.++.
T Consensus 940 ~iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvq-----eRq~RvcTtvaIaIVaE~c~p------FtVLPalmn 1002 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQ-----ERQNRVCTTVAIAIVAETCGP------FTVLPALMN 1002 (1172)
T ss_pred HHHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHH-----HHHhchhhhhhhhhhhhhcCc------hhhhHHHHh
Confidence 6788999999999998762 56777888777643 223333334456667776664 246777776
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000194 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1880)
Q Consensus 737 ~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~ 800 (1880)
--.-+ +..+..-.+++|+-+.+++|..-.-|.. .+.+.|-..|.+ .+..-|.-+..++.-
T Consensus 1003 eYrtP-e~nVQnGVLkalsf~FeyigemskdYiy--av~PlleDAlmD-rD~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1003 EYRTP-EANVQNGVLKALSFMFEYIGEMSKDYIY--AVTPLLEDALMD-RDLVHRQTAMNVIKH 1062 (1172)
T ss_pred hccCc-hhHHHHhHHHHHHHHHHHHHHHhhhHHH--HhhHHHHHhhcc-ccHHHHHHHHHHHHH
Confidence 55433 3457777899999999999875444432 456666666643 355556666555543
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.69 E-value=7.2e-12 Score=171.76 Aligned_cols=719 Identities=14% Similarity=0.092 Sum_probs=380.2
Q ss_pred CCCCHHHHHHHHHHHcCC--C-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHH---HHHHHHhhhcCCChhhhhhHHHH
Q 000194 19 GGGSLDALNRILADLCTH--G-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQ---LYDRISGLLESNDAAENLGALRA 92 (1880)
Q Consensus 19 ~~~~~~~~~~l~~~l~s~--~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~---l~~~i~~l~~s~~~~~r~~~i~a 92 (1880)
..++...+..++++|++. + ++++.|+.+|+.+.+.. .+ .++++-+ ....+..++++.+...|.-++.+
T Consensus 8 ~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~-----~e-nR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaa 81 (2102)
T PLN03200 8 PDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTR-----EE-ARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAV 81 (2102)
T ss_pred ccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcC-----hH-HHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 356678899999999976 3 34445888888887322 22 3444422 45666677888888788777777
Q ss_pred HhHhhccccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCC--Cchh-HH-HHHHHHHHhhhcCC-C
Q 000194 93 IDELIDVALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGA--MTAD-EV-EFQVKMALDWLRGD-R 165 (1880)
Q Consensus 93 i~~Li~~~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~--~~~~-~v-~~~~~~~~~~l~~~-~ 165 (1880)
+..|-..+ +...++. -..+.|..++. ..+.+..+.|+.+|..|+..+.. .... .+ ...++.+++.+++. +
T Consensus 82 L~nLS~~e--~nk~~Iv~~GaIppLV~LL~-sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk 158 (2102)
T PLN03200 82 LGVLCKEE--DLRVKVLLGGCIPPLLSLLK-SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK 158 (2102)
T ss_pred HHHHhcCH--HHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch
Confidence 77774332 2222222 22345666665 45899999999999999876411 1101 11 23455555556532 1
Q ss_pred cc-hhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHH
Q 000194 166 VE-YRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFE 242 (1880)
Q Consensus 166 ~~-~~R~aA~~~l~~la~~~p~~l~~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~~l~ 242 (1880)
.+ ..+..|+.+|..|+.+....-..-+ ...+|.+...|.++++.++..|+.++...+.. .+. .+.... ...+|
T Consensus 159 ~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass---~ee-~~~aVIeaGaVP 234 (2102)
T PLN03200 159 QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMA---FES-SISKVLDAGAVK 234 (2102)
T ss_pred hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---ChH-HHHHHHHCCCHH
Confidence 11 2344567788888876544311111 24778888899999999999998877654321 111 111111 23455
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcc---------hhHHHHHHHHHhHhHhhhC
Q 000194 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHR---------DRLVRLSITSLLPRIAHFL 312 (1880)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~---------~~~Vr~~~~~~i~~la~~~ 312 (1880)
.+..-+.+.++..++..|+.+|+.|...+.++-..-.+ ..++.++..+..+ +...++.++++++.+|...
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 56665654333467888888888887643321111000 1122333333222 2334555666666655321
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 313 RDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 313 ~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
..++++|...+...++......++|.++..+.. ++.-.+.++ .+. ...+..++..+++.
T Consensus 315 ---------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l-----~d~~~~~~~-~i~------~~~v~~~LV~Llr~ 373 (2102)
T PLN03200 315 ---------SALILYLGELSESPRSPAPIADTLGALAYALMV-----FDSSAESTR-AFD------PTVIEQILVKLLKP 373 (2102)
T ss_pred ---------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh-----cCCchhhhh-hcc------ccccHHHHHHHhCC
Confidence 234444444444333322222222222211100 000000000 000 00111122222211
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000194 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1880)
Q Consensus 393 ~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1880)
++-.+....+.+.|-..--++.+...+.+
T Consensus 374 --k~p~~vqe~V~eALasl~gN~~l~~~L~~------------------------------------------------- 402 (2102)
T PLN03200 374 --RDTKLVQERIIEALASLYGNAYLSRKLNH------------------------------------------------- 402 (2102)
T ss_pred --CCCchhHHHHHHHHHHhcCChHHHHHHHh-------------------------------------------------
Confidence 11000001111111000000000000000
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCcccccccc
Q 000194 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1880)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1880)
.=....++.++...+.+++..++.++..+.....+.
T Consensus 403 ----------------------------~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~---------------- 438 (2102)
T PLN03200 403 ----------------------------AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGL---------------- 438 (2102)
T ss_pred ----------------------------ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHH----------------
Confidence 000112334555556667766666655544221100
Q ss_pred chhHH-HHHHHHHHHHHHhcCCChhHHHHHHHhcc---CCCCc-chhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhh
Q 000194 553 KRRRL-IEELVEKLLIAAVADADVTVRHSIFSSLY---GNRGF-DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLS 627 (1880)
Q Consensus 553 ~~~~~-~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~---~~~~f-d~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~ 627 (1880)
...+ -...++.|+.. +..++..++..++..++ ..... -..+.....++.|..+|..++..+|+.|+++|+.++
T Consensus 439 -~~aIi~~ggIp~LV~L-L~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 439 -WEALGGREGVQLLISL-LGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC 516 (2102)
T ss_pred -HHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 0000 01123333332 34456677776665552 11100 011223456889999999999999999999999999
Q ss_pred cCCcccccHHHH--HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHH
Q 000194 628 EKNPAYVLPALR--RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGII 705 (1880)
Q Consensus 628 ~~~p~~v~p~l~--~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~ 705 (1880)
...+ .+...+. ..+..++.-+ .+ ++.+.++.|++.|..++..... ..++.++..+..+ ++.+.
T Consensus 517 ~~~~-qir~iV~~aGAIppLV~LL-~s-gd~~~q~~Aa~AL~nLi~~~d~-------~~I~~Lv~LLlsd-----d~~~~ 581 (2102)
T PLN03200 517 CHSE-DIRACVESAGAVPALLWLL-KN-GGPKGQEIAAKTLTKLVRTADA-------ATISQLTALLLGD-----LPESK 581 (2102)
T ss_pred CCcH-HHHHHHHHCCCHHHHHHHH-hC-CCHHHHHHHHHHHHHHHhccch-------hHHHHHHHHhcCC-----ChhHH
Confidence 8532 1111111 1122233333 34 5788999999999999876432 2234455555543 56777
Q ss_pred HHHHHHHHHHHHhcCCc-hhhh---HHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHH
Q 000194 706 SGVLVTVGDLARVGGFG-MRQY---ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1880)
Q Consensus 706 ~~~~~~l~~La~~~g~~-~~~~---~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1880)
..++.++|.+....... +..- ....+|.+.+.+..+ +...++.|+++|+.++............ -..++-|+..
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~-agaIpPLV~L 659 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLAT-DEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHH
Confidence 78888888876644331 1111 135788999988866 5678888999999998755332111111 1345566666
Q ss_pred hcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccc-hHHHHH
Q 000194 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYY-STVAIN 860 (1880)
Q Consensus 782 L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~vi~ 860 (1880)
|++. +.++++++..+|+.+..- .... ...++ ..-+++
T Consensus 660 Lss~-~~~v~keAA~AL~nL~~~--~~~~---------------------------------------q~~~~v~~GaV~ 697 (2102)
T PLN03200 660 LTNN-TEAVATQSARALAALSRS--IKEN---------------------------------------RKVSYAAEDAIK 697 (2102)
T ss_pred HhcC-ChHHHHHHHHHHHHHHhC--CCHH---------------------------------------HHHHHHHcCCHH
Confidence 6554 567899999998876420 0000 00011 123567
Q ss_pred HHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC-cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 000194 861 SLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI 929 (1880)
Q Consensus 861 ~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~-l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~ 929 (1880)
.|++.|++++. .....+..++..++..-... ... -...+|.+...++..++..|+.+...|..+...
T Consensus 698 pL~~LL~~~d~-~v~e~Al~ALanLl~~~e~~-~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 698 PLIKLAKSSSI-EVAEQAVCALANLLSDPEVA-AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHHHhCCCh-HHHHHHHHHHHHHHcCchHH-HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 78899988764 44567888888888754222 111 146689999999999999999999888877753
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.65 E-value=6.9e-12 Score=171.95 Aligned_cols=748 Identities=16% Similarity=0.158 Sum_probs=403.6
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCchhHH---HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC--ccchhchHHHHHH
Q 000194 124 DREILVLASKVLGHLARAGGAMTADEV---EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS--TVFNVHVAEFVDA 198 (1880)
Q Consensus 124 d~~v~~~aa~~l~~L~~~~g~~~~~~v---~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p--~~l~~~l~~i~~~ 198 (1880)
..+..+.|...+..|++.+... -.++ ...++.++..|..+ +...|.-|+.++..++.... ..+. ....+|.
T Consensus 28 s~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg-~~~vk~nAaaaL~nLS~~e~nk~~Iv--~~GaIpp 103 (2102)
T PLN03200 28 SPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSG-TLGAKVNAAAVLGVLCKEEDLRVKVL--LGGCIPP 103 (2102)
T ss_pred CHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCHHHHHHHH--HcCChHH
Confidence 3555666666666666643111 1111 11355555566543 34456666677777876521 1111 2567777
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH--HHHHHHHHhhccCCCChh--HHHHHHHHHHHHHHcchhh
Q 000194 199 IWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPVH--SIHGSLLAVGELLRNTGEF 274 (1880)
Q Consensus 199 i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~~l~~~~~~l~~~~~~~--~~~~al~~l~~ll~~~~~~ 274 (1880)
++..|++.++..|+.|+.||..+...-. .+. .+.... ...+|.+..-+.+.+..+ .+..++.+|..|....+.+
T Consensus 104 LV~LL~sGs~eaKe~AA~AL~sLS~~~~-~D~-~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~ 181 (2102)
T PLN03200 104 LLSLLKSGSAEAQKAAAEAIYAVSSGGL-SDH-VGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGF 181 (2102)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHcCcc-hhh-hhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccch
Confidence 8888888899999999999987654210 010 111111 223444444444432111 2344456777777654433
Q ss_pred hHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC---CcchHHHHHHHHH
Q 000194 275 MMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA---ERDSGFIALGEMA 349 (1880)
Q Consensus 275 ~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~---~r~~a~~alg~la 349 (1880)
-..-.+ ..++.++..+++.++.+|..++.++..++...++. .+.-+ ...+|.|...|++.. .|..|..+|++|+
T Consensus 182 ~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~-~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLA 260 (2102)
T PLN03200 182 WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS-ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALS 260 (2102)
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHh
Confidence 222112 25667778888899999999999998888664431 11112 356888888886532 4788999999998
Q ss_pred hhchhhhhhhh--hHHHHHHHHhhcCCCCC---------CCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHH
Q 000194 350 GALDGELFHYL--PTITSHLREAIAPRRGK---------PSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLV 418 (1880)
Q Consensus 350 ~~v~~~~~p~l--~~i~~~l~~~l~~~~~~---------~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~ 418 (1880)
....+ ....+ ...++.+.+.+...... ....+.-+++.|+... +.+.|++..++.. +.....+.
T Consensus 261 s~s~e-~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~-~~ll~~L~~ll~s---~rd~~~~a 335 (2102)
T PLN03200 261 SQSKE-AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM-SALILYLGELSES---PRSPAPIA 335 (2102)
T ss_pred cCCHH-HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-hhhHHHHHHhhcc---cchHHHHH
Confidence 64322 11111 11233344444221111 1245666777766432 1233333322210 00000000
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCc
Q 000194 419 DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHD 498 (1880)
Q Consensus 419 ~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~ 498 (1880)
++...++ .++.. +.+. +. ...+ +...
T Consensus 336 da~gALa------------yll~l----~d~~---------------------------~~--~~~~--------i~~~- 361 (2102)
T PLN03200 336 DTLGALA------------YALMV----FDSS---------------------------AE--STRA--------FDPT- 361 (2102)
T ss_pred HHHhhHH------------HHHHh----cCCc---------------------------hh--hhhh--------cccc-
Confidence 1000000 00000 0000 00 0000 0000
Q ss_pred chhhHHHHHhhhccCCChHH-HHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhH
Q 000194 499 LLEFARDSVVLYLDDEDKAT-RKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTV 577 (1880)
Q Consensus 499 l~~~v~~~~~~~l~~~~~~V-R~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~v 577 (1880)
-+...+..++.+.++.+ ...++.++..++.+ +..
T Consensus 362 ---~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN------------------------------------------~~l 396 (2102)
T PLN03200 362 ---VIEQILVKLLKPRDTKLVQERIIEALASLYGN------------------------------------------AYL 396 (2102)
T ss_pred ---ccHHHHHHHhCCCCCchhHHHHHHHHHHhcCC------------------------------------------hHH
Confidence 01112223333332221 21122222221110 000
Q ss_pred HHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChH
Q 000194 578 RHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1880)
Q Consensus 578 R~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1880)
-..+...+.++.|+..+.-.+.++|..++..|..++..++....-....-..+.|-.+..+ ++..
T Consensus 397 --------------~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-~s~~ 461 (2102)
T PLN03200 397 --------------SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL-SSEQ 461 (2102)
T ss_pred --------------HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-CCHH
Confidence 0111122446667777777778899999999998887765432211211112223333333 4677
Q ss_pred hHHHHHHHHHHHHHhCcccccCch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH--hHHHHH
Q 000194 658 CREESAKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLI 734 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~l~p~l 734 (1880)
.++.|++.|+.++....+.....+ ...++.|++.++.+ +..++..++.+++.++.. .++....+. ..+|.+
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-----~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppL 535 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-----SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPAL 535 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHH
Confidence 888999999999864432221111 13566777777754 678999999999998863 334455452 578999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 735 ~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
++.|.+. +...++.|+++|..++..... ..++.+..+|..+ ++.++..+++++|.+..+-.......
T Consensus 536 V~LL~sg-d~~~q~~Aa~AL~nLi~~~d~---------~~I~~Lv~LLlsd-d~~~~~~aL~vLgnIlsl~~~~d~~~-- 602 (2102)
T PLN03200 536 LWLLKNG-GPKGQEIAAKTLTKLVRTADA---------ATISQLTALLLGD-LPESKVHVLDVLGHVLSVASLEDLVR-- 602 (2102)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHhccch---------hHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhcchhHHHH--
Confidence 9999876 577889999999999765322 2345566666554 56788888888887743211110000
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCC-
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC- 893 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~- 893 (1880)
.. .. ..-.++.|..+|+.++. ..+..++.++..++..-...+
T Consensus 603 --------------------------~g-------~~---~~ggL~~Lv~LL~sgs~-~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 603 --------------------------EG-------SA---ANDALRTLIQLLSSSKE-ETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred --------------------------Hh-------hh---ccccHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCChHHHH
Confidence 00 00 01246778888887764 455677788888876322211
Q ss_pred CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 894 ~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
.--....+|.++..++..+...+....+.|+.+.....+.=+ ..+++
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~-------------------------------~~~v~-- 692 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK-------------------------------VSYAA-- 692 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHH-------------------------------HHHHH--
Confidence 122357788888888888777777777777766642211100 00000
Q ss_pred HHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHH---hcchhhhh-hhhHHHHHHhhcCCCcHHHHHHH
Q 000194 974 CLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVF---GGTLDEHM-HLLLPALIRLFKVDAPVDIRRAA 1049 (1880)
Q Consensus 974 ~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~---g~~~~~~~-~~ilp~l~~~l~~~~~~~vr~~a 1049 (1880)
...+|++++.|++.+ ......++.++..+ ++...+.. .-.+|++++++..+ +...|+.|
T Consensus 693 ------------~GaV~pL~~LL~~~d----~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~A 755 (2102)
T PLN03200 693 ------------EDAIKPLIKLAKSSS----IEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNA 755 (2102)
T ss_pred ------------cCCHHHHHHHHhCCC----hHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHH
Confidence 123455666664421 22333333333332 22222222 34689999999876 68899999
Q ss_pred HHHHHhhcccccccc----h--hHhHHHHHHHhhCCCCHHHHHH--HHHHHHHHHHH-hcccc
Q 000194 1050 IETLTRLIPRVQVTG----H--ISSLVHHLKLVLDGKNDELRKD--AVDALCCLAHA-LGEDF 1103 (1880)
Q Consensus 1050 i~~l~~l~~~~~~~~----~--~~~ii~~l~~~l~~~~~~l~~~--al~~L~~l~~~-~g~~f 1103 (1880)
..+|..|+.+-...+ + ...++.+|...|+..|.+.... ++++|..++.. .|..|
T Consensus 756 a~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~ 818 (2102)
T PLN03200 756 ARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANF 818 (2102)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCC
Confidence 999999998754333 3 2356888999999888766665 99999999884 34444
No 22
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=3.6e-12 Score=163.34 Aligned_cols=587 Identities=16% Similarity=0.163 Sum_probs=345.2
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchh---HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCC
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENAS---KVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAM 145 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~---~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~-g~~ 145 (1880)
+.+.+..++.+++++.|+|+..=+-+++.-. |..++ +......-...++ .++|.=+-+.|++.+|-.=+.| +..
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l-~~~~~v~l~~~eI~~aF~~~L-sd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYL-GQQPEVVLMLKEIQEAFSHLL-SDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh-ccCchhhhccHHHHHHHHHHh-cccHHHHHHHHhcCceEEEecCCchh
Confidence 3445667888999999999988887887665 32222 2222222233333 2455555566666554322222 222
Q ss_pred chhHHHHHHHHHHhh-----------------------------------------------------hcCCCcchhHHH
Q 000194 146 TADEVEFQVKMALDW-----------------------------------------------------LRGDRVEYRRFA 172 (1880)
Q Consensus 146 ~~~~v~~~~~~~~~~-----------------------------------------------------l~~~~~~~~R~a 172 (1880)
..++|+.+++.+.+. -.....|+-|.+
T Consensus 897 k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~G 976 (1702)
T KOG0915|consen 897 KKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKG 976 (1702)
T ss_pred HHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccc
Confidence 233333333332211 012345778999
Q ss_pred HHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCC
Q 000194 173 AVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA 252 (1880)
Q Consensus 173 A~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~ 252 (1880)
|...++.|+..+...+.||+++++|.+..-=-||++.||.+-..--+.+. . ........++..++++++.++.+.
T Consensus 977 aAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li---~-D~k~~vd~y~neIl~eLL~~lt~k- 1051 (1702)
T KOG0915|consen 977 AAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALI---T-DSKKVVDEYLNEILDELLVNLTSK- 1051 (1702)
T ss_pred hhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhc---c-ChHHHHHHHHHHHHHHHHHhccch-
Confidence 99999999999999999999999999999888999999887655434332 2 112245578899999999999987
Q ss_pred ChhHHHHHHHHHHHHHHcc-hhhhHHHHHHHHHHHHHHhhcchhHHHHHH---HHHhHhHhh----hChhhHHHHHHHHH
Q 000194 253 PVHSIHGSLLAVGELLRNT-GEFMMSRYREVAEIVLRYLEHRDRLVRLSI---TSLLPRIAH----FLRDRFVTNYLKIC 324 (1880)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~-~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~---~~~i~~la~----~~~~~f~~~yl~~~ 324 (1880)
.|++|.++++||..|+++. .+.+.+++.+++..+++.+++=...||+++ +.+++.++. .....=.+..++.+
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~i 1131 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDII 1131 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHH
Confidence 4999999999999999954 467888999999999999999899999986 455555442 11111123467788
Q ss_pred HHHHHHh--hcC-CCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHH
Q 000194 325 MNHILTV--LRI-PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHV 401 (1880)
Q Consensus 325 ~~~Ll~~--L~~-~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l 401 (1880)
+|+|+.. +.+ +..|..++.++-.++...|+.+.||++.+++.+.++...-.+ ..+.-++ -.. ...-
T Consensus 1132 LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~----~vLnYls---~r~----~~~e 1200 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP----QVLNYLS---LRL----INIE 1200 (1702)
T ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch----HHHHHHH---Hhh----hhhH
Confidence 8888753 322 235889999999999999999999999999998887743221 1111111 111 1111
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc
Q 000194 402 RGLLDIMFSAG-LSTTLVDALEQITVSIP-SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479 (1880)
Q Consensus 402 ~~ll~~l~~~~-ls~~l~~~l~~i~~~~p-~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1880)
.+.++.+..++ -+.++.+.+..+...+- ..+..+.+++.+.+. |. . + .+. . ..-.
T Consensus 1201 ~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R----~s-V---g------l~T--------k-vg~A 1257 (1702)
T KOG0915|consen 1201 TEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVR----GS-V---G------LGT--------K-VGCA 1257 (1702)
T ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHh----cc-C---C------CCc--------c-hhHH
Confidence 23344443322 22223222222221111 011122233333322 11 0 0 000 0 0000
Q ss_pred h-hHHHHHHhhccc-ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH
Q 000194 480 A-PVQLALQTLARF-NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1880)
Q Consensus 480 ~-~~~~Al~~L~~~-~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1880)
. ...++.+...++ +|.|. +...+++.+.+-++.||++-+.+|+.++.-.-. .....+
T Consensus 1258 ~fI~~L~~r~~~emtP~sgK-----ll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~----------------dq~qKL 1316 (1702)
T KOG0915|consen 1258 SFISLLVQRLGSEMTPYSGK-----LLRALFPGAKDRNESVRKAFASAMGYLAKFSSP----------------DQMQKL 1316 (1702)
T ss_pred HHHHHHHHHhccccCcchhH-----HHHHHhhccccccHHHHHHHHHHHHHHHhcCCh----------------HHHHHH
Confidence 0 112333322222 23332 223445778888999999999999998853210 012344
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccccc
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL 635 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~ 635 (1880)
+..++..++. -.++...++.+.+..+.. .+.+..| ...++|.+|.+++++..+....=-++|..++...-..+.
T Consensus 1317 ie~~l~~~l~--k~es~~siscatis~Ian~s~e~Lkn~--asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvr 1392 (1702)
T KOG0915|consen 1317 IETLLADLLG--KDESLKSISCATISNIANYSQEMLKNY--ASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVR 1392 (1702)
T ss_pred HHHHHHHHhc--cCCCccchhHHHHHHHHHhhHHHHHhh--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhh
Confidence 4444444431 111212455444443421 0111111 245899999999988655555555667666655443332
Q ss_pred HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc-CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHH
Q 000194 636 PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR-PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD 714 (1880)
Q Consensus 636 p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~-py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~ 714 (1880)
=++..+++.......++ .....|.+++..+-.++......+. |++-.+...+...+..+. .+=.+..+.++..
T Consensus 1393 l~~~eiLn~iceni~nn-~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRi-----wdGKe~iLKAl~~ 1466 (1702)
T KOG0915|consen 1393 LYLLEILNLICENITNN-ESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRI-----WDGKEEILKALAS 1466 (1702)
T ss_pred hhHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccc-----cccHHHHHHHHHH
Confidence 25555555555555555 5678889999998888887666555 888888888888777642 2223455566665
Q ss_pred HHHhcCCchhhhHH
Q 000194 715 LARVGGFGMRQYIS 728 (1880)
Q Consensus 715 La~~~g~~~~~~~~ 728 (1880)
....++..+..-.+
T Consensus 1467 ~~~a~~~~v~~~~~ 1480 (1702)
T KOG0915|consen 1467 AFEAGLADVKRNMS 1480 (1702)
T ss_pred HHHHhHHHHHHhch
Confidence 55555555444444
No 23
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.64 E-value=1.4e-12 Score=151.67 Aligned_cols=697 Identities=16% Similarity=0.153 Sum_probs=394.2
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~ 190 (1880)
|...|..++.-.-|.+-+....++++++.-.-+...-.||...+-.+-.++- +.+-.+|-.+-.++..|+..|+--+
T Consensus 205 fnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~plli-ded~~~r~~g~eii~nL~~~~Gl~~-- 281 (975)
T COG5181 205 FNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLI-DEDLKRRCMGREIILNLVYRCGLGF-- 281 (975)
T ss_pred HHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEEEEeecccc-CccHHHhcccHHHHHHHHHHhccce--
Confidence 3334444443222344455666677777654344443343332222222221 2233455556566666766655321
Q ss_pred chHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000194 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1880)
Q Consensus 191 ~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1880)
++..+-.-+...++.||+-+..|.+.+.+.+. ..-+..+++.++. +..+|+.||.++.+...+...
T Consensus 282 ----~vs~mrpDi~~~deYVRnvt~ra~~vva~alg-------v~~llpfl~a~c~---SrkSw~aRhTgiri~qqI~~l 347 (975)
T COG5181 282 ----SVSSMRPDITSKDEYVRNVTGRAVGVVADALG-------VEELLPFLEALCG---SRKSWEARHTGIRIAQQICEL 347 (975)
T ss_pred ----eeeeccCCcccccHHHHHHHHHHHHHHHHhhC-------cHHHHHHHHHHhc---CccchhhhchhhHHHHHHHHH
Confidence 12222234446778999999999988766544 1223444444443 444699999999999998887
Q ss_pred chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchH----HHHHH
Q 000194 271 TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSG----FIALG 346 (1880)
Q Consensus 271 ~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a----~~alg 346 (1880)
.|.-..+|+..++..+-.++.+++..||-.+.+++..+|+....-=.+ .++.++-.|-.-.+. .|+.. +.|+|
T Consensus 348 lG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie-~fd~vl~pLw~g~~~--hrgk~l~sfLkA~g 424 (975)
T COG5181 348 LGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIE-QFDEVLCPLWEGASQ--HRGKELVSFLKAMG 424 (975)
T ss_pred hCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchH-HHHHHHHHHHHHHHh--cCCchHHHHHHHhc
Confidence 777778899999998888889999999999999999999765431111 224444333333221 23332 33333
Q ss_pred HHHhhchhh-hhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHH-HHHHHHHHhcCCCHHHHHHHHHH
Q 000194 347 EMAGALDGE-LFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTLVDALEQI 424 (1880)
Q Consensus 347 ~la~~v~~~-~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l-~~ll~~l~~~~ls~~l~~~l~~i 424 (1880)
.+.-....+ ...|-..+|+++...+...+.+. ...+..+-.+|.++|.+-..++ .++.|.+|++- +
T Consensus 425 ~iiplm~peYa~h~tre~m~iv~ref~spdeem-kk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~f--------w--- 492 (975)
T COG5181 425 FIIPLMSPEYACHDTREHMEIVFREFKSPDEEM-KKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF--------W--- 492 (975)
T ss_pred cccccCChHhhhhhHHHHHHHHHHHhCCchhhc-chhHHHHHHHHhccCCCCHHHHHHhhcHHhhchH--------H---
Confidence 332222211 11233567888888774443221 2455566677888877544444 46666666420 0
Q ss_pred HHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH
Q 000194 425 TVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR 504 (1880)
Q Consensus 425 ~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~ 504 (1880)
..+ ..|+. ++. ... ...+..+| +++|+ +++-
T Consensus 493 -----------~rr--------~A~dr------------~~~-------k~v-~~ttvilA-k~~g~---------~~v~ 523 (975)
T COG5181 493 -----------RRR--------SAGDR------------RSY-------KQV-VLTTVILA-KMGGD---------PRVS 523 (975)
T ss_pred -----------Hhh--------hcccc------------ccc-------cee-ehhHHHHH-HHcCC---------hHHH
Confidence 000 00100 000 000 00011111 22221 4566
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHH-----
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRH----- 579 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~----- 579 (1880)
+-++.++.|+.+-.|+.+|.+..+++..-.. ..+ -.++....+..++. ++.+.+..+..
T Consensus 524 ~kil~~~~De~ep~r~m~a~~vsri~~~lg~----~~~-----------dErleerl~d~il~-Afqeq~~t~~~il~~f 587 (975)
T COG5181 524 RKILEYYSDEPEPYRKMNAGLVSRIFSRLGR----LGF-----------DERLEERLYDSILN-AFQEQDTTVGLILPCF 587 (975)
T ss_pred HHHHhhccCCcchhhhhhhHHHHHHHHhccc----ccc-----------cHHHHHHHHHHHHH-HHHhccccccEEEecc
Confidence 6667778888888899888887777643321 011 11222333333333 33443332211
Q ss_pred -HHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc-cHHHHHHHHHHHHHHhcCCCChH
Q 000194 580 -SIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLIQLLTYLEQSSADNK 657 (1880)
Q Consensus 580 -~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~~~l~~l~~~~~~~~ 657 (1880)
+++.++. -+.-+|+ +.++..++..|+.+.+.||+.|.++.|.|+....+.= ...+++ +...|.+-... ..++
T Consensus 588 ~tv~vsl~--~r~kp~l--~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~iLyE~lge-~ypE 661 (975)
T COG5181 588 STVLVSLE--FRGKPHL--SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK-LGNILYENLGE-DYPE 661 (975)
T ss_pred cceeeehh--hccCcch--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH-HhHHHHHhcCc-ccHH
Confidence 1122221 1222444 3578888899999999999999999998876433211 122222 22222221122 2444
Q ss_pred hHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhh--hHHhHHHHH
Q 000194 658 CREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQ--YISELMPLI 734 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~--~~~~l~p~l 734 (1880)
.-...+.++..+..... ..++|=+..|++.+.|.+++. ...|..+.+.-+|.++..+++...+ ++. +-=.+
T Consensus 662 vLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnk-----h~Kv~~nti~lvg~I~~~~peyi~~rEWMR-IcfeL 735 (975)
T COG5181 662 VLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNK-----HQKVVANTIALVGTICMNSPEYIGVREWMR-ICFEL 735 (975)
T ss_pred HHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhh-----hHHHhhhHHHHHHHHHhcCcccCCHHHHHH-HHHHH
Confidence 43344444444444332 557788899999999999975 6777777788888888877664322 222 22234
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 735 ~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
++.|... +.+.|.+|..++|.+.+..|. .+++..|++-|+.. ....|.-+--+||++|-.
T Consensus 736 vd~Lks~-nKeiRR~A~~tfG~Is~aiGP--------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~---------- 795 (975)
T COG5181 736 VDSLKSW-NKEIRRNATETFGCISRAIGP--------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEY---------- 795 (975)
T ss_pred HHHHHHh-hHHHHHhhhhhhhhHHhhcCH--------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhh----------
Confidence 4555533 467899999999999988775 26899999988754 233333222233333210
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCC
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV 894 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~ 894 (1880)
.-+-.|+++||.--..|.. .++..+..|++.+|+..|....
T Consensus 796 --------------------------------------cgpfsVlP~lm~dY~TPe~-nVQnGvLkam~fmFeyig~~s~ 836 (975)
T COG5181 796 --------------------------------------CGPFSVLPTLMSDYETPEA-NVQNGVLKAMCFMFEYIGQASL 836 (975)
T ss_pred --------------------------------------cCchhhHHHHHhcccCchh-HHHHhHHHHHHHHHHHHHHHHH
Confidence 0012456666665555543 4567899999999999999888
Q ss_pred CCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHH
Q 000194 895 PYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLC 974 (1880)
Q Consensus 895 ~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~ 974 (1880)
.|+-.|.|.+-.++.+.++..|......+.-++-.. .-....+..+.++.-.|.+.-.+... ....+...++.++
T Consensus 837 dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc--~gtg~eda~IHLlNllwpNIle~sPh---vi~~~~Eg~e~~~ 911 (975)
T COG5181 837 DYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC--PGTGDEDAAIHLLNLLWPNILEPSPH---VIQSFDEGMESFA 911 (975)
T ss_pred HHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC--CCcccHHHHHHHHHHhhhhccCCCcH---HHHHHHHHHHHHH
Confidence 999999999999998888777776554333322210 00123455566666677764322211 1225678888899
Q ss_pred HHhhhh
Q 000194 975 LALNDE 980 (1880)
Q Consensus 975 ~~l~~~ 980 (1880)
.+++..
T Consensus 912 ~~lg~g 917 (975)
T COG5181 912 TVLGSG 917 (975)
T ss_pred HHhccH
Confidence 998865
No 24
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.64 E-value=4.3e-12 Score=147.67 Aligned_cols=561 Identities=15% Similarity=0.185 Sum_probs=339.8
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHH
Q 000194 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIW 200 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~ 200 (1880)
+.|+-|+..++.++|-.+.+-| ..+ +...++.+- +.++|..||.++.+..++++-.+....+|+..++..|-
T Consensus 292 ~~deYVRnvt~ra~~vva~alg--v~~-----llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~ 364 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALG--VEE-----LLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCIS 364 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhC--cHH-----HHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHH
Confidence 3577899999999998888743 111 112233332 56689999999999999999999888899999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc-chhhhHHHH
Q 000194 201 VALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN-TGEFMMSRY 279 (1880)
Q Consensus 201 ~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~-~~~~~~~~~ 279 (1880)
.++.|.+..||-.++.++..+++... .....-+..++.-+-.|.+++.. ..-.+-+.|.|.++-. .+++.--+-
T Consensus 365 ~~l~D~~~~vRi~tA~alS~lae~~~----Pygie~fd~vl~pLw~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~t 439 (975)
T COG5181 365 KLLKDRSRFVRIDTANALSYLAELVG----PYGIEQFDEVLCPLWEGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDT 439 (975)
T ss_pred HHhhccceeeeehhHhHHHHHHHhcC----CcchHHHHHHHHHHHHHHHhcCC-chHHHHHHHhccccccCChHhhhhhH
Confidence 99999999999999999998877543 34455566777667666655421 2234444466666553 334555556
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---CCCc-c--hHHHHHHHHHhhch
Q 000194 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---PAER-D--SGFIALGEMAGALD 353 (1880)
Q Consensus 280 ~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---~~~r-~--~a~~alg~la~~v~ 353 (1880)
.+.++.+++.+++++...++.+.......++..... -..|.+++.|.+++..-. ..+| . ....+-..+|.-+|
T Consensus 440 re~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~t-p~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g 518 (975)
T COG5181 440 REHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDT-PWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGG 518 (975)
T ss_pred HHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCC-HHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcC
Confidence 678889999999988887777665554444433321 223567888887776532 1222 1 11222223455555
Q ss_pred hhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCh
Q 000194 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLL 432 (1880)
Q Consensus 354 ~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~-~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~ 432 (1880)
. +.+...+.+.+.+....-+.-+....+.+...+|. .|..-+
T Consensus 519 ~------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErl------------------------------- 561 (975)
T COG5181 519 D------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERL------------------------------- 561 (975)
T ss_pred C------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHH-------------------------------
Confidence 4 44556666666543211111233344444444443 232211
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHH-hhcccccCCCcchhhHHHHHhhhc
Q 000194 433 PTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ-TLARFNFKGHDLLEFARDSVVLYL 511 (1880)
Q Consensus 433 ~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~-~L~~~~~~~~~l~~~v~~~~~~~l 511 (1880)
.+++++.+...+..+... + ..+--++. ++.+.+|.+..+.+.+-..++..+
T Consensus 562 ---eerl~d~il~Afqeq~~t------------------------~-~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L 613 (975)
T COG5181 562 ---EERLYDSILNAFQEQDTT------------------------V-GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLL 613 (975)
T ss_pred ---HHHHHHHHHHHHHhcccc------------------------c-cEEEecccceeeehhhccCcchHHHHHHHHHHh
Confidence 122222222111111000 0 00000000 011223444433344445567889
Q ss_pred cCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC---C
Q 000194 512 DDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG---N 588 (1880)
Q Consensus 512 ~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~ 588 (1880)
.++.++||..|+..|+.+.. ...+| . ....+..+= -++--.+.+..|+|--+++.++.. .
T Consensus 614 ~~k~p~vR~~aadl~~sl~~-vlk~c----------~-----e~~~l~klg-~iLyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 614 RSKPPDVRIRAADLMGSLAK-VLKAC----------G-----ETKELAKLG-NILYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred cCCCccHHHHHHHHHHHHHH-HHHhc----------c-----hHHHHHHHh-HHHHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 99999999999998887653 22222 0 011111111 112223567778888887777641 1
Q ss_pred CCcchhhc--cHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH-HHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 589 RGFDDFLA--QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL-RRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 589 ~~fd~~L~--~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l-~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
..|+. +. -..+++.|...|...+..|....++++|.++...|.++-+.- .++...++..|... ..+.|..|...
T Consensus 677 ~~~~~-mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~--nKeiRR~A~~t 753 (975)
T COG5181 677 HRFRS-MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW--NKEIRRNATET 753 (975)
T ss_pred hcccc-cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh--hHHHHHhhhhh
Confidence 23331 10 124678888888888999999999999999999999876532 33445566666544 56778899999
Q ss_pred HHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh
Q 000194 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
+|.+.+..++ ..++..|+..++-. +...+.....+|+..++++|.. .++|.++.--..+ +..
T Consensus 754 fG~Is~aiGP------qdvL~~LlnnLkvq-----eRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TP-e~n 815 (975)
T COG5181 754 FGCISRAIGP------QDVLDILLNNLKVQ-----ERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETP-EAN 815 (975)
T ss_pred hhhHHhhcCH------HHHHHHHHhcchHH-----HHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCc-hhH
Confidence 9999988662 56788888877643 3334444455777788877752 4667766544433 345
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
+..-.+++++-+.+++|..-.-|.. .+.+.|-..|.+ .++.-|..+..+|.-+
T Consensus 816 VQnGvLkam~fmFeyig~~s~dYvy--~itPlleDAltD-rD~vhRqta~nvI~Hl 868 (975)
T COG5181 816 VQNGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTD-RDPVHRQTAMNVIRHL 868 (975)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcc-cchHHHHHHHHHHHHH
Confidence 6777789999999999875444432 456666666653 4666677666665443
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=5.9e-10 Score=143.59 Aligned_cols=437 Identities=15% Similarity=0.201 Sum_probs=290.4
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc-ccc
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE-RLI 677 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~ 677 (1880)
.++|.|+..--|++..||.+...+|+.|.......+-.++..++-+++..+.+ ..+|+||.+|-+|.++++.-+ +.+
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~--kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS--KEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHcCCChHHH
Confidence 56888888889999999999999999999876666777888888888888765 589999999999999998754 344
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHH---HHHHHHHHHhc-----CCchhhhHHhHHHHHHH--HHhcCCchhhH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGV---LVTVGDLARVG-----GFGMRQYISELMPLIVE--ALLDGAAVTKR 747 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~---~~~l~~La~~~-----g~~~~~~~~~l~p~l~~--~l~d~~~~~~r 747 (1880)
...++.+-..+...+.|- ..+|+.++ +.+++.+.... |..-...++.++|.+++ .+. .-.++|
T Consensus 1076 ~e~lpelw~~~fRvmDDI-----KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims--~v~evr 1148 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDI-----KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMS--KVNEVR 1148 (1702)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCccc--chHHHH
Confidence 555666666666666553 44555443 45555544322 33456677777887776 232 235799
Q ss_pred HHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HcccCccchhhccccCCCcccccccC
Q 000194 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI-MGALDPHAHKRNQQLSGSHGEVTRAA 826 (1880)
Q Consensus 748 ~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~-lgaldp~~~~~~~~~~~~~~~~~~~~ 826 (1880)
..++.++..++.+.|..+.||. |.|++.|++....-++..+-.-++++.++ ..++|..+- .
T Consensus 1149 ~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~----------------s 1210 (1702)
T KOG0915|consen 1149 RFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRA----------------S 1210 (1702)
T ss_pred HHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHH----------------h
Confidence 9999999999999999999985 89999999998755566666666666443 123332210 0
Q ss_pred CCCCCC-CCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCC-ChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHH
Q 000194 827 SDSGQH-IQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP-SLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDL 904 (1880)
Q Consensus 827 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~-s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~l 904 (1880)
...+.| .+.++.. + +..+.-.....++.+.+.++-. -+. ....+...+..+...+|...-||.++++..+
T Consensus 1211 ~aksspmmeTi~~c----i---~~iD~~vLeelip~l~el~R~sVgl~-Tkvg~A~fI~~L~~r~~~emtP~sgKll~al 1282 (1702)
T KOG0915|consen 1211 AAKSSPMMETINKC----I---NYIDISVLEELIPRLTELVRGSVGLG-TKVGCASFISLLVQRLGSEMTPYSGKLLRAL 1282 (1702)
T ss_pred hhcCCcHHHHHHHH----H---HhhhHHHHHHHHHHHHHHHhccCCCC-cchhHHHHHHHHHHHhccccCcchhHHHHHH
Confidence 000000 0011100 0 0011111223445555555432 121 2335667777788889999999999999999
Q ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhc
Q 000194 905 FHTVRTCDDYLKDYITWKLGTLVSIVRQ-HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRT 983 (1880)
Q Consensus 905 l~~l~~~~~~~~~~~~~~l~~lv~~~~~-~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~ 983 (1880)
+..+++.+++.+..+..+.|-++....+ .+..++... +.+++.+.+.+ +. ....++..++.-..+.++.
T Consensus 1283 ~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~---l~~~l~k~es~------~s-iscatis~Ian~s~e~Lkn 1352 (1702)
T KOG0915|consen 1283 FPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETL---LADLLGKDESL------KS-ISCATISNIANYSQEMLKN 1352 (1702)
T ss_pred hhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HHHHhccCCCc------cc-hhHHHHHHHHHhhHHHHHh
Confidence 9999998888888888888888876654 555555554 44444443311 12 4455555588899999999
Q ss_pred cchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhh-hhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc-
Q 000194 984 HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE-HMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ- 1061 (1880)
Q Consensus 984 yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~-~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~- 1061 (1880)
|...++|++.=...+.++. ..+.-.++...++..|...-. |...++-.+|.-..++.+..+|..+...+..++.+..
T Consensus 1353 ~asaILPLiFLa~~ee~Ka-~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1353 YASAILPLIFLAMHEEEKA-NQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred hHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccc
Confidence 9999999987555432111 122234566655554443322 5556666666666666789999999999999988732
Q ss_pred --ccchhHhHHHHHHHhhCCCC
Q 000194 1062 --VTGHISSLVHHLKLVLDGKN 1081 (1880)
Q Consensus 1062 --~~~~~~~ii~~l~~~l~~~~ 1081 (1880)
..|++-.+...+...+.+.-
T Consensus 1432 s~~~p~ilkl~~~ll~~L~GRi 1453 (1702)
T KOG0915|consen 1432 SAPIPVILKLALSLLDTLNGRI 1453 (1702)
T ss_pred cCChHHHHHHHHHHHHHhhccc
Confidence 23677777777777776653
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.8e-12 Score=150.64 Aligned_cols=369 Identities=14% Similarity=0.111 Sum_probs=258.2
Q ss_pred HHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchh
Q 000194 28 RILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENAS 106 (1880)
Q Consensus 28 ~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~ 106 (1880)
.+.++|.++..++|+ ||.||++.|+....+-.-+...+++.++.+ +.+.+++.+.|+||+.|+.+..-..+.+...
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~---d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAG---DYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH---HhccCcccccccchHHHHHHHHHHhccccHH
Confidence 366788888888887 899999999988888887888888777765 7889999999999999999984333233444
Q ss_pred HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCC---------------------
Q 000194 107 KVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDR--------------------- 165 (1880)
Q Consensus 107 ~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~--------------------- 165 (1880)
++.+...-+..+|. +.|..|+..|++.+..+++...+...-|++..+.... -+..+.
T Consensus 81 Y~~~iv~Pv~~cf~-D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~-klsaDsd~~V~~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFS-DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLC-KLSADSDQNVRGGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHhhHHHHHhcc-CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHH-HHhcCCccccccHHHHHHHHHHHhccc
Confidence 66666667777774 7789999999999998888632221112221111111 111111
Q ss_pred ---------------------cchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 166 ---------------------VEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 166 ---------------------~~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
+...|..-+.-+ .+..+.|. -|..|++.+++.+++.|.|+++.||.-+..++++++.
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl-~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWL-YVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 222333322222 22334555 6889999999999999999999999999999999998
Q ss_pred HHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhH-HHHHHH
Q 000194 224 VIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRL-VRLSIT 302 (1880)
Q Consensus 224 ~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~-Vr~~~~ 302 (1880)
.|....... -+..+.+.+...++++. .+.+.-|+..+.+++...|..+.+++..++..++.++.+.++. ++..+.
T Consensus 238 eI~s~P~s~---d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 238 EIRSSPSSM---DYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHhcCcccc---CcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 776422111 24566777777888775 6778888999999999999999999999999999998877663 665544
Q ss_pred HHhHhHhhhChhhHHH--HHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC
Q 000194 303 SLLPRIAHFLRDRFVT--NYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP 378 (1880)
Q Consensus 303 ~~i~~la~~~~~~f~~--~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~ 378 (1880)
..-+.+-....+.+.. --+..++..+...+.++. .|..++..+..+-...|.++..+.++|...+...|.+.++.+
T Consensus 314 ~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~v 393 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEV 393 (675)
T ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHH
Confidence 3333322211111111 123688888888887654 488999999999999999999999999999999998766544
Q ss_pred CchHHHHHHHHHHHhCC-CchHHHHHHHH
Q 000194 379 SLEALACVGNIARAMGP-VMEPHVRGLLD 406 (1880)
Q Consensus 379 ~~~a~~~l~~la~~~g~-~~~~~l~~ll~ 406 (1880)
-..++..++.+|..-.. ...+++..+++
T Consensus 394 vl~~L~lla~i~~s~~~~~~~~fl~sLL~ 422 (675)
T KOG0212|consen 394 VLLALSLLASICSSSNSPNLRKFLLSLLE 422 (675)
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHHHH
Confidence 34455555555554332 34556666655
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.5e-12 Score=152.82 Aligned_cols=379 Identities=14% Similarity=0.096 Sum_probs=251.4
Q ss_pred ccccccCCCCC-CCCCCCHHHHHHHHHHHcCC-C-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-C
Q 000194 6 QSLRYIGPPAP-GAGGGSLDALNRILADLCTH-G-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-N 81 (1880)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~s~-~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~ 81 (1880)
+..--|+||.. -.++.+.+.+...+..+.+. . .++.+|+.++..+|....-+.-.+ .. +...+.+.+.. .
T Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--~~----~l~~l~~ai~dk~ 187 (569)
T KOG1242|consen 114 RAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE--FG----FLDNLSKAIIDKK 187 (569)
T ss_pred HHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--hh----HHHHHHHHhcccc
Confidence 34456999988 56777777777766666543 2 466679999999986554443322 12 23334444544 4
Q ss_pred ChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHhh
Q 000194 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDW 160 (1880)
Q Consensus 82 ~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~~~~~v~~~~~~~~~~ 160 (1880)
....|.++..|+..+....+....+.+..+.+.+...+ ++.+..|+..|..+...+... .......++++.+....
T Consensus 188 ~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~-- 264 (569)
T KOG1242|consen 188 SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLL-- 264 (569)
T ss_pred hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHH--
Confidence 55566689999999977653222344444444444444 255788999888888887765 22223344444444443
Q ss_pred hcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHH
Q 000194 161 LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240 (1880)
Q Consensus 161 l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~ 240 (1880)
+. .|+.+.+++.+++.+++++|.++.-++++++|.+...|.|.++.||+++.+++..+.+++.+.+ ...+
T Consensus 265 --~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-------I~~~ 334 (569)
T KOG1242|consen 265 --EA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-------IQKI 334 (569)
T ss_pred --HH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-------HHHH
Confidence 33 8899999999999999999999999999999999999999999999999999999988877543 2334
Q ss_pred HHHHHhhccCCC--------------------------------------ChhHHHHHHHHHHHHHHc--chhhhHHHHH
Q 000194 241 FEATQDGLGRNA--------------------------------------PVHSIHGSLLAVGELLRN--TGEFMMSRYR 280 (1880)
Q Consensus 241 l~~~~~~l~~~~--------------------------------------~~~~~~~al~~l~~ll~~--~~~~~~~~~~ 280 (1880)
+|.+.++++++. +...+..++.+++.+..- ....+.|+++
T Consensus 335 ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~ 414 (569)
T KOG1242|consen 335 IPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP 414 (569)
T ss_pred HHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH
Confidence 444444333332 123334444455555442 2346778888
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC---CCcchHHHHHHHHHhhchhhhh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP---AERDSGFIALGEMAGALDGELF 357 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~---~~r~~a~~alg~la~~v~~~~~ 357 (1880)
++++.+-..+.+..|.||..+..+++.+-+-.. +.+++...|++...++.. .+|..+.+.++.+....|.
T Consensus 415 ~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g----~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v--- 487 (569)
T KOG1242|consen 415 SLLPGLKENLDDAVPEVRAVAARALGALLERLG----EVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV--- 487 (569)
T ss_pred HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH----hhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc---
Confidence 888888887777899999999999987764333 335588899999888654 3677888888887766664
Q ss_pred hhhhHHHHHHHHhhcCCCCC--CCchHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000194 358 HYLPTITSHLREAIAPRRGK--PSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1880)
Q Consensus 358 p~l~~i~~~l~~~l~~~~~~--~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~ 410 (1880)
++...++..+.......... .+......+..+-...|..+.||+.++++.+.+
T Consensus 488 ~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k 542 (569)
T KOG1242|consen 488 EKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLK 542 (569)
T ss_pred hHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHH
Confidence 34444554444333222111 223344455555556677888999988887664
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=6.6e-11 Score=142.07 Aligned_cols=311 Identities=15% Similarity=0.130 Sum_probs=222.5
Q ss_pred hcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHHH
Q 000194 78 LESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKM 156 (1880)
Q Consensus 78 ~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~~ 156 (1880)
...+....+.+-..++..+.....+.. ...+..-+..++. ..+..-++.|+..+..++...| ...+.+. .+..
T Consensus 105 ~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~ 178 (569)
T KOG1242|consen 105 LDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLT-STKIAERAGAAYGLAGLVNGLG--IESLKEFGFLDN 178 (569)
T ss_pred cCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhc-cccHHHHhhhhHHHHHHHcCcH--HhhhhhhhHHHH
Confidence 334555566666666666644321221 2345555666665 5567777888888877776422 2222222 3444
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 000194 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1880)
Q Consensus 157 ~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1880)
....+++.+...+|.++..+......+.+..+.||+..++|.|+..+.|..+.||+||.+|.++++..+.. +-
T Consensus 179 l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~-------~a 251 (569)
T KOG1242|consen 179 LSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA-------YA 251 (569)
T ss_pred HHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc-------ch
Confidence 44445555555566688889888899999999999999999999999999999999999999998876541 23
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 237 ~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
++.+++.++.++... .|..+.+++..+|.+..+.+..+...+.++++.+...+.+..+.||++...++-.+......
T Consensus 252 VK~llpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-- 328 (569)
T KOG1242|consen 252 VKLLLPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-- 328 (569)
T ss_pred hhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc--
Confidence 556677777666655 59999999999999999999888889999999999999999999999999999888765432
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhC-
Q 000194 317 VTNYLKICMNHILTVLRIPAE-RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG- 394 (1880)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~~~-r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g- 394 (1880)
.-+...+|.|+.++..+.. -..+...||.- ..|..--.|-+.-+++.++.++.+........+...++.++.-+.
T Consensus 329 --~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t-tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 329 --PDIQKIIPTLLDALADPSCYTPECLDSLGAT-TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred --HHHHHHHHHHHHHhcCcccchHHHHHhhcce-eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC
Confidence 2356778888999988773 34666666652 112211126667788999999965544334567888888888773
Q ss_pred -CCchHHHHHHHHH
Q 000194 395 -PVMEPHVRGLLDI 407 (1880)
Q Consensus 395 -~~~~~~l~~ll~~ 407 (1880)
..+.||++.++|.
T Consensus 406 p~~lapfl~~Llp~ 419 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPG 419 (569)
T ss_pred HHHHhhhHHHHhhH
Confidence 2678888877765
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=4.5e-07 Score=106.64 Aligned_cols=418 Identities=15% Similarity=0.137 Sum_probs=256.7
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000194 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1880)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1880)
.|.++|.|.-.+-|.||+--+....+..-+ .....++.++++.+......+.....+.|++..+.+..-+-|..-.+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~---~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVN---NNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH
Confidence 467899999999999999887766553322 12346788888877665433222334669988888876655555556
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000194 278 RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1880)
Q Consensus 278 ~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~ 355 (1880)
|.+.++.-++.++.+.+..||.-+|..+-.+|..+..++.. |++.+...+.......+ .|+.|-.--+.+-..|-+.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~-~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV-YFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc-chHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999888777654 77888888777765432 3443322222221122111
Q ss_pred hhh-hhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHH
Q 000194 356 LFH-YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPT 434 (1880)
Q Consensus 356 ~~p-~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~ 434 (1880)
-.. .++.+++.+.+-+-..++.. ..|+-.=+ .+-...|.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~t-------------------R~flv~Wl-----------------~~Lds~P~---- 199 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMT-------------------RQFLVSWL-----------------YVLDSVPD---- 199 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchH-------------------HHHHHHHH-----------------HHHhcCCc----
Confidence 001 23445555554442211110 00110000 00000000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC
Q 000194 435 IQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE 514 (1880)
Q Consensus 435 i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~ 514 (1880)
+++++ ..|.+.+-+..++.|+
T Consensus 200 ---------------------------------------------------~~m~~--------yl~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 200 ---------------------------------------------------LEMIS--------YLPSLLDGLFNMLSDS 220 (675)
T ss_pred ---------------------------------------------------HHHHh--------cchHHHHHHHHHhcCC
Confidence 11111 1233444555677888
Q ss_pred ChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh
Q 000194 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF 594 (1880)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~ 594 (1880)
+++||..+-.++..++ ....++|+. ++.
T Consensus 221 s~eVr~~~~t~l~~fL------------------------------------~eI~s~P~s---------------~d~- 248 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFL------------------------------------AEIRSSPSS---------------MDY- 248 (675)
T ss_pred cHHHHHHHHHHHHHHH------------------------------------HHHhcCccc---------------cCc-
Confidence 8889864433222222 111223321 010
Q ss_pred hccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc
Q 000194 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
.+.++.+..-++.++++++..|+.-+..+++..|..++|++.+++...+..+.++ +....++.+...=+.+.+-++
T Consensus 249 ---~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 249 ---DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred ---ccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHh
Confidence 2345666666778889999999999999999999999999988877777666554 222344444433333332221
Q ss_pred c-ccc--CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHH
Q 000194 675 R-LIR--PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAV 751 (1880)
Q Consensus 675 ~-~~~--py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al 751 (1880)
. ..+ --+.+|++++.+.+.++ ....+.+++.=+..+-...+.++..|.+++.+.+++.|.|. ++++-..++
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~-----~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L 398 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDD-----REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR-SDEVVLLAL 398 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcc-----hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc-hhHHHHHHH
Confidence 1 111 12348999999999875 45566777777777888889999999999999999999997 466777788
Q ss_pred HHHHHHHhhcCcccccCCcchHHHHHHHHHhcCC
Q 000194 752 STLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE 785 (1880)
Q Consensus 752 ~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~ 785 (1880)
.-+..+|...... ++-..+..|+++.+.+
T Consensus 399 ~lla~i~~s~~~~-----~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 399 SLLASICSSSNSP-----NLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHhcCcccc-----cHHHHHHHHHHHHhhh
Confidence 8888887765432 3345666666666543
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=99.14 E-value=6.9e-07 Score=116.01 Aligned_cols=444 Identities=13% Similarity=0.085 Sum_probs=252.2
Q ss_pred HHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000194 25 ALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1880)
Q Consensus 25 ~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~ 103 (1880)
.+..|-+.|.+++..+++ | +++++..... ++....++.++. +++.+++...|+=+-+.+..+....
T Consensus 33 e~~ELr~~L~s~~~~~kk~a---lKkvIa~mt~---G~DvS~LF~dVv----k~~~S~d~elKKLvYLYL~~ya~~~--- 99 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAA---VKRIIANMTM---GRDVSYLFVDVV----KLAPSTDLELKKLVYLYVLSTARLQ--- 99 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHH---HHHHHHHHHC---CCCchHHHHHHH----HHhCCCCHHHHHHHHHHHHHHcccC---
Confidence 345566777777543332 4 5666643333 334444444444 5778889888877777776664432
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh
Q 000194 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~ 183 (1880)
+....-..|.+.+=+. +.++.++..|-++++.+-. +++++..+..+...+ .+++.-.|.+|++++..+-..
T Consensus 100 -pelalLaINtl~KDl~-d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 100 -PEKALLAVNTFLQDTT-NSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred -hHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 2223334566666664 5688999999999987643 445555444444444 356667777777888888888
Q ss_pred cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHH
Q 000194 184 ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLA 263 (1880)
Q Consensus 184 ~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~ 263 (1880)
.|+.+.. ..+++.+...|.|+++.|...|..+|..+... .+ ..-......+..++..+.+-++|-+. .+
T Consensus 171 ~pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~----~~-~~l~l~~~~~~~Ll~~L~e~~EW~Qi----~I 239 (746)
T PTZ00429 171 DMQLFYQ--QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY----GS-EKIESSNEWVNRLVYHLPECNEWGQL----YI 239 (746)
T ss_pred Ccccccc--cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh----Cc-hhhHHHHHHHHHHHHHhhcCChHHHH----HH
Confidence 8876431 13445555668999999988888877766431 11 11122344455556666554456533 45
Q ss_pred HHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC-CCcchHH
Q 000194 264 VGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP-AERDSGF 342 (1880)
Q Consensus 264 l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~-~~r~~a~ 342 (1880)
|..|....++ -......++..+...++|.|+.|--.++.++-.+..+......+..+..+-+-++..+.++ ..|-.++
T Consensus 240 L~lL~~y~P~-~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaL 318 (746)
T PTZ00429 240 LELLAAQRPS-DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVC 318 (746)
T ss_pred HHHHHhcCCC-CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHH
Confidence 5555542221 1223457888888889999999998888888777755433344444444444444444433 3466777
Q ss_pred HHHHHHHhhchhhhhhhhhH------------------------------HHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 343 IALGEMAGALDGELFHYLPT------------------------------ITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 343 ~alg~la~~v~~~~~p~l~~------------------------------i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
..|..++..-+.-+.+++.. |+..+.++..+.+......++.++|.+|..
T Consensus 319 r~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k 398 (746)
T PTZ00429 319 KNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIK 398 (746)
T ss_pred HHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence 77777766655544333321 222233333322222224688999999988
Q ss_pred hCCCchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCc
Q 000194 393 MGPVMEPHVRGLLDIMFSAG-LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQ 471 (1880)
Q Consensus 393 ~g~~~~~~l~~ll~~l~~~~-ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1880)
+.......++.+++.+-..+ ...+....++.+.+..|.. .+...+.+.+ .
T Consensus 399 ~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~--~il~~L~~~~----~----------------------- 449 (746)
T PTZ00429 399 VDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL--LMLDTLVTDY----G----------------------- 449 (746)
T ss_pred ChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH--HHHHHHHHhh----c-----------------------
Confidence 76555556666665542211 2223345566666666652 1222222110 0
Q ss_pred cccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccC
Q 000194 472 QVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF 534 (1880)
Q Consensus 472 ~~~~~~~~~~~~~Al~~L~~~~-~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~ 534 (1880)
.++..+.+.++..+.+||+|. +-+. ...+++..+..+.+ +++.||.+...++.+++...+
T Consensus 450 -~~~i~e~~AKaaiiWILGEy~~~I~~-a~~~L~~~i~~f~~-E~~~VqlqlLta~vKlfl~~p 510 (746)
T PTZ00429 450 -ADEVVEEEAKVSLLWMLGEYCDFIEN-GKDIIQRFIDTIME-HEQRVQLAILSAAVKMFLRDP 510 (746)
T ss_pred -ccccccHHHHHHHHHHHHhhHhhHhh-HHHHHHHHHhhhcc-CCHHHHHHHHHHHHHHHhcCc
Confidence 011224445566688999982 2111 11233343333333 567899888888888886543
No 31
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.14 E-value=1.2e-07 Score=124.63 Aligned_cols=418 Identities=16% Similarity=0.155 Sum_probs=244.9
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChH
Q 000194 47 LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDRE 126 (1880)
Q Consensus 47 l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~ 126 (1880)
+.+++--. +.+..+.. +...+.+++.+++...|.-|-+++..+..... ..+.-..|.+.+=+. ++++.
T Consensus 27 l~kli~~~---~~G~~~~~----~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~-~~n~~ 94 (526)
T PF01602_consen 27 LKKLIYLM---MLGYDISF----LFMEVIKLISSKDLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLN-SPNPY 94 (526)
T ss_dssp HHHHHHHH---HTT---GS----THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHC-SSSHH
T ss_pred HHHHHHHH---HcCCCCch----HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhc-CCCHH
Confidence 66666333 34444432 34455678889999999999999998876542 233345677777675 56889
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCC
Q 000194 127 ILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDP 206 (1880)
Q Consensus 127 v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~ 206 (1880)
++..|-++++.+. .++.++..++.+.+.+. ++++..|..|+.++..+....|+.+... +++.+...|.|+
T Consensus 95 ~~~lAL~~l~~i~------~~~~~~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~ 164 (526)
T PF01602_consen 95 IRGLALRTLSNIR------TPEMAEPLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDK 164 (526)
T ss_dssp HHHHHHHHHHHH-------SHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHS
T ss_pred HHHHHHhhhhhhc------ccchhhHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCC
Confidence 9999999999876 45666666666666665 4555788888999999999988876543 677888889999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChh-----------------HH--HHHHHHHHHH
Q 000194 207 TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVH-----------------SI--HGSLLAVGEL 267 (1880)
Q Consensus 207 ~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~-----------------~~--~~al~~l~~l 267 (1880)
++.|+.+|..++..+ + ..+ .........++..+.+.+..+++|. .. ...+..+..+
T Consensus 165 ~~~V~~~a~~~l~~i-~---~~~-~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 165 DPSVVSAALSLLSEI-K---CND-DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp SHHHHHHHHHHHHHH-H---CTH-HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH-c---cCc-chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 999999999988877 1 011 1100233333333333333333221 11 1112222222
Q ss_pred HHcchh--------h------hHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000194 268 LRNTGE--------F------MMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1880)
Q Consensus 268 l~~~~~--------~------~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1880)
+...+. . -.+....++..+..++.++++.+|..++..+..++...+..+ . +... ....+.
T Consensus 240 l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v-~-~~~~----~~~~l~ 313 (526)
T PF01602_consen 240 LQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV-F-NQSL----ILFFLL 313 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH-G-THHH----HHHHHH
T ss_pred hhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh-h-hhhh----hhheec
Confidence 221110 0 001233455555666666666677777777776665543221 1 1011 111222
Q ss_pred CCC---CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCC-CCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000194 334 IPA---ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-RGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1880)
Q Consensus 334 ~~~---~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~-~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~ 409 (1880)
... -|..++..+..++..- -...|++.+...+.+. ....+..++..++.++..+.+....+++.+++.+.
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~~------n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANES------NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHhhccccc------chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 222 2555666555554322 1233455555555211 22234578899999999998888889988888776
Q ss_pred hcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHH
Q 000194 410 SAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ 487 (1880)
Q Consensus 410 ~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 487 (1880)
..+ ........+..+....|.....+...+.+.+.. ..+++....++.
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~------------------------------~~~~~~~~~~~w 437 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLED------------------------------ISSPEALAAAIW 437 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS------------------------------SSSHHHHHHHHH
T ss_pred hccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH------------------------------hhHHHHHHHHHh
Confidence 432 556667778888888888777666666665531 113335678899
Q ss_pred hhcccccC-CC--cchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccC
Q 000194 488 TLARFNFK-GH--DLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSF 534 (1880)
Q Consensus 488 ~L~~~~~~-~~--~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~ 534 (1880)
++|+|... +. ....+++..+.. ....++.||.....++.+++...+
T Consensus 438 ilGEy~~~~~~~~~~~~~~~~l~~~-~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 438 ILGEYGELIENTESAPDILRSLIEN-FIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHHHHCHHHTTTTHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred hhcccCCcccccccHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHhhCC
Confidence 99998321 11 122333333333 333467888888778888776543
No 32
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=0.00042 Score=89.90 Aligned_cols=207 Identities=19% Similarity=0.261 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH
Q 000194 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR 935 (1880)
Q Consensus 856 ~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~ 935 (1880)
..+.+.|.+.+++-+. ......+.++-.|++.++.....++++.+|.++-..+..+...|...|..|-.+.. |.
T Consensus 696 ~~I~n~L~ds~qs~~~-~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~ 769 (1176)
T KOG1248|consen 696 DDIFNSLLDSFQSSSS-PAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA-----IQ 769 (1176)
T ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH-----HH
Confidence 4566666666655432 34557788999999988866667888888887766677776677777665433332 22
Q ss_pred HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhH---HHHH
Q 000194 936 KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYV---LDIL 1012 (1880)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~---~~il 1012 (1880)
.+++.. +. .. .+.+.+|++.|.+-+. ++ . .+.++ ..+-
T Consensus 770 ~~~d~g-----------~e----------~~-----------~~~lnefl~~Isagl~---gd--~--~~~~as~Ivai~ 810 (1176)
T KOG1248|consen 770 SSLDDG-----------NE----------PA-----------SAILNEFLSIISAGLV---GD--S--TRVVASDIVAIT 810 (1176)
T ss_pred hhhccc-----------cc----------ch-----------HHHHHHHHHHHHhhhc---cc--H--HHHHHHHHHHHH
Confidence 221111 00 00 0112223333333211 11 1 11122 2222
Q ss_pred HHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc---ccccchhHhHHHHHHHhhCCCCHHHHHHH
Q 000194 1013 HTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR---VQVTGHISSLVHHLKLVLDGKNDELRKDA 1088 (1880)
Q Consensus 1013 ~~l~~~g~~~-~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~---~~~~~~~~~ii~~l~~~l~~~~~~l~~~a 1088 (1880)
+.+..++..+ +++++.++..++-++..+ ..+++++|+..+..++.. ..+.+|.+.+++.+.+.+++....+|..+
T Consensus 811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 811 HILQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3334455555 467777888888777554 788999999999999877 34788999999999998887778899999
Q ss_pred HHHHHHHHHHhcccc-ccchh
Q 000194 1089 VDALCCLAHALGEDF-TIFIP 1108 (1880)
Q Consensus 1089 l~~L~~l~~~~g~~f-~~fip 1108 (1880)
-..|-.|+...|.+. ..|.|
T Consensus 890 r~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 890 RLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHhCHHHHHhhCH
Confidence 999999999988553 35665
No 33
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=0.00047 Score=89.52 Aligned_cols=773 Identities=14% Similarity=0.125 Sum_probs=372.6
Q ss_pred HHHHHHHHHhhhc--CCChhhhhhHHHHHhHhhccccCcchhH---HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000194 67 MDQLYDRISGLLE--SNDAAENLGALRAIDELIDVALGENASK---VSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1880)
Q Consensus 67 ~~~l~~~i~~l~~--s~~~~~r~~~i~ai~~Li~~~~~~~~~~---~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~ 141 (1880)
+.++.+.+..+++ +.+......++-+++.|+-.+.....+. .+-+...|.-.+ .+-+.+++.|..++..+...
T Consensus 91 Fs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~--h~~pkvRk~a~~~i~~VL~~ 168 (1176)
T KOG1248|consen 91 FSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA--HKKPKVRKAAQRGIAAVLKG 168 (1176)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHcC
Confidence 3444455555554 6666677778888888876542222221 111222222222 34578888888888877664
Q ss_pred CCCCc-hhH--HHHHHHHHHhhhcCCCcchhHHH---HHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHH
Q 000194 142 GGAMT-ADE--VEFQVKMALDWLRGDRVEYRRFA---AVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAV 215 (1880)
Q Consensus 142 ~g~~~-~~~--v~~~~~~~~~~l~~~~~~~~R~a---A~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~ 215 (1880)
+...+ +++ .-...+.++..+...-.+..-.. .+.+|+.+....|. +.+..+-+.++..+...+..|+-.+.
T Consensus 169 p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~---~li~sl~e~lL~i~~~s~v~v~~~~~ 245 (1176)
T KOG1248|consen 169 PPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPR---PLIKSLCEVLLNITTESPVLVLLEVL 245 (1176)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHhhcccchHHHHHHHH
Confidence 32211 111 11122333333321111111222 33444444444443 56677788888999999999988888
Q ss_pred HHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH----cchhhhHHHHHHHHHHHHHHhh
Q 000194 216 EALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR----NTGEFMMSRYREVAEIVLRYLE 291 (1880)
Q Consensus 216 ~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~----~~~~~~~~~~~~i~~~ll~~~~ 291 (1880)
.++..++. .+.+..-......++..+...--+.+|.....+=+.++++.-. ...+......+.+....+.+..
T Consensus 246 q~l~~lf~---~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~~ 322 (1176)
T KOG1248|consen 246 QCLHSLFK---KHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTILE 322 (1176)
T ss_pred HHHHHHHh---cCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHHh
Confidence 88776653 2333344455666776666533333222222222223332221 2234444455555555566666
Q ss_pred cchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHhhchhhhhhhhhHHHHHHH
Q 000194 292 HRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE---RDSGFIALGEMAGALDGELFHYLPTITSHLR 368 (1880)
Q Consensus 292 ~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~---r~~a~~alg~la~~v~~~~~p~l~~i~~~l~ 368 (1880)
+..+.+-+++.+.+..+-..+.. +.+.+-...+..+.+.+- -..+++.+..+.+.+|+...||+-..++.|.
T Consensus 323 s~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~ 397 (1176)
T KOG1248|consen 323 SLIEELVQAASQSLKEILKESVT-----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLC 397 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Confidence 77777767776666666544433 111111111111112221 2367888888888899876788877776665
Q ss_pred HhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHH--------------HHHHHHhCCCChHH
Q 000194 369 EAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDA--------------LEQITVSIPSLLPT 434 (1880)
Q Consensus 369 ~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~--------------l~~i~~~~p~l~~~ 434 (1880)
.-=.........+.=+|+|.-..+.||.. +-.++|.=+.. .+.....+ |.-+.++|-++..+
T Consensus 398 ~lr~~~d~~~~~~ld~~IGSAV~AmGPe~---vL~~lpLnl~~-~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~s 473 (1176)
T KOG1248|consen 398 DLRASPDFFHKLQLDQCIGSAVRAMGPER---VLTILPLNLHA-ESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMS 473 (1176)
T ss_pred HhhcCCCCccHHHHHHHHHHHHHhhCHHH---HHHHcchhccc-cccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 42111111112356689999999999741 22222221111 11111111 11111111111111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC
Q 000194 435 IQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE 514 (1880)
Q Consensus 435 i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~ 514 (1880)
++.+..+. . +. +. ... -+++|+.
T Consensus 474 l~~K~~~l----------~---------------------~~-~~-~~~-~~~tl~~----------------------- 496 (1176)
T KOG1248|consen 474 LQLKAKKL----------K---------------------EA-GS-QVS-LYDTLVD----------------------- 496 (1176)
T ss_pred HHHHHHhh----------h---------------------hc-cC-cHH-HHHHHHH-----------------------
Confidence 11111000 0 00 00 000 1111110
Q ss_pred ChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC----CCC
Q 000194 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG----NRG 590 (1880)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~----~~~ 590 (1880)
.++.|+.... .++. .....+..+.+.|+.. +.. .++.|..++.+|.. +..
T Consensus 497 ----------QLW~LLP~FC------~~P~--------Dl~~sF~~la~~l~~a-l~~-~~elr~~Ic~sL~~Lv~~n~~ 550 (1176)
T KOG1248|consen 497 ----------QLWSLLPGFC------NYPV--------DLAESFTDLAPILGAA-LLK-RPELRETICNSLRMLVEQNKP 550 (1176)
T ss_pred ----------HHHHhChhhh------CCCc--------cHHHHHHHHHHHHHHH-Hhc-chHhHHHHHHHHHHHHHcCCC
Confidence 0111110000 0000 0000011111111111 111 11333333333210 000
Q ss_pred -cc-----hhhc--cHhhHHHHHHHhCC------CCHhHHHHHHHHHH-hhhcCCcccccHHHHHHHHHHHHHHhcCCCC
Q 000194 591 -FD-----DFLA--QADCLSAIFAALND------EDFDVREYAISVAG-RLSEKNPAYVLPALRRHLIQLLTYLEQSSAD 655 (1880)
Q Consensus 591 -fd-----~~L~--~~~~l~~L~~~l~D------~~~~VR~~a~~~l~-~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~ 655 (1880)
-+ .++. ....++.+|..-.- .....|...+.++. ......|..+.-.+..-+........ +
T Consensus 551 ~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~----~ 626 (1176)
T KOG1248|consen 551 SSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD----E 626 (1176)
T ss_pred cchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch----h
Confidence 00 0000 01245555543221 23455666666555 55555665544444333322222111 1
Q ss_pred hHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHh--cCCchhhhHHhHHHH
Q 000194 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV--GGFGMRQYISELMPL 733 (1880)
Q Consensus 656 ~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~--~g~~~~~~~~~l~p~ 733 (1880)
....-..+.+|..++...+-.-..++..+. .+.+..... .++.+..-+..-|+++... +......+++.+...
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~----~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~ 701 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENS----SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNS 701 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhcc----ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 111122333444443322222222233333 333433332 3667777777888888776 233567788888888
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhcc
Q 000194 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ 813 (1880)
Q Consensus 734 l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~ 813 (1880)
+.+.+++. +...+..++.+|..+.+..+.... .-.|.+++-++=.+ ++.+...|+.++.||-.+|++..+..
T Consensus 702 L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~--~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d---- 773 (1176)
T KOG1248|consen 702 LLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHC--DLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLD---- 773 (1176)
T ss_pred HHHHHhcc-chHHHHHHHHHHHHHHHhccHHHH--HHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhc----
Confidence 88888865 345777889999999888762211 11234444333333 46678889999999988886322110
Q ss_pred ccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHH-HHHHHHHHHHhCCC
Q 000194 814 QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKV-VGSLMFIFKSMGLG 892 (1880)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~-~~al~~i~~~~~~~ 892 (1880)
+.+.+ . ....++|. ..+... |-.++ .++.+. +-|+..|+...+..
T Consensus 774 --------------~g~e~--~-----------~~~lnefl-~~Isag----l~gd~--~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 774 --------------DGNEP--A-----------SAILNEFL-SIISAG----LVGDS--TRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred --------------ccccc--h-----------HHHHHHHH-HHHHhh----hcccH--HHHHHHHHHHHHHHHHHHhcc
Confidence 00000 0 00011121 222222 21222 233333 66777777765544
Q ss_pred C-CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHH
Q 000194 893 C-VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLV 970 (1880)
Q Consensus 893 ~-~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i 970 (1880)
. .+++++++..+-..|....+.++..+...+..++..+ ..++.+|+|++++.+......... .....+..++
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~------~~r~Kvr~Ll 893 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKI------KVRKKVRLLL 893 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhH------HHHHHHHHHH
Confidence 3 5788899998888888888888888888888888776 467889999999999874333220 1123567788
Q ss_pred HHHHHHhhh-hhhccchhhHHHHHHhc
Q 000194 971 QQLCLALND-EFRTHLPVILPCCIQVL 996 (1880)
Q Consensus 971 ~~l~~~l~~-~f~~yl~~l~p~ll~~l 996 (1880)
+.++..+|- ++++|+|...-.+|.-+
T Consensus 894 ekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred HHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 888877764 57777775555555444
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.02 E-value=5.9e-08 Score=127.41 Aligned_cols=438 Identities=17% Similarity=0.156 Sum_probs=256.0
Q ss_pred HHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 000194 503 ARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIF 582 (1880)
Q Consensus 503 v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l 582 (1880)
+-..+.+-+.++++.+|..|..+++.+..+ .++..+++.+ ...+.|+++.||..++
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-----------------------~~~~~l~~~v-~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP-----------------------EMAEPLIPDV-IKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-----------------------HHHHHHHHHH-HHHHHSSSHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc-----------------------chhhHHHHHH-HHHhcCCchHHHHHHH
Confidence 334455667889999999888888876522 2233333333 3346899999999988
Q ss_pred HhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHH
Q 000194 583 SSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREES 662 (1880)
Q Consensus 583 ~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a 662 (1880)
.++......++.+....+++.+..++.|+++.|+.+|+.++..+ +.+|....+.+.+... .+..+-.. .++-.+...
T Consensus 136 ~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~-~L~~~l~~-~~~~~q~~i 212 (526)
T PF01602_consen 136 LALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIR-ILCQLLSD-PDPWLQIKI 212 (526)
T ss_dssp HHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHH-HHHHHHTC-CSHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHH-Hhhhcccc-cchHHHHHH
Confidence 87741111122222122688888999999999999999999998 5555432222333222 22222133 455555555
Q ss_pred HHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCC
Q 000194 663 AKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA 742 (1880)
Q Consensus 663 ~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~ 742 (1880)
+++|..++...+..... ..+++.+.+.+.+. ++.|.-.++.++..+ .+. .+.+..+++.+.+.+.+.
T Consensus 213 l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~-----~~~V~~e~~~~i~~l---~~~--~~~~~~~~~~L~~lL~s~- 279 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS-----SPSVVYEAIRLIIKL---SPS--PELLQKAINPLIKLLSSS- 279 (526)
T ss_dssp HHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---SSS--HHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHhcccCChhhhhH--HHHHHHHHHHhhcc-----ccHHHHHHHHHHHHh---hcc--hHHHHhhHHHHHHHhhcc-
Confidence 55555444322211100 45777777777753 566665555444433 222 226778899999999854
Q ss_pred chhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccc
Q 000194 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEV 822 (1880)
Q Consensus 743 ~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~ 822 (1880)
+...|-.|+.+|..++......+. .+. ..+..+..+.+..+|..++.++..++. +.
T Consensus 280 ~~nvr~~~L~~L~~l~~~~~~~v~----~~~---~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~--------------- 335 (526)
T PF01602_consen 280 DPNVRYIALDSLSQLAQSNPPAVF----NQS---LILFFLLYDDDPSIRKKALDLLYKLAN--ES--------------- 335 (526)
T ss_dssp SHHHHHHHHHHHHHHCCHCHHHHG----THH---HHHHHHHCSSSHHHHHHHHHHHHHH----HH---------------
T ss_pred cchhehhHHHHHHHhhcccchhhh----hhh---hhhheecCCCChhHHHHHHHHHhhccc--cc---------------
Confidence 677999999999999877522221 111 223344555678999999998877641 00
Q ss_pred cccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhH
Q 000194 823 TRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLP 902 (1880)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip 902 (1880)
-...+++.|++-+++.+..+....++.++..+.... .+..+.++.
T Consensus 336 -------------------------------n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~----~~~~~~~v~ 380 (526)
T PF01602_consen 336 -------------------------------NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF----PPDAEWYVD 380 (526)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH----GSSHHHHHH
T ss_pred -------------------------------chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc----CchHHHHHH
Confidence 013466777777754433346677888888887766 345677788
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh
Q 000194 903 DLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982 (1880)
Q Consensus 903 ~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~ 982 (1880)
.+++.+....+.....+...+..++....+.-...++.++..+ ..... ..++..+.++....++.+.
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l----~~~~~---------~~~~~~~~wilGEy~~~~~ 447 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELL----EDISS---------PEALAAAIWILGEYGELIE 447 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHH----TSSSS---------HHHHHHHHHHHHHHCHHHT
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHH----HHhhH---------HHHHHHHHhhhcccCCccc
Confidence 8888888766655655555555555432222222334443333 32221 1345555555554544444
Q ss_pred c--cchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhhhhhHHHHHHhhc-CCCcHHHHHHHHHHHHhh
Q 000194 983 T--HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHMHLLLPALIRLFK-VDAPVDIRRAAIETLTRL 1056 (1880)
Q Consensus 983 ~--yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~~~ilp~l~~~l~-~~~~~~vr~~ai~~l~~l 1056 (1880)
. ..+.++..+.+.+.+ ....+...++.++..+....+ +....+++.+.+... ++.+.+||..|...+.-+
T Consensus 448 ~~~~~~~~~~~l~~~~~~----~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 448 NTESAPDILRSLIENFIE----ESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp TTTHHHHHHHHHHHHHTT----SHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 4 566666666666643 134466778888877654433 222355555555554 245788888887766544
No 35
>PTZ00429 beta-adaptin; Provisional
Probab=99.00 E-value=8.8e-06 Score=105.90 Aligned_cols=472 Identities=12% Similarity=0.040 Sum_probs=257.2
Q ss_pred HHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHH
Q 000194 155 KMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRV 234 (1880)
Q Consensus 155 ~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~ 234 (1880)
..+-+-|.+.....+|.+--.++..+..| . -+..+++.+++.+..++..+|+-..-.+..+.+ ..+
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G--~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~--------~~p 100 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMG--R----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR--------LQP 100 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCC--C----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------cCh
Confidence 33334444444445556655677766665 2 445677777788888899999988876655422 223
Q ss_pred HHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh
Q 000194 235 QWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 235 ~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~ 314 (1880)
+..-.....+..-+.+++ ..+|--|+..++.+ ... ...+.+...+...+.++++.||++|+-++..+-..+++
T Consensus 101 elalLaINtl~KDl~d~N-p~IRaLALRtLs~I---r~~---~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 101 EKALLAVNTFLQDTTNSS-PVVRALAVRTMMCI---RVS---SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHcC---CcH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 334455666677777765 34455544444332 111 22334555666777899999999999999998877775
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 315 RFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.+.+ ....+.|...|.+.+ ....|+.++-.+...-++.+. .....+..+...+.
T Consensus 174 lv~~---~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~-------------------- 229 (746)
T PTZ00429 174 LFYQ---QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLP-------------------- 229 (746)
T ss_pred cccc---cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhh--------------------
Confidence 4322 123334444454322 345566666665443332110 01111111111110
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000194 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1880)
Q Consensus 393 ~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1880)
++.+.. +-.+++.+.. +. |
T Consensus 230 ---e~~EW~----------------------------------Qi~IL~lL~~------y~---P--------------- 248 (746)
T PTZ00429 230 ---ECNEWG----------------------------------QLYILELLAA------QR---P--------------- 248 (746)
T ss_pred ---cCChHH----------------------------------HHHHHHHHHh------cC---C---------------
Confidence 011111 1112222210 00 0
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCcccccccc
Q 000194 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1880)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1880)
. +++. +. .+.+.+.+.+.+.++.|.-+|++++..+...... .
T Consensus 249 -~---~~~e---~~---------------~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~----------------~ 290 (746)
T PTZ00429 249 -S---DKES---AE---------------TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ----------------E 290 (746)
T ss_pred -C---CcHH---HH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH----------------H
Confidence 0 0000 11 1223345667777888887777766655321000 0
Q ss_pred chhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcc
Q 000194 553 KRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA 632 (1880)
Q Consensus 553 ~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1880)
...+.+..+...|+. +...++++|..++..+..-..-.+.+-++ .++..|...+|+.+ ||...+++|-.++...
T Consensus 291 ~~~~~~~rl~~pLv~--L~ss~~eiqyvaLr~I~~i~~~~P~lf~~-~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~-- 364 (746)
T PTZ00429 291 LIERCTVRVNTALLT--LSRRDAETQYIVCKNIHALLVIFPNLLRT-NLDSFYVRYSDPPF-VKLEKLRLLLKLVTPS-- 364 (746)
T ss_pred HHHHHHHHHHHHHHH--hhCCCccHHHHHHHHHHHHHHHCHHHHHH-HHHhhhcccCCcHH-HHHHHHHHHHHHcCcc--
Confidence 011222222233333 24567889988888763100001222222 35666677788776 8999999999988644
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Q 000194 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1880)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1880)
.+ ..++.++...... .+...+..+.+.+|.++...+. ....++..|+..+.+. ..+...++..+
T Consensus 365 Nv----~~IL~EL~eYa~d--~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~------~~~v~e~i~vi 428 (746)
T PTZ00429 365 VA----PEILKELAEYASG--VDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRR------PELLPQVVTAA 428 (746)
T ss_pred cH----HHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCC------chhHHHHHHHH
Confidence 22 2233333333322 4667888999999999987654 3566777777777653 22344556677
Q ss_pred HHHHHhcCCchhhhHHhHHHHHHHHH--hcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHH
Q 000194 713 GDLARVGGFGMRQYISELMPLIVEAL--LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWST 790 (1880)
Q Consensus 713 ~~La~~~g~~~~~~~~~l~p~l~~~l--~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~v 790 (1880)
..+.+..+.. .+++.++..+ .+-.+.+.|.+.+|.||..+..... .|.++..+++-+.. ++..|
T Consensus 429 k~IlrkyP~~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-------a~~~L~~~i~~f~~-E~~~V 494 (746)
T PTZ00429 429 KDIVRKYPEL------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-------GKDIIQRFIDTIME-HEQRV 494 (746)
T ss_pred HHHHHHCccH------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-------HHHHHHHHHhhhcc-CCHHH
Confidence 7776654442 1445555443 2334567888889999998765432 35677666655543 36789
Q ss_pred HHHHHHHHHHHcccCc
Q 000194 791 RREVLKVLGIMGALDP 806 (1880)
Q Consensus 791 r~~~l~~lg~lgaldp 806 (1880)
|.+.+.+...+-...|
T Consensus 495 qlqlLta~vKlfl~~p 510 (746)
T PTZ00429 495 QLAILSAAVKMFLRDP 510 (746)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9888887776654333
No 36
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=0.00059 Score=86.87 Aligned_cols=297 Identities=15% Similarity=0.123 Sum_probs=166.7
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc---cc
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE---RL 676 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~---~~ 676 (1880)
++.-++-.++++.--.|..|++.++.++...-. -...+++.+--..+.+.++ .+--+|.+|+-+|..++++.. ..
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-d~~~l~~ale~t~~~l~~d-~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-DPNNLSEALELTHNCLLND-NELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhccC-CcCchhhHHHHHHHHHHhcchhhhhh
Confidence 345566677888888999999999999853311 1233555555555666656 677789999999999999876 44
Q ss_pred ccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHH----Hhc-----CCchhhH
Q 000194 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEA----LLD-----GAAVTKR 747 (1880)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~----l~d-----~~~~~~r 747 (1880)
+.|+++++|+-++...++- +.+.. -.++..+....++++.||..++...+... +++ ..+.++-
T Consensus 541 ~~~hvp~~mq~lL~L~ne~-----End~L---t~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~ 612 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEV-----ENDDL---TNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKA 612 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhc-----chhHH---HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHH
Confidence 9999999999999998864 23333 33556677778889999988776666554 442 1122233
Q ss_pred HHHHHHHH---HHHhhcCcccccC-CcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccccc
Q 000194 748 EVAVSTLG---QVVQSTGYVITPY-NEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVT 823 (1880)
Q Consensus 748 ~~Al~~Lg---~l~~~~~~~i~p~-~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~ 823 (1880)
.+|.+.|. .+..+....-..+ ...|.+++.+..+|+++- .++-++++..+.-+....|
T Consensus 613 iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i-~dfyeE~~ei~~~~t~~~~----------------- 674 (1010)
T KOG1991|consen 613 IAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI-TDFYEELLEIVSSLTFLSK----------------- 674 (1010)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhhhhhc-----------------
Confidence 34433333 3333322210000 112445555555555442 2344444333222111000
Q ss_pred ccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCC--CCCcchhh
Q 000194 824 RAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC--VPYLPKVL 901 (1880)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~--~~~l~~ii 901 (1880)
.+.. . ...++..++..++|+- ..+.+.+.-++-+++..-++.+ .|...+++
T Consensus 675 -----------~Isp---~------------mW~ll~li~e~~~~~~-~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il 727 (1010)
T KOG1991|consen 675 -----------EISP---I------------MWGLLELILEVFQDDG-IDYFTDMMPALHNYVTYGTPSLLSNPDYLQIL 727 (1010)
T ss_pred -----------ccCH---H------------HHHHHHHHHHHHhhhh-HHHHHHHHHHHhhheeeCchhhhccchHHHHH
Confidence 0100 0 1244555666666654 2344444444444432222221 24334444
Q ss_pred HHHHHHHhcC---CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcC
Q 000194 902 PDLFHTVRTC---DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSS 951 (1880)
Q Consensus 902 p~ll~~l~~~---~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~ 951 (1880)
-.+...+-++ .++=.+.++..+..++-.++..+..|+|..+.+.......
T Consensus 728 ~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 728 LEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 4444433222 2223455677777888777777778888888888777665
No 37
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=0.00031 Score=87.13 Aligned_cols=683 Identities=16% Similarity=0.209 Sum_probs=358.6
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC-CCcchhHHHHHHHHHHHHh-h---
Q 000194 109 SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG-DRVEYRRFAAVLILKEMAE-N--- 183 (1880)
Q Consensus 109 ~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~-~~~~~~R~aA~~~l~~la~-~--- 183 (1880)
....+||.+.+. .|+.+++.|-++|..+....| ..- .++..+.+ .-+...|+||...++--.. +
T Consensus 5 e~l~~~l~qTl~--pdps~rk~aEr~L~~~e~q~~-y~l--------~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~ 73 (960)
T KOG1992|consen 5 ETLANYLLQTLS--PDPSVRKPAERALRSLEGQQN-YPL--------LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIP 73 (960)
T ss_pred HHHHHHHHhcCC--CCCccCchHHHHHHHhccCCC-chH--------HHHHHHhccCcChhHHHHHHHHHHHHHHhccCc
Confidence 346778888774 589999999999876654322 111 12223333 3367889999999988765 2
Q ss_pred ---cCcc-chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHH
Q 000194 184 ---ASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHG 259 (1880)
Q Consensus 184 ---~p~~-l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 259 (1880)
.|.- ...--..|...|+..|-.....|+..=.+|+. .+.+++ .++--+.+++.++..+++.+ -.+..|
T Consensus 74 ~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~----~Ig~~D---FP~kWptLl~dL~~~ls~~D-~~~~~g 145 (960)
T KOG1992|consen 74 AEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALS----LIGKRD---FPDKWPTLLPDLVARLSSGD-FNVING 145 (960)
T ss_pred CCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH----HHhccc---cchhhHHHHHHHHhhccccc-hHHHHH
Confidence 2222 23455667777888887777777766555554 455443 22334678888999888763 455556
Q ss_pred HHHHHHHHHHc------ch------hhhHHHHHHHHHHHHH----Hhh-c-chhH-------HHHHHHHHhHhHhhhChh
Q 000194 260 SLLAVGELLRN------TG------EFMMSRYREVAEIVLR----YLE-H-RDRL-------VRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 260 al~~l~~ll~~------~~------~~~~~~~~~i~~~ll~----~~~-~-~~~~-------Vr~~~~~~i~~la~~~~~ 314 (1880)
.+..-..+... +. .+...++.+-+..+++ ..+ + .+.. |....+.+.-++..-+-.
T Consensus 146 VL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiP 225 (960)
T KOG1992|consen 146 VLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIP 225 (960)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccch
Confidence 55444444331 01 1112222222222222 111 1 1111 111122233333333445
Q ss_pred hHHHHHHHHHHHHHHHhhcC--C-----C--------CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q 000194 315 RFVTNYLKICMNHILTVLRI--P-----A--------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379 (1880)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~--~-----~--------~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~ 379 (1880)
+|.|..++.-|+...+.|+. + + .|...++.+..-+...++++.||+++++...+.-|..-...++
T Consensus 226 EFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~k 305 (960)
T KOG1992|consen 226 EFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTK 305 (960)
T ss_pred HHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCcc
Confidence 67777889999988888762 1 1 1456777777778888888999999999999998865444443
Q ss_pred -----chHHHHHHHHHHHhCC--Cch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000194 380 -----LEALACVGNIARAMGP--VME--PHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1880)
Q Consensus 380 -----~~a~~~l~~la~~~g~--~~~--~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1880)
..|++++..+++.-.- -|. ..+..+.+.+.-..+ .+++...++.+. .-++.+..-+.|
T Consensus 306 yD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~--~lR~eDeElFED----------~pleYiRRDlEG- 372 (960)
T KOG1992|consen 306 YDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNL--ILREEDEELFED----------NPLEYIRRDLEG- 372 (960)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhccccc--ccchhhHHHhcc----------CHHHHHHHhccc-
Confidence 2467777777764211 010 111111111110000 001111111110 011122111111
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCCCc---chhhHHHHHhhhccCCChHH--HHHHH
Q 000194 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKGHD---LLEFARDSVVLYLDDEDKAT--RKDAA 523 (1880)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~~~~~~---l~~~v~~~~~~~l~~~~~~V--R~aAa 523 (1880)
+|.+ .....|++.++.+ .|.+.. +..++...+..|..+|+.+- ...|.
T Consensus 373 -----------------------sDvd--TRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~ai 427 (960)
T KOG1992|consen 373 -----------------------SDVD--TRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAI 427 (960)
T ss_pred -----------------------CCcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhh
Confidence 1111 1346688888876 454422 22344444555666554322 22233
Q ss_pred HHHHHhhhccCCCccccccCCccccccccchhHH----HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccH-
Q 000194 524 LCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL----IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQA- 598 (1880)
Q Consensus 524 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~- 598 (1880)
.-|..+..+.-. .++....+.. ..++ ...+++.|....+ .+-|-++..+++-.- .|-..+..+
T Consensus 428 yL~talaik~~t-------~~~Gvtstn~-lvdv~~Ff~~~ilp~L~s~~v-n~~pilka~aIKy~~---~FR~ql~~~~ 495 (960)
T KOG1992|consen 428 YLVTALAIKGQT-------AKHGVTSTNE-LVDVVDFFANQILPDLLSPNV-NEFPILKADAIKYIY---TFRNQLGKEH 495 (960)
T ss_pred hhhHHHHhhcch-------hhcceeeccc-cccHHHHHHHHhhHHhccCcc-ccccchhhcccceee---eecccCChHH
Confidence 222222222100 0000001111 1222 2233333332111 233555555555432 333334322
Q ss_pred --hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcC---------CcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 000194 599 --DCLSAIFAALNDEDFDVREYAISVAGRLSEK---------NPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667 (1880)
Q Consensus 599 --~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~---------~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1880)
..++.+...+.-+++.|-.-|...+.++-.. .|..+.|+....+..++..+... ....-+...+++-
T Consensus 496 lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p--~~~EneylmKaIm 573 (960)
T KOG1992|consen 496 LMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP--GKAENEYLMKAIM 573 (960)
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC--cccccHHHHHHHH
Confidence 3567777788888888887777777775321 12334566666666666555433 2244556778888
Q ss_pred HHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC----CchhhhHHhHHHHHHHHHhcCCc
Q 000194 668 CLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG----FGMRQYISELMPLIVEALLDGAA 743 (1880)
Q Consensus 668 ~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g----~~~~~~~~~l~p~l~~~l~d~~~ 743 (1880)
.++.-..+.+.|+.+.++..|.+.+...+....+|..-...++++|.+....+ ..+..+...++|.+...|+.. =
T Consensus 574 Rii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I 652 (960)
T KOG1992|consen 574 RIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSED-I 652 (960)
T ss_pred HHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH-H
Confidence 88888888999999998888887765432222466666677788887776443 346788889999999988732 1
Q ss_pred hhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHH---HHHHHHHHcccCccchhhccccCCCcc
Q 000194 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRRE---VLKVLGIMGALDPHAHKRNQQLSGSHG 820 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~---~l~~lg~lgaldp~~~~~~~~~~~~~~ 820 (1880)
.+----++.-++.+++..+..+- ..|..+++.|+ .+..|+.+.. .++++..+---+|...
T Consensus 653 ~EfiPYvfQlla~lve~~~~~ip--~~~~~l~~~lL----sp~lW~r~gNipalvrLl~aflk~g~~~~----------- 715 (960)
T KOG1992|consen 653 QEFIPYVFQLLAVLVEHSSGTIP--DSYSPLFPPLL----SPNLWKRSGNIPALVRLLQAFLKTGSQIV----------- 715 (960)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHhc----CHHHHhhcCCcHHHHHHHHHHHhcCchhh-----------
Confidence 12223568888998888776321 11223444443 3444443322 2222222100000000
Q ss_pred cccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC-CCCCcch
Q 000194 821 EVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPK 899 (1880)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~-~~~~l~~ 899 (1880)
. ..+ ....++..+-++...++. +|| ...-+..|+....+. ..||+.+
T Consensus 716 -------------~---------------~~~-~l~~iLGifqkLiaSka~-Dh~--GF~LLn~i~~~~~~~~~~py~k~ 763 (960)
T KOG1992|consen 716 -------------E---------------AAD-KLSGILGIFQKLIASKAN-DHH--GFYLLNTIIESIPPNELAPYMKQ 763 (960)
T ss_pred -------------c---------------ccc-cchhHHHHHHHHhcCccc-chh--HHHHHHHHHhcCCHhhhhHHHHH
Confidence 0 000 012334444444444443 233 556677777776554 4689999
Q ss_pred hhHHHHHHHhcCC
Q 000194 900 VLPDLFHTVRTCD 912 (1880)
Q Consensus 900 iip~ll~~l~~~~ 912 (1880)
|.-.+++.++++.
T Consensus 764 i~~llf~Rlqnsk 776 (960)
T KOG1992|consen 764 IFGLLFQRLQNSK 776 (960)
T ss_pred HHHHHHHHHhccC
Confidence 9999999998874
No 38
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=0.00084 Score=86.17 Aligned_cols=202 Identities=17% Similarity=0.161 Sum_probs=117.4
Q ss_pred hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000194 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1880)
Q Consensus 190 ~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1880)
.++..+++.++.+++|.+..||+.|++.++.... |.+ ......++..+++-+.-.++....|||+++|++|..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~----rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTS----RLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHc----cCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 4677888999999999999999999998886543 333 223344444444422222234678999999999986
Q ss_pred cchhhhHHHHHHHHHHHHHHh--------hcchhHHHHHHHHHhHhHhh-hChhhHHHHHHHHHHHHHHHhhcCC---CC
Q 000194 270 NTGEFMMSRYREVAEIVLRYL--------EHRDRLVRLSITSLLPRIAH-FLRDRFVTNYLKICMNHILTVLRIP---AE 337 (1880)
Q Consensus 270 ~~~~~~~~~~~~i~~~ll~~~--------~~~~~~Vr~~~~~~i~~la~-~~~~~f~~~yl~~~~~~Ll~~L~~~---~~ 337 (1880)
-. =.+...++++++.++..+ -.....||.+++-++=++++ |.+.+ .++|+..+.+.|+..--.+ .-
T Consensus 410 rG-lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~-l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 410 RG-LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD-LKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred cC-CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh-hhHHHHHHHHHHHHHHhcCchhhH
Confidence 32 233346666776665443 12356799988766555554 55544 4557787887776543222 23
Q ss_pred cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000194 338 RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1880)
Q Consensus 338 r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~ 410 (1880)
|-+|..|+-+....-|. .|+--+++..+- +..- ..--.|+..++..+. .|..|...+++.++.
T Consensus 488 RRAAsAAlqE~VGR~~n--~p~Gi~Lis~~d-y~sV------~~rsNcy~~l~~~ia-~~~~y~~~~f~~L~t 550 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGN--FPHGISLISTID-YFSV------TNRSNCYLDLCVSIA-EFSGYREPVFNHLLT 550 (1133)
T ss_pred hHHHHHHHHHHhccCCC--CCCchhhhhhcc-hhhh------hhhhhHHHHHhHHHH-hhhhHHHHHHHHHHh
Confidence 66666666664433332 244433332221 1100 012246666555542 345566666666654
No 39
>PRK09687 putative lyase; Provisional
Probab=98.93 E-value=1.9e-07 Score=108.66 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=138.7
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.|++..||..++.+|.. +..++.+..+..+++|+++.+|..++.+||.+...... ..+.+ ..|..
T Consensus 31 ~L~d~d~~vR~~A~~aL~~-------~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~-~~L~~ 97 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQL-------RGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVF-NILNN 97 (280)
T ss_pred HHhCCCHHHHHHHHHHHHh-------cCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHH-HHHHH
Confidence 3589999999999999952 12245677788888999999999999999998753211 11222 22222
Q ss_pred -HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH
Q 000194 649 -LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1880)
Q Consensus 649 -l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1880)
+.++ +++.+|..|+..||.+..... .+.+..+..+...+.++ ++.|+..++.++|.+..
T Consensus 98 l~~~D-~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~-----~~~VR~~a~~aLg~~~~---------- 157 (280)
T PRK09687 98 LALED-KSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDK-----STNVRFAVAFALSVIND---------- 157 (280)
T ss_pred HHhcC-CCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCC-----CHHHHHHHHHHHhccCC----------
Confidence 2445 688999999999999853321 12345666677777764 78899888888875421
Q ss_pred HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 728 ~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+..++.++..+.|. +..+|..|+.+||.+ +. ..|...+.|+..|.+ .++.||.+++..||.+|
T Consensus 158 ~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~----~~------~~~~~~~~L~~~L~D-~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 EAAIPLLINLLKDP-NGDVRNWAAFALNSN----KY------DNPDIREAFVAMLQD-KNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHhcC----CC------CCHHHHHHHHHHhcC-CChHHHHHHHHHHHccC
Confidence 46789999999987 568999999999986 11 236788889988864 47899999999998865
No 40
>PRK09687 putative lyase; Provisional
Probab=98.89 E-value=3e-07 Score=107.03 Aligned_cols=239 Identities=15% Similarity=0.107 Sum_probs=148.9
Q ss_pred HHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHH
Q 000194 482 VQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1880)
Q Consensus 482 ~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1880)
...|+..|+.+. . +-+...+..++.++++.+|..|+.+++++-.... ....+
T Consensus 40 R~~A~~aL~~~~---~---~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~----------------------~~~~a 91 (280)
T PRK09687 40 RISSIRVLQLRG---G---QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR----------------------CQDNV 91 (280)
T ss_pred HHHHHHHHHhcC---c---chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------------------chHHH
Confidence 344666666552 1 1233344566778888888888888777532110 01233
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHH
Q 000194 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1880)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1880)
++.|......|+++.||.+++.+|+.... ......+..+..+..++.|++..||..++..||.+.. + ...|
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~-~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-~ai~----- 162 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCK-KNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-AAIP----- 162 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccc-cccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-HHHH-----
Confidence 44444445688888888888888863110 0001124456667777888888888888888876542 1 1112
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1880)
.++..+. + +++.+|..|+..||.+.. --+.+.+.|+..+.+. +..|+..++.++|.+..
T Consensus 163 --~L~~~L~-d-~~~~VR~~A~~aLg~~~~--------~~~~~~~~L~~~L~D~-----~~~VR~~A~~aLg~~~~---- 221 (280)
T PRK09687 163 --LLINLLK-D-PNGDVRNWAAFALNSNKY--------DNPDIREAFVAMLQDK-----NEEIRIEAIIGLALRKD---- 221 (280)
T ss_pred --HHHHHhc-C-CCHHHHHHHHHHHhcCCC--------CCHHHHHHHHHHhcCC-----ChHHHHHHHHHHHccCC----
Confidence 2222233 3 567788888888887711 1235666677777764 77888888888776422
Q ss_pred chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
+..+|.+++.+.+.. .|..|+.+||.+ |. |..++.|.++++...+..+++.++.++.
T Consensus 222 ------~~av~~Li~~L~~~~---~~~~a~~ALg~i----g~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 ------KRVLSVLIKELKKGT---VGDLIIEAAGEL----GD--------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ------hhHHHHHHHHHcCCc---hHHHHHHHHHhc----CC--------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 367888888887642 677788888875 21 4677788888864557788887776653
No 41
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=0.00081 Score=86.30 Aligned_cols=443 Identities=17% Similarity=0.177 Sum_probs=220.6
Q ss_pred hhcCccchhchHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHHHhhhchh-------hHHHHHHHHHHHHHhh-ccCC
Q 000194 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVR--ERAVEALRACLRVIEKRETR-------WRVQWYYRMFEATQDG-LGRN 251 (1880)
Q Consensus 182 ~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR--~aA~~al~~~~~~i~~r~~~-------~~~~~~~~~l~~~~~~-l~~~ 251 (1880)
..-|..+-|+++.+++.+..-+++.....- ..+.+-+-.+..+ |... .....+..++.-+... =++.
T Consensus 60 QeqP~LLDp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kv---rgyK~v~k~fPh~V~~Le~il~lL~~~npss~ 136 (1133)
T KOG1943|consen 60 QEQPHLLDPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKV---RGYKAVLKLFPHQVSDLEPILDLLERQNPSSF 136 (1133)
T ss_pred hhchhhccchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhh---ccchhhHHhCCcHHHHHHHHHHHHhccCcchH
Confidence 347889999999999999888887765554 2233322222221 2111 1223344444444310 0112
Q ss_pred CChhHHHHHHHHHHHHHHcchhh--------hHH--HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000194 252 APVHSIHGSLLAVGELLRNTGEF--------MMS--RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1880)
Q Consensus 252 ~~~~~~~~al~~l~~ll~~~~~~--------~~~--~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl 321 (1880)
.+|+.+..-++.|..++-+.-++ ..| .+..++.....++.... ..|++++-+++.+-. .++-. .++
T Consensus 137 ~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~-~~r~~aalllsk~~s--R~D~~-~~~ 212 (1133)
T KOG1943|consen 137 SDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSG-ILRRSAALLLSKLFS--RTDVK-DLL 212 (1133)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHcc--cccHH-HHH
Confidence 35899999999999887643221 112 24445544444444444 677777766665431 11111 123
Q ss_pred HHHHHHHHHhhcCCCCc----chHHHHHHHHHhhchh-hhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHH-----
Q 000194 322 KICMNHILTVLRIPAER----DSGFIALGEMAGALDG-ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIAR----- 391 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~~~r----~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~----- 391 (1880)
-..+.+++.+-.....+ ..-+.++..+-..... +..||.+.....+-.+-...+.+ ...-.++-.+..
T Consensus 213 ~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~--~llrKllvKl~QRiGlv 290 (1133)
T KOG1943|consen 213 LSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQ--SLLRKLLVKLVQRIGLV 290 (1133)
T ss_pred HHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccH--hHHHHHHHHHHHHhhhe
Confidence 44444444333222222 1222333333222222 23344444443332221111100 000011111111
Q ss_pred ---------------------------------------HhCCCchHHHHHHHHHHHhcC-CCHH-----HHHHHHHHHH
Q 000194 392 ---------------------------------------AMGPVMEPHVRGLLDIMFSAG-LSTT-----LVDALEQITV 426 (1880)
Q Consensus 392 ---------------------------------------~~g~~~~~~l~~ll~~l~~~~-ls~~-----l~~~l~~i~~ 426 (1880)
.-|++...+++.+++.|++.- -++. ....+..+..
T Consensus 291 ~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~ 370 (1133)
T KOG1943|consen 291 SLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTS 370 (1133)
T ss_pred ecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHc
Confidence 123344456677777777541 1222 1223444445
Q ss_pred hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcch---hhH
Q 000194 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLL---EFA 503 (1880)
Q Consensus 427 ~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~---~~v 503 (1880)
..| +.+.+..++.+... +. | .++...-+.||-+|+++...|--+. +-|
T Consensus 371 rlp---~~Lad~vi~svid~-----~~---p------------------~e~~~aWHgacLaLAELA~rGlLlps~l~dV 421 (1133)
T KOG1943|consen 371 RLP---PELADQVIGSVIDL-----FN---P------------------AEDDSAWHGACLALAELALRGLLLPSLLEDV 421 (1133)
T ss_pred cCc---HHHHHHHHHHHHHh-----cC---c------------------CCchhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 555 33334333332211 10 0 0112233566777777654442221 222
Q ss_pred HHHHhhhccC--------CChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCCh
Q 000194 504 RDSVVLYLDD--------EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADV 575 (1880)
Q Consensus 504 ~~~~~~~l~~--------~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~ 575 (1880)
-..+..-+.. ....||.+|.-.|+.+... .+ . ....+++..+...|+.+++.|++.
T Consensus 422 vplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys--------------~-~~l~p~l~~L~s~LL~~AlFDrev 485 (1133)
T KOG1943|consen 422 VPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YS--------------P-SDLKPVLQSLASALLIVALFDREV 485 (1133)
T ss_pred HHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CC--------------h-hhhhHHHHHHHHHHHHHHhcCchh
Confidence 2222222221 2347999999888876632 11 0 113456777888899999999999
Q ss_pred hHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCC
Q 000194 576 TVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSA 654 (1880)
Q Consensus 576 ~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~ 654 (1880)
.+|.++..+|.+. .++.. -|.=++ |....++-+...|..+..-+++-...+|.+..|.++..+... +.+.
T Consensus 486 ncRRAAsAAlqE~VGR~~n---~p~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~K---v~HW-- 556 (1133)
T KOG1943|consen 486 NCRRAASAALQENVGRQGN---FPHGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKK---VCHW-- 556 (1133)
T ss_pred hHhHHHHHHHHHHhccCCC---CCCchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcc---cccc--
Confidence 9999998888421 12111 011112 122223334455777777777777777777767666543322 4454
Q ss_pred ChHhHHHHHHHHHHHHHhCccccc-CchHHHHHH
Q 000194 655 DNKCREESAKLLGCLIRNCERLIR-PYIAPIHKA 687 (1880)
Q Consensus 655 ~~~~r~~a~~~L~~l~~~~~~~~~-py~~~il~~ 687 (1880)
+...|+.+++.|..+....++.+. -|++++++.
T Consensus 557 d~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~ 590 (1133)
T KOG1943|consen 557 DVKIRELAAYALHKLSLTEPKYLADYVLPPLLDS 590 (1133)
T ss_pred cHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhh
Confidence 678889999999888877776665 345555443
No 42
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.84 E-value=1.8e-07 Score=127.79 Aligned_cols=271 Identities=21% Similarity=0.246 Sum_probs=176.3
Q ss_pred HHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
.+..+++|+++.||++|+.++..+-. ...++.|. .++.|+++.||..++.+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~---------------------------~~~~~~L~-~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP---------------------------PGFGPALV-AALGDGAAAVRRAAAEGL 676 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc---------------------------hhHHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 44577888999999998887765421 11223333 346899999999998888
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 586 ~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
.. +...+ ...+.|...++|+++.||..|+..|+.+....+ + .+ +..+. + +++.+|..|+..
T Consensus 677 ~~---l~~~~---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~----~----~l---~~~L~-D-~d~~VR~~Av~a 737 (897)
T PRK13800 677 RE---LVEVL---PPAPALRDHLGSPDPVVRAAALDVLRALRAGDA----A----LF---AAALG-D-PDHRVRIEAVRA 737 (897)
T ss_pred HH---HHhcc---CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCH----H----HH---HHHhc-C-CCHHHHHHHHHH
Confidence 41 11101 123456677888899999999999988653221 1 12 22233 3 578888888888
Q ss_pred HHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh
Q 000194 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
|+.+-. .+.++..+.|+ ++.|+..++.+|+.+....+ ..++.+...++|. +..
T Consensus 738 L~~~~~-------------~~~l~~~l~D~-----~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~-d~~ 790 (897)
T PRK13800 738 LVSVDD-------------VESVAGAATDE-----NREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDP-DPL 790 (897)
T ss_pred HhcccC-------------cHHHHHHhcCC-----CHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCC-CHH
Confidence 876511 02345566664 78899888888887643211 1256777778876 578
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCccccccc
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1880)
+|..|+.+|+.+- . + +.+...+...|+++ ++.||.+++++||.+|.
T Consensus 791 VR~aA~~aLg~~g----~---~----~~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~---------------------- 836 (897)
T PRK13800 791 VRAAALAALAELG----C---P----PDDVAAATAALRAS-AWQVRQGAARALAGAAA---------------------- 836 (897)
T ss_pred HHHHHHHHHHhcC----C---c----chhHHHHHHHhcCC-ChHHHHHHHHHHHhccc----------------------
Confidence 9999999998752 1 1 23445567777654 78999999998887652
Q ss_pred CCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHH
Q 000194 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLF 905 (1880)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll 905 (1880)
...+..|+..|+|++. .++..++.+|..+ +.-+...+.+.
T Consensus 837 ------------------------------~~a~~~L~~~L~D~~~-~VR~~A~~aL~~~---------~~~~~a~~~L~ 876 (897)
T PRK13800 837 ------------------------------DVAVPALVEALTDPHL-DVRKAAVLALTRW---------PGDPAARDALT 876 (897)
T ss_pred ------------------------------cchHHHHHHHhcCCCH-HHHHHHHHHHhcc---------CCCHHHHHHHH
Confidence 1123577888888875 3444666555543 12246778888
Q ss_pred HHHhcCCcchhHHHHHHHH
Q 000194 906 HTVRTCDDYLKDYITWKLG 924 (1880)
Q Consensus 906 ~~l~~~~~~~~~~~~~~l~ 924 (1880)
..+++.++.+|..+...|.
T Consensus 877 ~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 877 TALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHhCCCHHHHHHHHHHHh
Confidence 8888877778887766554
No 43
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=4.2e-07 Score=109.58 Aligned_cols=359 Identities=15% Similarity=0.123 Sum_probs=226.0
Q ss_pred CHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhcc
Q 000194 22 SLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDELIDV 99 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~Li~~ 99 (1880)
.....+..++.+.|.....+ .|...+++.... +..+.--.....-+.+++.+++. ..++..+.-|.-|+-.+..+
T Consensus 64 ~~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~---~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsg 140 (514)
T KOG0166|consen 64 QASNLELMLAALYSDDPQQQLTATQAFRKLLSK---ERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASG 140 (514)
T ss_pred HhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHcc---CCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcC
Confidence 33447778888887654333 366666666532 22221111111234566666665 45577888899998888766
Q ss_pred ccCcchhHHH-HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH--HHHHHHhhhcCCCcchhHHHHHHH
Q 000194 100 ALGENASKVS-KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF--QVKMALDWLRGDRVEYRRFAAVLI 176 (1880)
Q Consensus 100 ~~~~~~~~~~-~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~--~~~~~~~~l~~~~~~~~R~aA~~~ 176 (1880)
........+. ...+.+..++. +++.+|.+.|.|+||.+|..+... .++|-. .++.++..+.....-.-.+-+..+
T Consensus 141 tse~T~~vv~agavp~fi~Ll~-s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~ 218 (514)
T KOG0166|consen 141 TSEQTKVVVDAGAVPIFIQLLS-SPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATWT 218 (514)
T ss_pred chhhccccccCCchHHHHHHhc-CCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHHH
Confidence 4221111110 11234455554 668999999999999998864322 222221 455566665544333456667899
Q ss_pred HHHHHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH--HHHHHHHHHhhccCCCC
Q 000194 177 LKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNAP 253 (1880)
Q Consensus 177 l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~~l~~~~~~l~~~~~ 253 (1880)
|.-++.+. |.-=...+..++|.+...+.+.++.|...|+.|++.+.+. +....+. -..+++.+...|..++
T Consensus 219 LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-----~ne~iq~vi~~gvv~~LV~lL~~~~- 292 (514)
T KOG0166|consen 219 LSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-----SNEKIQMVIDAGVVPRLVDLLGHSS- 292 (514)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-----ChHHHHHHHHccchHHHHHHHcCCC-
Confidence 99999985 6554568899999999999999999999999999866432 2222222 2356777777777654
Q ss_pred hhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhh-cchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHH
Q 000194 254 VHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILT 330 (1880)
Q Consensus 254 ~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~-~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~ 330 (1880)
..++-.|+.++|-++.+.++...--++ ..++.+..++. ++...+|+.++++|..+++-.+++. +..+ ..++|.|+.
T Consensus 293 ~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qi-qaVida~l~p~Li~ 371 (514)
T KOG0166|consen 293 PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQI-QAVIDANLIPVLIN 371 (514)
T ss_pred cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHH-HHHHHcccHHHHHH
Confidence 355778888888876655533222222 13334444444 6777799999999999998666543 3233 588999999
Q ss_pred hhcCCC--CcchHHHHHHHHHhhchhhhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 331 VLRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 331 ~L~~~~--~r~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.|.+.. -|..|.-+|++++..-..+...|+ ..+++.+...|.-.+.+....++.++..|.+.
T Consensus 372 ~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 998765 467888999997655444555665 23666666666433333333566777766654
No 44
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=0.0027 Score=81.19 Aligned_cols=375 Identities=17% Similarity=0.179 Sum_probs=201.1
Q ss_pred HHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHH------hhhChHHHHHHHHHHHHHHHhhhcCCChhh-hhhHHHHH-
Q 000194 23 LDALNRILADLCTHG-NPKEGASLALRKHIEEQA------RDLGGEAFSRFMDQLYDRISGLLESNDAAE-NLGALRAI- 93 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~------~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~-r~~~i~ai- 93 (1880)
+++++.+-.-|.+.. +..=+|-..|+.++.+.= |.--.+-+..+++.|.+.+..++...+... .++-+...
T Consensus 126 p~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKi 205 (1010)
T KOG1991|consen 126 PGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKI 205 (1010)
T ss_pred hhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 445555555555543 233356666666665431 111122355667777777777777654321 12222221
Q ss_pred -hHhhc--cccC-cchhHHHHHHHHHHhhccc-------CCChHHH---------HHHHHHHHHHhhhCCCC---ch---
Q 000194 94 -DELID--VALG-ENASKVSKFSNYMRTVFEV-------KRDREIL---------VLASKVLGHLARAGGAM---TA--- 147 (1880)
Q Consensus 94 -~~Li~--~~~~-~~~~~~~~~~~~L~~~l~~-------~~d~~v~---------~~aa~~l~~L~~~~g~~---~~--- 147 (1880)
-+++- ++.. -+++....|......++.- .-|+++| +=|.-.+.|+-.-+|+. ..
T Consensus 206 fks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~ 285 (1010)
T KOG1991|consen 206 FKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYK 285 (1010)
T ss_pred HHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhH
Confidence 23322 2110 1344566677777776652 1244433 33444556665544332 11
Q ss_pred hH--------HHHHHHHHHhhhc--CCCcc-hhH--HHHHHHHHHHHhhcC--ccchhchHHHHHH-HHHHh--------
Q 000194 148 DE--------VEFQVKMALDWLR--GDRVE-YRR--FAAVLILKEMAENAS--TVFNVHVAEFVDA-IWVAL-------- 203 (1880)
Q Consensus 148 ~~--------v~~~~~~~~~~l~--~~~~~-~~R--~aA~~~l~~la~~~p--~~l~~~l~~i~~~-i~~~l-------- 203 (1880)
+| +...+...+..+. ..+-+ ..| .-++.++......+. +.+.||+.-|+.. |+..|
T Consensus 286 ~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~dee 365 (1010)
T KOG1991|consen 286 EFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEE 365 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHH
Confidence 11 1122222222221 11111 112 223333333332222 3678999998855 66655
Q ss_pred ---cCCchhHHH-------------HHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhcc-------CCCChhHHHHH
Q 000194 204 ---RDPTLAVRE-------------RAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLG-------RNAPVHSIHGS 260 (1880)
Q Consensus 204 ---~D~~~~VR~-------------aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~-------~~~~~~~~~~a 260 (1880)
.||+..||+ ||...+-.+ .+.|.. +-++++++-+.+-+. .+++.+.+.||
T Consensus 366 lwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~---~~KR~k----e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGA 438 (1010)
T KOG1991|consen 366 LWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTL---VSKRGK----ETLPKILSFIVDILTRYKEASPPNKNPRQKDGA 438 (1010)
T ss_pred HHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHH---HHhcch----hhhhhHHHHHHHHHHhhcccCCCccChhhhhhH
Confidence 266677772 333333322 222322 233333333332222 22346789999
Q ss_pred HHHHHHHHHcc--hhhhHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000194 261 LLAVGELLRNT--GEFMMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1880)
Q Consensus 261 l~~l~~ll~~~--~~~~~~~~~~i-~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1880)
+.+++.|.+.- ..-....++.+ ..-|+..++++--..|..+|+.++.++...-.. +.-+...+....++|.+.+
T Consensus 439 L~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~ 516 (1010)
T KOG1991|consen 439 LRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNE 516 (1010)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCc
Confidence 99999998621 11222333332 335556667777889999999999888532211 1234556666667776433
Q ss_pred --CcchHHHHHHHHHhhchh---hhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000194 337 --ERDSGFIALGEMAGALDG---ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1880)
Q Consensus 337 --~r~~a~~alg~la~~v~~---~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~ 409 (1880)
.|..|..||..+..+... .+.|++|++|+.+..-...-.. ...-.++..+...+++.+.||..++.+.|.
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En---d~Lt~vme~iV~~fseElsPfA~eL~q~La 591 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN---DDLTNVMEKIVCKFSEELSPFAVELCQNLA 591 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 467888888888777664 3889999999887765533221 356678888999999999999988877654
No 45
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.2e-05 Score=99.38 Aligned_cols=552 Identities=18% Similarity=0.157 Sum_probs=295.8
Q ss_pred CChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc----cchhchHHH-HH
Q 000194 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST----VFNVHVAEF-VD 197 (1880)
Q Consensus 123 ~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~----~l~~~l~~i-~~ 197 (1880)
+|...+..+..-+..++...|.... -...++.+-+.+ .+.. .++..+|++-++ .-.|.+..+ ++
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~-~~~d--------ev~~~~a~~~~~~~~~v~~~~~~~~ll~ 162 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT--RLELIPFLTEAE-DDED--------EVLLDLAEQLGTFLPDVGGPEYAHMLLP 162 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh--hhhhhhHHHHhc-cchh--------HHHHHHHHHhcccchhccchhHHHHhhH
Confidence 3455555555555555555443322 112233333332 1111 233344444333 333444444 45
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhH-HHHHHHHHHHHHHcch-hhh
Q 000194 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHS-IHGSLLAVGELLRNTG-EFM 275 (1880)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~al~~l~~ll~~~~-~~~ 275 (1880)
.+.....+....||+.+.+.+........+.. . ...+.+ +...+... +|.. |-.++-+++...-... +.+
T Consensus 163 ~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~--~----~~~lv~-l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~v 234 (759)
T KOG0211|consen 163 PLELLATVEETGVREKAVESLLKVAVGLPKEK--L----REHLVP-LLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAV 234 (759)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcChHH--H----HHHHHH-HHHHccch-hhhhcchhhhhhhHHhccCCChHHH
Confidence 56666678888999999998887665443211 1 112222 22222222 2332 3333344444433222 334
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhch
Q 000194 276 MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALD 353 (1880)
Q Consensus 276 ~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~ 353 (1880)
......++ -..-++.++.||.++..-++.+|...+.+.+. ..+++.+...+..+. .|..|+.+++.+.....
T Consensus 235 k~elr~~~---~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 235 KRELRPIV---QSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHH---HhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 43333333 33346889999999999999999887775443 455666666665443 58899999999887766
Q ss_pred hhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHH-HhcCCCHHHHHHHHHHHHhCCCCh
Q 000194 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIM-FSAGLSTTLVDALEQITVSIPSLL 432 (1880)
Q Consensus 354 ~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l-~~~~ls~~l~~~l~~i~~~~p~l~ 432 (1880)
... +....+.+.+.+...+...+.+.-+...+..+...+|+.... ..+.++. ...+..+..... +++..
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~--~~~~~~~~~l~~~~~~e~r~--a~a~~----- 378 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATR--TQLVPPVSNLLKDEEWEVRY--AIAKK----- 378 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCc--ccchhhHHHHhcchhhhhhH--Hhhcc-----
Confidence 532 333445555555554443333233344445566666662111 0001110 000110000000 00000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccC---CCcchhhHHHHHh
Q 000194 433 PTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFK---GHDLLEFARDSVV 508 (1880)
Q Consensus 433 ~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~~~---~~~l~~~v~~~~~ 508 (1880)
..-+...... .+. .....|+++.
T Consensus 379 --------------------------------------------------~~~l~~~l~~~~~~~i~~~~ilp~~~~--- 405 (759)
T KOG0211|consen 379 --------------------------------------------------VQKLACYLNASCYPNIPDSSILPEVQV--- 405 (759)
T ss_pred --------------------------------------------------hHHHhhhcCcccccccchhhhhHHHHH---
Confidence 0000000000 000 0111244443
Q ss_pred hhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc--
Q 000194 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY-- 586 (1880)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~-- 586 (1880)
+..+.+..||.+.+..+..+.. .+++. +.+...++-+ .....|.++.||..+..-+.
T Consensus 406 -lv~d~~~~vr~a~a~~~~~~~p---------~~~k~----------~ti~~llp~~-~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 406 -LVLDNALHVRSALASVITGLSP---------ILPKE----------RTISELLPLL-IGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred -HHhcccchHHHHHhccccccCc---------cCCcC----------cCccccChhh-hhhcchhhHHHHHhhHHHHHHH
Confidence 3455677888766543322211 11111 1122222222 22457888999988774321
Q ss_pred -C-CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 587 -G-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 587 -~-~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
. .........+...++.+.....|....+|.+.++.+..++.... ++++...+.+++..-..+ .....|+.|+.
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d-~v~~Ir~~aa~ 540 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPD-HVYSIREAAAR 540 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhh-hHHHHHHHHHH
Confidence 1 01111222234467777777778889999999999888887665 233333333333322222 34567889999
Q ss_pred HHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCch
Q 000194 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~ 744 (1880)
.+..++...| -.=+...+++.++....++ +.-.+.+.+.++..++.++|..+ +...++|.+.....|+ ..
T Consensus 541 ~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~-----~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~-va 610 (759)
T KOG0211|consen 541 NLPALVETFG--SEWARLEEIPKLLAMDLQD-----NYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDP-VA 610 (759)
T ss_pred HhHHHHHHhC--cchhHHHhhHHHHHHhcCc-----ccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCC-ch
Confidence 9999999888 2334556666666666553 56678888999999999999865 4578999999988887 57
Q ss_pred hhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 745 ~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
++|-++++.|-.+....... ..-..+.+.+ ..|..+++..+|..+..++|.+.
T Consensus 611 nVR~nvak~L~~i~~~L~~~----~~~~~v~pll-~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 611 NVRINVAKHLPKILKLLDES----VRDEEVLPLL-ETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hhhhhHHHHHHHHHhhcchH----HHHHHHHHHH-HHhccCcccchhHHHHHHHHHHH
Confidence 89999999999887655331 1112344443 44445667888988888888775
No 46
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=2.3e-06 Score=103.42 Aligned_cols=349 Identities=16% Similarity=0.150 Sum_probs=221.4
Q ss_pred ccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--C
Q 000194 511 LDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--N 588 (1880)
Q Consensus 511 l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~ 588 (1880)
+.++++..+..|..+.++++..... .+...-....+++.+++..-.+..+.++..+.-+|+- .
T Consensus 75 ~~S~~~~~q~~a~~~~rkllS~~~~---------------ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs 139 (514)
T KOG0166|consen 75 LYSDDPQQQLTATQAFRKLLSKERN---------------PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS 139 (514)
T ss_pred HhCCCHHHHHHHHHHHHHHHccCCC---------------CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc
Confidence 3344555566677777777754321 0112233456778888776667778888877665531 0
Q ss_pred CCc--chhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHH------HHHHHHHhcCCCChHhHH
Q 000194 589 RGF--DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQSSADNKCRE 660 (1880)
Q Consensus 589 ~~f--d~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~~~~~~~~r~ 660 (1880)
..- -........++.+..++..++..|++.|+++||.++...|. +|.++ ..++..+..+ .......
T Consensus 140 gtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-----~Rd~vl~~g~l~pLl~~l~~~-~~~~~lR 213 (514)
T KOG0166|consen 140 GTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-----CRDYVLSCGALDPLLRLLNKS-DKLSMLR 213 (514)
T ss_pred CchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-----HHHHHHhhcchHHHHHHhccc-cchHHHH
Confidence 000 01122334688888999999999999999999999988753 44443 3344444444 2224566
Q ss_pred HHHHHHHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH-hHHHHHHHHH
Q 000194 661 ESAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEAL 738 (1880)
Q Consensus 661 ~a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~l~p~l~~~l 738 (1880)
.+.|+|..+++.. |..-..-+.++++.|...+... +..|...++.++..|+....+.+.-.++ .++|.+++.|
T Consensus 214 n~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-----D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL 288 (514)
T KOG0166|consen 214 NATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-----DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL 288 (514)
T ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH
Confidence 8999999999875 3222233668888888888764 8889999999999998765554443333 5688999988
Q ss_pred hcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCC
Q 000194 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1880)
Q Consensus 739 ~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~ 818 (1880)
... +..++..|+.++|.++.+++....-- .....++.|..++.......+|.+|+.+++-|+|=.+...
T Consensus 289 ~~~-~~~v~~PaLRaiGNIvtG~d~QTq~v-i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qi--------- 357 (514)
T KOG0166|consen 289 GHS-SPKVVTPALRAIGNIVTGSDEQTQVV-INSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQI--------- 357 (514)
T ss_pred cCC-CcccccHHHhhccceeeccHHHHHHH-HhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHH---------
Confidence 755 45677889999999887765531111 1245788888888755566799999999999876221100
Q ss_pred cccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCc-
Q 000194 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL- 897 (1880)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l- 897 (1880)
..+ ...-+++.|+.+|+..... .+..++=||.++...-.+.-..||
T Consensus 358 ------------------qaV--------------ida~l~p~Li~~l~~~ef~-~rKEAawaIsN~ts~g~~~qi~yLv 404 (514)
T KOG0166|consen 358 ------------------QAV--------------IDANLIPVLINLLQTAEFD-IRKEAAWAISNLTSSGTPEQIKYLV 404 (514)
T ss_pred ------------------HHH--------------HHcccHHHHHHHHhccchH-HHHHHHHHHHhhcccCCHHHHHHHH
Confidence 000 1123456777777665543 344666666666544333334454
Q ss_pred -chhhHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 000194 898 -PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI 929 (1880)
Q Consensus 898 -~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~ 929 (1880)
..+++.|...+.-.+......++..+..+...
T Consensus 405 ~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 405 EQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 34778887777333334555566666665544
No 47
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.62 E-value=0.0062 Score=76.99 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhh---ccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCc
Q 000194 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFL---AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNP 631 (1880)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L---~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p 631 (1880)
.++...++...+.....|.-+-+|.+++.++.. -..+++ -+|.+++.|.+...+.+.+|-...++.|+..++.+|
T Consensus 485 ~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~--~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dp 562 (1005)
T KOG2274|consen 485 PQLLQHFLNATVNALTMDVPPPVKISAVRAFCG--YCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDP 562 (1005)
T ss_pred hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHh--ccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccCh
Confidence 456666777777777778788899999998852 001221 147789999999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHHHH-HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHH
Q 000194 632 AYVLPALRRHLIQLLTY-LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710 (1880)
Q Consensus 632 ~~v~p~l~~~l~~~l~~-l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~ 710 (1880)
..--..-.++....+.- +.++ +++..-..+-.++-++... ..-..|+....++.+++.+..+... ..+.....++.
T Consensus 563 ef~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~-~~~~l~~~aid 639 (1005)
T KOG2274|consen 563 EFAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADK-APAGLCAIAID 639 (1005)
T ss_pred hhhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccc-cCchhhHHHHH
Confidence 64211111111111111 3455 6776555555555555542 1223577788888888888765321 12444455556
Q ss_pred HHHHHHHhcCCch-hhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 711 TVGDLARVGGFGM-RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 711 ~l~~La~~~g~~~-~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
-|..+.+..+..+ ...+...+|.+.++.-...+.+.=.+|-.+|..++
T Consensus 640 vLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 640 VLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 6666667666544 33556667777776654434444444444444443
No 48
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=5.8e-05 Score=92.67 Aligned_cols=376 Identities=19% Similarity=0.182 Sum_probs=220.5
Q ss_pred hHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHH
Q 000194 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560 (1880)
Q Consensus 481 ~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1880)
..+.||++|+.+.. +...|.+.-.+-....|+.+.||+.||.++.+++..+++ -...+.+
T Consensus 124 iRasALRvlSsIRv--p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e------------------~k~qL~e 183 (968)
T KOG1060|consen 124 IRASALRVLSSIRV--PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE------------------QKDQLEE 183 (968)
T ss_pred HHHHHHHHHHhcch--hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh------------------hHHHHHH
Confidence 56899999999854 244566666666778899999999999999999976542 1123556
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhccCC--CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCC---c----
Q 000194 561 LVEKLLIAAVADADVTVRHSIFSSLYGN--RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN---P---- 631 (1880)
Q Consensus 561 vl~~Ll~~~~~d~~~~vR~~~l~~l~~~--~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~---p---- 631 (1880)
++++| ++|.++-|.-+++.+|.++ .+++ |-+ .+-+.+...+-|-+.==+...+..|-|.+.+. |
T Consensus 184 ~I~~L----LaD~splVvgsAv~AF~evCPerld--LIH-knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~ 256 (968)
T KOG1060|consen 184 VIKKL----LADRSPLVVGSAVMAFEEVCPERLD--LIH-KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVD 256 (968)
T ss_pred HHHHH----hcCCCCcchhHHHHHHHHhchhHHH--Hhh-HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccc
Confidence 66666 4899999999999999642 1221 111 12334444444432211233444444443321 1
Q ss_pred ---------------------cccc-HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHH
Q 000194 632 ---------------------AYVL-PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALV 689 (1880)
Q Consensus 632 ---------------------~~v~-p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll 689 (1880)
.++. |.+ +.+++....+..+ ..+.+--.++.++-.++-.. -+..|.+.|+
T Consensus 257 ~~~e~n~~~~~~~~~~~~~~~P~~~d~D~-~lLL~stkpLl~S-~n~sVVmA~aql~y~lAP~~------~~~~i~kaLv 328 (968)
T KOG1060|consen 257 SSLEDNGRSCNLKDKYNEIRTPYVNDPDL-KLLLQSTKPLLQS-RNPSVVMAVAQLFYHLAPKN------QVTKIAKALV 328 (968)
T ss_pred cccccCcccccccccccccCCCcccCccH-HHHHHhccHHHhc-CCcHHHHHHHhHHHhhCCHH------HHHHHHHHHH
Confidence 0111 222 3455555555555 44554445555555554322 2456778888
Q ss_pred HHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCC
Q 000194 690 ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYN 769 (1880)
Q Consensus 690 ~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~ 769 (1880)
..|+. ++.++..++.+|..++......|.||+..++- ...+....+.--+..|..++....
T Consensus 329 rLLrs------~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv------~ssDp~~vk~lKleiLs~La~esn------- 389 (968)
T KOG1060|consen 329 RLLRS------NREVQYVVLQNIATISIKRPTLFEPHLKSFFV------RSSDPTQVKILKLEILSNLANESN------- 389 (968)
T ss_pred HHHhc------CCcchhhhHHHHHHHHhcchhhhhhhhhceEe------ecCCHHHHHHHHHHHHHHHhhhcc-------
Confidence 88875 56677777888888988888888888776532 111222344444566666665432
Q ss_pred cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCC
Q 000194 770 EYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFAT 849 (1880)
Q Consensus 770 ~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 849 (1880)
.++++.-+...+++. +..+.-+++++||.+|... .
T Consensus 390 -i~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~-----------------------------------~-------- 424 (968)
T KOG1060|consen 390 -ISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRI-----------------------------------G-------- 424 (968)
T ss_pred -HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhh-----------------------------------C--------
Confidence 357788887777655 4468889999999987310 0
Q ss_pred CcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcC-CcchhHHHHHHHHHHHH
Q 000194 850 SEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTLVS 928 (1880)
Q Consensus 850 ~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~-~~~~~~~~~~~l~~lv~ 928 (1880)
-.++.+++.|+..|+..+-. .+.++++.|=+-+..+ ..-..+|+-.+...+.+- -|..|..++|.+|..+.
T Consensus 425 ---sv~~tCL~gLv~Llsshde~----Vv~eaV~vIk~Llq~~-p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 425 ---SVTDTCLNGLVQLLSSHDEL----VVAEAVVVIKRLLQKD-PAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred ---chhhHHHHHHHHHHhcccch----hHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 02367889999988765321 3455555544433332 122334555555555332 24457777777776665
Q ss_pred HHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 929 IVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 929 ~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
+ +-..+|+++..+.+.+.... +....+++.+...+
T Consensus 497 ~----vpri~PDVLR~laksFs~E~------~evKlQILnL~aKL 531 (968)
T KOG1060|consen 497 I----VPRIAPDVLRKLAKSFSDEG------DEVKLQILNLSAKL 531 (968)
T ss_pred h----cchhchHHHHHHHHhhcccc------chhhHHHHHhhhhh
Confidence 4 33456777777766665432 12233555555444
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.49 E-value=0.00029 Score=90.06 Aligned_cols=324 Identities=14% Similarity=0.192 Sum_probs=194.2
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-H
Q 000194 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-F 152 (1880)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~ 152 (1880)
+++.++.++.+.-.-+...|+.+++.. .......++.++|...+. .+++.|+..+++.+++++.+......-+++ .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL--SPDSLLPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 667776654444344445566665542 222336778889999997 568999999999999998864332221222 2
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc-hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH-VAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR 231 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~-l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1880)
.++.++..+. +.+.....+|..+|+.++.+.+.. ..- =+..++.+...+..++..+|..+.+.+..+...-.
T Consensus 120 l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~----- 192 (503)
T PF10508_consen 120 LLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP----- 192 (503)
T ss_pred HHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH-----
Confidence 4555555554 445566778889999999764321 111 01126667777777788899888887766544211
Q ss_pred hHHHHH--HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--hhhhHHHHHHHHHHHHHHhhc--chhHHH----HHH
Q 000194 232 WRVQWY--YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--GEFMMSRYREVAEIVLRYLEH--RDRLVR----LSI 301 (1880)
Q Consensus 232 ~~~~~~--~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--~~~~~~~~~~i~~~ll~~~~~--~~~~Vr----~~~ 301 (1880)
..-+.. ..+++.+...+.+. |.-++..++.++.+|.... -+|+... .+++.+...+.+ .++..+ -..
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~g~~yL~~~--gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAETPHGLQYLEQQ--GIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChhHHHHHHhC--CHHHHHHHHHhccccCCcccchhhhhH
Confidence 111222 24888888888884 5778999999999998832 1333321 244444444432 222111 123
Q ss_pred HHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchh-hhh-----hhhhHHHHHHHHhhcC
Q 000194 302 TSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDG-ELF-----HYLPTITSHLREAIAP 373 (1880)
Q Consensus 302 ~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~r~~a~~alg~la~~v~~-~~~-----p~l~~i~~~l~~~l~~ 373 (1880)
+...+.++...+..+...| +.++..+...+... ..+..|++++|.++..+.+ .+. +-+..++..+-.....
T Consensus 270 ~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~ 348 (503)
T PF10508_consen 270 MKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS 348 (503)
T ss_pred HHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC
Confidence 4566667777777776644 78888888777654 3588999999999977754 222 1223334444444433
Q ss_pred CCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Q 000194 374 RRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSA 411 (1880)
Q Consensus 374 ~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~ 411 (1880)
...+.+..+++|++.+...-.+.-..-+..+....+..
T Consensus 349 ~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 349 GSTELKLRALHALASILTSGTDRQDNDILSITESWYES 386 (503)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 33333457889999887644332333444555555543
No 50
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.48 E-value=0.0072 Score=80.34 Aligned_cols=149 Identities=14% Similarity=0.221 Sum_probs=115.9
Q ss_pred chhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
....++++++..+..+. +..-+.|--|+.+|..+++..|.++. -+.+...|-.-+.|.+..||+||.+-++.+.-
T Consensus 810 f~~sfD~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAaldLvGrfvl-- 884 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAALDLVGRFVL-- 884 (1692)
T ss_pred HHHhhHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHHHHHHhhhhh--
Confidence 34456777888887776 55568899999999999999888654 35677778899999999999999999886642
Q ss_pred hhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 226 ~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
..++.+.++|+.+..++.++. .-+|..++.++.++.+..++| +.+.++|..+++..++.+..|++.|+.++
T Consensus 885 ------~~~e~~~qyY~~i~erIlDtg-vsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf 955 (1692)
T KOG1020|consen 885 ------SIPELIFQYYDQIIERILDTG-VSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETF 955 (1692)
T ss_pred ------ccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 233466777888888888875 678999999999998876665 34567888888877777777888887766
Q ss_pred HhH
Q 000194 306 PRI 308 (1880)
Q Consensus 306 ~~l 308 (1880)
-.+
T Consensus 956 ~kl 958 (1692)
T KOG1020|consen 956 LKL 958 (1692)
T ss_pred HHH
Confidence 554
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.48 E-value=5.7e-06 Score=113.40 Aligned_cols=257 Identities=22% Similarity=0.170 Sum_probs=140.4
Q ss_pred chhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccc-cccCCccccccccchhHH
Q 000194 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSF-TQFGASRSNRTGGKRRRL 557 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 557 (1880)
......|+..|+.+.- +-..+.+...++|+++.||.+|+.++..+.......... ..+. .........+.+.
T Consensus 635 ~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~-~~d~~VR~~A~~a 707 (897)
T PRK13800 635 PGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLG-SPDPVVRAAALDV 707 (897)
T ss_pred HHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhc-CCCHHHHHHHHHH
Confidence 3345667777776621 112233446788999999999999988764211100000 0000 0000000001111
Q ss_pred HHHH---HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc
Q 000194 558 IEEL---VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV 634 (1880)
Q Consensus 558 ~~~v---l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v 634 (1880)
+..+ -...+...+.|+|+.||..++.+|.. ++. .+.|..+++|++.+||..+...|+.+....+..
T Consensus 708 L~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~---~~~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~- 776 (897)
T PRK13800 708 LRALRAGDAALFAAALGDPDHRVRIEAVRALVS---VDD-------VESVAGAATDENREVRIAVAKGLATLGAGGAPA- 776 (897)
T ss_pred HHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc---ccC-------cHHHHHHhcCCCHHHHHHHHHHHHHhccccchh-
Confidence 1100 00122234567777777777777752 111 233455677777788887777777776543311
Q ss_pred cHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHH
Q 000194 635 LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD 714 (1880)
Q Consensus 635 ~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~ 714 (1880)
.|. +..+..+ +++.+|..|+..|+.+... +.+...++..+.++ ++.|+..++.+|+.
T Consensus 777 ~~~--------L~~ll~D-~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~-----d~~VR~~Aa~aL~~ 833 (897)
T PRK13800 777 GDA--------VRALTGD-PDPLVRAAALAALAELGCP---------PDDVAAATAALRAS-----AWQVRQGAARALAG 833 (897)
T ss_pred HHH--------HHHHhcC-CCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCC-----ChHHHHHHHHHHHh
Confidence 111 1222233 4677777777777666221 11223455666654 67778777777765
Q ss_pred HHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHH
Q 000194 715 LARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREV 794 (1880)
Q Consensus 715 La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~ 794 (1880)
+.. ++.++.++..|.|. +..+|..|+.+|+.+ .+ -|...+.|...++ +.+..||.++
T Consensus 834 l~~----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~---~~--------~~~a~~~L~~al~-D~d~~Vr~~A 890 (897)
T PRK13800 834 AAA----------DVAVPALVEALTDP-HLDVRKAAVLALTRW---PG--------DPAARDALTTALT-DSDADVRAYA 890 (897)
T ss_pred ccc----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc---CC--------CHHHHHHHHHHHh-CCCHHHHHHH
Confidence 531 24457777777776 567888888888874 01 1455666666665 3477888888
Q ss_pred HHHHH
Q 000194 795 LKVLG 799 (1880)
Q Consensus 795 l~~lg 799 (1880)
.++|+
T Consensus 891 ~~aL~ 895 (897)
T PRK13800 891 RRALA 895 (897)
T ss_pred HHHHh
Confidence 77764
No 52
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.41 E-value=0.052 Score=78.39 Aligned_cols=184 Identities=18% Similarity=0.242 Sum_probs=114.2
Q ss_pred HHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHH
Q 000194 605 FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPI 684 (1880)
Q Consensus 605 ~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~i 684 (1880)
..++.|.++.+|......++ ..+.|....|.+-+.+... .++ +....++.+...+|.++...+..+.|++...
T Consensus 535 ~~aia~~~~~i~~~v~~~l~--~~~~~~laQ~~~lr~~~~a----l~~-~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~ 607 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN--ERFDAQLAQPDLLRLLFIA----LHD-ENFAIQELATVIIGRLSSYNPAYVLPSLRKT 607 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc--cchhhhhcCchhHHHHHHH----hhh-hhhhhHHhHHhhccccccccHHHHhHHHHHH
Confidence 35567888999888887776 2222222334333332222 223 3445567777788888777777777777766
Q ss_pred HHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc
Q 000194 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1880)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~ 764 (1880)
...+...+.-. ....+......-+..+......-+.+|++.++-.++..+++..+ .+-.+++.++|.++..+|..
T Consensus 608 ~l~~~s~l~~s----g~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s-~~~~~~~~~~~eL~~v~g~~ 682 (2341)
T KOG0891|consen 608 LLELLTELEFS----GMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSS-GVEKAVLETIGELCAVGGEE 682 (2341)
T ss_pred HHHHhchhhhc----chHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccch-hhHHHHHHHHHHHHHhccch
Confidence 65555555432 11111111111222222222334678888888888888887743 45557789999999999976
Q ss_pred cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 765 i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+..+.+ .++..+...+.+-.+..-|+++++++|.+.
T Consensus 683 ~~~~~~--~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 683 MVKWVD--ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred hhhccc--hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 666655 577777777754445677889999998874
No 53
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=0.0018 Score=83.80 Aligned_cols=524 Identities=15% Similarity=0.082 Sum_probs=284.8
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh
Q 000194 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~ 247 (1880)
..|..+...++.++-....-.. ...++|.+.... |....|+.+++.-++.+...+. .+++...+++.+...
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~------~~~~~~~ll~~le~l 167 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVERT--RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG------GPEYAHMLLPPLELL 167 (759)
T ss_pred hhhhhhhccccchhhhcccchh--hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc------chhHHHHhhHHHHhh
Confidence 3455554454444433222111 445666666777 8888999999888887765433 222333344444443
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHH
Q 000194 248 LGRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~ 326 (1880)
.... .+.+++.++..+..++.... +....++-.++..+. ...-..-|-.++.+++..+-..++.+++.- ..+
T Consensus 168 ~~~e-et~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~---~~d~~~sr~sacglf~~~~~~~~~~~vk~e---lr~ 240 (759)
T KOG0211|consen 168 ATVE-ETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLA---TGDWFQSRLSACGLFGKLYVSLPDDAVKRE---LRP 240 (759)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHcc---chhhhhcchhhhhhhHHhccCCChHHHHHH---HHH
Confidence 3332 46778888887777766332 222223222222221 111112344455566655555555555432 222
Q ss_pred HHHHhhcC--CCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHH
Q 000194 327 HILTVLRI--PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGL 404 (1880)
Q Consensus 327 ~Ll~~L~~--~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~l 404 (1880)
...+.-+. +..|..+..-+|.+|..++++.. ...+++...+-..+....++..++.++..+..-+..+. +....+
T Consensus 241 ~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~--~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~ 317 (759)
T KOG0211|consen 241 IVQSLCQDDTPMVRRAVASNLGNIAKVLESEIV--KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSL 317 (759)
T ss_pred HHHhhccccchhhHHHHHhhhHHHHHHHHHHHH--HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhh
Confidence 22222222 34578899999999999987421 22334444444444444556678888888777655432 333444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHH
Q 000194 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQL 484 (1880)
Q Consensus 405 l~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1880)
.+.+++..-++.-+. +..+.+...+.-
T Consensus 318 ~~~l~~~~~d~~~~v------------~~~~~~~~~~L~----------------------------------------- 344 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRV------------SYMVADKFSELS----------------------------------------- 344 (759)
T ss_pred hHHHHHHhcChhHHH------------HHHHhhhhhhHH-----------------------------------------
Confidence 444443211110000 000111111110
Q ss_pred HHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHH
Q 000194 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEK 564 (1880)
Q Consensus 485 Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 564 (1880)
..+|. . +.. +.........+.+...++|.+++.-+..+-...... ++.+ ... ..+++
T Consensus 345 --~~~~~-~--~~~--~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~----------~~~~--i~~---~~ilp- 401 (759)
T KOG0211|consen 345 --SAVGP-S--ATR--TQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS----------CYPN--IPD---SSILP- 401 (759)
T ss_pred --HHhcc-c--cCc--ccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc----------cccc--cch---hhhhH-
Confidence 00111 0 000 000112224456667788888776554443211100 0000 011 11122
Q ss_pred HHHHHhcCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHH
Q 000194 565 LLIAAVADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLI 643 (1880)
Q Consensus 565 Ll~~~~~d~~~~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~ 643 (1880)
-++..+.|++..||.+.......- ..+...-.-...++.....++|+.++||...++.+..+-..++..-.-.+.+.++
T Consensus 402 ~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slL 481 (759)
T KOG0211|consen 402 EVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLL 481 (759)
T ss_pred HHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhh
Confidence 233456899999998876654310 1110000012356667778999999999999987766655554322233344445
Q ss_pred HHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHH-hccCCCCCCChhHHHHHHHHHHHHHHhcCCc
Q 000194 644 QLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVAR-LLEGTGINANNGIISGVLVTVGDLARVGGFG 722 (1880)
Q Consensus 644 ~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~-l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~ 722 (1880)
..+.++..+ ..++.|....+.+..++...+ .+++.+.+..++.. +.+ .-..++.++...+-.++...|
T Consensus 482 p~i~el~~d-~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d-----~v~~Ir~~aa~~l~~l~~~~G-- 550 (759)
T KOG0211|consen 482 PAIVELAED-LLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPD-----HVYSIREAAARNLPALVETFG-- 550 (759)
T ss_pred hhhhhhccc-hhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhh-----hHHHHHHHHHHHhHHHHHHhC--
Confidence 555566544 457888888888888887766 34444444333333 333 256788888889999998888
Q ss_pred hhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 723 MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 723 ~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
-.-+...++|.++....+. +.-.|.+.+.++..++.-.|..+. ...+++.+..+.. +..+.||-.+++.+-.++
T Consensus 551 ~~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~----~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 551 SEWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEIT----CEDLLPVFLDLVK-DPVANVRINVAKHLPKIL 624 (759)
T ss_pred cchhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHH----HHHHhHHHHHhcc-CCchhhhhhHHHHHHHHH
Confidence 3345567788888877654 466888889999999988886532 2467888877665 557899999999887765
Q ss_pred c
Q 000194 803 A 803 (1880)
Q Consensus 803 a 803 (1880)
.
T Consensus 625 ~ 625 (759)
T KOG0211|consen 625 K 625 (759)
T ss_pred h
Confidence 3
No 54
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.025 Score=70.93 Aligned_cols=413 Identities=14% Similarity=0.172 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc-----C----CchhhhHH
Q 000194 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-----G----FGMRQYIS 728 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-----g----~~~~~~~~ 728 (1880)
.|..|+.++..+.++....+.+-+...++.++...... ++.++.-+..+++-+..++..+ | ..+.+..+
T Consensus 378 RRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~n--PS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~ 455 (960)
T KOG1992|consen 378 RRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKN--PSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVD 455 (960)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccC--CCccccccchhhhhhHHHHhhcchhhcceeeccccccHHH
Confidence 36678899999999887777777777777777655432 2334444555555555555443 2 12233222
Q ss_pred hHHHHHHHHHhc---CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccC
Q 000194 729 ELMPLIVEALLD---GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALD 805 (1880)
Q Consensus 729 ~l~p~l~~~l~d---~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgald 805 (1880)
-+...+..-|.. ......|..|++-+-..-.. +.| .+.-.+++.|.+.|+.+ +..|..=|..++-.+-.++
T Consensus 456 Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q----l~~-~~lm~~~p~li~~L~a~-s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 456 FFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ----LGK-EHLMALLPRLIRFLEAE-SRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHhhHHhccCccccccchhhcccceeeeeccc----CCh-HHHHHHHHHHHHhccCc-chHHHHHHHHHHHhccccc
Confidence 233333333332 11233444444332221111 111 12345777788888765 4455544444443321110
Q ss_pred ccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHH
Q 000194 806 PHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFI 885 (1880)
Q Consensus 806 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i 885 (1880)
++ ++. -+ . .+..-..|....+..|.+.++-|.- .-..-...|++.+
T Consensus 530 -----------e~----------~~~---~i--f-------~~~~iap~~~~ll~nLf~a~s~p~~-~EneylmKaImRi 575 (960)
T KOG1992|consen 530 -----------EN----------SNA---KI--F-------GAEDIAPFVEILLTNLFKALSLPGK-AENEYLMKAIMRI 575 (960)
T ss_pred -----------cC----------ccc---cc--c-------chhhcchHHHHHHHHHHHhccCCcc-cccHHHHHHHHHH
Confidence 00 000 00 0 0000112335566667766654432 3345688999999
Q ss_pred HHHhCCCCCCCcchhhHHHHHHHh----c-CCcchhHHHHHHHHHHHHHHHH----hHHHhHHHHHHHHHHhhcCCCCCc
Q 000194 886 FKSMGLGCVPYLPKVLPDLFHTVR----T-CDDYLKDYITWKLGTLVSIVRQ----HIRKYLQELFSLISELWSSFSLPA 956 (1880)
Q Consensus 886 ~~~~~~~~~~~l~~iip~ll~~l~----~-~~~~~~~~~~~~l~~lv~~~~~----~i~~y~~~i~~~i~~~~~~~~~~~ 956 (1880)
+........|+.+.+++.+.+.+. + ++|..--++|..+|.++...+. .+..+...+++.+...+...-
T Consensus 576 i~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI--- 652 (960)
T KOG1992|consen 576 ISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDI--- 652 (960)
T ss_pred HHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHH---
Confidence 988877778999988888876553 3 2445677888999999887753 245666666655554443210
Q ss_pred ccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHH-hcccccccCchhhHHHHHHHHHHHhcchh---hhhhhhHHH
Q 000194 957 TNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQ-VLSDAERCNDYTYVLDILHTLEVFGGTLD---EHMHLLLPA 1032 (1880)
Q Consensus 957 ~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~-~l~~~~~~~~~~~~~~il~~l~~~g~~~~---~~~~~ilp~ 1032 (1880)
...-..++++++.+...-+...-+....++|.++. .+=+ ++..-....++++++..-|+..- +.+..++..
T Consensus 653 ---~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~--r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGi 727 (960)
T KOG1992|consen 653 ---QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWK--RSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGI 727 (960)
T ss_pred ---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHh--hcCCcHHHHHHHHHHHhcCchhhcccccchhHHHH
Confidence 00011355566555554444222222333444331 1111 22233456677777766665432 345555666
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhhcccc---cccchhHhHHHHHHHhhCCCC-HHHHHHHHHHHHHHHHHhccccccchh
Q 000194 1033 LIRLFKVDAPVDIRRAAIETLTRLIPRV---QVTGHISSLVHHLKLVLDGKN-DELRKDAVDALCCLAHALGEDFTIFIP 1108 (1880)
Q Consensus 1033 l~~~l~~~~~~~vr~~ai~~l~~l~~~~---~~~~~~~~ii~~l~~~l~~~~-~~l~~~al~~L~~l~~~~g~~f~~fip 1108 (1880)
+.+++-+-..+ ......+..+.... .+.||...|...+.+=+++.. +...+..+-.++..+.+.|..+
T Consensus 728 fqkLiaSka~D---h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik~~~~~----- 799 (960)
T KOG1992|consen 728 FQKLIASKAND---HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIKKGGLM----- 799 (960)
T ss_pred HHHHhcCcccc---hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhhHH-----
Confidence 66665422112 34445555554443 356788888888777666543 5666777777777777777765
Q ss_pred HHHHHHHhCCCCchhHHHHHHHH
Q 000194 1109 SIHKLLLKHRLRHKEFEEIEGRL 1131 (1880)
Q Consensus 1109 ~i~~~l~~~~~~~~~~~~~~~~~ 1131 (1880)
+.+.+. +++...|..+.+++
T Consensus 800 -l~e~~d--~IQ~~~fg~l~e~~ 819 (960)
T KOG1992|consen 800 -LAEVID--GIQPGMFGMLLENF 819 (960)
T ss_pred -HHHHHh--hcchhHHHHHHHHh
Confidence 222222 24555555555444
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00087 Score=82.77 Aligned_cols=476 Identities=17% Similarity=0.180 Sum_probs=246.0
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH
Q 000194 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1880)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~ 152 (1880)
.+..|++|..-..|.-|+--|-+++.- |.+. ---|..-++++- +++.+|.+..=-=|-|-|+--..+.= +-=.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~--G~dv--S~~Fp~VVKNVa--skn~EVKkLVyvYLlrYAEeqpdLAL-LSIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAK--GKDV--SLLFPAVVKNVA--SKNIEVKKLVYVYLLRYAEEQPDLAL-LSIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhc--CCcH--HHHHHHHHHHhh--ccCHHHHHHHHHHHHHHhhcCCCcee-eeHH
Confidence 356788887777787777777777644 3321 223555666664 56899988877777777774222110 0001
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW 232 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~ 232 (1880)
.+++++ .|.+.-.|-.|+.++..+= .| -..+-++-+|-.+.+||.+.||..|+.|+-.+-+.
T Consensus 112 tfQk~L----~DpN~LiRasALRvlSsIR--vp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-------- 173 (968)
T KOG1060|consen 112 TFQKAL----KDPNQLIRASALRVLSSIR--VP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-------- 173 (968)
T ss_pred HHHhhh----cCCcHHHHHHHHHHHHhcc--hh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC--------
Confidence 122222 4566666766665554321 11 11222334566788999999999999998765432
Q ss_pred HHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC
Q 000194 233 RVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL 312 (1880)
Q Consensus 233 ~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~ 312 (1880)
.++.+..+.+.+..-|.+.+ .-+.-+|+.++.++.-..=+.+.++|+++|..+...-+=+ | +.+|..|.+|+
T Consensus 174 d~e~k~qL~e~I~~LLaD~s-plVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWg----Q---vvlI~mL~RYA 245 (968)
T KOG1060|consen 174 DPEQKDQLEEVIKKLLADRS-PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWG----Q---VVLINMLTRYA 245 (968)
T ss_pred ChhhHHHHHHHHHHHhcCCC-CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhh----H---HHHHHHHHHHH
Confidence 12233344554445556664 5678888888887755445788899999997665422211 1 11233333333
Q ss_pred hhhHHHHHH---------------------------HHHHHHHHHhhcCC-CCcc-hHHHHHHHHHhhchhhhhh--hhh
Q 000194 313 RDRFVTNYL---------------------------KICMNHILTVLRIP-AERD-SGFIALGEMAGALDGELFH--YLP 361 (1880)
Q Consensus 313 ~~~f~~~yl---------------------------~~~~~~Ll~~L~~~-~~r~-~a~~alg~la~~v~~~~~p--~l~ 361 (1880)
..+|.++.. ++=+..|+..++.- .-|. +...+...+-- .+.| -..
T Consensus 246 R~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y----~lAP~~~~~ 321 (968)
T KOG1060|consen 246 RHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFY----HLAPKNQVT 321 (968)
T ss_pred HhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHH----hhCCHHHHH
Confidence 333322200 11111222221100 0121 11111111100 1111 122
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHhCCCChHHHH
Q 000194 362 TITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALE-----QITVSIPSLLPTIQ 436 (1880)
Q Consensus 362 ~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~-----~i~~~~p~l~~~i~ 436 (1880)
.|.+.+...|.. +..++.-+++++..++.....-|.||+.... -+.-++.....++ .++..-. -+.|.
T Consensus 322 ~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v~ssDp~~vk~lKleiLs~La~esn--i~~IL 394 (968)
T KOG1060|consen 322 KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFF----VRSSDPTQVKILKLEILSNLANESN--ISEIL 394 (968)
T ss_pred HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceE----eecCCHHHHHHHHHHHHHHHhhhcc--HHHHH
Confidence 344444444422 2334456789999999887778899887531 1222333332222 1111000 00111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCCh
Q 000194 437 DRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDK 516 (1880)
Q Consensus 437 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~ 516 (1880)
..+...|. ..|.+.++.|.++||.+.-.-....+....-++.++.+.++
T Consensus 395 rE~q~YI~-------------------------------s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde 443 (968)
T KOG1060|consen 395 RELQTYIK-------------------------------SSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDE 443 (968)
T ss_pred HHHHHHHh-------------------------------cCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccc
Confidence 11111110 01223557788888887322122223333344556776788
Q ss_pred HHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc
Q 000194 517 ATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA 596 (1880)
Q Consensus 517 ~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~ 596 (1880)
.|--+|+..+..++..++.. -.+++.+|....-+-.-+.-|.+++=-+++.....+.+
T Consensus 444 ~Vv~eaV~vIk~Llq~~p~~---------------------h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri- 501 (968)
T KOG1060|consen 444 LVVAEAVVVIKRLLQKDPAE---------------------HLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRI- 501 (968)
T ss_pred hhHHHHHHHHHHHHhhChHH---------------------HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchh-
Confidence 88888888888888655411 12233333322111112344544444443211112222
Q ss_pred cHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHh
Q 000194 597 QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE 650 (1880)
Q Consensus 597 ~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~ 650 (1880)
-|++++.+...+.|+..+|+-..+.+-.+|--.++.. -+.+.+++.++.
T Consensus 502 ~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~-----~kll~~Yv~~L~ 550 (968)
T KOG1060|consen 502 APDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ-----TKLLVQYVFELA 550 (968)
T ss_pred chHHHHHHHHhhccccchhhHHHHHhhhhheEechhh-----HHHHHHHHHHHh
Confidence 2688999999999999999999999988887777654 344556655553
No 56
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.24 E-value=0.00033 Score=89.50 Aligned_cols=311 Identities=15% Similarity=0.152 Sum_probs=189.1
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH
Q 000194 29 ILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKV 108 (1880)
Q Consensus 29 l~~~l~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~ 108 (1880)
+|.+|.+.+.+.-. ...+++...+....++.. .+++...+...+++++...|.-++..+..++.-..+ ....+
T Consensus 43 lf~~L~~~~~e~v~---~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVE---LICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLL 115 (503)
T ss_pred HHHHHhhcChHHHH---HHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHh
Confidence 88889866432222 123444444455565554 444556666788899999999999998888654311 11111
Q ss_pred --HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc
Q 000194 109 --SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST 186 (1880)
Q Consensus 109 --~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~ 186 (1880)
......+..++. +.|.+|.+.|++++.+|+...... ..+++......+.-+-...++..|.-+..++..++..++.
T Consensus 116 ~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence 234556777774 679999999999999999863211 1222222222222222233455677788888899988888
Q ss_pred cchhch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh--hHHHHHHHHHHHHHhhccCC-CChhHHHHHHH
Q 000194 187 VFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR--WRVQWYYRMFEATQDGLGRN-APVHSIHGSLL 262 (1880)
Q Consensus 187 ~l~~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~--~~~~~~~~~l~~~~~~l~~~-~~~~~~~~al~ 262 (1880)
.+.-.. ..+++.++..+.+.+..||..|.+.+..+... . .... .+...+++++..+...-.++ ...-..-|.+.
T Consensus 194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~ 271 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-P-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK 271 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-h-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH
Confidence 764333 24999999999999999999999988877651 1 1100 11122334444333332232 11122334444
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh-hhHH-H---HHHHHHHHHHHHhhcCCC-
Q 000194 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR-DRFV-T---NYLKICMNHILTVLRIPA- 336 (1880)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~-~~f~-~---~yl~~~~~~Ll~~L~~~~- 336 (1880)
.++.+....+..+...++.++..+....++.++..+..|++++|.++.... ..+. . .-++.++..+.....+.+
T Consensus 272 f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 272 FFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 555565544445556778888888888899999999999999999985433 2222 1 122334444444444433
Q ss_pred -CcchHHHHHHHHHh
Q 000194 337 -ERDSGFIALGEMAG 350 (1880)
Q Consensus 337 -~r~~a~~alg~la~ 350 (1880)
-|..++.|++.+..
T Consensus 352 ~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 352 ELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHHHHHHHHh
Confidence 36778888888753
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.018 Score=72.17 Aligned_cols=408 Identities=18% Similarity=0.146 Sum_probs=202.8
Q ss_pred hhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHH
Q 000194 290 LEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1880)
Q Consensus 290 ~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1880)
++|.+..|...|+.+++.++. .+.. +.+.|.+-..|+..+ .|-.|..|.-.+...+++-+.-|++..
T Consensus 116 L~s~nq~vVglAL~alg~i~s---~Ema----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~---- 184 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICS---PEMA----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAF---- 184 (866)
T ss_pred ccCCCeeehHHHHHHhhccCC---HHHh----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHH----
Confidence 467788899999999998763 2333 455555556665443 588999999998888887554444443
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHH-------hcCCCHHHHHHHHHHHHhCCCChHHHHHHHH
Q 000194 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF-------SAGLSTTLVDALEQITVSIPSLLPTIQDRLL 440 (1880)
Q Consensus 368 ~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~-------~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll 440 (1880)
+..|.+++..+-...+..+..+++. +++...|...+.+.++ ..+.+++.-. ..+| .|-+|=+++
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv------~gi~--dPFLQi~iL 255 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV------HGIS--DPFLQIRIL 255 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc------cCCC--chHHHHHHH
Confidence 3344344444444566666666654 3333334444433332 1222211100 0111 133444445
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc----ccCCCcchhhHHHHHhhhcc-CCC
Q 000194 441 DCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF----NFKGHDLLEFARDSVVLYLD-DED 515 (1880)
Q Consensus 441 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~----~~~~~~l~~~v~~~~~~~l~-~~~ 515 (1880)
..+. +.|+... + ....=.+.|+.. +-+...-.-.+-+||..-++ .++
T Consensus 256 rlLr--iLGq~d~---------------------d-----aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~ 307 (866)
T KOG1062|consen 256 RLLR--ILGQNDA---------------------D-----ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSN 307 (866)
T ss_pred HHHH--HhcCCCc---------------------c-----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCC
Confidence 4444 1222100 0 000111222222 11111111233445544433 346
Q ss_pred hHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhh
Q 000194 516 KATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFL 595 (1880)
Q Consensus 516 ~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L 595 (1880)
.+.|..|+..+++++.+.- .++|.-++..|...-..|+..
T Consensus 308 ~~LrvlainiLgkFL~n~d----------------------------------------~NirYvaLn~L~r~V~~d~~a 347 (866)
T KOG1062|consen 308 SGLRVLAINILGKFLLNRD----------------------------------------NNIRYVALNMLLRVVQQDPTA 347 (866)
T ss_pred chHHHHHHHHHHHHhcCCc----------------------------------------cceeeeehhhHHhhhcCCcHH
Confidence 6777777777777665332 222222222221101112222
Q ss_pred ccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcc
Q 000194 596 AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER 675 (1880)
Q Consensus 596 ~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1880)
.| .+=..+..|++|++..+|+.|+++.-.|...+ .| +.++.+++..|..+ +..-|...+.-+..+++...+
T Consensus 348 vq-rHr~tIleCL~DpD~SIkrralELs~~lvn~~--Nv----~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 348 VQ-RHRSTILECLKDPDVSIKRRALELSYALVNES--NV----RVMVKELLEFLESS--DEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cH----HHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcCC
Confidence 11 23345677889999999999999999888765 23 33333444444444 566677888888899988766
Q ss_pred cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH-HHhcCCchhhHHHHHHHH
Q 000194 676 LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE-ALLDGAAVTKREVAVSTL 754 (1880)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~-~l~d~~~~~~r~~Al~~L 754 (1880)
.-+=|++.++.++...=.- .+.++..+.+.-| +...++.-..-...+.-.+.. .+.+.+....-..|.|++
T Consensus 419 ~k~W~idtml~Vl~~aG~~-----V~~dv~~nll~LI---a~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~I 490 (866)
T KOG1062|consen 419 DKRWHIDTMLKVLKTAGDF-----VNDDVVNNLLRLI---ANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCI 490 (866)
T ss_pred cchhHHHHHHHHHHhcccc-----cchhhHHHHHHHH---hcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Confidence 5555677766665443211 1333444433322 222122211111222222221 122222233457899999
Q ss_pred HHHHhhc---CcccccCC-cchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHc
Q 000194 755 GQVVQST---GYVITPYN-EYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIMG 802 (1880)
Q Consensus 755 g~l~~~~---~~~i~p~~-~~p~ll~~Ll~~L~~~~-~~~vr~~~l~~lg~lg 802 (1880)
|..-... +..-.|.. .-.+++..+...+.... +..++.=++.++-.+.
T Consensus 491 GEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 491 GEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred hhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 9644221 11112221 12468888888885443 4566655655555543
No 58
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.17 E-value=0.044 Score=77.54 Aligned_cols=499 Identities=15% Similarity=0.113 Sum_probs=256.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-----hhhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-----DVQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-----~~~~~~~~~ 1364 (1880)
.++....+.|.|..|+.+++...... +........+..+|...|+.+.+...+....... ........+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA------PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY 373 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45667778888889988887665432 2334566778889999999999988877543211 112234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWD 1444 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd 1444 (1880)
.+.|++++|+..|++.....++. ......+..|+...|+++.-.......... +++. .......+.+..+.|+++
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~-~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQL-DPEL-GRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhh-CCcc-hhhHHHHHHHHHhcCCHH
Confidence 88899999999999887643332 345567778888999987655444432211 1111 111224456777889998
Q ss_pred hHHHHHhhcCCCC--cc-hhhccccccccCCCCCchHHHHHHHHHHhcC-hhhhHHHHHHHHHHh-HhhhhHHHHHHhhc
Q 000194 1445 QMAEYVSRLDDGD--ES-KLRGLGNTAANGDGSSNGTFFRAVLLVRRGK-VLESYERAYSNMVRV-QQLSELEEVIDYCT 1519 (1880)
Q Consensus 1445 ~~~~~~~~~~~~~--~~-~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~-~~esy~ray~~l~~l-q~L~ELeE~i~~~~ 1519 (1880)
........+.... .. .+..++..... .+.+-+|+....+.. ....+..++..+..+ ....+.++.+++..
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLG-----KGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8777666543211 00 01111111100 001111111111100 000001111111111 11122222222111
Q ss_pred C-CCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 000194 1520 L-PVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQY 1598 (1880)
Q Consensus 1520 ~-~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~ 1598 (1880)
. ...++........+.... ....+++.-...+ +..+-....+...|+.++....+.|+++.|...+.++...
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLY-----LRTGNEEEAVAWL--EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHH-----HHcCCHHHHHHHH--HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 0 000000000000011110 0112222111111 1111112244678888999999999999999988887654
Q ss_pred CCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHH
Q 000194 1599 DPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKL 1678 (1880)
Q Consensus 1599 ~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l 1678 (1880)
.+ ..+......+..+...|+ ..+|+..+++.+...... ......++.++...
T Consensus 597 ~~----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 597 AP----------DSPEAWLMLGRAQLAAGD---LNKAVSSFKKLLALQPDS---------------ALALLLLADAYAVM 648 (899)
T ss_pred CC----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHc
Confidence 33 235667777888888884 678888888766431100 01112234444444
Q ss_pred hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH---------HHhhhccCCCCc------------
Q 000194 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV---------MSHYTLRGLPSV------------ 1737 (1880)
Q Consensus 1679 g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~---------~~~~~~~~~~~~------------ 1737 (1880)
|+ .++....|+++.+.+|+...+|..++....+. ++...... +..
T Consensus 649 ~~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 649 KN-------------YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred CC-------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 33 46677888888888888888888777664321 11000000 100
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH-HHHHHHHHhccCCC
Q 000194 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL-VVLPQIIARIHSNN 1816 (1880)
Q Consensus 1738 ~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl-~~ipQLiaRi~~~~ 1816 (1880)
...-...|++.|-+++... ++. +....+..++...|...+..+.+.+.+..-|.+... ..+-.+..+.+..+
T Consensus 715 ~~g~~~~A~~~~~~~~~~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRA-----PSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HCCCHHHHHHHHHHHHhhC-----CCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 0112357888888888764 222 556778888888898888877777777766655432 22223333333322
Q ss_pred hhHHHHHHHHHHHHHhhCchhhH--HHHHHH-hcCCcHHHHHHHHHHHHHHhhccc
Q 000194 1817 RAVRELIQSLLVRIGQSHPQALM--YPLLVA-CKSISNLRRAAAQEVVDKVRQHSG 1869 (1880)
Q Consensus 1817 ~~v~~~l~~lL~~i~~~hPqa~l--y~L~~~-~kS~~~~R~~~a~~Il~~~~~~~~ 1869 (1880)
-...++.++.+.+|.... ..+... .+... ..|...++++-...|
T Consensus 788 -----~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 788 -----KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKLAP 834 (899)
T ss_pred -----HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhhCC
Confidence 233445555566665432 222222 22222 227777777765444
No 59
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.17 E-value=0.04 Score=72.21 Aligned_cols=176 Identities=15% Similarity=0.175 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh-hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcC
Q 000194 706 SGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT-KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG 784 (1880)
Q Consensus 706 ~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~-~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~ 784 (1880)
.++-.++..++...|..+...++.+-..++..|++..+.. .-...+..+..+.-..+..+.| .-+.++.++..+++
T Consensus 751 rgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~---~~~~l~~l~~~~~s 827 (1549)
T KOG0392|consen 751 RGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHP---LGSLLPRLFFFVRS 827 (1549)
T ss_pred hhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhh---hhhhhhHHHHhccc
Confidence 4556678888888888888888888888888887433222 1112223333333222332333 12566677777765
Q ss_pred CCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHH
Q 000194 785 ELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMR 864 (1880)
Q Consensus 785 ~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~ 864 (1880)
. +..+|.++.+++|...... +.+ -...+++.++.
T Consensus 828 ~-~~a~r~~~ar~i~~~~k~~-----------------------------~~e----------------~m~~v~~~~~~ 861 (1549)
T KOG0392|consen 828 I-HIAVRYAAARCIGTMFKSA-----------------------------TRE----------------TMATVINGFLP 861 (1549)
T ss_pred c-hHHHHHHHHHHHHHHHHHH-----------------------------HHH----------------HHHHHHHHHhh
Confidence 4 7899999999999864210 000 01467788888
Q ss_pred HhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 000194 865 ILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV 930 (1880)
Q Consensus 865 ~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~ 930 (1880)
.+.|.+..+.+..+.+.+..+...++...+||.+-++|.++..+.+..+++|+.....++.++..+
T Consensus 862 ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~ 927 (1549)
T KOG0392|consen 862 LLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLL 927 (1549)
T ss_pred hccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhccc
Confidence 888776656666777777777777777789999999999999998888888998888877777544
No 60
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.14 E-value=2.1e-05 Score=74.79 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhc
Q 000194 169 RRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l 248 (1880)
.|.+++..|.+++.+.+..+.+|++.|++.|+.++.|++.+||..|+++|.++...... ..-.++..+++.+...+
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~----~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG----EILPYFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999876542 22336788999999888
Q ss_pred cCCCChhHHHHHHHHHHH
Q 000194 249 GRNAPVHSIHGSLLAVGE 266 (1880)
Q Consensus 249 ~~~~~~~~~~~al~~l~~ 266 (1880)
.+++ ..++.||- .|..
T Consensus 78 ~D~d-~~Vr~~a~-~Ld~ 93 (97)
T PF12755_consen 78 ADPD-ENVRSAAE-LLDR 93 (97)
T ss_pred cCCc-hhHHHHHH-HHHH
Confidence 8885 56677763 4433
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.09 E-value=0.0019 Score=80.89 Aligned_cols=300 Identities=14% Similarity=0.146 Sum_probs=192.0
Q ss_pred HHHHHHHHHcCCC--Cch--hhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHh-----hh--cCCCh-hhhhhHHHH
Q 000194 25 ALNRILADLCTHG--NPK--EGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISG-----LL--ESNDA-AENLGALRA 92 (1880)
Q Consensus 25 ~~~~l~~~l~s~~--~~~--~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~-----l~--~s~~~-~~r~~~i~a 92 (1880)
++.++++...+.. +.. ......+...+....+.++.+.-.++.++++..+.. -+ .++.. .....-+..
T Consensus 91 lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVIL 170 (415)
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHH
Confidence 4555665554332 111 223444667777778889988877777777665440 01 11111 112223333
Q ss_pred HhHh-hccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHH
Q 000194 93 IDEL-IDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRF 171 (1880)
Q Consensus 93 i~~L-i~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~ 171 (1880)
+..+ ..++..-..+....+.+-+..+.-...+...+..++++++.|+..-. ..+.++..++...+-+........|.
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~--~~~~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP--DDDDLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHhhhcccCCcchhH
Confidence 3333 44442222122333433333333235568889999999998887511 12233333444433332334456677
Q ss_pred HHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh---hch--h----hHHHHHHHHHH
Q 000194 172 AAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK---RET--R----WRVQWYYRMFE 242 (1880)
Q Consensus 172 aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~---r~~--~----~~~~~~~~~l~ 242 (1880)
.++.++..++.+.----.|...++++.++..+.| +.+...|+++++.++..... ++. . ++.+++..++|
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 8888887777663333346667788888888888 67788899999887654221 111 1 35566778888
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000194 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1880)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl 321 (1880)
.+.++..+.+ .+.+..-+.||.-++.+.+ +.+.++++++++.++..++..+..++.+++.++..+..-.++.+.+ |+
T Consensus 327 ~L~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~-hl 404 (415)
T PF12460_consen 327 KLLEGFKEAD-DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE-HL 404 (415)
T ss_pred HHHHHHhhcC-hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH-HH
Confidence 8888888764 3578888899999999654 6788999999999999999999999999999999998888765554 89
Q ss_pred HHHHHHHHH
Q 000194 322 KICMNHILT 330 (1880)
Q Consensus 322 ~~~~~~Ll~ 330 (1880)
+.+++.|+.
T Consensus 405 ~sLI~~LL~ 413 (415)
T PF12460_consen 405 SSLIPRLLK 413 (415)
T ss_pred HHHHHHHHh
Confidence 999998875
No 62
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.036 Score=68.55 Aligned_cols=231 Identities=23% Similarity=0.205 Sum_probs=118.3
Q ss_pred HHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHH
Q 000194 483 QLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELV 562 (1880)
Q Consensus 483 ~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 562 (1880)
-.||.-|++|.- +.+..-+-+-+..++.+.-+.||+-|+..+-+++..=+ ..+....
T Consensus 127 giAL~GLS~fvT--pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP---------------------eAlr~~F 183 (877)
T KOG1059|consen 127 GLALSGLSCIVT--PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP---------------------EALRPCF 183 (877)
T ss_pred hheecccccccC--chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh---------------------HhHhhhH
Confidence 568888888732 12222222334577888889999988876666553211 1122222
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHH
Q 000194 563 EKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL 642 (1880)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l 642 (1880)
+.|..-|.|+++.|..+|+..++.|+..||...+| |...+
T Consensus 184 ---------------------------------------prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-LAP~f 223 (877)
T KOG1059|consen 184 ---------------------------------------PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-LAPLF 223 (877)
T ss_pred ---------------------------------------HHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-ccHHH
Confidence 23334567888889999999999999999876543 22222
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHh---c
Q 000194 643 IQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV---G 719 (1880)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~---~ 719 (1880)
..+++ .+.+.+- -..-+.+++.|.---|.+-+..++++ ...+.. ..-.+-+.+|+..+..+ .
T Consensus 224 fkllt---tSsNNWm-LIKiiKLF~aLtplEPRLgKKLiepl----t~li~s-------T~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 224 YKLLV---TSSNNWV-LIKLLKLFAALTPLEPRLGKKLIEPI----TELMES-------TVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred HHHHh---ccCCCee-hHHHHHHHhhccccCchhhhhhhhHH----HHHHHh-------hHHHHHHHHHHHHheeehhcc
Confidence 22332 2212221 12233344444322233322323332 222221 11123334565554432 1
Q ss_pred C-CchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 720 G-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 720 g-~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
| .+-..-+.-.+.-+...+.| ++...|=.++-+++.+...+...+.. --+.+++.|. +.+..+|..|+.++
T Consensus 289 g~~d~~asiqLCvqKLr~fied-sDqNLKYlgLlam~KI~ktHp~~Vqa------~kdlIlrcL~-DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIED-SDQNLKYLGLLAMSKILKTHPKAVQA------HKDLILRCLD-DKDESIRLRALDLL 360 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhc-CCccHHHHHHHHHHHHhhhCHHHHHH------hHHHHHHHhc-cCCchhHHHHHHHH
Confidence 1 11111111122222223333 36677888888889888766544332 2345566664 45788998888776
Q ss_pred H
Q 000194 799 G 799 (1880)
Q Consensus 799 g 799 (1880)
-
T Consensus 361 ~ 361 (877)
T KOG1059|consen 361 Y 361 (877)
T ss_pred H
Confidence 3
No 63
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.96 E-value=0.32 Score=68.76 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
...|..++.+..+.|+++.|...+.++....|. ........+.+....|+ ..+|+..+++..
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~ 560 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK----------NLRAILALAGLYLRTGN---EEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 445555566666666666666655555443321 23344445555555553 345555555443
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.94 E-value=0.00023 Score=81.79 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=124.7
Q ss_pred CCCcchhHHHHHHHHHHHHhhc-----CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENA-----STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY 237 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~-----p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~ 237 (1880)
.+.+|..|..|+.-|+.+..+. +..+.+++.++++.+...+.|....|-..|+.++..+...+.. ....+.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----~~~~~~ 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----HFEPYA 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG----GGHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH----hHHHHH
Confidence 6788999999999999998876 3345566777778999999999999999999999888776653 234568
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i-~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~--- 313 (1880)
..++|.++..+++++ ..++.+|..+|..++..++ +...+ ...+.....++++.+|..++..+..+....+
T Consensus 93 ~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 93 DILLPPLLKKLGDSK-KFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 889999999888875 5778888889999988554 11233 4455566789999999999998888765444
Q ss_pred hhHHH-HHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000194 314 DRFVT-NYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1880)
Q Consensus 314 ~~f~~-~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~ 355 (1880)
..+.. .+++.+.+.+...+.+++ .|..|-.++..+....|+.
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 33322 245788888888887654 5899999999998888874
No 65
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.91 E-value=0.017 Score=72.54 Aligned_cols=343 Identities=11% Similarity=0.112 Sum_probs=192.4
Q ss_pred hHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccCcc-hhHHHHHHH--HHHhhcc-------cCC--ChH
Q 000194 60 GEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVALGEN-ASKVSKFSN--YMRTVFE-------VKR--DRE 126 (1880)
Q Consensus 60 ~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~~~-~~~~~~~~~--~L~~~l~-------~~~--d~~ 126 (1880)
++-+......|.+++...+++ .+...-.+.+.++-.+++-...+. ......+.+ .+..++. ... |..
T Consensus 33 ~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~ 112 (415)
T PF12460_consen 33 PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDR 112 (415)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchH
Confidence 334566666666666666654 233344445555555544321111 111112211 1222221 122 468
Q ss_pred HHHHHHHHHHHHhhhC-CCCchhHHHHHHHHHH-----hhhcCCCc---chhHHHHHHHHHHHHhhcCccchhchHHHHH
Q 000194 127 ILVLASKVLGHLARAG-GAMTADEVEFQVKMAL-----DWLRGDRV---EYRRFAAVLILKEMAENASTVFNVHVAEFVD 197 (1880)
Q Consensus 127 v~~~aa~~l~~L~~~~-g~~~~~~v~~~~~~~~-----~~l~~~~~---~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~ 197 (1880)
+...++..++.++..- .....++++......+ .-++.+.. +..+..-.++-+.++.--|+.-.|...+++.
T Consensus 113 ~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~ 192 (415)
T PF12460_consen 113 VLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQ 192 (415)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHH
Confidence 8888888888887752 2223334333333222 00011111 1222222333344444445555567778888
Q ss_pred HHHHHh-cCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhH
Q 000194 198 AIWVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276 (1880)
Q Consensus 198 ~i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~ 276 (1880)
.+.... ...++.+|.+++.+++.++.-.. .. +.+..+++.....+.+..+...+..++.++.-+..+-=--..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~--~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWP--DD----DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCC--Ch----hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 777644 45558889988887776543211 11 134445554444441111233455555554333221000011
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh------------hHHHHHHHHHHHHHHHhhcCCC--CcchHH
Q 000194 277 SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD------------RFVTNYLKICMNHILTVLRIPA--ERDSGF 342 (1880)
Q Consensus 277 ~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~------------~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~ 342 (1880)
|...++...++..+++ +.+...+...++.+....++ -+-..++..++|.+++..+... .|...+
T Consensus 267 ~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 267 PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence 3444455566666666 66777777777777654221 1223467778888877776544 478899
Q ss_pred HHHHHHHhhchhhh-hhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000194 343 IALGEMAGALDGEL-FHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1880)
Q Consensus 343 ~alg~la~~v~~~~-~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~ 410 (1880)
.|++.+...++..+ .++++.+++.+.++|...+.+....+++++..+.+.-.+.+.+|+..+++.|++
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99999999999874 499999999999999665554556788888888877666788899999998774
No 66
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.90 E-value=0.00018 Score=92.37 Aligned_cols=218 Identities=14% Similarity=0.152 Sum_probs=143.1
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
....|.+|+.+|..++....+ ...+..|+|.++..++|+.+.||-.|..+|.+++..+.+-.+....-+..-++|.+.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 345688888888888876544 346889999999999999999999999999999988875332222223345667666
Q ss_pred hhccCCCChhHHHHHHHHHHHHHH-------------cch----------------hhhHHHHHHHHHHHHHHhhcchhH
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLR-------------NTG----------------EFMMSRYREVAEIVLRYLEHRDRL 296 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~-------------~~~----------------~~~~~~~~~i~~~ll~~~~~~~~~ 296 (1880)
.-+.+++..-+|.+-...|+.|+. +.| .....-..-+-+.+..++.+.++.
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~ 593 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPI 593 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchH
Confidence 655553222223322223333222 111 011122222334566667788899
Q ss_pred HHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhhHHHHHHHHhhcC
Q 000194 297 VRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTITSHLREAIAP 373 (1880)
Q Consensus 297 Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~-~~p~l~~i~~~l~~~l~~ 373 (1880)
||++.++.|..|+.|=+.+ .-=+-++++|.+.|.+.+ .|++-|+.|.-++..||.. .. +.+++.++++|++
T Consensus 594 Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLTD 667 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhccC
Confidence 9999999999998753321 112568889999996543 4889999999888889874 33 3456777889987
Q ss_pred CCCCCCchHHHHHHHHHH
Q 000194 374 RRGKPSLEALACVGNIAR 391 (1880)
Q Consensus 374 ~~~~~~~~a~~~l~~la~ 391 (1880)
...-+-..|+.|+..|++
T Consensus 668 ~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 668 GEEAVIVSALGSLSILIK 685 (1431)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 654444567777776665
No 67
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.85 E-value=0.0002 Score=82.35 Aligned_cols=180 Identities=19% Similarity=0.236 Sum_probs=118.4
Q ss_pred CCCCHhHHHHHHHHHHhhhcCC-----cccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHH
Q 000194 609 NDEDFDVREYAISVAGRLSEKN-----PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1880)
Q Consensus 609 ~D~~~~VR~~a~~~l~~l~~~~-----p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1880)
.+.+.+.|..|+.-|.+++..+ +..+.+.+++++..+...+.+. -......|+.++..++...+..+.||++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 5667788888888888777766 2233344453333333333221 23455689999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhH-HHHHHHHHhcCCchhhHHHHHHHHHHHHhhcC
Q 000194 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISEL-MPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l-~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~ 762 (1880)
+++.|+..+.+. ...++..+..|+..+....+ +.+.+ .+.+...+.+. +...|..++..+..++...+
T Consensus 95 ~l~~Ll~~~~~~-----~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 95 LLPPLLKKLGDS-----KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSK-NPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHGGG--------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcc
Confidence 999999999975 56788888899998887644 33455 55666666654 68899999999999998888
Q ss_pred ---cccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 763 ---YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 763 ---~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
..+.....++.+.+.+...+.+ .+++||..+-+++..+-
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALY 205 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHH
T ss_pred chHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
Confidence 3333322346788888888864 58999999999988763
No 68
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.059 Score=63.41 Aligned_cols=179 Identities=18% Similarity=0.258 Sum_probs=117.2
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhc----CCcc--cccHHHHHH-HHHHHHH-HhcCCCChHhHHHHHHHHHHHHH
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSE----KNPA--YVLPALRRH-LIQLLTY-LEQSSADNKCREESAKLLGCLIR 671 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~----~~p~--~v~p~l~~~-l~~~l~~-l~~~~~~~~~r~~a~~~L~~l~~ 671 (1880)
....+...+.|....+|..+...+|.+.. ..|. .....+-.. +...+.. .+.+-...+++.+|.+.||.+..
T Consensus 434 aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 434 AANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 34556677788889999999998887654 3332 111111111 1111111 11111234678889999999987
Q ss_pred hCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC--CchhhhHHhHHHHHHHHHhcCCchhhHHH
Q 000194 672 NCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG--FGMRQYISELMPLIVEALLDGAAVTKREV 749 (1880)
Q Consensus 672 ~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g--~~~~~~~~~l~p~l~~~l~d~~~~~~r~~ 749 (1880)
......++-+..+++.-+..+.+.........|+-++++++|.|...-. -+-.++.++++|+++..+.+..+..+|..
T Consensus 514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 7666666666667766666655443223466789999999999986533 34578899999999999998878889999
Q ss_pred HHHHHHHHHhhcCcccccCCcchHHHHHHHHHh
Q 000194 750 AVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1880)
Q Consensus 750 Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L 782 (1880)
|..+|..-....|+ +.+||-....++.+|
T Consensus 594 AA~aL~vp~~re~~----~d~~~Lsw~~lv~aL 622 (728)
T KOG4535|consen 594 AAAALSVPGKREQY----GDQYALSWNALVTAL 622 (728)
T ss_pred hhhhhcCCCCcccc----hhHHhHHHHHHHHHH
Confidence 99999876554443 234555666666555
No 69
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.035 Score=69.35 Aligned_cols=258 Identities=15% Similarity=0.170 Sum_probs=152.2
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh-----cCCchhHHHH-HHHHHHHHHHHHhhhchhhHHHHHH-HH
Q 000194 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-----RDPTLAVRER-AVEALRACLRVIEKRETRWRVQWYY-RM 240 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l-----~D~~~~VR~a-A~~al~~~~~~i~~r~~~~~~~~~~-~~ 240 (1880)
+.|=+|=-++..+-+.-...+.|++-.++....... .|-+..+++. ...|.+.....+.+ .-...+|+. .+
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~--~~dF~~Wl~~~l 489 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSN--ILDFDKWLQEAL 489 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHhh
Confidence 455555555555555555555565555554444433 2334445544 45555554444432 113456764 45
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHhHhHh---hhChhh
Q 000194 241 FEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHR-DRLVRLSITSLLPRIA---HFLRDR 315 (1880)
Q Consensus 241 l~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~-~~~Vr~~~~~~i~~la---~~~~~~ 315 (1880)
+|++.. ..+..+-.|...+..+|.=+. ...+.+.+ -++..++..+++. +..||-++..++..+. .|.++.
T Consensus 490 lpEl~~--~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~---l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 490 LPELAN--DHGNSRIIRRRVAWILGQWVSVQQKLELKP---LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred CHHhhh--cccchhHHHHHHHHHHhhhhheechHhHHH---HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence 666652 111123445555566776555 22222222 2344556666665 7788999988888776 477888
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC--CchHHHHHHHHH
Q 000194 316 FVTNYLKICMNHILTVLRIP---AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIA 390 (1880)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~---~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~--~~~a~~~l~~la 390 (1880)
|.+ |++.+...+...+..- +.|...+..+|.+...+++.+.||...|++.+-.--......+ +.+.+..+-.++
T Consensus 565 Flp-~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 565 FLP-YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhh-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 875 8888888888888643 3588999999999999999888998887765544332222222 346677888899
Q ss_pred HHhCC---CchHHHHHHHHHHHhc--C----CCHHHHHHHHHHHHhCCCChH
Q 000194 391 RAMGP---VMEPHVRGLLDIMFSA--G----LSTTLVDALEQITVSIPSLLP 433 (1880)
Q Consensus 391 ~~~g~---~~~~~l~~ll~~l~~~--~----ls~~l~~~l~~i~~~~p~l~~ 433 (1880)
.++|. .+.|++-.+++.-..- + +.++..+-+...-.++|.+-|
T Consensus 644 ~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p 695 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTP 695 (978)
T ss_pred HHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCH
Confidence 99996 3667776666543221 1 233334444444445554443
No 70
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.77 E-value=0.00013 Score=69.44 Aligned_cols=88 Identities=20% Similarity=0.078 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCc
Q 000194 128 LVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT 207 (1880)
Q Consensus 128 ~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~ 207 (1880)
++.+..+|...+..-|....++++..++.++..+ ++.+++.|++|+..|..++..+...+.+|+++|++.+++.+.|++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3445556666665555567889999999999877 567778999999999999999999999999999999999999999
Q ss_pred hhHHHHHHH
Q 000194 208 LAVRERAVE 216 (1880)
Q Consensus 208 ~~VR~aA~~ 216 (1880)
+.||.+|.-
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 999998843
No 71
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.74 E-value=0.11 Score=69.95 Aligned_cols=132 Identities=17% Similarity=0.286 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch-hhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc
Q 000194 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD-FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY 633 (1880)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~-~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1880)
.+.++..+..++.. +.+|...+|..++.+|+.-...|+ .|+.+++-..+-.-++|.+..||++|++++|+.+-.+|..
T Consensus 811 ~~sfD~yLk~Il~~-l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 811 SQSFDPYLKLILSV-LGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHhhHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 44567777666554 569999999999999964233344 3567777788888899999999999999999999999876
Q ss_pred ccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccC
Q 000194 634 VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1880)
Q Consensus 634 v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1880)
+..+..+ +...+.+ +...+|..+++.+.++....|++-+ +..+.--++.+..|+
T Consensus 890 ~~qyY~~----i~erIlD--tgvsVRKRvIKIlrdic~e~pdf~~--i~~~cakmlrRv~DE 943 (1692)
T KOG1020|consen 890 IFQYYDQ----IIERILD--TGVSVRKRVIKILRDICEETPDFSK--IVDMCAKMLRRVNDE 943 (1692)
T ss_pred HHHHHHH----HHhhcCC--CchhHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHhccc
Confidence 6555443 3334433 4567889999999999998876521 234444445555554
No 72
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.048 Score=68.64 Aligned_cols=312 Identities=16% Similarity=0.172 Sum_probs=165.8
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh
Q 000194 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~ 183 (1880)
.+.+++..++-+.+++. ..|+-+++.|+-|+-|+... .+++++..+...-..|. +++.+.=.+++.++-++++.
T Consensus 136 s~EmardlapeVe~Ll~-~~~~~irKKA~Lca~r~irK----~P~l~e~f~~~~~~lL~-ek~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 136 SPEMARDLAPEVERLLQ-HRDPYIRKKAALCAVRFIRK----VPDLVEHFVIAFRKLLC-EKHHGVLIAGLHLITELCKI 209 (866)
T ss_pred CHHHhHHhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHc----CchHHHHhhHHHHHHHh-hcCCceeeeHHHHHHHHHhc
Confidence 34567777888888886 47899999999999999985 67777777777776664 34556678899999999998
Q ss_pred cCcc---chhchHHHHHHHHH-------------HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh
Q 000194 184 ASTV---FNVHVAEFVDAIWV-------------ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1880)
Q Consensus 184 ~p~~---l~~~l~~i~~~i~~-------------~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~ 247 (1880)
.|+. |...+++++..+-+ ++.|| -++..... +++++.+.+. .-.+.+..++.++...
T Consensus 210 ~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dP--FLQi~iLr----lLriLGq~d~-daSd~M~DiLaqvatn 282 (866)
T KOG1062|consen 210 SPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDP--FLQIRILR----LLRILGQNDA-DASDLMNDILAQVATN 282 (866)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCch--HHHHHHHH----HHHHhcCCCc-cHHHHHHHHHHHHHhc
Confidence 7764 33333333332211 12233 33333333 3334443222 2334455555555443
Q ss_pred ccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHH
Q 000194 248 LGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICM 325 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~l-l~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~ 325 (1880)
-.++. .++=.+|-+.++ ...=...+-+..+.-.+ -+++.+++..+|..+++.+.++...++....+ + =
T Consensus 283 tdssk-----N~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-H----r 352 (866)
T KOG1062|consen 283 TDSSK-----NAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-H----R 352 (866)
T ss_pred ccccc-----cchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-H----H
Confidence 33221 111112222222 11101112222222222 23345677778888888888877777654322 2 2
Q ss_pred HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHH
Q 000194 326 NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRG 403 (1880)
Q Consensus 326 ~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ 403 (1880)
..++.+|+.++ -|..|++-+-.+...- -+..+++.+.+.|.....+.......-+..+++.+.|+=.=|++.
T Consensus 353 ~tIleCL~DpD~SIkrralELs~~lvn~~------Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idt 426 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALELSYALVNES------NVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDT 426 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhccc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 34567777664 3556666554443222 233444555555532221212233333344455444432225555
Q ss_pred HHHHHHhcC--CCHHHHH-HHHHHHHhCCCChHHHHHHHHHHHH
Q 000194 404 LLDIMFSAG--LSTTLVD-ALEQITVSIPSLLPTIQDRLLDCIS 444 (1880)
Q Consensus 404 ll~~l~~~~--ls~~l~~-~l~~i~~~~p~l~~~i~~~ll~~l~ 444 (1880)
.+.-+-..| ..++... -++-|+..++.+..+...++...++
T Consensus 427 ml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~ 470 (866)
T KOG1062|consen 427 MLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALS 470 (866)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence 444333344 4555554 4455566667777777777776665
No 73
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.74 E-value=0.33 Score=62.19 Aligned_cols=141 Identities=13% Similarity=0.118 Sum_probs=92.4
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh---
Q 000194 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF--- 274 (1880)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~--- 274 (1880)
.++.+..++++.+|.+|...+++... ...+...+.+.+.++.. +-..|++|+..|...++..|..
T Consensus 8 ~~L~~~ls~d~~vr~~AE~~l~qle~---------~~~f~~aL~~va~~~~~---sl~lRQ~A~v~L~~yie~hW~~~~E 75 (1005)
T KOG2274|consen 8 ELLSGSLSADQNVRSQAETQLKQLEL---------TEGFGVALAEVAANKDA---SLPLRQIALVLLKRYIEKHWSPNFE 75 (1005)
T ss_pred HHHHhhcCCChhHHHHHHHHHhcccc---------chHHHHHHHHHHhCccc---CchHHHHHHHHHHHHHHHhCCChHh
Confidence 34567789999999999998876421 11233344444443322 2456888888888888854411
Q ss_pred -------hHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC--cchHHHH
Q 000194 275 -------MMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIA 344 (1880)
Q Consensus 275 -------~~~~~~~i-~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~--r~~a~~a 344 (1880)
.......+ -+.++..+.+.+..+|.++..++..+|.++-. .-++++++.++..+...++ -..|+++
T Consensus 76 ~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P----d~WpElv~~i~~~l~~~n~n~i~~am~v 151 (1005)
T KOG2274|consen 76 AFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP----DEWPELVPFILKLLSSGNENSIHGAMRV 151 (1005)
T ss_pred hccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc----hhhHHHHHHHHHHHhccchhhhhhHHHH
Confidence 11122222 23344445578889999999999999987643 2479999999999976433 3578888
Q ss_pred HHHHHhhchh
Q 000194 345 LGEMAGALDG 354 (1880)
Q Consensus 345 lg~la~~v~~ 354 (1880)
+..+...+-.
T Consensus 152 L~el~~ev~~ 161 (1005)
T KOG2274|consen 152 LAELSDEVDV 161 (1005)
T ss_pred HHHHHHHHHH
Confidence 8888766643
No 74
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0093 Score=74.20 Aligned_cols=253 Identities=17% Similarity=0.223 Sum_probs=157.7
Q ss_pred HHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHh---CCCCCCCcchhhHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHH
Q 000194 857 VAINSLMRILRDPSLASYHQKVVGSLMFIFKSM---GLGCVPYLPKVLPDLFHTVRTCD-DYLKDYITWKLGTLVSIVRQ 932 (1880)
Q Consensus 857 ~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~---~~~~~~~l~~iip~ll~~l~~~~-~~~~~~~~~~l~~lv~~~~~ 932 (1880)
.+-.+.++.|+|...-...-++++++..++..- ...+.||++.+.-.+...++... -+-|-.++..+++++..+++
T Consensus 526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344567788888755455556777777777653 34578898887777777665432 13578889999999999999
Q ss_pred hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh-hHHHH
Q 000194 933 HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT-YVLDI 1011 (1880)
Q Consensus 933 ~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~-~~~~i 1011 (1880)
+|+||+..|+..+-..|..... + +-++..++.++..++.++|..-.++.|-++|.+--.. |.. +++.. ....-
T Consensus 606 ~I~P~~~~ivq~lp~LWe~s~~-e---~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~-D~~-sP~hv~L~EDg 679 (978)
T KOG1993|consen 606 HIAPYASTIVQYLPLLWEESEE-E---PLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST-DPS-SPEHVYLLEDG 679 (978)
T ss_pred hhhHHHHHHHHHHHHHHhhhcc-C---cHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc-CCC-CCceeehhhhH
Confidence 9999999999999999986542 1 1244578999999999999887776666777664433 322 22211 11122
Q ss_pred H---HHHHHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHhhcccccccchhHhHHHHHHHhhCCCCHHHHHH
Q 000194 1012 L---HTLEVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKD 1087 (1880)
Q Consensus 1012 l---~~l~~~g~~~~~~~~~ilp~l~~~l~~~-~~~~vr~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~ 1087 (1880)
+ .++......+.+-+-.++|-+...++.+ ....+-...+.+..-+-..+=+..|...|...+.+.+++-..+--.+
T Consensus 680 meLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~a 759 (978)
T KOG1993|consen 680 MELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQA 759 (978)
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 2 2222222345555556778887777654 11222222333333333333345688899988888887544444555
Q ss_pred HHHHHHHHHHH---hcc-ccccchhHHHHHHH
Q 000194 1088 AVDALCCLAHA---LGE-DFTIFIPSIHKLLL 1115 (1880)
Q Consensus 1088 al~~L~~l~~~---~g~-~f~~fip~i~~~l~ 1115 (1880)
.+.+++.+++. +|. -|.+-+|.+...+.
T Consensus 760 vLkiveili~t~~il~~~~~~~~L~~lf~~I~ 791 (978)
T KOG1993|consen 760 VLKIVEILIKTNPILGSLLFSPLLSRLFLSIA 791 (978)
T ss_pred HHHHHHHHHhhhHHHHhhhcchhhHHHHHHHH
Confidence 66666666553 232 23445555555553
No 75
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.032 Score=69.19 Aligned_cols=373 Identities=15% Similarity=0.156 Sum_probs=188.1
Q ss_pred hcchhHHHHHHHHHhHhHhhhCh--hhHHHHHHHHHHHHHHHhhcC----CCC--cchHHHHHHHHHhhchhhhhhhhhH
Q 000194 291 EHRDRLVRLSITSLLPRIAHFLR--DRFVTNYLKICMNHILTVLRI----PAE--RDSGFIALGEMAGALDGELFHYLPT 362 (1880)
Q Consensus 291 ~~~~~~Vr~~~~~~i~~la~~~~--~~f~~~yl~~~~~~Ll~~L~~----~~~--r~~a~~alg~la~~v~~~~~p~l~~ 362 (1880)
-.++.++++...--+.-+=..++ .-+ .=|-.+....++ |++ |+..++-+..+ .+ ...+++
T Consensus 67 ps~~~elKKLly~ywE~vPKt~~dgkl~------~EMILvcna~RkDLQHPNEyiRG~TLRFLckL----kE--~ELlep 134 (948)
T KOG1058|consen 67 PSRNHELKKLLYYYWELVPKTDSDGKLL------HEMILVCNAYRKDLQHPNEYIRGSTLRFLCKL----KE--PELLEP 134 (948)
T ss_pred ccCchHHHHHHHHHHHHccccCCCcccH------HHHHHHHHHHhhhccCchHhhcchhhhhhhhc----Cc--HHHhhh
Confidence 35667777765433332222222 111 113344444443 443 77666655443 22 245688
Q ss_pred HHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHH-HHHHHHHH---------------HH
Q 000194 363 ITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTT-LVDALEQI---------------TV 426 (1880)
Q Consensus 363 i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~-l~~~l~~i---------------~~ 426 (1880)
+|+.|+++|...+.-++..|+-|+..|-+. ++.+.|..++++...+....++. .+.|+-.+ ..
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~id 213 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNID 213 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHh
Confidence 889999999776666666788888887776 56777888888777665443332 12232222 23
Q ss_pred hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcc-hhhHHH
Q 000194 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDL-LEFARD 505 (1880)
Q Consensus 427 ~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l-~~~v~~ 505 (1880)
.+|.+.+.++--+.+.|..+-. ..... ..|+ .
T Consensus 214 qi~~~~~~LqlViVE~Irkv~~----------------------------------------------~~p~~~~~~i-~ 246 (948)
T KOG1058|consen 214 QIPSFNDSLQLVIVELIRKVCL----------------------------------------------ANPAEKARYI-R 246 (948)
T ss_pred hccCccHHHHHHHHHHHHHHHh----------------------------------------------cCHHHhhHHH-H
Confidence 3333333333222222221100 00000 0122 2
Q ss_pred HHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
++..++...++.|+-.||.++..+.. ..+.+......++..+..++|-++..-++.-|
T Consensus 247 ~i~~lL~stssaV~fEaa~tlv~lS~----------------------~p~alk~Aa~~~i~l~~kesdnnvklIvldrl 304 (948)
T KOG1058|consen 247 CIYNLLSSTSSAVIFEAAGTLVTLSN----------------------DPTALKAAASTYIDLLVKESDNNVKLIVLDRL 304 (948)
T ss_pred HHHHHHhcCCchhhhhhcceEEEccC----------------------CHHHHHHHHHHHHHHHHhccCcchhhhhHHHH
Confidence 44555665666776666554433211 11223333334455556666666665555544
Q ss_pred cCCCCcc-hhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCC-cccccHHHHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 586 YGNRGFD-DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN-PAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 586 ~~~~~fd-~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~-p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
.+-..-+ ..+ .+++--++..++-++.+||..++.+.=.|+... -..+...|.+-+...-.. ++. ...+-|..-.
T Consensus 305 ~~l~~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d-~~~~yRqlLi 380 (948)
T KOG1058|consen 305 SELKALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESD-DNGKYRQLLI 380 (948)
T ss_pred HHHhhhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccc-cchHHHHHHH
Confidence 2100000 000 123333445678889999999999877776644 222333333322221111 111 1122243333
Q ss_pred HHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCc
Q 000194 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~ 743 (1880)
+.+. .+.-.+..+...+++.++..+.|. ++.....++.-+.+..+..+.. -..++..++..+..-.+
T Consensus 381 ktih----~cav~Fp~~aatvV~~ll~fisD~-----N~~aas~vl~FvrE~iek~p~L----r~~ii~~l~~~~~~irS 447 (948)
T KOG1058|consen 381 KTIH----ACAVKFPEVAATVVSLLLDFISDS-----NEAAASDVLMFVREAIEKFPNL----RASIIEKLLETFPQIRS 447 (948)
T ss_pred HHHH----HHhhcChHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhCchH----HHHHHHHHHHhhhhhcc
Confidence 4443 344445567889999999999985 4444555555555555443321 12334444444433334
Q ss_pred hhhHHHHHHHHHHHHhhcC
Q 000194 744 VTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~ 762 (1880)
......|+|.+|..|+..+
T Consensus 448 ~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 448 SKICRGALWILGEYCEGLS 466 (948)
T ss_pred cccchhHHHHHHHHHhhhH
Confidence 4566789999998776543
No 76
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.70 E-value=0.0044 Score=73.46 Aligned_cols=201 Identities=15% Similarity=0.124 Sum_probs=139.5
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHh-hcc-cc
Q 000194 24 DALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDEL-IDV-AL 101 (1880)
Q Consensus 24 ~~~~~l~~~l~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~L-i~~-~~ 101 (1880)
+.+...+.+|..++...|.++ |..++.........+++......|...+...++.....++.-|..++.-| +.+ .+
T Consensus 43 ~~L~~~Id~l~eK~~~~Re~a--L~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 43 DKLKEAIDLLTEKSSSTREAA--LEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 346677888876654333333 77777777788888888888888999888888876667777777666666 332 11
Q ss_pred CcchhHHHHHHHHHHhhcccCC-ChHHHHHHHHHHHHHhhhCCCCchhHHH--HHHHHHH--hhhcCCC---------cc
Q 000194 102 GENASKVSKFSNYMRTVFEVKR-DREILVLASKVLGHLARAGGAMTADEVE--FQVKMAL--DWLRGDR---------VE 167 (1880)
Q Consensus 102 ~~~~~~~~~~~~~L~~~l~~~~-d~~v~~~aa~~l~~L~~~~g~~~~~~v~--~~~~~~~--~~l~~~~---------~~ 167 (1880)
.+.......+.+.|..++.... ...++..++.|||-++..++.-..+... ..++.++ .+++.++ +.
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 2345566778888888886322 3456667777998877765543322211 2333221 1222222 24
Q ss_pred hhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q 000194 168 YRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1880)
...-||+..|+-|+..+|. .+..++...+|.+...|..++..||-||.+++.-+.+...
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999887 4667788899999999999999999999999998877654
No 77
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.34 Score=60.43 Aligned_cols=347 Identities=16% Similarity=0.234 Sum_probs=174.8
Q ss_pred hhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 000194 274 FMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAG 350 (1880)
Q Consensus 274 ~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~ 350 (1880)
|+.|.+. ++...|+.++++..+.||+.++.++-.+.---|+ .+.+++|-|..-|..++ ..++|...+.++|.
T Consensus 136 fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 136 IVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR 210 (877)
T ss_pred ccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 4555444 5777888999999999999888777655422222 46778888888888765 45789999999998
Q ss_pred hchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 000194 351 ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITVSIP 429 (1880)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~-~ll~~l~~~~ls~~l~~~l~~i~~~~p 429 (1880)
.-++...++-|.+...+...-.++ .-...+..||.|+- +.|-+. .+++++.+- .+...+
T Consensus 211 KnPknyL~LAP~ffkllttSsNNW---mLIKiiKLF~aLtp-----lEPRLgKKLieplt~l------i~sT~A------ 270 (877)
T KOG1059|consen 211 KNPQNYLQLAPLFYKLLVTSSNNW---VLIKLLKLFAALTP-----LEPRLGKKLIEPITEL------MESTVA------ 270 (877)
T ss_pred hCCcccccccHHHHHHHhccCCCe---ehHHHHHHHhhccc-----cCchhhhhhhhHHHHH------HHhhHH------
Confidence 888765555555554443211111 11234444444322 223222 233333210 111110
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhh
Q 000194 430 SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVL 509 (1880)
Q Consensus 430 ~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~ 509 (1880)
..-+.+.|-.|+++ .+..++ .+..+.+.+|.+-|+.|
T Consensus 271 ------mSLlYECvNTVVa~-s~s~g~-------------------~d~~asiqLCvqKLr~f----------------- 307 (877)
T KOG1059|consen 271 ------MSLLYECVNTVVAV-SMSSGM-------------------SDHSASIQLCVQKLRIF----------------- 307 (877)
T ss_pred ------HHHHHHHHHHheee-hhccCC-------------------CCcHHHHHHHHHHHhhh-----------------
Confidence 01122333333333 111000 01233556666655544
Q ss_pred hccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCC
Q 000194 510 YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNR 589 (1880)
Q Consensus 510 ~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~ 589 (1880)
+++.++..+--+..++.+++...+. +.+.-.+ ++-.++.|.|+.||..++.-+.+--
T Consensus 308 -iedsDqNLKYlgLlam~KI~ktHp~------------------~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 308 -IEDSDQNLKYLGLLAMSKILKTHPK------------------AVQAHKD----LILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred -hhcCCccHHHHHHHHHHHHhhhCHH------------------HHHHhHH----HHHHHhccCCchhHHHHHHHHHHHh
Confidence 5556677776667777776643321 1122222 3334678999999999988773100
Q ss_pred CcchhhccHhhHHHHHHHhCCCCH-hHHH-HHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHH
Q 000194 590 GFDDFLAQADCLSAIFAALNDEDF-DVRE-YAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667 (1880)
Q Consensus 590 ~fd~~L~~~~~l~~L~~~l~D~~~-~VR~-~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1880)
.=+ .-.++++.|+..+.+.+. ..|. ....+++-.+..+-.+|..+ . ..+..+.+|..- +..+.-..-+.-+-
T Consensus 365 skk---Nl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdF-E-WYlsVlveLa~l-~~~~~G~~I~eQi~ 438 (877)
T KOG1059|consen 365 SKK---NLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDF-E-WYLSVLVELARL-EGTRHGSLIAEQII 438 (877)
T ss_pred hhh---hHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhH-H-HHHHHHHHHHhc-cccchhhHHHHHHH
Confidence 000 013567777665544433 4443 34445555555554444321 1 122233333222 11111112222333
Q ss_pred HHHHhCcccccCchHHHHHHHHH--HhccCCCC-CCChhHHHHHHHHHHHHHHh
Q 000194 668 CLIRNCERLIRPYIAPIHKALVA--RLLEGTGI-NANNGIISGVLVTVGDLARV 718 (1880)
Q Consensus 668 ~l~~~~~~~~~py~~~il~~ll~--~l~~~~~~-~~~~~v~~~~~~~l~~La~~ 718 (1880)
+++-.. +.++||.-..+..++. .+...... .....|..+++.++|+.+..
T Consensus 439 Dv~iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ 491 (877)
T KOG1059|consen 439 DVAIRV-PSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEF 491 (877)
T ss_pred HHheec-hhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHH
Confidence 333332 3567776666665554 11111100 12455677777888877764
No 78
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.19 Score=62.29 Aligned_cols=362 Identities=16% Similarity=0.169 Sum_probs=194.3
Q ss_pred HHHHHHHHHcCCC--C-chhhHHHHHHHHHHHHH--hhhChHHHHHHHHHHH-----------HH--HHhhhcCCChhhh
Q 000194 25 ALNRILADLCTHG--N-PKEGASLALRKHIEEQA--RDLGGEAFSRFMDQLY-----------DR--ISGLLESNDAAEN 86 (1880)
Q Consensus 25 ~~~~l~~~l~s~~--~-~~~~aa~~l~~~v~~~~--~~~~~~~~~~~~~~l~-----------~~--i~~l~~s~~~~~r 86 (1880)
-+.-++.++++.. + ++.+.-.||..+=.-.= +-+++-+=.+|.-.+. .. -.+|++|+...+|
T Consensus 12 GL~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEK 91 (938)
T KOG1077|consen 12 GLAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEK 91 (938)
T ss_pred hHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHH
Confidence 3667788887654 2 32346666666542221 1234433445543321 11 1267888999999
Q ss_pred hhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-CCC
Q 000194 87 LGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDR 165 (1880)
Q Consensus 87 ~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~~~ 165 (1880)
.-|-+.+..|+.-. ...++-..+-+++=+. +.|+.-+-.|-.++|.+ ||-...+-+...++.+ |. ++.
T Consensus 92 qIGYl~is~L~n~n----~dl~klvin~iknDL~-srn~~fv~LAL~~I~ni---G~re~~ea~~~DI~Kl---LvS~~~ 160 (938)
T KOG1077|consen 92 QIGYLFISLLLNEN----SDLMKLVINSIKNDLS-SRNPTFVCLALHCIANI---GSREMAEAFADDIPKL---LVSGSS 160 (938)
T ss_pred HHhHHHHHHHHhcc----hHHHHHHHHHHHhhhh-cCCcHHHHHHHHHHHhh---ccHhHHHHhhhhhHHH---HhCCcc
Confidence 99999999998553 2223333455666664 45677777777777653 3333333333344433 33 334
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh-------------
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW------------- 232 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~------------- 232 (1880)
..-.|..|.++|-.|-...|+.+.+ ....+.|+..|.|.+..|--||..-+..+.. +.+..
T Consensus 161 ~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk----~~p~~yk~~~~~avs~L~ 234 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVK----KNPESYKTCLPLAVSRLS 234 (938)
T ss_pred hHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHH----cCCHHHhhhHHHHHHHHH
Confidence 4455665556666677778887654 3556667778888887776655543333221 21111
Q ss_pred ------------------HHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh---------------------
Q 000194 233 ------------------RVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE--------------------- 273 (1880)
Q Consensus 233 ------------------~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~--------------------- 273 (1880)
-..|+..=+-.+++.+..+.|.-++..-..+++.++....+
T Consensus 235 riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI 314 (938)
T KOG1077|consen 235 RIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAI 314 (938)
T ss_pred HHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHH
Confidence 11233221112222222221222233333344444432210
Q ss_pred -------hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC---cchHHH
Q 000194 274 -------FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE---RDSGFI 343 (1880)
Q Consensus 274 -------~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~---r~~a~~ 343 (1880)
--.+-+..-|..+..++.+++..+|..+++.+-.+|... |....+..-...++..|+.+++ |..|++
T Consensus 315 ~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~---~s~davK~h~d~Ii~sLkterDvSirrravD 391 (938)
T KOG1077|consen 315 SLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE---FSIDAVKKHQDTIINSLKTERDVSIRRRAVD 391 (938)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc---chHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 001123334555666677888888888887777777542 2221222223444455554433 556666
Q ss_pred HHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q 000194 344 ALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG 412 (1880)
Q Consensus 344 alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ 412 (1880)
.|=.++..- -...|+..+.++|.......+++...=++.|++.+..+..=|+..+++.+--.|
T Consensus 392 LLY~mcD~~------Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 392 LLYAMCDVS------NAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred HHHHHhchh------hHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 555544221 234566666677755544445566666777888888888888888888766554
No 79
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.0014 Score=73.06 Aligned_cols=353 Identities=12% Similarity=0.096 Sum_probs=187.2
Q ss_pred HHHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHhhhcCCCh-hhhhhHHHHHhHhhcccc
Q 000194 25 ALNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMD-QLYDRISGLLESNDA-AENLGALRAIDELIDVAL 101 (1880)
Q Consensus 25 ~~~~l~~~l~s~~~~-~~~aa~~l~~~v~~~~~~~~~~~~~~~~~-~l~~~i~~l~~s~~~-~~r~~~i~ai~~Li~~~~ 101 (1880)
.+.++.++|.|..-+ .-.|..+.+.++ .+|-++- ....++ -.+.++.+++.+... --+.-|.-|+..+.++..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~L---S~E~~PP-Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLL---SKETSPP-IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHh---ccccCCC-chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 467888888886422 224655555554 5555543 222221 134556666643222 134456666666654432
Q ss_pred CcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH--HHHHHHhhhcCCCc-chhHHHHHH
Q 000194 102 GENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF--QVKMALDWLRGDRV-EYRRFAAVL 175 (1880)
Q Consensus 102 ~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~--~~~~~~~~l~~~~~-~~~R~aA~~ 175 (1880)
. .+++ ....+.+-+++. +.+.+|++.|.|+||.+|..+.. --|+|-. .++.++..+.+.+. -.--.-|..
T Consensus 148 ~--QTkvVvd~~AVPlfiqlL~-s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TW 223 (526)
T COG5064 148 Q--QTKVVVDAGAVPLFIQLLS-STEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATW 223 (526)
T ss_pred c--ceEEEEeCCchHHHHHHHc-CchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHH
Confidence 1 1111 011223333442 55789999999999999864221 1222221 34555666554333 122234567
Q ss_pred HHHHHHhh-cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH--HHHHHHHHhhccCCC
Q 000194 176 ILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNA 252 (1880)
Q Consensus 176 ~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~~l~~~~~~l~~~~ 252 (1880)
.|+-|+.+ -|.---..+.+.+|.+.+.+...+++|-..|+.|+.-+.+. +....+.+ ..+-..+...|..++
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-----~~E~i~avld~g~~~RLvElLs~~s 298 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-----PNEKIQAVLDVGIPGRLVELLSHES 298 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-----cHHHHHHHHhcCCcHHHHHHhcCcc
Confidence 88888877 33333456778888888888888888888999998865432 11111111 011122333333332
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHH
Q 000194 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILT 330 (1880)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~ 330 (1880)
..++.-++..+|.++.+...--.--+. ..+..+...++++...+|+.+|++|..+.+-..++. ...+ ..+.|.|..
T Consensus 299 -a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqi-qavid~nliPpLi~ 376 (526)
T COG5064 299 -AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQI-QAVIDANLIPPLIH 376 (526)
T ss_pred -ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHH-HHHHhcccchHHHH
Confidence 334455555666555433210000000 012233344577778999999999999877665543 2122 356666666
Q ss_pred hhcCC--CCcchHHHHHHHHHhhc-hh-hhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 331 VLRIP--AERDSGFIALGEMAGAL-DG-ELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 331 ~L~~~--~~r~~a~~alg~la~~v-~~-~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.|... +.|..|+-|+.+..... +. ++..|+ ...+..+...|.-...+..+-++.|+..+.+.
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 66543 34567888887753221 11 334444 23455555555333333444567888777653
No 80
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.31 Score=58.80 Aligned_cols=243 Identities=15% Similarity=0.183 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhh
Q 000194 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHY 359 (1880)
Q Consensus 280 ~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~ 359 (1880)
+..+..+-.++.+.....|-+++.++.++|--.|+... .+=+.+ ..|-+...|..+.-||..+... |. ..-
T Consensus 302 ~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-----vcN~ev-EsLIsd~Nr~IstyAITtLLKT-Gt--~e~ 372 (898)
T COG5240 302 DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-----VCNKEV-ESLISDENRTISTYAITTLLKT-GT--EET 372 (898)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-----ecChhH-HHHhhcccccchHHHHHHHHHc-Cc--hhh
Confidence 33444444455566666677777777777654443210 001111 1111334566677777665432 22 123
Q ss_pred hhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHhCCCChHHHH
Q 000194 360 LPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSA-G--LSTTLVDALEQITVSIPSLLPTIQ 436 (1880)
Q Consensus 360 l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~-~--ls~~l~~~l~~i~~~~p~l~~~i~ 436 (1880)
++.+|..|-....+-..+-..-+++++..++-.+......|+.-+...|.+- | ...++.+++.++.+..|..+
T Consensus 373 idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~sk---- 448 (898)
T COG5240 373 IDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSK---- 448 (898)
T ss_pred HHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHH----
Confidence 4444444444443333333345677777777777766555666555555554 3 35567778888777777543
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCC---CcchhhHHHHHhhhccC
Q 000194 437 DRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG---HDLLEFARDSVVLYLDD 513 (1880)
Q Consensus 437 ~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~---~~l~~~v~~~~~~~l~~ 513 (1880)
++.|+.++.-+....| -..+++.|+-+.-+| ..-.-|++.+....+-
T Consensus 449 EraLe~LC~fIEDcey-----------------------------~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL- 498 (898)
T COG5240 449 ERALEVLCTFIEDCEY-----------------------------HQITVRILGILGREGPRAKTPGKYVRHIYNRLIL- 498 (898)
T ss_pred HHHHHHHHHHHhhcch-----------------------------hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH-
Confidence 4444444422111111 123444444332111 1222467766554432
Q ss_pred CChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 514 ~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
++.-||.+|+.++.++..+.-. ..+.+-+..++..+..|.|.+||-.+--++
T Consensus 499 EN~ivRsaAv~aLskf~ln~~d--------------------~~~~~sv~~~lkRclnD~DdeVRdrAsf~l 550 (898)
T COG5240 499 ENNIVRSAAVQALSKFALNISD--------------------VVSPQSVENALKRCLNDQDDEVRDRASFLL 550 (898)
T ss_pred hhhHHHHHHHHHHHHhccCccc--------------------cccHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 2677999888888776533211 123344455666777888888887765444
No 81
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.62 E-value=4.2e-05 Score=65.14 Aligned_cols=54 Identities=28% Similarity=0.255 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 000194 167 EYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1880)
Q Consensus 167 ~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~ 220 (1880)
|..|.+|+.+|+.+++..+..+.++++++++.+...|.|+++.||.+|+.||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 357999999999999999999999999999999999999999999999999975
No 82
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.58 E-value=0.35 Score=64.75 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=54.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcC
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMG 1441 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~ 1441 (1880)
.-+-+.|+|++|+..|++.+...+++ .....+-.|+.++|+|+.....+...... +++.. ......+.+...+|
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-~p~~~-~a~~~~a~a~~~lg 208 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALEL-DPDYS-KALNRRANAYDGLG 208 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc-CCCCH-HHHHHHHHHHHHcC
Confidence 34778899999999999988754442 34567788999999998777766553321 22211 12223467888899
Q ss_pred ChhhHHH
Q 000194 1442 EWDQMAE 1448 (1880)
Q Consensus 1442 ~Wd~~~~ 1448 (1880)
+|+.-..
T Consensus 209 ~~~eA~~ 215 (615)
T TIGR00990 209 KYADALL 215 (615)
T ss_pred CHHHHHH
Confidence 9987544
No 83
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.55 E-value=0.56 Score=62.72 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.....|+.++.+....|+++.|...+.++...+|. .+.+.+..+.+.+..|+ ..+|+..+++.+...
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE----------DPDIYYHRAQLHFIKGE---FAQAGKDYQKSIDLD 429 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC
Confidence 45789999999999999999999999998877542 47788889999999995 678999998866421
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. ....+..+|.-.... ...++.+..|..+++..|+...+|..+|......
T Consensus 430 P~----------------------~~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~- 480 (615)
T TIGR00990 430 PD----------------------FIFSHIQLGVTQYKE------GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ- 480 (615)
T ss_pred cc----------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-
Confidence 10 011233333333322 3467889999999999999999998888764431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~ 1757 (1880)
.-...|++.|-+++.+.+
T Consensus 481 -------------g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 481 -------------NKFDEAIEKFDTAIELEK 498 (615)
T ss_pred -------------cCHHHHHHHHHHHHhcCC
Confidence 123579999999998853
No 84
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0013 Score=74.03 Aligned_cols=407 Identities=19% Similarity=0.175 Sum_probs=205.8
Q ss_pred HHHHHHHHHhhhcCCccccc--HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhc
Q 000194 616 REYAISVAGRLSEKNPAYVL--PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1880)
Q Consensus 616 R~~a~~~l~~l~~~~p~~v~--p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1880)
|+++...++++-..+.-.+. ..+| .++.+.+++....+|+ |+-.+..+.++.-. ..-....+.++-.+.
T Consensus 25 rEav~~ll~~lEd~~~i~fyS~~plr-----altvL~ySDnlnlqrs-aalafAeitek~vr---~Vsres~epvl~llq 95 (550)
T KOG4224|consen 25 REAVADLLNRLEDRNAISFYSASPLR-----ALTVLKYSDNLNLQRS-AALAFAEITEKGVR---RVSRESNEPVLALLQ 95 (550)
T ss_pred HHHHHHHHHhhcccccccccCCCccc-----hheeeeeccccccchH-HHHHHHHHHHHHHH---HhhhhhhhHHHHHHh
Confidence 55666677776665432222 1133 2445566633334443 34455555543211 111122223333344
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHhcCC-chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcch
Q 000194 694 EGTGINANNGIISGVLVTVGDLARVGGF-GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYP 772 (1880)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~-~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p 772 (1880)
.. ++.+..++..++|.++..++. .+.--+..+=+.+.+++.|. .+++.+|++++..++.........- . .
T Consensus 96 s~-----d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~--vevqcnaVgCitnLaT~d~nk~kiA-~-s 166 (550)
T KOG4224|consen 96 SC-----DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG--VEVQCNAVGCITNLATFDSNKVKIA-R-S 166 (550)
T ss_pred Cc-----chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC--cEEEeeehhhhhhhhccccchhhhh-h-c
Confidence 32 566777778888988876654 33444556677888888875 4788899999998887644332111 0 1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcc
Q 000194 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1880)
Q Consensus 773 ~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1880)
.-+..+.+ |.+.++..+++.+.-++-.+. -.. ++ .. . +.
T Consensus 167 GaL~pltr-LakskdirvqrnatgaLlnmT---hs~--En------Rr----~-----------------LV-------- 205 (550)
T KOG4224|consen 167 GALEPLTR-LAKSKDIRVQRNATGALLNMT---HSR--EN------RR----V-----------------LV-------- 205 (550)
T ss_pred cchhhhHh-hcccchhhHHHHHHHHHHHhh---hhh--hh------hh----h-----------------hh--------
Confidence 22344444 333445667776543332221 100 00 00 0 00
Q ss_pred cchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHh--CCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 000194 853 YYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM--GLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV 930 (1880)
Q Consensus 853 ~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~--~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~ 930 (1880)
..-.++.|+..++...+. .+..++.|+..|.-.- .....+-=|+++|.+++.+++.++..+..+..+|+.+..-.
T Consensus 206 --~aG~lpvLVsll~s~d~d-vqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 206 --HAGGLPVLVSLLKSGDLD-VQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred --ccCCchhhhhhhccCChh-HHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 000112233334332222 2234555665554321 11234445689999999999988887776665666554321
Q ss_pred HHhHHHh-----HHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCch
Q 000194 931 RQHIRKY-----LQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDY 1005 (1880)
Q Consensus 931 ~~~i~~y-----~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~ 1005 (1880)
.+.++. +|-++.++ +.+..| +...-+.||..++..=..+.---=.-++.++.+.|.-.| ..
T Consensus 283 -~Yq~eiv~ag~lP~lv~Ll----qs~~~p------lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d---nE 348 (550)
T KOG4224|consen 283 -EYQREIVEAGSLPLLVELL----QSPMGP------LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD---NE 348 (550)
T ss_pred -hhhhHHHhcCCchHHHHHH----hCcchh------HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC---ch
Confidence 122221 23333333 222211 111223344333322221111111123445566664322 12
Q ss_pred hhHHHHHHHHHHHhcchhhhhhh-----hHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccchh--HhHHHHHHHhhC
Q 000194 1006 TYVLDILHTLEVFGGTLDEHMHL-----LLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLD 1078 (1880)
Q Consensus 1006 ~~~~~il~~l~~~g~~~~~~~~~-----ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~ 1078 (1880)
+..+.+.+++-.+..+-+.-... -+|-+..++.. .|.+++...-.++..++..-+.+.++ +.|++.|+....
T Consensus 349 eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~ 427 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTG 427 (550)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccC
Confidence 24444555554443322222222 24555444433 47888888888898888775555533 367788888888
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q 000194 1079 GKNDELRKDAVDALCCLAHAL 1099 (1880)
Q Consensus 1079 ~~~~~l~~~al~~L~~l~~~~ 1099 (1880)
+.+.+++..+-.+|..+....
T Consensus 428 s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 428 SESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred ccchhhcccHHHHHHhhhhhh
Confidence 888999999999998887553
No 85
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.043 Score=69.65 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=109.7
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Q 000194 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1880)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1880)
.++..+-..|.+.+...+.++.....-+..+..+-.+++..+..-.+.++..++.+-..=-. ..++.+..++...+
T Consensus 458 ~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S----~~n~ql~~Tss~~i 533 (982)
T KOG2022|consen 458 GLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLS----APNPQLLSTSSDLI 533 (982)
T ss_pred HHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccc----cCChhHHHHHHHHH
Confidence 44455555566666555434223344455667788889888877777766666554332111 13677888889999
Q ss_pred HHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCC-CCHHHH
Q 000194 713 GDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTR 791 (1880)
Q Consensus 713 ~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~-~~~~vr 791 (1880)
|.++...++. .-|+...+|++++.+..+ +.-..|+.+|.++|+.+...+.||.+ .++..+-..+... .....|
T Consensus 534 gs~s~~l~e~-P~~ln~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d--~~~a~~~e~l~~~~~~~S~~ 607 (982)
T KOG2022|consen 534 GSLSNWLGEH-PMYLNPSLPLLFQGLHNS---KESEQAISTLKTLCETCPESLDPYAD--QFSAVCYEVLNKSNAKDSDR 607 (982)
T ss_pred HHHHHHHhcC-CcccCchHHHHHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH--HHHHHHHHHhcccccCchHH
Confidence 9998876653 236677788888888633 34567888899999999999999986 6888888777432 255788
Q ss_pred HHHHHHHHHH
Q 000194 792 REVLKVLGIM 801 (1880)
Q Consensus 792 ~~~l~~lg~l 801 (1880)
...++.+|.+
T Consensus 608 ~klm~sIGyv 617 (982)
T KOG2022|consen 608 LKLMKSIGYV 617 (982)
T ss_pred HHHHHHHHHH
Confidence 8888988875
No 86
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.46 E-value=0.011 Score=77.04 Aligned_cols=293 Identities=15% Similarity=0.106 Sum_probs=170.1
Q ss_pred HHhhhcC-CChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCC----Cchh
Q 000194 74 ISGLLES-NDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGA----MTAD 148 (1880)
Q Consensus 74 i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~----~~~~ 148 (1880)
+...+++ ...+.|.+|+..+..|-..- ....++.|..+|+..++. +.+.+|+..|.+++-++...-.. ..--
T Consensus 427 lts~IR~lk~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 427 LTSCIRALKTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 3344444 45667888888887775442 345678899999999996 67889999999999988664221 1222
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA-IWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~-i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
|++.+++.+-..+.+......|.|=.-.|..||..+-..+. .-... ....+.||+..- +.+.
T Consensus 504 F~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle----~~q~~~~~g~~n~~nset---~~~~---------- 566 (1431)
T KOG1240|consen 504 FPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLE----LTQELRQAGMLNDPNSET---APEQ---------- 566 (1431)
T ss_pred hHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHH----HHHHHHhcccccCccccc---cccc----------
Confidence 66667776666555546667888877778888876544321 11111 112245665530 1100
Q ss_pred hchhhHHHHHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHHHHHHhhcchhHHHHHHHHHh
Q 000194 228 RETRWRVQWYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 228 r~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
.........+ ...++.... +.++ +.-++.+=+..+..|.. =|...+-.+ ++.-++.++++++...|.+-.+.|
T Consensus 567 ~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~---FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI 641 (1431)
T KOG1240|consen 567 NYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCV---FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSI 641 (1431)
T ss_pred ccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHH---HhhhcccccchHHHHHHHhcCccHHHHHHHHhhc
Confidence 0001111112 222222222 3444 24556664444444432 122222222 445567788999999999999999
Q ss_pred HhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC--cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHH
Q 000194 306 PRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEAL 383 (1880)
Q Consensus 306 ~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~--r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~ 383 (1880)
+-++.+-+..-++.| ++|+|...|.+.++ -..|+.|+.-+.+. |---++++-+|++.+...|-.++.=.+..++
T Consensus 642 ~gvsi~VG~rs~sey---llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 642 VGVSIFVGWRSVSEY---LLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred cceEEEEeeeeHHHH---HHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHH
Confidence 999888776645555 67888888876554 24566666665432 2111366666666666555433222234677
Q ss_pred HHHHHHHHHhCC
Q 000194 384 ACVGNIARAMGP 395 (1880)
Q Consensus 384 ~~l~~la~~~g~ 395 (1880)
..+..+++.++.
T Consensus 718 ~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 718 GIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHHhhhhh
Confidence 777777776664
No 87
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.087 Score=64.73 Aligned_cols=270 Identities=16% Similarity=0.076 Sum_probs=155.6
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH--hhhchh
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI--EKRETR 231 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i--~~r~~~ 231 (1880)
+-+.+-++-.+.+.+.|-+|+..+-+|.++. .+ -..........|+|.+..||.+|..++......- ......
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL---~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGF--KL---SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhcccc--cc---cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 3333444546667777888888888887741 11 1123345568899999999999998776544322 101112
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHH--------------------------
Q 000194 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAE-------------------------- 284 (1880)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~-------------------------- 284 (1880)
.....+...|..+++++.+- ++.+|--|..+||.+-..+.+++.+.+++ ++.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 34456777788888888776 37788888888888766666666655553 332
Q ss_pred ------------------------HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCc
Q 000194 285 ------------------------IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AER 338 (1880)
Q Consensus 285 ------------------------~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~r 338 (1880)
.++..+++.=-.||++++..+..||...|. | -...+.+|...+.++ ..|
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-F----A~~aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-F----AVRALDFLVDMFNDEIEVVR 427 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-c----HHHHHHHHHHHhccHHHHHH
Confidence 111122233357999999999999987775 4 356778888888764 358
Q ss_pred chHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCC---chHHHHHHHHHHHhcC-CC
Q 000194 339 DSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPV---MEPHVRGLLDIMFSAG-LS 414 (1880)
Q Consensus 339 ~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~---~~~~l~~ll~~l~~~~-ls 414 (1880)
..|..+|..|+....- -..+++.|. ++|.+...+.++.+-+.++. ++ -++ +..-+..++..|-..+ ..
T Consensus 428 L~ai~aL~~Is~~l~i-~eeql~~il----~~L~D~s~dvRe~l~elL~~-~~--~~d~~~i~m~v~~lL~~L~kyPqDr 499 (823)
T KOG2259|consen 428 LKAIFALTMISVHLAI-REEQLRQIL----ESLEDRSVDVREALRELLKN-AR--VSDLECIDMCVAHLLKNLGKYPQDR 499 (823)
T ss_pred HHHHHHHHHHHHHhee-cHHHHHHHH----HHHHhcCHHHHHHHHHHHHh-cC--CCcHHHHHHHHHHHHHHhhhCCCCc
Confidence 8999999988866321 123444443 33333322222222211111 00 000 0111122222222222 34
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 000194 415 TTLVDALEQITVSIPSLLPTIQDRLLDC 442 (1880)
Q Consensus 415 ~~l~~~l~~i~~~~p~l~~~i~~~ll~~ 442 (1880)
++...|+..|..+-+.+.-.+..++++.
T Consensus 500 d~i~~cm~~iGqnH~~lv~s~m~rfl~k 527 (823)
T KOG2259|consen 500 DEILRCMGRIGQNHRRLVLSNMGRFLEK 527 (823)
T ss_pred HHHHHHHHHHhccChhhHHHHHHHHHHh
Confidence 5556677777776666666666666544
No 88
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.013 Score=66.37 Aligned_cols=398 Identities=14% Similarity=0.117 Sum_probs=202.9
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc-ccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
.+.+..+++..+..++.++...+|.++-.+... +...+.. +..++.++..+ ....+-.+..++-.++.....-.+-
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~G-l~~Li~qmmtd--~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLG-LDLLILQMMTD--GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccC-hHHHHHHhcCC--CcEEEeeehhhhhhhhccccchhhh
Confidence 444555667777889999999999888765432 1111111 11223333332 3455566777777777542211111
Q ss_pred chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
--..-+..+.. +... .+..++.++..++-.|...-. -...+ ..-+|.++..+... +..++.-+..+++.+
T Consensus 164 A~sGaL~pltr-Laks----kdirvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVsll~s~-d~dvqyycttaisnI 235 (550)
T KOG4224|consen 164 ARSGALEPLTR-LAKS----KDIRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNI 235 (550)
T ss_pred hhccchhhhHh-hccc----chhhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhh
Confidence 11112233333 2221 255666666666655542211 01111 12367888887754 567887777777766
Q ss_pred HhhcCcc-cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCC
Q 000194 758 VQSTGYV-ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836 (1880)
Q Consensus 758 ~~~~~~~-i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1880)
+...... +-. ..-|.+++.|..++.+. +++++-.|--+++.+.+-..|....+ +
T Consensus 236 aVd~~~Rk~La-qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv---------------~-------- 290 (550)
T KOG4224|consen 236 AVDRRARKILA-QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIV---------------E-------- 290 (550)
T ss_pred hhhHHHHHHHH-hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHH---------------h--------
Confidence 5332111 111 12378999999998755 67888877777777764333321100 0
Q ss_pred cccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcc-hhhHHHHHHHhcCCc-c
Q 000194 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLP-KVLPDLFHTVRTCDD-Y 914 (1880)
Q Consensus 837 ~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~-~iip~ll~~l~~~~~-~ 914 (1880)
.-.++.|++.|+++...-.- +-+.++.+|.-+.+.. ++..+ .++..++..++..+. .
T Consensus 291 -------------------ag~lP~lv~Llqs~~~plil-asVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEe 349 (550)
T KOG4224|consen 291 -------------------AGSLPLLVELLQSPMGPLIL-ASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEE 349 (550)
T ss_pred -------------------cCCchHHHHHHhCcchhHHH-HHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchh
Confidence 01235677888888653221 2233333333222222 22222 234444444443321 1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhc-cchhhHHHHH
Q 000194 915 LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRT-HLPVILPCCI 993 (1880)
Q Consensus 915 ~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~-yl~~l~p~ll 993 (1880)
.+.. ..+++..++.+.+...+. +=.--+|.+.
T Consensus 350 iqch-----------------------------------------------AvstLrnLAasse~n~~~i~esgAi~kl~ 382 (550)
T KOG4224|consen 350 IQCH-----------------------------------------------AVSTLRNLAASSEHNVSVIRESGAIPKLI 382 (550)
T ss_pred hhhh-----------------------------------------------HHHHHHHHhhhhhhhhHHHhhcCchHHHH
Confidence 2222 233333333322222111 1122345555
Q ss_pred HhcccccccCchhhHHHHHHHHHH--Hhcchhhhhh--hhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc-cc-----
Q 000194 994 QVLSDAERCNDYTYVLDILHTLEV--FGGTLDEHMH--LLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ-VT----- 1063 (1880)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~~--~g~~~~~~~~--~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~-~~----- 1063 (1880)
..+-|.. -.+...+-.|+.. +.++...++- -++|.++.+.... +.++|..|..+++.++..++ ..
T Consensus 383 eL~lD~p----vsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~v~~YarviEa 457 (550)
T KOG4224|consen 383 ELLLDGP----VSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSDVEHYARVIEA 457 (550)
T ss_pred HHHhcCC----hhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhhhHHHHHHHHH
Confidence 5554421 1222333344443 2333333332 3677777776553 78999999999999877532 11
Q ss_pred -c-hhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccch
Q 000194 1064 -G-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFI 1107 (1880)
Q Consensus 1064 -~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fi 1107 (1880)
+ -...|-..|.|++.+.+...+--+..++-.|+.........|+
T Consensus 458 wd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~~~~~~i 503 (550)
T KOG4224|consen 458 WDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDLPLTAFI 503 (550)
T ss_pred hcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCccHHHHH
Confidence 1 1234455688888877777788888888888776554444443
No 89
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.05 Score=66.72 Aligned_cols=266 Identities=19% Similarity=0.185 Sum_probs=164.1
Q ss_pred HHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc------
Q 000194 115 MRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF------ 188 (1880)
Q Consensus 115 L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l------ 188 (1880)
|-.+. .+.|..|+..|.+++=.|.+ |... -....+++.+.+. +..+..|.||+.++...+..+|--.
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~e--g~kL---~~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSE--GFKL---SKACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcc--cccc---cHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 44444 37799999999998877665 2222 2334666777664 5566789999999988888875321
Q ss_pred hhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH-------------HH-----------
Q 000194 189 NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFE-------------AT----------- 244 (1880)
Q Consensus 189 ~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~-------------~~----------- 244 (1880)
.......|..|..+++|-+-.||.-|+++|+.+-.+-.+- .....-+++.. .+
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~---i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI---IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH---HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 2467788999999999999999999999999765532210 00011111111 00
Q ss_pred --------------------------HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHH
Q 000194 245 --------------------------QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVR 298 (1880)
Q Consensus 245 --------------------------~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr 298 (1880)
..||.+. -.|+|.+|...+..|..+.+.|-.. -+..++.++++.-..||
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~~----aldfLvDMfNDE~~~VR 427 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAVR----ALDFLVDMFNDEIEVVR 427 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHHH----HHHHHHHHhccHHHHHH
Confidence 1111111 1378888888888887765554333 45566777788899999
Q ss_pred HHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCC
Q 000194 299 LSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRG 376 (1880)
Q Consensus 299 ~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~ 376 (1880)
..++.++..++.... .- .+-|+.++..|... +.|...-..|+. +.... ..-++-.+..+...|... +
T Consensus 428 L~ai~aL~~Is~~l~--i~----eeql~~il~~L~D~s~dvRe~l~elL~~-~~~~d---~~~i~m~v~~lL~~L~ky-P 496 (823)
T KOG2259|consen 428 LKAIFALTMISVHLA--IR----EEQLRQILESLEDRSVDVREALRELLKN-ARVSD---LECIDMCVAHLLKNLGKY-P 496 (823)
T ss_pred HHHHHHHHHHHHHhe--ec----HHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCCc---HHHHHHHHHHHHHHhhhC-C
Confidence 999999988886532 11 33455566666543 235444444433 11111 122334445555555322 2
Q ss_pred CCCchHHHHHHHHHHHhCCCchHHHHHHHH
Q 000194 377 KPSLEALACVGNIARAMGPVMEPHVRGLLD 406 (1880)
Q Consensus 377 ~~~~~a~~~l~~la~~~g~~~~~~l~~ll~ 406 (1880)
..+.+++.|++.|+..-+..+...+..++.
T Consensus 497 qDrd~i~~cm~~iGqnH~~lv~s~m~rfl~ 526 (823)
T KOG2259|consen 497 QDRDEILRCMGRIGQNHRRLVLSNMGRFLE 526 (823)
T ss_pred CCcHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 234589999999988876655555555553
No 90
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.35 E-value=0.47 Score=68.26 Aligned_cols=406 Identities=16% Similarity=0.112 Sum_probs=214.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhhhh----------
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELDVQ---------- 1358 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~~~---------- 1358 (1880)
..+......+.|..|+-+++...... ++.....-.|..+|.+.|+.+.+...++.+.. ..+..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 34667777888999998887776532 34456778899999999999999988875432 11110
Q ss_pred --------hcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHh
Q 000194 1359 --------LKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT--PAEPAARLE 1428 (1880)
Q Consensus 1359 --------~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~ 1428 (1880)
....-+.+.|++++|...|++.+...++. .....++-.++.+.|+|+.-....+.... +.+....
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~-- 422 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV-- 422 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--
Confidence 00112457899999999999998764432 34566778899999999877766654322 1111111
Q ss_pred HHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhh
Q 000194 1429 MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQL 1508 (1880)
Q Consensus 1429 ~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L 1508 (1880)
......+..++++....++..++.............+ ..+.-...+......++ |..| +
T Consensus 423 ---~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l-----~~~~~~~~a~~~~~~g~----~~eA---------~ 481 (1157)
T PRK11447 423 ---RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL-----QNDRLAQQAEALENQGK----WAQA---------A 481 (1157)
T ss_pred ---HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHCCC----HHHH---------H
Confidence 1122233445666666665544321000000000000 00000000000001111 1111 1
Q ss_pred hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhH
Q 000194 1509 SELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQ 1587 (1880)
Q Consensus 1509 ~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~~lk~a~laRk~g~~~~ 1587 (1880)
..++++++. .|.. ....-.+-..+ ....+++.=.. ..+.++ ..| ++...+...+-+..+.|+.+.
T Consensus 482 ~~~~~Al~~--~P~~----~~~~~~LA~~~-----~~~G~~~~A~~--~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 482 ELQRQRLAL--DPGS----VWLTYRLAQDL-----RQAGQRSQADA--LMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHHHHh--CCCC----HHHHHHHHHHH-----HHcCCHHHHHH--HHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHH
Confidence 112222211 1110 11000011111 11122221111 122222 123 446667777777788889988
Q ss_pred HHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcc
Q 000194 1588 ARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTN 1667 (1880)
Q Consensus 1588 a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1667 (1880)
|...+.++..-........+.........++.+..+-..|+ ..+|+..++. .+ .
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~---~~eA~~~l~~-------~p---------------~- 601 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK---EAEAEALLRQ-------QP---------------P- 601 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC---HHHHHHHHHh-------CC---------------C-
Confidence 88887765321110000000000001223456666666774 5778876651 00 0
Q ss_pred hhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHH
Q 000194 1668 VPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVT 1747 (1880)
Q Consensus 1668 ~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~ 1747 (1880)
....++.+|.|..+. ...++.+..|+++++.+|++..+|..+|...... + -...|++
T Consensus 602 ---~~~~~~~La~~~~~~------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~-------g-------~~~eA~~ 658 (1157)
T PRK11447 602 ---STRIDLTLADWAQQR------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ-------G-------DLAAARA 658 (1157)
T ss_pred ---CchHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-------C-------CHHHHHH
Confidence 123456788887665 4578999999999999999999999998764431 1 2236677
Q ss_pred HHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000194 1748 GYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1880)
Q Consensus 1748 ~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1880)
.|-+.+... ........++-.+|...|...+..+.+++.+..-
T Consensus 659 ~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 659 QLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 777666543 2233445567778888888877777666665443
No 91
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.25 E-value=0.13 Score=66.95 Aligned_cols=418 Identities=15% Similarity=0.130 Sum_probs=201.5
Q ss_pred CCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 143 GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
|+..-+.++++++|.-.|..+ +...+..++..|..-..| .......-..++..+..+| .+...|-++.
T Consensus 210 G~l~m~iie~Elkr~~~w~~~----------l~~~~~~~~~~~~~~~~~-~~~~kk~~~l~~kQeqLlr-v~~~lLlNLA 277 (708)
T PF05804_consen 210 GSLCMEIIEHELKRHDLWQEE----------LRKKKKAAEEKPEAKKDY-EKELKKLQTLIRKQEQLLR-VAFYLLLNLA 277 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHhhhhhhccchhhhhhH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 445566778888877766431 111111223333221111 1222333344444445555 3444454444
Q ss_pred HHHhhhchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--hhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000194 223 RVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--GEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1880)
Q Consensus 223 ~~i~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--~~~~~~~~~~i~~~ll~~~~~~~~~Vr~ 299 (1880)
+... ...... ..+++-+...|.+.+ .+....++.+|.-|.-.. .+.|. -..+++.+.+.+.+++..++.
T Consensus 278 ed~~-----ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~ 349 (708)
T PF05804_consen 278 EDPR-----VELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVN 349 (708)
T ss_pred cChH-----HHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHH
Confidence 3222 111211 345555666666553 454554444554443211 11221 123677788888888888999
Q ss_pred HHHHHhHhHhhhCh--hhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchh-hhhhhhhHHHHHHHHhhcCC-C
Q 000194 300 SITSLLPRIAHFLR--DRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG-ELFHYLPTITSHLREAIAPR-R 375 (1880)
Q Consensus 300 ~~~~~i~~la~~~~--~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~l~~~-~ 375 (1880)
.++.++-.++.... ..+++ ..++|.|...|.+++.|..++..|-+++..-.. .+..|-+ .++.+.+.+... .
T Consensus 350 ~aLrlL~NLSfd~~~R~~mV~---~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~Td-cIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 350 VALRLLFNLSFDPELRSQMVS---LGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTD-CIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHhCcCHHHHHHHHH---CCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcc-hHHHHHHHHHhCCC
Confidence 99999998875432 12222 346777778888777777788878777653221 2333333 345554444322 2
Q ss_pred CCCCchHHHHHHHHHHHhCCCchHH-HH-HHHHHHHhc---CCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000194 376 GKPSLEALACVGNIARAMGPVMEPH-VR-GLLDIMFSA---GLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1880)
Q Consensus 376 ~~~~~~a~~~l~~la~~~g~~~~~~-l~-~ll~~l~~~---~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1880)
.+...+++..+-.++..- .-... .+ ..++.|+.. .-++-+...++.++.+-++......+-+-+.+..+..+
T Consensus 426 ~~v~~eliaL~iNLa~~~--rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~- 502 (708)
T PF05804_consen 426 EEVQLELIALLINLALNK--RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSG- 502 (708)
T ss_pred ccccHHHHHHHHHHhcCH--HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC-
Confidence 222223332222222210 00010 01 122333321 12333456677776654443333222222222211000
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccC---------CCcchhhHHHHHhhhccCCChHHHHH
Q 000194 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFK---------GHDLLEFARDSVVLYLDDEDKATRKD 521 (1880)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~---------~~~l~~~v~~~~~~~l~~~~~~VR~a 521 (1880)
++.+....++.+|+.+... .+.+.||+.+.+.+... ++++...
T Consensus 503 --------------------------~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~--~dDl~LE 554 (708)
T PF05804_consen 503 --------------------------DSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS--EDDLLLE 554 (708)
T ss_pred --------------------------CcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC--ChHHHHH
Confidence 1223456677777766433 24566777766655443 3456666
Q ss_pred HHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc---C-CCCcchhhcc
Q 000194 522 AALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY---G-NRGFDDFLAQ 597 (1880)
Q Consensus 522 Aa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~---~-~~~fd~~L~~ 597 (1880)
++..++.+.. +..+. .+-. ...++..++ .|+.. -.| |.++...++-+|. . ....+..+.+
T Consensus 555 ~Vi~~gtla~-d~~~A---~lL~---------~sgli~~Li-~LL~~-kqe-DdE~VlQil~~f~~ll~h~~tr~~ll~~ 618 (708)
T PF05804_consen 555 VVILLGTLAS-DPECA---PLLA---------KSGLIPTLI-ELLNA-KQE-DDEIVLQILYVFYQLLFHEETREVLLKE 618 (708)
T ss_pred HHHHHHHHHC-CHHHH---HHHH---------hCChHHHHH-HHHHh-hCc-hHHHHHHHHHHHHHHHcChHHHHHHHhc
Confidence 6666654432 21110 0000 001122222 23322 223 4455555554442 0 1111223345
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCc
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNP 631 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p 631 (1880)
.+.+..++..++|.+.+||..+-.+|.-++++.+
T Consensus 619 ~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 619 TEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred cchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 5678888999999999999999999988888774
No 92
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.15 E-value=0.056 Score=64.88 Aligned_cols=104 Identities=13% Similarity=0.236 Sum_probs=71.9
Q ss_pred CChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhh
Q 000194 81 NDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDW 160 (1880)
Q Consensus 81 ~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~ 160 (1880)
.....+.|++.++....+.. .++.+...+|.++|..-+. +.-.-|--.+|+++-+++.. ...+++++.-+..+-.+
T Consensus 236 ~smknq~a~V~lvr~~~~ll-~~n~q~~~q~rpfL~~wls-~k~emV~lE~Ar~v~~~~~~--nv~~~~~~~~vs~L~~f 311 (898)
T COG5240 236 ASMKNQLAGVLLVRATVELL-KENSQALLQLRPFLNSWLS-DKFEMVFLEAARAVCALSEE--NVGSQFVDQTVSSLRTF 311 (898)
T ss_pred cccccchhheehHHHHHHHH-HhChHHHHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHH
Confidence 34567788888887777664 2345555667788887774 22245556678888887764 35677888777766555
Q ss_pred hcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000194 161 LRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1880)
Q Consensus 161 l~~~~~~~~R~aA~~~l~~la~~~p~~l~ 189 (1880)
|.. .+...|.+|+.+|.+||..-|..+.
T Consensus 312 L~s-~rv~~rFsA~Riln~lam~~P~kv~ 339 (898)
T COG5240 312 LKS-TRVVLRFSAMRILNQLAMKYPQKVS 339 (898)
T ss_pred Hhc-chHHHHHHHHHHHHHHHhhCCceee
Confidence 644 4457899999999999988776543
No 93
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.0067 Score=67.83 Aligned_cols=340 Identities=16% Similarity=0.188 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc------chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH
Q 000194 65 RFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE------NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHL 138 (1880)
Q Consensus 65 ~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~------~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L 138 (1880)
++.+++ ..+.+-+.|.|...+.+|.+-+..+++....- ..+.+.||..|+...=+ | -.--.|||++..+
T Consensus 68 q~~~el-p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~---~-mlqfEAaWalTNi 142 (526)
T COG5064 68 QFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQR---D-MLQFEAAWALTNI 142 (526)
T ss_pred Hhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcch---h-HHHHHHHHHHhhh
Confidence 344444 33444566789999999999999998874211 13346888888864322 1 1223799999988
Q ss_pred hhhCCCCchhHHHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchH--HHHHHHHHHhcCCch--hHHHH
Q 000194 139 ARAGGAMTADEVEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVA--EFVDAIWVALRDPTL--AVRER 213 (1880)
Q Consensus 139 ~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~--~i~~~i~~~l~D~~~--~VR~a 213 (1880)
+.....-+.-.|+. -++..++.|. +.....|..|+.+|+-+|..++. +..|+- ..++.++..+....+ .+-+.
T Consensus 143 aSGtt~QTkvVvd~~AVPlfiqlL~-s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn 220 (526)
T COG5064 143 ASGTTQQTKVVVDAGAVPLFIQLLS-STEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRN 220 (526)
T ss_pred ccCcccceEEEEeCCchHHHHHHHc-CchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHH
Confidence 76321111111221 3555566554 34456899999999999865443 122221 234444554444433 32233
Q ss_pred HHHHHHHHHHHHhhhchhhHHHH--HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHHHHHHh
Q 000194 214 AVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEIVLRYL 290 (1880)
Q Consensus 214 A~~al~~~~~~i~~r~~~~~~~~--~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~ll~~~ 290 (1880)
+-..|..+. |.....+.| +.+.+|.+..-+-.- +.++..-|+-++.-|.+...+.+..-++. +...++..+
T Consensus 221 ~TWtLSNlc-----RGknP~P~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL 294 (526)
T COG5064 221 ATWTLSNLC-----RGKNPPPDWSNISQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL 294 (526)
T ss_pred hHHHHHHhh-----CCCCCCCchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh
Confidence 445555443 332233344 456666665544443 36788888888888877766655544442 344677778
Q ss_pred hcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHHHHHHhhchhhhhhhhh-HHHHH
Q 000194 291 EHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIALGEMAGALDGELFHYLP-TITSH 366 (1880)
Q Consensus 291 ~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~--r~~a~~alg~la~~v~~~~~p~l~-~i~~~ 366 (1880)
.|.+..|+.-++..+|.+..-+..+..- .+ -..++.+...|.++++ |..|+-+|+++...--+.+...++ .+++-
T Consensus 295 s~~sa~iqtPalR~vGNIVTG~D~QTqv-iI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPp 373 (526)
T COG5064 295 SHESAKIQTPALRSVGNIVTGSDDQTQV-IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPP 373 (526)
T ss_pred cCccccccCHHHHhhcCeeecCccceeh-heecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchH
Confidence 8999889988999999887543322100 00 2334455555666554 667888888874433333222221 12333
Q ss_pred HHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000194 367 LREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQ 423 (1880)
Q Consensus 367 l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~ 423 (1880)
+...+....-+.+.+| ||+..-...|..=.| +.+..|++.|.-.++.+.|..
T Consensus 374 Li~lls~ae~k~kKEA--CWAisNatsgg~~~P---D~iryLv~qG~IkpLc~~L~~ 425 (526)
T COG5064 374 LIHLLSSAEYKIKKEA--CWAISNATSGGLNRP---DIIRYLVSQGFIKPLCDLLDV 425 (526)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHhhhccccCCc---hHHHHHHHccchhHHHHHHhc
Confidence 3333322211111233 444433333443333 335555666655555554443
No 94
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.14 E-value=3.2 Score=59.91 Aligned_cols=194 Identities=13% Similarity=0.010 Sum_probs=118.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccc----cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENV----RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
++...|..++.+..+.|+++.|...+.++...+|....... .........+..+.....+|+ ..+|+..+++.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~---~~eA~~~~~~A 377 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN---LAQAERLYQQA 377 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 56889999999999999999999999998877653210000 000000112233555666774 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+..... .+.++..+|.-.... ...++.++.|+++++.+|+...+|+.++...
T Consensus 378 l~~~P~----------------------~~~a~~~Lg~~~~~~------g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 378 RQVDNT----------------------DSYAVLGLGDVAMAR------KDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHhCCC----------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 653110 112333444443332 2457888999999999999999999887764
Q ss_pred HH-----HHHhhhc--cCCC---------------------CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1723 TA-----VMSHYTL--RGLP---------------------SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1723 ~~-----~~~~~~~--~~~~---------------------~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
.. ....... ...+ .....-...|++.|-+++... +. ......++-.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~-~~~~~~~LA~ 503 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PG-SVWLTYRLAQ 503 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHH
Confidence 21 1100000 0000 000123468888999988875 22 3445677778
Q ss_pred HHHhcCCcHHHHHHHHhcccCCC
Q 000194 1775 LWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
+++..|...+....+++.+..-|
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC
Confidence 88888888877777776654333
No 95
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.10 E-value=0.048 Score=67.07 Aligned_cols=179 Identities=18% Similarity=0.161 Sum_probs=113.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHH
Q 000194 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1880)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1880)
+..|+. ++.|+++.||..+.++|+.. ..+.....|...+.|+++.||..++..++..... | .+.+
T Consensus 88 ~~~L~~-~L~d~~~~vr~aaa~ALg~i-------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-~---~~~L--- 152 (410)
T TIGR02270 88 LRSVLA-VLQAGPEGLCAGIQAALGWL-------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-P---GPAL--- 152 (410)
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHhcC-------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-h---HHHH---
Confidence 334444 45789999999999999631 2245678888889999999999999888863321 1 1222
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1880)
... ++ + .++.+|..|+.+||.+-... .++.|...+.+. ++.|+..++.+++.+..
T Consensus 153 -~~~---L~-d-~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d~-----~~~VR~aA~~al~~lG~---- 207 (410)
T TIGR02270 153 -EAA---LT-H-EDALVRAAALRALGELPRRL----------SESTLRLYLRDS-----DPEVRFAALEAGLLAGS---- 207 (410)
T ss_pred -HHH---hc-C-CCHHHHHHHHHHHHhhcccc----------chHHHHHHHcCC-----CHHHHHHHHHHHHHcCC----
Confidence 222 33 3 68899999999999885421 122244445553 88999998888765532
Q ss_pred chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
++..+.++....+. ....+..+...++.. |. |..++.|..+++.+ .+|+.++.++|.+
T Consensus 208 ------~~A~~~l~~~~~~~-g~~~~~~l~~~lal~----~~--------~~a~~~L~~ll~d~---~vr~~a~~AlG~l 265 (410)
T TIGR02270 208 ------RLAWGVCRRFQVLE-GGPHRQRLLVLLAVA----GG--------PDAQAWLRELLQAA---ATRREALRAVGLV 265 (410)
T ss_pred ------HhHHHHHHHHHhcc-CccHHHHHHHHHHhC----Cc--------hhHHHHHHHHhcCh---hhHHHHHHHHHHc
Confidence 12334444433322 222333233233321 21 46788888888754 4999999999998
Q ss_pred c
Q 000194 802 G 802 (1880)
Q Consensus 802 g 802 (1880)
|
T Consensus 266 g 266 (410)
T TIGR02270 266 G 266 (410)
T ss_pred C
Confidence 7
No 96
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.09 E-value=0.089 Score=68.51 Aligned_cols=367 Identities=17% Similarity=0.153 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhc
Q 000194 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740 (1880)
Q Consensus 661 ~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d 740 (1880)
.++.+|.++++...-..+-.-..++..|++.+..+ +..+...+...+..|+-.....-.=--..++|.+.+.+..
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-----n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-----NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC
Confidence 56777888887654333333345677777777653 5666666666777666432211111123578888888865
Q ss_pred CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcc
Q 000194 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHG 820 (1880)
Q Consensus 741 ~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~ 820 (1880)
. +.+.+..|+..|..+....... +...--.+++.|..+|+++ ..+.-+++++..+..-|..+.
T Consensus 343 ~-~~~l~~~aLrlL~NLSfd~~~R--~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~----------- 405 (708)
T PF05804_consen 343 E-NEDLVNVALRLLFNLSFDPELR--SQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARS----------- 405 (708)
T ss_pred C-CHHHHHHHHHHHHHhCcCHHHH--HHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHH-----------
Confidence 4 4567888999888876554332 1111123556666677654 345556666665543222210
Q ss_pred cccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCc--c
Q 000194 821 EVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL--P 898 (1880)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l--~ 898 (1880)
++ . | +-+++.|+++|-..+.......++..+.++...- +...-+ .
T Consensus 406 ----------------------~f----~----~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaqlm~~g 452 (708)
T PF05804_consen 406 ----------------------MF----A----Y-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK--RNAQLMCEG 452 (708)
T ss_pred ----------------------HH----h----h-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH--HHHHHHHhc
Confidence 00 0 1 1134455554433221111112222222222110 000000 1
Q ss_pred hhhHHHHHH-HhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHh
Q 000194 899 KVLPDLFHT-VRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977 (1880)
Q Consensus 899 ~iip~ll~~-l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l 977 (1880)
..++.++.. +++.+ .+.-.+..+++.=-...+..+.+|+.++...+.. .+. + ...+.+++.++.--
T Consensus 453 ~gL~~L~~ra~~~~D-~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~----~~~-----e---e~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 453 NGLQSLMKRALKTRD-PLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS----GDS-----E---EFVVECLGILANLT 519 (708)
T ss_pred CcHHHHHHHHHhccc-HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc----CCc-----H---HHHHHHHHHHHhcc
Confidence 223333332 22222 1111111111111112234466777777766542 110 1 14555555554322
Q ss_pred --hhhhhccch--hhHHHHHHhcccccccCchhhHHHHHHHHHHHhcc--hhhhh--hhhHHHHHHhhcC-CCcHHHHHH
Q 000194 978 --NDEFRTHLP--VILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT--LDEHM--HLLLPALIRLFKV-DAPVDIRRA 1048 (1880)
Q Consensus 978 --~~~f~~yl~--~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~--~~~~~--~~ilp~l~~~l~~-~~~~~vr~~ 1048 (1880)
+.++..++. .++|.+.+.|.... +.+ ...+.++-.+.++... ....+ ..+++.++.++.. ....+.-..
T Consensus 520 ~~~ld~~~ll~~~~llp~L~~~L~~g~-~~d-Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQ 597 (708)
T PF05804_consen 520 IPDLDWAQLLQEYNLLPWLKDLLKPGA-SED-DLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQ 597 (708)
T ss_pred cCCcCHHHHHHhCCHHHHHHHHhCCCC-CCh-HHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHH
Confidence 335555553 68899998886432 222 2333332222222211 11222 1468888888853 245666677
Q ss_pred HHHHHHhhcccccccchh---HhHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 000194 1049 AIETLTRLIPRVQVTGHI---SSLVHHLKLVLDGKNDELRKDAVDALCCLAH 1097 (1880)
Q Consensus 1049 ai~~l~~l~~~~~~~~~~---~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~ 1097 (1880)
.+-++..+...-.-.+++ +.++.-++..+++.|+++|+.+=.+|-.++.
T Consensus 598 il~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 598 ILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 788888887663322222 4567778899999999999888777766653
No 97
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.09 E-value=0.014 Score=68.99 Aligned_cols=196 Identities=18% Similarity=0.208 Sum_probs=132.5
Q ss_pred HHHHhcCC-chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000194 199 IWVALRDP-TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1880)
Q Consensus 199 i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1880)
.+..+++. ...-|+.| +.++...+.+..-..=.+++..++..+..-|++..+.-.+.-|+.+|++++++.+.-+..
T Consensus 291 ~l~~~~g~e~a~~~k~a---lsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 291 LLKEISGSERASERKEA---LSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHhccCccchhHHHHH---HHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 44555544 33334444 334444443222122346688888888888887544455777888999999977666666
Q ss_pred HHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHhhchh-
Q 000194 278 RYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERD-SGFIALGEMAGALDG- 354 (1880)
Q Consensus 278 ~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~-~a~~alg~la~~v~~- 354 (1880)
+-+-.+..++..- +..+..++.++=.++-.++.+.|..-+. .+.+.+++ ....|. +++.++..+.+.+..
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~----~i~~~Ilt---~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV----NISPLILT---ADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH----HHhhHHhc---CcchHHHHHHHHHHHHHhhcCHH
Confidence 6665555666554 4456677888878888888888865332 23333333 223454 455588888888765
Q ss_pred hhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhC-CCchHHHHHH
Q 000194 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG-PVMEPHVRGL 404 (1880)
Q Consensus 355 ~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g-~~~~~~l~~l 404 (1880)
++-+.+++|++.+.++.......++..++-|+-.+...+| +.|.||+..+
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 4668899999999999977766777889999999999999 7899999865
No 98
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.08 E-value=0.076 Score=65.97 Aligned_cols=259 Identities=14% Similarity=0.217 Sum_probs=162.0
Q ss_pred chHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhc-----CCcchhHHHHHHHHHHHH
Q 000194 854 YSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRT-----CDDYLKDYITWKLGTLVS 928 (1880)
Q Consensus 854 ~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~-----~~~~~~~~~~~~l~~lv~ 928 (1880)
+...++..|..+++-+.. ....-+..++|.++...+..+.|+.+.+++.+...++. ++|..--++|..+|.+++
T Consensus 23 ~~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir 101 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIR 101 (435)
T ss_dssp CHHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHH
Confidence 346778888888854432 33456999999999999999999999999988877642 345567789999999999
Q ss_pred HHH----HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh-hhhhccchhhHHHHHHhcccccccC
Q 000194 929 IVR----QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN-DEFRTHLPVILPCCIQVLSDAERCN 1003 (1880)
Q Consensus 929 ~~~----~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~-~~f~~yl~~l~p~ll~~l~~~~~~~ 1003 (1880)
.+. ..+..+-+.+++.+...++..-. .....++++++.+..... +.+-+....++|.++.---- +...
T Consensus 102 ~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~------EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lW-e~~g 174 (435)
T PF03378_consen 102 FVCEADPEAVSQFEEALFPPFQEILQQDVQ------EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALW-ERRG 174 (435)
T ss_dssp HS-GGGHH---HHHHHHHHHHHHHHHTT-T------TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGG-GSTT
T ss_pred hccCCChhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchh-ccCC
Confidence 754 23557777888888877775421 123357777777776665 56666677777777743211 1122
Q ss_pred chhhHHHHHHHHHHHhcch---hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc---ccccchhHhHHHHHHHhh
Q 000194 1004 DYTYVLDILHTLEVFGGTL---DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR---VQVTGHISSLVHHLKLVL 1077 (1880)
Q Consensus 1004 ~~~~~~~il~~l~~~g~~~---~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~---~~~~~~~~~ii~~l~~~l 1077 (1880)
.-....+.++++..-+... ..++..++..+.+++.....+ ..+.+.+..+... ..+.+|+..|+..+.+=|
T Consensus 175 niPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D---~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RL 251 (435)
T PF03378_consen 175 NIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND---HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRL 251 (435)
T ss_dssp THHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH---HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 2334567777776544332 367777777777777543333 3455556555544 346789999998877666
Q ss_pred C-CCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhCCCCchhHHHHHHHH
Q 000194 1078 D-GKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRL 1131 (1880)
Q Consensus 1078 ~-~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~~~~~~~~~~~~~~~~~ 1131 (1880)
. ++....++..+-.++.++...|.++ +...+. +++..-|..+.+++
T Consensus 252 q~skT~kf~~~fv~F~~~~~~~~g~~~------li~~id--~IQ~glF~~il~~v 298 (435)
T PF03378_consen 252 QSSKTEKFVKRFVVFLSLFAIKYGPDF------LIQTID--SIQPGLFGMILEKV 298 (435)
T ss_dssp HHC--HHHHHHHHHHHHHHHHHH-HHH------HHHHHH--TTSTTHHHHHHHHT
T ss_pred hhCCcHHHHHHHHHHHHHHHHHcCHHH------HHHHHH--HhcCCcHHHHHHHH
Confidence 5 4446677778888888888887764 333332 25555566555543
No 99
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.07 E-value=0.02 Score=67.72 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=116.0
Q ss_pred CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhH-HHHHHHHHHH
Q 000194 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAV-RERAVEALRA 220 (1880)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~V-R~aA~~al~~ 220 (1880)
+-+.|.+++..++..++|.|.+..++..|.-|+.+|++++.+.|..|+.+..-.+..++.+-.|++..| |.|+.+|+..
T Consensus 319 sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~ 398 (516)
T KOG2956|consen 319 SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTT 398 (516)
T ss_pred chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 446788899999999999998778888999999999999999999999999999999999999998765 5555555554
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000194 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1880)
Q Consensus 221 ~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~ 299 (1880)
+..+... ..+..+.+.++. . |....-+++.++..+.+ ...|.+..-++++.+.++..-++.+..||+
T Consensus 399 las~~P~-------~~I~~i~~~Ilt----~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRK 466 (516)
T KOG2956|consen 399 LASHLPL-------QCIVNISPLILT----A-DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRK 466 (516)
T ss_pred HHhhCch-------hHHHHHhhHHhc----C-cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhh
Confidence 4433221 123333343333 2 22333444446666666 455777788888999999988999999999
Q ss_pred HHHHHhHhHhhhCh
Q 000194 300 SITSLLPRIAHFLR 313 (1880)
Q Consensus 300 ~~~~~i~~la~~~~ 313 (1880)
+++-++-.+..--+
T Consensus 467 taVfCLVamv~~vG 480 (516)
T KOG2956|consen 467 TAVFCLVAMVNRVG 480 (516)
T ss_pred hHHHhHHHHHHHHh
Confidence 98866665544333
No 100
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.056 Score=68.40 Aligned_cols=219 Identities=14% Similarity=0.166 Sum_probs=145.4
Q ss_pred hhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHH
Q 000194 76 GLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVK 155 (1880)
Q Consensus 76 ~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~ 155 (1880)
..++.+.+..|-+|+.-+..+++-.....-.+-.+........+. +.|.=|.-.|-+.+..|++. +.. ..++
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk-dedsyvyLnaI~gv~~Lcev---y~e----~il~ 805 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK-DEDSYVYLNAIRGVVSLCEV---YPE----DILP 805 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc-ccCceeeHHHHHHHHHHHHh---cch----hhHH
Confidence 445668888999999999999875321111122233334444443 55776777777777777775 122 2344
Q ss_pred HHHh-hhcCCC----cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhch
Q 000194 156 MALD-WLRGDR----VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET 230 (1880)
Q Consensus 156 ~~~~-~l~~~~----~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1880)
...+ |..+.+ +...|.+ .++..++..-+..+..|...++...+.++|||+..-|-.++..+++++....-+-
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v- 882 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV- 882 (982)
T ss_pred HHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh-
Confidence 4444 443221 2233444 7788888888999999999999999999999999999999999999998766222
Q ss_pred hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH----HHHHHHHHh-hcchhHHHHHHHHHh
Q 000194 231 RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE----VAEIVLRYL-EHRDRLVRLSITSLL 305 (1880)
Q Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~----i~~~ll~~~-~~~~~~Vr~~~~~~i 305 (1880)
..|+..++..+..-....+..-+|.+|+.++..++.+.|+.+.|-+.. ....+..+. .|++..+|..++.++
T Consensus 883 ---sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 883 ---SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred ---hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 237766666665544333346789999999999999999877774433 333444443 456666776666555
Q ss_pred HhH
Q 000194 306 PRI 308 (1880)
Q Consensus 306 ~~l 308 (1880)
..+
T Consensus 960 eei 962 (982)
T KOG4653|consen 960 EEI 962 (982)
T ss_pred HHH
Confidence 443
No 101
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.03 E-value=0.057 Score=66.41 Aligned_cols=214 Identities=18% Similarity=0.071 Sum_probs=137.3
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 000194 504 RDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFS 583 (1880)
Q Consensus 504 ~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~ 583 (1880)
-+.+...+++.+++||.+++.+++.+-. ...... |+ ..+.++++.||..++.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------------------~~a~~~----L~-~~L~~~~p~vR~aal~ 139 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------------------RQAEPW----LE-PLLAASEPPGRAIGLA 139 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------------------hHHHHH----HH-HHhcCCChHHHHHHHH
Confidence 4556677888899999999988865321 111222 22 2357899999999998
Q ss_pred hccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 584 SLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 584 ~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
++.. .. .+-.+.+..+++|+++.||..|+.++|.+.... ..|.+.. ...+ .++.+|..|+
T Consensus 140 al~~-r~-------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~---a~~~L~~--------al~d-~~~~VR~aA~ 199 (410)
T TIGR02270 140 ALGA-HR-------HDPGPALEAALTHEDALVRAAALRALGELPRRL---SESTLRL--------YLRD-SDPEVRFAAL 199 (410)
T ss_pred HHHh-hc-------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc---chHHHHH--------HHcC-CCHHHHHHHH
Confidence 8852 11 122566777889999999999999999987643 2343332 1234 6788999998
Q ss_pred HHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCc
Q 000194 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~ 743 (1880)
..++.+.. + .-...++...... .......+...++.. |. +..++.+...+++.
T Consensus 200 ~al~~lG~--~--------~A~~~l~~~~~~~-----g~~~~~~l~~~lal~----~~------~~a~~~L~~ll~d~-- 252 (410)
T TIGR02270 200 EAGLLAGS--R--------LAWGVCRRFQVLE-----GGPHRQRLLVLLAVA----GG------PDAQAWLRELLQAA-- 252 (410)
T ss_pred HHHHHcCC--H--------hHHHHHHHHHhcc-----CccHHHHHHHHHHhC----Cc------hhHHHHHHHHhcCh--
Confidence 88866532 1 1223444433322 122222222222211 22 26777778887764
Q ss_pred hhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccc
Q 000194 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~ 808 (1880)
.+|..++.++|.+ | .|..++.|+..+.++ .+|+.+-.++..|-.+|...
T Consensus 253 -~vr~~a~~AlG~l----g--------~p~av~~L~~~l~d~---~~aR~A~eA~~~ItG~~l~~ 301 (410)
T TIGR02270 253 -ATRREALRAVGLV----G--------DVEAAPWCLEAMREP---PWARLAGEAFSLITGMDVAL 301 (410)
T ss_pred -hhHHHHHHHHHHc----C--------CcchHHHHHHHhcCc---HHHHHHHHHHHHhhCCCcch
Confidence 3899999999975 2 256788888888754 48888988888876665543
No 102
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.53 Score=56.61 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=116.2
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccch--hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 000194 164 DRVEYRRFAAVLILKEMAENASTVFN--VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1880)
Q Consensus 164 ~~~~~~R~aA~~~l~~la~~~p~~l~--~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l 241 (1880)
+..|+.|....-++.++.. |..+- +-+.+++..+..-.+||+..+|..|+..|+...+. .+.....+++.++
T Consensus 228 s~~~~~ritd~Af~ael~~--~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~----~P~kv~th~~~~l 301 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKR--PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG----APDKVRTHKTTQL 301 (533)
T ss_pred hhcccchHHHHHHHHHHhC--cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc----CcHHHHHhHHHHH
Confidence 4456778777666665543 33333 67888888888999999999999999988876543 3445567788999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000194 242 EATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1880)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~ 315 (1880)
+.+..||-++.+.++.+-++.+|..+++ ..+..+.+++-++.-.+-.+.++.++.+|.++..+.+.|+.++...
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 9999999887778899999999988888 4456677888888888888889999999999999999999988643
No 103
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.011 Score=74.41 Aligned_cols=223 Identities=19% Similarity=0.219 Sum_probs=161.2
Q ss_pred hcCCChhHHHHHHHhccC--CCCc-chhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHH
Q 000194 570 VADADVTVRHSIFSSLYG--NRGF-DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~--~~~f-d~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l 646 (1880)
+.||.+-+|...+..+.. ..+. .+......++......+.|++.-|--.|+..+..|++..|..++|-+-. ++.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e---~Y~ 812 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSE---EYL 812 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHH---HHH
Confidence 478889999988887741 0111 1112223466777778889888888889998888888888777665433 222
Q ss_pred HHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhh
Q 000194 647 TYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726 (1880)
Q Consensus 647 ~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~ 726 (1880)
.. ..- ..++.|-...++++.++.+.|+.+..|...++..++...+++ +...+...+..+|.|..........+
T Consensus 813 s~-k~k-~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep-----d~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 813 SE-KKK-LQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP-----DHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred hc-ccC-CCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc-----hHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 21 111 113444455689999999999999999999999999999964 56677788888999888766666668
Q ss_pred HHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCC--cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 727 ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYN--EYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 727 ~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~--~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+.++...++...+-..+.-+|.+|+.-+..+..++|....|.. ..-++...+....+.+.+..+|..+..++-.+-
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 8888888888877555678999999999999999998766643 112456666666666667788888887776653
No 104
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.97 E-value=0.23 Score=58.66 Aligned_cols=328 Identities=15% Similarity=0.123 Sum_probs=175.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCchhh-HHHHHHHHHH------HHHhhhChHHHHHHHHHH-------HHH-HHhhhcCC
Q 000194 17 GAGGGSLDALNRILADLCTHGNPKEG-ASLALRKHIE------EQARDLGGEAFSRFMDQL-------YDR-ISGLLESN 81 (1880)
Q Consensus 17 ~~~~~~~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~------~~~~~~~~~~~~~~~~~l-------~~~-i~~l~~s~ 81 (1880)
++.+++|.+|. -+||+++-.-+. |..-+..+++ +++.++++.+|..|--.| +.- |.-+....
T Consensus 43 ~~~~g~p~l~~---l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~ 119 (728)
T KOG4535|consen 43 TPELGSPSLMT---LTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAES 119 (728)
T ss_pred CCCCCCceeeE---EecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666553 466777543332 4344444443 344556666665553323 222 22344444
Q ss_pred ChhhhhhHHHHHhHhhccc-cCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCC--------------
Q 000194 82 DAAENLGALRAIDELIDVA-LGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAM-------------- 145 (1880)
Q Consensus 82 ~~~~r~~~i~ai~~Li~~~-~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~-------------- 145 (1880)
.+..-.-.+.++..|+.-. ... ..+.+.+|.+.++..+. ..|+.|+-.+.-.+|.++.+....
T Consensus 120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~-~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~ 198 (728)
T KOG4535|consen 120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIR-HKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSS 198 (728)
T ss_pred CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccc
Confidence 4444555677777776542 222 24667889999999997 569999988888888887642211
Q ss_pred --------chhH-------------------------------------------HHHHHHHHHhhhcCCCcchhHHHHH
Q 000194 146 --------TADE-------------------------------------------VEFQVKMALDWLRGDRVEYRRFAAV 174 (1880)
Q Consensus 146 --------~~~~-------------------------------------------v~~~~~~~~~~l~~~~~~~~R~aA~ 174 (1880)
++|. .-..+.++.+.. ......|..+.
T Consensus 199 n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~--~~ps~~rle~~ 276 (728)
T KOG4535|consen 199 NSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGST--YEPSPMRLEAL 276 (728)
T ss_pred cccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCc--cCCchhHHHHH
Confidence 1111 001111111111 11234788899
Q ss_pred HHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh--hHH------HHHHHHHHHH--
Q 000194 175 LILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR--WRV------QWYYRMFEAT-- 244 (1880)
Q Consensus 175 ~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~--~~~------~~~~~~l~~~-- 244 (1880)
++|..+|.+-+- ...|+.++...|-.++.|+.+.+..-++..+..+..-+.+++.. .+. -|....+..+
T Consensus 277 qvl~~~a~~~~~-~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~ 355 (728)
T KOG4535|consen 277 QVLTLLARYFSM-TQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPR 355 (728)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChh
Confidence 999988887443 35688899999999999999999988888777665444322211 011 1211110000
Q ss_pred --HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHH-HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000194 245 --QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAE-IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1880)
Q Consensus 245 --~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~-~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl 321 (1880)
-++.... -.-+.+.++..+.....+-+..--...+. .+.++-+|++..|+.+++.+++.+.-.-.-.....+.
T Consensus 356 ~~YDs~~~T----l~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv 431 (728)
T KOG4535|consen 356 ALYDSEHPT----LQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV 431 (728)
T ss_pred hhhhhcCCC----chhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH
Confidence 0011110 12233333333322111111111111222 3334446788889999988887655322211122234
Q ss_pred HHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhh
Q 000194 322 KICMNHILTVLRIP--AERDSGFIALGEMAGALDGE 355 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~--~~r~~a~~alg~la~~v~~~ 355 (1880)
......++..|.+. ..|.+++-++|+|..++-..
T Consensus 432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~ 467 (728)
T KOG4535|consen 432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVN 467 (728)
T ss_pred HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcC
Confidence 45555555555432 35889999999998776443
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=1.2 Score=55.47 Aligned_cols=168 Identities=18% Similarity=0.200 Sum_probs=111.5
Q ss_pred HHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCch
Q 000194 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYI 681 (1880)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~ 681 (1880)
..|-..+.+....+|-.|++..+.|+...+. ...+++.....+..|... .|...|..|..+|..++.... .
T Consensus 332 ~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~h~d~Ii~sLkte-rDvSirrravDLLY~mcD~~N------a 402 (938)
T KOG1077|consen 332 NQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKKHQDTIINSLKTE-RDVSIRRRAVDLLYAMCDVSN------A 402 (938)
T ss_pred HHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHhchhh------H
Confidence 3344556677888999999999999887543 355666666667777755 788899999999999986543 3
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhc
Q 000194 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQST 761 (1880)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~ 761 (1880)
..|+.-|++.+..- ++.+++.+..-+..|++....+..=|++.++..+--+ .|-.+.+ .-.-+.+++.+.
T Consensus 403 k~IV~elLqYL~tA-----d~sireeivlKvAILaEKyAtDy~WyVdviLqLiria-gd~vsde----VW~RvvQiVvNn 472 (938)
T KOG1077|consen 403 KQIVAELLQYLETA-----DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA-GDYVSDE----VWYRVVQIVVNN 472 (938)
T ss_pred HHHHHHHHHHHhhc-----chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh-cccccHH----HHHHhheeEecc
Confidence 56777788887763 7888888888888899998888888888887765543 2332222 233344444433
Q ss_pred CcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000194 762 GYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKV 797 (1880)
Q Consensus 762 ~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~ 797 (1880)
.. +.+|. -+.+...|.. +.+.+..+|+
T Consensus 473 ed-lq~ya-----ak~~fe~Lq~---~a~hE~mVKv 499 (938)
T KOG1077|consen 473 ED-LQGYA-----AKRLFEYLQK---PACHENMVKV 499 (938)
T ss_pred hh-hhHHH-----HHHHHHHHhh---hHHHHHHHHh
Confidence 22 34443 2344445543 2444444554
No 106
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.93 E-value=0.00062 Score=57.91 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 702 NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 702 ~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
+.++.+++.+||.++...+..+.+|+++++|.++..|+|.+ ..+|.+|+++||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~-~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD-DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHhcC
Confidence 35788899999999888889999999999999999999875 48999999999964
No 107
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.92 E-value=0.5 Score=57.87 Aligned_cols=154 Identities=16% Similarity=0.243 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+..-.++++-|..|+++.|.+.-.+++...|... ...--.+-++=.+| +-.+|+...++-+.-
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a----------aa~nNLa~i~kqqg---nl~~Ai~~YkealrI--- 417 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA----------AAHNNLASIYKQQG---NLDDAIMCYKEALRI--- 417 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh----------hhhhhHHHHHHhcc---cHHHHHHHHHHHHhc---
Confidence 66777889999999999999988777777655321 11111233333455 357888888875431
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
+...|..|.-+|.=.-++. ..+..++.|.+|++++|....|+..+|..
T Consensus 418 -------------------~P~fAda~~NmGnt~ke~g------~v~~A~q~y~rAI~~nPt~AeAhsNLasi------- 465 (966)
T KOG4626|consen 418 -------------------KPTFADALSNMGNTYKEMG------DVSAAIQCYTRAIQINPTFAEAHSNLASI------- 465 (966)
T ss_pred -------------------CchHHHHHHhcchHHHHhh------hHHHHHHHHHHHHhcCcHHHHHHhhHHHH-------
Confidence 2457888888888766653 46889999999999999998888887754
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHh---HHHHHHHHHhcC
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQD---ILRLLTLWFNHG 1780 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~---~~RlLtLwf~~g 1780 (1880)
+++. -.+..||..|-.++.+.+. ..+..+. .++.+-=|.|+.
T Consensus 466 ~kDs-------Gni~~AI~sY~~aLklkPD---fpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 466 YKDS-------GNIPEAIQSYRTALKLKPD---FPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred hhcc-------CCcHHHHHHHHHHHccCCC---CchhhhHHHHHHHHHhcccchH
Confidence 3222 3677899999999998642 2223333 344444566654
No 108
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.92 E-value=3 Score=55.75 Aligned_cols=202 Identities=16% Similarity=0.128 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhccccc
Q 000194 921 WKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAE 1000 (1880)
Q Consensus 921 ~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~ 1000 (1880)
..|..+....|..+...+|.+-+++.+.+...-..+ + ....-++++.+++-.+++.+.+ +-+.+|.++......
T Consensus 755 l~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~---d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~- 828 (1549)
T KOG0392|consen 755 LFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN---D-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI- 828 (1549)
T ss_pred HHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC---c-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc-
Confidence 445556666676666666776666666655432111 0 1124567777777788888888 777777777766543
Q ss_pred ccCchhhHHHHHHHHHHH-hcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHhh
Q 000194 1001 RCNDYTYVLDILHTLEVF-GGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVL 1077 (1880)
Q Consensus 1001 ~~~~~~~~~~il~~l~~~-g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l 1077 (1880)
...+...+..|+..+ .....+.+..++..++.+++......-|..|...+..+... ..+-+|...++.+|.+.+
T Consensus 829 ---~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~m 905 (1549)
T KOG0392|consen 829 ---HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRM 905 (1549)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhccc
Confidence 333444455555443 33345666667777777776654455566677777777664 567899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccccccchh-HHHHHHHhCCCCchhHHHHHHHHhcC
Q 000194 1078 DGKNDELRKDAVDALCCLAHALGEDFTIFIP-SIHKLLLKHRLRHKEFEEIEGRLRRR 1134 (1880)
Q Consensus 1078 ~~~~~~l~~~al~~L~~l~~~~g~~f~~fip-~i~~~l~~~~~~~~~~~~~~~~~~~~ 1134 (1880)
++....+|.++-.++..++.-++-.-.++-| .+.+-|...+ +++.+.++.+.++
T Consensus 906 sd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~k---e~erkFLeqlldp 960 (1549)
T KOG0392|consen 906 SDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASK---EEERKFLEQLLDP 960 (1549)
T ss_pred ccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhH---HHHHHHHHHhcCc
Confidence 9888899999999999999888765555544 5666666542 3344445555443
No 109
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.78 Score=58.44 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC
Q 000194 63 FSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142 (1880)
Q Consensus 63 ~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~ 142 (1880)
+.+....+..-+.+.+++.++-.|..+..+++.+..... +.. .-.-|.+.|..++. +.|+.|+..|..++..+.+..
T Consensus 115 v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~~~-~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-DLV-EDSGLVDALKDLLS-DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-hhc-cccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhC
Confidence 445566677778888999888899999999999966531 100 01236778888886 678899999999999888753
Q ss_pred -CCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 000194 143 -GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRAC 221 (1880)
Q Consensus 143 -g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~ 221 (1880)
+.....+....+...++-+.+-..|+ -+.+|..+++..|+.= .-..++++.+..-|...++.|--.|...+-..
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~----qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWG----QIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhh----HHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 23334444445555555444333332 3467888888888753 45667888888888888888877777777666
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000194 222 LRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1880)
Q Consensus 222 ~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1880)
+..+.+ .....+.++-+.+...++.. + +..+.++.=++.++...++
T Consensus 267 ~~~~~~----~~~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 267 VKYLKQ----VNELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHHHHH----HHHHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChH
Confidence 554432 33445666666666666654 2 7777777767666665443
No 110
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.85 E-value=0.027 Score=73.80 Aligned_cols=193 Identities=14% Similarity=0.154 Sum_probs=145.2
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchh
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTAD 148 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~ 148 (1880)
+...+..-+.+++|.+|..|+-.+...+.-..++ ......-+..++...+- +.+..|...|+.+++.|+...+.....
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~k-DaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLK-DANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 3444556677899999999999998887654311 23333434445555553 557889999999999999986666666
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Q 000194 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKR 228 (1880)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1880)
|+...++.+++.+.+ +....|.+++-++..++. ...+..+.+.|..++++.+|.+|......+..++..+..
T Consensus 333 ~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~- 404 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKE-KKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP- 404 (815)
T ss_pred HHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC-
Confidence 777777888877754 455688999999888887 346678899999999999999999999999988876542
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000194 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1880)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1880)
......-...+.+.+..+..|.+ .++|.+|..+++.+.++.|+
T Consensus 405 -~~~~~~t~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 405 -KTVEKETVKTLVPHLIKHINDTD-KDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred -cCcchhhHHHHhHHHhhhccCCc-HHHHHHHHHHHHHHHHHhhH
Confidence 11233456788888888887774 78999999999999886664
No 111
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.78 E-value=0.011 Score=75.10 Aligned_cols=138 Identities=17% Similarity=0.212 Sum_probs=113.7
Q ss_pred CChHhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHH
Q 000194 654 ADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p 732 (1880)
.+...|-.-..+|.+++.+.| +.+.|.++.+++.+++.+.-+ +..++...+.++..+....+.-+..|++.++|
T Consensus 879 ~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~-----D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp 953 (1030)
T KOG1967|consen 879 APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP-----DVIVRVSTLRTIPMLLTESETLQTEHLSTLVP 953 (1030)
T ss_pred CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC-----ccchhhhHhhhhhHHHHhccccchHHHhHHHH
Confidence 345567788899999999887 678899999999999999864 66777788889998888888899999999999
Q ss_pred HHHHHHhcCCc--hhhHHHHHHHHHHHHhhcCcc-cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 733 LIVEALLDGAA--VTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 733 ~l~~~l~d~~~--~~~r~~Al~~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
.++..=.|.++ ..+|+.|+++|+.+.+..... +.||. |.++..+...|.+. -+.||.+|.++=+
T Consensus 954 ~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr--~~Vl~al~k~LdDk-KRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 954 YLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR--PLVLRALIKILDDK-KRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc--HHHHHHhhhccCcH-HHHHHHHHHHHhh
Confidence 99987666543 569999999999999866543 56665 78999999999644 5789999987743
No 112
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.27 Score=62.30 Aligned_cols=197 Identities=18% Similarity=0.158 Sum_probs=117.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccC------CCCcchhhccHhhHHHHHHHhCCC-CHhHHHHHHHHHHhhhcCCccccc
Q 000194 563 EKLLIAAVADADVTVRHSIFSSLYG------NRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVL 635 (1880)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~------~~~fd~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~ 635 (1880)
.+|++....+.|+.....++.-|.+ ....+.+ .-..+++.|...++++ ++++...|+.++.-|++..|..+-
T Consensus 170 kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~f-pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 170 KKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGF-PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 4556555566677776665554421 1111111 1124688888889887 689999999999999999996421
Q ss_pred HHH----HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHH
Q 000194 636 PAL----RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711 (1880)
Q Consensus 636 p~l----~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~ 711 (1880)
-.. -.++.+-|..+++- ...|+++.+|-.|-+..+..+..- .-+..++..+.- ..-.+...++..
T Consensus 249 ~vV~~~aIPvl~~kL~~Ieyi----DvAEQ~LqALE~iSR~H~~AiL~A--G~l~a~LsylDF-----FSi~aQR~Alai 317 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYI----DVAEQSLQALEKISRRHPKAILQA--GALSAVLSYLDF-----FSIHAQRVALAI 317 (1051)
T ss_pred eeecccchHHHHHhhhhhhhh----HHHHHHHHHHHHHHhhccHHHHhc--ccHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 111 12233334445554 566788888877777665443221 011122232221 122233344444
Q ss_pred HHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHH
Q 000194 712 VGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779 (1880)
Q Consensus 712 l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll 779 (1880)
...++.....+--.|+-+.+|++...|+.. +...-+.++.++..++... .++|+.++.|.
T Consensus 318 aaN~Cksi~sd~f~~v~ealPlL~~lLs~~-D~k~ies~~ic~~ri~d~f-------~h~~~kLdql~ 377 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFVMEALPLLTPLLSYQ-DKKPIESVCICLTRIADGF-------QHGPDKLDQLC 377 (1051)
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhc-------ccChHHHHHHh
Confidence 555666666666678889999999999865 3445577788888887654 34567777665
No 113
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.76 E-value=0.0095 Score=56.54 Aligned_cols=87 Identities=32% Similarity=0.465 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHH
Q 000194 563 EKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL 642 (1880)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l 642 (1880)
+.|+.....|+++.+|..++.+|+. + ..++.++.|...++|+++.||..|+..||++.. | ...|.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~---~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--~-~~~~~L---- 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGE---L----GDPEAIPALIELLKDEDPMVRRAAARALGRIGD--P-EAIPAL---- 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHC---C----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--H-HTHHHH----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH---c----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--H-HHHHHH----
Confidence 4555655589999999999999962 2 235789999999999999999999999998752 1 122222
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHH
Q 000194 643 IQLLTYLEQSSADNKCREESAKLLG 667 (1880)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1880)
...+.++ .+...|..|+..||
T Consensus 68 ---~~~l~~~-~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 ---IKLLQDD-DDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHHTC--SSHHHHHHHHHHHH
T ss_pred ---HHHHcCC-CcHHHHHHHHhhcC
Confidence 2234454 55666888888775
No 114
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.73 E-value=0.8 Score=57.48 Aligned_cols=117 Identities=14% Similarity=0.032 Sum_probs=80.8
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh---------hhhcH
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD---------VQLKE 1361 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~---------~~~~~ 1361 (1880)
.+..+..++.|.+|+.+++...... ++.....-.|..+|...|+.+.+.-+++....... .....
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 3666778888889998887766432 23345667788999999999988877764332211 11123
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhh
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKE 1416 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1880)
..|.+.|++++|+..|++.++.. +.. ......+..++...|+|+.-.+..+.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~--~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEG--DFA-EGALQQLLEIYQQEKDWQKAIDVAER 166 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCC--cch-HHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 45788899999999999887532 221 34566778888999999877666554
No 115
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.70 E-value=2.3 Score=57.81 Aligned_cols=330 Identities=14% Similarity=0.062 Sum_probs=165.4
Q ss_pred CCCCCHHHHHHHHHhccchhhhhhhccchhcccccc-----------------------------c-CCCCcHHHHHHHH
Q 000194 1283 PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSN-----------------------------R-MDANPVAVVEALI 1332 (1880)
Q Consensus 1283 ~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~-----------------------------~-~~~~~~~~~e~L~ 1332 (1880)
+-.+.+..+.....++|.+..|+.+++.-....... + .-.....+...|+
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 334667788888888888888887765432211000 0 0001122446789
Q ss_pred HHHhhcCChHHHhHHHHHHhchh--hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000194 1333 HINNQLHQHEAAVGILTYAQKEL--DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1880)
Q Consensus 1333 ~iy~~L~~~D~~~Gi~~~~~~~~--~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1880)
..|.+.|+.|.|..++......- ..+....-|-+.|++++|++.|++-....-.|+. .....+++++.++|.++..
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~--~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ--FTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhccchHHH
Confidence 99999999999998887533210 1111223488899999999999876544333432 3456788888899988755
Q ss_pred HHHHhhhcCC-CChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHH---H
Q 000194 1411 NNLCKEYWTP-AEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLL---V 1486 (1880)
Q Consensus 1411 ~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~---i 1486 (1880)
.+........ ..++ ..+......+..+.|+++...+..+.+...+...|..++..+. ..+..-+|+.- +
T Consensus 345 ~~i~~~m~~~g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~-----~~G~~~~A~~lf~~M 417 (697)
T PLN03081 345 KQAHAGLIRTGFPLD--IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG-----NHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHhCCCCC--eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH-----HcCCHHHHHHHHHHH
Confidence 5443321100 0011 1112244567778899999888877775432222211111100 00111111111 1
Q ss_pred H-hcCh--hhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC-CCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh
Q 000194 1487 R-RGKV--LESYERAYSNMVRVQQLSELEEVIDYCTLPVG-NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV 1562 (1880)
Q Consensus 1487 ~-~~~~--~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~-~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v 1562 (1880)
. .|.. ...|........+...+.|-.++.+......+ .|. ......+.+... -...++.=..++ +..-
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~-----r~G~~~eA~~~~--~~~~ 489 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLG-----REGLLDEAYAMI--RRAP 489 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHH-----hcCCHHHHHHHH--HHCC
Confidence 1 1111 11122221222222223332222221110000 000 000111111111 112233223332 2221
Q ss_pred cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1563 l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
+ ..+..+|-.+.+.|+++|+++.|..+..++.+.+|.. .......+..+-..| +..+|.+.++.+
T Consensus 490 ~--~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~----------~~~y~~L~~~y~~~G---~~~~A~~v~~~m 554 (697)
T PLN03081 490 F--KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK----------LNNYVVLLNLYNSSG---RQAEAAKVVETL 554 (697)
T ss_pred C--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC----------CcchHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 2 2357789999999999999999999999988776531 111122334444455 467898888876
Q ss_pred HH
Q 000194 1643 AM 1644 (1880)
Q Consensus 1643 ~~ 1644 (1880)
..
T Consensus 555 ~~ 556 (697)
T PLN03081 555 KR 556 (697)
T ss_pred HH
Confidence 54
No 116
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.69 E-value=0.059 Score=66.01 Aligned_cols=184 Identities=28% Similarity=0.370 Sum_probs=121.4
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.++++.+|..+...++. ....+.++.+...+.|+++.||..|...||.+..- ...|.+ +..
T Consensus 51 ~l~~~~~~vr~~aa~~l~~-------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~a~~~l-------i~~ 113 (335)
T COG1413 51 LLEDEDLLVRLSAAVALGE-------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGDP---EAVPPL-------VEL 113 (335)
T ss_pred HHcCCCHHHHHHHHHHHhh-------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---hHHHHH-------HHH
Confidence 4577899999999988852 12346799999999999999999999988875532 122322 333
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCC-------CCCChhHHHHHHHHHHHHHHhcCC
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTG-------INANNGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~-------~~~~~~v~~~~~~~l~~La~~~g~ 721 (1880)
+..+ .+..+|..+++.|+.+-.... +..++..+.+... ......++..+..+++.+..
T Consensus 114 l~~d-~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---- 178 (335)
T COG1413 114 LEND-ENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---- 178 (335)
T ss_pred HHcC-CcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----
Confidence 3434 678889999999888754322 3334444444310 00112344455555544322
Q ss_pred chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
+...+.+...+.+. +..+|..|..+||.+.... ..+...+...+.+ .++.+|..++..+|.+
T Consensus 179 ------~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~-~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 179 ------PEAIPLLIELLEDE-DADVRRAAASALGQLGSEN----------VEAADLLVKALSD-ESLEVRKAALLALGEI 240 (335)
T ss_pred ------hhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcC-CCHHHHHHHHHHhccc
Confidence 34566777778776 4579999999999875432 2455666666654 4899999999998887
Q ss_pred c
Q 000194 802 G 802 (1880)
Q Consensus 802 g 802 (1880)
|
T Consensus 241 ~ 241 (335)
T COG1413 241 G 241 (335)
T ss_pred C
Confidence 6
No 117
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.68 E-value=0.025 Score=71.89 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC
Q 000194 64 SRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142 (1880)
Q Consensus 64 ~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~ 142 (1880)
++|+.++++.+.+.++......|--=+.|+...+.--+-+ --..+..+.+.|.+.+. ..|..|+-.+..++.-+....
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls-~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALS-MPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcC-CCccchhhhHhhhhhHHHHhc
Confidence 5778888888777777555556665666777666421111 11233445566666664 578999888999998888878
Q ss_pred CCCchhHHHHHHHHHHhhhcCCCc--chhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHH
Q 000194 143 GAMTADEVEFQVKMALDWLRGDRV--EYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEA 217 (1880)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~~~~--~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~a 217 (1880)
+++..+++...++..+..=.+.++ -..|..|+..+..|.+..|. .+.+|-+.++.+|.+.|.||+-.||+.|.++
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 899999999999988765443332 57999999999999998775 8999999999999999999999999998874
No 118
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.67 E-value=0.2 Score=59.58 Aligned_cols=202 Identities=14% Similarity=0.056 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q 000194 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~--~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1880)
-++..+..+++.+.+ ++...|.+|+..+..+..+ .+..+..+..++++.+.+.++-....-+..|+.+++-+.-.+.
T Consensus 40 ~~e~~L~~~Id~l~e-K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTE-KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 344557777777754 4467899999888776544 6678888999999999999987666555556666554322211
Q ss_pred hhchhhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHH--HHHHHHHHHHHh--h-c--------
Q 000194 227 KRETRWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSR--YREVAEIVLRYL--E-H-------- 292 (1880)
Q Consensus 227 ~r~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~--~~~i~~~ll~~~--~-~-------- 292 (1880)
.......+|..+.|.+...+.+... ...|.+++.+|+-+...++...... .-+.++.++... + +
T Consensus 119 --~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 119 --AGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred --CCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 1123456777777777777766532 3455666667777666322211111 113344332211 1 1
Q ss_pred -chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhch
Q 000194 293 -RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALD 353 (1880)
Q Consensus 293 -~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~ 353 (1880)
.++.|..+++.+++-|+...+..-+..++...++.|..+|.... .|.+|.++|+.+-+...
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 23578999999999998777653334577889999999998764 58899999998766554
No 119
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.12 Score=65.41 Aligned_cols=130 Identities=23% Similarity=0.279 Sum_probs=77.4
Q ss_pred chhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH
Q 000194 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI 558 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1880)
....+.|++++|+..+. .+.+++.+.+...+.++++.||+.|+..+.++......-+. .
T Consensus 100 p~iR~lAlrtm~~l~v~--~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~---------------~---- 158 (734)
T KOG1061|consen 100 PLIRALALRTMGCLRVD--KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---------------D---- 158 (734)
T ss_pred HHHHHHHhhceeeEeeh--HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc---------------c----
Confidence 33568999999998663 24456667777888999999999999988888754432110 0
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHhccC----CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc
Q 000194 559 EELVEKLLIAAVADADVTVRHSIFSSLYG----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY 633 (1880)
Q Consensus 559 ~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~----~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1880)
..+++. +...+.|.+|.|...++.+|.+ +..-....-.+.++..++.++++.+ --.-+.++..++.+.|..
T Consensus 159 ~gl~~~-L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~---EW~qi~IL~~l~~y~p~d 233 (734)
T KOG1061|consen 159 SGLVDA-LKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECT---EWGQIFILDCLAEYVPKD 233 (734)
T ss_pred cchhHH-HHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhh---hhhHHHHHHHHHhcCCCC
Confidence 111111 2223569999999988888852 1110111112334555555555422 223445566666666653
No 120
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.65 E-value=3.3 Score=55.58 Aligned_cols=333 Identities=15% Similarity=0.071 Sum_probs=186.1
Q ss_pred CHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcH
Q 000194 1287 DIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKE 1361 (1880)
Q Consensus 1287 ~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~ 1361 (1880)
.+.+++....+.|.+..|+-.++...... ++.......|.-.....|+.|.+...++..... + . .....
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la 117 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA 117 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34567778888899989988887766432 344567777778888899999998888754321 1 1 12234
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHH
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWN 1439 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~ 1439 (1880)
..+.+.|++++|+..|++.+...++. .+....+.+++..+|+++.-....+... .+...... ....++..
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~---~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~-----~~~~~l~~ 189 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGN---SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI-----ATCLSFLN 189 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHH
Confidence 45788999999999999988654332 3556778888999999987665444321 11112111 11224667
Q ss_pred cCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhc
Q 000194 1440 MGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCT 1519 (1880)
Q Consensus 1440 l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~ 1519 (1880)
.|+++.-......+-..... .........+......++ |..| +..++.+++.
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~-------------~~~~~~~~l~~~l~~~g~----~~eA---------~~~~~~al~~-- 241 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFAL-------------ERQESAGLAVDTLCAVGK----YQEA---------IQTGESALAR-- 241 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCC-------------cchhHHHHHHHHHHHCCC----HHHH---------HHHHHHHHhc--
Confidence 88888776655433110000 000000000000011111 1111 1111112111
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhhccCCHHH-H-HHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 000194 1520 LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEV-W-QALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLL 1596 (1880)
Q Consensus 1520 ~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~-w-~~iL~~R~~v-l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~ 1596 (1880)
.+.. ......+-..... ..+++. . +-+-..++.+ +.| ++...|..++.+..+.|+++.|...+.++.
T Consensus 242 ~p~~----~~~~~~Lg~~l~~-----~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 242 GLDG----AALRRSLGLAYYQ-----SGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred CCCC----HHHHHHHHHHHHH-----cCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1110 1111111111111 111111 0 0111222222 334 468899999999999999999999999988
Q ss_pred cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHH
Q 000194 1597 QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYL 1676 (1880)
Q Consensus 1597 ~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 1676 (1880)
..+|. .+.+....+..++..|+ ..+|+..++..+...... .......+.++.
T Consensus 312 ~l~P~----------~~~a~~~La~~l~~~G~---~~eA~~~l~~al~~~P~~---------------~~~~~~~a~al~ 363 (656)
T PRK15174 312 ATHPD----------LPYVRAMYARALRQVGQ---YTAASDEFVQLAREKGVT---------------SKWNRYAAAALL 363 (656)
T ss_pred HhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHH
Confidence 77652 46777788999999995 689999998776431100 000011233333
Q ss_pred HHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000194 1677 KLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1880)
Q Consensus 1677 ~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1880)
..| ..++....|..+++.+|+..
T Consensus 364 ~~G-------------~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 364 QAG-------------KTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HCC-------------CHHHHHHHHHHHHHhChhhc
Confidence 333 45788888999988888643
No 121
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.64 E-value=0.028 Score=60.27 Aligned_cols=143 Identities=21% Similarity=0.157 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHhh-cCccchhchHHHHHHH------------HHHhcCCchhHHHHHHHHHHHHHHHHhh-------h
Q 000194 169 RRFAAVLILKEMAEN-ASTVFNVHVAEFVDAI------------WVALRDPTLAVRERAVEALRACLRVIEK-------R 228 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~-~p~~l~~~l~~i~~~i------------~~~l~D~~~~VR~aA~~al~~~~~~i~~-------r 228 (1880)
.|.+|+.+|..++.. -|+.|+.|-+.++|-- .-.++||+++||.+|+.++..+++-.+. +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 589999999999999 6778888888888643 3456899999999999999988764322 1
Q ss_pred chh---------hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhcchhHH
Q 000194 229 ETR---------WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEHRDRLV 297 (1880)
Q Consensus 229 ~~~---------~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~~~~~V 297 (1880)
... .-..++..+...+...+.........-..+.++..|+.+++ ..=...+.+++..+..+..|+++.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 100 01122333444444455443322334444556666666443 2222345566677777778888888
Q ss_pred HHHHHHHhHhHhhh
Q 000194 298 RLSITSLLPRIAHF 311 (1880)
Q Consensus 298 r~~~~~~i~~la~~ 311 (1880)
|-+++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 88888888877643
No 122
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=3.6 Score=52.51 Aligned_cols=144 Identities=11% Similarity=0.146 Sum_probs=70.4
Q ss_pred HHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHH
Q 000194 288 RYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1880)
Q Consensus 288 ~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1880)
.+++++....|-+++.+|-.+|--.|... ..+=..|-. |-....|..|.-++..+-....+ .-++.+|..|
T Consensus 289 ~flssp~~~lRfaAvRtLnkvAm~~P~~v-----~~cN~elE~-lItd~NrsIat~AITtLLKTG~e---~sv~rLm~qI 359 (865)
T KOG1078|consen 289 LFLSSPKVALRFAAVRTLNKVAMKHPQAV-----TVCNLDLES-LITDSNRSIATLAITTLLKTGTE---SSVDRLMKQI 359 (865)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHhCCccc-----cccchhHHh-hhcccccchhHHHHHHHHHhcch---hHHHHHHHHH
Confidence 34567777888888888888775444321 000011111 11234567777777666433322 2234444444
Q ss_pred HHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHhCCCChHHHHHHHH
Q 000194 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG-L--STTLVDALEQITVSIPSLLPTIQDRLL 440 (1880)
Q Consensus 368 ~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~-l--s~~l~~~l~~i~~~~p~l~~~i~~~ll 440 (1880)
-....+-..+-..-+.+++..++..+...-.-++.-+-..|.+.| . ..+..+++..+++..|.-+......|.
T Consensus 360 ~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LC 435 (865)
T KOG1078|consen 360 SSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLC 435 (865)
T ss_pred HHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 333322222222345666666666665443334443333344433 2 234556666666666654444333333
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.47 E-value=0.011 Score=56.05 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=68.0
Q ss_pred HHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc
Q 000194 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1880)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~ 764 (1880)
++.|+..+.++ .++.++..++.++|.+. -++++|.+++.+.|. +..+|..|+.+||.+-
T Consensus 1 i~~L~~~l~~~----~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQND----PDPQVRAEAARALGELG----------DPEAIPALIELLKDE-DPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTS----SSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------
Confidence 35667777332 38899999988888432 237899999999875 6889999999999762
Q ss_pred cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 765 i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
-|+.++.|...+.++.+..+|.+++.+||
T Consensus 60 ------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 15678889999988778889999999886
No 124
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.43 E-value=8 Score=54.18 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHH-hcCCcchHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQW-SLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw-~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
.+..+|..++..+.+.|+++.|...+.++..... .+..+.|..+-..+ ..| +..+|.+.+..+.+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi----------~Pd~~Ty~sLL~a~~k~G---~le~A~~l~~~M~k 782 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGL----------CPNTITYSILLVASERKD---DADVGLDLLSQAKE 782 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH
Confidence 4578899999999999999999999988764321 12233333333333 334 36788888887764
No 125
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.43 E-value=0.023 Score=60.31 Aligned_cols=152 Identities=15% Similarity=0.236 Sum_probs=97.0
Q ss_pred chhhccHhhHHHHHHHhC-CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHH--
Q 000194 592 DDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGC-- 668 (1880)
Q Consensus 592 d~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~-- 668 (1880)
+||..-|++++.|+..++ +.+..+|..+++++|-|+...| +..+.+......- .. .......-..
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-----~~~k~~~~~~~~~-----~~--~~~~~~~~~~~l 70 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDP-----YKHKSIQKSLDSK-----SS--ENSNDESTDISL 70 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-----HHHhcccccCCcc-----cc--ccccccchhhHH
Confidence 466767888999988876 4579999999999999998775 3333211111100 00 0000001111
Q ss_pred HHHhCcccccCch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhH
Q 000194 669 LIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKR 747 (1880)
Q Consensus 669 l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r 747 (1880)
+..........|. .-.+..|+..++|++ ..+-...++.++-.+....|....||+++++|.++..++... ...|
T Consensus 71 ~~~~~~~~~ee~y~~vvi~~L~~iL~D~s----Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~-~~~~ 145 (160)
T PF11865_consen 71 PMMGISPSSEEYYPTVVINALMRILRDPS----LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP-DSLR 145 (160)
T ss_pred hhccCCCchHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC-HHHH
Confidence 1111111222333 346778888888863 344445667777777777888889999999999999999654 3788
Q ss_pred HHHHHHHHHHHhh
Q 000194 748 EVAVSTLGQVVQS 760 (1880)
Q Consensus 748 ~~Al~~Lg~l~~~ 760 (1880)
+.-+.-|+.++..
T Consensus 146 e~~~~qL~~lv~i 158 (160)
T PF11865_consen 146 EFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887653
No 126
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=1.7 Score=54.77 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=77.2
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHh--cCCChhHH
Q 000194 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV--ADADVTVR 578 (1880)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~--~d~~~~vR 578 (1880)
.++.+ +++.++.++-+||+-+..-...++.. + ...+++..+-..+....- .|..-..|
T Consensus 317 ~l~mD-vLrvLss~dldvr~Ktldi~ldLvss-------------r------Nvediv~~Lkke~~kT~~~e~d~~~~yR 376 (948)
T KOG1058|consen 317 GLIMD-VLRVLSSPDLDVRSKTLDIALDLVSS-------------R------NVEDIVQFLKKEVMKTHNEESDDNGKYR 376 (948)
T ss_pred HHHHH-HHHHcCcccccHHHHHHHHHHhhhhh-------------c------cHHHHHHHHHHHHHhccccccccchHHH
Confidence 33433 35788888999997654433333311 1 122333322222222211 22334568
Q ss_pred HHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHH----HHHHHhcCC
Q 000194 579 HSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQ----LLTYLEQSS 653 (1880)
Q Consensus 579 ~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~----~l~~l~~~~ 653 (1880)
...++.+..| ..| +..+ ..+++.++..+.|.+..--..++..+....+.+| .||..++. .+..++.
T Consensus 377 qlLiktih~cav~F-p~~a-atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p-----~Lr~~ii~~l~~~~~~irS-- 447 (948)
T KOG1058|consen 377 QLLIKTIHACAVKF-PEVA-ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP-----NLRASIIEKLLETFPQIRS-- 447 (948)
T ss_pred HHHHHHHHHHhhcC-hHHH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc-----hHHHHHHHHHHHhhhhhcc--
Confidence 8787777533 233 2222 3578999999999988766667777777666664 45543333 2333332
Q ss_pred CChHhHHHHHHHHHHHHHhC
Q 000194 654 ADNKCREESAKLLGCLIRNC 673 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~ 673 (1880)
++.-+-|+|.+|.-++..
T Consensus 448 --~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 448 --SKICRGALWILGEYCEGL 465 (948)
T ss_pred --cccchhHHHHHHHHHhhh
Confidence 334446778877766543
No 127
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=5.6 Score=51.61 Aligned_cols=159 Identities=12% Similarity=0.180 Sum_probs=124.1
Q ss_pred CCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHH
Q 000194 250 RNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHI 328 (1880)
Q Consensus 250 ~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~L 328 (1880)
+++.|....+.+..+.++++..++--.+.+...++...+.. +..++..-.++..+||.++.|-.++- -|++..+|.|
T Consensus 477 ~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L 554 (982)
T KOG2022|consen 477 DPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLL 554 (982)
T ss_pred CchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHH
Confidence 33348888999999999998766555555555555444322 22477788899999999998866542 3889999999
Q ss_pred HHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC--CchHHHHHHHHHHHhCC-CchHHHHHHH
Q 000194 329 LTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIARAMGP-VMEPHVRGLL 405 (1880)
Q Consensus 329 l~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~--~~~a~~~l~~la~~~g~-~~~~~l~~ll 405 (1880)
+..|.+.+.-..+...+..+++....++.||.+.++....+.+...+.+. +..++.|+|.+..+..+ ...+|+..++
T Consensus 555 ~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~li 634 (982)
T KOG2022|consen 555 FQGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLI 634 (982)
T ss_pred HHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHH
Confidence 99998877777888889999999999999999999999999886543332 46789999999998875 4567888888
Q ss_pred HHHHh
Q 000194 406 DIMFS 410 (1880)
Q Consensus 406 ~~l~~ 410 (1880)
.++++
T Consensus 635 n~il~ 639 (982)
T KOG2022|consen 635 NPILS 639 (982)
T ss_pred HHHHH
Confidence 88774
No 128
>PLN03077 Protein ECB2; Provisional
Probab=96.33 E-value=7.4 Score=54.51 Aligned_cols=462 Identities=13% Similarity=0.085 Sum_probs=228.0
Q ss_pred CCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch--hhhhhcHHH
Q 000194 1286 IDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE--LDVQLKESW 1363 (1880)
Q Consensus 1286 i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--~~~~~~~~~ 1363 (1880)
+.+..+..++.+.+....|.-..+.-.... . .....+...|+..|.+.|+.|.+..++...... ...+.....
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g----~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTG----F-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhC----C-ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 445556666666666555543333222111 1 123467789999999999999999998854321 011122234
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcCC
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMGE 1442 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~~ 1442 (1880)
|-+.|++++|++.|++-....-.|+. ......+..+.++|+++...+........ ..+. ..+......+..+.|+
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~--~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDE--ITIASVLSACACLGDLDVGVKLHELAERKGLISY--VVVANALIEMYSKCKC 439 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCc--eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCC
Confidence 88999999999999875544333432 24567788888899887665544322110 0111 1222344567888999
Q ss_pred hhhHHHHHhhcCCCCcchhhccccccc-cCCCCCchHHHHHHHHHHhcCh--hhhHHHHHHHHHHhHhhhhHHHHHHhhc
Q 000194 1443 WDQMAEYVSRLDDGDESKLRGLGNTAA-NGDGSSNGTFFRAVLLVRRGKV--LESYERAYSNMVRVQQLSELEEVIDYCT 1519 (1880)
Q Consensus 1443 Wd~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~f~~a~~~i~~~~~--~esy~ray~~l~~lq~L~ELeE~i~~~~ 1519 (1880)
++...+..+.+...+...|..+...+. .+.....-.+|+.+. .+.. .-.|........++-.+.+-.++..+..
T Consensus 440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~---~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML---LTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH---hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 999988888776543222221111110 000000001122211 1111 1123332233333333444444433221
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 000194 1520 LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYD 1599 (1880)
Q Consensus 1520 ~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~ 1599 (1880)
.. +-.........+.+.+.+ ..+++.-..++.- + ..|..+|--++..+-++|+.+.|...+.++....
T Consensus 517 ~~-g~~~~~~~~naLi~~y~k-----~G~~~~A~~~f~~---~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 517 RT-GIGFDGFLPNALLDLYVR-----CGRMNYAWNQFNS---H---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred Hh-CCCccceechHHHHHHHH-----cCCHHHHHHHHHh---c---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 10 000000001123333322 1233333333221 1 3568899999999999999999999998876432
Q ss_pred CCCCcccccCCCChHHHHH-HHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHH
Q 000194 1600 PETSHENVRYHGPPQVMYA-YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKL 1678 (1880)
Q Consensus 1600 ~~~~~~~~~~~~~~~v~~~-~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l 1678 (1880)
. .| ..+.+- .+.-.-+.| ...+|.+.++.+..+....++ .+.-..+..+|.+.
T Consensus 585 ~--~P--------d~~T~~~ll~a~~~~g---~v~ea~~~f~~M~~~~gi~P~-------------~~~y~~lv~~l~r~ 638 (857)
T PLN03077 585 V--NP--------DEVTFISLLCACSRSG---MVTQGLEYFHSMEEKYSITPN-------------LKHYACVVDLLGRA 638 (857)
T ss_pred C--CC--------CcccHHHHHHHHhhcC---hHHHHHHHHHHHHHHhCCCCc-------------hHHHHHHHHHHHhC
Confidence 1 11 122222 223333445 467899999887754332111 00111122333333
Q ss_pred hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccc
Q 000194 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAH 1758 (1880)
Q Consensus 1679 g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~ 1758 (1880)
|+ .+++.+.+++. ...| ...+|..+-..|.. . + ..+....+.+..+ .+.+
T Consensus 639 G~-------------~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~----~---~----~~e~~e~~a~~l~---~l~p- 688 (857)
T PLN03077 639 GK-------------LTEAYNFINKM-PITP-DPAVWGALLNACRI----H---R----HVELGELAAQHIF---ELDP- 688 (857)
T ss_pred CC-------------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH----c---C----ChHHHHHHHHHHH---hhCC-
Confidence 33 45666666654 2334 34567666554421 1 1 1122233333222 2321
Q ss_pred cCCCcchHHhHHHHHHHHHhcCCcHHHHHH---H-HhcccCCChhhHHHHHHHHH---H-hccCCC-hhHHHHHHHHHHH
Q 000194 1759 AKGVDDSLQDILRLLTLWFNHGATEEVQIA---L-QKGFAHVNINTWLVVLPQII---A-RIHSNN-RAVRELIQSLLVR 1829 (1880)
Q Consensus 1759 ~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~---~-~~~~~~ip~~~wl~~ipQLi---a-Ri~~~~-~~v~~~l~~lL~~ 1829 (1880)
. ....-.-|.+++...|..+++.+. | ++++...|-+-|+++=-..= + --.||. ..+...+..|..+
T Consensus 689 ----~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 763 (857)
T PLN03077 689 ----N-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEK 763 (857)
T ss_pred ----C-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 1 112233455677788887765543 3 35788888888886532211 1 112332 4455666666666
Q ss_pred HHh
Q 000194 1830 IGQ 1832 (1880)
Q Consensus 1830 i~~ 1832 (1880)
+.+
T Consensus 764 ~~~ 766 (857)
T PLN03077 764 MKA 766 (857)
T ss_pred HHh
Confidence 654
No 129
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.33 E-value=2.7 Score=57.16 Aligned_cols=477 Identities=12% Similarity=0.080 Sum_probs=230.9
Q ss_pred HHHHHHHhhhCCC--CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHH
Q 000194 1270 LLNLAEFMEHDEK--PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGI 1347 (1880)
Q Consensus 1270 ll~l~efm~~~~~--~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi 1347 (1880)
.+.+.+.|...+. +-...+..+..++.+.+.+..|....+.-.... ..+ ...+...|+..|.+.|+.|.+..+
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g----~~~-~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG----FEP-DQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----CCc-chHHHHHHHHHHhcCCCHHHHHHH
Confidence 3444555654331 112345566677777777665544433221111 122 245778999999999999999999
Q ss_pred HHHHhch--hhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-CCChH
Q 000194 1348 LTYAQKE--LDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-PAEPA 1424 (1880)
Q Consensus 1348 ~~~~~~~--~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-~~~~~ 1424 (1880)
+...... .........|-+.|++++|++.|++-.+....++ ......+++++..+|..+.-...-..... ...++
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~--~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE--PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC--hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 8753221 0112222347889999999999998765544443 23456778888888876543332111000 00000
Q ss_pred HHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHH---HHHHh-cCh--hhhHHHH
Q 000194 1425 ARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAV---LLVRR-GKV--LESYERA 1498 (1880)
Q Consensus 1425 ~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~---~~i~~-~~~--~esy~ra 1498 (1880)
..+......+.-+.|+++...+..+.++..+...+..++..+.. .+.+-+|+ ..+.+ +-. .-.|...
T Consensus 259 --~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~-----~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 259 --TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL-----HGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred --ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 01112335677788999998888887765432222212111110 01111221 11111 111 1234333
Q ss_pred HHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 000194 1499 YSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASL 1578 (1880)
Q Consensus 1499 y~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~l 1578 (1880)
.....++..+.+-+++....... +-+........+.+...+ ..+++.=..++. -+. ..+..+|--++.-
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~---~m~--~~d~~t~n~lI~~ 400 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSK-----WGRMEDARNVFD---RMP--RKNLISWNALIAG 400 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHH-----CCCHHHHHHHHH---hCC--CCCeeeHHHHHHH
Confidence 33334444444444444322110 000000011112222211 122332222221 111 2367789999999
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHH-HHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000194 1579 CRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMY-AYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1880)
Q Consensus 1579 aRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~-~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~ 1657 (1880)
+-++|+.+.|...+.++..... . +..+.+ ..+.-+-+.| ...+|.+.++.+..+....++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~--~--------Pd~~T~~~ll~a~~~~g---~~~~a~~~f~~m~~~~g~~p~------ 461 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGV--A--------PNHVTFLAVLSACRYSG---LSEQGWEIFQSMSENHRIKPR------ 461 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--C--------CCHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhcCCCCC------
Confidence 9999999999999988765321 1 123332 2333333445 467899888887654321111
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCc
Q 000194 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSV 1737 (1880)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~ 1737 (1880)
...-......|.+.| ..+++.+.|++.- ..| ....|..+...|.. .++
T Consensus 462 -------~~~y~~li~~l~r~G-------------~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~-------~g~--- 509 (697)
T PLN03081 462 -------AMHYACMIELLGREG-------------LLDEAYAMIRRAP-FKP-TVNMWAALLTACRI-------HKN--- 509 (697)
T ss_pred -------ccchHhHHHHHHhcC-------------CHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH-------cCC---
Confidence 011111223333333 3556666665532 222 34456665544432 110
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHH----HhcccCCChhhHHHHHHHHH---H
Q 000194 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIAL----QKGFAHVNINTWLVVLPQII---A 1810 (1880)
Q Consensus 1738 ~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~----~~~~~~ip~~~wl~~ipQLi---a 1810 (1880)
+..|...+-+.+.+. +.+ ...-.-|..++...|..+++.+.+ ++++...|-+.|+.+--+.- +
T Consensus 510 ----~~~a~~~~~~l~~~~-----p~~-~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 579 (697)
T PLN03081 510 ----LELGRLAAEKLYGMG-----PEK-LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFS 579 (697)
T ss_pred ----cHHHHHHHHHHhCCC-----CCC-CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEcc
Confidence 112222222323332 111 111234566777777776654433 35677778888876532211 1
Q ss_pred -hccCCC-hhHHHHHHHHHHHHHh
Q 000194 1811 -RIHSNN-RAVRELIQSLLVRIGQ 1832 (1880)
Q Consensus 1811 -Ri~~~~-~~v~~~l~~lL~~i~~ 1832 (1880)
--.||. ..+.+.+..++.++.+
T Consensus 580 ~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 580 GDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHH
Confidence 112442 3445556666665544
No 130
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.32 E-value=0.055 Score=59.05 Aligned_cols=109 Identities=24% Similarity=0.319 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcc
Q 000194 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFD 592 (1880)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~fd 592 (1880)
|+.||.-++.+++.+..+-+ .+++..++.+.. .+.|+++.||..++..|+. ...+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---------------------~~ve~~~~~l~~-~L~D~~~~VR~~al~~Ls~Li~~d~i 58 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---------------------NLVEPYLPNLYK-CLRDEDPLVRKTALLVLSHLILEDMI 58 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---------------------HHHHhHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHcCce
Confidence 57899999999998886432 446666665554 5789999999999888741 00000
Q ss_pred hhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcC-CcccccHHHHHHHHHHHHHHhc
Q 000194 593 DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK-NPAYVLPALRRHLIQLLTYLEQ 651 (1880)
Q Consensus 593 ~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~~l~~l~~ 651 (1880)
. ....++..+..++.|++++||..|..++..+... +|..+. ..+.+++..+..
T Consensus 59 k--~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~----~~~~e~i~~l~~ 112 (178)
T PF12717_consen 59 K--VKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIY----NNFPELISSLNN 112 (178)
T ss_pred e--ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHH----HHHHHHHHHHhC
Confidence 0 1123446666788999999999999999999887 665543 344555555543
No 131
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.32 E-value=0.58 Score=58.29 Aligned_cols=229 Identities=11% Similarity=0.101 Sum_probs=141.4
Q ss_pred CCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHh----cCCCCHHHHHHHH
Q 000194 720 GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREVL 795 (1880)
Q Consensus 720 g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L----~~~~~~~vr~~~l 795 (1880)
.+++.|+..+++..++..+....+ ..-+-..+++-+++...+..+.|+. +.+++.|..++ +++.++..--=.+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~--~~il~~L~~il~~v~kNPsnP~FnHylF 93 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIA--VEILQHLTAILKEVSKNPSNPRFNHYLF 93 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHhCCCCcchhhhHH
Confidence 467899999999999999975432 4455667888888888888788884 45666666555 6666777666666
Q ss_pred HHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhH
Q 000194 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYH 875 (1880)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~ 875 (1880)
.++|.+-- +..+ .. +..-.-+...+++.+..+|+.+- .+..
T Consensus 94 Esi~~lir---~~~~------------------~~-----------------~~~v~~~E~~L~P~f~~ILq~dV-~EF~ 134 (435)
T PF03378_consen 94 ESIGALIR---FVCE------------------AD-----------------PEAVSQFEEALFPPFQEILQQDV-QEFI 134 (435)
T ss_dssp HHHHHHHH---HS-G------------------GG-----------------HH---HHHHHHHHHHHHHHHTT--TTTH
T ss_pred HHHHHHHH---hccC------------------CC-----------------hhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 66666521 1000 00 00001234667777888886553 3567
Q ss_pred HHHHHHHHHHHHHhC-CCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH--HhHHHHHHHHHHhhcCC
Q 000194 876 QKVVGSLMFIFKSMG-LGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR--KYLQELFSLISELWSSF 952 (1880)
Q Consensus 876 ~~~~~al~~i~~~~~-~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~--~y~~~i~~~i~~~~~~~ 952 (1880)
+-|+|-+..+++... ....+...+++|.++.-.--.....-..+...|..++..-...+. +++..|+.+........
T Consensus 135 PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 135 PYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp HHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 889998888887765 344567777788776422111111123333445555544444443 67788888887766643
Q ss_pred CCCcccccccchhHHHHHHHHHHHhhh-hhhccchhhHHHHHHhccc
Q 000194 953 SLPATNRTYRGLPVLHLVQQLCLALND-EFRTHLPVILPCCIQVLSD 998 (1880)
Q Consensus 953 ~~~~~~~~~~~~~~l~~i~~l~~~l~~-~f~~yl~~l~p~ll~~l~~ 998 (1880)
.. ....+.+++.+...++. .+.||++.++..++..|++
T Consensus 215 ~~--------D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 215 AN--------DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp TC--------HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHH
T ss_pred Cc--------chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 31 12678999999999987 4899999999999999976
No 132
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.20 E-value=0.13 Score=67.72 Aligned_cols=194 Identities=15% Similarity=0.124 Sum_probs=134.2
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc
Q 000194 109 SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF 188 (1880)
Q Consensus 109 ~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l 188 (1880)
.++...+..-+- +.+-.-+..|.+.+.......+.....-...++...+....-|.+-..-.-|...|..||...+..+
T Consensus 252 ~ki~~~l~t~~~-s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 252 SKITKNLETEML-SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhcChHHHHhhh-ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 344333333332 4466777888887777666533222222233444444444456665666668889999999999999
Q ss_pred hhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 000194 189 NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELL 268 (1880)
Q Consensus 189 ~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll 268 (1880)
.+|...++|.++..+.|....+|+++..++...+.. .-+..+.+.+..+++..+ ...+......++..+
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns----------~~l~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS----------TPLSKMSEAILEALKGKN-PQIKGECLLLLDRKL 399 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHH
Confidence 999999999999999999999999999988876652 124566777777887765 455666677888887
Q ss_pred Hcchh--hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh
Q 000194 269 RNTGE--FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 269 ~~~~~--~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~ 314 (1880)
+..+. .-.+-...+++.++...++++..||.++..+++.+...-++
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 75442 12234566777777777888899999988888877654443
No 133
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.19 E-value=0.29 Score=53.47 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=82.8
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh
Q 000194 124 DREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1880)
Q Consensus 124 d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l 203 (1880)
|+.++..+..++|-|+.. -+.+++..++.....|.+ .++..|..|+.++..|...-.--+. ++++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 467888999999999875 566778888888888864 4567788889999988876443333 34556677888
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCC
Q 000194 204 RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRN 251 (1880)
Q Consensus 204 ~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~ 251 (1880)
.|+++.||..|...+..+... +. +..+...+++++..+.+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~---~~----~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK---RN----PNIIYNNFPELISSLNNC 113 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh---cc----chHHHHHHHHHHHHHhCc
Confidence 999999999999988776542 11 234566677777666654
No 134
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.14 Score=63.87 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=104.2
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000194 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1880)
Q Consensus 194 ~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1880)
..=+.|-..++|.+|.+|....-++.-. .. ....+...+.+++.+.+ +.+ .++|.+|..++|.++...++
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alA--y~----GTgnnkair~lLh~aVs---D~n-DDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALA--YV----GTGNNKAIRRLLHVAVS---DVN-DDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHH--Hh----ccCchhhHHHhhccccc---ccc-hHHHHHHHHHheeeEecChh
Confidence 4445556778899999998887665422 11 12234455666665443 444 58999999999988764433
Q ss_pred hhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 000194 274 FMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAG 350 (1880)
Q Consensus 274 ~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~ 350 (1880)
.|..++..+ ++-|+.||..+.-++|..|+-.+. ...+..|-....++. .|..|+.+++.|..
T Consensus 589 --------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 589 --------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred --------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 333333333 578999999999999987765443 223333333333332 48999999999887
Q ss_pred hchhhhhhhhhHHHHHHHHhhcCCCC
Q 000194 351 ALDGELFHYLPTITSHLREAIAPRRG 376 (1880)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~l~~~~~ 376 (1880)
...+...|-...|-+.+...+.+++.
T Consensus 654 Q~t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 654 QQTEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred hcccccCchHHHHHHHHHHHhhhhhh
Confidence 77777778888888888777766553
No 135
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.84 Score=58.16 Aligned_cols=208 Identities=16% Similarity=0.203 Sum_probs=121.2
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhh----cCccchh-chHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAEN----ASTVFNV-HVAEFVDAIWVALRDPT-LAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~----~p~~l~~-~l~~i~~~i~~~l~D~~-~~VR~aA~~al~~~~~~i~ 226 (1880)
-++.+++.|+.+.++.....| +.+|++. .-..+.. -+..++|++...|++.+ ..|.--|+.|+-.+++++.
T Consensus 168 k~kkLL~gL~~~~Des~Qlea---l~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEA---LTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChHHHHHH---HHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 477788888877666655444 4444443 2223332 46788999999998765 8899999999998888765
Q ss_pred hhchhhHHH--HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000194 227 KRETRWRVQ--WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSL 304 (1880)
Q Consensus 227 ~r~~~~~~~--~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~ 304 (1880)
+......+ .++.+++.++ .-.-.++.+-++.+|.-+-+-.+..+.. ..-+..++.+++==+-.+|+.|+.+
T Consensus 245 -~S~a~vV~~~aIPvl~~kL~----~IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDFFSi~aQR~Alai 317 (1051)
T KOG0168|consen 245 -RSSAIVVDEHAIPVLLEKLL----TIEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAI 317 (1051)
T ss_pred -chhheeecccchHHHHHhhh----hhhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211111 2233333222 1111355666666666555522211110 0012234444544456778888877
Q ss_pred hHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCCCCc--chHHHHHHHHHhhchh---hhhhh-hhHHHHHHHHhhc
Q 000194 305 LPRIAHFL-RDRFVTNYLKICMNHILTVLRIPAER--DSGFIALGEMAGALDG---ELFHY-LPTITSHLREAIA 372 (1880)
Q Consensus 305 i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~~~r--~~a~~alg~la~~v~~---~~~p~-l~~i~~~l~~~l~ 372 (1880)
....|... +++| +|+-+.+|.|.+.|...+.+ ..+..|+..++...-. .+... -.++++.+.+-+.
T Consensus 318 aaN~Cksi~sd~f--~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 318 AANCCKSIRSDEF--HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHhcCCCccc--hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 77777543 4566 58899999999999876544 4677777777765432 22222 1456666666653
No 136
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.05 E-value=4.5 Score=51.00 Aligned_cols=183 Identities=18% Similarity=0.179 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHH--HHHhHhhc
Q 000194 22 SLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGAL--RAIDELID 98 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i--~ai~~Li~ 98 (1880)
+..-+..||+..+... ....+- +++++ .-...+.|...+..+.+.+.-+-+.+...+|.-.. .-++.|-.
T Consensus 3 ~~~r~~~If~k~Q~s~agh~~kl---~~k~~----em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q 75 (892)
T KOG2025|consen 3 SLERMQLIFNKIQQSDAGHYSKL---LAKVM----EMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQ 75 (892)
T ss_pred HHHHHHHHHHHHHhhhcchHHHH---HHHHH----HhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhc
Confidence 3455677777775442 221211 22222 12233334444444444444455666666665322 22444444
Q ss_pred cccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHH
Q 000194 99 VALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILK 178 (1880)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~ 178 (1880)
.+.++ ..+..+.-||.+-.. ++|..|+...++.+.++....+..-.+....+.+..+.-+. ++....|..|+.+|+
T Consensus 76 ~d~e~--DlV~~~f~hlLRg~E-skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~-Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 76 LDKEE--DLVAGTFYHLLRGTE-SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK-DREPNVRIQAVLALS 151 (892)
T ss_pred cCchh--hHHHHHHHHHHhccc-CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHH
Confidence 43222 134444455555554 67899999999999998874343444455555555554443 466688999999998
Q ss_pred HHHhhcCccchhchHHHHHHHHHHh-cCCchhHHHHHHHHHH
Q 000194 179 EMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALR 219 (1880)
Q Consensus 179 ~la~~~p~~l~~~l~~i~~~i~~~l-~D~~~~VR~aA~~al~ 219 (1880)
.+-+...+-=.+-++.+. ..+ .||+++||.+|.-.+.
T Consensus 152 rlQ~d~~dee~~v~n~l~----~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 152 RLQGDPKDEECPVVNLLK----DLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHhcCCCCCcccHHHHHH----HHHhcCCcHHHHHHHHHhhc
Confidence 887432221122222222 223 5999999999986553
No 137
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.03 E-value=0.0094 Score=43.54 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 195 FVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 195 i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
++|.++..+.||++.||.+|+.+++.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999998765
No 138
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=6.1 Score=48.97 Aligned_cols=206 Identities=13% Similarity=0.184 Sum_probs=122.6
Q ss_pred cchhchHHHHHHHHHHhcCCc------------hhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCCh
Q 000194 187 VFNVHVAEFVDAIWVALRDPT------------LAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV 254 (1880)
Q Consensus 187 ~l~~~l~~i~~~i~~~l~D~~------------~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~ 254 (1880)
.|.||.-+++..+.....=|. -.-|....+.+..+.-++.+.+ .++.++-.+.. .+.+|
T Consensus 333 ~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e------~lk~~~~~l~e---~~~~W 403 (559)
T KOG2081|consen 333 IFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDE------CLKQMYIRLKE---NNASW 403 (559)
T ss_pred HhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHcc---CCCch
Confidence 578999999999888776333 2458888888888777665332 23333333322 34469
Q ss_pred hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC
Q 000194 255 HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI 334 (1880)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~ 334 (1880)
+..+|++..+..++......-.+.+.++++.++.. . ....+|.+++..+|.+.+|-..+ +.++..++.++...+..
T Consensus 404 e~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl-p-~Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~~~~~~~ 479 (559)
T KOG2081|consen 404 EEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL-P-EQAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYIRQGLQL 479 (559)
T ss_pred HHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC-c-cchhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHhhh
Confidence 99999999999988754433334445555555431 1 22339999999999998875432 23556677776665543
Q ss_pred CCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCch--HHHHHHHHHHHhCC-CchHHHHHHHHH
Q 000194 335 PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE--ALACVGNIARAMGP-VMEPHVRGLLDI 407 (1880)
Q Consensus 335 ~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~--a~~~l~~la~~~g~-~~~~~l~~ll~~ 407 (1880)
..--.+|..+...++.++-..+.+.++.+...+........+. +. .++.++.+....+. +..+.++++.+.
T Consensus 480 ~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~--e~a~l~~~~s~i~~~lp~~k~~~~~~el~~~ 553 (559)
T KOG2081|consen 480 KRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINE--EAACLLQGISLIISNLPAHKAKIALEELCEP 553 (559)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCHhhhhHHHHHHhhH
Confidence 2233456666666777766666667776666554433222111 22 33444444444443 344555554443
No 139
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.00 E-value=0.51 Score=57.78 Aligned_cols=213 Identities=27% Similarity=0.319 Sum_probs=133.0
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
+.+..++++++..+|..|+...+.+- ..+.++.+.. ...|+++.||..+..+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~---------------------------~~~av~~l~~-~l~d~~~~vr~~a~~a 97 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG---------------------------SEEAVPLLRE-LLSDEDPRVRDAAADA 97 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc---------------------------hHHHHHHHHH-HhcCCCHHHHHHHHHH
Confidence 44557778888999998887643321 1222332322 4689999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhC-CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCC----------
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS---------- 653 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~---------- 653 (1880)
|+. +. .++.++.+...+. |++..||..+...|+.+..... +.| ++..+++..
T Consensus 98 Lg~---~~----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--~~~--------l~~~l~~~~~~~a~~~~~~ 160 (335)
T COG1413 98 LGE---LG----DPEAVPPLVELLENDENEGVRAAAARALGKLGDERA--LDP--------LLEALQDEDSGSAAAALDA 160 (335)
T ss_pred HHc---cC----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--hHH--------HHHHhccchhhhhhhhccc
Confidence 962 11 2355667777676 8999999999999998877552 222 222222220
Q ss_pred CChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHH
Q 000194 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL 733 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~ 733 (1880)
.....|..+...++.+.. +.....+...+.+. ...++..+..+++.+.... ..+.+.
T Consensus 161 ~~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~-----~~~vr~~Aa~aL~~~~~~~--------~~~~~~ 217 (335)
T COG1413 161 ALLDVRAAAAEALGELGD----------PEAIPLLIELLEDE-----DADVRRAAASALGQLGSEN--------VEAADL 217 (335)
T ss_pred hHHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhCc-----hHHHHHHHHHHHHHhhcch--------hhHHHH
Confidence 111345555555544422 22344556666664 5578888888887765432 566778
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 734 l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
+...+.|. +..+|..++.+||.+ | ..+-...+...+..+ ++.++.......+
T Consensus 218 l~~~~~~~-~~~vr~~~~~~l~~~----~--------~~~~~~~l~~~l~~~-~~~~~~~~~~~~~ 269 (335)
T COG1413 218 LVKALSDE-SLEVRKAALLALGEI----G--------DEEAVDALAKALEDE-DVILALLAAAALG 269 (335)
T ss_pred HHHHhcCC-CHHHHHHHHHHhccc----C--------cchhHHHHHHHHhcc-chHHHHHHHHHhc
Confidence 88888876 678999999999873 1 134566677777654 4566655444443
No 140
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=1.2 Score=55.86 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=107.3
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
+-.++.+.++-.|..-+.+.+..+... + -..++.+|+.++++|++.+||.+++.+|+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GT-----------------g------nnkair~lLh~aVsD~nDDVrRaAVialG 580 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGT-----------------G------NNKAIRRLLHVAVSDVNDDVRRAAVIALG 580 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhcc-----------------C------chhhHHHhhcccccccchHHHHHHHHHhe
Confidence 335566778889987776665444211 0 13456678889999999999999999986
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCC-CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 587 GNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 587 ~~~~fd~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
= -.|. .|+.++.....|.+. ++.||-.|.-.||-.+.-.+. +.-+.+|..+.++ ...-+|+-|+-.
T Consensus 581 F-Vl~~----dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D-~~~fVRQgAlIa 647 (929)
T KOG2062|consen 581 F-VLFR----DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSD-PVDFVRQGALIA 647 (929)
T ss_pred e-eEec----ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcC-hHHHHHHHHHHH
Confidence 1 1221 245566666666654 789999999999977665542 1233556666665 566788888888
Q ss_pred HHHHHHhCcccccCchHHHHHHHHHHhccC
Q 000194 666 LGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1880)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1880)
++.|.-.+.+..-|-+..|-+.+.+.+.+.
T Consensus 648 ~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 648 LAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred HHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 888877777777788888888888888875
No 141
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.86 E-value=0.58 Score=53.73 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=113.2
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcc--h-hhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH
Q 000194 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFD--D-FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1880)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd--~-~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1880)
+++|+...-...||.++..++.+++....|. . .......++.+...++++++.||..|+.++..++...+. ...+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en--~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN--QEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh--HHHH
Confidence 4556655556778999999888886332221 1 112234578888999999999999999999988765432 2233
Q ss_pred HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh--CcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
...+.+.+..+...+-+...+..++++|..+.-. ....+..| ++.+++.+..+ +..++..++..+..|+
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~----i~~ll~LL~~G-----~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANY----IPDLLSLLSSG-----SEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhh----HHHHHHHHHcC-----ChHHHHHHHHHHHHhc
Confidence 4444444444433323556667788888887422 12233344 44455556554 5567777777777776
Q ss_pred HhcCCchhhhH--HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCc
Q 000194 717 RVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGY 763 (1880)
Q Consensus 717 ~~~g~~~~~~~--~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~ 763 (1880)
..- .+.+.+ .+..+.++..+....+.+.-..++.-+..+..+.+.
T Consensus 163 ~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 163 ENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred cCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 531 111111 245666666666544455556667666776555543
No 142
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=2 Score=51.98 Aligned_cols=146 Identities=13% Similarity=0.053 Sum_probs=97.6
Q ss_pred cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHH
Q 000194 79 ESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMAL 158 (1880)
Q Consensus 79 ~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~ 158 (1880)
.+..++.|.+.+..+..+..-..-........+...+.+=.. +.+..++..|+.+||+++.......-.+....+..++
T Consensus 227 ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~-dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii 305 (533)
T KOG2032|consen 227 TSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKAT-DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAII 305 (533)
T ss_pred chhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHH
Confidence 345567788888877777543211111222322222222211 3456889999999999987522233334455566666
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHhhcC-ccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 159 DWLRGDRVEYRRFAAVLILKEMAENAS-TVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 159 ~~l~~~~~~~~R~aA~~~l~~la~~~p-~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
-.|-++.++..-+.|+..|..+.+... ..+.+|+-.+...+.+...|.++.+|-+|..+++.+..+-
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 666566667788889999888887744 4778888888888888889999999999999998877653
No 143
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.80 E-value=0.022 Score=57.57 Aligned_cols=112 Identities=21% Similarity=0.114 Sum_probs=78.2
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1880)
..++.+...+.|.+..+|..++.+++.++...|......++.-..+.+..+..+ ++++.+..++++|+.++...+....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 357777888889899999999999999999876544333331222333333334 5789999999999999877653332
Q ss_pred CchH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 679 PYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 679 py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
.+.. .+++.++..+.+. +..++..++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhh
Confidence 2232 3677788888764 6778888888877664
No 144
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.79 E-value=13 Score=50.98 Aligned_cols=409 Identities=12% Similarity=0.039 Sum_probs=203.5
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhc-h-h-h--hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHh
Q 000194 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQK-E-L-D--VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRM 1398 (1880)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~-~-~--~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m 1398 (1880)
.+..+.....|..-.|+.+.+..++..... . . . ....+..+.+.|+|++|++.|++.+...++. .+...++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 356778899999999999999988875442 1 1 1 2334456899999999999999988754443 35567888
Q ss_pred HHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhc-CCCC-cchh-hccccccccCCCCC
Q 000194 1399 RCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRL-DDGD-ESKL-RGLGNTAANGDGSS 1475 (1880)
Q Consensus 1399 ~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~-~~~~-~~~~-~~l~~~~~~~~~~~ 1475 (1880)
.++...|+++......+..-.. .++... ....+.+....|+.+.-....... ...+ .... ..++..+...
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~--~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~---- 163 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN--LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN---- 163 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----
Confidence 9999999998877666654221 122111 223355677788877655544432 1111 1111 0111111000
Q ss_pred chHHHHHHHHHHhcChhhhHHH-----HHHHHHHhH----------------hhhhHHHHHHh-hcCCCCCCchhhHHHH
Q 000194 1476 NGTFFRAVLLVRRGKVLESYER-----AYSNMVRVQ----------------QLSELEEVIDY-CTLPVGNPVAEGRRAI 1533 (1880)
Q Consensus 1476 ~~~f~~a~~~i~~~~~~esy~r-----ay~~l~~lq----------------~L~ELeE~i~~-~~~~~~~~~~~~~~~~ 1533 (1880)
+..-.|+..+.+....-.+.+ ....++++. .+.+++..++. ...|.. . ..
T Consensus 164 -~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~----~---~~ 235 (765)
T PRK10049 164 -RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA----T---AD 235 (765)
T ss_pred -CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc----c---hH
Confidence 000011111111000000000 011111111 12233333321 111110 0 11
Q ss_pred HHHHHHHHHhh--ccCCHHHHHHHHHHHHhhcCC---cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccccc
Q 000194 1534 IRNMWTERIQG--TKRNVEVWQALLAVRALVLPP---TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR 1608 (1880)
Q Consensus 1534 l~~~W~~Rl~~--~~~~~~~w~~iL~~R~~vl~~---~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~ 1608 (1880)
....+.+|+.. ...+++. -+-..+.++-.. ......|+ +.+....|+++.|...+.++...++.. .
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~e--A~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~----~- 306 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKD--VISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETI----A- 306 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHH--HHHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCC----C-
Confidence 22222222221 1112221 111223332211 12245554 889999999999999999887654321 0
Q ss_pred CCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCC
Q 000194 1609 YHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPG 1688 (1880)
Q Consensus 1609 ~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~ 1688 (1880)
..........+..+-.+| +..+|+..++.+......... .+..............++.+|.-+...
T Consensus 307 -~~~~~~~~~L~~a~~~~g---~~~eA~~~l~~~~~~~P~~~~-------~~~~~~~~p~~~~~~a~~~~a~~l~~~--- 372 (765)
T PRK10049 307 -DLSDEELADLFYSLLESE---NYPGALTVTAHTINNSPPFLR-------LYGSPTSIPNDDWLQGQSLLSQVAKYS--- 372 (765)
T ss_pred -CCChHHHHHHHHHHHhcc---cHHHHHHHHHHHhhcCCceEe-------ecCCCCCCCCchHHHHHHHHHHHHHHc---
Confidence 001122222222333455 468899998887643211000 000000001112334555666665543
Q ss_pred CCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHh
Q 000194 1689 LDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQD 1768 (1880)
Q Consensus 1689 ~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~ 1768 (1880)
...++.+..|.++....|....+|...|..... ++ ....|++.|-+++... +.+.. -
T Consensus 373 ---g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~-------~g-------~~~~A~~~l~~al~l~-----Pd~~~-l 429 (765)
T PRK10049 373 ---NDLPQAEMRARELAYNAPGNQGLRIDYASVLQA-------RG-------WPRAAENELKKAEVLE-----PRNIN-L 429 (765)
T ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cC-------CHHHHHHHHHHHHhhC-----CCChH-H
Confidence 357889999999999999999999888875332 11 2357777777777764 23222 2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000194 1769 ILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1880)
Q Consensus 1769 ~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1880)
..-.-...+..+...+....+++.+..-
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 2222224455555555444444444433
No 145
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.76 E-value=0.15 Score=66.99 Aligned_cols=188 Identities=15% Similarity=0.157 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHH
Q 000194 105 ASKVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMA 181 (1880)
Q Consensus 105 ~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la 181 (1880)
.+.+.+|++++..+... ..|++...+|.-|||||.-. .++|.++.++-.+..+....++..|--++.+++.+|
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i----Sa~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI----SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 45678898887776532 35799999999999999875 788999999999988876778888999999999999
Q ss_pred hhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000194 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1880)
Q Consensus 182 ~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al 261 (1880)
-.-|+.+.|+ -+.+...|+|+++.||+.|...+..++- . .-.. ++..+.+....+.+++ .+++--|=
T Consensus 990 v~fpnlie~~----T~~Ly~rL~D~~~~vRkta~lvlshLIL--n-dmiK-----VKGql~eMA~cl~D~~-~~IsdlAk 1056 (1251)
T KOG0414|consen 990 VRFPNLIEPW----TEHLYRRLRDESPSVRKTALLVLSHLIL--N-DMIK-----VKGQLSEMALCLEDPN-AEISDLAK 1056 (1251)
T ss_pred hhcccccchh----hHHHHHHhcCccHHHHHHHHHHHHHHHH--h-hhhH-----hcccHHHHHHHhcCCc-HHHHHHHH
Confidence 9989887754 4567789999999999999988876531 1 0000 1223334444555553 23222222
Q ss_pred HHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC
Q 000194 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP 335 (1880)
Q Consensus 262 ~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~ 335 (1880)
.-+.+| .++...+=...-+.|++|..- ..-+.-+..+|.+|+..+++.
T Consensus 1057 ~FF~El-----------------------s~k~n~iynlLPdil~~Ls~~---~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1057 SFFKEL-----------------------SSKGNTIYNLLPDILSRLSNG---NLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred HHHHHh-----------------------hhcccchhhhchHHHHhhccC---cccchhhHHHHHHHHHHhccc
Confidence 233333 333322333333444444432 111223489999999999865
No 146
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.74 E-value=0.028 Score=56.86 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=76.7
Q ss_pred CChHhHHHHHHHHHHHHHhCcccccCchH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHH
Q 000194 654 ADNKCREESAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELM 731 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~ 731 (1880)
+++..|..++.+|+.++...+.....++. .+++.+++.+.++ ++.++..++.+++.++...+.....+. ..++
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 93 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-----DEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-----CHHHHHHHHHHHHHHccCcHHHHHHHHHCCCh
Confidence 46788999999999999876555545455 6778888888864 788999999999999876543333333 3479
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 000194 732 PLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1880)
Q Consensus 732 p~l~~~l~d~~~~~~r~~Al~~Lg~l~~ 759 (1880)
+.+++.+.+. +...|+.|+++|+.+++
T Consensus 94 ~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 94 PKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 9999999876 57799999999998763
No 147
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.67 E-value=0.36 Score=60.74 Aligned_cols=262 Identities=17% Similarity=0.186 Sum_probs=125.0
Q ss_pred chhHHHHHHhhccc--ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhH
Q 000194 479 SAPVQLALQTLARF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~--~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1880)
.+.+.+|-+.+..| .|. .+.+-.-++.+.+.+|++..||+.|...+..+....+ +
T Consensus 36 ~k~K~Laaq~I~kffk~FP--~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~---------------------~ 92 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFP--DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP---------------------E 92 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-G--GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-----------------------T
T ss_pred HHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH---------------------H
Confidence 44678899999988 453 2334444566788899999999999998887765332 1
Q ss_pred HHHHHHHHHHHHHhcCCCh---hHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC---CCCHhHHHHHHHHHHhhhcCC
Q 000194 557 LIEELVEKLLIAAVADADV---TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN---DEDFDVREYAISVAGRLSEKN 630 (1880)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~---~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~---D~~~~VR~~a~~~l~~l~~~~ 630 (1880)
.+..|..-|.+...+|... .|+.+.++-|. .|+ ...+..+|..+. ..+..||+.+++.|..-....
T Consensus 93 ~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~----~d~----k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 93 HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLK----QDP----KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp -HHHHHHHHHHHTT---HHHHHHHHHHHHHHHH----H-H----HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHh----cCc----HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence 2333333333333344322 23344444442 222 234666665443 345679999999775433333
Q ss_pred ccc-cc--HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc----ccCchHHHHHHHHHHhccCCC-CCCCh
Q 000194 631 PAY-VL--PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL----IRPYIAPIHKALVARLLEGTG-INANN 702 (1880)
Q Consensus 631 p~~-v~--p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~----~~py~~~il~~ll~~l~~~~~-~~~~~ 702 (1880)
+.. +. .....++...+..+..+ .. ..=..++-.+.+..+-+ -.+-...+++.+.....-+.. ...++
T Consensus 165 ~~~~~~p~~E~e~~i~~~ikkvL~D---VT--aeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~ 239 (556)
T PF05918_consen 165 KPELLTPQKEMEEFIVDEIKKVLQD---VT--AEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDP 239 (556)
T ss_dssp -TTTS---HHHHHHHHHHHHHHCTT-------HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSH
T ss_pred cHHHhhchHHHHHHHHHHHHHHHHh---cc--HHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCH
Confidence 433 33 23445555544443332 11 12234555666655431 122345566666644421110 11245
Q ss_pred hHHHHHHHHHHHHHHhc--CCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHH
Q 000194 703 GIISGVLVTVGDLARVG--GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780 (1880)
Q Consensus 703 ~v~~~~~~~l~~La~~~--g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~ 780 (1880)
.....++.|+..-.... |..-.+|+.-+...++..+.+- ..+.|..-++.|..++.++|.. . ..++++.+.+
T Consensus 240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l-~e~~kl~lLk~lAE~s~~~~~~-d----~~~~L~~i~~ 313 (556)
T PF05918_consen 240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL-PEDRKLDLLKLLAELSPFCGAQ-D----ARQLLPSIFQ 313 (556)
T ss_dssp HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT------HHHHHHHHHHHHHTT-----T----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC-ChHHHHHHHHHHHHHcCCCCcc-c----HHHHHHHHHH
Confidence 55566666665433221 2222333333333333333332 3356677788899988887743 1 2455666655
Q ss_pred Hh
Q 000194 781 ML 782 (1880)
Q Consensus 781 ~L 782 (1880)
.|
T Consensus 314 ~L 315 (556)
T PF05918_consen 314 LL 315 (556)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 148
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.63 E-value=10 Score=48.48 Aligned_cols=256 Identities=16% Similarity=0.156 Sum_probs=123.1
Q ss_pred CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHH
Q 000194 612 DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVAR 691 (1880)
Q Consensus 612 ~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~ 691 (1880)
..++|.++++++..+++..-.. ....|..+...+..-..+ ++.. .-+.+|..|-++..+. ..+...+.+.+..-
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~~-~~~~R~~fF~~I~~~~~~-~d~~---~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~w 115 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDSS-SGLMRAEFFRDISDPSND-DDFD---LRLEALIALTDNGRDI-DFFEYEIGPFLLSW 115 (464)
T ss_pred CHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHHhcCCCc-hhHH---HHHHHHHHHHcCCcCc-hhcccchHHHHHHH
Confidence 4679999999999999887432 345676555544322121 2223 3344555555544333 33333444443333
Q ss_pred hccC-------------C--CC-C------CChhHHHHHHHHHHHHHHhcCCch-hhhHHhHHHHHHHHHhcCCchhhHH
Q 000194 692 LLEG-------------T--GI-N------ANNGIISGVLVTVGDLARVGGFGM-RQYISELMPLIVEALLDGAAVTKRE 748 (1880)
Q Consensus 692 l~~~-------------~--~~-~------~~~~v~~~~~~~l~~La~~~g~~~-~~~~~~l~p~l~~~l~d~~~~~~r~ 748 (1880)
+..- . .. . .+.......+.-+..+.+.....+ ...+..++..++......++.+.=.
T Consensus 116 l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~ 195 (464)
T PF11864_consen 116 LEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIE 195 (464)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 3210 0 00 0 011112233333333444333333 2455566666666544333333335
Q ss_pred HHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCC
Q 000194 749 VAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASD 828 (1880)
Q Consensus 749 ~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~ 828 (1880)
.++..|..++.+.. -|-..++.++..|..+.... .....+-+++..+-
T Consensus 196 ~~L~vldaii~y~~---iP~~sl~~~i~vLCsi~~~~---~l~~~~w~~m~nL~-------------------------- 243 (464)
T PF11864_consen 196 ACLSVLDAIITYGD---IPSESLSPCIEVLCSIVNSV---SLCKPSWRTMRNLL-------------------------- 243 (464)
T ss_pred HHHHHHHHHHHcCc---CChHHHHHHHHHHhhHhccc---ccchhHHHHHHHHH--------------------------
Confidence 66777777666432 24444555666665553322 22222333222210
Q ss_pred CCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhc--CCChhhhH---HHHHHHHHHHHHHhCCCCCCC--cch--
Q 000194 829 SGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILR--DPSLASYH---QKVVGSLMFIFKSMGLGCVPY--LPK-- 899 (1880)
Q Consensus 829 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~--d~s~~~~~---~~~~~al~~i~~~~~~~~~~~--l~~-- 899 (1880)
..+....++..|..+|. |+.....- ..++..+..++-..|..-.|- +..
T Consensus 244 ----------------------~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~ 301 (464)
T PF11864_consen 244 ----------------------KSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS 301 (464)
T ss_pred ----------------------cCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence 01234567789999994 33322211 122322333222233343443 344
Q ss_pred hhHHHHHHHhcCCcchhHHHHHHHHHHH
Q 000194 900 VLPDLFHTVRTCDDYLKDYITWKLGTLV 927 (1880)
Q Consensus 900 iip~ll~~l~~~~~~~~~~~~~~l~~lv 927 (1880)
++|.+..+++..++.+--.++..+..++
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 9999999999776655445555555565
No 149
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=10 Score=48.26 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=91.0
Q ss_pred HhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc-ccCc----hH-HHHH
Q 000194 613 FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPY----IA-PIHK 686 (1880)
Q Consensus 613 ~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py----~~-~il~ 686 (1880)
.++|..---.+.+++...|......+|+.+...+..... ++...-|.|+..+..+.+..+.. +.-. .+ .++.
T Consensus 413 ~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e--~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~ 490 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKE--ESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLF 490 (980)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhccccccccccCccccHHHHHH
Confidence 367887777888888888887777777766555443222 34566678999999998765321 1100 11 1222
Q ss_pred HHHHHhccCCC-CCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcC-----CchhhHHHHHHHHHHHHhh
Q 000194 687 ALVARLLEGTG-INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG-----AAVTKREVAVSTLGQVVQS 760 (1880)
Q Consensus 687 ~ll~~l~~~~~-~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~-----~~~~~r~~Al~~Lg~l~~~ 760 (1880)
.+++.+-.... .-.++.|..-.++.+-.-. .|-.+-.+-+|.++.++-|. .+..+|..|-+-+.+++..
T Consensus 491 ~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~-----kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKl 565 (980)
T KOG2021|consen 491 LNELLLMTSQVLAHDHELVQLLFMELIVRYN-----KFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKL 565 (980)
T ss_pred HHHHHHHHcccccCCchHHHHHHHHHHHHHH-----HHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHH
Confidence 22222221100 0124444443344433322 23333345677777776542 2456888888888888888
Q ss_pred cCcccccCCcchHHHHHHHHHh
Q 000194 761 TGYVITPYNEYPQLLGLLLKML 782 (1880)
Q Consensus 761 ~~~~i~p~~~~p~ll~~Ll~~L 782 (1880)
....+.||.+ +++..+-..|
T Consensus 566 Lkkqlvpfie--~iln~iqdlL 585 (980)
T KOG2021|consen 566 LKKQLVPFIE--EILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHH--HHHHHHHHHH
Confidence 7666667653 5555555555
No 150
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=11 Score=48.43 Aligned_cols=346 Identities=14% Similarity=0.124 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHHhhhChHHHHH-HHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc
Q 000194 43 ASLALRKHIEEQARDLGGEAFSR-FMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV 121 (1880)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~~-~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~ 121 (1880)
+.+-|.+++--. ..+|.|.+ ---+++=.+.++.++.|.-.|..--++|..+-.... + .-. -.+-|.+=+.
T Consensus 40 c~~~lskllyll---~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ise-d-vii---vtsslmkD~t- 110 (865)
T KOG1078|consen 40 CRHILSKLLYLL---NQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISE-D-VII---VTSSLMKDMT- 110 (865)
T ss_pred HHHHHHHHHHHH---hcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccch-h-hhh---hhHHHHhhcc-
Confidence 555566655222 33445532 223344457788999999999989999998865531 2 111 1122222222
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH
Q 000194 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~ 201 (1880)
.....++-.|-++|-++... +... -++..++.++ -+++...+-+|+.----+....+.......+.+.+.
T Consensus 111 ~~~d~yr~~AiR~L~~I~d~-~m~~--~iery~kqai----vd~~~avSsaalvss~hll~~~~~~vkrw~neiqea--- 180 (865)
T KOG1078|consen 111 GKEDLYRAAAIRALCSIIDG-TMLQ--AIERYMKQAI----VDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEA--- 180 (865)
T ss_pred CCCcchhHHHHHHHHhhcCc-chhH--HHHHHHHhHe----eccccccchHHHHHHhhhhcccHHHHHHHHHhhhhc---
Confidence 22334455555555555432 2111 2333344443 345545555544322222223333444444444432
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHh-hccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH
Q 000194 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD-GLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR 280 (1880)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~ 280 (1880)
..+-+.-|+.-|.--|.+ +.+.+. -.+.+++..... ++.+ .++-+..+....+...+- .+...
T Consensus 181 -~~s~~~m~QyHalglLyq----irk~dr----la~sklv~~~~~~~~~~------~~A~~~lir~~~~~l~~~-~~~~s 244 (865)
T KOG1078|consen 181 -VNSDNIMVQYHALGLLYQ----IRKNDR----LAVSKLVQKFTRGSLKS------PLAVCMLIRIASELLKEN-QQADS 244 (865)
T ss_pred -cCcHHHHHHHHHHHHHHH----HHhhhH----HHHHHHHHHHccccccc------hhHHHHHHHHHHHHhhhc-ccchh
Confidence 222333343333322222 111111 011222222211 1221 233333332222211111 22223
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFH 358 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p 358 (1880)
.+...+-+++.|+..+|...+..++-.+....+..+. +.+..|...+..++ .|-+|...|..+|+..+..+
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v-- 317 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV-- 317 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--
Confidence 3445555667888999988888888777665555443 36666777777665 58899999999998876532
Q ss_pred hhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHH--hcCCCHH----HHHHHHHHHHhCCCCh
Q 000194 359 YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF--SAGLSTT----LVDALEQITVSIPSLL 432 (1880)
Q Consensus 359 ~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~--~~~ls~~----l~~~l~~i~~~~p~l~ 432 (1880)
...+.=.+.|.....+ .-+.-++..+.+...+ .-+..++.++- -+.++++ ..++...++..+|...
T Consensus 318 ---~~cN~elE~lItd~Nr--sIat~AITtLLKTG~e---~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~ 389 (865)
T KOG1078|consen 318 ---TVCNLDLESLITDSNR--SIATLAITTLLKTGTE---SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH 389 (865)
T ss_pred ---cccchhHHhhhccccc--chhHHHHHHHHHhcch---hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH
Confidence 1111111122112111 2334445555444222 22334443332 2344444 3567777777777544
Q ss_pred HHHHHH
Q 000194 433 PTIQDR 438 (1880)
Q Consensus 433 ~~i~~~ 438 (1880)
..+.+-
T Consensus 390 ~~~m~F 395 (865)
T KOG1078|consen 390 TVMMNF 395 (865)
T ss_pred HHHHHH
Confidence 443333
No 151
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.54 E-value=1 Score=51.83 Aligned_cols=216 Identities=11% Similarity=0.150 Sum_probs=125.8
Q ss_pred HHhhhc-CCChhhhhhHHHHHhHhhccccCcchhHHHHH--HHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHH
Q 000194 74 ISGLLE-SNDAAENLGALRAIDELIDVALGENASKVSKF--SNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEV 150 (1880)
Q Consensus 74 i~~l~~-s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~--~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v 150 (1880)
+..+++ +.++..+..++.++.....+. .+...++.+ .+.+..+++ .+++.+...|.+++..|+... ....-+
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~-~p~~~vr~~AL~aL~Nls~~~--en~~~I 91 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLN-DPNPSVREKALNALNNLSVND--ENQEQI 91 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcC-CCChHHHHHHHHHHHhcCCCh--hhHHHH
Confidence 334554 467777777888888876553 233344444 457778886 678999999999999987753 233445
Q ss_pred HHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc
Q 000194 151 EFQVKMALDWLRGD-RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE 229 (1880)
Q Consensus 151 ~~~~~~~~~~l~~~-~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1880)
+..+..+++.+.+. -+.....+|+.+|..|+-. ......+...++.++..|...+..+|.-+..+|..+.. +.+
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---np~ 166 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE---NPD 166 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc---CHH
Confidence 66677777776543 3456678999998888633 21122333444455556666677788777776655432 111
Q ss_pred hhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---------hh----hHH---HHHHHHHHHHHHhhc
Q 000194 230 TRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---------EF----MMS---RYREVAEIVLRYLEH 292 (1880)
Q Consensus 230 ~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---------~~----~~~---~~~~i~~~ll~~~~~ 292 (1880)
...+.+ .+.+.....-+....+.+....++..+..+-++-. +| +.. ......+.+.....|
T Consensus 167 --~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h 244 (254)
T PF04826_consen 167 --MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANH 244 (254)
T ss_pred --HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcC
Confidence 111221 23333444334443345666677777666644211 11 111 122244566677788
Q ss_pred chhHHHHHH
Q 000194 293 RDRLVRLSI 301 (1880)
Q Consensus 293 ~~~~Vr~~~ 301 (1880)
+++.||..|
T Consensus 245 ~d~ev~~~v 253 (254)
T PF04826_consen 245 PDPEVKEQV 253 (254)
T ss_pred CCHHHhhhc
Confidence 999998765
No 152
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.46 E-value=5.7 Score=49.81 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=52.8
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
.++....+-.+++|.++|+++.|..++.++....|+ +......+..+++.|+ ..+|....++-+
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----------~~~~~~La~~~~~~g~---~~~A~~~~~~~l 388 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----------AYDYAWLADALDRLHK---PEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 366888999999999999999999999998876542 4555789999999996 578888777644
No 153
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.46 E-value=13 Score=48.74 Aligned_cols=173 Identities=11% Similarity=0.069 Sum_probs=104.2
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
...++.|.-.++..+..|-. ++.+++.+++.+...+.++++--.-=+. +.+...++-....++..+
T Consensus 33 ~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~--------~yak~~P~~~lLavNti~ 98 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLE--------RYAKLKPELALLAVNTIQ 98 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HHhccCHHHHHHHHHHHH
Confidence 33456666677777777644 5566666666666566666554333222 233344455666777788
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH-
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC- 324 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~- 324 (1880)
.-+.+++ ...|+.|+-.++.+= +..-.+.++..+.++++|+++.||+.|.-++..+-..+++. ++..
T Consensus 99 kDl~d~N-~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l-----~~~~g 166 (757)
T COG5096 99 KDLQDPN-EEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL-----YHELG 166 (757)
T ss_pred hhccCCC-HHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh-----hhccc
Confidence 8888886 678888777765441 12233445666778889999999999999999887777653 3333
Q ss_pred HHHHHHhh-cCC--CCcchHHHHHHHHHhhchhhhhhhhhHHHHHH
Q 000194 325 MNHILTVL-RIP--AERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1880)
Q Consensus 325 ~~~Ll~~L-~~~--~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1880)
.-.++..| ... .....|+.++..+-.. ...+|...+...+
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i 209 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRI 209 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHh
Confidence 33333333 332 2345566666554322 3345555444433
No 154
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.40 E-value=6.1 Score=53.00 Aligned_cols=294 Identities=11% Similarity=-0.006 Sum_probs=161.9
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----~~~~~~~~ 1364 (1880)
.++.+....|.+..|+..++...... ++.......|..+|.+.|+.+.+.-.++.+.. ..+ .......+
T Consensus 81 ~l~~~~l~~g~~~~A~~~l~~~l~~~------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l 154 (656)
T PRK15174 81 RWVISPLASSQPDAVLQVVNKLLAVN------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTL 154 (656)
T ss_pred HHhhhHhhcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44555567888999998888776532 34456677889999999999999887775432 111 11233458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWD 1444 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd 1444 (1880)
...|++++|...|++.....+++. +..... ..+...|+|+.-....+...... +..........+.+.+..|+++
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P~~~---~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVPPRG---DMIATC-LSFLNKSRLPEDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCCCCH---HHHHHH-HHHHHcCCHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHH
Confidence 899999999999997765544432 223333 34788899987776665532211 1011112234467788899998
Q ss_pred hHHHHHhhcCC-CCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC
Q 000194 1445 QMAEYVSRLDD-GDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVG 1523 (1880)
Q Consensus 1445 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~ 1523 (1880)
.-.......-. .+. .....+.-+......++..+.. -+.+..++.+++.. |+.
T Consensus 230 eA~~~~~~al~~~p~---------------~~~~~~~Lg~~l~~~G~~~eA~---------~~A~~~~~~Al~l~--P~~ 283 (656)
T PRK15174 230 EAIQTGESALARGLD---------------GAALRRSLGLAYYQSGRSREAK---------LQAAEHWRHALQFN--SDN 283 (656)
T ss_pred HHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCchhhH---------HHHHHHHHHHHhhC--CCC
Confidence 87665543311 100 0000011112222223221111 12233344444321 211
Q ss_pred CCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 000194 1524 NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPET 1602 (1880)
Q Consensus 1524 ~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~ 1602 (1880)
......+- + +.....+++.-... .++.+ +.| ++...+..++.+..+.|+++.|...+.++...+|.
T Consensus 284 ----~~a~~~lg--~---~l~~~g~~~eA~~~--l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~- 350 (656)
T PRK15174 284 ----VRIVTLYA--D---ALIRTGQNEKAIPL--LQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV- 350 (656)
T ss_pred ----HHHHHHHH--H---HHHHCCCHHHHHHH--HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-
Confidence 11111110 1 01111222211111 12222 233 45677888899999999999999999888765442
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1603 SHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1603 ~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
.+.+..-.+..+...|+ ..+|+..++..+..
T Consensus 351 ---------~~~~~~~~a~al~~~G~---~deA~~~l~~al~~ 381 (656)
T PRK15174 351 ---------TSKWNRYAAAALLQAGK---TSEAESVFEHYIQA 381 (656)
T ss_pred ---------chHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh
Confidence 23344445677778884 67899998887653
No 155
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.31 E-value=1.1 Score=53.47 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
+..+++.|+.-++..+++.||..++++|+-+.-+|..++. +.++.++.+++..+.+||..|++++.++...++..+...
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 5577888888889999999999999999743344444432 467777777766689999999999999888776544332
Q ss_pred HH--------HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhcc
Q 000194 638 LR--------RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLE 694 (1880)
Q Consensus 638 l~--------~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~ 694 (1880)
.. ..+..++...-.+ .+++.+..|+++++.+.-+.. +.+ .+.++..|+-..=+
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~~--i~~-~~~vL~~Lll~yF~ 163 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSGR--ISD-PPKVLSRLLLLYFN 163 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcCC--CCc-HHHHHHHHHHHHcC
Confidence 22 2344555554445 477889999999988875422 111 24555555544433
No 156
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.30 E-value=9.8 Score=46.22 Aligned_cols=320 Identities=18% Similarity=0.237 Sum_probs=171.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1880)
-+=+.|.|++|..+|+..++-.++.. -....+--||..+|+|+.+.+.+..... .++.+-+.+ .-.|.|.=.||+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~p~ep---iFYsNraAcY~~lgd~~~Vied~TkALE-l~P~Y~KAl-~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELCPDEP---IFYSNRAACYESLGDWEKVIEDCTKALE-LNPDYVKAL-LRRASAHEQLGK 198 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCCc---hhhhhHHHHHHHHhhHHHHHHHHHHHhh-cCcHHHHHH-HHHHHHHHhhcc
Confidence 36678899999999999997665521 2345688899999999999877755332 233332221 123445556777
Q ss_pred hhhHH-H-HHhhcCCC---Ccch-h--hcc---cc----ccccCCC---CCchHHHHHHHHHHh----------------
Q 000194 1443 WDQMA-E-YVSRLDDG---DESK-L--RGL---GN----TAANGDG---SSNGTFFRAVLLVRR---------------- 1488 (1880)
Q Consensus 1443 Wd~~~-~-~~~~~~~~---~~~~-~--~~l---~~----~~~~~~~---~~~~~f~~a~~~i~~---------------- 1488 (1880)
.+.-- + .+..+.++ .++. . +.| +. ....... -+...|...+..+-.
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 76522 2 11111111 0000 0 000 00 0000000 011222222221111
Q ss_pred ----------cChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHH-----HHHhhcc-CCHHHH
Q 000194 1489 ----------GKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWT-----ERIQGTK-RNVEVW 1552 (1880)
Q Consensus 1489 ----------~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~-----~Rl~~~~-~~~~~w 1552 (1880)
....|+|..+|+.+..-.-..|.+.-. |.+ ....+.+-.... .-|.|-. ..-+..
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~--------n~~-d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSV--------NEI-DAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccc--------ccc-chhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 014567888888775544444433321 111 011122211111 1122211 111223
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchH
Q 000194 1553 QALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKR 1632 (1880)
Q Consensus 1553 ~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~ 1632 (1880)
+.++.+.... ...+|+.+.+.-...+-+...+.+.++..++|+ .|.|.+.++....-.+ +-
T Consensus 350 ~~~I~l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~----------n~dvYyHRgQm~flL~---q~ 410 (606)
T KOG0547|consen 350 DAAIKLDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE----------NPDVYYHRGQMRFLLQ---QY 410 (606)
T ss_pred HHHHhcCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC----------CCchhHhHHHHHHHHH---HH
Confidence 3333332222 334999999999999999999999999888764 4667777776666555 35
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000194 1633 KEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1880)
Q Consensus 1633 ~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1880)
.+|+...++-+. +. .....+-+++-++.|.. ..+++.++.|+++.+-.|+..
T Consensus 411 e~A~aDF~Kai~-L~-------------------pe~~~~~iQl~~a~Yr~--------~k~~~~m~~Fee~kkkFP~~~ 462 (606)
T KOG0547|consen 411 EEAIADFQKAIS-LD-------------------PENAYAYIQLCCALYRQ--------HKIAESMKTFEEAKKKFPNCP 462 (606)
T ss_pred HHHHHHHHHHhh-cC-------------------hhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhCCCCc
Confidence 677776665332 11 11223433333444442 247889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000194 1713 KAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1880)
Q Consensus 1713 k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~ 1757 (1880)
..+..+|..-.. .+-.-.|++.|=++|.+.+
T Consensus 463 Evy~~fAeiLtD--------------qqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 463 EVYNLFAEILTD--------------QQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hHHHHHHHHHhh--------------HHhHHHHHHHHHHHHhhcc
Confidence 998877754221 1234478999999998864
No 157
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.26 E-value=4.8 Score=51.00 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=75.4
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCch
Q 000194 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1880)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~ 147 (1880)
++-.+.+++|+...|...|..||-+|-.++.- ++..+.|.++.|.+++. ++|...+..+-++|-.|.... ..
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~----~~~~v~kvaDvL~QlL~-tdd~~E~~~v~~sL~~ll~~d---~k 129 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD----NPEHVSKVADVLVQLLQ-TDDPVELDAVKNSLMSLLKQD---PK 129 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh----HHHHHhHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcC---cH
Confidence 34456678899999999999888888777633 34578899999999997 667788888888888776641 12
Q ss_pred hHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cch--hchHH-HHHHHHHHhcC
Q 000194 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFN--VHVAE-FVDAIWVALRD 205 (1880)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~-~l~--~~l~~-i~~~i~~~l~D 205 (1880)
..+...+..+..- ...++..|.-++.+|+.=....+. .+. .-+.. |++.|-..|.|
T Consensus 130 ~tL~~lf~~i~~~--~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D 189 (556)
T PF05918_consen 130 GTLTGLFSQIESS--KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhc--ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh
Confidence 2222333333210 134566788888777654444443 444 23444 34566677777
No 158
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.22 E-value=8.1 Score=48.38 Aligned_cols=213 Identities=14% Similarity=0.080 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+....+.|+++.|...+.++...++. ........+.++..+|+ ..+|+..++.++..-..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEGDF----------AEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGD 173 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc----------hHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999988765331 24556677788888884 67899988887643110
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
......+..+..+|.-..+. ...++..+.|.++++.+|+...+|..+|.....
T Consensus 174 -----------------~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 226 (389)
T PRK11788 174 -----------------SLRVEIAHFYCELAQQALAR------GDLDAARALLKKALAADPQCVRASILLGDLALA---- 226 (389)
T ss_pred -----------------cchHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----
Confidence 01112344455566654433 457899999999999999988888888766443
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHH
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQI 1808 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQL 1808 (1880)
.+ -...|++.|-+++..+ +.+......++..++...|...+....+++.+..-|....+..+-++
T Consensus 227 ---~g-------~~~~A~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~ 291 (389)
T PRK11788 227 ---QG-------DYAAAIEALERVEEQD-----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQL 291 (389)
T ss_pred ---CC-------CHHHHHHHHHHHHHHC-----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 11 2335777777776553 23333445677788889898888777777766555543322333333
Q ss_pred HHhccCCChhHHHHHHHHHHHHHhhCchhhHHH
Q 000194 1809 IARIHSNNRAVRELIQSLLVRIGQSHPQALMYP 1841 (1880)
Q Consensus 1809 iaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~ 1841 (1880)
..+.+..+ --..++.+..+.+|...-|-
T Consensus 292 ~~~~g~~~-----~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 292 LEEQEGPE-----AAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHhCCHH-----HHHHHHHHHHHhCcCHHHHH
Confidence 33333222 23345555556789876544
No 159
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.05 E-value=0.21 Score=53.20 Aligned_cols=89 Identities=16% Similarity=0.195 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHh-CcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH---HH
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL---AR 717 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L---a~ 717 (1880)
|.-++..+... +. --+-.|...+-+++++ .++.+.|.++.++..+...+... ++++...++.++..| ..
T Consensus 40 Lpif~dGL~Et-~~-Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-----~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 40 LPIFFDGLRET-EH-PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-----DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHhhhhcc-Cc-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHhhh
Confidence 33344444443 22 2345677888888888 78889999999999999999975 889999999999999 67
Q ss_pred hcCCchhhhHHhHHHHHHHH
Q 000194 718 VGGFGMRQYISELMPLIVEA 737 (1880)
Q Consensus 718 ~~g~~~~~~~~~l~p~l~~~ 737 (1880)
..|+.+.||+.+++|.+--.
T Consensus 113 ~vG~aLvPyyrqLLp~ln~f 132 (183)
T PF10274_consen 113 MVGEALVPYYRQLLPVLNLF 132 (183)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 78999999999999998743
No 160
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=1.8 Score=56.55 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=55.8
Q ss_pred CcHHHHHHHHHHHHhhccc----c-cccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccc-----cchhHH
Q 000194 1041 APVDIRRAAIETLTRLIPR----V-QVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFT-----IFIPSI 1110 (1880)
Q Consensus 1041 ~~~~vr~~ai~~l~~l~~~----~-~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~-----~fip~i 1110 (1880)
....+|..+++.+....+- - -+-|.+....|+++..+...++-+-..|+.++..+...-|.... .++|.+
T Consensus 815 e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l 894 (1014)
T KOG4524|consen 815 ESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWL 894 (1014)
T ss_pred hhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4667889998888765543 1 25677778888899999988988899999999988887764322 256766
Q ss_pred HHHHHh
Q 000194 1111 HKLLLK 1116 (1880)
Q Consensus 1111 ~~~l~~ 1116 (1880)
...+..
T Consensus 895 ~~~~~~ 900 (1014)
T KOG4524|consen 895 KHLCQD 900 (1014)
T ss_pred HHHHHH
Confidence 655554
No 161
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.98 E-value=0.049 Score=57.82 Aligned_cols=87 Identities=16% Similarity=0.224 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhcCCC--CcchHHHHHHHHHhh-chhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHH---HHHhCC
Q 000194 322 KICMNHILTVLRIPA--ERDSGFIALGEMAGA-LDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI---ARAMGP 395 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~-v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~l---a~~~g~ 395 (1880)
+..+|.+..-|+..+ -|-.|.+.+.++... .++.+.|.+|+++.-++.+|.+.+.++...++.++..| ...+|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 344555555554322 367888999998888 66678999999999999999877666656788888888 888999
Q ss_pred CchHHHHHHHHHH
Q 000194 396 VMEPHVRGLLDIM 408 (1880)
Q Consensus 396 ~~~~~l~~ll~~l 408 (1880)
++.||..+++|.+
T Consensus 117 aLvPyyrqLLp~l 129 (183)
T PF10274_consen 117 ALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 162
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.97 E-value=3.8 Score=50.57 Aligned_cols=292 Identities=11% Similarity=0.079 Sum_probs=133.8
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---hhhHHH
Q 000194 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---EFMMSR 278 (1880)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---~~~~~~ 278 (1880)
.|..++..|...|+..+..++..-. ..........+++-+...+.++++.+.+..++.+|..|++... -|....
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~---~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~ 185 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGL---AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD 185 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCc---cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc
Confidence 3345677787778777766543211 1111122333444444444443334567777788888887432 111111
Q ss_pred HHHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHHHHHH--HHHHHHHHHhhcC-CCCc--chHHHHHHHHHhh
Q 000194 279 YREVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFVTNYL--KICMNHILTVLRI-PAER--DSGFIALGEMAGA 351 (1880)
Q Consensus 279 ~~~i~~~ll~~~~~~--~~~Vr~~~~~~i~~la~~~~~~f~~~yl--~~~~~~Ll~~L~~-~~~r--~~a~~alg~la~~ 351 (1880)
.+..+...++.. +...+..++-++=.++ |.++ .++ .+ ..+++.+..+++. .++| -.++.++-++...
T Consensus 186 ---~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLS-F~~~-~~~-~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 186 ---GVPTLVKLLSNATLGFQLQYQSIFCIWLLT-FNPH-AAE-VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred ---CHHHHHHHHhhccccHHHHHHHHHHHHHHh-ccHH-HHH-hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 223344333322 2334444443333333 2322 222 11 4677777777764 3444 3566667776654
Q ss_pred chh-h-hhhhhhHHHH----HHHHhhcCCCCCCCchHHHHHHHHHHHhCC------CchHHHHHHHHHHHhcCCCHHHHH
Q 000194 352 LDG-E-LFHYLPTITS----HLREAIAPRRGKPSLEALACVGNIARAMGP------VMEPHVRGLLDIMFSAGLSTTLVD 419 (1880)
Q Consensus 352 v~~-~-~~p~l~~i~~----~l~~~l~~~~~~~~~~a~~~l~~la~~~g~------~~~~~l~~ll~~l~~~~ls~~l~~ 419 (1880)
..+ + -..+.+.++. .+.+.|...+ =..+...+-+..+-+.+.+ .|..|..++...-+.+.-.-....
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk-~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~ 338 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRK-YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK 338 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence 311 0 0112222222 1122222111 0112333333333332222 366677776555444421000011
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-cc--CC
Q 000194 420 ALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NF--KG 496 (1880)
Q Consensus 420 ~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~~--~~ 496 (1880)
-+.+=+..+..-. -.++..+..+|.. .+|+..++.||.=+|+| .+ .|
T Consensus 339 FW~EN~~kf~~~~----~~llk~L~~iL~~--------------------------s~d~~~laVAc~Dige~vr~~P~g 388 (429)
T cd00256 339 FWRENADRLNEKN----YELLKILIHLLET--------------------------SVDPIILAVACHDIGEYVRHYPRG 388 (429)
T ss_pred HHHHHHHHHHhcc----hHHHHHHHHHHhc--------------------------CCCcceeehhhhhHHHHHHHCccH
Confidence 2222111111100 1223333333211 01334567899999998 22 13
Q ss_pred Ccchhh--HHHHHhhhccCCChHHHHHHHHHHHHhhhcc
Q 000194 497 HDLLEF--ARDSVVLYLDDEDKATRKDAALCCCKLVANS 533 (1880)
Q Consensus 497 ~~l~~~--v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~ 533 (1880)
...... .++.+..++.|++++||..|-.|+.+++...
T Consensus 389 r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 389 KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 322221 4567789999999999999999888876543
No 163
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.92 E-value=0.51 Score=50.60 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=101.6
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccccc-HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhC---c
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL-PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC---E 674 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~-p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~---~ 674 (1880)
..+..+...+++.+..-|-.++.+++.+++.++..++ ..-...+..++..++.. +....++.++.++..+.... +
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566677888999999999999999999999854433 54455555566666665 56777888999998888642 2
Q ss_pred ----ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHH
Q 000194 675 ----RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL 738 (1880)
Q Consensus 675 ----~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l 738 (1880)
+...|.++.+++.+++.+.+ ......++.++..+....+..+.||..++-..+...+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~-------~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD-------SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 34578899999999998773 3456678889999999999999999999887777654
No 164
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.83 E-value=23 Score=47.97 Aligned_cols=134 Identities=17% Similarity=0.157 Sum_probs=94.9
Q ss_pred HHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh-hchhhHHHHHH-HHHHHHHhhccCC
Q 000194 174 VLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK-RETRWRVQWYY-RMFEATQDGLGRN 251 (1880)
Q Consensus 174 ~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~-r~~~~~~~~~~-~~l~~~~~~l~~~ 251 (1880)
-.+|.++++..|..+.+++..+++ .+...+...|.+-.++++......-. .+......-.. .+++.+..++.+-
T Consensus 296 ~~fL~elS~~~P~l~~~~l~~lv~----lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv 371 (1251)
T KOG0414|consen 296 GNFLVELSERVPKLMLRQLTLLVD----LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV 371 (1251)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 357788999999999999888887 45566788999988888776543321 12122222222 3677777777776
Q ss_pred CChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh
Q 000194 252 APVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313 (1880)
Q Consensus 252 ~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~ 313 (1880)
+ .-+|.-++.++..|.+...... ....++.+.+.+.+.+++..||+.|+.++..+-...|
T Consensus 372 s-a~vRskVLqv~~~l~~~~s~p~-~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 372 S-AYVRSKVLQVFRRLFQQHSIPL-GSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred c-HHHHHHHHHHHHHHHHccCCCc-cHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 4 5678888888888877433222 2566788888888899999999999998887655444
No 165
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.80 E-value=7.1 Score=48.21 Aligned_cols=330 Identities=12% Similarity=0.103 Sum_probs=154.6
Q ss_pred ChhHHHHHHHHHHHHHHhcCCchhhhHH------hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHH
Q 000194 701 NNGIISGVLVTVGDLARVGGFGMRQYIS------ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1880)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~------~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~l 774 (1880)
..++.+.++.-+++|....+....-|.+ .....++..|... +......|...|..++...... .+-...+.+
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~ 144 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ-DQFIVHMSFSILAKLACFGLAK-MEGSDLDYY 144 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC-chhHHHHHHHHHHHHHhcCccc-cchhHHHHH
Confidence 3445555555555555443321111111 1233344455433 5567788888888887654321 111223446
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccc
Q 000194 775 LGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYY 854 (1880)
Q Consensus 775 l~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 854 (1880)
++.+...+++..+.....-++++++.+-..++|+.....
T Consensus 145 ~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~----------------------------------------- 183 (429)
T cd00256 145 FNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL----------------------------------------- 183 (429)
T ss_pred HHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-----------------------------------------
Confidence 667777776544456666778888887666666531110
Q ss_pred hHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHH-HhCCCCCCCc--chhhHHHHHHHhcCCcc-hhHHHHHHHHHHHHHH
Q 000194 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIFK-SMGLGCVPYL--PKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSIV 930 (1880)
Q Consensus 855 ~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~-~~~~~~~~~l--~~iip~ll~~l~~~~~~-~~~~~~~~l~~lv~~~ 930 (1880)
.-.++.|+.+|+..+. .. +.-.+++..+.. +..+...+.+ ..++|.+.+.++.+... +-..++..+-.++...
T Consensus 184 -~~~v~~L~~~L~~~~~-~~-Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 184 -ADGVPTLVKLLSNATL-GF-QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred -ccCHHHHHHHHhhccc-cH-HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 0023445555543221 00 112222222221 1111122222 46888888888876522 1112222222333211
Q ss_pred -----HH-hHHHh----HHHHHHHHH-HhhcCCCCCcccccccchhHHHHHHHHHHHhhhh------hhccchhhHHHHH
Q 000194 931 -----RQ-HIRKY----LQELFSLIS-ELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE------FRTHLPVILPCCI 993 (1880)
Q Consensus 931 -----~~-~i~~y----~~~i~~~i~-~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~------f~~yl~~l~p~ll 993 (1880)
+. ...-. ++.+++.+. ..|... .+..-+..+...+.+. |..|..++..--+
T Consensus 261 ~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De------------dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L 328 (429)
T cd00256 261 VDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE------------DLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRL 328 (429)
T ss_pred cccchhhhHHHHHHHcChHHHHHHHhcCCCCcH------------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCc
Confidence 00 11111 223333332 234322 3455555555555443 5566655554443
Q ss_pred HhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccc-hhHh--HH
Q 000194 994 QVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTG-HISS--LV 1070 (1880)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~~~~-~~~~--ii 1070 (1880)
+ ++..++++. ....-...+++.-..++-.+..+++.+..+.+-..|+--+|.+++.....- .+.. .-
T Consensus 329 ~-WSp~H~se~---------FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K 398 (429)
T cd00256 329 H-WSPVHKSEK---------FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGK 398 (429)
T ss_pred c-CCCCCCCch---------HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcH
Confidence 1 221111111 011111123333355667777777544333333556677777776532111 1111 11
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 000194 1071 HHLKLVLDGKNDELRKDAVDALCCLAHA 1098 (1880)
Q Consensus 1071 ~~l~~~l~~~~~~l~~~al~~L~~l~~~ 1098 (1880)
..+.+.++.+|+++|..|+.++..|+.+
T Consensus 399 ~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 399 QRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2234677788999999999999877543
No 166
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.65 E-value=0.88 Score=49.03 Aligned_cols=164 Identities=22% Similarity=0.267 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhhhcC-CcccccHHHHHHHHH-----------HHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchH
Q 000194 615 VREYAISVAGRLSEK-NPAYVLPALRRHLIQ-----------LLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA 682 (1880)
Q Consensus 615 VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~-----------~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~ 682 (1880)
||..|+.+|..+++. .|..+..+...++.+ +++.+..+ ++++.|..|+.++..+.+..+ +|+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~D-p~~kvR~aA~~~l~~lL~gsk----~~L~ 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKD-PSPKVRAAAASALAALLEGSK----PFLA 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcC-CchhHHHHHHHHHHHHHHccH----HHHH
Confidence 788899999998888 444444444333322 34555556 788999999999999988753 3322
Q ss_pred HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcC
Q 000194 683 PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 683 ~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~ 762 (1880)
. ..+... ...++.. .-.++|.+ +.++=..++..++.+.+...-...+++|+.+++.+.
T Consensus 77 ~--------Ae~~~~--~~~sFts-lS~tLa~~-----------i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tP 134 (182)
T PF13251_consen 77 Q--------AEESKG--PSGSFTS-LSSTLASM-----------IMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATP 134 (182)
T ss_pred H--------HHhcCC--CCCCccc-HHHHHHHH-----------HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCC
Confidence 1 222110 0111111 01122222 233444566667655555555677899999998876
Q ss_pred cccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCc
Q 000194 763 YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1880)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp 806 (1880)
|.=-+-...++++..+...+.+ .+..+|.+++-++|.+-+..|
T Consensus 135 Y~rL~~~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 135 YHRLPPGLLTEVVTQVRPLLRH-RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred hhhcCHhHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCC
Confidence 5421222345666666666654 467899999999998866543
No 167
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.62 E-value=0.047 Score=39.88 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=25.6
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcC
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1880)
+++.+..+++|++++||.+|+..+|.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 367888999999999999999999998864
No 168
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.38 E-value=16 Score=46.11 Aligned_cols=61 Identities=15% Similarity=-0.017 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH--HhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVK--LLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~--l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
....-++.++-+.|+++.|...+.+ .....| .+......+.++|..|+ ..+|.++.++.+.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----------~~~~~~~La~ll~~~g~---~~~A~~~~~~~l~ 398 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----------DANDLAMAADAFDQAGD---KAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 6677899999999999999999984 444433 24556689999999996 5788888776543
No 169
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.28 E-value=0.23 Score=48.29 Aligned_cols=91 Identities=14% Similarity=0.238 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC------CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 000194 315 RFVTNYLKICMNHILTVLRIPA------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGN 388 (1880)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~~~------~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~ 388 (1880)
+|.++++=.++..+-..+.+.+ +|..++.+++.+....|+.+..+.|+|+..++.+|..+ +.+..++.||..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHH
Confidence 3555565566666666665432 47789999999999999889999999999999999543 445789999999
Q ss_pred HHHHhCC-CchHHHHHHHHH
Q 000194 389 IARAMGP-VMEPHVRGLLDI 407 (1880)
Q Consensus 389 la~~~g~-~~~~~l~~ll~~ 407 (1880)
+...+.+ ++.|.++.++-.
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~ 100 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAA 100 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 9999886 455555544433
No 170
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.28 E-value=13 Score=52.21 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=75.9
Q ss_pred HHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---hh---hhhcH
Q 000194 1288 IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---LD---VQLKE 1361 (1880)
Q Consensus 1288 ~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---~~---~~~~~ 1361 (1880)
+..|.....+||.+..|+..++.-.... ..+ ...++..|+..|.+.|+.|.+..++...... ++ .....
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~G----v~P-dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI 549 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAG----VEA-NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4455555666666666665554322111 011 2345666777777777777666666543210 00 11111
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc--cCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCC-ChHHHHhHHHHHHHHHH
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQ--ASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPA-EPAARLEMAPMAANAAW 1438 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~--~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~-~~~~~~~~~~~~a~aaw 1438 (1880)
..|-+.|++++|++.|+..... .-.|+ ......++.+|.+.|+++......+...... .+. .........+.-
T Consensus 550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD--~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~--~~tynsLI~ay~ 625 (1060)
T PLN03218 550 SACGQSGAVDRAFDVLAEMKAETHPIDPD--HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT--PEVYTIAVNSCS 625 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHH
Confidence 2356667777777776654321 11222 1234456666666777665555544322110 000 011122334555
Q ss_pred HcCChhhHHHHHhhcC
Q 000194 1439 NMGEWDQMAEYVSRLD 1454 (1880)
Q Consensus 1439 ~l~~Wd~~~~~~~~~~ 1454 (1880)
+.|+|+...++...|.
T Consensus 626 k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 626 QKGDWDFALSIYDDMK 641 (1060)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 5666666666555543
No 171
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.25 E-value=0.23 Score=48.66 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHhhcC--C----CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHH
Q 000194 316 FVTNYLKICMNHILTVLRI--P----AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389 (1880)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~--~----~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~l 389 (1880)
|.++++=.++.++-..+.+ . .+|..++.+|+.+....|+.+.++.|+|+..++.++..+ +.+..++.||..+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 5555555566666666544 1 157899999999999888888899999999999999554 4457899999999
Q ss_pred HHHhCC-CchHHHHHHHHHHH
Q 000194 390 ARAMGP-VMEPHVRGLLDIMF 409 (1880)
Q Consensus 390 a~~~g~-~~~~~l~~ll~~l~ 409 (1880)
.+.+++ ++.|+++.++-.++
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHH
Confidence 999986 56777766554443
No 172
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.94 E-value=1.1 Score=48.18 Aligned_cols=135 Identities=19% Similarity=0.155 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcc-hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCC
Q 000194 66 FMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGEN-ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGA 144 (1880)
Q Consensus 66 ~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~-~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~ 144 (1880)
.++.+..++.++++|++...|-.|+..+..+++..+.+. .+....|...|..++...++..+.+.+..++.+|....+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 445567788899999999999999999999987642221 2344566667777776555678899999999999775222
Q ss_pred C---chh----HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh
Q 000194 145 M---TAD----EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1880)
Q Consensus 145 ~---~~~----~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l 203 (1880)
. .-+ .+...++.+++.+++ ......++.+|..+..+-|+.|.|+.+++-..+...+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 112 233344444444432 3456788999999999999999999999887776543
No 173
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.89 E-value=7.4 Score=46.51 Aligned_cols=127 Identities=17% Similarity=0.239 Sum_probs=87.9
Q ss_pred HHHHHHHHhCcccccCc--hHHHHHHHH-HHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhc
Q 000194 664 KLLGCLIRNCERLIRPY--IAPIHKALV-ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD 740 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py--~~~il~~ll-~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d 740 (1880)
.+...+.+.....+.|. +..+++.++ |.++.. ++.++..++.|+|-.+-... ....+.++.+...++.
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~-----~~~vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~ 75 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSS-----DPAVRELALKCLGLCCLLDK----ELAKEHLPLFLQALQK 75 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHh
Confidence 34455555555445553 347776655 777764 77999999999998876554 3445666677777754
Q ss_pred CCchhhHHHHHHHHHHHHhhcCccc-ccCC------cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 741 GAAVTKREVAVSTLGQVVQSTGYVI-TPYN------EYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 741 ~~~~~~r~~Al~~Lg~l~~~~~~~i-~p~~------~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
. +..+|..|++++..++...|..+ .... ....+++.+.+.+.++ +++++..+...+..+
T Consensus 76 ~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 76 D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKL 141 (298)
T ss_pred C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 3 67899999999999998888653 2222 1356888899998776 677887777666554
No 174
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.88 E-value=1.3 Score=49.39 Aligned_cols=137 Identities=11% Similarity=0.069 Sum_probs=90.2
Q ss_pred HHHHHHHhhccC----CHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC
Q 000194 1536 NMWTERIQGTKR----NVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG 1611 (1880)
Q Consensus 1536 ~~W~~Rl~~~~~----~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 1611 (1880)
..|.+|+..-.. .-+.-+-+...+..+-...++.+.|..++.+....|+++.|..++.++..++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---------- 105 (198)
T PRK10370 36 RAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---------- 105 (198)
T ss_pred HHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------
Confidence 456666543221 122233444556555434467999999999999999999999999999988763
Q ss_pred ChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000194 1612 PPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1880)
Q Consensus 1612 ~~~v~~~~ak~lw~~-g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~ 1690 (1880)
.+.+...++..+|.+ |+. ...+|...+++.+..-..+ ..-.-++|.++...|+
T Consensus 106 ~~~~~~~lA~aL~~~~g~~-~~~~A~~~l~~al~~dP~~---------------~~al~~LA~~~~~~g~---------- 159 (198)
T PRK10370 106 NAELYAALATVLYYQAGQH-MTPQTREMIDKALALDANE---------------VTALMLLASDAFMQAD---------- 159 (198)
T ss_pred CHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCCC---------------hhHHHHHHHHHHHcCC----------
Confidence 478888999987655 431 1368999998876532110 1112234444444444
Q ss_pred CCCHHHHHHHHHHHHhhcccc
Q 000194 1691 DESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
.++.+.+|+++.+..|..
T Consensus 160 ---~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 160 ---YAQAIELWQKVLDLNSPR 177 (198)
T ss_pred ---HHHHHHHHHHHHhhCCCC
Confidence 577889999998887753
No 175
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.72 E-value=6.4 Score=47.23 Aligned_cols=195 Identities=17% Similarity=0.166 Sum_probs=110.1
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCC---chhHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcC-
Q 000194 112 SNYMRTVFEVKRDREILVLASKVLGHLARA-GGAM---TADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAENAS- 185 (1880)
Q Consensus 112 ~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~---~~~~v~~~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~~p- 185 (1880)
...|-..++ .-|.+.++.++..++.+... .|+. ..+++....+.++.+|- +......-.-+-.+|++.+.+-+
T Consensus 78 l~~Li~~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l 156 (335)
T PF08569_consen 78 LYLLIRNLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESL 156 (335)
T ss_dssp HHHHHHTGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHH
Confidence 334555554 45899999999999999875 2332 35566655556666653 32222222333345566554411
Q ss_pred -c-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHH
Q 000194 186 -T-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLA 263 (1880)
Q Consensus 186 -~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~ 263 (1880)
. .+. ++.+..++.-+..|+-.|-..|...++.++..-..--...-...|..++.....-+.++ ...++.-|+..
T Consensus 157 ~~~iL~---~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkL 232 (335)
T PF08569_consen 157 AKIILY---SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKL 232 (335)
T ss_dssp HHHHHT---SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHH
T ss_pred HHHHhC---cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHH
Confidence 1 121 22333345667788888844444444443321000001122233555665444445555 48889999999
Q ss_pred HHHHHHc--chhhhHHHHHH--HHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000194 264 VGELLRN--TGEFMMSRYRE--VAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1880)
Q Consensus 264 l~~ll~~--~~~~~~~~~~~--i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~ 311 (1880)
||+++.. ....|..|+.+ -+..++.++++++..||-.+.++.....+.
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999873 34567776654 456777888999999999999999876654
No 176
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=17 Score=46.77 Aligned_cols=203 Identities=22% Similarity=0.284 Sum_probs=116.7
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc-ccHHHHHHHHHHHHHHhcCC--CChHhHHHHHHHHHHHHHhC-
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSS--ADNKCREESAKLLGCLIRNC- 673 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~--~~~~~r~~a~~~L~~l~~~~- 673 (1880)
|.-+..++..+.|....||..++-+|..+++.||.. =+-.+......++..++... ...-+-+.++.+|-.+.+..
T Consensus 165 P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 165 PMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred chhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 345778888899999999999999999999999752 01223333334444444331 12345677888888888753
Q ss_pred --ccccc--CchHHHHHHHHHH-hccCCCCCCChhHHHHHH---HHHHHHHHhcCCchhh-------hHHhHHHHHHHHH
Q 000194 674 --ERLIR--PYIAPIHKALVAR-LLEGTGINANNGIISGVL---VTVGDLARVGGFGMRQ-------YISELMPLIVEAL 738 (1880)
Q Consensus 674 --~~~~~--py~~~il~~ll~~-l~~~~~~~~~~~v~~~~~---~~l~~La~~~g~~~~~-------~~~~l~p~l~~~l 738 (1880)
..+|+ .|++.+...|--. ..++....=++.-..++. ..+..++.-+...-.. .-..++..++..+
T Consensus 245 SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il 324 (970)
T KOG0946|consen 245 SNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTIL 324 (970)
T ss_pred chhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHH
Confidence 23444 4565544332111 122100000122223333 3333343322111111 1224677777776
Q ss_pred hcC-CchhhHHHHHHHHHHHHhhcC-------cccccCCc--chHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000194 739 LDG-AAVTKREVAVSTLGQVVQSTG-------YVITPYNE--YPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1880)
Q Consensus 739 ~d~-~~~~~r~~Al~~Lg~l~~~~~-------~~i~p~~~--~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~ 800 (1880)
..+ -..+++..++-+++.++++.. .+..|+.. .|.++=.++.+.........|.+++.|+-.
T Consensus 325 ~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 325 MHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred cCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 543 345677788888888877642 23456654 466777777777666678999999998754
No 177
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.65 E-value=33 Score=45.28 Aligned_cols=128 Identities=19% Similarity=0.198 Sum_probs=83.5
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHH
Q 000194 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNH 327 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~ 327 (1880)
+.+.++.+.+.|.=.++..+ ..|+.|...|.+++..+ ..++.++++.+--=+-.+|+..|+.. --.++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M--~~G~dmssLf~dViK~~----~trd~ElKrL~ylYl~~yak~~P~~~-----lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQM--SLGEDMSSLFPDVIKNV----ATRDVELKRLLYLYLERYAKLKPELA-----LLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHH--hcCCChHHHHHHHHHHH----HhcCHHHHHHHHHHHHHHhccCHHHH-----HHHHHH
Confidence 55544334344433333333 34555666666655544 47899999988777777777776432 223444
Q ss_pred HHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 328 ILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 328 Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
+..-+..++ -|+.|++++|.+ .+...++.+++.|++.+.+..+.++..|.-|++.+-+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 455555444 489999999886 22346677888899999888777778888898887764
No 178
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=1.6 Score=51.06 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
+..+...+++.+.++|..|..++|..+.+||..-...+. ..+..++..+..+ ++...|..|+-+++.++++.+.....
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhcCcHHHHH
Confidence 444455889999999999999999999999964322221 1233344445544 56677889999999999987655443
Q ss_pred chH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 680 YIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 680 y~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
|.. .=...|.+.+.+++ .+..+..-++.-++.+.......-.-.-...++..+..+....+.+.++.|+.++-...
T Consensus 205 fl~~~G~~~L~~vl~~~~---~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNN---TSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHhcCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 322 11456666676631 24445555555666665433222222233445555555554445678888877766555
Q ss_pred hh
Q 000194 759 QS 760 (1880)
Q Consensus 759 ~~ 760 (1880)
..
T Consensus 282 ~~ 283 (342)
T KOG2160|consen 282 SE 283 (342)
T ss_pred HH
Confidence 43
No 179
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=93.11 E-value=2.7 Score=47.53 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCC
Q 000194 45 LALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRD 124 (1880)
Q Consensus 45 ~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d 124 (1880)
-.++.+.....++...+ ++......++.++.....|..|+..++...... + .....++...++..++
T Consensus 33 p~lr~lak~~~~~~~~~------~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~--~-----~~~~~~~~~~~~~~~~ 99 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLS------EELYELADELWESGYREERYLALLILDKRRKKL--T-----EEDLELLEKWLPDIDN 99 (213)
T ss_dssp HHHHHHHHHHHHHHCTS------HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHhhcccc------hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhh--h-----HHHHHHHHHHhccCCc
Confidence 34666666666665544 334445557888888888888888887765332 1 1255677777775556
Q ss_pred hHHHHHH-HHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh
Q 000194 125 REILVLA-SKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1880)
Q Consensus 125 ~~v~~~a-a~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l 203 (1880)
-.+.+.. ..+++.+.... +...+.+.+|+.++..+.+|.+.+..+..... .++..++..+-..+
T Consensus 100 W~~~D~~~~~~~~~~~~~~--------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 100 WATCDSLCSKLLGPLLKKH--------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHHHHHTHHHHHHHHHHH--------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCT
T ss_pred chhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHc
Confidence 6777766 56677765431 23466788999988888888776665443322 67788888888999
Q ss_pred cCCchhHHHHHHHHHHHHH
Q 000194 204 RDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 204 ~D~~~~VR~aA~~al~~~~ 222 (1880)
.|++..||.+...+|+.+.
T Consensus 165 ~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 180
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.09 E-value=10 Score=44.10 Aligned_cols=234 Identities=16% Similarity=0.189 Sum_probs=131.2
Q ss_pred CCcchhHHHHHHHHHHHHhhcCc-cch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 000194 164 DRVEYRRFAAVLILKEMAENAST-VFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1880)
Q Consensus 164 ~~~~~~R~aA~~~l~~la~~~p~-~l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l 241 (1880)
+.++..|..|+.+|..+.+..|. .+. ..+.-+++-....|.|.. .+..+ ..++.++... . .........++
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~-l~gl~~L~~~-~----~~~~~~~~~i~ 82 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA-LKGLLALVKM-K----NFSPESAVKIL 82 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH-HHHHHHHHhC-c----CCChhhHHHHH
Confidence 34667899999999999999885 343 467777777778886554 34444 5555554421 1 11122234444
Q ss_pred HHHHhhccCCC-ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHh-hhChhhHHH
Q 000194 242 EATQDGLGRNA-PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIA-HFLRDRFVT 318 (1880)
Q Consensus 242 ~~~~~~l~~~~-~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la-~~~~~~f~~ 318 (1880)
..+.+...-+. ....|.....++..+++...+.+...-++.+..++... ..++|.--..+..+++.+. .+...+|.+
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e 162 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE 162 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 44443222111 23568888889998888655444333334444454444 3467766666777777664 344455555
Q ss_pred HHHHHHHHHHHHhhcCCC-C-----cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 319 NYLKICMNHILTVLRIPA-E-----RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 319 ~yl~~~~~~Ll~~L~~~~-~-----r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
.+++.+.-|.=-..+.+. + |..--.+|..- ..... .|-+..++.+.+-|..........+++++...+..
T Consensus 163 ~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~c-l~s~~---~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 163 DLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNC-LSSTP---LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHH-hcCcH---hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 554444433222233222 1 11111111111 11111 24456667777777554444456788888888889
Q ss_pred hCC-CchHHHHHHHHHH
Q 000194 393 MGP-VMEPHVRGLLDIM 408 (1880)
Q Consensus 393 ~g~-~~~~~l~~ll~~l 408 (1880)
+|. .+.||+..+-..|
T Consensus 239 y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 239 YGADSLSPHWSTIWNAL 255 (262)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 987 5788887766554
No 181
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=0.57 Score=53.17 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=105.6
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
.|...+..|.+++++..-.++..+.+|+.++|..+.+.|.++++..+.++++- -+.+-..|+.+++++.......+..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888899999999999999999999999999999999999988764 3344567888999999888766655
Q ss_pred chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 000194 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1880)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~ 759 (1880)
-.+..+..|+.+...+ +.-++..+-.+|..|...... ..+++.++..++.. ...+|..+..++...+.
T Consensus 167 ~ld~lv~~Ll~ka~~d-----nrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQD-----NRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 5555555555554442 556777888888887764332 24566666666654 34566555555444443
Q ss_pred hc
Q 000194 760 ST 761 (1880)
Q Consensus 760 ~~ 761 (1880)
..
T Consensus 235 rl 236 (334)
T KOG2933|consen 235 RL 236 (334)
T ss_pred ec
Confidence 33
No 182
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=2.1 Score=52.05 Aligned_cols=155 Identities=21% Similarity=0.261 Sum_probs=107.6
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
+.+..++.+.++-.|-..+.+++..+.-. + . ..++..|+..+++|.+.+||.+++-+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GT-----------------g--n----~~vv~~lLh~avsD~nDDVrRAAViA 575 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGT-----------------G--N----LGVVSTLLHYAVSDGNDDVRRAAVIA 575 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcC-----------------C--c----chhHhhhheeecccCchHHHHHHHHh
Confidence 34455666777788876666655444211 0 0 23556677788999999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCC-CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1880)
|+- .+|+. ++.+......|.|. ++.||-.+.-.||-.+...+. +.-..+|..|.++ ...-+|+.|+
T Consensus 576 lGf-vc~~D----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-------~~a~diL~~L~~D-~~dfVRQ~Am 642 (926)
T COG5116 576 LGF-VCCDD----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-------KVATDILEALMYD-TNDFVRQSAM 642 (926)
T ss_pred eee-eEecC----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------HHHHHHHHHHhhC-cHHHHHHHHH
Confidence 862 22322 24455555555554 789999988899877765543 2344556666666 5667888898
Q ss_pred HHHHHHHHhCcccccCchHHHHHHHHHHhccC
Q 000194 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1880)
-.++.+.-.+.+.+-|-+..|...+.+.+.+.
T Consensus 643 Ia~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 643 IAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 89999988888888888899999888888764
No 183
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.65 E-value=46 Score=48.87 Aligned_cols=359 Identities=11% Similarity=0.094 Sum_probs=185.7
Q ss_pred HHHHHHHHHhhhcCCcccc---cHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcc--ccc--CchHHHHHHH
Q 000194 616 REYAISVAGRLSEKNPAYV---LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER--LIR--PYIAPIHKAL 688 (1880)
Q Consensus 616 R~~a~~~l~~l~~~~p~~v---~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~--~~~--py~~~il~~l 688 (1880)
|.-.+.-|..++.+|...+ .+.+..++.+.+...... .+...+..|+..|..++-..-+ -+. .+-..++..+
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~-~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCS-ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 4444555555566665432 233334444444433222 2345556666666666643221 111 1223566766
Q ss_pred HHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCccc--c
Q 000194 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI--T 766 (1880)
Q Consensus 689 l~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i--~ 766 (1880)
...+... .+..++..++.|+..|....++.+..=-..++.++-.+..+.+ ...-..|..++..++...-..+ .
T Consensus 1188 e~im~~s----~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~-e~iV~lAFetl~~I~~d~f~~l~~~ 1262 (1780)
T PLN03076 1188 VIVMRKS----NAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDH-KNIVLLAFEIIEKIIREYFPYITET 1262 (1780)
T ss_pred HHHHHhc----CchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHhhhhhcccc
Confidence 6666643 3678999999999999888777777777777777777776543 3344578888888775432222 1
Q ss_pred cCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc-c--CccchhhccccCCCcccccccCCCCCCCCCCCccccccc
Q 000194 767 PYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA-L--DPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDL 843 (1880)
Q Consensus 767 p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga-l--dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 843 (1880)
+..-+..++.+|.++.+...+..+-..++..+..++. + .+.... ......+...+.+.... ...... ..+
T Consensus 1263 ~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~----~~~~~~~~~~~~s~~~~--~~~~~~-~~~ 1335 (1780)
T PLN03076 1263 ETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS----SRNKDKEAPPSSPQSGK--DGKQES-GEF 1335 (1780)
T ss_pred chhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc----ccccccccccccccccc--cccccc-ccc
Confidence 2345667888888888655455666666666655431 0 110000 00000000000000000 000000 000
Q ss_pred CCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCC-C----cchhhHHHHHHHhcC-------
Q 000194 844 WPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVP-Y----LPKVLPDLFHTVRTC------- 911 (1880)
Q Consensus 844 ~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~-~----l~~iip~ll~~l~~~------- 911 (1880)
........+| -.++..|..+..|+.+ +++..+++++-.|+..-|..+.| + +.+++..++..++..
T Consensus 1336 -~~~~~~~~lW-~pLL~~Ls~l~~D~Rl-EVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~ 1412 (1780)
T PLN03076 1336 -TDKDDHLYFW-FPLLAGLSELSFDPRP-EIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGD 1412 (1780)
T ss_pred -ccchhHHHHH-HHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 0000001122 2345566666667654 56778999999999999988765 3 466777777777532
Q ss_pred ----------Cc--c----hhHHHHHHHHHHHHHHHHh---HHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHH
Q 000194 912 ----------DD--Y----LKDYITWKLGTLVSIVRQH---IRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQ 972 (1880)
Q Consensus 912 ----------~~--~----~~~~~~~~l~~lv~~~~~~---i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~ 972 (1880)
++ . +.+.....|..+++.+.++ +.++++.++.++.......+. .+...-..++..
T Consensus 1413 ~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~------~la~ig~~~l~~ 1486 (1780)
T PLN03076 1413 EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQ------SLAGIGIAAFVR 1486 (1780)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHHHHHHHH
Confidence 00 1 2344444555555555544 345667777666655443320 011123555555
Q ss_pred HHHHhhhhhhc-cchhhHHHHHHhc
Q 000194 973 LCLALNDEFRT-HLPVILPCCIQVL 996 (1880)
Q Consensus 973 l~~~l~~~f~~-yl~~l~p~ll~~l 996 (1880)
+...-+..|.+ .+..++..+.+.+
T Consensus 1487 li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1487 LMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHH
Confidence 55555555554 3444444444443
No 184
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=1.6 Score=49.80 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=94.4
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHH
Q 000194 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLK 322 (1880)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~ 322 (1880)
.+...|.+. +|+..-.++-.+..|.+...+.+.+.+.+++-.|+.-+.+....|-+++|-+++.+..+-.... .
T Consensus 92 ~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-----~ 165 (334)
T KOG2933|consen 92 QALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-----D 165 (334)
T ss_pred HHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 344455554 5988888888899888877788999999999989888888888899999999998876544322 2
Q ss_pred HHHHHHHHhh-cCC-C----CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhC
Q 000194 323 ICMNHILTVL-RIP-A----ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1880)
Q Consensus 323 ~~~~~Ll~~L-~~~-~----~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g 394 (1880)
+.+..++.+| .+. . .|..|-.+|-.+...+.. ..++..++.++...+++.+..+..|+......+|
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 2333333332 222 1 267788888877766654 2244555555655555555566677777666665
No 185
>PF05536 Neurochondrin: Neurochondrin
Probab=92.61 E-value=42 Score=43.60 Aligned_cols=187 Identities=17% Similarity=0.184 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhCcc-cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHH
Q 000194 660 EESAKLLGCLIRNCER-LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEA 737 (1880)
Q Consensus 660 ~~a~~~L~~l~~~~~~-~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~ 737 (1880)
.-|..+|..++. -++ ...|-+..-++.++..+.... ...+...++.++..++..- +.-...+ ...+|.+++.
T Consensus 75 ~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s----~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 75 SLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSS----DLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCC----chhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHH
Confidence 345556666654 222 223556677888888887652 3366777788887777322 1111111 3567788887
Q ss_pred HhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 738 LLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE---LVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 738 l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~---~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
+.+ .....+.|+..+..++...+... ..+.+..+..++..+... .....+-+.+..++.+ -|...
T Consensus 149 ~~~--~~~~~E~Al~lL~~Lls~~~~~~--~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~---L~~~~----- 216 (543)
T PF05536_consen 149 IPN--QSFQMEIALNLLLNLLSRLGQKS--WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF---LPRSP----- 216 (543)
T ss_pred HHh--CcchHHHHHHHHHHHHHhcchhh--hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh---cCcCC-----
Confidence 765 34568899999998888766432 223344444444433221 1234455555555443 11110
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG 892 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~ 892 (1880)
.. + . ......-+...+...|..+|+..-....+..+......++...|..
T Consensus 217 --------------~~----~-----~-----~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 217 --------------IL----P-----L-----ESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred --------------cc----c-----c-----ccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 00 0 0 0011122456777888899987655555566777777777777764
No 186
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=92.60 E-value=0.49 Score=46.07 Aligned_cols=89 Identities=21% Similarity=0.345 Sum_probs=68.5
Q ss_pred HHHHHHhcCCC---hhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHH
Q 000194 860 NSLMRILRDPS---LASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIR 935 (1880)
Q Consensus 860 ~~Ll~~L~d~s---~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~ 935 (1880)
+..-..+.|.+ ....+..++.++..+++..|.....+++||+-.+...++ .++++...+.....++..+ ..++.
T Consensus 14 ~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~ 91 (107)
T smart00802 14 AVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELG 91 (107)
T ss_pred HHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHH
Confidence 33344455554 234467899999999998776566677777777777775 4569999999999999887 46899
Q ss_pred HhHHHHHHHHHHhhc
Q 000194 936 KYLQELFSLISELWS 950 (1880)
Q Consensus 936 ~y~~~i~~~i~~~~~ 950 (1880)
|.++.++..+..+|.
T Consensus 92 ~ll~~~~~~i~~~~~ 106 (107)
T smart00802 92 PLLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999986
No 187
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=92.49 E-value=0.52 Score=46.25 Aligned_cols=87 Identities=14% Similarity=0.263 Sum_probs=64.2
Q ss_pred HHHHhcC---CChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH-HhHHHh
Q 000194 862 LMRILRD---PSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR-QHIRKY 937 (1880)
Q Consensus 862 Ll~~L~d---~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~-~~i~~y 937 (1880)
+-..+.| ......+..++.++..+++..|....++.+||+-.+...++. +++++..+.....++..+. .++.|+
T Consensus 16 f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l~~l 93 (107)
T PF08064_consen 16 FSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDLGPL 93 (107)
T ss_pred HHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHHHHH
Confidence 3344444 333355678999999999955544455666666666555544 4789999999999999884 688999
Q ss_pred HHHHHHHHHHhhc
Q 000194 938 LQELFSLISELWS 950 (1880)
Q Consensus 938 ~~~i~~~i~~~~~ 950 (1880)
++.++..+..+|.
T Consensus 94 l~~~~~~l~~~~~ 106 (107)
T PF08064_consen 94 LDQIFAILLPLWD 106 (107)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999986
No 188
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.44 E-value=11 Score=43.29 Aligned_cols=196 Identities=13% Similarity=0.110 Sum_probs=108.2
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
...++++++....+++|..-...+. ...+.+++.|....+..+.+.+..+..++.++...++..+ |.+++.+......
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r 86 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILR 86 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhh
Confidence 4556677777777777742111111 2234567777777777777778889999999999998654 8888876654433
Q ss_pred HhcC----CCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchh
Q 000194 649 LEQS----SADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMR 724 (1880)
Q Consensus 649 l~~~----~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~ 724 (1880)
...+ +...+.....+..+..+++..|+ +-..++..+...+++. .++.+...++.++..+.+..--++.
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~----~~~~~~alale~l~~Lc~~~vvd~~ 158 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQS----CDEVAQALALEALAPLCEAEVVDFY 158 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHhhccHH
Confidence 2221 01112222234466777777766 5566677777777321 2555666667777777644333444
Q ss_pred hhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHh
Q 000194 725 QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1880)
Q Consensus 725 ~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L 782 (1880)
+....+.+.+ +.+.|-.-+++|..++...+.--.....|+.+-..++..+
T Consensus 159 s~w~vl~~~l--------~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~l 208 (234)
T PF12530_consen 159 SAWKVLQKKL--------SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLL 208 (234)
T ss_pred HHHHHHHHhc--------CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHH
Confidence 4333333333 2234544555555554443322112234455544444444
No 189
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.20 E-value=33 Score=41.36 Aligned_cols=169 Identities=12% Similarity=0.144 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHHhcCCchhHHHHHH-HHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 000194 169 RRFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERAV-EALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~~p~---~l~~~l~~i~~~i~~~l~D~~~~VR~aA~-~al~~~~~~i~~r~~~~~~~~~~~~l~~~ 244 (1880)
.|..-+.++.....++++ .....++.+++.++.--++..|..|+.-. ..+..+..-+.+.-....+..+..+++.+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 345556666666666663 33457777888877777777788887643 33333444444333345667778888888
Q ss_pred HhhccCCC--ChhHHHHHHHHHHHHHHcchhhh----HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh----
Q 000194 245 QDGLGRNA--PVHSIHGSLLAVGELLRNTGEFM----MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD---- 314 (1880)
Q Consensus 245 ~~~l~~~~--~~~~~~~al~~l~~ll~~~~~~~----~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~---- 314 (1880)
..-+.++. -++.|.+-...++.+.+.+.+.+ .+.+..+++.++-..+|.++.|....+.++..+......
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 77665432 25888888889999988665433 247788899999999999999999999888887754333
Q ss_pred ---hHHHHHHHHHHHHHHHhhcCCCC
Q 000194 315 ---RFVTNYLKICMNHILTVLRIPAE 337 (1880)
Q Consensus 315 ---~f~~~yl~~~~~~Ll~~L~~~~~ 337 (1880)
.|.+.|+-.++..++.++.+...
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 56667777788888888765543
No 190
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=92.19 E-value=2.4 Score=50.18 Aligned_cols=174 Identities=17% Similarity=0.248 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCC
Q 000194 1245 SQKHLVQSLEMAFSSPNI-PPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDAN 1323 (1880)
Q Consensus 1245 ~~~~l~~~l~~~l~~~~~-p~~i~q~ll~l~efm~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~ 1323 (1880)
.++..+..++..+..+.. ..++++.+. +.+-...|.|..||.+++.. .
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~--------------------A~i~~~~~~~~~AL~~l~~~-----------~ 129 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLA--------------------ATILFHEGDYEEALKLLHKG-----------G 129 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHH--------------------HHHHCCCCHHHHHHCCCTTT-----------T
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHH--------------------HHHHHHcCCHHHHHHHHHcc-----------C
Confidence 455667777777766533 233333222 23334567777888877543 1
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhch----hhhhhcHHHH-HHhc--CHHHHHHHHHHHHhccCCCchhHHhHhh
Q 000194 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQKE----LDVQLKESWY-EKLQ--RWDDALKAYTNKASQASNPHIVLEATLG 1396 (1880)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~~~~~~~~~~-e~lg--~W~~Al~~y~~~~~~~~~~~~~~~~~~g 1396 (1880)
..+++-..+.||-.+|++|.|...++..++. .-.++.+.|. -..| ..++|.-.|++..+..+.. +....|
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---~~~lng 206 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---PKLLNG 206 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---HHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---HHHHHH
Confidence 3467777899999999999999999876532 2244555563 2233 5889999999865432221 455689
Q ss_pred HhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCCh-hhHHHHHhhcC
Q 000194 1397 RMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEW-DQMAEYVSRLD 1454 (1880)
Q Consensus 1397 ~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~W-d~~~~~~~~~~ 1454 (1880)
+..|...+|+|++-....++.... ++.....++- .+-++..+|+. +..++|++.+.
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaN-liv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEK-DPNDPDTLAN-LIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHH-HHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHH-HHHHHHHhCCChhHHHHHHHHHH
Confidence 999999999998877776654332 2222233333 35578899999 66888888764
No 191
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.16 E-value=37 Score=41.95 Aligned_cols=256 Identities=11% Similarity=0.150 Sum_probs=135.8
Q ss_pred HHHHHHHHHHhhccc-----C-CChHHHHHHHHHHHHHhhh---CCCCchhHHHHHHHHHHhhhcCCCcc-hhHHHHHHH
Q 000194 107 KVSKFSNYMRTVFEV-----K-RDREILVLASKVLGHLARA---GGAMTADEVEFQVKMALDWLRGDRVE-YRRFAAVLI 176 (1880)
Q Consensus 107 ~~~~~~~~L~~~l~~-----~-~d~~v~~~aa~~l~~L~~~---~g~~~~~~v~~~~~~~~~~l~~~~~~-~~R~aA~~~ 176 (1880)
++..+..++++=+.. + .|.++...|-+++|.+..+ ......++..+.+..+++-+...... ..-..++.+
T Consensus 36 k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ 115 (372)
T PF12231_consen 36 KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWC 115 (372)
T ss_pred HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344555555443322 1 2678999999999998765 25577888888999999988644332 222333333
Q ss_pred HHHHHhh-cCccchhchHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCC
Q 000194 177 LKEMAEN-ASTVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP 253 (1880)
Q Consensus 177 l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~ 253 (1880)
|+. ++ .|..+.......+-.++..+.++ ...|-..+..+++.++....+.-......|++.+++.+++..+
T Consensus 116 ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k---- 189 (372)
T PF12231_consen 116 LSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAK---- 189 (372)
T ss_pred HHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----
Confidence 322 23 34466666666555555666653 3334333344444443322211112344699988888876332
Q ss_pred hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000194 254 VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1880)
Q Consensus 254 ~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1880)
+.+..|+.++..+....+ ++..+-+.+...+..-- .+..|+ +.+...|...+.
T Consensus 190 -~ir~~a~~l~~~~~~~l~--------------------~~~~~s~~~~~~~~~~~--~~~~~~----~~~~~~L~~mi~ 242 (372)
T PF12231_consen 190 -DIRTKAISLLLEAKKCLG--------------------PNKELSKSVLEDLQRSL--ENGKLI----QLYCERLKEMIK 242 (372)
T ss_pred -HHHHHHHHHHHHHHHHhC--------------------hhHHHHHHHHHHhcccc--ccccHH----HHHHHHHHHHHh
Confidence 344444433332222111 12222222222222111 111233 333444444444
Q ss_pred CCCCcchHHHHHHHHHhhchhh-h--hhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCC
Q 000194 334 IPAERDSGFIALGEMAGALDGE-L--FHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP 395 (1880)
Q Consensus 334 ~~~~r~~a~~alg~la~~v~~~-~--~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~ 395 (1880)
..++-..|.+.=+.+...+|.. + -+|++..+.....++...++..+..|+.||..+..+..+
T Consensus 243 ~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 243 SKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred CcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3222233444434444444432 2 378899999999999776655667899999999887665
No 192
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.95 E-value=4.2 Score=45.43 Aligned_cols=187 Identities=21% Similarity=0.188 Sum_probs=107.2
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcc----------cccHHHH
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA----------YVLPALR 639 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~----------~v~p~l~ 639 (1880)
..+.+|.||..+-++|+. .++ ++.++.+-...+|+..+||++..-.+.++--.... .+-|.-+
T Consensus 78 desq~pmvRhEAaealga--~~~-----~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p 150 (289)
T KOG0567|consen 78 DESQEPMVRHEAAEALGA--IGD-----PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP 150 (289)
T ss_pred ccccchHHHHHHHHHHHh--hcc-----hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc
Confidence 356789999999999862 222 46677777777899999998766666665332210 0111100
Q ss_pred ---HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 640 ---RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 640 ---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
..+.++=..+.+.....-.|..|.-.|-++ + -+.-+..+...+.++ +.-++..+..++|.|-
T Consensus 151 ~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----g------~EeaI~al~~~l~~~-----SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 151 ANLSSVHELRAELLDETKPLFERYRAMFYLRNI----G------TEEAINALIDGLADD-----SALFRHEVAFVFGQLQ 215 (289)
T ss_pred cccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----C------cHHHHHHHHHhcccc-----hHHHHHHHHHHHhhcc
Confidence 001111111111101111222222211111 0 123344555555543 5556677777887764
Q ss_pred HhcCCchhhhHHhHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHH
Q 000194 717 RVGGFGMRQYISELMPLIVEALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1880)
Q Consensus 717 ~~~g~~~~~~~~~l~p~l~~~l~d~-~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l 795 (1880)
. +..+|.+.+.|.|. ....+|..|+.+||.++. ++.++.|-..++++ .+-||..+.
T Consensus 216 s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------------e~~~~vL~e~~~D~-~~vv~esc~ 272 (289)
T KOG0567|consen 216 S----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------------EDCVEVLKEYLGDE-ERVVRESCE 272 (289)
T ss_pred c----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------------HHHHHHHHHHcCCc-HHHHHHHHH
Confidence 3 35678888888763 456899999999998752 46788888888655 678888776
Q ss_pred HHHHHH
Q 000194 796 KVLGIM 801 (1880)
Q Consensus 796 ~~lg~l 801 (1880)
-++..+
T Consensus 273 valdm~ 278 (289)
T KOG0567|consen 273 VALDML 278 (289)
T ss_pred HHHHHH
Confidence 666554
No 193
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.78 E-value=0.76 Score=54.63 Aligned_cols=254 Identities=19% Similarity=0.222 Sum_probs=69.1
Q ss_pred HHHHHHhhcCChHHHhHHHH-HHhchhhh------hhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHH
Q 000194 1330 ALIHINNQLHQHEAAVGILT-YAQKELDV------QLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLA 1402 (1880)
Q Consensus 1330 ~L~~iy~~L~~~D~~~Gi~~-~~~~~~~~------~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~ 1402 (1880)
.+..++-+.|+++.+..+++ ......+. ......++.+|++++|..+|++.+...+.. ......++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~---~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN---PQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccc-c
Confidence 45777778888888887774 22221011 112234688999999999999887533221 1223334444 5
Q ss_pred HhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHH
Q 000194 1403 ALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRA 1482 (1880)
Q Consensus 1403 ~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a 1482 (1880)
..++.+.-...+...|.... + .......+..+.+.|+|+.....+........ ...+..||..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~--~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~ 151 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDG-D--PRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWLA 151 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHHH
T ss_pred cccccccccccccccccccc-c--cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHHH
Confidence 67777777777666554321 1 22233456778899999999988876432110 0122334433
Q ss_pred --HHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHH-H
Q 000194 1483 --VLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAV-R 1559 (1880)
Q Consensus 1483 --~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~-R 1559 (1880)
......|+. ..| +.-++.+++. .|+. ..-. ..-.|. + .-..+.+.-..++.. .
T Consensus 152 ~a~~~~~~G~~----~~A---------~~~~~~al~~--~P~~----~~~~--~~l~~~--l-i~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 152 LAEIYEQLGDP----DKA---------LRDYRKALEL--DPDD----PDAR--NALAWL--L-IDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHCCHH----HHH---------HHHHHHHHHH---TT-----HHHH--HHHHHH--H-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH----HHH---------HHHHHHHHHc--CCCC----HHHH--HHHHHH--H-HHCCChHHHHHHHHHHH
Confidence 333333431 111 1222233221 1211 1111 112232 1 111122221122211 1
Q ss_pred HhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Q 000194 1560 ALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARL 1639 (1880)
Q Consensus 1560 ~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L 1639 (1880)
... ..+...|..++.....-|+.+.|...+.++...+| .+|.+...++..++..|. ..+|....
T Consensus 208 ~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p----------~d~~~~~~~a~~l~~~g~---~~~A~~~~ 271 (280)
T PF13429_consen 208 KAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP----------DDPLWLLAYADALEQAGR---KDEALRLR 271 (280)
T ss_dssp HH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST----------T-HHHHHHHHHHHT---------------
T ss_pred HHC---cCHHHHHHHHHHHhccccccccccccccccccccc----------cccccccccccccccccc---cccccccc
Confidence 111 23456788899999999999999999999887655 358999999999999995 57888877
Q ss_pred HHHHH
Q 000194 1640 QTLAM 1644 (1880)
Q Consensus 1640 ~~~~~ 1644 (1880)
+....
T Consensus 272 ~~~~~ 276 (280)
T PF13429_consen 272 RQALR 276 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 76543
No 194
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.75 E-value=56 Score=43.18 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=68.7
Q ss_pred ccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHH------HHHhcCHH
Q 000194 1298 CRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESW------YEKLQRWD 1371 (1880)
Q Consensus 1298 c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~------~e~lg~W~ 1371 (1880)
.|.+..|...++.-+.+ ++.....+..|..||.+.|+..-+.--+..+. ++..+-.+.| .+++|+|+
T Consensus 152 rg~~eeA~~i~~EvIkq------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred hCCHHHHHHHHHHHHHh------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHH
Confidence 36777788777555543 34446678999999999998776553333222 2222233455 69999999
Q ss_pred HHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000194 1372 DALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1880)
Q Consensus 1372 ~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1880)
+|--||.+.++..+.. ++....++.=+.++|+...-
T Consensus 225 qA~~cy~rAI~~~p~n---~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSN---WELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHHHHHHHHHhcCCcc---hHHHHHHHHHHHHhChHHHH
Confidence 9999999999754332 55566666667777776443
No 195
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.56 E-value=18 Score=40.76 Aligned_cols=166 Identities=15% Similarity=0.158 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....+...+....+.|+++.|...+.++...+|. .+......+.+.+.+|+ ..+|+..+++.+....
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~ 96 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----------DYLAYLALALYYQQLGE---LEKAEDSFRRALTLNP 96 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 3678899999999999999999999888765442 35666778888888885 5789988887664311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA--TKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~--~~~~k~w~~wA~~n~~~ 1725 (1880)
. . ...+..+|...... ...++..+.|..+.+.. +.....|..+|......
T Consensus 97 ~------------------~----~~~~~~~~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 97 N------------------N----GDVLNNYGTFLCQQ------GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred C------------------C----HHHHHHHHHHHHHc------ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 0 0 11233333333222 24577888888887643 34456666666554321
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
.-...|+..|-+++...+ ........+-.+++..|+.++....+++.+.
T Consensus 149 --------------g~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 149 --------------GDFDKAEKYLTRALQIDP------QRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred --------------CCHHHHHHHHHHHHHhCc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123467888888877642 2233455666777777877766666665543
No 196
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.41 E-value=39 Score=40.69 Aligned_cols=131 Identities=15% Similarity=0.214 Sum_probs=96.3
Q ss_pred cCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCC--cchhHHHHHHHHHHHHhhcCccch----hchHH
Q 000194 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDR--VEYRRFAAVLILKEMAENASTVFN----VHVAE 194 (1880)
Q Consensus 121 ~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~--~~~~R~aA~~~l~~la~~~p~~l~----~~l~~ 194 (1880)
...|++|....+..+.++-..-....+..++..+...++-+.++- -+..|.+=..+++.+.++|+..+. ..+..
T Consensus 86 ~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~ 165 (319)
T PF08767_consen 86 DAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL 165 (319)
T ss_dssp GGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH
T ss_pred cccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH
Confidence 356899999999888887765445667777777777777776433 347888889999999999988654 46788
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH----HHHHHHHHHhhccCC
Q 000194 195 FVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW----YYRMFEATQDGLGRN 251 (1880)
Q Consensus 195 i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~----~~~~l~~~~~~l~~~ 251 (1880)
+++.+.-|+++++..|.+.+.+++..+++.+...+......+ |..++..+..-+.++
T Consensus 166 ~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 166 VIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 899999999999999999999999998887775233333333 444555555555544
No 197
>PLN03077 Protein ECB2; Provisional
Probab=91.36 E-value=81 Score=44.23 Aligned_cols=127 Identities=12% Similarity=0.105 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhcCChHHHhHHHHHHhch--hhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHH
Q 000194 1326 AVVEALIHINNQLHQHEAAVGILTYAQKE--LDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAA 1403 (1880)
Q Consensus 1326 ~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~ 1403 (1880)
.+...|+..|.+.|+.|.+..++...... ...+.....|-+.|++++|++.|++.....-.|+. ......+..+..
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~--~ty~~ll~a~~~ 300 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL--MTITSVISACEL 300 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHh
Confidence 45678999999999999999988753321 01111222488999999999999886654444542 345677888888
Q ss_pred hhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCC
Q 000194 1404 LARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDG 1456 (1880)
Q Consensus 1404 Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~ 1456 (1880)
+|+++.-.+........ ..++ ..+......+..+.|+|+...+..+.++..
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVD--VSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccc--hHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 88886554443321111 1111 122234456777889999999888887653
No 198
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.31 E-value=8.7 Score=50.19 Aligned_cols=183 Identities=13% Similarity=0.060 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCH
Q 000194 1615 VMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESI 1694 (1880)
Q Consensus 1615 v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~ 1694 (1880)
-.+..|..+.++|+ .++|..++.+++..-. .....|..+|.-..+. ...
T Consensus 141 ~ll~eAN~lfarg~---~eeA~~i~~EvIkqdp----------------------~~~~ay~tL~~IyEqr------Gd~ 189 (895)
T KOG2076|consen 141 QLLGEANNLFARGD---LEEAEEILMEVIKQDP----------------------RNPIAYYTLGEIYEQR------GDI 189 (895)
T ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHHhCc----------------------cchhhHHHHHHHHHHc------ccH
Confidence 35678889999995 6899999999886321 1122344444443332 135
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1695 PEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1695 ~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
+..+.....|..++|+.+.-|..||...-+ ..++..|.-||-|+|++. ....+.+.+=-+
T Consensus 190 eK~l~~~llAAHL~p~d~e~W~~ladls~~--------------~~~i~qA~~cy~rAI~~~------p~n~~~~~ers~ 249 (895)
T KOG2076|consen 190 EKALNFWLLAAHLNPKDYELWKRLADLSEQ--------------LGNINQARYCYSRAIQAN------PSNWELIYERSS 249 (895)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHh--------------cccHHHHHHHHHHHHhcC------CcchHHHHHHHH
Confidence 667788888999999999999999976332 247789999999999985 345888999999
Q ss_pred HHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccC-C--ChhHHHHHHHHHHHHH-----hhCchhhHHHHHHHh
Q 000194 1775 LWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHS-N--NRAVRELIQSLLVRIG-----QSHPQALMYPLLVAC 1846 (1880)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~~-~--~~~v~~~l~~lL~~i~-----~~hPqa~ly~L~~~~ 1846 (1880)
|.-++|....--+.+.+-+...|+.-| .++-++|=+.-| + .......+..|--.+. ..+|++=+|..+.+.
T Consensus 250 L~~~~G~~~~Am~~f~~l~~~~p~~d~-er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 250 LYQKTGDLKRAMETFLQLLQLDPPVDI-ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHhChHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 999999988777788888888884333 445555555322 1 1122334444433333 356777777777666
Q ss_pred cCC
Q 000194 1847 KSI 1849 (1880)
Q Consensus 1847 kS~ 1849 (1880)
++.
T Consensus 329 ~~q 331 (895)
T KOG2076|consen 329 NKQ 331 (895)
T ss_pred hHH
Confidence 543
No 199
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.22 E-value=2.8 Score=51.04 Aligned_cols=167 Identities=18% Similarity=0.254 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhh--ccHhhHHHHH-HHhCCCCHhHHHHHHHHHHhhhcCCcc
Q 000194 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFL--AQADCLSAIF-AALNDEDFDVREYAISVAGRLSEKNPA 632 (1880)
Q Consensus 556 ~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L--~~~~~l~~L~-~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1880)
++.++++.+| ..|.|+-.|..-+-++.. .|. ....+++.++ .+.+|.+.+||++|+-.||-++-..|.
T Consensus 515 e~add~I~el----l~d~ds~lRy~G~fs~al-----Ay~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~ 585 (926)
T COG5116 515 EMADDYINEL----LYDKDSILRYNGVFSLAL-----AYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD 585 (926)
T ss_pred HHHHHHHHHH----hcCchHHhhhccHHHHHH-----HHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc
Confidence 4556666555 478888888765554431 111 0123455554 458899999999999999988777654
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Q 000194 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1880)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1880)
.+ ...+.-|..+ ..+.+|.-.+-+||-.+...+. ...+++|-+.+.|. ..-|++.++.++
T Consensus 586 ~l--------v~tvelLs~s-hN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~-----~dfVRQ~AmIa~ 645 (926)
T COG5116 586 LL--------VGTVELLSES-HNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDT-----NDFVRQSAMIAV 645 (926)
T ss_pred hh--------hHHHHHhhhc-cchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCc-----HHHHHHHHHHHH
Confidence 32 2222333344 5677887777788877766552 22333444444443 677899999999
Q ss_pred HHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 713 GDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 713 ~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
+.+.....+++.|.+..+...+.+.+.| +++.++.-||.
T Consensus 646 ~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~-----Khe~glaklGA 684 (926)
T COG5116 646 GMILMQCNPELNPNVKRIIKKFNRVIVD-----KHESGLAKLGA 684 (926)
T ss_pred HHHHhhcCcccChhHHHHHHHHHHHHhh-----hhHhHHHHHHH
Confidence 9988888899999999999999998875 34455555553
No 200
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.14 E-value=4.5 Score=48.49 Aligned_cols=197 Identities=17% Similarity=0.198 Sum_probs=116.1
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccccc-H---HHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhC
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL-P---ALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC 673 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~-p---~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~ 673 (1880)
.+.+..|...+..-+++.|..+..+++.+....+..=. | ++.....+++..+-...+.++.--.+..+|-+.++.-
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 46788888888888899999999999999887765422 2 2222112222222211122332223333333333210
Q ss_pred --cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc----CCchhhhHHhHHHHHHHHHhcCCchhhH
Q 000194 674 --ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAAVTKR 747 (1880)
Q Consensus 674 --~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~l~p~l~~~l~d~~~~~~r 747 (1880)
...+.. .+.+..+...+.. .+-++...++.++.++-..- .+.+..+++.++..+...+... +.-.|
T Consensus 155 ~l~~~iL~--~~~f~~ff~~~~~-----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtk 226 (335)
T PF08569_consen 155 SLAKIILY--SECFWKFFKYVQL-----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTK 226 (335)
T ss_dssp HHHHHHHT--SGGGGGHHHHTTS-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHH
T ss_pred HHHHHHhC--cHHHHHHHHHhcC-----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEee
Confidence 000000 1112223333333 37888899999998866432 3456667778888666666544 56678
Q ss_pred HHHHHHHHHHHhhcCc--ccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc
Q 000194 748 EVAVSTLGQVVQSTGY--VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 748 ~~Al~~Lg~l~~~~~~--~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga 803 (1880)
..+++-||.+...-.. ++.-|..-|+-|..++.+|++ .+..++.+|++++-...|
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHh
Confidence 8999999998854433 245667779999999999985 489999999999877654
No 201
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=33 Score=39.34 Aligned_cols=281 Identities=14% Similarity=0.090 Sum_probs=137.1
Q ss_pred CCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH-HHHHHHHHHHHhcCC
Q 000194 495 KGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADA 573 (1880)
Q Consensus 495 ~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~ 573 (1880)
+|.++.|-++..+...+-+++..|..-|...++.++.. ++. +..+. ...++ .++++.++ -.+...
T Consensus 75 egahlapnlmpdLQrGLiaddasVKiLackqigcilEd----cDt--------naVse-illvvNaeilklil-dcIgge 140 (524)
T KOG4413|consen 75 EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILED----CDT--------NAVSE-ILLVVNAEILKLIL-DCIGGE 140 (524)
T ss_pred cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhc----Cch--------hhHHH-HHHHhhhhHHHHHH-HHHcCC
Confidence 35556565555555667777777876666665555532 110 00001 11222 34444333 356777
Q ss_pred ChhHHHHHHHhccCCCCcchhhccHhhHHHHHHH-hCCC----------CHhHHHHHHHHHHhhhcCCcccccHHHH-HH
Q 000194 574 DVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAA-LNDE----------DFDVREYAISVAGRLSEKNPAYVLPALR-RH 641 (1880)
Q Consensus 574 ~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~-l~D~----------~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~ 641 (1880)
|.+|-.++.++++.-..| |.-+..+|.. ++|+ +.-+|-.++.++-.+....|......-. ..
T Consensus 141 ddeVAkAAiesikrialf------paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL 214 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALF------PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL 214 (524)
T ss_pred cHHHHHHHHHHHHHHHhc------HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence 888888888887521222 2234444421 1221 2245667777777777766643221111 23
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHh-CcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHH---
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR--- 717 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~--- 717 (1880)
+.++..+++.. +|.-++...+++...+++. .+..+.|. ..+++.+...+...+ .+|--.-.++...|.+-.
T Consensus 215 ldlLeaElkGt-eDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGad---sdPfekfralmgfgkffgkea 289 (524)
T KOG4413|consen 215 LDLLEAELKGT-EDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGAD---SDPFEKFRALMGFGKFFGKEA 289 (524)
T ss_pred HHHHHHHhcCC-cceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCC---CCcHHHHHHHHHHHHHhcchH
Confidence 34455667665 6677788888888888864 23222221 345555555544321 122222222333333211
Q ss_pred ---hcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHH-HHHHHhcCCCCHHHHHH
Q 000194 718 ---VGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLG-LLLKMLNGELVWSTRRE 793 (1880)
Q Consensus 718 ---~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~-~Ll~~L~~~~~~~vr~~ 793 (1880)
+..+.+..-+.-.+.-.+.++. .++++.-++|+.++|.+-+++...--....-|+-.+ .+.++.....+ .-..+
T Consensus 290 imdvseeaicealiiaidgsfEmiE-mnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnah-akqea 367 (524)
T KOG4413|consen 290 IMDVSEEAICEALIIAIDGSFEMIE-MNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH-AKQEA 367 (524)
T ss_pred HhhcCHHHHHHHHHHHHHhhHHhhh-cCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccccc-chHHH
Confidence 1122222222222222233333 235667789999999987776543101111232333 33344432222 23456
Q ss_pred HHHHHHHHc
Q 000194 794 VLKVLGIMG 802 (1880)
Q Consensus 794 ~l~~lg~lg 802 (1880)
+++++..+.
T Consensus 368 aihaLaaIa 376 (524)
T KOG4413|consen 368 AIHALAAIA 376 (524)
T ss_pred HHHHHHHhh
Confidence 778877664
No 202
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.05 E-value=3.2 Score=51.30 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHHHhhccCCHHHHHHHHHH-HHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccc
Q 000194 1528 EGRRAIIRNMWTERIQGTKRNVEVWQALLAV-RALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHEN 1606 (1880)
Q Consensus 1528 ~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~-R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~ 1606 (1880)
.+...++-+.|++|=+ .++-|.. |..+--..+..+.|+..+...-..|+...|..+...+++++|..-.
T Consensus 116 ae~ysn~aN~~kerg~--------~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c-- 185 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQ--------LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC-- 185 (966)
T ss_pred HHHHHHHHHHHHHhch--------HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh--
Confidence 3455667889988732 2222222 3333223356899999999999999999999999999988764210
Q ss_pred ccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcC
Q 000194 1607 VRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALP 1686 (1880)
Q Consensus 1607 ~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~ 1686 (1880)
+.---..++=++|. -.||-....+-+.. . .-.|-++.-+|--...
T Consensus 186 --------a~s~lgnLlka~Gr---l~ea~~cYlkAi~~---q-------------------p~fAiawsnLg~~f~~-- 230 (966)
T KOG4626|consen 186 --------ARSDLGNLLKAEGR---LEEAKACYLKAIET---Q-------------------PCFAIAWSNLGCVFNA-- 230 (966)
T ss_pred --------hhcchhHHHHhhcc---cchhHHHHHHHHhh---C-------------------CceeeeehhcchHHhh--
Confidence 00011123333442 23444333322211 0 0122222222322211
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh------hhc----cCCC----------CchhhHHHHHH
Q 000194 1687 PGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH------YTL----RGLP----------SVAPQFVVHAV 1746 (1880)
Q Consensus 1687 ~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~------~~~----~~~~----------~~~~~~~~~ai 1746 (1880)
...+...+++|++|++++|+...|+..++.+..+.... |.+ +.+. +..+-.+..||
T Consensus 231 ----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 231 ----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred ----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence 23567789999999999999999999998887664321 110 0000 01123567899
Q ss_pred HHHHHHHhhcc
Q 000194 1747 TGYFHSIACAA 1757 (1880)
Q Consensus 1747 ~~y~~si~~~~ 1757 (1880)
.+|-|+|.+++
T Consensus 307 ~~Ykral~~~P 317 (966)
T KOG4626|consen 307 DTYKRALELQP 317 (966)
T ss_pred HHHHHHHhcCC
Confidence 99999999864
No 203
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.02 E-value=28 Score=41.17 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=106.5
Q ss_pred cCCChhhhhhHHHHHhHhhccccCcchhHHHHH--HHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHH
Q 000194 79 ESNDAAENLGALRAIDELIDVALGENASKVSKF--SNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVK 155 (1880)
Q Consensus 79 ~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~--~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~ 155 (1880)
.+.+..+|.+++--+.-++.-. ++++.+..+ ..-|...+. ..|.+++..|++++|..+......+..+++. -+.
T Consensus 93 ~s~~le~ke~ald~Le~lve~i--DnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDI--DNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh--hhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 3578899999998888886532 233333322 223333554 5689999999999999988632222223322 234
Q ss_pred HHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh--chHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchh
Q 000194 156 MALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV--HVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETR 231 (1880)
Q Consensus 156 ~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~--~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1880)
.++..+..+.+...|..|+.+++.+..+-+..... -++. ...+..+|.++ +...+.-|..-+..++.--. .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~--s-- 244 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK--S-- 244 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh--h--
Confidence 44455556777788999999999999986643221 2222 45667788774 45555666665665543211 1
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000194 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1880)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1880)
.....-...++.....+..+.++++...++.++-.++.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 11111122333333334444446667777666655544
No 204
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.98 E-value=4.8 Score=47.51 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC-CCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhH
Q 000194 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHI 934 (1880)
Q Consensus 856 ~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~-~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i 934 (1880)
..+-..|-+.|...=.+.+|..+.+....||+.+|.. +...++-..|+++-.+..+.-++|..++..+...+-.+++.+
T Consensus 53 ~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L 132 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPAL 132 (307)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHH
Confidence 4566778888855545678999999999999999886 456777888888888877766677666665555544555566
Q ss_pred HHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh
Q 000194 935 RKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE 980 (1880)
Q Consensus 935 ~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~ 980 (1880)
+|.++.++..+.-.+.... ......++.+++.+..+++..
T Consensus 133 ~p~l~~li~slLpGLede~------sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEG------SEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHhccccccCC------chHHHHHHHHHHHHHHhcChh
Confidence 6666666555554444221 011224666666666666655
No 205
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=90.89 E-value=76 Score=46.79 Aligned_cols=167 Identities=14% Similarity=0.115 Sum_probs=99.5
Q ss_pred HHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH----H----HHHHHHhhccc
Q 000194 50 HIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVS----K----FSNYMRTVFEV 121 (1880)
Q Consensus 50 ~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~----~----~~~~L~~~l~~ 121 (1880)
-|.+....++.+.+..|+..|...-.+=++++. ...+.++..|+++..- +..+++ + +.+|+..+- +
T Consensus 1074 kIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~----~pr~FsLqKLveIa~~-Nm~Rirl~W~~iW~~l~~hf~~vg-~ 1147 (1780)
T PLN03076 1074 RIFTRSQKLNSEAIIDFVKALCKVSMEELRSPS----DPRVFSLTKIVEIAHY-NMNRIRLVWSSIWHVLSDFFVTIG-C 1147 (1780)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhHHHHccCC----CCchhHHHHHHHHHHh-cccchheehHhHHHHHHHHHHHhc-C
Confidence 344556788888888877777664333333322 2367778888777422 222322 1 223333321 2
Q ss_pred CCChHHHHHHHHHHHHHhhhCCC--Cchh-HHHHHHHHHHhh-hcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHH
Q 000194 122 KRDREILVLASKVLGHLARAGGA--MTAD-EVEFQVKMALDW-LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVD 197 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~~g~--~~~~-~v~~~~~~~~~~-l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~ 197 (1880)
..+.+++-.|...|.+|+...-. ..+. -++..+=+-++. +........|.-.+..+.++.......+..==..|+.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 33567778888888888774211 1111 122222233333 3444555788888899998888777767766677888
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 198 AIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
.+-.+..|+++.+-+.|.+.+..++
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~ 1252 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKII 1252 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHH
Confidence 8888888999888777777766543
No 206
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=90.85 E-value=5 Score=45.03 Aligned_cols=165 Identities=17% Similarity=0.240 Sum_probs=97.8
Q ss_pred HHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCC------CHhHHHHHHHHHHhhhcCCcccccHHHH
Q 000194 566 LIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDE------DFDVREYAISVAGRLSEKNPAYVLPALR 639 (1880)
Q Consensus 566 l~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~------~~~VR~~a~~~l~~l~~~~p~~v~p~l~ 639 (1880)
+.....+.+...|.+++++|..+.- + ...++..+..++|. +.++-...+.....|....--.+-|++.
T Consensus 203 isal~dEs~~~~r~aAl~sLr~dsG----l--hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~h 276 (450)
T COG5095 203 ISALLDESDEQTRDAALESLRNDSG----L--HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLH 276 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcc----H--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHH
Confidence 3333567789999999999964322 2 12345444444432 2333344444444555544445679999
Q ss_pred HHHHHHHHHHh-----cCCCC---hHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHH
Q 000194 640 RHLIQLLTYLE-----QSSAD---NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711 (1880)
Q Consensus 640 ~~l~~~l~~l~-----~~~~~---~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~ 711 (1880)
++|..+++.+- +++.+ ...|.-|+.+++-+.++.++..+..-+.+...+++.+-|.. ...+..-+++.+
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~---k~~sT~YGalkg 353 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE---KTESTQYGALKG 353 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc---cccchhhhhhhh
Confidence 98888777652 23122 23677899999999998887777767778888888877653 233344566677
Q ss_pred HHHHHHhc-CCchhhhHHhHHHHHHHHHh
Q 000194 712 VGDLARVG-GFGMRQYISELMPLIVEALL 739 (1880)
Q Consensus 712 l~~La~~~-g~~~~~~~~~l~p~l~~~l~ 739 (1880)
+..|.... ...+.|.++-....+.+.|.
T Consensus 354 ls~l~ke~ir~~i~pn~~~y~rlv~ktle 382 (450)
T COG5095 354 LSILSKEVIRTVIKPNADYYVRLVNKTLE 382 (450)
T ss_pred hhhhchhheeeeeccchHHHHHHHHHHHh
Confidence 76665321 22334444444444444443
No 207
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.70 E-value=2.6 Score=44.19 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000194 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1880)
Q Consensus 1613 ~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~ 1692 (1880)
|...+..+..++..|+ ..+|+..++..+.. . +. ...--..++.++..+|+|
T Consensus 24 p~~~~~~g~~~~~~g~---~~~A~~~~~~al~~-~--P~------------~~~a~~~lg~~~~~~g~~----------- 74 (144)
T PRK15359 24 PETVYASGYASWQEGD---YSRAVIDFSWLVMA-Q--PW------------SWRAHIALAGTWMMLKEY----------- 74 (144)
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHc-C--CC------------cHHHHHHHHHHHHHHhhH-----------
Confidence 4445667888888884 67899988876532 1 00 011123355556566555
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
++.+..|..|++++|++..+|+.+|....+. + -...|+..|-+++.+.
T Consensus 75 --~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~-------g-------~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 75 --TTAINFYGHALMLDASHPEPVYQTGVCLKMM-------G-------EPGLAREAFQTAIKMS 122 (144)
T ss_pred --HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-------C-------CHHHHHHHHHHHHHhC
Confidence 6788999999999999999999999875542 1 2236899999999885
No 208
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.52 E-value=99 Score=43.76 Aligned_cols=99 Identities=18% Similarity=0.116 Sum_probs=60.1
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
.+.-+.|-+++||.+++......+...+.. ..... .++.....|.|+++|......+.
T Consensus 305 fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~------------------~~~~~----~~~~l~~~~~D~~~rir~~v~i~ 362 (1266)
T KOG1525|consen 305 FLGRFNDISVEVRMECVESIKQCLLNNPSI------------------AKAST----ILLALRERDLDEDVRVRTQVVIV 362 (1266)
T ss_pred HHHHhccCChhhhhhHHHHhHHHHhcCchh------------------hhHHH----HHHHHHhhcCChhhhheeeEEEE
Confidence 344456778999999888777777654321 11111 11222335677777776555553
Q ss_pred CC--CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhc
Q 000194 587 GN--RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSE 628 (1880)
Q Consensus 587 ~~--~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~ 628 (1880)
.+ ..|.-.+... .+..+-.-+.|....||..|+.-+..+-+
T Consensus 363 ~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 363 ACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred EeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22 1222212222 66777778889999999999998877665
No 209
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=38 Score=38.93 Aligned_cols=200 Identities=12% Similarity=0.125 Sum_probs=107.2
Q ss_pred cchhHHH---HHHHHHHHHhh-cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH----H
Q 000194 166 VEYRRFA---AVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW----Y 237 (1880)
Q Consensus 166 ~~~~R~a---A~~~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~----~ 237 (1880)
+++.|.. .+.+|.-+-.. -|..+. +++.|.+-.+|..++..|.--|+..++.+++ +-+.+..... -
T Consensus 53 NenhrekttlcVscLERLfkakegahla---pnlmpdLQrGLiaddasVKiLackqigcilE---dcDtnaVseillvvN 126 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLA---PNLMPDLQRGLIADDASVKILACKQIGCILE---DCDTNAVSEILLVVN 126 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhc---hhhhHHHHhcccCCcchhhhhhHhhhhHHHh---cCchhhHHHHHHHhh
Confidence 4556655 33344433332 222333 3455666689999999998878777766544 3333222222 3
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHH-HHHHh-hcchhHHHHHHHHHhHhHhhhChh
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEI-VLRYL-EHRDRLVRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~-ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~ 314 (1880)
..+++.+...+...+ .++..+|+.-+..+..... .|..-|+. +.+. =++.+ -..+..+|-.+..+|-.+.+.++.
T Consensus 127 aeilklildcIgged-deVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 127 AEILKLILDCIGGED-DEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 467888888887764 5788998888877765211 11111110 0000 00101 123566788888888888877775
Q ss_pred hHHHHHH--HHHHHHHHHhhcCCCC---cchHHHHHHHHHhhchhhhhhhhh--HHHHHHHHhhcCCCCC
Q 000194 315 RFVTNYL--KICMNHILTVLRIPAE---RDSGFIALGEMAGALDGELFHYLP--TITSHLREAIAPRRGK 377 (1880)
Q Consensus 315 ~f~~~yl--~~~~~~Ll~~L~~~~~---r~~a~~alg~la~~v~~~~~p~l~--~i~~~l~~~l~~~~~~ 377 (1880)
.. +|. ..++..|..-++-.++ +...++....++..-.+ ..|++ .+++.|...+.-.+.+
T Consensus 205 sa--neckkSGLldlLeaElkGteDtLVianciElvteLaeteHg--reflaQeglIdlicnIIsGadsd 270 (524)
T KOG4413|consen 205 SA--NECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG--REFLAQEGLIDLICNIISGADSD 270 (524)
T ss_pred HH--hHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh--hhhcchhhHHHHHHHHhhCCCCC
Confidence 43 233 3455555555654343 44455555555543322 34554 3566666666444333
No 210
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=90.17 E-value=42 Score=38.99 Aligned_cols=239 Identities=13% Similarity=0.119 Sum_probs=134.6
Q ss_pred HhhhcCCChhhhhhHHHHHhHhhccccCc--chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH
Q 000194 75 SGLLESNDAAENLGALRAIDELIDVALGE--NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1880)
Q Consensus 75 ~~l~~s~~~~~r~~~i~ai~~Li~~~~~~--~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~ 152 (1880)
-+.+.+.|...|..|+..+...+.--..+ +.+.+.-+.+|...-+ .|...+..+.+++..|+.. .....+....
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl---~D~~~~~~~l~gl~~L~~~-~~~~~~~~~~ 80 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL---DDHACVQPALKGLLALVKM-KNFSPESAVK 80 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh---ccHhhHHHHHHHHHHHHhC-cCCChhhHHH
Confidence 34567788899999999999887653222 3445566666666555 3788888889999988854 2344445566
Q ss_pred HHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhhhch
Q 000194 153 QVKMALDWLR-GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRET 230 (1880)
Q Consensus 153 ~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1880)
.++.+++... .......|.....++..+.++-...+...=+.++..++..+. +.+|+-=--+.+-+..++....
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~---- 156 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD---- 156 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc----
Confidence 6666665443 233446799999999999888655555444566666665552 3334322223333332222111
Q ss_pred hhHHHHHHHHHHHHHhhc----cCC-CCh--hHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHH
Q 000194 231 RWRVQWYYRMFEATQDGL----GRN-APV--HSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSIT 302 (1880)
Q Consensus 231 ~~~~~~~~~~l~~~~~~l----~~~-~~~--~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~ 302 (1880)
. .+....+++.+...+ ..+ ++. -.+..=-.+|...+.. .+.|. -.++.++..+++..+.++.-++
T Consensus 157 -~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s-----~~~fa~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 157 -I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS-----TPLFAPFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred -c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC-----cHhhHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 2 344555666555432 111 111 0111111122222221 23343 3567788888888888888888
Q ss_pred HHhHhHhh-hChhhHHHHHHHHHHHHHH
Q 000194 303 SLLPRIAH-FLRDRFVTNYLKICMNHIL 329 (1880)
Q Consensus 303 ~~i~~la~-~~~~~f~~~yl~~~~~~Ll 329 (1880)
.++...+. |.+.... .|+..+-..|.
T Consensus 230 ~tL~~c~~~y~~~~~~-~~~~~iw~~lk 256 (262)
T PF14500_consen 230 QTLKACIENYGADSLS-PHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHCCHHHHH-HHHHHHHHHHH
Confidence 77776543 4444333 35555555443
No 211
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=90.14 E-value=69 Score=41.35 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhhc----CC---CcchhHHHHHHHHHHHHh--hcCccchhchHHH-HHHHHHHhcCCchhHHHHHHHHHH
Q 000194 150 VEFQVKMALDWLR----GD---RVEYRRFAAVLILKEMAE--NASTVFNVHVAEF-VDAIWVALRDPTLAVRERAVEALR 219 (1880)
Q Consensus 150 v~~~~~~~~~~l~----~~---~~~~~R~aA~~~l~~la~--~~p~~l~~~l~~i-~~~i~~~l~D~~~~VR~aA~~al~ 219 (1880)
+...+..+...|. ++ ++.....+|+.++..+.. .-++-+..-+..+ ++.+..+++++.--.|..||+.+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 5566666666662 11 223445678888777765 3344444444444 477889999999999999999877
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc--chhhhHHHHHHHHHHHHHH
Q 000194 220 ACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN--TGEFMMSRYREVAEIVLRY 289 (1880)
Q Consensus 220 ~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~--~~~~~~~~~~~i~~~ll~~ 289 (1880)
.+....+ + +......++.+...+.++. ..++..|.+|+..++.+ ..+.+..|..++++.++.+
T Consensus 486 ~~eeDfk--d----~~ill~aye~t~ncl~nn~-lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL 550 (970)
T COG5656 486 TIEEDFK--D----NGILLEAYENTHNCLKNNH-LPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL 550 (970)
T ss_pred HHHHhcc--c----chHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh
Confidence 6633222 1 1234566777777777754 45566677789888873 3345556666666666653
No 212
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=90.05 E-value=13 Score=42.79 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000194 1611 GPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1880)
Q Consensus 1611 ~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~ 1690 (1880)
..+...+..+..+...|+ ..+|+..+++++..... .....+.++.+|......
T Consensus 31 ~~~~~~~~~g~~~~~~~~---~~~A~~~~~~~~~~~p~-------------------~~~~~~a~~~la~~~~~~----- 83 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGD---YTEAIKYFEALESRYPF-------------------SPYAEQAQLDLAYAYYKS----- 83 (235)
T ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------------chhHHHHHHHHHHHHHhc-----
Confidence 457788889998888884 68899999987754321 122334556666665543
Q ss_pred CCCHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1691 DESIPEIIAAYRNATQCATKWGK---AWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k---~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
...++.+..|+.+++.+|+... +|+..|..+++.+... .........|++.|-+.+...
T Consensus 84 -~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 84 -GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV------DRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred -CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc------cCCHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999997765 6777777766542110 111234567788887777654
No 213
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.05 E-value=7.6 Score=48.66 Aligned_cols=140 Identities=21% Similarity=0.208 Sum_probs=91.7
Q ss_pred CchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH
Q 000194 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1880)
Q Consensus 478 ~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1880)
+++.+.+=+.-|+++.. |-.+ .. -..+..++++++-..|-+-...|+.++.-... ..++.++..+.
T Consensus 278 Gpk~islFl~kls~l~p-~i~l-rq-~~~~~~LLdses~tlRc~~~EicaN~V~~~~~-----------d~qm~e~~~~~ 343 (1128)
T COG5098 278 GPKDISLFLNKLSELSP-GIML-RQ-YEHFDELLDSESFTLRCCFLEICANLVEHFKK-----------DGQMVEHYKQK 343 (1128)
T ss_pred ChHHHHHHHHHHhhcCc-hHHH-HH-HHHHHHHhcccchhHHHHHHHHHHHHHHHHhc-----------chhhHhhHHHH
Confidence 44445555555665522 2111 11 13456889998999998888888888753221 00223334555
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch---hh-ccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD---FL-AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY 633 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~---~L-~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1880)
+..+++-|.+ -+.|..|.+|..+++.+.. -||. +. ...++.+....+++|.+..||+.|++++..|...+|-.
T Consensus 344 ~~~Lv~ll~E-Rl~D~~py~RtKalqv~~k--ifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 344 LNDLVGLLVE-RLSDTYPYTRTKALQVLEK--IFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred HHHHHHHHHH-HhhccchHHHHHHHHHHHH--HHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChh
Confidence 6666654444 4689999999999887741 2221 11 23578888899999999999999999999999999854
Q ss_pred c
Q 000194 634 V 634 (1880)
Q Consensus 634 v 634 (1880)
.
T Consensus 421 ~ 421 (1128)
T COG5098 421 S 421 (1128)
T ss_pred h
Confidence 3
No 214
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=90.01 E-value=70 Score=41.27 Aligned_cols=125 Identities=12% Similarity=0.038 Sum_probs=82.6
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh--Ccccc
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLI 677 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~ 677 (1880)
++..+...++++.--.|..|++.+.++....+... .+-+......+.+++ ++-.++.+|+.++..++.+ ..+.+
T Consensus 461 iv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~--ill~aye~t~ncl~n--n~lpv~ieAalAlq~fi~~~q~h~k~ 536 (970)
T COG5656 461 IVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG--ILLEAYENTHNCLKN--NHLPVMIEAALALQFFIFNEQSHEKF 536 (970)
T ss_pred HHHHhhHhhcCcccchHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHhc--CCcchhhhHHHHHHHHHhchhhhHHH
Confidence 34555566788887788999999999866555321 122222223333444 3556678888899888865 34567
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~ 736 (1880)
..+++++|+-++..-++- +.++.+ .++..+.....+++.||.++++..+.+
T Consensus 537 sahVp~tmekLLsLSn~f-----eiD~LS---~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 537 SAHVPETMEKLLSLSNTF-----EIDPLS---MVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HhhhhHHHHHHHHhcccc-----cchHHH---HHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 788999999888865542 333333 345556677788888988888777766
No 215
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=89.85 E-value=6.8 Score=41.06 Aligned_cols=111 Identities=13% Similarity=-0.065 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCc
Q 000194 1572 WLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651 (1880)
Q Consensus 1572 ~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~ 1651 (1880)
|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.- .. .
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~---~~~A~~~y~~Al~l-~p--~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW----------SWRAHIALAGTWMMLKE---YTTAINFYGHALML-DA--S 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhc-CC--C
Confidence 556678888999999999999998887653 47788889999999994 68899999887642 11 0
Q ss_pred cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
...-.-.++.|+..+|+ .++.+..|..|++.+|+....|..-+....
T Consensus 91 ------------~~~a~~~lg~~l~~~g~-------------~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 ------------HPEPVYQTGVCLKMMGE-------------PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred ------------CcHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 01112234555555444 578899999999999999999976665543
No 216
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=89.71 E-value=18 Score=45.19 Aligned_cols=238 Identities=11% Similarity=0.105 Sum_probs=127.4
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH-HHHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCCc
Q 000194 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVS-KFSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMT 146 (1880)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~-~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~~ 146 (1880)
.+..++..+++|+|+++|..--..+-.+.+...+. ...++ .+.+.+.+.+.......-+...-+.+|.+... .-...
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~-r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL-RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 46777888999999999985555555544322121 22232 22333443333233445566677778877764 22345
Q ss_pred hhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q 000194 147 ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 147 ~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1880)
.++..+..+.+++......-......=..++..+.+..|+...+.+..++. .|.. .++.-.| -.|+.+.+++.
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk-~WP~-t~s~Kev-----~FL~el~~il~ 284 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLK-HWPK-TNSQKEV-----LFLNELEEILE 284 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHH-HS-S-S-HHHHH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-hCCC-CCchhHH-----HHHHHHHHHHH
Confidence 667777777777766544444444444555566666677665544444332 2332 2222111 22333333333
Q ss_pred hhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-----hcchhHHHHHH
Q 000194 227 KRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-----EHRDRLVRLSI 301 (1880)
Q Consensus 227 ~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-----~~~~~~Vr~~~ 301 (1880)
.-++.........++..+..++.++. ..+...|+...+.= .--..+..+-..+++.++..+ +|=+..||..+
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~h-~qVAErAl~~w~n~--~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a 361 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSPH-FQVAERALYFWNNE--YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLA 361 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHGGGGSH--HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHCCH--HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 22333445566778888888888875 56666666543210 000122223333444444443 34588999999
Q ss_pred HHHhHhHhhhChhhHH
Q 000194 302 TSLLPRIAHFLRDRFV 317 (1880)
Q Consensus 302 ~~~i~~la~~~~~~f~ 317 (1880)
..++..+-..+++-|-
T Consensus 362 ~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 362 QNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHhCHHHHH
Confidence 9999999998887664
No 217
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.63 E-value=7.5 Score=48.89 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=107.6
Q ss_pred HHHHHHhCCCCHhHHHHHHHHHHhhhcCC-cccccHHHHHHHH---HHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc
Q 000194 602 SAIFAALNDEDFDVREYAISVAGRLSEKN-PAYVLPALRRHLI---QLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~-p~~v~p~l~~~l~---~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
+.|+.+|.-.+.+||..|..++-.+...- |..-.......+. ..+..|..+ +-+.+|..|...+..+....=..+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d-~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLED-PYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHc
Confidence 34566677777888888888776554432 2211111222221 133444445 567889888888777776543333
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
.| .|+.-++.++-++...+..++|+..++.++..++.+ ...-+-+.+++|.+-..|+|. +..+|-+++.-|..+
T Consensus 256 P~---~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~-se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PP---TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDN-SEKVRVAFVDMLLKI 329 (1005)
T ss_pred CH---HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhcc-chhHHHHHHHHHHHH
Confidence 33 445555555544322234668888999999888653 455677889999888899987 577898888777765
Q ss_pred HhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHH
Q 000194 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR 792 (1880)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~ 792 (1880)
-..-- ++.+... -++.++..|..++.+..|+
T Consensus 330 k~vra--~~f~~I~--~~d~~l~~L~~d~~~v~rr 360 (1005)
T KOG1949|consen 330 KAVRA--AKFWKIC--PMDHILVRLETDSRPVSRR 360 (1005)
T ss_pred Hhhhh--hhhhccc--cHHHHHHHHhccccHHHHH
Confidence 32221 1222222 2566677776665444444
No 218
>PF05536 Neurochondrin: Neurochondrin
Probab=89.46 E-value=80 Score=41.11 Aligned_cols=244 Identities=14% Similarity=0.087 Sum_probs=133.3
Q ss_pred CCHHHHHHHHHHHcCCCCchhhHHHH-HHHHHHHHHhhhChHHH--HHHHHHHH-HHHHhhhcCC----C---hhhhhhH
Q 000194 21 GSLDALNRILADLCTHGNPKEGASLA-LRKHIEEQARDLGGEAF--SRFMDQLY-DRISGLLESN----D---AAENLGA 89 (1880)
Q Consensus 21 ~~~~~~~~l~~~l~s~~~~~~~aa~~-l~~~v~~~~~~~~~~~~--~~~~~~l~-~~i~~l~~s~----~---~~~r~~~ 89 (1880)
..++.+.+.++-|+++.++.+=|+.- +.+++ ..-+.... .+.++.+- +.+..|+++. + ...+--|
T Consensus 2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~----~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLL----DADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred CchHHHHHHHHHhccCCcHHHHHHHHHHHHcC----CCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 35677999999999987444424322 23333 22111111 12333332 2233455541 1 2223335
Q ss_pred HHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHHHHHhhhcCCCcc
Q 000194 90 LRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVE 167 (1880)
Q Consensus 90 i~ai~~Li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~ 167 (1880)
+..+.++...+.-. .+.++.+...++ .++....+.++...+.++|..++.++.+ ...+++. -++.+.+.+.. .+
T Consensus 78 vsvL~~f~~~~~~a~~~~~~~~IP~Ll-e~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~--~~ 153 (543)
T PF05536_consen 78 VSVLAAFCRDPELASSPQMVSRIPLLL-EILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPN--QS 153 (543)
T ss_pred HHHHHHHcCChhhhcCHHHHHHHHHHH-HHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHh--Cc
Confidence 55555554422111 233444444444 4443343458999999999999865321 1122222 34455555443 33
Q ss_pred hhHHHHHHHHHHHHhhcCc-c---chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh--hchhhHHHHHHHHH
Q 000194 168 YRRFAAVLILKEMAENAST-V---FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK--RETRWRVQWYYRMF 241 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~-~---l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~--r~~~~~~~~~~~~l 241 (1880)
.....|+.+|..+...... . -...+..+++.+-..+...+...+-..++-|..++..... ......+.|...+.
T Consensus 154 ~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~ 233 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLR 233 (543)
T ss_pred chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHH
Confidence 4456677777766655442 2 2345566777676767666666666666666666543310 01124567988888
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000194 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1880)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1880)
..+..-+.+.-....|..++.+...+++..|
T Consensus 234 ~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 234 KGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 8887777766556789999999999988544
No 219
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=89.39 E-value=1.2 Score=41.65 Aligned_cols=81 Identities=12% Similarity=0.253 Sum_probs=55.7
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000194 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1880)
.|+|++|+..|++.....+...+ ......+-.|+..+|+|+......+.. ..++ ......-+.+.+.+.+|+|+.-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~-~~~~~~la~~~~~~~~y~~A~~~~~~~--~~~~-~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN-SAYLYNLAQCYFQQGKYEEAIELLQKL--KLDP-SNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH-HHHHHHHHHHHHHTTHHHHHHHHHHCH--THHH-CHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChh-HHHHHHHHHHHHHCCCHHHHHHHHHHh--CCCC-CCHHHHHHHHHHHHHhCCHHHH
Confidence 47899999999998876553211 345566889999999999888887651 1111 1124445779999999999987
Q ss_pred HHHHh
Q 000194 1447 AEYVS 1451 (1880)
Q Consensus 1447 ~~~~~ 1451 (1880)
.+.+.
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76554
No 220
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.34 E-value=5 Score=53.14 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=86.3
Q ss_pred HHHHHHHHhhhcCC----ChhhhhhHHHHHhHhhccccCcc----hhHHHHHHHHHHhhccc---CCChHHHHHHHHHHH
Q 000194 68 DQLYDRISGLLESN----DAAENLGALRAIDELIDVALGEN----ASKVSKFSNYMRTVFEV---KRDREILVLASKVLG 136 (1880)
Q Consensus 68 ~~l~~~i~~l~~s~----~~~~r~~~i~ai~~Li~~~~~~~----~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~l~ 136 (1880)
.++.+.+++|++++ +..-+.++++++.+++.....+. ...+..+.+||...+.. ..|.+.+-..-++||
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 34566677787753 44567889999999986422222 12234566666655542 356777788888998
Q ss_pred HHhhhCCCCchhHHHHHHHHHHhhhc--CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHH
Q 000194 137 HLARAGGAMTADEVEFQVKMALDWLR--GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1880)
Q Consensus 137 ~L~~~~g~~~~~~v~~~~~~~~~~l~--~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA 214 (1880)
.+... .. ++.+..++. ...+...|.+|+.+|+-++..+|....+.+-+|+- =.+.+++||-+|
T Consensus 472 N~g~~---~~-------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-----n~~e~~EvRiaA 536 (574)
T smart00638 472 NAGHP---SS-------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-----NRAEPPEVRMAA 536 (574)
T ss_pred ccCCh---hH-------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-----CCCCChHHHHHH
Confidence 76543 11 223333333 23455789999999999999999865544433331 124467899999
Q ss_pred HHHHH
Q 000194 215 VEALR 219 (1880)
Q Consensus 215 ~~al~ 219 (1880)
..++-
T Consensus 537 ~~~lm 541 (574)
T smart00638 537 VLVLM 541 (574)
T ss_pred HHHHH
Confidence 88764
No 221
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=89.30 E-value=5.1 Score=48.63 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=91.3
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC---CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHH
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN---DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~---D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l 646 (1880)
+.+.+...|..++.+|..+....+.+ |-++.++..... +.+..+-...++.+..|..+.--.+.|++..++...+
T Consensus 187 ~~~~~~~~r~~aL~sL~tD~gl~~Ll--Pyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vl 264 (343)
T cd08050 187 LVGSNEEKRREALQSLRTDPGLQQLL--PYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVL 264 (343)
T ss_pred HhCCCHHHHHHHHHHhccCCCchhhh--hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHH
Confidence 34577889999999997544332211 222333322111 1145555667777777777665567899998887777
Q ss_pred HHHhc--------CCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH
Q 000194 647 TYLEQ--------SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1880)
Q Consensus 647 ~~l~~--------~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1880)
+.+-. .++.+..|+.|+.+++.+++.++....-.-+.|+..+.+.+.++.. .....-+++.+++.+
T Consensus 265 tclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~---~~~~~YGAi~GL~~l 338 (343)
T cd08050 265 TCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKK---PLTTHYGAIVGLSAL 338 (343)
T ss_pred HHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCC---CcchhhHHHHHHHHh
Confidence 65521 1134688999999999999998776666667788899999887631 333355666666554
No 222
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=89.26 E-value=25 Score=39.56 Aligned_cols=160 Identities=14% Similarity=0.113 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++....+. .+......+.++...|+ ..+|+..++..+....
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~~ 130 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----------NGDVLNNYGTFLCQQGK---YEQAMQQFEQAIEDPL 130 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHccc---HHHHHHHHHHHHhccc
Confidence 4678888999999999999999999988876542 35666777888888884 6789998888764211
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
. ......+..+|.-.... ...++....|.++.+.+|+...+|..+|......
T Consensus 131 ~--------------------~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 182 (234)
T TIGR02521 131 Y--------------------PQPARSLENAGLCALKA------GDFDKAEKYLTRALQIDPQRPESLLELAELYYLR-- 182 (234)
T ss_pred c--------------------ccchHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc--
Confidence 0 00111222233332222 2357788999999999999888998888775541
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHH
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQ 1786 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~ 1786 (1880)
+ -...|+..|-+++... ........-+..+....|+..+..
T Consensus 183 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 183 -----G-------QYKDARAYLERYQQTY------NQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred -----C-------CHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHH
Confidence 1 1235566666665542 122333344445555656654433
No 223
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=89.01 E-value=24 Score=41.88 Aligned_cols=230 Identities=10% Similarity=0.050 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhc-cc--cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHh
Q 000194 63 FSRFMDQLYDRISGLLESNDAAENLGALRAIDELID-VA--LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLA 139 (1880)
Q Consensus 63 ~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~-~~--~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~ 139 (1880)
+++|.+++.+.+..+=+.++|.+-.+.+.=+...+. .. ...-+.+ ..+..-|.+|+.|.--..|=..|-++...+-
T Consensus 5 ~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k-~~v~krLaqCL~P~LPsGVH~KaLevY~~IF 83 (307)
T PF04118_consen 5 YKKYNAEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHK-LQVSKRLAQCLNPALPSGVHQKALEVYEYIF 83 (307)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 344444444444433344555554444444444443 11 0111111 2345556666655434566666777776665
Q ss_pred hhCCC-CchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHH
Q 000194 140 RAGGA-MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEAL 218 (1880)
Q Consensus 140 ~~~g~-~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al 218 (1880)
+.-|. ...+-+.-....+++.++ ...-..|-.-+-++...-...+..+.|.+..++-.++.||-|...++-+.+...+
T Consensus 84 ~~ig~~~L~~dl~i~~~GLfpl~~-~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll 162 (307)
T PF04118_consen 84 ERIGPDGLAQDLPIYSPGLFPLFS-YASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLL 162 (307)
T ss_pred HhcCHHHHHhhcHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHH
Confidence 54221 112222223344444442 1222334444444444444566688999999999999999999998988888777
Q ss_pred HHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch------------hhhHHHHHHHHHHH
Q 000194 219 RACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG------------EFMMSRYREVAEIV 286 (1880)
Q Consensus 219 ~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~------------~~~~~~~~~i~~~l 286 (1880)
..+...+. ...++..+.-.+.. + .+.|.+|+..+..-+.... ..+.+.-+=++..+
T Consensus 163 ~~l~~~v~------~~~F~~~lwl~ii~---s---p~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al 230 (307)
T PF04118_consen 163 DKLKEAVG------DKYFWQCLWLCIIT---S---PSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRAL 230 (307)
T ss_pred HHHHHhcC------hhHHHHHHHHHHhc---C---cchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHH
Confidence 66654433 12455555555443 2 3668887775543322111 11222233345566
Q ss_pred HHHhhcchhHHHHHHHHHhH
Q 000194 287 LRYLEHRDRLVRLSITSLLP 306 (1880)
Q Consensus 287 l~~~~~~~~~Vr~~~~~~i~ 306 (1880)
...+++.+..|++.+++.+=
T Consensus 231 ~~~L~D~~iLVqR~~LDlLl 250 (307)
T PF04118_consen 231 CACLEDENILVQRGFLDLLL 250 (307)
T ss_pred HHHhCCchHHHHHHHHHHHH
Confidence 66666777777766655443
No 224
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.83 E-value=1e+02 Score=41.40 Aligned_cols=112 Identities=14% Similarity=0.054 Sum_probs=64.2
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhHhHhhh----ChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhh
Q 000194 283 AEIVLRYLEHRDRLVRLSITSLLPRIAHF----LRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFH 358 (1880)
Q Consensus 283 ~~~ll~~~~~~~~~Vr~~~~~~i~~la~~----~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p 358 (1880)
.-.|+..+-+.++.|+..+..++-++|.. .+..|++.-.+-++..+-..|+....-..+-..+.-+....+.+..|
T Consensus 591 ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~~s~~~~~Vl~vVl~~s~~~~i~ 670 (1014)
T KOG4524|consen 591 LYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSGMSPRVPDVLMVVLQYSDYGTIP 670 (1014)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCCCCchhHHHHHHHhhcCCCCchh
Confidence 33455555678888998888888777742 24555543333344444444442222233444455566666667789
Q ss_pred hhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhC
Q 000194 359 YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1880)
Q Consensus 359 ~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g 394 (1880)
+++++++.+...+-......+..-+..+-.+.+..|
T Consensus 671 ~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~ 706 (1014)
T KOG4524|consen 671 NLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMK 706 (1014)
T ss_pred hHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence 999999999988855444333333333333444444
No 225
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.62 E-value=2.8 Score=50.26 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=97.9
Q ss_pred HHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh-----hhccC---CCC-------
Q 000194 1672 ARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH-----YTLRG---LPS------- 1736 (1880)
Q Consensus 1672 a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~-----~~~~~---~~~------- 1736 (1880)
+-+..+.|.=-.++. +...++.+|+.|++++|..++||+.+++.+.-+=-+ |-++. .|.
T Consensus 364 ~~aWTLmGHEyvEmK------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~a 437 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMK------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVA 437 (559)
T ss_pred hHHHHHhhHHHHHhc------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHH
Confidence 445677777666663 347789999999999999999998877665421100 00000 011
Q ss_pred -----chhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHh
Q 000194 1737 -----VAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIAR 1811 (1880)
Q Consensus 1737 -----~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiaR 1811 (1880)
....-...||+||-+++.++. ..-.-+.||-.|.-+.++..+....+++++... ...
T Consensus 438 LG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-----------~~e- 499 (559)
T KOG1155|consen 438 LGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-----------ELE- 499 (559)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------Hhh-
Confidence 123456899999999998862 222346888888888888777666666665321 000
Q ss_pred ccCCChhHHH---HHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 000194 1812 IHSNNRAVRE---LIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQH 1867 (1880)
Q Consensus 1812 i~~~~~~v~~---~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R~~~a~~Il~~~~~~ 1867 (1880)
+..++...+ .+..-- .=.+++--|..|...+..- +++ .+-|+.++..++++
T Consensus 500 -g~~~~~t~ka~~fLA~~f-~k~~~~~~As~Ya~~~~~~--~~e-~eeak~LlReir~~ 553 (559)
T KOG1155|consen 500 -GEIDDETIKARLFLAEYF-KKMKDFDEASYYATLVLKG--ETE-CEEAKALLREIRKI 553 (559)
T ss_pred -cccchHHHHHHHHHHHHH-HhhcchHHHHHHHHHHhcC--Cch-HHHHHHHHHHHHHh
Confidence 111111111 111111 1224556677777665544 333 44477788777764
No 226
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.51 E-value=20 Score=40.55 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000194 191 HVAEFVDAIWVALRD-PTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1880)
Q Consensus 191 ~l~~i~~~i~~~l~D-~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1880)
.+.-.++.+..+|.| .+...|+||...|+.=..+ .+..+.+..-+-+++.+.+++ -+....-+.+...|+.
T Consensus 194 ELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGl-----hQLvPYFi~f~~eqit~Nl~n---l~~LtTv~~m~~sLL~ 265 (450)
T COG5095 194 ELQMYFDKVISALLDESDEQTRDAALESLRNDSGL-----HQLVPYFIHFFNEQITKNLKN---LEKLTTVVMMYSSLLK 265 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-----HHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHhc
Confidence 344455566666654 4578899999877631110 123445555555666666654 2445555567778888
Q ss_pred cchhhhHHHHHHHHHHHHHHh----------hcchhHHHHHHHHHhHhHhhhChhhHHHHHH---HHHHHHHHH-hhcCC
Q 000194 270 NTGEFMMSRYREVAEIVLRYL----------EHRDRLVRLSITSLLPRIAHFLRDRFVTNYL---KICMNHILT-VLRIP 335 (1880)
Q Consensus 270 ~~~~~~~~~~~~i~~~ll~~~----------~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl---~~~~~~Ll~-~L~~~ 335 (1880)
+..-|+.||+.++++.++.++ +|..-.+|..+..+++.+.. .|...|- +++...++. .|+++
T Consensus 266 N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~----~F~~~YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 266 NKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFS----NFSSSYKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred CCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHh----hhhHhhhhhchHHHHHHHHHHHhcc
Confidence 877889999999888777654 12223478888888877664 3544342 455555544 34444
Q ss_pred CCc---chHHHHHHHHH
Q 000194 336 AER---DSGFIALGEMA 349 (1880)
Q Consensus 336 ~~r---~~a~~alg~la 349 (1880)
+.- -.|+.+++.+.
T Consensus 342 k~~sT~YGalkgls~l~ 358 (450)
T COG5095 342 KTESTQYGALKGLSILS 358 (450)
T ss_pred cccchhhhhhhhhhhhc
Confidence 422 34566665554
No 227
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.24 E-value=10 Score=48.06 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 000194 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1880)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~ 759 (1880)
++.+++..++.....+ +..|+-.++.-+..+....++--...++.+...+...+.|. .+.+|..|+.+|+.+-.
T Consensus 82 lV~~~f~hlLRg~Esk-----dk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESK-----DKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHHHHhcccCc-----chhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhc
Confidence 4566666777766543 67788777766666655444444555667777777778876 46799999999998764
Q ss_pred hcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 760 ~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
..+. + --++...+..+++++.+++||++++..|.
T Consensus 156 d~~d---e---e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 156 DPKD---E---ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred CCCC---C---cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 3332 2 22578888888889999999999987764
No 228
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.02 E-value=56 Score=41.72 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000194 1368 QRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1880)
Q Consensus 1368 g~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1880)
-+|.+|+.+|++......|.. + .....-|.+.+|++|+.-....+..-.. + -+|.+-..++--..|||.+==.+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~--w-vl~q~GrayFEl~~Y~~a~~~F~~~r~~-~-p~rv~~meiyST~LWHLq~~v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTG--W-VLSQLGRAYFELIEYDQAERIFSLVRRI-E-PYRVKGMEIYSTTLWHLQDEVAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCch--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-cccccchhHHHHHHHHHHhhHHH
Confidence 358999999998333222210 0 1122234456777776544433321100 1 12223334667799999764333
No 229
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.90 E-value=8.1 Score=50.93 Aligned_cols=156 Identities=19% Similarity=0.123 Sum_probs=91.5
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHH-HHHHHHhhcccC--CChHHHHHHHHHHHHHhhhCCCCch
Q 000194 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSK-FSNYMRTVFEVK--RDREILVLASKVLGHLARAGGAMTA 147 (1880)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~-~~~~L~~~l~~~--~d~~v~~~aa~~l~~L~~~~g~~~~ 147 (1880)
+..+.+|++|+-.+-|--=+.--..++.++..-....+.. -..|...++.++ -+.+-+..||=+|.-++..-..-+.
T Consensus 514 FPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~ 593 (1387)
T KOG1517|consen 514 FPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQK 593 (1387)
T ss_pred HHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHH
Confidence 4556688888766656422222222333321110111111 122433444331 1357788888888888774111122
Q ss_pred hHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 148 DEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 148 ~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
..++ .++..|++.|.++..+-.|+=.+.+|+.|-++-+. .....=..-.+.+...|+||-++||-||.-||+.++...
T Consensus 594 acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 594 ACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 2222 36777888886654567788888888888776443 222222345577888999999999999999999998754
Q ss_pred h
Q 000194 226 E 226 (1880)
Q Consensus 226 ~ 226 (1880)
+
T Consensus 674 ~ 674 (1387)
T KOG1517|consen 674 S 674 (1387)
T ss_pred c
Confidence 4
No 230
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=87.56 E-value=38 Score=43.78 Aligned_cols=160 Identities=15% Similarity=0.172 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh-hhh-hhhHHHHHHhhcCCCc
Q 000194 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD-EHM-HLLLPALIRLFKVDAP 1042 (1880)
Q Consensus 965 ~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~-~~~-~~ilp~l~~~l~~~~~ 1042 (1880)
.+++=.+.|..-++.+. +...++|.+...+++.+ ......+++.+..+.+.++ ..+ ..|+|.|..++-....
T Consensus 369 ~i~e~mdlL~~Kt~~e~--~~~~IlplL~~S~~~~~----~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 369 FILENMDLLKEKTPPEE--VKEKILPLLYRSLEDSD----VQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred hHHhhHHHHHhhCChHH--HHHHHHHHHHHHhcCcc----hhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 34444444455444432 34678999999997643 3333445555544455444 112 4578888888655567
Q ss_pred HHHHHHHHHHHHhhcccccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH-hc-ccccc--chhHHHHHHHhCC
Q 000194 1043 VDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHA-LG-EDFTI--FIPSIHKLLLKHR 1118 (1880)
Q Consensus 1043 ~~vr~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~-~g-~~f~~--fip~i~~~l~~~~ 1118 (1880)
..+|..++-+++.+++..|- .-+...+.++.+.....++++.-..+.+.-.++.. .+ .++.. -+|.+........
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~-~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDK-AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 88999999999999866552 22445566777888888888877776666555554 22 35443 3688888888877
Q ss_pred CCchhHHHHHHHH
Q 000194 1119 LRHKEFEEIEGRL 1131 (1880)
Q Consensus 1119 ~~~~~~~~~~~~~ 1131 (1880)
.+-.+|..++..+
T Consensus 522 L~~~Qy~~~m~~i 534 (700)
T KOG2137|consen 522 LNGEQYNKYMSEI 534 (700)
T ss_pred ccHHHHHHHHHHH
Confidence 8888888776544
No 231
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=87.56 E-value=0.82 Score=36.09 Aligned_cols=40 Identities=30% Similarity=0.423 Sum_probs=32.1
Q ss_pred HHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHH
Q 000194 176 ILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEA 217 (1880)
Q Consensus 176 ~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~a 217 (1880)
++..+.+..|+.+.. +.+...|...+.|+++.||+||.+.
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 456677777876643 3788888899999999999999875
No 232
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.54 E-value=11 Score=47.16 Aligned_cols=204 Identities=14% Similarity=0.186 Sum_probs=116.3
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc---
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--- 674 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--- 674 (1880)
..++..|+..++.+++.-|.....++.++-...+. ..+.+|+.+...+...-+.......-.+.++++|.++....
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~-~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPN-LRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TT-THHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence 35788888899999999999999999997766654 34666776666555443331333345678888888886432
Q ss_pred ------------------ccccCchHHHHHHHHHHhccCCC-------------CCCChhHHHHHHHHHHHHHHhcC-Cc
Q 000194 675 ------------------RLIRPYIAPIHKALVARLLEGTG-------------INANNGIISGVLVTVGDLARVGG-FG 722 (1880)
Q Consensus 675 ------------------~~~~py~~~il~~ll~~l~~~~~-------------~~~~~~v~~~~~~~l~~La~~~g-~~ 722 (1880)
+.+..|.+++...+...+..+.. +..++.-....+.-++.+....+ .+
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~ 290 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE 290 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH
Confidence 22334555666655555543200 00011111122333444444443 46
Q ss_pred hhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHH--HHHhhcCcccccCCcchHHHHHHHHHh----cCCCCHHHHHHHHH
Q 000194 723 MRQYISELMPLIVEALLDGAAVTKREVAVSTLG--QVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREVLK 796 (1880)
Q Consensus 723 ~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg--~l~~~~~~~i~p~~~~p~ll~~Ll~~L----~~~~~~~vr~~~l~ 796 (1880)
+.+....+...+..++... +..+-+.|+..+. .++.. +..+ ...+++.+...| ++.-+..||..+..
T Consensus 291 f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~l----i~~~--~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~ 363 (409)
T PF01603_consen 291 FQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSL----ISQN--SRVILPIIFPALYRNSKNHWNQTVRNLAQN 363 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHH----HHCT--HHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHH----HHhC--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777888888887754 3555555544332 11111 1111 124555555555 33336789999999
Q ss_pred HHHHHcccCccch
Q 000194 797 VLGIMGALDPHAH 809 (1880)
Q Consensus 797 ~lg~lgaldp~~~ 809 (1880)
++..+.-+||-.+
T Consensus 364 vl~~l~~~d~~lf 376 (409)
T PF01603_consen 364 VLKILMEMDPKLF 376 (409)
T ss_dssp HHHHHHTTSHHHH
T ss_pred HHHHHHHhCHHHH
Confidence 9999988888654
No 233
>PRK12370 invasion protein regulator; Provisional
Probab=87.44 E-value=1.1e+02 Score=40.29 Aligned_cols=193 Identities=10% Similarity=-0.015 Sum_probs=103.9
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc---C---CcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000194 1584 RISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL---G---EDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1880)
Q Consensus 1584 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~---g---~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~ 1657 (1880)
.+..|...+.++...+|. .+......+.+.+.. | ...+..+|+..+++.+.- . +
T Consensus 276 ~~~~A~~~~~~Al~ldP~----------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-d--P------- 335 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN----------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-D--H------- 335 (553)
T ss_pred HHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-C--C-------
Confidence 466788888888877653 233222223222211 1 111346788877775532 1 0
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCc
Q 000194 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSV 1737 (1880)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~ 1737 (1880)
..+.++..+|.-.... ...++....|++|++++|+...+|+..|......
T Consensus 336 ------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~------------ 385 (553)
T PRK12370 336 ------------NNPQALGLLGLINTIH------SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA------------ 385 (553)
T ss_pred ------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------------
Confidence 1233444555544332 3468899999999999999999999888765431
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh-hhH-HHHHHHHHHhccCC
Q 000194 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI-NTW-LVVLPQIIARIHSN 1815 (1880)
Q Consensus 1738 ~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~-~~w-l~~ipQLiaRi~~~ 1815 (1880)
.....|+..|-+++.+++ .+..-... ++.+.+..|..++....+++.+...|+ ... +..+-.+..+.+..
T Consensus 386 --G~~~eAi~~~~~Al~l~P-----~~~~~~~~-~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 386 --GQLEEALQTINECLKLDP-----TRAAAGIT-KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred --CCHHHHHHHHHHHHhcCC-----CChhhHHH-HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 123468888888888753 22211112 233455567666666666665544332 111 22333334444443
Q ss_pred ChhHHHHHHHHHHHHHhhCchhhH
Q 000194 1816 NRAVRELIQSLLVRIGQSHPQALM 1839 (1880)
Q Consensus 1816 ~~~v~~~l~~lL~~i~~~hPqa~l 1839 (1880)
++ -...+.++....|.+..
T Consensus 458 ~e-----A~~~~~~~~~~~~~~~~ 476 (553)
T PRK12370 458 EL-----ARKLTKEISTQEITGLI 476 (553)
T ss_pred HH-----HHHHHHHhhhccchhHH
Confidence 32 11123445566666443
No 234
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=87.31 E-value=0.97 Score=42.37 Aligned_cols=56 Identities=21% Similarity=0.172 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 167 EYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 167 ~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
..+||+|++.|+++....|..+-+++++++..+-...+| ...|+..+-++++.+-+
T Consensus 3 ~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 3 LRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp -HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999998888888 45688888888887644
No 235
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=87.12 E-value=5.7 Score=42.19 Aligned_cols=94 Identities=17% Similarity=0.240 Sum_probs=68.5
Q ss_pred cchhchHHHHHHHHHHhc-CCc-----------------hhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhc
Q 000194 187 VFNVHVAEFVDAIWVALR-DPT-----------------LAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1880)
Q Consensus 187 ~l~~~l~~i~~~i~~~l~-D~~-----------------~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l 248 (1880)
.+.|+++.++|.++.... +++ -.+|.+|.+++..+++....+- ....+++.+..||
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~------~~~~~~~~v~~GL 75 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI------DISEFLDRVEAGL 75 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHhhc
Confidence 467889999999987664 332 4789999999999887432221 2566788999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHH
Q 000194 249 GRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLR 288 (1880)
Q Consensus 249 ~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~ 288 (1880)
++. .+++.-+..++.-++...++.+.++++.+++.+-.
T Consensus 76 ~D~--~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~ 113 (169)
T PF08623_consen 76 KDE--HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRK 113 (169)
T ss_dssp SS---HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 983 68888888899999888887777777776664443
No 236
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=86.93 E-value=14 Score=45.89 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=89.1
Q ss_pred CChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCC---CChhHHHHHHHHHHHHHHhcCCchhhhHHhH
Q 000194 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGIN---ANNGIISGVLVTVGDLARVGGFGMRQYISEL 730 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~---~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l 730 (1880)
.+...|.+|+..| ....+ +..+++.++..+.+....+ .+-.+..+++..+-.|...-.-.+.||+.++
T Consensus 219 ~~~~~r~eAL~sL---~TDsG------L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L 289 (576)
T KOG2549|consen 219 SDEPLRQEALQSL---ETDSG------LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQL 289 (576)
T ss_pred CCHHHHHHHHHhh---ccCcc------HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 4566677776654 22222 2333344444444331111 1222333334444444444445789999999
Q ss_pred HHHHHHHHhc---------CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 000194 731 MPLIVEALLD---------GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGI 800 (1880)
Q Consensus 731 ~p~l~~~l~d---------~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~-~~~~vr~~~l~~lg~ 800 (1880)
+|.++.++-. .+.+..|+-|...++.++...+...+ ...|.+...+.+.+.+. .+.....-++..|..
T Consensus 290 ~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~--~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 290 VPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYN--NLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred hhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 9999998731 23467899999999999998886532 24578899999888655 578899999999988
Q ss_pred Hcc
Q 000194 801 MGA 803 (1880)
Q Consensus 801 lga 803 (1880)
+|.
T Consensus 368 lg~ 370 (576)
T KOG2549|consen 368 LGH 370 (576)
T ss_pred hhh
Confidence 885
No 237
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=86.80 E-value=1.3e+02 Score=40.43 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH-----HHHHHHHHhccC
Q 000194 1744 HAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL-----VVLPQIIARIHS 1814 (1880)
Q Consensus 1744 ~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl-----~~ipQLiaRi~~ 1814 (1880)
.||+.|=++++- ...++..+-+.+|--.|++-|...+..+.......-.|....+ .|+-|+...+-.
T Consensus 698 ~AIqmYe~~lkk----f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 698 LAIQMYENCLKK----FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHH----hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 677777777653 2345678889999999999998777666666666666655554 477777776643
No 238
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=86.75 E-value=34 Score=42.78 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---------CCCcchHHHHHHHH
Q 000194 278 RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---------PAERDSGFIALGEM 348 (1880)
Q Consensus 278 ~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---------~~~r~~a~~alg~l 348 (1880)
.+..++..++.+.......|+..+|+..=.++.-++-+|+..-..+.=|++..++++ +..+..-++|.|.+
T Consensus 567 FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~v 646 (1053)
T COG5101 567 FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMV 646 (1053)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHH
Confidence 345567777777777888999999999999998888888754433433444444432 12356788999999
Q ss_pred Hhhchh
Q 000194 349 AGALDG 354 (1880)
Q Consensus 349 a~~v~~ 354 (1880)
...+++
T Consensus 647 Ise~p~ 652 (1053)
T COG5101 647 ISEVPK 652 (1053)
T ss_pred Hhccch
Confidence 888876
No 239
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=86.60 E-value=9 Score=45.27 Aligned_cols=142 Identities=13% Similarity=0.171 Sum_probs=90.1
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc---------cHHHHHHHHHHHHHHhcC---CCChHhHHHHHHHH
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV---------LPALRRHLIQLLTYLEQS---SADNKCREESAKLL 666 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v---------~p~l~~~l~~~l~~l~~~---~~~~~~r~~a~~~L 666 (1880)
-+++.++..+.|.+.++|..++.++..+....|... ...+...+...+..+-.. +++...-..+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 467888888889999999999999999988777654 233444444444332111 02223334455556
Q ss_pred HHHHHhC-cccccCchH----HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcC
Q 000194 667 GCLIRNC-ERLIRPYIA----PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG 741 (1880)
Q Consensus 667 ~~l~~~~-~~~~~py~~----~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~ 741 (1880)
-.++... .+.-.++.. .+.+.+++.+..... -..+.++...+..+..+....|.....|+..++|.+.+.+++.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~-~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESS-FSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccc-cCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 6665432 111122222 222335555443210 0247788888899999999999999999999999999988865
No 240
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=86.58 E-value=21 Score=43.80 Aligned_cols=132 Identities=14% Similarity=0.131 Sum_probs=73.4
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc--CCCcchhHHHHHHHHHHHHhhcCc-----
Q 000194 114 YMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--GDRVEYRRFAAVLILKEMAENAST----- 186 (1880)
Q Consensus 114 ~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~--~~~~~~~R~aA~~~l~~la~~~p~----- 186 (1880)
|+++=+++++-...++.|+.-+-.|++.-+......+-..+...+.-.. ...+|..+.+|+.+++.++....+
T Consensus 214 YIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gv 293 (370)
T PF08506_consen 214 YIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGV 293 (370)
T ss_dssp HHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-
T ss_pred HHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCc
Confidence 6666555432245667777777777765222222222223333332211 356788999999999999865321
Q ss_pred -cchh--chHHHHH-HHHHHhc---CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCC
Q 000194 187 -VFNV--HVAEFVD-AIWVALR---DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA 252 (1880)
Q Consensus 187 -~l~~--~l~~i~~-~i~~~l~---D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~ 252 (1880)
...+ .+.+++. .|..-|. +.+|.+|-.|++.+..+-.. ...+.+..+++.+...|.+++
T Consensus 294 t~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~-------l~~~~l~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 294 TQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ-------LPKEQLLQIFPLLVNHLQSSS 359 (370)
T ss_dssp S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG-------S-HHHHHHHHHHHHHHTTSS-
T ss_pred ccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHHhCCCC
Confidence 1111 3445443 3555555 56788888888876655332 334567789999999999875
No 241
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=86.50 E-value=13 Score=44.17 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=83.5
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
..+...|..++.+..+.|+...|.+.+.+++..+|. ++.+....+-.+...| +..++...++.+...
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~----------~~~~~~~l~~~li~~~---~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD----------DPDARNALAWLLIDMG---DYDEAREALKRLLKA 209 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-----------HHHHHHHHHHHCTTC---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHH
Confidence 356889999999999999999999999999987663 4666666766676666 456666666665544
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
...++ .--..+|.++..+|+ .++.+..|.++.+.+|+....+..+|.+..
T Consensus 210 ~~~~~---------------~~~~~la~~~~~lg~-------------~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 210 APDDP---------------DLWDALAAAYLQLGR-------------YEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp -HTSC---------------CHCHHHHHHHHHHT--------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred CcCHH---------------HHHHHHHHHhccccc-------------cccccccccccccccccccccccccccccc
Confidence 32211 112346888887776 467889999999999999999888886644
No 242
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.38 E-value=38 Score=42.17 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 000194 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1880)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~ 759 (1880)
++.+++..++..+..+ +..|+-..+.-+..+..+.++--......++..+.+.+-|. ...+|..|+.+|+.+.+
T Consensus 88 ~V~~~~~h~lRg~esk-----dk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe 161 (885)
T COG5218 88 LVAGTFYHLLRGTESK-----DKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQE 161 (885)
T ss_pred HHHHHHHHHHhcccCc-----chhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHh
Confidence 4566677777776653 77888888888888877777654555566666666666665 46799999999998876
Q ss_pred hcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 760 ~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
-++.. - ..+...|..+++++++.+||+.|+--+
T Consensus 162 ~~~ne---e---n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 162 MELNE---E---NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ccCCh---H---HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 66542 1 246677778888999999999886543
No 243
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=85.70 E-value=11 Score=50.30 Aligned_cols=157 Identities=10% Similarity=0.090 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCC---CCChHHHHHHHHHH-HHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccC
Q 000194 1245 SQKHLVQSLEMAFSSP---NIPPEILATLLNLA-EFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRM 1320 (1880)
Q Consensus 1245 ~~~~l~~~l~~~l~~~---~~p~~i~q~ll~l~-efm~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~ 1320 (1880)
...++.+..++++... ..|.+-+-.++.++ .||...+- +.+|+++..++|.|.-|+..+|....-.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~La~i~~~~g~~~ea~~~l~~~~~~~----- 116 (694)
T PRK15179 47 AGRELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELF-----QVLVARALEAAHRSDEGLAVWRGIHQRF----- 116 (694)
T ss_pred HHHHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHH-----HHHHHHHHHHcCCcHHHHHHHHHHHhhC-----
Confidence 3345555666666543 34444332233322 34433222 4689999999999999999999876532
Q ss_pred CCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc----hhh-hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHh
Q 000194 1321 DANPVAVVEALIHINNQLHQHEAAVGILTYAQK----ELD-VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATL 1395 (1880)
Q Consensus 1321 ~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~----~~~-~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~ 1395 (1880)
++.....-.+..+-.+++..|.+....+..-. +.. ....+....++|++++|.++|++.+.+.++. .+...
T Consensus 117 -Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~---~~~~~ 192 (694)
T PRK15179 117 -PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF---ENGYV 192 (694)
T ss_pred -CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc---HHHHH
Confidence 34455666788889999999999887764221 111 2234556799999999999999998743332 45678
Q ss_pred hHhHHHHHhhCHHHHHHHHh
Q 000194 1396 GRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1396 g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
++=.+|..+|+-+.-....+
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQ 212 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 99999999999765544433
No 244
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=85.51 E-value=1.7e+02 Score=40.45 Aligned_cols=358 Identities=13% Similarity=0.034 Sum_probs=188.4
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hh---hhhhcHHHH
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-EL---DVQLKESWY 1364 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~---~~~~~~~~~ 1364 (1880)
..++.+..+-+.+..|+-+++..+... ++.....-.|..++...|+++.+.-.++.... .. .....+..+
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l 126 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVY 126 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 567778888899999998888766432 33355666888999999999999988875422 11 122234467
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhH--HHHHHHHHHHcC-
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEM--APMAANAAWNMG- 1441 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~--~~~~a~aaw~l~- 1441 (1880)
...|+.++|+..|++.+...++. .+....+..++...|+.+.-....+..-. .++..... .+.....-+.+.
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~---~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQT---QQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhccc
Confidence 89999999999999998765543 34455667788888888754444443221 22211110 111111111100
Q ss_pred ------ChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC--hhhhHHHHHHH-HHHhHhhhhHH
Q 000194 1442 ------EWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK--VLESYERAYSN-MVRVQQLSELE 1512 (1880)
Q Consensus 1442 ------~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~--~~esy~ray~~-l~~lq~L~ELe 1512 (1880)
++...++. ...++.++...... ....|.+++-. +..+-...+.+
T Consensus 202 ~~~~~~r~~~ad~A---------------------------l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 202 TRSEKERYAIADRA---------------------------LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred ccChhHHHHHHHHH---------------------------HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 00000000 00111111110100 11123332211 11111112333
Q ss_pred HHHH-hhcCCCCCC-chhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhh-cCCcc---cHHHHHHHHHHHHhcCChh
Q 000194 1513 EVID-YCTLPVGNP-VAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTE---DVETWLKFASLCRKSGRIS 1586 (1880)
Q Consensus 1513 E~i~-~~~~~~~~~-~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e---~~~~~lk~a~laRk~g~~~ 1586 (1880)
+++. |.+....++ .+.. ...|--.+.....+++.=...+. +++ .+|.. ....+.+++....+.|+++
T Consensus 255 eA~~~~~~ll~~~~~~P~~-----a~~~la~~yl~~g~~e~A~~~l~--~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-----AQRWVASAYLKLHQPEKAQSILT--ELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-----HHHHHHHHHHhcCCcHHHHHHHH--HHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 3332 111111110 0111 12232222222333333333222 222 22222 1456777777789999999
Q ss_pred HHHHHHHHHhcCCCCCC-----cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccc
Q 000194 1587 QARSTLVKLLQYDPETS-----HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLT 1661 (1880)
Q Consensus 1587 ~a~~~L~~l~~~~~~~~-----~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~ 1661 (1880)
.|...+.++....|... +...+......+.+-.+.++-..|+ ..+|+..+++.+.....
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~---~~eA~~~l~~al~~~P~------------- 391 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND---LPQAEMRARELAYNAPG------------- 391 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------
Confidence 99999998876554210 0000000112355667778888885 68999999987653211
Q ss_pred cccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1662 TATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1662 ~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+ ...+..+|.-.... ..+++.++.|+++.+++|+....++..|...
T Consensus 392 -----n----~~l~~~lA~l~~~~------g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 392 -----N----QGLRIDYASVLQAR------GWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred -----C----HHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 1 23344555544332 3478899999999999999999888888743
No 245
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.45 E-value=32 Score=42.27 Aligned_cols=201 Identities=12% Similarity=0.091 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHHHhhhch-h--h-HHHHHHHHH--
Q 000194 170 RFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVR--ERAVEALRACLRVIEKRET-R--W-RVQWYYRMF-- 241 (1880)
Q Consensus 170 R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR--~aA~~al~~~~~~i~~r~~-~--~-~~~~~~~~l-- 241 (1880)
|-+++..+.-.++.=.+.|.+|+++++..+|+.|..-....+ .-+..|++-+.. +..... . . ....+..++
T Consensus 113 K~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~-v~~~~~~~~lf~~~~~L~~Iie~ 191 (370)
T PF08506_consen 113 KAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSS-VAESPHHKNLFENKPHLQQIIEK 191 (370)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHH-HHTSHHHHTTT-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH-HHcchhHHHHhCCHHHHHHHHHH
Confidence 444455555455544556789999999999998864333332 223344432222 221111 0 0 122333333
Q ss_pred ---HHHH------------------hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHH-Hhh--cchhHH
Q 000194 242 ---EATQ------------------DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLR-YLE--HRDRLV 297 (1880)
Q Consensus 242 ---~~~~------------------~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~-~~~--~~~~~V 297 (1880)
|.++ +.+...+....|.||+..+..|.+.-++.+.+-+...+..++. +.. ..+..-
T Consensus 192 VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 192 VIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp THHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHH
T ss_pred hccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHH
Confidence 3221 0122222234588998899988876555455554444444443 222 234556
Q ss_pred HHHHHHHhHhHhhhChh------------hHHHHHHHHHHHHHHHhhcC-CCCcchHHHHHHHHHhhchhhhhhhhhHHH
Q 000194 298 RLSITSLLPRIAHFLRD------------RFVTNYLKICMNHILTVLRI-PAERDSGFIALGEMAGALDGELFHYLPTIT 364 (1880)
Q Consensus 298 r~~~~~~i~~la~~~~~------------~f~~~yl~~~~~~Ll~~L~~-~~~r~~a~~alg~la~~v~~~~~p~l~~i~ 364 (1880)
+.+++.+++.+|.-... .+.+-|-..++|.|..-... +-.|+.|+..+..+....++ +.+..++
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~ 348 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIF 348 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHH
Confidence 78899999999864421 12221224455555411100 11367788888887766665 4567788
Q ss_pred HHHHHhhcCC
Q 000194 365 SHLREAIAPR 374 (1880)
Q Consensus 365 ~~l~~~l~~~ 374 (1880)
+.+...|...
T Consensus 349 ~~l~~~L~~~ 358 (370)
T PF08506_consen 349 PLLVNHLQSS 358 (370)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHhCCC
Confidence 8888888543
No 246
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=85.38 E-value=4.9 Score=40.35 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=59.2
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcC
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMG 1441 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~ 1441 (1880)
.|..+|+.++|...|++.+........-....+++=.+|..||+.+.-....++.... .+.+....+..+.+.+.+.+|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 4789999999999999998754333322456788889999999998766555432211 122334455667788999999
Q ss_pred ChhhHH
Q 000194 1442 EWDQMA 1447 (1880)
Q Consensus 1442 ~Wd~~~ 1447 (1880)
+++.--
T Consensus 90 r~~eAl 95 (120)
T PF12688_consen 90 RPKEAL 95 (120)
T ss_pred CHHHHH
Confidence 987743
No 247
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.16 E-value=1.2e+02 Score=38.34 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=79.4
Q ss_pred cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1563 l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
...+++.+....-+..|=..++++.+.+....++..+|- ++.+..-++-.+...|+.+ +-+..-.++
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf----------h~~~~~~~ia~l~el~~~n---~Lf~lsh~L 304 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF----------HLPCLPLHIACLYELGKSN---KLFLLSHKL 304 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC----------CcchHHHHHHHHHHhcccc---hHHHHHHHH
Confidence 334566778888888888999999999999988877652 3455555666888888643 233333344
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+..... +|--++-.|-+-... ...+++.++|.+|+.+++....||..+|...
T Consensus 305 V~~yP~----------------------~a~sW~aVg~YYl~i------~k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 305 VDLYPS----------------------KALSWFAVGCYYLMI------GKYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred HHhCCC----------------------CCcchhhHHHHHHHh------cCcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 433211 011122233333322 2357899999999999999999999998764
Q ss_pred H
Q 000194 1723 T 1723 (1880)
Q Consensus 1723 ~ 1723 (1880)
.
T Consensus 357 a 357 (611)
T KOG1173|consen 357 A 357 (611)
T ss_pred h
Confidence 3
No 248
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.92 E-value=29 Score=48.37 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=88.3
Q ss_pred hcCCCcchhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHH
Q 000194 161 LRGDRVEYRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYY 238 (1880)
Q Consensus 161 l~~~~~~~~R~aA~~~l~~la~~--~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~ 238 (1880)
...+..|..|.+++.+++...-+ .+ ........|...+...+.|.+..||+.|+.+|.-++.--.-... .
T Consensus 1535 ~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~-------~ 1606 (1710)
T KOG1851|consen 1535 TADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFV-------S 1606 (1710)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccc-------h
Confidence 34677889999999999887654 33 45678889999999999999999999999998876542110000 1
Q ss_pred HHHHHHHhhccCC-CChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000194 239 RMFEATQDGLGRN-APVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1880)
Q Consensus 239 ~~l~~~~~~l~~~-~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la 309 (1880)
..-.....+.... .+....|||.+.+++++-..+=.+...+.+.+..+-+..++ +..+++++-.++...-
T Consensus 1607 ~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e-~~~i~~tvkktvseFr 1677 (1710)
T KOG1851|consen 1607 DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARE-SAAIKQTVKKTVSEFR 1677 (1710)
T ss_pred HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCC-chHHHHHHHHHHHHHH
Confidence 1111111222221 23567899999999998754433333444444444433333 3667777776665443
No 249
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.83 E-value=22 Score=47.05 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=89.6
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh--
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR-- 231 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~-- 231 (1880)
+..+.+|+...+-.. .. |..++..+....+.-=...+..+++.+-..-.-+++.+|..|.-+++............
T Consensus 359 ~~~i~~~i~~~~~~~-~e-a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 359 LKFIKQWIKNKKITP-LE-AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHHHcCCCCH-HH-HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 666777776543322 22 33344444444322112344444443332223346789999999998776544322211
Q ss_pred --hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000194 232 --WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1880)
Q Consensus 232 --~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la 309 (1880)
...++.+.+...+..+.... +.+.+...+.+||-+-. .-..+.+..++ ......+..+|.+++.++..++
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLGN~g~---~~~i~~l~~~l----~~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSKG-DEEEIQLYLKALGNAGH---PSSIKVLEPYL----EGAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhcC-CchheeeHHHhhhccCC---hhHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHH
Confidence 12345555555555555444 34557777777774321 11112222221 1123346789999999999988
Q ss_pred hhChhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHH
Q 000194 310 HFLRDRFVTNYLKICMNHILTVLRIP----AERDSGFIAL 345 (1880)
Q Consensus 310 ~~~~~~f~~~yl~~~~~~Ll~~L~~~----~~r~~a~~al 345 (1880)
...+.. +.+.++.+..+. ..|.+|+..|
T Consensus 509 ~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 509 KRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 766653 233344444432 2477776643
No 250
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=84.73 E-value=11 Score=46.39 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+..+++.+ ..++++.|...+.++...+ |.+.+-.||++-..++ ..+|++.+++.+.+..
T Consensus 172 v~~Ll~~l~---~t~~~~~ai~lle~L~~~~-------------pev~~~LA~v~l~~~~---E~~AI~ll~~aL~~~p- 231 (395)
T PF09295_consen 172 VDTLLKYLS---LTQRYDEAIELLEKLRERD-------------PEVAVLLARVYLLMNE---EVEAIRLLNEALKENP- 231 (395)
T ss_pred HHHHHHHHh---hcccHHHHHHHHHHHHhcC-------------CcHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCC-
Confidence 455555554 4678999999999887543 5566677888776664 5799999998775321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
.+ +..+...++++... ...+.+++..++|++..|...++|+.+|..+-.
T Consensus 232 -----------------~d----~~LL~~Qa~fLl~k------~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 232 -----------------QD----SELLNLQAEFLLSK------KKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred -----------------CC----HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 11 44455566666543 345788999999999999999999999988654
No 251
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.73 E-value=24 Score=44.74 Aligned_cols=106 Identities=22% Similarity=0.285 Sum_probs=77.7
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
+..++.++-+.||..|..-.|+.+...++.++ ...+.+++.++..-...|...+||.++++.|+
T Consensus 225 l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP----------------~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~ 288 (1005)
T KOG1949|consen 225 LYSLLEDPYPMVRSTAILGVCKITSKFWEMIP----------------PTILIDLLKKITDELAFDTSSDVRCSVFKGLP 288 (1005)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC----------------HHHHHHHHHHHHHHhhhccchheehhHhcCcH
Confidence 34678899999999999999998876664331 34567777777777778899999999999885
Q ss_pred CCCCcchhhcc---HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCC
Q 000194 587 GNRGFDDFLAQ---ADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630 (1880)
Q Consensus 587 ~~~~fd~~L~~---~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~ 630 (1880)
. -.+.-++. ...++.+-.+++|.+..||-+++++|-++-..-
T Consensus 289 ~--~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr 333 (1005)
T KOG1949|consen 289 M--ILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR 333 (1005)
T ss_pred H--HHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhh
Confidence 2 10111111 124677778889999999999999998875543
No 252
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=84.51 E-value=82 Score=36.08 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=104.0
Q ss_pred HHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHH
Q 000194 606 AALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIH 685 (1880)
Q Consensus 606 ~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il 685 (1880)
...+..++++....++.|..++.+.- ...|.. .+.+..+... +....+..+.+++..+.+..+..+ |++.+++
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v----~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L 80 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN-VCVPPV----LQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF-PFLQPLL 80 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc-cchhHH----HHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH-HHHHHHH
Confidence 35567789999999999999998873 233333 3344444444 344445567788888887766554 6666655
Q ss_pred HHHHHHhccCCC-CCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc
Q 000194 686 KALVARLLEGTG-INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1880)
Q Consensus 686 ~~ll~~l~~~~~-~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~ 764 (1880)
..+.-....... .+.......+...++-.++...++ +-.++++.+...+.+.++...+..|+.++..+++.. +
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~--v 154 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE--V 154 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--h
Confidence 554333222111 112333333444566666665554 666788888888833335667888899999998543 3
Q ss_pred cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 765 i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
++++ .....+..-+..+..+.+-......++
T Consensus 155 vd~~----s~w~vl~~~l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 155 VDFY----SAWKVLQKKLSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred ccHH----HHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 3433 345555555555544554444333333
No 253
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.50 E-value=1e+02 Score=43.78 Aligned_cols=194 Identities=15% Similarity=0.163 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000194 22 SLDALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
-+..+..|++.|..|+. .+.+|-.||...+.+. ..+....+++.......+++.+.+.+.|......+..|+...
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~l 114 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKL 114 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 34568889999988875 6667988888888443 222222244555555568888999999999999999997653
Q ss_pred cCcchhHHHHHHHHHHhhccc------CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-----C------
Q 000194 101 LGENASKVSKFSNYMRTVFEV------KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-----G------ 163 (1880)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~------~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-----~------ 163 (1880)
-.+.++||+.++|. +.+..|...|..++.-.-. .....+....+-+..+.+.. .
T Consensus 115 -------kk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~--~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slS 185 (1312)
T KOG0803|consen 115 -------KKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA--EEKDRHVWFKCDPEIFYLVTEILVKETPDSLS 185 (1312)
T ss_pred -------HHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC--hhhhHHHHHHhhHHHHHHHHHHHhccCccccc
Confidence 14678888888874 2345555555554432211 11222222222222222211 0
Q ss_pred C----Cc---c--hhH--HHHHHHHHHHHhh-cCc----cchhchHHHH--HHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 164 D----RV---E--YRR--FAAVLILKEMAEN-AST----VFNVHVAEFV--DAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 164 ~----~~---~--~~R--~aA~~~l~~la~~-~p~----~l~~~l~~i~--~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
+ .. + ..| ..++.++..+-.. .+. ...+-+..++ +.+|.-+.++.+.||.++.+.+-.+.+.+
T Consensus 186 d~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i 265 (1312)
T KOG0803|consen 186 DLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDI 265 (1312)
T ss_pred hhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhh
Confidence 0 00 0 122 3355555554422 221 1234455665 56999999999999999999988888777
Q ss_pred hhh
Q 000194 226 EKR 228 (1880)
Q Consensus 226 ~~r 228 (1880)
..+
T Consensus 266 ~~~ 268 (1312)
T KOG0803|consen 266 LNR 268 (1312)
T ss_pred HHh
Confidence 655
No 254
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.23 E-value=32 Score=43.11 Aligned_cols=189 Identities=18% Similarity=0.200 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcc
Q 000194 1551 VWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDL 1630 (1880)
Q Consensus 1551 ~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~ 1630 (1880)
.=+-+|..-..|....++++.|.++--.=-..++=+.|..+|.+.++++|+ .-.+.++.|-..=.+|.
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~----------NleaLmaLAVSytNeg~-- 368 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT----------NLEALMALAVSYTNEGL-- 368 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHhhhhh--
Confidence 445667777777766677888888888877888999999999999998874 24566666666656664
Q ss_pred hHHHHHHHHHHHHHHh-c-----CC-CccccccccccccccCcchhhHH---HHHHHHhhhHhh-cCC----CC-----C
Q 000194 1631 KRKEAFARLQTLAMEL-S-----SC-PVIQSAASTSLTTATSTNVPLIA---RVYLKLGSWKRA-LPP----GL-----D 1690 (1880)
Q Consensus 1631 ~~~~Al~~L~~~~~~~-~-----~~-~~~~~~~~~~~~~~~~~~~~l~a---~~~~~lg~w~~~-~~~----~~-----~ 1690 (1880)
..+|+..|.+-+..- . .. .+.......++ .+...++ +.|+-.+.=.-. ..+ ++ .
T Consensus 369 -q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~-----~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 369 -QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSF-----LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred -HHHHHHHHHHHHHhCccchhccccCccccccCCcCC-----CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 578999998865421 1 00 00000000011 1111122 222222221110 000 00 1
Q ss_pred CCCHHHHHHHHHHHHhhcccchHHHHHHHHH--H----HHHHHhhhcc--CCC------------CchhhHHHHHHHHHH
Q 000194 1691 DESIPEIIAAYRNATQCATKWGKAWHSWALF--N----TAVMSHYTLR--GLP------------SVAPQFVVHAVTGYF 1750 (1880)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~--n----~~~~~~~~~~--~~~------------~~~~~~~~~ai~~y~ 1750 (1880)
...++..+.+|+.|+...|+.|..|-+++-. | .+.++.|.+- =+| .....+...|+++|+
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 2346777788888888888888888877422 2 2334433210 001 122345678999999
Q ss_pred HHHhhcc
Q 000194 1751 HSIACAA 1757 (1880)
Q Consensus 1751 ~si~~~~ 1757 (1880)
.+|.+..
T Consensus 523 ~AL~mq~ 529 (579)
T KOG1125|consen 523 EALSMQR 529 (579)
T ss_pred HHHHhhh
Confidence 9998854
No 255
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=84.16 E-value=1.2e+02 Score=37.61 Aligned_cols=183 Identities=13% Similarity=0.062 Sum_probs=100.6
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC-CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHH
Q 000194 124 DREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG-DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVA 202 (1880)
Q Consensus 124 d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~-~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~ 202 (1880)
+-.+...+-+++..=--..+..+.+.++..+. ++.-+.+ =+.-+.=..++.+++.+....|..|..+...-+|.++..
T Consensus 105 ~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~-~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~ 183 (372)
T PF12231_consen 105 PKSICTHYLWCLSDQKFSPKIMTSDRVERLLA-ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPD 183 (372)
T ss_pred CHHHHHHHHHHHHcCCCCCcccchhhHHHHHH-HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665542111122233444443332 2222222 223344566788889999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHhhhchh-------------hHHHHHHHHHHHHHhhccCCCChhHHHHHHH--HHHHH
Q 000194 203 LRDPTLAVRERAVEALRACLRVIEKRETR-------------WRVQWYYRMFEATQDGLGRNAPVHSIHGSLL--AVGEL 267 (1880)
Q Consensus 203 l~D~~~~VR~aA~~al~~~~~~i~~r~~~-------------~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~--~l~~l 267 (1880)
+-+....+|..|...+-.+...+.. +.. ....+...+.+.+..-+.+++. ..++--. ++--|
T Consensus 184 l~~~~k~ir~~a~~l~~~~~~~l~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~L 260 (372)
T PF12231_consen 184 LLSSAKDIRTKAISLLLEAKKCLGP-NKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDE--YKLAMQIWSVVILL 260 (372)
T ss_pred HhhcchHHHHHHHHHHHHHHHHhCh-hHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCC--cchHHHHHHHHHHH
Confidence 9999999999876655444332221 100 0001122222223332333111 1111111 12222
Q ss_pred HHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 268 LRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 268 l~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
++...-.-.+++.+.+...-.++++.++.+|.++..++..+..
T Consensus 261 L~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 261 LGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred hCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2211112234666666666677899999999999999998876
No 256
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.00 E-value=20 Score=42.40 Aligned_cols=147 Identities=15% Similarity=0.222 Sum_probs=100.4
Q ss_pred CchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc----h-h-chHHHHHHHHHHhc--------CCchhH
Q 000194 145 MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF----N-V-HVAEFVDAIWVALR--------DPTLAV 210 (1880)
Q Consensus 145 ~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l----~-~-~l~~i~~~i~~~l~--------D~~~~V 210 (1880)
...++.+..++.++..+ ++.....|.-|+.+|..+.+++|... . . ...-+.+++.+.+. |....+
T Consensus 112 ~i~~~~~liiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred hHHHhhhHHHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 34556666777777766 44466788999999999999988643 2 2 34445577888887 777888
Q ss_pred HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH-HHhhccCCCC---hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHH
Q 000194 211 RERAVEALRACLRVIEKRETRWRVQWYYRMFEA-TQDGLGRNAP---VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIV 286 (1880)
Q Consensus 211 R~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~-~~~~l~~~~~---~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~l 286 (1880)
=..|..|+..+...........+..++.+++.+ ++.++.-... .+.+...+..+..++...|.....|+.++...+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888999988887765433333455556555544 6666543222 455667666788888877888888888888777
Q ss_pred HHHhhc
Q 000194 287 LRYLEH 292 (1880)
Q Consensus 287 l~~~~~ 292 (1880)
...+.+
T Consensus 271 ~~~l~n 276 (282)
T PF10521_consen 271 SQILEN 276 (282)
T ss_pred HHHhcC
Confidence 765544
No 257
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.92 E-value=76 Score=42.55 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=90.4
Q ss_pred CChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch
Q 000194 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD 593 (1880)
Q Consensus 514 ~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~ 593 (1880)
.++.+|.+|..+.+.++-....... .+. ............++..+. ..+..+....+.+-+...+.+|+ .
T Consensus 447 ~~~~l~~ta~L~~~~lv~~~c~~~~--~~~-~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~LkaLg---N--- 516 (618)
T PF01347_consen 447 NSPYLRETALLSLGSLVHKYCVNSD--SAE-FCDPCSRCIIEKYVPYLE-QELKEAVSRGDEEEKIVYLKALG---N--- 516 (618)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHTT--------------SS--GGGTHHHH-HHHHHHHHTT-HHHHHHHHHHHH---H---
T ss_pred CChhHHHHHHHHHHHHhCceeeccc--ccc-cccccchhhHHHHHHHHH-HHHHHHhhccCHHHHHHHHHHhh---c---
Confidence 3578999999988888754321100 000 000001111222333333 34455667788888888899885 1
Q ss_pred hhccHhhHHHHHHHhCCC---CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 000194 594 FLAQADCLSAIFAALNDE---DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1880)
Q Consensus 594 ~L~~~~~l~~L~~~l~D~---~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1880)
+..+..++.+...+.+. ...+|.+|+..+.+++..+|..+.+. +..++. +...+.+.|..|.. .|+
T Consensus 517 -~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~----l~~I~~---n~~e~~EvRiaA~~---~lm 585 (618)
T PF01347_consen 517 -LGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREI----LLPIFM---NTTEDPEVRIAAYL---ILM 585 (618)
T ss_dssp -HT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHH----HHHHHH----TTS-HHHHHHHHH---HHH
T ss_pred -cCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHH----HHHHhc---CCCCChhHHHHHHH---HHH
Confidence 22356777777777666 67899999999999998887655443 333333 22256777777654 344
Q ss_pred HhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHH
Q 000194 671 RNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711 (1880)
Q Consensus 671 ~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~ 711 (1880)
+..|. ..++..+...+..+ .+..|...+...
T Consensus 586 ~~~P~------~~~l~~i~~~l~~E----~~~QV~sfv~S~ 616 (618)
T PF01347_consen 586 RCNPS------PSVLQRIAQSLWNE----PSNQVASFVYSH 616 (618)
T ss_dssp HT---------HHHHHHHHHHHTT-----S-HHHHHHHHHH
T ss_pred hcCCC------HHHHHHHHHHHhhC----chHHHHHHHHHh
Confidence 44332 45566666666643 367776655443
No 258
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.89 E-value=82 Score=38.26 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=52.2
Q ss_pred hHHHHHHHhCCCCH----hHHHHHHHHHHhhhcCCccccc------------------------HHHHHHHHHHHHHHhc
Q 000194 600 CLSAIFAALNDEDF----DVREYAISVAGRLSEKNPAYVL------------------------PALRRHLIQLLTYLEQ 651 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~----~VR~~a~~~l~~l~~~~p~~v~------------------------p~l~~~l~~~l~~l~~ 651 (1880)
.+..|......++. .++..+-+.|-.++......+. +.-.+.+..++..+..
T Consensus 205 ~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp 284 (330)
T PF11707_consen 205 TLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKP 284 (330)
T ss_pred HHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCC
Confidence 45555554444444 8999999999988853211121 2224667777877766
Q ss_pred CCCChHhHHHHHHHHHHHHHhCcccccCchHHHH
Q 000194 652 SSADNKCREESAKLLGCLIRNCERLIRPYIAPIH 685 (1880)
Q Consensus 652 ~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il 685 (1880)
. ++..++ +++-.+.+++|+.+.||+...-
T Consensus 285 ~-e~~~q~----~Lvl~Il~~~PeLva~Y~~~~~ 313 (330)
T PF11707_consen 285 W-EDDRQQ----ELVLKILKACPELVAPYFNNLP 313 (330)
T ss_pred C-ccHHHH----HHHHHHHHHChHHHHHHHHhhh
Confidence 5 454433 4566788999999999987653
No 259
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=83.89 E-value=1.3e+02 Score=37.79 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=87.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...+..++....+.|+.+.|.+.|.+.....+ +|.....++.+. .| +..+++..+++..+..
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-----------~~~l~~l~~~l~--~~---~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-----------DERLVLLIPRLK--TN---NPEQLEKVLRQQIKQH 324 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------CHHHHHHHhhcc--CC---ChHHHHHHHHHHHhhC
Confidence 5578899999999999999999999998876322 355555555542 24 3567899888876542
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
..+ ..-.-..++.++..++| ++..++|+.+.+..|+. ..+..+|....+.
T Consensus 325 P~~---------------~~l~l~lgrl~~~~~~~-------------~~A~~~le~al~~~P~~-~~~~~La~~~~~~- 374 (398)
T PRK10747 325 GDT---------------PLLWSTLGQLLMKHGEW-------------QEASLAFRAALKQRPDA-YDYAWLADALDRL- 374 (398)
T ss_pred CCC---------------HHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc-
Confidence 211 01122346666666666 56788999999999875 4566777665431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~ 1755 (1880)
+ -...|..+|-+++.+
T Consensus 375 ------g-------~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 375 ------H-------KPEEAAAMRRDGLML 390 (398)
T ss_pred ------C-------CHHHHHHHHHHHHhh
Confidence 1 123678888888765
No 260
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=83.79 E-value=1.4e+02 Score=38.20 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000194 1548 NVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1880)
Q Consensus 1548 ~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1880)
..+..+-+| +.+|.+-...-..|+-+++.--+.|....|...|.++++++|.
T Consensus 565 t~Esl~All--qkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 565 TRESLEALL--QKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred cHHHHHHHH--HHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 334444443 3444443333467899999999999999999999888887764
No 261
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.49 E-value=11 Score=45.63 Aligned_cols=86 Identities=23% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhh-----hhcHHHHH
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDV-----QLKESWYE 1365 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~-----~~~~~~~e 1365 (1880)
||++=.--++.+-||+|......= .|++...+..|.+.|.+|+.++.|.|..+.+-...+. -..+..||
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 566666667788899998654321 2566788999999999999999999998865432222 22344699
Q ss_pred HhcCHHHHHHHHHHHHh
Q 000194 1366 KLQRWDDALKAYTNKAS 1382 (1880)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~ 1382 (1880)
++++.++|-.+|++-++
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999987654
No 262
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=83.44 E-value=17 Score=44.76 Aligned_cols=114 Identities=16% Similarity=0.080 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000194 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1880)
Q Consensus 1571 ~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~ 1650 (1880)
.+.+-+.-+.+.|++..|...+.++...+|. .+...+..+..+...|+ ..+|+..++..+.--.
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------~~~a~~~~a~~~~~~g~---~~eAl~~~~~Al~l~P--- 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------NAELYADRAQANIKLGN---FTEAVADANKAIELDP--- 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCc---
Confidence 4667788999999999999999999887653 46777888888888884 6899999888764211
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
..+.+|+.+|.-...+ ...++.+..|+.+++++|++..++...+.....+
T Consensus 68 -------------------~~~~a~~~lg~~~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 -------------------SLAKAYLRKGTACMKL------EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------------------CCHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1234455555544443 3467889999999999999887766665554544
No 263
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=83.44 E-value=30 Score=42.12 Aligned_cols=152 Identities=14% Similarity=0.106 Sum_probs=96.6
Q ss_pred HHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCch
Q 000194 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYI 681 (1880)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~ 681 (1880)
..+..++.+.+...|..|+..|..=.... .++|+|-+++.+.++.-.. .+...-...++++..|+.+..=.+.||+
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~tD~gl~--~LlPyf~~fI~~~v~~n~~--~nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRTDPGLQ--QLLPYFVRFIAEGVTVNLD--QNLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCCch--hhhhHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 34444555567778888888765422222 3678887776655543211 0233334456667777777666788999
Q ss_pred HHHHHHHHHHhccCCC-----CCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh-hHHHHHHHHH
Q 000194 682 APIHKALVARLLEGTG-----INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT-KREVAVSTLG 755 (1880)
Q Consensus 682 ~~il~~ll~~l~~~~~-----~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~-~r~~Al~~Lg 755 (1880)
..+++.++..+-.+.. .+....++..+...++.++...+.....-.+.++..+.+++.|..... ..=-|+.+|+
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS 336 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence 9999888877643211 123567889999999999998887666666777878888888764322 2344555555
Q ss_pred HH
Q 000194 756 QV 757 (1880)
Q Consensus 756 ~l 757 (1880)
.+
T Consensus 337 ~l 338 (343)
T cd08050 337 AL 338 (343)
T ss_pred Hh
Confidence 43
No 264
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.30 E-value=15 Score=49.26 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=86.0
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc----
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE---- 229 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~---- 229 (1880)
+..+.+|+....-... .|..++..+....+.--...+..+++.+-..-...++.+|.+|.-+++.+..-.....
T Consensus 397 v~~i~~~I~~~~~~~~--ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDD--EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHTT-S-HH--HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHcCCCCHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 5566677764332222 2334455555443222233444444443322234567899999999988776554331
Q ss_pred ------hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhc---chhHHHHH
Q 000194 230 ------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEH---RDRLVRLS 300 (1880)
Q Consensus 230 ------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~---~~~~Vr~~ 300 (1880)
......+.+.+...+..+.... +.+.+..+|.+||-+-. +.....+..+... .+..+|.+
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 1122233344444444334443 35668888888876531 1233334444433 36789999
Q ss_pred HHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC----CcchHHHHH
Q 000194 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA----ERDSGFIAL 345 (1880)
Q Consensus 301 ~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~----~r~~a~~al 345 (1880)
|+.++..++...+.. +.+.++.++.+.. .|.+|+..|
T Consensus 544 Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 544 AIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 999999887665543 3344445544432 477776543
No 265
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=83.24 E-value=11 Score=35.77 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1880)
+.+.+..+.+ +.+-.|..++..|..+++... ......+.++..++..++++ ++-|--+++.++..|+...+.
T Consensus 5 ~~~al~~L~d--p~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-----DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLND--PLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-----DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccC--CCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHChH
Confidence 3344555544 466789999999999998766 33445788999999999986 778888999999999876543
Q ss_pred chhhhHHhHHHHHHHHHhcC
Q 000194 722 GMRQYISELMPLIVEALLDG 741 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~ 741 (1880)
.++|.+++...|.
T Consensus 77 -------~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 77 -------EVLPILLDEYADP 89 (92)
T ss_pred -------HHHHHHHHHHhCc
Confidence 5677777776654
No 266
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=83.21 E-value=75 Score=36.05 Aligned_cols=98 Identities=19% Similarity=0.262 Sum_probs=69.5
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
.+-+..+...+.|++.-.|..+..++|+|-.-. -.|.+.+.|. +..+.+.+|.+|+.+||.++.
T Consensus 186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~---ai~~L~k~L~-------d~~E~pMVRhEaAeALGaIa~------ 249 (289)
T KOG0567|consen 186 EEAINALIDGLADDSALFRHEVAFVFGQLQSPA---AIPSLIKVLL-------DETEHPMVRHEAAEALGAIAD------ 249 (289)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccchh---hhHHHHHHHH-------hhhcchHHHHHHHHHHHhhcC------
Confidence 356788888999999999999999999986533 3577766543 222567899999999999975
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1880)
+..+++|...+.|+ .+-|+.....+++.+-...|
T Consensus 250 ----e~~~~vL~e~~~D~-----~~vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 250 ----EDCVEVLKEYLGDE-----ERVVRESCEVALDMLEYENS 283 (289)
T ss_pred ----HHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHHhcc
Confidence 34466677777764 55566666666665443333
No 267
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.86 E-value=5.5 Score=35.36 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
|+...|...+....+.|+++.|...+.++..++|. .+.+.+-.+...|.+|+ +..+|+..+++.++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----------~~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----------NAEAYYNLGLAYMKLGK--DYEEAIEDFEKALK 66 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----------HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHH
Confidence 45789999999999999999999999999988763 47888999999999984 25789998887653
No 268
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.62 E-value=7.1 Score=34.60 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
..++.+..|++|++++|+...+|...|..+.+.- +-...|++.|-++|.+.
T Consensus 18 ~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------------~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------------KDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------------THHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------------ccHHHHHHHHHHHHHcC
Confidence 3578899999999999999999999998866521 13447888888888763
No 269
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=82.61 E-value=86 Score=43.96 Aligned_cols=164 Identities=12% Similarity=-0.007 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~ 1649 (1880)
..|+..+.++.+.|+++.|...+.++...+|. .+......+..+-..|+ ..+|+..+++.+..-
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~----------~~~l~~~La~~l~~~Gr---~~eAl~~~~~AL~l~--- 606 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLG----------DNALYWWLHAQRYIPGQ---PELALNDLTRSLNIA--- 606 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhC---
Confidence 45777888888899999988888887765432 12222222222223463 578888887765321
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhh
Q 000194 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729 (1880)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~ 1729 (1880)
+. +..+..+|.-..+. ...++....|.++++++|+...+|..+|.+..+.
T Consensus 607 ------------------P~--~~a~~~LA~~l~~l------G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~---- 656 (987)
T PRK09782 607 ------------------PS--ANAYVARATIYRQR------HNVPAAVSDLRAALELEPNNSNYQAALGYALWDS---- 656 (987)
T ss_pred ------------------CC--HHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----
Confidence 01 23445555544443 3467888888888888888888888888664431
Q ss_pred hccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000194 1730 TLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1880)
Q Consensus 1730 ~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1880)
.....|+..|-+++... + ...+....+=.+++..|+.++....+++.+.-
T Consensus 657 ----------G~~eeAi~~l~~AL~l~-----P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 657 ----------GDIAQSREMLERAHKGL-----P-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred ----------CCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 12356777788877764 2 23445566667777777777666666666543
No 270
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=82.16 E-value=18 Score=46.56 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=95.6
Q ss_pred CChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCC--CHhHHHHHHHHH---HhhhcCCcccccHHHHHHHHHHHH
Q 000194 573 ADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDE--DFDVREYAISVA---GRLSEKNPAYVLPALRRHLIQLLT 647 (1880)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~--~~~VR~~a~~~l---~~l~~~~p~~v~p~l~~~l~~~l~ 647 (1880)
.++.+|..++.-|.. +-...-..+.+++.++.++..+ +..+|..++..+ .....+.+..+...++..+..-+.
T Consensus 295 a~~~lq~kIL~~L~k--S~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 295 ASPRLQEKILSLLSK--SVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW 372 (501)
T ss_pred CCHHHHHHHHHHHHH--hHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence 467788888888852 1111111256788999999887 678899999998 777777665555555555433222
Q ss_pred -HHh------cCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC
Q 000194 648 -YLE------QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1880)
Q Consensus 648 -~l~------~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1880)
.+. .+..+...|..+-++||.|++..+..+..= -.++.-|...+.++ .++++.++-.|++.|+....
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~-----~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDE-----SPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCc-----chHHHHHHHHHHHHHHHHHh
Confidence 221 111456778889999999999999887433 34556666666543 78899998999999887654
Q ss_pred C
Q 000194 721 F 721 (1880)
Q Consensus 721 ~ 721 (1880)
.
T Consensus 447 ~ 447 (501)
T PF13001_consen 447 D 447 (501)
T ss_pred c
Confidence 3
No 271
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=81.95 E-value=29 Score=35.59 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=73.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++.......+..+.+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY----------NSRYWLGLAACCQMLKE---YEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 44677788899999999999999999888766542 46777778888877774 578888887755321
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAW 1715 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w 1715 (1880)
.. .......++.+|...|+ .+..+..|+.+.+++|+..+.+
T Consensus 82 p~---------------~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PD---------------DPRPYFHAAECLLALGE-------------PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CC---------------ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhccccchHH
Confidence 10 01112234555555544 4677889999999998775533
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.86 E-value=3.7 Score=32.76 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000194 1674 VYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1880)
Q Consensus 1674 ~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1880)
.++.+|.+..+. ..+++..+.|+++++.+|++..+|+.+|.
T Consensus 3 ~~~~la~~~~~~------G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRL------GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666654 35789999999999999999999999884
No 273
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=81.80 E-value=3.1 Score=36.85 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=39.6
Q ss_pred HhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000194 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1880)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1880)
+.|+|++|+..|++.+...++. .+...++.+|+.+.|+++.-.......
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5789999999999998765543 467789999999999999887777654
No 274
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=81.44 E-value=1.6e+02 Score=37.12 Aligned_cols=109 Identities=20% Similarity=0.168 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccccc-
Q 000194 557 LIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL- 635 (1880)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~- 635 (1880)
+...+++.|+.-++...+|.+|...++.|+-+--+|.-|+- ++...+..|.+..+.+....|++.+-.+...++..-.
T Consensus 526 l~~~~~~tlI~Pavrn~a~~IrE~gve~L~l~clldv~La~-~n~~i~~~cv~KGn~~lk~~A~q~~vDl~~~hg~~g~~ 604 (885)
T COG5218 526 LHEAIVETLILPAVRNSAPNIRETGVEILELGCLLDVALAR-PNHAIIQSCVHKGNMELKSMAFQMCVDLVLSHGDEGEG 604 (885)
T ss_pred HHHHHHHHHhhhhhccCCCchhhhhhhhhhhhhhhhHhhcC-CchHHHHHHHhccchhHHHHHHHHHHHHHHHhcccccc
Confidence 46677788888889999999999999998643333444443 3567777888888888888999988887766653221
Q ss_pred ---HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 000194 636 ---PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1880)
Q Consensus 636 ---p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1880)
..+.+++...+..+ +.++.+..++..|+.++
T Consensus 605 k~ds~l~~Il~~~l~~~----e~~E~q~i~aegl~Kl~ 638 (885)
T COG5218 605 KLDSLLGDILRHILQGL----ETKERQDIIAEGLSKLA 638 (885)
T ss_pred hHHHHHHHHHHHHHhcc----CchhHHHHhhhHHHHHH
Confidence 12344443333332 33444455666666554
No 275
>PRK14574 hmsH outer membrane protein; Provisional
Probab=81.21 E-value=2.3e+02 Score=38.94 Aligned_cols=124 Identities=10% Similarity=-0.050 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC-CC----cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPE-TS----HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~-~~----~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
...-.++.-..-.++++..|...+.++....|- .. +...+..+-.....-.+.++=..|+ -.+|.+.++++.
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd---l~~Ae~~le~l~ 443 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND---LPTAQKKLEDLS 443 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 333467888888999999999999998764331 10 0000000112333334554445564 578999999886
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
..-..+ ..-.-.+|.++ .|+ ..+.+..+.|+.+..++|....+-+.-|....
T Consensus 444 ~~aP~n---------------~~l~~~~A~v~----~~R---------g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 444 STAPAN---------------QNLRIALASIY----LAR---------DLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HhCCCC---------------HHHHHHHHHHH----Hhc---------CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 542211 01111223332 222 35788888898888888887666655554433
No 276
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.91 E-value=4.5 Score=50.55 Aligned_cols=129 Identities=17% Similarity=0.102 Sum_probs=88.6
Q ss_pred hhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccch
Q 000194 986 PVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGH 1065 (1880)
Q Consensus 986 ~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~~~~~ 1065 (1880)
..+-|.+-+...+..+..+......+--++..+-..-..|...-+|.++..+++.+.+.+|..|+-.+|+++-+ |...
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vc--fN~~ 968 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVC--FNTT 968 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeecccccee--hhhh
Confidence 34444555555543333344333322223333222223455555788888888777788999999999999866 4478
Q ss_pred hHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHh
Q 000194 1066 ISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1880)
Q Consensus 1066 ~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~~ 1116 (1880)
+.+..+-|.|-|.+.+.++|+.++-++..|+..-.-...-+++.+...+..
T Consensus 969 ~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGqlg~ma~~L~d 1019 (1128)
T COG5098 969 ADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQLGKMALLLTD 1019 (1128)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccchhhhHhhccC
Confidence 889999999999988999999999999999887666666677777776644
No 277
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=80.81 E-value=17 Score=37.41 Aligned_cols=100 Identities=14% Similarity=0.134 Sum_probs=70.7
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHHH
Q 000194 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTY 648 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~ 648 (1880)
.++|+..-..+.+.++... -...+.++.|-.-++..++.++..|+.+|..++++++..+...+ ++++.+++.-
T Consensus 14 ~~~D~~~il~icd~I~~~~-----~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l 88 (133)
T cd03561 14 EEPDWALNLELCDLINLKP-----NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKI 88 (133)
T ss_pred CCccHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHH
Confidence 4578888888888775321 11246788888889999999999999999999999976553333 2445554444
Q ss_pred HhcC-CCChHhHHHHHHHHHHHHHhCcc
Q 000194 649 LEQS-SADNKCREESAKLLGCLIRNCER 675 (1880)
Q Consensus 649 l~~~-~~~~~~r~~a~~~L~~l~~~~~~ 675 (1880)
+... ..+..++..++.++..-....+.
T Consensus 89 ~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 89 AKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4331 25678888888888888877653
No 278
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=80.44 E-value=2.9 Score=38.99 Aligned_cols=77 Identities=23% Similarity=0.243 Sum_probs=45.6
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc---hhh-hhhcHHHHHHhcCHHHHH
Q 000194 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK---ELD-VQLKESWYEKLQRWDDAL 1374 (1880)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~---~~~-~~~~~~~~e~lg~W~~Al 1374 (1880)
+.|..|+.+.|..+...+.+ + ....+-.|...|-++|+.+.+..+++.... +.. .-+.+.-+.++|+|++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~---~-~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTN---P-NSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGT---H-HHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCC---h-hHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 67888999888877643210 1 233445577888888888888777753111 101 112244577778888887
Q ss_pred HHHHH
Q 000194 1375 KAYTN 1379 (1880)
Q Consensus 1375 ~~y~~ 1379 (1880)
..|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77764
No 279
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=80.32 E-value=2.7e+02 Score=39.19 Aligned_cols=141 Identities=15% Similarity=0.031 Sum_probs=88.2
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHH--------HhhcCChHHHhHHHHHHhchhh---hhhc-HHHHHH
Q 000194 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHI--------NNQLHQHEAAVGILTYAQKELD---VQLK-ESWYEK 1366 (1880)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~i--------y~~L~~~D~~~Gi~~~~~~~~~---~~~~-~~~~e~ 1366 (1880)
+.|.+|.-+.|..+... ++..+....|..+ |.+.++.+.+-- .+....... ..+. ...|++
T Consensus 122 ~~~~kA~~~ye~l~~~~------P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ------KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ccChhHHHHHHHHHHhC------CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 88999999888877654 3345666667776 888877776665 443222211 2333 557999
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHH-hhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhh
Q 000194 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAA-LARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQ 1445 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~-Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~ 1445 (1880)
+|+|++|+..|.+..+..+... +....+-..+.+ +++ +.+..+.+.... .+ ..+....++..-..|+-+.
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~---~~~~~L~~ay~q~l~~-~~a~al~~~~lk-~d----~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSA---AERRQWFDVLLAGQLD-DRLLALQSQGIF-TD----PQSRITYATALAYRGEKAR 265 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhhCH-HHHHHHhchhcc-cC----HHHHHHHHHHHHHCCCHHH
Confidence 9999999999998876544332 222223235555 577 666665322111 11 2233355678888999999
Q ss_pred HHHHHhhcCC
Q 000194 1446 MAEYVSRLDD 1455 (1880)
Q Consensus 1446 ~~~~~~~~~~ 1455 (1880)
..+.+..++.
T Consensus 266 A~~~L~~~~~ 275 (987)
T PRK09782 266 LQHYLIENKP 275 (987)
T ss_pred HHHHHHhCcc
Confidence 9888887754
No 280
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=80.30 E-value=1.4e+02 Score=35.90 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=47.9
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCc---chhHHHHHHHHHHHHhh
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRV---EYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~---~~~R~aA~~~l~~la~~ 183 (1880)
|.++++ ++. .+|.-+...|+..+..|+..++......+...++..+.|+.+... ......|+.+|..+...
T Consensus 107 ~~~fl~-ll~-~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 107 YSPFLK-LLD-RNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHH-H-S--SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHH-Hhc-CCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 556666 665 569999999999999999987666665566778889999874222 23447778888887754
No 281
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=79.66 E-value=1.9e+02 Score=37.01 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccC
Q 000194 45 LALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVK 122 (1880)
Q Consensus 45 ~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~~-~~~~~~~~~~~L~~~l~~~ 122 (1880)
..|-.++....+-...-.=...+..+.+.+..++.+ ++..+=.+++..+++++.. |. +......+...|-.+.. .
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y--~~iP~~sl~~~i~vLCsi~~-~ 228 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY--GDIPSESLSPCIEVLCSIVN-S 228 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc--CcCChHHHHHHHHHHhhHhc-c
Confidence 345555555544332211123444556666666644 4444557899999999875 44 45566777777777764 2
Q ss_pred CChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCC-----CcchhHHHHHHHHHHHHhhcCccchh--chH--
Q 000194 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-----RVEYRRFAAVLILKEMAENASTVFNV--HVA-- 193 (1880)
Q Consensus 123 ~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~-----~~~~~R~aA~~~l~~la~~~p~~l~~--~l~-- 193 (1880)
.+.-+.+-+++..|+.+. .. ..-+..+.+.|.++ ++.+.-.+|+.+++.+.-+.+..-.| .+.
T Consensus 229 --~~l~~~~w~~m~nL~~S~--~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~ 300 (464)
T PF11864_consen 229 --VSLCKPSWRTMRNLLKSH--LG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPS 300 (464)
T ss_pred --cccchhHHHHHHHHHcCc--cH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHH
Confidence 366677777888888642 11 12244455555322 22233368999999988776432222 233
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 194 ~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
.+++.+..+++-+++.| +.+.+..+...+
T Consensus 301 ~vl~sl~~al~~~~~~v---~~eIl~~i~~ll 329 (464)
T PF11864_consen 301 SVLPSLLNALKSNSPRV---DYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHhCCCCee---hHHHHHHHHHHH
Confidence 48899999999888888 444444444444
No 282
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.43 E-value=1.6e+02 Score=36.10 Aligned_cols=255 Identities=18% Similarity=0.302 Sum_probs=141.2
Q ss_pred hhHHHHHHHHHHhHhhhh----HHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH--------
Q 000194 1493 ESYERAYSNMVRVQQLSE----LEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRA-------- 1560 (1880)
Q Consensus 1493 esy~ray~~l~~lq~L~E----LeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~-------- 1560 (1880)
.-++||...|=++-+|.- +||++.-. .. ...+...|.+ .+++...|+..+..-.
T Consensus 128 Nv~dRAvt~lPRVdqlWyKY~ymEE~LgNi---------~g-aRqiferW~~----w~P~eqaW~sfI~fElRykeiera 193 (677)
T KOG1915|consen 128 NVWDRAVTILPRVDQLWYKYIYMEEMLGNI---------AG-ARQIFERWME----WEPDEQAWLSFIKFELRYKEIERA 193 (677)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhccc---------HH-HHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHH
Confidence 345666666666666543 67765311 11 2236667753 5677788887654321
Q ss_pred -hhcC----CcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHH
Q 000194 1561 -LVLP----PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEA 1635 (1880)
Q Consensus 1561 -~vl~----~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~A 1635 (1880)
.+.. -+-++.+|||+|+.--|+|+...|.+.-.++...-.+ + ...-.+..++|++-=.+.+ .+.|
T Consensus 194 R~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~---d----~~~e~lfvaFA~fEe~qkE---~ERa 263 (677)
T KOG1915|consen 194 RSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD---D----EEAEILFVAFAEFEERQKE---YERA 263 (677)
T ss_pred HHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh---H----HHHHHHHHHHHHHHHHHHH---HHHH
Confidence 1111 2346899999999999999999998887766543211 0 0124566777776544433 2333
Q ss_pred HHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHH-----HHHHHHhhccc
Q 000194 1636 FARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIA-----AYRNATQCATK 1710 (1880)
Q Consensus 1636 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~-----~y~~a~~~~~~ 1710 (1880)
--+.+--+..+..+ ... ..|-.+..+--+.+ +.+.+++++- .|..-+.-+|-
T Consensus 264 r~iykyAld~~pk~-----------------rae---eL~k~~~~fEKqfG---d~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 264 RFIYKYALDHIPKG-----------------RAE---ELYKKYTAFEKQFG---DKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHhcCcc-----------------cHH---HHHHHHHHHHHHhc---chhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 33333333332210 001 11223333332222 2355666553 57888899999
Q ss_pred chHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHH----
Q 000194 1711 WGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQ---- 1786 (1880)
Q Consensus 1711 ~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~---- 1786 (1880)
+|.+|+.+-.. .+. .++ ....-+-|=++|+-.+ +-.--..=-|-+-||.+|.-.+++.
T Consensus 321 nYDsWfdylrL----~e~---~g~-------~~~Ire~yErAIanvp----p~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 321 NYDSWFDYLRL----EES---VGD-------KDRIRETYERAIANVP----PASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred CchHHHHHHHH----HHh---cCC-------HHHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999866533 211 122 2234556777776532 1111223568999999998766542
Q ss_pred ----HHHHhcccCCChh------hHHHHHHHHHHhc
Q 000194 1787 ----IALQKGFAHVNIN------TWLVVLPQIIARI 1812 (1880)
Q Consensus 1787 ----~~~~~~~~~ip~~------~wl~~ipQLiaRi 1812 (1880)
+..+.++.-||.. .||..---.|-++
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHc
Confidence 3456778888854 4554444444443
No 283
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=79.03 E-value=17 Score=36.74 Aligned_cols=103 Identities=20% Similarity=0.293 Sum_probs=73.5
Q ss_pred hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccc-hhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000194 1023 DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTG-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101 (1880)
Q Consensus 1023 ~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~~~~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~ 1101 (1880)
++++..++|.+.+.+......+.|.++.-.++.++....+.+ .+..++..+.......+. .+.++.+|..+..+.+
T Consensus 1 E~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~- 77 (121)
T PF12397_consen 1 EDILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQE- 77 (121)
T ss_pred CcHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHccc-
Confidence 357788999999999866567999999999999999888776 677777666655543322 5788888988886652
Q ss_pred ccccchhHHHHHHHhCCCCchhHHHHHHHHh
Q 000194 1102 DFTIFIPSIHKLLLKHRLRHKEFEEIEGRLR 1132 (1880)
Q Consensus 1102 ~f~~fip~i~~~l~~~~~~~~~~~~~~~~~~ 1132 (1880)
....+-..+.+.+.+. +.+...+..+.
T Consensus 78 ~~~~lp~~~~~~l~~~----~~l~~~L~~l~ 104 (121)
T PF12397_consen 78 NVDSLPRKVFKALLKL----PDLIELLSELS 104 (121)
T ss_pred ccccCCHHHHHHHHcC----ccHHHHHHHHH
Confidence 2335666777777663 44555555553
No 284
>PRK11189 lipoprotein NlpI; Provisional
Probab=78.24 E-value=1.6e+02 Score=35.21 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=101.3
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccc
Q 000194 1584 RISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTA 1663 (1880)
Q Consensus 1584 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~ 1663 (1880)
..+.+...+.+++...+ .++ ...+...++.+...+..|+ ..+|+..+++.+..- +
T Consensus 41 ~~e~~i~~~~~~l~~~~-~~~-----~~~a~~~~~~g~~~~~~g~---~~~A~~~~~~Al~l~---P------------- 95 (296)
T PRK11189 41 QQEVILARLNQILASRD-LTD-----EERAQLHYERGVLYDSLGL---RALARNDFSQALALR---P------------- 95 (296)
T ss_pred HHHHHHHHHHHHHcccc-CCc-----HhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcC---C-------------
Confidence 44555555666554222 111 1346778889999999995 678988887755421 0
Q ss_pred cCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHH
Q 000194 1664 TSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVV 1743 (1880)
Q Consensus 1664 ~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~ 1743 (1880)
-.+..+..+|...... ...++....|.+|++++|++..+|...|...... .-..
T Consensus 96 ------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~--------------g~~~ 149 (296)
T PRK11189 96 ------DMADAYNYLGIYLTQA------GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG--------------GRYE 149 (296)
T ss_pred ------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------CCHH
Confidence 1244566666665543 3568889999999999999999998888664421 1234
Q ss_pred HHHHHHHHHHhhccccCCCcchHHhHHHHHHHHH--hcCCcHHHHHHHHhcccCCChhhHHHHHHH
Q 000194 1744 HAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWF--NHGATEEVQIALQKGFAHVNINTWLVVLPQ 1807 (1880)
Q Consensus 1744 ~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf--~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQ 1807 (1880)
.|++.|-+++... +++.. |.+++.+ ..++.++....+.+.....++..|...+.+
T Consensus 150 eA~~~~~~al~~~-----P~~~~----~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~ 206 (296)
T PRK11189 150 LAQDDLLAFYQDD-----PNDPY----RALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVE 206 (296)
T ss_pred HHHHHHHHHHHhC-----CCCHH----HHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 7888888888774 33332 3333221 234445566666666665666677644333
No 285
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=78.23 E-value=1.7e+02 Score=38.14 Aligned_cols=224 Identities=13% Similarity=0.141 Sum_probs=119.6
Q ss_pred HHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC------------------CCCchhHH
Q 000194 89 ALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG------------------GAMTADEV 150 (1880)
Q Consensus 89 ~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~------------------g~~~~~~v 150 (1880)
++-|+..|-.+.. ..+.+-..|..-|..++|.. +..|. -.+.|-.|...- +.-..+|.
T Consensus 272 ~~~aLrfLD~l~~-kdn~qKs~Flk~Ls~~ip~f-p~rv~--~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~ 347 (700)
T KOG2137|consen 272 GLKALRFLDDLPQ-KDNSQKSSFLKGLSKLIPTF-PARVL--FQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFG 347 (700)
T ss_pred hhhhhhhcccccc-cCcHHHHHHHHHHHHhhccC-CHHHH--HHhhhhHHHHHhccccccccccchhhhhhhccchhhhh
Confidence 5666666655542 22333456877788888732 33332 233333333210 11123344
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHH---HHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 151 EFQVKMALDWLRGDRVEYRRFAAVLILKE---MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~R~aA~~~l~~---la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
+..++.+...+.. ..-+.+-+.++.. |.+..|. ......|+|.|..++.|.+..+++.+...+..+++.+-
T Consensus 348 ~~~~p~l~pi~~~---~~~~~~~l~i~e~mdlL~~Kt~~--e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD- 421 (700)
T KOG2137|consen 348 PKMLPALKPIYSA---SDPKQALLFILENMDLLKEKTPP--EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID- 421 (700)
T ss_pred hhhhHHHHHHhcc---CCcccchhhHHhhHHHHHhhCCh--HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-
Confidence 4444444333332 1223444455543 4444444 23566889999999999999999999998887776543
Q ss_pred hchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHh
Q 000194 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPR 307 (1880)
Q Consensus 228 r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~ 307 (1880)
.... =+.++|.+..-........++..++.+++.+++....+ ..-+.+..++...+.+++.+-...+.+...
T Consensus 422 -~~~v----k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~---~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~ 493 (700)
T KOG2137|consen 422 -VPFV----KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA---AVLDELLPILKCIKTRDPAIVMGFLRIYEA 493 (700)
T ss_pred -HHHH----HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1111 13455555443222223567888888999888532211 111122334444556777777776666666
Q ss_pred HhhhChh--hHHHHHHHHHHHHHHHhhc
Q 000194 308 IAHFLRD--RFVTNYLKICMNHILTVLR 333 (1880)
Q Consensus 308 la~~~~~--~f~~~yl~~~~~~Ll~~L~ 333 (1880)
++...+. ++. .+.++|.+.....
T Consensus 494 l~~~~~~g~ev~---~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 494 LALIIYSGVEVM---AENVLPLLIPLSV 518 (700)
T ss_pred HHhhcccceeee---hhhhhhhhhhhhh
Confidence 5543332 332 2456666555543
No 286
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=78.08 E-value=23 Score=41.94 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000194 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1880)
Q Consensus 1571 ~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~ 1650 (1880)
.|+++.+.+|+.+-...|.....++..... ....+.+++|.+-|..++. ...|.+.++..++.+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~----------~~~~vy~~~A~~E~~~~~d--~~~A~~Ife~glk~f~~-- 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR----------CTYHVYVAYALMEYYCNKD--PKRARKIFERGLKKFPS-- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------S-THHHHHHHHHHHHTCS---HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHCCC--
Confidence 699999999999999999999888874321 2468899999999986652 45699999988776532
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc---hHHHHHHHHHHH
Q 000194 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW---GKAWHSWALFNT 1723 (1880)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~---~k~w~~wA~~n~ 1723 (1880)
.....+.+.+++..++ ..+++...|+.++..-+.. .+.|..|..|=.
T Consensus 69 --------------------~~~~~~~Y~~~l~~~~------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 69 --------------------DPDFWLEYLDFLIKLN------DINNARALFERAISSLPKEKQSKKIWKKFIEFES 118 (280)
T ss_dssp ---------------------HHHHHHHHHHHHHTT-------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHhC------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 1233555667776653 4788999999998665533 469999987744
No 287
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=78.00 E-value=80 Score=38.08 Aligned_cols=58 Identities=31% Similarity=0.369 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHHHhhhCCCCchh-HHHHHHHHHHhhhc---CCCcchhHHHHHHHHHHHHhh
Q 000194 123 RDREILVLASKVLGHLARAGGAMTAD-EVEFQVKMALDWLR---GDRVEYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 123 ~d~~v~~~aa~~l~~L~~~~g~~~~~-~v~~~~~~~~~~l~---~~~~~~~R~aA~~~l~~la~~ 183 (1880)
.|+.+.+-+|-+||..+.+||..... .| =+++-|||- ..+++-.|+-|+++...|+.+
T Consensus 276 t~P~lLRH~ALAL~N~~L~~~~a~qrrmv---eKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 276 TDPALLRHCALALGNCALHGGQAVQRRMV---EKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHHH---HhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 47889999999999999987644322 33 367788974 456888999999998888765
No 288
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=77.92 E-value=25 Score=40.55 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=66.0
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccccc
Q 000194 1579 CRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAST 1658 (1880)
Q Consensus 1579 aRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~ 1658 (1880)
+-|+++|+.|..-=.++..++|. .+-...-+|-.+-..|+ ...|++..+.-+.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~----------nAVyycNRAAAy~~Lg~---~~~AVkDce~Al~-------------- 143 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT----------NAVYYCNRAAAYSKLGE---YEDAVKDCESALS-------------- 143 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC----------cchHHHHHHHHHHHhcc---hHHHHHHHHHHHh--------------
Confidence 34678888888877777777763 23333334444445553 4567766654332
Q ss_pred ccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000194 1659 SLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1880)
Q Consensus 1659 ~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1880)
...-..|.|.++|.-...+ ..+.+.+.+|++|++++|+|+-.|-.+
T Consensus 144 --------iDp~yskay~RLG~A~~~~------gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 144 --------IDPHYSKAYGRLGLAYLAL------GKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred --------cChHHHHHHHHHHHHHHcc------CcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 1234788899999877654 457889999999999999997555433
No 289
>PRK12370 invasion protein regulator; Provisional
Probab=77.62 E-value=2.4e+02 Score=37.09 Aligned_cols=204 Identities=11% Similarity=0.028 Sum_probs=122.2
Q ss_pred hcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccccccc
Q 000194 1581 KSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSL 1660 (1880)
Q Consensus 1581 k~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~ 1660 (1880)
..|.+..|...+.++...+|. .+......+.+++.+|+ ..+|+..+++.+.-. +
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~---P---------- 369 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHN----------NPQALGLLGLINTIHSE---YIVGSLLFKQANLLS---P---------- 369 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhC---C----------
Confidence 345588999999999888763 46777778888888885 578999998866421 1
Q ss_pred ccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhh
Q 000194 1661 TTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQ 1740 (1880)
Q Consensus 1661 ~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~ 1740 (1880)
..+.++..+|.-.... ...++.+..|.+|++++|....+++..+..... ..+
T Consensus 370 ---------~~~~a~~~lg~~l~~~------G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-------------~g~ 421 (553)
T PRK12370 370 ---------ISADIKYYYGWNLFMA------GQLEEALQTINECLKLDPTRAAAGITKLWITYY-------------HTG 421 (553)
T ss_pred ---------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-------------ccC
Confidence 1133445555544433 346889999999999999876655443332111 012
Q ss_pred HHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHH-HhcCCcHHHHHHHHhcccCCChhhH--HHHHHHHHHhccCCCh
Q 000194 1741 FVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLW-FNHGATEEVQIALQKGFAHVNINTW--LVVLPQIIARIHSNNR 1817 (1880)
Q Consensus 1741 ~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLw-f~~g~~~~v~~~~~~~~~~ip~~~w--l~~ipQLiaRi~~~~~ 1817 (1880)
| ..|+..|-+++... +.+. .....++... ...|..++....+.+.... ++.-+ ...+-....+.+ .
T Consensus 422 ~-eeA~~~~~~~l~~~-----~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g---~ 490 (553)
T PRK12370 422 I-DDAIRLGDELRSQH-----LQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS---E 490 (553)
T ss_pred H-HHHHHHHHHHHHhc-----cccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH---H
Confidence 3 57788887776542 1111 1122333333 3567777777766664333 33322 223333333333 3
Q ss_pred hHHHHHHHHHHHHHhhCchhhHHHHHHHhcCC
Q 000194 1818 AVRELIQSLLVRIGQSHPQALMYPLLVACKSI 1849 (1880)
Q Consensus 1818 ~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~ 1849 (1880)
.....+..++......+=+.-..|++.+..++
T Consensus 491 ~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~ 522 (553)
T PRK12370 491 RALPTIREFLESEQRIDNNPGLLPLVLVAHGE 522 (553)
T ss_pred HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhh
Confidence 55677888887777766555556777666664
No 290
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=77.43 E-value=28 Score=44.89 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=112.2
Q ss_pred hccHhhHHHHHHHhC--C---------CCHhHHHHHHHHHHhhhcCCcc-cccHHHHHHHHHHHHHHhcC-CCChHhHHH
Q 000194 595 LAQADCLSAIFAALN--D---------EDFDVREYAISVAGRLSEKNPA-YVLPALRRHLIQLLTYLEQS-SADNKCREE 661 (1880)
Q Consensus 595 L~~~~~l~~L~~~l~--D---------~~~~VR~~a~~~l~~l~~~~p~-~v~p~l~~~l~~~l~~l~~~-~~~~~~r~~ 661 (1880)
+..++++..|+.... . -++.+|...+..|++ ..-+ ...|...+++..- .++ ....+.|..
T Consensus 268 ~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~----l~~~~~~~klk~~ 340 (501)
T PF13001_consen 268 LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIAATSFPNILQIVFDG----LYSDNTNSKLKSL 340 (501)
T ss_pred CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHHHhCCccHHHHHhcc----ccCCccccccchh
Confidence 334566766665544 1 234566666666655 2111 1223333333222 223 124577777
Q ss_pred HHHHH---HHHHHhCc-ccccCchHHHHHHHHHHhccCC---CCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHH
Q 000194 662 SAKLL---GCLIRNCE-RLIRPYIAPIHKALVARLLEGT---GINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734 (1880)
Q Consensus 662 a~~~L---~~l~~~~~-~~~~py~~~il~~ll~~l~~~~---~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l 734 (1880)
++..+ ....++++ ..+...-+.|...+.+.+.+.. ....+...+..+..|||.|+...+..+..- -.++.-+
T Consensus 341 ~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~L 419 (501)
T PF13001_consen 341 ALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFL 419 (501)
T ss_pred cchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHH
Confidence 88888 77777655 3444445556666666663111 012366778899999999999877766333 4567777
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhhcCcccc-cCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVIT-PYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 735 ~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~-p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
++.|.+ +..+.|.+.-.+|+.++......-. +.......+..++.....+....+|..|+|....+
T Consensus 420 F~sL~~-~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 420 FDSLED-ESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred HHHhhC-cchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 777854 4678898888888888766543211 11111223333333333344678899888886554
No 291
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=76.97 E-value=38 Score=33.46 Aligned_cols=110 Identities=17% Similarity=0.187 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.+...+....+.|+++.|...+.++....|.. ...+...+..+..+...|+ ..+|+..++.++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-------TYAPNAHYWLGEAYYAQGK---YADAAKAFLAVVKKYPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------cccHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHCCC
Confidence 3678888999999999999999999887654421 0125677888999999885 57899999988754211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1880)
. .....++..+|...... ...++..+.|..+++..|+...
T Consensus 72 ~-------------------~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 72 S-------------------PKAPDALLKLGMSLQEL------GDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred C-------------------CcccHHHHHHHHHHHHh------CChHHHHHHHHHHHHHCcCChh
Confidence 0 11122344444444333 2357788899999988887643
No 292
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=76.74 E-value=78 Score=35.07 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=77.6
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHH-HHHHHhhhCCCCchhHHHHHHHHHHhhhcC
Q 000194 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASK-VLGHLARAGGAMTADEVEFQVKMALDWLRG 163 (1880)
Q Consensus 85 ~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~-~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~ 163 (1880)
.|..+++++..+.... ........|..++. ..++-.+.+..|. +++.+... .+. .+.+.+|..+
T Consensus 52 ~~~~~~lal~~~~~~~--~~~~~~~~~~~~i~----~~~~W~~~D~~~~~~~~~~~~~----~~~-----~~~~~~w~~s 116 (197)
T cd06561 52 IREAQYLALDLLDKKE--LKEEDLERFEPWIE----YIDNWDLVDSLCANLLGKLLYA----EPE-----LDLLEEWAKS 116 (197)
T ss_pred HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHc----CCchHHHHHHHHHHHHHHHHhc----Ccc-----hHHHHHHHhC
Confidence 5777777777775421 12223445555555 2334566554333 44444332 111 1567889988
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 000194 164 DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRV 224 (1880)
Q Consensus 164 ~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~ 224 (1880)
+..+.+|.|.+..+..... ..++..+++.+-..+.|++..||.+...+|+.+...
T Consensus 117 ~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 117 ENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred CcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 8888888887777665544 457788888888888999999999999999987653
No 293
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.50 E-value=3.6e+02 Score=38.54 Aligned_cols=155 Identities=20% Similarity=0.195 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHhccC---CCCcc-hhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcc
Q 000194 557 LIEELVEKLLIAAVADADVTVRHSIFSSLYG---NRGFD-DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA 632 (1880)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~~~fd-~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1880)
+..+++..+......+..+.+|.++++-+.. ...|. ..+...++-..++..++|...+||+.|.++|.-+....-.
T Consensus 1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence 3455665555433445578999998776531 11222 1122245667778899999999999999999988877654
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Q 000194 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1880)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1880)
...+.-++........ .+ .+......|..+||+++-..|-.+.-+++..+..+-...++ ...+.+++-.++
T Consensus 1603 ~~~~~k~d~~~~~~~s--~s-~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e------~~~i~~tvkktv 1673 (1710)
T KOG1851|consen 1603 QFVSDKRDTTSNILQS--KS-KDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARE------SAAIKQTVKKTV 1673 (1710)
T ss_pred ccchHhhhhhhhhhhh--cc-hHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCC------chHHHHHHHHHH
Confidence 4455333332222111 11 22333445788999999998877776777776666666554 344556666666
Q ss_pred HHHHHhcC
Q 000194 713 GDLARVGG 720 (1880)
Q Consensus 713 ~~La~~~g 720 (1880)
.+.-+...
T Consensus 1674 seFrrth~ 1681 (1710)
T KOG1851|consen 1674 SEFRRTHA 1681 (1710)
T ss_pred HHHHHHhh
Confidence 66554433
No 294
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=76.37 E-value=2.1e+02 Score=43.77 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCc-----hhHHhHhhHhHHH
Q 000194 1327 VVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPH-----IVLEATLGRMRCL 1401 (1880)
Q Consensus 1327 ~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~-----~~~~~~~g~m~cl 1401 (1880)
..+...++|.+|.+.|...|.++.. .+..+..+..+++.|.|..+..+|+.......+.. ...-+..+++.|+
T Consensus 1125 ~~~~~~~~~~~L~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~q~~~e~~~~k~~~~~~~~s~~~~~~~~~~~~~a 1202 (2105)
T COG5032 1125 DALGKLELYSSLAEIDMFLSLHRRR--KLLETLVATAYEQVGEWYKAQQLYEVAQRKARSKEFPFSLQYLYWHINDIDCA 1202 (2105)
T ss_pred hHHHHHHHHHHHHHHhhhhccCcch--hhhhHHHHHHHHHHHhHHHHHHHHHHHhhhcccccCchhhHHHHHcccchhhH
Confidence 4456678899999999999988754 44556667779999999999999998764322211 1112345666666
Q ss_pred HHhhC
Q 000194 1402 AALAR 1406 (1880)
Q Consensus 1402 ~~Lg~ 1406 (1880)
..+-+
T Consensus 1203 ~~~~~ 1207 (2105)
T COG5032 1203 DKLQS 1207 (2105)
T ss_pred hhhhh
Confidence 65554
No 295
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=76.35 E-value=1.1e+02 Score=39.11 Aligned_cols=251 Identities=17% Similarity=0.210 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHH-------
Q 000194 1548 NVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYL------- 1620 (1880)
Q Consensus 1548 ~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~a------- 1620 (1880)
-+++|..+|+.|.. ....|+.||-.+--.|.+..|...+....+.+. . .++...+++.
T Consensus 128 ~~~tr~~LLql~~~------~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~-~--------~~s~~~~e~se~~Ly~n 192 (700)
T KOG1156|consen 128 YLETRNQLLQLRPS------QRASWIGFAVAQHLLGEYKMALEILEEFEKTQN-T--------SPSKEDYEHSELLLYQN 192 (700)
T ss_pred HHHHHHHHHHhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--------CCCHHHHHHHHHHHHHH
Confidence 34555555555532 257899999999999999999999988765432 1 1122333333
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHH
Q 000194 1621 KYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAA 1700 (1880)
Q Consensus 1621 k~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~ 1700 (1880)
..+...|. .++|++.|.+.-..+... ....+..|..+.++++ .++....
T Consensus 193 ~i~~E~g~---~q~ale~L~~~e~~i~Dk---------------la~~e~ka~l~~kl~~-------------lEeA~~~ 241 (700)
T KOG1156|consen 193 QILIEAGS---LQKALEHLLDNEKQIVDK---------------LAFEETKADLLMKLGQ-------------LEEAVKV 241 (700)
T ss_pred HHHHHccc---HHHHHHHHHhhhhHHHHH---------------HHHhhhHHHHHHHHhh-------------HHhHHHH
Confidence 33344452 467777776533221100 0112345566665554 5677888
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcC
Q 000194 1701 YRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHG 1780 (1880)
Q Consensus 1701 y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g 1780 (1880)
|...+.-+|++..-+..+=....... --..++..-+..++ ..+....-||-+.|=|-.|
T Consensus 242 y~~Ll~rnPdn~~Yy~~l~~~lgk~~--------------d~~~~lk~ly~~ls-------~~y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 242 YRRLLERNPDNLDYYEGLEKALGKIK--------------DMLEALKALYAILS-------EKYPRHECPRRLPLSVLNG 300 (700)
T ss_pred HHHHHhhCchhHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHh-------hcCcccccchhccHHHhCc
Confidence 88888888876543322211111110 00122322222221 2455666777778777777
Q ss_pred CcHHHHHHHHhcc----c-CCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH----h------------hCchhhH
Q 000194 1781 ATEEVQIALQKGF----A-HVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIG----Q------------SHPQALM 1839 (1880)
Q Consensus 1781 ~~~~v~~~~~~~~----~-~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~----~------------~hPqa~l 1839 (1880)
. +..+.+.+++ + .+|+ +++-+.+--.+|. .+ .++.++++... - +=|-+++
T Consensus 301 e--el~~~vdkyL~~~l~Kg~p~-----vf~dl~SLyk~p~-k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 301 E--ELKEIVDKYLRPLLSKGVPS-----VFKDLRSLYKDPE-KV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred c--hhHHHHHHHHHHHhhcCCCc-----hhhhhHHHHhchh-Hh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 3 3443333332 2 1332 4445555555554 22 25555555543 2 3789999
Q ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHHhhcccccccc
Q 000194 1840 YPLLVACKSISN-LRRAAAQEVVDKVRQHSGVLVDQ 1874 (1880)
Q Consensus 1840 y~L~~~~kS~~~-~R~~~a~~Il~~~~~~~~~lv~~ 1874 (1880)
|-+..+++..+. .=-+.|..-++..-.|-|++|+.
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl 407 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL 407 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence 999888875443 22467888899888899998874
No 296
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=76.30 E-value=70 Score=39.35 Aligned_cols=229 Identities=17% Similarity=0.138 Sum_probs=118.5
Q ss_pred HHHHHh-hhcCCChhhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHhhcccCCCh-HHHHHHHHHHHHHhhhCCCCc
Q 000194 71 YDRISG-LLESNDAAENLGALRAIDELIDVALGENASKVSK--FSNYMRTVFEVKRDR-EILVLASKVLGHLARAGGAMT 146 (1880)
Q Consensus 71 ~~~i~~-l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~--~~~~L~~~l~~~~d~-~v~~~aa~~l~~L~~~~g~~~ 146 (1880)
...++. +++++ ...|.+|.-.+.-++.-. +....+.+ ..-|+-..+...+.. .=+..|-+-.-++....+ .
T Consensus 27 ~~~i~~~lL~~~-~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~--~ 101 (371)
T PF14664_consen 27 GERIQCMLLSDS-KEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK--G 101 (371)
T ss_pred HHHHHHHHCCCc-HHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC--C
Confidence 344443 44444 788999999998887542 11111221 223555666432222 235677777777777622 1
Q ss_pred hhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q 000194 147 ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 147 ~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1880)
++.++.-+-+++=-+.+..+++.|.+++..+.+++-..|..+... .=+..+..++.|+...+-+..+ ..++..+.
T Consensus 102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~--gG~~~L~~~l~d~~~~~~~~l~---~~lL~lLd 176 (371)
T PF14664_consen 102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAEC--GGIRVLLRALIDGSFSISESLL---DTLLYLLD 176 (371)
T ss_pred cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHc--CCHHHHHHHHHhccHhHHHHHH---HHHHHHhC
Confidence 122233333333333355677899999999999999999865421 2234556667775555534333 33444443
Q ss_pred hhchh--hHH-HHHHHHHHHHHhh--ccCCCCh--hHHHHHHHHHHHHHHcc-h--hhhHHHHHHHHHHHHHHhhcchhH
Q 000194 227 KRETR--WRV-QWYYRMFEATQDG--LGRNAPV--HSIHGSLLAVGELLRNT-G--EFMMSRYREVAEIVLRYLEHRDRL 296 (1880)
Q Consensus 227 ~r~~~--~~~-~~~~~~l~~~~~~--l~~~~~~--~~~~~al~~l~~ll~~~-~--~~~~~~~~~i~~~ll~~~~~~~~~ 296 (1880)
....+ .+. .-+..++....+- -...++. +...++..++..+++.= | -+..+.+ .-+..++..+..+++.
T Consensus 177 ~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ 255 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPE 255 (371)
T ss_pred CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHH
Confidence 22211 011 0112222211111 0111112 35667777887777732 2 1111222 2345566667778888
Q ss_pred HHHHHHHHhHhHhh
Q 000194 297 VRLSITSLLPRIAH 310 (1880)
Q Consensus 297 Vr~~~~~~i~~la~ 310 (1880)
+|+.+++++=.+-.
T Consensus 256 ir~~Ildll~dllr 269 (371)
T PF14664_consen 256 IRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHHHHHC
Confidence 88888876655443
No 297
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=76.13 E-value=1.4e+02 Score=37.67 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCC---CChhHHHHHHHHHHHHHH
Q 000194 193 AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRN---APVHSIHGSLLAVGELLR 269 (1880)
Q Consensus 193 ~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~al~~l~~ll~ 269 (1880)
.-++..|..++-+.++..|..|...|+. ++ .-.+.++.+..-+..+...+ .+-+..+-.+.++..|+.
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~T--------Ds-GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~ 276 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLET--------DS-GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD 276 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhcc--------Cc-cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc
Confidence 3344455555556888889998887652 21 11223333333344443332 234556666677888888
Q ss_pred cchhhhHHHHHHHHHHHHHHhhc----------chhHHHHHHHHHhHhHhhhChhhHHHHH---HHHHHHHHHHhhcCCC
Q 000194 270 NTGEFMMSRYREVAEIVLRYLEH----------RDRLVRLSITSLLPRIAHFLRDRFVTNY---LKICMNHILTVLRIPA 336 (1880)
Q Consensus 270 ~~~~~~~~~~~~i~~~ll~~~~~----------~~~~Vr~~~~~~i~~la~~~~~~f~~~y---l~~~~~~Ll~~L~~~~ 336 (1880)
+..=|+.+|+..+++.|+.+.-. +.-.+|.-+..++..++. +|...| -+.+...+...+.+++
T Consensus 277 Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k----~f~~~y~~L~~Rit~tl~k~l~D~~ 352 (576)
T KOG2549|consen 277 NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICK----NFSTLYNNLQPRITRTLSKALLDNK 352 (576)
T ss_pred CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 88889999999999998877622 334588888888887764 343333 2456666666665442
Q ss_pred -C---cchHHHHHHHHHhhchh-hhhhhhhHHHHHHHHhhc
Q 000194 337 -E---RDSGFIALGEMAGALDG-ELFHYLPTITSHLREAIA 372 (1880)
Q Consensus 337 -~---r~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~l~ 372 (1880)
. .-.|+.+|..++..+-+ -+.|.+..+...++..+.
T Consensus 353 ~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~ 393 (576)
T KOG2549|consen 353 KPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLD 393 (576)
T ss_pred CCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcc
Confidence 2 23445555554433222 244666666666666553
No 298
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=75.60 E-value=46 Score=34.62 Aligned_cols=110 Identities=14% Similarity=0.177 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH
Q 000194 559 EELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1880)
Q Consensus 559 ~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1880)
.+.+++...-...++|+..-..+++.++.... ...+.++.|-.-++..++.|...|+.+|..++++++..+...+
T Consensus 6 ~~~I~kATs~~l~~~dw~~ileicD~In~~~~-----~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 80 (142)
T cd03569 6 DELIEKATSELLGEPDLASILEICDMIRSKDV-----QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV 80 (142)
T ss_pred HHHHHHHcCcccCccCHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 33444433333457888888888888863211 2346788898889999999999999999999999876543322
Q ss_pred --HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc
Q 000194 639 --RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 639 --~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
++++..+..-+... .+++++...+.++..-+...+
T Consensus 81 as~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 81 ASREFMDELKDLIKTT-KNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred hhHHHHHHHHHHHccc-CCHHHHHHHHHHHHHHHHHhC
Confidence 33343333333333 567888888888888877654
No 299
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.26 E-value=37 Score=40.85 Aligned_cols=132 Identities=19% Similarity=0.206 Sum_probs=99.2
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh-CcccccC
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERLIRP 679 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~~~p 679 (1880)
+.-|..-+..-+..||..|..-+.++...+|..+.-.+... .+.+.++-.+ .+..+|.....++..++.. ++..+.|
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~l-l~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYAL-LQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHH-HHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 44455566777889999999999999998887765555543 3444444444 5677788888888887755 5556788
Q ss_pred chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHh
Q 000194 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL 739 (1880)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~ 739 (1880)
++.-++..+...+... .+.++...+..+..++...++.+..+...+++.+.+.+.
T Consensus 138 ~~~l~~~yi~~AMThi-----t~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-----TPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred hHHHHHHHHHHHHhhc-----cHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 8888888888887764 678888888899999998888887777777777777664
No 300
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=75.23 E-value=28 Score=31.99 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1571 ~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
.|...+......|+++.|...+.++....+. .+.+.+..+.+++..|+ ..+|++.++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD----------NADAYYNLAAAYYKLGK---YEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 5778889999999999999999888766442 34677788888888884 5789888887654
No 301
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.16 E-value=4.3e+02 Score=38.70 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=79.7
Q ss_pred CChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHH
Q 000194 700 ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779 (1880)
Q Consensus 700 ~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll 779 (1880)
.++..+-.+..+++.|+.+.|. .+|+..+...+++.+.+..+...|..-.-++|.+-++.|.. .+..++..-+..++
T Consensus 888 ~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~-~s~qhl~t~v~ill 964 (2067)
T KOG1822|consen 888 PNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI-GSGQHLNTSVSILL 964 (2067)
T ss_pred CChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC-CCchhcccHHHHHH
Confidence 3666777788899999988775 67888999999999988777778888889999998888875 45556666677888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHH
Q 000194 780 KMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 780 ~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
...++..++.|+.-+++.+..+
T Consensus 965 al~~Ds~~p~VqtwSL~al~~i 986 (2067)
T KOG1822|consen 965 ALATDSTSPVVQTWSLHALALI 986 (2067)
T ss_pred HHhhcCCCchhhhhHHHHHHHH
Confidence 8777777889999999888764
No 302
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=75.09 E-value=71 Score=42.83 Aligned_cols=116 Identities=12% Similarity=0.021 Sum_probs=84.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++.+...-++.+....|+++.|...+..+..+.|. +....+.++..|-..+ +-++|+...+..+..-
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd----------~~~a~~~~a~~L~~~~---~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD----------SSEAFILMLRGVKRQQ---GIEAGRAEIELYFSGG 150 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC----------cHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhcC
Confidence 44788888899999999999999999998888763 4677788888888777 4678888877765421
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
. ..+..+..+|.-+.++ ...++....|.++..-+|+..++|..||....
T Consensus 151 p----------------------~~~~~~~~~a~~l~~~------g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 151 S----------------------SSAREILLEAKSWDEI------GQSEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred C----------------------CCHHHHHHHHHHHHHh------cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1 1233344444444444 23578889999998888888999999987644
No 303
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=74.85 E-value=19 Score=36.90 Aligned_cols=89 Identities=16% Similarity=0.019 Sum_probs=50.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hh---h-hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-EL---D-VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~---~-~~~~~~~~ 1364 (1880)
.++....+.+.|..|+.+++..... ++........+..+|..+|+.+.+.-.+..... .. + .-..+..|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455566667777777776654432 123345556677777777777766665553321 10 0 01122346
Q ss_pred HHhcCHHHHHHHHHHHHhcc
Q 000194 1365 EKLQRWDDALKAYTNKASQA 1384 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~ 1384 (1880)
.+.|+|++|+..|+..+...
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 67777777777777666543
No 304
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=73.97 E-value=1e+02 Score=36.50 Aligned_cols=192 Identities=13% Similarity=0.043 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.+-+-++.-|..|+++.|-.+..++......... ....--.++.+-..+.+++ ..+|+..+++-+.-...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----~~~Aa~~~~~Aa~~~k~~~---~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD-----KFEAAKAYEEAANCYKKGD---PDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHh
Confidence 567777778888888888887777665432110000 0012233445555566663 57899988876654321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
......-|+++..+|+..... ...+++.+++|++|.++.....+. +.-+.+..++...
T Consensus 107 ----------------~G~~~~aA~~~~~lA~~ye~~-----~~d~e~Ai~~Y~~A~~~y~~e~~~-~~a~~~~~~~A~l 164 (282)
T PF14938_consen 107 ----------------AGRFSQAAKCLKELAEIYEEQ-----LGDYEKAIEYYQKAAELYEQEGSP-HSAAECLLKAADL 164 (282)
T ss_dssp ----------------CT-HHHHHHHHHHHHHHHCCT-----T--HHHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHH
T ss_pred ----------------cCcHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHHHHHH
Confidence 233566799999999988643 146899999999999887654422 2222222222222
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchH-HhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL-QDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~-q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
+... .-...|++.|-+.+...-.....++.. +..++.+-+++-.|+.....+.+.++...-|
T Consensus 165 ~~~l-------~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 165 YARL-------GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHT-------T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHh-------CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2111 123577888877665421111123333 3457777788888887777777777665544
No 305
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.67 E-value=18 Score=45.81 Aligned_cols=198 Identities=18% Similarity=0.142 Sum_probs=102.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC-C
Q 000194 1572 WLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC-P 1650 (1880)
Q Consensus 1572 ~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~-~ 1650 (1880)
..+..+.+=.-+.++.|.+++..+.+.+|-.- .-.--|.-.||+..+ .-++..|-+-+.+.... +
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv----------~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~~~sP 421 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRV----------KGMEIYSTTLWHLQD----EVALSYLAQDLIDTDPNSP 421 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----------cchhHHHHHHHHHHh----hHHHHHHHHHHHhhCCCCc
Confidence 34555555566778888888777665544210 011236677887753 45777775433222211 1
Q ss_pred ----------cccccccc--c-cccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH
Q 000194 1651 ----------VIQSAAST--S-LTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS 1717 (1880)
Q Consensus 1651 ----------~~~~~~~~--~-~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~ 1717 (1880)
+.|..... . |... ..-.+-.|=+|.++|.=... .+..+..+++|++|+..+|..|.||+.
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RA-iQldp~faYayTLlGhE~~~------~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRA-IQLDPRFAYAYTLLGHESIA------TEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHh-hccCCccchhhhhcCChhhh------hHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 00100000 0 0000 00011133446666654332 256788999999999999999999999
Q ss_pred HHHHHHHHHH-----hhhc---cCCCC------------chhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHH
Q 000194 1718 WALFNTAVMS-----HYTL---RGLPS------------VAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWF 1777 (1880)
Q Consensus 1718 wA~~n~~~~~-----~~~~---~~~~~------------~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf 1777 (1880)
.+..+.+.=+ ++=+ .-+|. .....-..|+.-|=+|+-+. +++.+- ...--.+.|
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~-~~~~~~il~ 568 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLC-KYHRASILF 568 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchh-HHHHHHHHH
Confidence 9877544211 0000 00111 11234457788888887764 344442 334455666
Q ss_pred hcCCcHHHHHHHHhcccCC
Q 000194 1778 NHGATEEVQIALQKGFAHV 1796 (1880)
Q Consensus 1778 ~~g~~~~v~~~~~~~~~~i 1796 (1880)
..+...+....+++--.-+
T Consensus 569 ~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELV 587 (638)
T ss_pred hhcchHHHHHHHHHHHHhC
Confidence 6666666555555443333
No 306
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=73.59 E-value=2.2e+02 Score=34.62 Aligned_cols=198 Identities=17% Similarity=0.162 Sum_probs=97.9
Q ss_pred hCCCCCCCc---chhhHHHHHHHhcCCcchhHHHHHHHHHHHHH---HHHhH-HHhHHHHHHHHHHhhcCCCCCcccccc
Q 000194 889 MGLGCVPYL---PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI---VRQHI-RKYLQELFSLISELWSSFSLPATNRTY 961 (1880)
Q Consensus 889 ~~~~~~~~l---~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~---~~~~i-~~y~~~i~~~i~~~~~~~~~~~~~~~~ 961 (1880)
.|.....|| |+++..+..+++..+.++.-...-++|.+++. ..+.+ ..++..+++++.+.=...+ + -.
T Consensus 302 tGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdg--n---V~ 376 (604)
T KOG4500|consen 302 TGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDG--N---VE 376 (604)
T ss_pred cCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCc--c---ch
Confidence 466555555 67888889999887766555555566777663 22222 2456666666654211111 0 01
Q ss_pred cchhHHHHHHHHHHHh--hhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcc-------hhhhhhhhHHH
Q 000194 962 RGLPVLHLVQQLCLAL--NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT-------LDEHMHLLLPA 1032 (1880)
Q Consensus 962 ~~~~~l~~i~~l~~~l--~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~-------~~~~~~~ilp~ 1032 (1880)
++-.+++++..++.-. +.+|.| .-+...++..++-. ...+..+.+.++.-+-.. +.++. ..+..
T Consensus 377 ~qhA~lsALRnl~IPv~nka~~~~--aGvteaIL~~lk~~----~ppv~fkllgTlrM~~d~qe~~a~eL~kn~-~l~ek 449 (604)
T KOG4500|consen 377 RQHACLSALRNLMIPVSNKAHFAP--AGVTEAILLQLKLA----SPPVTFKLLGTLRMIRDSQEYIACELAKNP-ELFEK 449 (604)
T ss_pred hHHHHHHHHHhccccCCchhhccc--cchHHHHHHHHHhc----CCcchHHHHHHHHHHHhchHHHHHHHhcCH-HHHHH
Confidence 2223455554443222 233433 12333344444321 123455555555432211 11211 24556
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhhcccccccchhH-----hHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 000194 1033 LIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHIS-----SLVHHLKLVLDGKNDELRKDAVDALCCLAHA 1098 (1880)
Q Consensus 1033 l~~~l~~~~~~~vr~~ai~~l~~l~~~~~~~~~~~-----~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~ 1098 (1880)
++.|-+......|--.+.+++.-+.+....++.+- ..|..++..+..++-.+.+.|+-+|+.+...
T Consensus 450 Lv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 450 LVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred HHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 66776654444455555666666655432222111 1234455555555667788888888877654
No 307
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=73.46 E-value=2.2e+02 Score=34.67 Aligned_cols=69 Identities=20% Similarity=0.004 Sum_probs=47.2
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
..++.+..++..+.+|....+++.++..=.... =...-+.+++.+.+||.|.++.||++...+++.++.
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 345555566666777776666655554433222 112235677888899999999999999999998875
No 308
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=73.25 E-value=1.8e+02 Score=35.75 Aligned_cols=232 Identities=17% Similarity=0.145 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHhcc---CCCCcchhhccHhhHHHHHHHhC-CC-CHhHHHHHHHHHHhhhcC--Cc
Q 000194 559 EELVEKLLIAAVADADVTVRHSIFSSLY---GNRGFDDFLAQADCLSAIFAALN-DE-DFDVREYAISVAGRLSEK--NP 631 (1880)
Q Consensus 559 ~~vl~~Ll~~~~~d~~~~vR~~~l~~l~---~~~~fd~~L~~~~~l~~L~~~l~-D~-~~~VR~~a~~~l~~l~~~--~p 631 (1880)
....+++......|+ .+||.+.++.+. .+..+-..+-+-.+--++..++. |. +..-|+.|++++.++.+. .|
T Consensus 24 ~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 334444444445555 999999888773 11111111111111112223332 32 345699999999999888 44
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHH
Q 000194 632 AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVT 711 (1880)
Q Consensus 632 ~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~ 711 (1880)
..+-..+-+.+. ...++ .+.+.|..+.+.|.+++-..|+.+..- .-+..++..+.++ ..++.+.++.+
T Consensus 103 ~~~~~~vvralv---aiae~--~~D~lr~~cletL~El~l~~P~lv~~~--gG~~~L~~~l~d~-----~~~~~~~l~~~ 170 (371)
T PF14664_consen 103 KEIPRGVVRALV---AIAEH--EDDRLRRICLETLCELALLNPELVAEC--GGIRVLLRALIDG-----SFSISESLLDT 170 (371)
T ss_pred ccCCHHHHHHHH---HHHhC--CchHHHHHHHHHHHHHHhhCHHHHHHc--CCHHHHHHHHHhc-----cHhHHHHHHHH
Confidence 444333333222 22233 355678889999999886655443110 1123444444443 22244444444
Q ss_pred HHHHHHhcCCchhhhHHh--HHHHHHHHHhcC------Cch--hhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHH
Q 000194 712 VGDLARVGGFGMRQYISE--LMPLIVEALLDG------AAV--TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1880)
Q Consensus 712 l~~La~~~g~~~~~~~~~--l~p~l~~~l~d~------~~~--~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1880)
+=.+.. .+....|+.. =+..++..+.|. .+. ++-..+..++..+.++-...+.--..-..-+..|+..
T Consensus 171 lL~lLd--~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~ 248 (371)
T PF14664_consen 171 LLYLLD--SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDS 248 (371)
T ss_pred HHHHhC--CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHH
Confidence 333322 2223333221 133344444332 111 2334566777776666544321111101568888888
Q ss_pred hcCCCCHHHHHHHHHHHHHHcccCc
Q 000194 782 LNGELVWSTRREVLKVLGIMGALDP 806 (1880)
Q Consensus 782 L~~~~~~~vr~~~l~~lg~lgaldp 806 (1880)
|..+ +.++|..++..+-.+--+.+
T Consensus 249 L~~p-~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 249 LRLP-NPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred HcCC-CHHHHHHHHHHHHHHHCCCC
Confidence 8765 67899999988876654443
No 309
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=73.14 E-value=2.4e+02 Score=37.79 Aligned_cols=129 Identities=17% Similarity=0.212 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcC
Q 000194 126 EILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRD 205 (1880)
Q Consensus 126 ~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D 205 (1880)
-++..+--++|+|+...+.+...+++-.++ -|+-......|---+.+.+.++.+ + ...+...+|.|-..|+|
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr~~P~lvk----eLe~~~~~aiRnNiV~am~D~C~~---Y-Tam~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKRLMPMLVK----ELEYNTAHAIRNNIVLAMGDICSS---Y-TAMTDRYIPMIAASLCD 1017 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHhhhHHHHhcceeeeehhhHHH---H-HHHHHHhhHHHHHHhcC
Confidence 345555568888877644333323333222 222111222333333333333322 1 12356778899999999
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000194 206 PTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1880)
Q Consensus 206 ~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1880)
|.+.||+.+..-|..+++ ++ ...|--.++=..+..+-+.+ .+++.-|=..+++++..
T Consensus 1018 p~~iVRrqt~ilL~rLLq----~~---~vKw~G~Lf~Rf~l~l~D~~-edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQ----FG---IVKWNGELFIRFMLALLDAN-EDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred chHHHHHHHHHHHHHHHh----hh---hhhcchhhHHHHHHHHcccC-HHHHHHHHHHHHHHHhh
Confidence 999999999887776654 22 12343333333333333332 46777777778877763
No 310
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=72.59 E-value=4.1 Score=30.90 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=17.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 000194 1361 ESWYEKLQRWDDALKAYTNKA 1381 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~ 1381 (1880)
+..|.+.|+|++|.++|++.+
T Consensus 6 g~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 6 GRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 446999999999999999955
No 311
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=72.57 E-value=38 Score=43.50 Aligned_cols=203 Identities=18% Similarity=0.156 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHH
Q 000194 1616 MYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIP 1695 (1880)
Q Consensus 1616 ~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~ 1695 (1880)
.+=.+.++-..|+ -.+|+..|++....+-. ...-.+.+|++++++|++ +
T Consensus 7 lLY~~~il~e~g~---~~~AL~~L~~~~~~I~D---------------k~~~~E~rA~ll~kLg~~-------------~ 55 (517)
T PF12569_consen 7 LLYKNSILEEAGD---YEEALEHLEKNEKQILD---------------KLAVLEKRAELLLKLGRK-------------E 55 (517)
T ss_pred HHHHHHHHHHCCC---HHHHHHHHHhhhhhCCC---------------HHHHHHHHHHHHHHcCCH-------------H
Confidence 3334556666674 67999999874433211 112246788999888886 5
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHH
Q 000194 1696 EIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTL 1775 (1880)
Q Consensus 1696 ~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtL 1775 (1880)
+....|...++.+|++..-+..+....--... . .+ .. ......+...+. ..+...+.+|-+-|
T Consensus 56 eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~-~-----~~---~~-~~~~~~~y~~l~-------~~yp~s~~~~rl~L 118 (517)
T PF12569_consen 56 EAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ-L-----SD---ED-VEKLLELYDELA-------EKYPRSDAPRRLPL 118 (517)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc-c-----cc---cc-HHHHHHHHHHHH-------HhCccccchhHhhc
Confidence 67789999999999988777766544311100 0 00 11 122223333332 24556677888887
Q ss_pred HHhcCCcH--HHHHHHHhcc-cCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH----------------hhCch
Q 000194 1776 WFNHGATE--EVQIALQKGF-AHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIG----------------QSHPQ 1836 (1880)
Q Consensus 1776 wf~~g~~~--~v~~~~~~~~-~~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~----------------~~hPq 1836 (1880)
=|-.|+.- .+..-+...+ +.||+ .|-.+-|-. ..+ .=..++.+|+..+. .+-|.
T Consensus 119 ~~~~g~~F~~~~~~yl~~~l~KgvPs-lF~~lk~Ly----~d~--~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~ 191 (517)
T PF12569_consen 119 DFLEGDEFKERLDEYLRPQLRKGVPS-LFSNLKPLY----KDP--EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPS 191 (517)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHH----cCh--hHHHHHHHHHHHHHHhhcccCCCCCccccccCCch
Confidence 77765421 1111122222 22332 333333311 122 22456666666653 34588
Q ss_pred hhHHHHHHHhcCC-cHHHHHHHHHHHHHHhhccccccc
Q 000194 1837 ALMYPLLVACKSI-SNLRRAAAQEVVDKVRQHSGVLVD 1873 (1880)
Q Consensus 1837 a~ly~L~~~~kS~-~~~R~~~a~~Il~~~~~~~~~lv~ 1873 (1880)
..+|-+..++.-- .......|.+.+++.-.|.|++|+
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e 229 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE 229 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH
Confidence 8899777665422 223455899999999999999885
No 312
>PRK11189 lipoprotein NlpI; Provisional
Probab=72.54 E-value=1.6e+02 Score=35.08 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1632 ~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
.+.++..+.+++.... .++...++.|..+|.-.... ...++....|.+|++++|+.
T Consensus 42 ~e~~i~~~~~~l~~~~------------------~~~~~~a~~~~~~g~~~~~~------g~~~~A~~~~~~Al~l~P~~ 97 (296)
T PRK11189 42 QEVILARLNQILASRD------------------LTDEERAQLHYERGVLYDSL------GLRALARNDFSQALALRPDM 97 (296)
T ss_pred HHHHHHHHHHHHcccc------------------CCcHhhHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHcCCCC
Confidence 4678888877664321 11234566677777655443 34577888999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000194 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1880)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1880)
..+|+.+|.+.... .-...|+..|-+++.+. +++ ......+-.+++..|...+..+.+++
T Consensus 98 ~~a~~~lg~~~~~~--------------g~~~~A~~~~~~Al~l~-----P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 98 ADAYNYLGIYLTQA--------------GNFDAAYEAFDSVLELD-----PTY-NYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999775531 12347899999999885 333 33445555666777888787777888
Q ss_pred cccCCChh
Q 000194 1792 GFAHVNIN 1799 (1880)
Q Consensus 1792 ~~~~ip~~ 1799 (1880)
.+..=|.+
T Consensus 158 al~~~P~~ 165 (296)
T PRK11189 158 FYQDDPND 165 (296)
T ss_pred HHHhCCCC
Confidence 77666654
No 313
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=72.10 E-value=38 Score=34.86 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=66.7
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHH
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLT 647 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~ 647 (1880)
..++|+..-..+++.++... - ...+.++.|-.-++..++.|...|+.+|..++++++..+...+ ++++..+..
T Consensus 13 l~~~dw~~~l~icD~i~~~~-~----~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 13 LLEEDWELILEICDLINSTP-D----GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred CCCcCHHHHHHHHHHHhCCC-c----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH
Confidence 34677777777788775321 1 1246788888889999999999999999999999876543322 233433333
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHHhCc
Q 000194 648 YLEQSSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
-+......+.++...+.++..-+...+
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 333331223378888888887777654
No 314
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=71.56 E-value=19 Score=35.68 Aligned_cols=92 Identities=8% Similarity=0.029 Sum_probs=55.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCC-ChHHHHhHHHHHHHHHHHc
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPA-EPAARLEMAPMAANAAWNM 1440 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~-~~~~~~~~~~~~a~aaw~l 1440 (1880)
..+.+.|+|++|...|+......++.....+....+-+|+.+.|+|+......+..-... +...........+.+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 89 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL 89 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh
Confidence 346778899999999988876543321112345667888899999887666655432110 1000112233445677778
Q ss_pred CChhhHHHHHhhc
Q 000194 1441 GEWDQMAEYVSRL 1453 (1880)
Q Consensus 1441 ~~Wd~~~~~~~~~ 1453 (1880)
|+++....+....
T Consensus 90 ~~~~~A~~~~~~~ 102 (119)
T TIGR02795 90 GDKEKAKATLQQV 102 (119)
T ss_pred CChHHHHHHHHHH
Confidence 8888876665543
No 315
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.47 E-value=46 Score=34.73 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=68.9
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHHH
Q 000194 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTY 648 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~ 648 (1880)
.++|+.+-..++..++.. .-. ..+.++.|..-++..++.|...|+.+|..++++++..+...+ +.++..+..-
T Consensus 14 ~~~dw~~il~icD~I~~~-~~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl 88 (144)
T cd03568 14 TSENWGLILDVCDKVKSD-ENG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKL 88 (144)
T ss_pred CCcCHHHHHHHHHHHhcC-Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHH
Confidence 457777777888877632 111 246788888888999999999999999999999987554332 3334333333
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCc
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
+... ....++...+.++...+...+
T Consensus 89 ~~~~-~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 89 INDR-VHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred hccc-CCHHHHHHHHHHHHHHHHHhC
Confidence 3343 567788888888888877665
No 316
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=70.73 E-value=7.1e+02 Score=39.27 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHhhcccccc-----cchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000194 1042 PVDIRRAAIETLTRLIPRVQV-----TGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1880)
Q Consensus 1042 ~~~vr~~ai~~l~~l~~~~~~-----~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1880)
...+|..++++++..+...++ .++-..|+-.+...+.++.+++...+..++....
T Consensus 1246 l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1246 LVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVL 1305 (3550)
T ss_pred cccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Confidence 345688888888887776554 4577788888888888777888777777665444
No 317
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=70.45 E-value=37 Score=32.33 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=57.5
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000194 240 MFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1880)
Q Consensus 240 ~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~ 315 (1880)
.+..+...+.++. .-+|-.++..|..|++... ......+.++..++..+++.++.|=..|+..+..+|...|+.
T Consensus 4 ~~~~al~~L~dp~-~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 4 TLQEALSDLNDPL-PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHccCCC-cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 3455666677765 4567788889999998554 444567778888899999999999999999999999876653
No 318
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=69.73 E-value=46 Score=36.23 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=61.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh---cCC-CChHHHHhHHHHHHHHH
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY---WTP-AEPAARLEMAPMAANAA 1437 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~---~~~-~~~~~~~~~~~~~a~aa 1437 (1880)
..|.+.|+.++|+++|.+.......+....+....++|-.-..|.|..+..+.... ... .+.+.+..+.-+.+-+.
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~ 123 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLAN 123 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34899999999999999976654444444677889999999999999998776532 111 12344555666666666
Q ss_pred HHcCChhhHHH
Q 000194 1438 WNMGEWDQMAE 1448 (1880)
Q Consensus 1438 w~l~~Wd~~~~ 1448 (1880)
...+++..-.+
T Consensus 124 l~~r~f~~AA~ 134 (177)
T PF10602_consen 124 LAQRDFKEAAE 134 (177)
T ss_pred HHhchHHHHHH
Confidence 77777766544
No 319
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=69.69 E-value=23 Score=37.10 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=44.7
Q ss_pred hhhhhhHHHHHHhhcCCC---cHHHHHHHHHHHHhhcccccccchhH-hHHHHHHHhhCCCCHHHHHHHHHHH
Q 000194 1024 EHMHLLLPALIRLFKVDA---PVDIRRAAIETLTRLIPRVQVTGHIS-SLVHHLKLVLDGKNDELRKDAVDAL 1092 (1880)
Q Consensus 1024 ~~~~~ilp~l~~~l~~~~---~~~vr~~ai~~l~~l~~~~~~~~~~~-~ii~~l~~~l~~~~~~l~~~al~~L 1092 (1880)
+..+.++..+.+++.... ..++...++++++......+...... .+++.+...+. +++++..|.++|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 334445555555554432 27889999999999888766555433 47777778884 556788888876
No 320
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=69.50 E-value=11 Score=32.99 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=37.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
.+.+.|+|++|.++|++.+...++ ..+...++-+|+...|+|+.-....+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 477889999999999998865433 25677888899999999977665544
No 321
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.25 E-value=34 Score=39.55 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=62.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh--hhh---hcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL--DVQ---LKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~--~~~---~~~~~~ 1364 (1880)
.+++.-.+-|++-+|=-.+.....+. ...+++-.|.+.|..+++|..+--+....-... +++ -.+..|
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~-------~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF-------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC-------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 56777777777777766555544332 235788899999999999998866554221111 222 234569
Q ss_pred HHhcCHHHHHHHHHHHHhccCC
Q 000194 1365 EKLQRWDDALKAYTNKASQASN 1386 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~ 1386 (1880)
|.+++.++|++.|+..+...++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI 322 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc
Confidence 9999999999999998876544
No 322
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.19 E-value=5.2e+02 Score=37.09 Aligned_cols=247 Identities=11% Similarity=0.121 Sum_probs=117.8
Q ss_pred CCChHHHHHHHHHHHHHhhh--C-CCCchhHHHHHHHHH---HhhhcCCCcc-hhHHHHHHHHHHHHhhcCccc------
Q 000194 122 KRDREILVLASKVLGHLARA--G-GAMTADEVEFQVKMA---LDWLRGDRVE-YRRFAAVLILKEMAENASTVF------ 188 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~--~-g~~~~~~v~~~~~~~---~~~l~~~~~~-~~R~aA~~~l~~la~~~p~~l------ 188 (1880)
..|.+|+-..|-|+..+.+. + ...+...+...+... +..|.+..++ -.|+. .+|..++...+-.+
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~--~lletl~~~k~~l~~~l~d~ 138 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYF--YLLETLAKVKFCLLMLLEDC 138 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHH--HHHHHHHHhHHHheeeccch
Confidence 45888999999999877664 2 112222222222222 2222222221 12222 23334443322111
Q ss_pred hhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-HHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000194 189 NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR-VIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1880)
Q Consensus 189 ~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~-~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1880)
...+..++..++..++++++.--.. +.+++. ++. .......+.+..++..+...-.++ +-+|..+=..+
T Consensus 139 ~e~~~~~f~~f~d~~~~~~~~~v~~----~~~i~~~li~-e~d~v~~e~L~~ll~~lv~~~~~~-----~~~a~~la~~l 208 (1266)
T KOG1525|consen 139 QELVHELFRTFFDLARKGHPKKVFN----MLDIAIMLIT-EEDTVQSELLDVLLENLVKPGRDT-----IKEADKLASDL 208 (1266)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHH----HHHHHHHHHH-hhccchHHHHHHHHHHhccCCCCc-----cHHHHHHHHHH
Confidence 2356677777777888888754222 333332 222 222244455566666555543332 33444333444
Q ss_pred HHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHH
Q 000194 268 LRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIAL 345 (1880)
Q Consensus 268 l~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~al 345 (1880)
++.+++.+.+.+...+...+..-..+-..++.-.-.+|-.|-..+|+ -+-.++|+|..-|..+. .|-.|...+
T Consensus 209 i~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~-----ll~~vip~l~~eL~se~~~~Rl~a~~lv 283 (1266)
T KOG1525|consen 209 IERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ-----LLLAVIPQLEFELLSEQEEVRLKAVKLV 283 (1266)
T ss_pred HHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 55444444443333332222211222233333444455555544443 34567777776665543 588888888
Q ss_pred HHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHH
Q 000194 346 GEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALAC 385 (1880)
Q Consensus 346 g~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~ 385 (1880)
|.|-..-+..+..--+++.......+.+....++.+.+++
T Consensus 284 g~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~ 323 (1266)
T KOG1525|consen 284 GRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVES 323 (1266)
T ss_pred HHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHH
Confidence 8876665554432234444444444545444444333333
No 323
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=69.15 E-value=3.7e+02 Score=35.33 Aligned_cols=55 Identities=13% Similarity=0.358 Sum_probs=40.3
Q ss_pred CcchhhHHHHH--HHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhc
Q 000194 896 YLPKVLPDLFH--TVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWS 950 (1880)
Q Consensus 896 ~l~~iip~ll~--~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~ 950 (1880)
++|-++..++. .+++.+..+|...-..+..++..++..+.||+++|.+.|.+.+.
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444444443 24555666776666677889999999999999999999998883
No 324
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.61 E-value=29 Score=41.75 Aligned_cols=115 Identities=17% Similarity=0.190 Sum_probs=89.0
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc-C
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-G 720 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-g 720 (1880)
+-+++..+.+- ....|..|+..|-++..+.+..+.-....+++.+.+...|. +..++......+..+.... .
T Consensus 60 lkeLl~qlkHh--NakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~-----~~~vR~~~~qll~~~i~~~~~ 132 (393)
T KOG2149|consen 60 LKELLSQLKHH--NAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDD-----DSLVRDALYQLLDSLILPACK 132 (393)
T ss_pred HHHHHhhhcCc--hHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCc-----cccHHHHHHHHHHHHHhhcch
Confidence 34455556554 57888899999999888877666666777777777777775 6778888888877755544 4
Q ss_pred CchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc
Q 000194 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1880)
Q Consensus 721 ~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~ 764 (1880)
+++.|++.-++|.+..+|... ..+.|.-++..|..++...+..
T Consensus 133 e~~sp~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 133 EDQSPMVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred hhhcchHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHcChH
Confidence 557999999999999999875 5789999999999998877543
No 325
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=68.36 E-value=31 Score=42.41 Aligned_cols=107 Identities=20% Similarity=0.036 Sum_probs=74.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.-|..+...+.|..|+.+.+...... ++.....-.+...|..+|+.+.|...+..+... .. .-..+..|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD------PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 45788889999999998887776532 344567778889999999999998887754321 10 11234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA 1405 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg 1405 (1880)
.++|+|++|+..|++.+...++. .+...-+-+|...+-
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGD---SRFTKLIKECDEKIA 118 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHH
Confidence 88999999999999988754443 233344455655553
No 326
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=68.23 E-value=1.2e+02 Score=38.86 Aligned_cols=134 Identities=21% Similarity=0.273 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc
Q 000194 1547 RNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL 1626 (1880)
Q Consensus 1547 ~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~ 1626 (1880)
.|+..-..||..- .-..|+ .-+.|+--.++--.+..++.|...|.++.... +.++|-+-++++.|.+
T Consensus 598 gdv~~ar~il~~a-f~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s-----------gTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 598 GDVPAARVILDQA-FEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS-----------GTERVWMKSANLERYL 664 (913)
T ss_pred CCcHHHHHHHHHH-HHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC-----------CcchhhHHHhHHHHHh
Confidence 4555444444322 222344 46889999999999999999999988876532 3579999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh
Q 000194 1627 GEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706 (1880)
Q Consensus 1627 g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~ 1706 (1880)
|+ .++|++.|++-++.+ +..-|.|+.+|.-..+. +.++.....|..-++
T Consensus 665 d~---~eeA~rllEe~lk~f----------------------p~f~Kl~lmlGQi~e~~------~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 665 DN---VEEALRLLEEALKSF----------------------PDFHKLWLMLGQIEEQM------ENIEMAREAYLQGTK 713 (913)
T ss_pred hh---HHHHHHHHHHHHHhC----------------------CchHHHHHHHhHHHHHH------HHHHHHHHHHHhccc
Confidence 95 689999998766543 23457799999987765 467888899999999
Q ss_pred hcccchHHHHHHHHHHHH
Q 000194 1707 CATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1707 ~~~~~~k~w~~wA~~n~~ 1724 (1880)
.+|...--|..+|..-..
T Consensus 714 ~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred cCCCCchHHHHHHHHHHH
Confidence 999999999999876443
No 327
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=68.13 E-value=6.5 Score=29.41 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.1
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1700 AYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1700 ~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
.|++|++++|++..+|+.+|.+...
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN 25 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999987654
No 328
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=68.05 E-value=92 Score=33.64 Aligned_cols=116 Identities=15% Similarity=0.016 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000194 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1880)
Q Consensus 1613 ~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~ 1692 (1880)
....+..+..++..|+ ..+|+..+++.+...... ...+.++..+|.=.... .
T Consensus 35 a~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~la~~~~~~------g 86 (172)
T PRK02603 35 AFVYYRDGMSAQADGE---YAEALENYEEALKLEEDP-------------------NDRSYILYNMGIIYASN------G 86 (172)
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcc-------------------chHHHHHHHHHHHHHHc------C
Confidence 4556778888888885 689999998876431100 00122333334333322 2
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
..++....|.+|++.+|+...+|..+|......-+.....++.+....+...|+..|-+++...
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 3467888999999999999999888887765543222111111122234556777777766653
No 329
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=67.87 E-value=17 Score=46.51 Aligned_cols=168 Identities=20% Similarity=0.170 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChH
Q 000194 47 LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDRE 126 (1880)
Q Consensus 47 l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~ 126 (1880)
|-.+++.....++++.+ .++|+..+...+...+..-|.-.+.++..|+...+.+ +.-.....|+..+-+ +.+..
T Consensus 350 LL~~i~~~i~~Lt~~~~---~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~-d~~~~ 423 (690)
T KOG1243|consen 350 LLQYIEKYIDHLTKQIL---NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQP-DEHGG 423 (690)
T ss_pred HHHhHHHHhhhcCHHhh---cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCc-cccCc
Confidence 55666666667776644 3456676667777788888888999999998875322 111233445555544 55678
Q ss_pred HHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhh-hcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcC
Q 000194 127 ILVLASKVLGHLARAGGAMTADEVEFQVKMALDW-LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRD 205 (1880)
Q Consensus 127 v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~-l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D 205 (1880)
++....-|+|+++..-. +..-...+..++.- + .+.-..-|.|++..+....+.- .....-.+|+|.+.....|
T Consensus 424 irtntticlgki~~~l~---~~~R~~vL~~aftral-kdpf~paR~a~v~~l~at~~~~--~~~~va~kIlp~l~pl~vd 497 (690)
T KOG1243|consen 424 IRTNTTICLGKIAPHLA---ASVRKRVLASAFTRAL-KDPFVPARKAGVLALAATQEYF--DQSEVANKILPSLVPLTVD 497 (690)
T ss_pred ccccceeeecccccccc---hhhhccccchhhhhhh-cCCCCCchhhhhHHHhhccccc--chhhhhhhccccccccccC
Confidence 88888888888876411 10001111111111 1 2334467899988876544432 2344556788888888899
Q ss_pred CchhHHHHHHHHHHHHHHHHh
Q 000194 206 PTLAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 206 ~~~~VR~aA~~al~~~~~~i~ 226 (1880)
++..||..|..+++.++..+.
T Consensus 498 ~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 498 PEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred cccchhhHHHHHHHHHHhhhh
Confidence 999999999999998876554
No 330
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=67.79 E-value=2.5e+02 Score=38.63 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=83.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
...+.|..++......|+++.|...+.......|+ .+.+.+-.+-+....++. .++... .++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~----------~i~~yy~~G~l~~q~~~~---~~~~lv--~~l~~~ 93 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK----------SISALYISGILSLSRRPL---NDSNLL--NLIDSF 93 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc----------ceehHHHHHHHHHhhcch---hhhhhh--hhhhhc
Confidence 45788888899999999999999998887776653 233333333344444432 222221 222222
Q ss_pred cCCCcccccccccccc---ccCcc---hhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTT---ATSTN---VPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~---~~~~~---~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1880)
....+-.-. ..+.. ...++ -..+|.||-++|++ ++....|.++++++|++.-+--++|+
T Consensus 94 ~~~~~~~~v--e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~-------------~ka~~~yer~L~~D~~n~~aLNn~AY 158 (906)
T PRK14720 94 SQNLKWAIV--EHICDKILLYGENKLALRTLAEAYAKLNEN-------------KKLKGVWERLVKADRDNPEIVKKLAT 158 (906)
T ss_pred ccccchhHH--HHHHHHHHhhhhhhHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 211100000 00000 00011 12356666666554 56788999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCchhhHHHHHHHHHH
Q 000194 1721 FNTAVMSHYTLRGLPSVAPQFVVHAVTGYF 1750 (1880)
Q Consensus 1721 ~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~ 1750 (1880)
+..+. +.. ...+|...||.-|.
T Consensus 159 ~~ae~-dL~-------KA~~m~~KAV~~~i 180 (906)
T PRK14720 159 SYEEE-DKE-------KAITYLKKAIYRFI 180 (906)
T ss_pred HHHHh-hHH-------HHHHHHHHHHHHHH
Confidence 98765 321 12345566665554
No 331
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.77 E-value=1.9e+02 Score=41.12 Aligned_cols=219 Identities=13% Similarity=0.138 Sum_probs=130.0
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~ 190 (1880)
+...++++. ..|+.....|-+.++.+.....+..-..+-.+......-+--+.+...|.+...++..+...+.+.+.|
T Consensus 43 l~~I~kkL~--KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 43 LDIIVKKLL--KRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHh--ccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334455554 357777777888888887753222211111111111111224566678999999999999999999999
Q ss_pred chHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHh--------hccCC-----C-----
Q 000194 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD--------GLGRN-----A----- 252 (1880)
Q Consensus 191 ~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~--------~l~~~-----~----- 252 (1880)
|+..+++..+.+--|+...|-.+|..+++.+..--..|.. -..+-..+++-+.+ .+.+. .
T Consensus 121 ~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v--~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k 198 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHV--WFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESK 198 (1312)
T ss_pred HHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHH--HHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHh
Confidence 9999999999999999999999999998887762211111 00111222222221 12210 0
Q ss_pred ChhHHHHHHHHHHHHHHcchhh--hH---HHHHHH--HHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHH
Q 000194 253 PVHSIHGSLLAVGELLRNTGEF--MM---SRYREV--AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICM 325 (1880)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~--~~---~~~~~i--~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~ 325 (1880)
..++.-.++.++..+..+.++. +. +.+.-+ .+.+-.+..++.+.|+.+..+++-.+....+..+.+.-...+.
T Consensus 199 ~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~ 278 (1312)
T KOG0803|consen 199 YQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLK 278 (1312)
T ss_pred hHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhh
Confidence 1245667777887777654421 11 111111 2244466688999999999888888877666544443333444
Q ss_pred HHHHHhhc
Q 000194 326 NHILTVLR 333 (1880)
Q Consensus 326 ~~Ll~~L~ 333 (1880)
+.+...++
T Consensus 279 ~~~~~~~~ 286 (1312)
T KOG0803|consen 279 PVLLGSID 286 (1312)
T ss_pred HHHHcccc
Confidence 44444443
No 332
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=67.65 E-value=1.5e+02 Score=38.74 Aligned_cols=200 Identities=17% Similarity=0.131 Sum_probs=115.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCCchh-hHHH----HHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc-CCChhhhh-hHH
Q 000194 18 AGGGSLDALNRILADLCTHGNPKE-GASL----ALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE-SNDAAENL-GAL 90 (1880)
Q Consensus 18 ~~~~~~~~~~~l~~~l~s~~~~~~-~aa~----~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~-s~~~~~r~-~~i 90 (1880)
..++...+.+-+|++++......+ .... ...+.....+..+|.-.|...-+.+..-+.++.+ +++...+. .-+
T Consensus 29 ~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~~~~~~~~~~~~~~~li 108 (552)
T PF14222_consen 29 TEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELEKLRKDSNDAESKIELLI 108 (552)
T ss_pred CHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhcccCCchHHHHHHHH
Confidence 456677788888999987643110 0111 2333444445556665554333222222223332 23332222 233
Q ss_pred HHHhHh-hccccCcchhHHHHHHHHHHhhcccC-CChHHHHHHHHHHHHHhhh---------CCCCchhHHHHHHHHHHh
Q 000194 91 RAIDEL-IDVALGENASKVSKFSNYMRTVFEVK-RDREILVLASKVLGHLARA---------GGAMTADEVEFQVKMALD 159 (1880)
Q Consensus 91 ~ai~~L-i~~~~~~~~~~~~~~~~~L~~~l~~~-~d~~v~~~aa~~l~~L~~~---------~g~~~~~~v~~~~~~~~~ 159 (1880)
.|+..| +.....+..+....|..-+-..|... .+.++..+-|+++..|..+ ....|.++|+..-+++.+
T Consensus 109 ~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~ 188 (552)
T PF14222_consen 109 MGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAK 188 (552)
T ss_pred hhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH
Confidence 344444 44433333333444555555555434 4667888889999888653 112467788889999999
Q ss_pred hhcCCCcchhHHHHHHHH-HHHHhhcCccchhchH-HHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 160 WLRGDRVEYRRFAAVLIL-KEMAENASTVFNVHVA-EFVDAIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 160 ~l~~~~~~~~R~aA~~~l-~~la~~~p~~l~~~l~-~i~~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
|....+.|. +|.-+. ..|+-+.++.|..+-. ++++.+..-++|+ ..|..+..++..++
T Consensus 189 ~~~K~khw~---~afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 189 MMSKPKHWN---VAFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLL 248 (552)
T ss_pred HHhCcchhh---hHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHH
Confidence 986544432 233333 3355555668888888 6999999999999 67788888887665
No 333
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=67.18 E-value=57 Score=33.92 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
+...+.+...-...++|+..-..+++.++... -...+.++.|-.-+...++.++..|+.++..++++++..+...
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~-----~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSP-----DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTST-----THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44445554444556677777777777775321 1124678888888999999999999999999999987655433
Q ss_pred H--HHHHHHHHHHHhcCCCChH--hHHHHHHHHHHHHHhC
Q 000194 638 L--RRHLIQLLTYLEQSSADNK--CREESAKLLGCLIRNC 673 (1880)
Q Consensus 638 l--~~~l~~~l~~l~~~~~~~~--~r~~a~~~L~~l~~~~ 673 (1880)
+ ++++..+..-+........ +|+.++.++..-...+
T Consensus 81 v~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 3 2333333333343312222 7888888888888776
No 334
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=66.99 E-value=3e+02 Score=34.49 Aligned_cols=87 Identities=22% Similarity=0.267 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHH
Q 000194 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVD 1044 (1880)
Q Consensus 965 ~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~ 1044 (1880)
.+++++..+...-++.+.||+|.+++++.+. + +.....+.++..+ +...-.+.+...+|.++--+..+...+
T Consensus 181 ~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~----~--p~~~~ll~~l~~L--I~Qk~~evL~~ciP~L~g~l~ds~~~~ 252 (851)
T KOG3723|consen 181 MLLRVLSAVYEKQPQPINPHLPELLALLSQL----E--PEQYHLLRLLHVL--IKQKQLEVLQKCIPFLIGHLKDSTHND 252 (851)
T ss_pred HHHHHHHHHHhcCCCccCcccHHHHHHhcCC----C--HHHHHHHHHHHHH--HHhccHHHHHHHHHHHHHHhccccchh
Confidence 5788888888888899999999999987622 1 1112233444433 233345667778888887776666677
Q ss_pred HHHHHHHHHHhhccc
Q 000194 1045 IRRAAIETLTRLIPR 1059 (1880)
Q Consensus 1045 vr~~ai~~l~~l~~~ 1059 (1880)
++...+.-|+...+.
T Consensus 253 i~~~Ilk~ia~~~pv 267 (851)
T KOG3723|consen 253 IILNILKEIAVYEPV 267 (851)
T ss_pred HHHHHHHHHHhcCcc
Confidence 777777766666553
No 335
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=66.87 E-value=1.9e+02 Score=32.46 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=74.2
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHH-HHHHHHHHhhhCCCCchhH
Q 000194 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVL-ASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~-aa~~l~~L~~~~g~~~~~~ 149 (1880)
...+.+|.+++--..|..|+..+....... ....+..+.. .++..+.=++.+. +..++|.+... .+
T Consensus 48 ~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~---~~~~~~~~~~----~l~~~~~Wd~vD~~~~~i~g~~~~~----~~-- 114 (208)
T cd07064 48 WELVLELWQQPEREYQYVAIDLLRKYKKFL---TPEDLPLLEE----LITTKSWWDTVDSLAKVVGGILLAD----YP-- 114 (208)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH----HHcCCchHHHHHHHHHHHhHHHHhC----Ch--
Confidence 333446776654444554444333322111 1222222333 3333333455554 34455655442 11
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
...+.+.+|..++.-|.+|.|.+..+...-. .....++..+-..+.|++.-|+.|...+|++...
T Consensus 115 --~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~-------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k 179 (208)
T cd07064 115 --EFEPVMDEWSTDENFWLRRTAILHQLKYKEK-------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSK 179 (208)
T ss_pred --hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 1246788999988999988887655443222 2234566667788899999999999999987653
No 336
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=66.68 E-value=1.7e+02 Score=32.57 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHH
Q 000194 1691 DESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDIL 1770 (1880)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~ 1770 (1880)
.+..++.+..|+.+++.+|++..+|...|..+... .-...|+..|-+++.+. ++ ..+...
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~--------------g~~~~A~~a~~~Al~l~-----P~-~~~~~~ 111 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR--------------NDYDNALLAYRQALQLR-----GE-NAELYA 111 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHhC-----CC-CHHHHH
Confidence 45678899999999999999999999999775531 23448999999999985 22 333444
Q ss_pred HHHH-HHHhcCC--cHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhH-HHHHHHh
Q 000194 1771 RLLT-LWFNHGA--TEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALM-YPLLVAC 1846 (1880)
Q Consensus 1771 RlLt-Lwf~~g~--~~~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~l-y~L~~~~ 1846 (1880)
-+-+ +++..|. ..+..+.+.+.+..-|. +..+...+-....+. .++.+|.- |.-....
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-----------------~~~al~~LA~~~~~~-g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDAN-----------------EVTALMLLASDAFMQ-ADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-----------------ChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence 4444 4577666 35666666666544332 223333333333333 35566664 4433444
Q ss_pred cCCcHHHHHHH
Q 000194 1847 KSISNLRRAAA 1857 (1880)
Q Consensus 1847 kS~~~~R~~~a 1857 (1880)
...+.+|.+.-
T Consensus 174 ~~~~~~r~~~i 184 (198)
T PRK10370 174 NSPRVNRTQLV 184 (198)
T ss_pred CCCCccHHHHH
Confidence 55556666544
No 337
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=66.64 E-value=3.5e+02 Score=34.24 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc-hhchHHHHHHHHHHh
Q 000194 126 EILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF-NVHVAEFVDAIWVAL 203 (1880)
Q Consensus 126 ~v~~~aa~~l~~L~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l-~~~l~~i~~~i~~~l 203 (1880)
..+-.||++||.++.. +.....++++. .++.+| .......|+.|.+++.+.+..++..- .+..+.+.+.+...|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~---~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQP---LLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHH---HHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 5577899999999886 32223333333 233344 34555789999999999998865421 121455666677777
Q ss_pred cCCc
Q 000194 204 RDPT 207 (1880)
Q Consensus 204 ~D~~ 207 (1880)
.++.
T Consensus 178 ~~~~ 181 (441)
T PF12054_consen 178 ENPE 181 (441)
T ss_pred cCCC
Confidence 7553
No 338
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.34 E-value=23 Score=38.26 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc---CCchhhhHHhHHHHHH
Q 000194 659 REESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG---GFGMRQYISELMPLIV 735 (1880)
Q Consensus 659 r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~---g~~~~~~~~~l~p~l~ 735 (1880)
|-.|-..+.++..+.++.+.|-++.++..+-..+... +.++....+.+|..|.... |..+.||+.|++|.+-
T Consensus 131 rf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr-----d~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n 205 (262)
T KOG3961|consen 131 RFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR-----DDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLN 205 (262)
T ss_pred chhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc-----cHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhh
Confidence 3345567788888888999999999999998888865 6788888888888877644 5799999999999864
Q ss_pred H
Q 000194 736 E 736 (1880)
Q Consensus 736 ~ 736 (1880)
-
T Consensus 206 ~ 206 (262)
T KOG3961|consen 206 T 206 (262)
T ss_pred h
Confidence 3
No 339
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.28 E-value=9.5 Score=41.05 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=55.5
Q ss_pred CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHH---HHHHHHHhCCCchHHHHHHHHHH
Q 000194 337 ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALAC---VGNIARAMGPVMEPHVRGLLDIM 408 (1880)
Q Consensus 337 ~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~---l~~la~~~g~~~~~~l~~ll~~l 408 (1880)
-|-.|-+.+.++..+.|+.+.|.+|+++.-|+.+|...+.++...++.. +..++..+|+.+.||-.++||.+
T Consensus 130 yrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 130 YRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVL 204 (262)
T ss_pred cchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhh
Confidence 4677888888898999998999999999999999976554443334444 44455567789999999999864
No 340
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=66.15 E-value=3.9e+02 Score=34.57 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=99.9
Q ss_pred HHhhcccCCChHHHHHHHHHHHHHhhh-----CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cC-c-
Q 000194 115 MRTVFEVKRDREILVLASKVLGHLARA-----GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-AS-T- 186 (1880)
Q Consensus 115 L~~~l~~~~d~~v~~~aa~~l~~L~~~-----~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~-~p-~- 186 (1880)
+..+++...|.+++.+|+.++-.++.. .|-...+..+..++-. .+......-+++=++.-+.-. .+ +
T Consensus 381 ~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-----~dp~~~i~~~~lgai~NlVmefs~~ks 455 (678)
T KOG1293|consen 381 HLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-----MDPEIMIMGITLGAICNLVMEFSNLKS 455 (678)
T ss_pred HHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-----hCcchhHHHHHHHHHHHHHhhcccHHH
Confidence 444555567899999999988776553 2444555655555543 223323334444344443322 22 1
Q ss_pred cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 000194 187 VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGE 266 (1880)
Q Consensus 187 ~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ 266 (1880)
.|.. ...++.+...+.|+++.+|..+.++|+..+=. .+...+.+.+.++....+..+-++.+|.+.++++.+|+-
T Consensus 456 kfl~--~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~---~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 456 KFLR--NNGIDILESMLTDPDFNSRANSLWVLRHLMFN---CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred HHHH--cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc---chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1221 24667788888999999999999999886521 112244556667666665555444469999999999988
Q ss_pred HHHcch---hhhHHHHHHHHHHHH
Q 000194 267 LLRNTG---EFMMSRYREVAEIVL 287 (1880)
Q Consensus 267 ll~~~~---~~~~~~~~~i~~~ll 287 (1880)
+.-.+- +|+.+.++.+...+.
T Consensus 531 l~c~~~~svdfll~~~~~~ld~i~ 554 (678)
T KOG1293|consen 531 LTCNSRKSVDFLLEKFKDVLDKID 554 (678)
T ss_pred hhcCcHHHHHHHHHhhhHHHHHHH
Confidence 876432 566666666554444
No 341
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=65.99 E-value=54 Score=43.90 Aligned_cols=157 Identities=14% Similarity=0.132 Sum_probs=97.7
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHH-HHHHHHHHhcCCC-ChHhHHHHHHHHHHHHHhCcccc
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH-LIQLLTYLEQSSA-DNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~-l~~~l~~l~~~~~-~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
+.+.++.+|+..-.+.|..-+-++.++....|..=..-+..- -.-++..+..+.. +++.|..|+-+|..++++.+..-
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 567777888888889999888899888776654211100000 0001111222112 34788899999999998754221
Q ss_pred cCc-hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC-CchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHH
Q 000194 678 RPY-IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLG 755 (1880)
Q Consensus 678 ~py-~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg 755 (1880)
+.- -..++.+|+..+.++ ..+-+++=++.|||.|=+... ..+.---+..-..++..|.|+ ..++|.+|+.+||
T Consensus 593 ~acl~~~li~iCle~lnd~----~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDD----PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALG 667 (1387)
T ss_pred HHhccccHHHHHHHHhcCC----ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHH
Confidence 111 135677889988874 257788888999998765321 111111122344566667775 6899999999999
Q ss_pred HHHhhc
Q 000194 756 QVVQST 761 (1880)
Q Consensus 756 ~l~~~~ 761 (1880)
.++.+.
T Consensus 668 tfl~~~ 673 (1387)
T KOG1517|consen 668 TFLSNG 673 (1387)
T ss_pred HHhccc
Confidence 999864
No 342
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=65.27 E-value=3.2e+02 Score=33.31 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=92.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch----hhhh-----hc
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE----LDVQ-----LK 1360 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~~~~-----~~ 1360 (1880)
.++..-..+|.|..|+.+.+..+... ++.....-.|..+|...|+.|.+.-.+...... .... ..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 44566778888899998888776532 223456678899999999999988877643221 1111 13
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCchhHHh-Hh-hHhHHHHHh------hCHHHHHHHHhhhcCCCChHHHHhHHHH
Q 000194 1361 ESWYEKLQRWDDALKAYTNKASQASNPHIVLEA-TL-GRMRCLAAL------ARWEELNNLCKEYWTPAEPAARLEMAPM 1432 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~-~~-g~m~cl~~L------g~w~~l~~~~~~~~~~~~~~~~~~~~~~ 1432 (1880)
...+...|++++|+..|++.....+......+. .. ..+..+..- .+|+.+.......... .........
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~ 269 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD---HGLAFNDLH 269 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc---ccchHHHHH
Confidence 446889999999999999875432211111111 11 333333333 4687776554322111 111111124
Q ss_pred HHHHHHHcCChhhHHHHHhhc
Q 000194 1433 AANAAWNMGEWDQMAEYVSRL 1453 (1880)
Q Consensus 1433 ~a~aaw~l~~Wd~~~~~~~~~ 1453 (1880)
.+.++-..|+++.....+..+
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 270 AALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHH
Confidence 667777888998887777654
No 343
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=64.39 E-value=1e+02 Score=31.93 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=69.0
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHH
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLT 647 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~ 647 (1880)
..++|+..-..+++.++.... . ..+.++.|..-++..++.|...|+.+|..++++++..|-..+ +.++.+++.
T Consensus 14 l~~~dw~~ileicD~In~~~~-~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 14 NREEDWEAIQAFCEQINKEPE-G----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred CCCCCHHHHHHHHHHHHcCCc-c----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 346777777778887753211 1 235688888889999999999999999999999986554333 344445555
Q ss_pred HHhc----CCCChHhHHHHHHHHHHHHHhCc
Q 000194 648 YLEQ----SSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 648 ~l~~----~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
-+.. +..+..++...+.++..-+...+
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4432 11456778888888877777665
No 344
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=64.29 E-value=3.2e+02 Score=32.93 Aligned_cols=211 Identities=14% Similarity=0.093 Sum_probs=108.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHc---CCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhh
Q 000194 12 GPPAPGAGGGSLDALNRILADLC---THGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENL 87 (1880)
Q Consensus 12 ~~~~~~~~~~~~~~~~~l~~~l~---s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~ 87 (1880)
++-..+..+--.++....+..+- .++. +++.+ |+.+-.....++-++++..-...+...+..+++.+..++..
T Consensus 45 ~~~il~~s~~~~dl~~~~~d~lde~~dk~AktR~~~---le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~ 121 (427)
T KOG2842|consen 45 GSGILDESGTQEDLEEKLKDDLDEVKDKSAKTRQEA---LEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQL 121 (427)
T ss_pred chhhhcccccHHHHHHHHHHHHHHHHhcchhHHHHH---HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHH
Confidence 44444556666777888877773 3332 34334 33333223334555555444445667777888888888877
Q ss_pred hHHHHHhHhhcccc-Cc-chhHHHHHHHHHHhhccc-CCChHHHHHHHHHHH--HHhhhCCCCchhHHHHHHHHHHhhh-
Q 000194 88 GALRAIDELIDVAL-GE-NASKVSKFSNYMRTVFEV-KRDREILVLASKVLG--HLARAGGAMTADEVEFQVKMALDWL- 161 (1880)
Q Consensus 88 ~~i~ai~~Li~~~~-~~-~~~~~~~~~~~L~~~l~~-~~d~~v~~~aa~~l~--~L~~~~g~~~~~~v~~~~~~~~~~l- 161 (1880)
++-..+.++.--.+ +. ......-..+++..++.. +.-+..+..++-++| -+... .-..++..+++-.-+.|.
T Consensus 122 ~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~--~d~~e~~~~l~~~~~~~~~ 199 (427)
T KOG2842|consen 122 LAAALIGLLCVQAGPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAE--ADIIELGSFLICLEESFGA 199 (427)
T ss_pred HHHHHHHHHHHhccCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHH
Confidence 76655655532211 11 111122222333333321 112333333333443 22211 112222222222222222
Q ss_pred ----cCC-------CcchhHHHHHHHHHHHHhhcCccchhchHH-HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 162 ----RGD-------RVEYRRFAAVLILKEMAENASTVFNVHVAE-FVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 162 ----~~~-------~~~~~R~aA~~~l~~la~~~p~~l~~~l~~-i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
.++ ........++.++..+..-||.....++.. .+|.|-..|.-....+|.+|.+++..+.++.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~ 277 (427)
T KOG2842|consen 200 VYLEDDETVVVCACQNLGLLLTCLTAWSLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQD 277 (427)
T ss_pred hhcccCCCccccccchhHHHHHHHHHHHHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhc
Confidence 111 233455566667777666777655555544 557777888878888899999988877776553
No 345
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=63.84 E-value=1.3e+02 Score=31.44 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=58.6
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCCh
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEW 1443 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~W 1443 (1880)
+-..|++++|...|+..+...+++........++-+|+...|+|+.-....+.. .+..++.....+...++.+.|+|
T Consensus 58 ~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI---PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---cCcchHHHHHHHHHHHHHHCCCH
Confidence 445699999999999988754333211234567889999999999888777553 12344555666778889999999
Q ss_pred hhHHH
Q 000194 1444 DQMAE 1448 (1880)
Q Consensus 1444 d~~~~ 1448 (1880)
+.-..
T Consensus 135 ~~A~~ 139 (145)
T PF09976_consen 135 DEARA 139 (145)
T ss_pred HHHHH
Confidence 87654
No 346
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=63.83 E-value=1.9e+02 Score=34.31 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=70.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
+..++..-...++-+-||+++|.+.+.++.+.+.+ ..-..++.+=+.-..|.. +..+|+...+++....
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD----------~~l~qLa~awv~l~~g~e-~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED----------SILTQLAEAWVNLATGGE-KYQDAFYIFEELSDKF 197 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC----------HHHHHHHHHHHHHHHTTT-CCCHHHHHHHHHHCCS
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----------HHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcc
Confidence 34566666677888999999999999988765431 234455555555556642 3568999998875432
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1880)
... ..-..-+|-|++.+|+|- +..+.+..|.+.+|+...+....
T Consensus 198 ~~t---------------~~~lng~A~~~l~~~~~~-------------eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 198 GST---------------PKLLNGLAVCHLQLGHYE-------------EAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp --S---------------HHHHHHHHHHHHHCT-HH-------------HHHHHHHHHCCC-CCHHHHHHHH
T ss_pred CCC---------------HHHHHHHHHHHHHhCCHH-------------HHHHHHHHHHHhccCCHHHHHHH
Confidence 210 001123678888888884 45566777888888877755544
No 347
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=63.78 E-value=30 Score=30.10 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=49.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1574 KFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1574 k~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
..+....+.|+++.|...+.++....| ..+.+.+..+.+++.+|+ ..+|+..++..+..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P----------~~~~a~~~lg~~~~~~g~---~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDP----------DNPEAWYLLGRILYQQGR---YDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCST----------THHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 467788899999999999999988765 257899999999999995 68899998887653
No 348
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=63.28 E-value=59 Score=41.93 Aligned_cols=107 Identities=15% Similarity=0.222 Sum_probs=76.9
Q ss_pred cchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc
Q 000194 984 HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ 1061 (1880)
Q Consensus 984 yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~ 1061 (1880)
|-..++|.+++.++.. |+.+...+|+-+..+...+. .+-..|+|.+...|.. .+..+|..+++++..|+..++
T Consensus 327 yq~~i~p~l~kLF~~~----Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSP----DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred cccchhhhHHHHhcCc----chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhhhc
Confidence 8888999999999653 56677778888888877775 3345688988877754 368899999999999998866
Q ss_pred ccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000194 1062 VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095 (1880)
Q Consensus 1062 ~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l 1095 (1880)
-...-..++..+.+.-.+.+..+|-....||+-+
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeeccc
Confidence 4445556666666666544556776665555433
No 349
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=62.68 E-value=1.4e+02 Score=31.58 Aligned_cols=99 Identities=18% Similarity=0.064 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000194 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1880)
Q Consensus 1613 ~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~ 1692 (1880)
-...|+++-.+...|+ -.+|.+..+-++.- .. . ....---++-|+..+|+|
T Consensus 35 l~~lY~~A~~ly~~G~---l~~A~~~f~~L~~~-Dp--~------------~~~y~~gLG~~~Q~~g~~----------- 85 (157)
T PRK15363 35 LNTLYRYAMQLMEVKE---FAGAARLFQLLTIY-DA--W------------SFDYWFRLGECCQAQKHW----------- 85 (157)
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh-Cc--c------------cHHHHHHHHHHHHHHhhH-----------
Confidence 4678999999999995 67888877765431 10 0 001112256666666666
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.+.+..|..|..++|+++.++++.|..+..+= -...|.++|-.+|..+
T Consensus 86 --~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG--------------~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 86 --GEAIYAYGRAAQIKIDAPQAPWAAAECYLACD--------------NVCYAIKALKAVVRIC 133 (157)
T ss_pred --HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHHh
Confidence 56789999999999999999999998866531 2347888888888875
No 350
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.20 E-value=3.2e+02 Score=36.40 Aligned_cols=214 Identities=14% Similarity=0.135 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc-cc
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VL 635 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~ 635 (1880)
++..+-+|.. ++.+.+..+|.++++....+ ...++.+...++++.++...+..|+.-|..++.++|.+...-|.. ..
T Consensus 61 iNs~llrLaD-aF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~ 139 (970)
T KOG1988|consen 61 INSQLLRLAD-AFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEFNQV 139 (970)
T ss_pred hhHHHHHHHH-HhccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccccch
Confidence 3333334433 46677888999999988632 244555556778888888877788999999999999998877653 11
Q ss_pred HHHHHHHHHHHHHHhcCCCCh--HhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHH
Q 000194 636 PALRRHLIQLLTYLEQSSADN--KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVG 713 (1880)
Q Consensus 636 p~l~~~l~~~l~~l~~~~~~~--~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~ 713 (1880)
+++ +..-..++.+. +..+.|+.+++...+. |...|...+-..+.... .....+..++-.+.
T Consensus 140 hhl-------Ir~sl~S~helE~eaa~~Aaa~Faa~sk~-------FA~si~gkis~mIef~d---~~~~mkL~li~Vfs 202 (970)
T KOG1988|consen 140 HHL-------IRISLDSHHELEVEAAEFAAACFAAQSKD-------FACSICGKISDMIEFLD---LPVPMKLSLIPVFS 202 (970)
T ss_pred hHH-------HHHHhcCccchhhHHHHHHHhhhhhhhhh-------hHHHHHHHHHHHhhccc---CCCCcchhHhHHHH
Confidence 222 22212221122 2222333333333222 22233322222222221 12223333344444
Q ss_pred HHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHH-HHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHH
Q 000194 714 DLARVGGFGMRQYISELMPLIVEALLDGAAVTKREV-AVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR 792 (1880)
Q Consensus 714 ~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~-Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~ 792 (1880)
.|+.. ...+ +.......+.+.+. ....+-. -+.++..++..+-+ ..|+..+.|++.++.+....+|.
T Consensus 203 ~M~c~--at~A---~ra~~l~m~lv~~t-ps~d~~v~fL~stT~Lasrs~~------ai~eq~d~l~q~~ked~~kivr~ 270 (970)
T KOG1988|consen 203 HMHCH--ATGA---SRAFGLCMSLVSGT-PSIDRVVAFLYSTTNLASRSLV------AISEQSDVLLQFLKEDERKIVRL 270 (970)
T ss_pred Hhcch--hhhh---HHHHHHHHHHhcCC-CcccceeeehhhhHHHHHHHHH------HhHHHHHHHHHhhcCCchhHHHH
Confidence 44321 1112 22333334444433 2334433 36777777665533 24788999999998787888898
Q ss_pred HHHHHHHHH
Q 000194 793 EVLKVLGIM 801 (1880)
Q Consensus 793 ~~l~~lg~l 801 (1880)
.+++.+..+
T Consensus 271 ~vl~kl~~L 279 (970)
T KOG1988|consen 271 KVLRKLDFL 279 (970)
T ss_pred HHHHHHHHH
Confidence 888887654
No 351
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.55 E-value=15 Score=36.49 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 728 ~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
-+++..+++.|..+.+...-..|+.-+|.+++..+.....-.+ -..-..+++++.. .+++||.+|+.++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h-~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNH-EDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS--SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 3566677777754445556677888999999886442111001 1233455666665 4899999999998765
No 352
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=61.35 E-value=2.8e+02 Score=33.75 Aligned_cols=150 Identities=14% Similarity=0.091 Sum_probs=79.4
Q ss_pred HHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc--CCc
Q 000194 646 LTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG--GFG 722 (1880)
Q Consensus 646 l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~--g~~ 722 (1880)
+...-.| ++....-.+.-++|.++++-.-- ..++ ..+++.|+..+-.....+.+..+..+.+.++..++--. ...
T Consensus 320 ~~sw~~S-~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~ 397 (604)
T KOG4500|consen 320 LESWFRS-DDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAH 397 (604)
T ss_pred HHHHhcC-CchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhh
Confidence 3333345 55666667778899999763211 1112 24555555555443223346666677777777654211 112
Q ss_pred hhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000194 723 MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1880)
Q Consensus 723 ~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~ 800 (1880)
+.| ..+...++..+.-. ++.+.-.-+.++..+..+..+..--..+.|++++.|...-+++....|.-+..|++..
T Consensus 398 ~~~--aGvteaIL~~lk~~-~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~ 472 (604)
T KOG4500|consen 398 FAP--AGVTEAILLQLKLA-SPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG 472 (604)
T ss_pred ccc--cchHHHHHHHHHhc-CCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence 222 12333444444422 2334333444554444443322122245689999999988877666777777777644
No 353
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=61.15 E-value=3.6e+02 Score=32.43 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=58.5
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-------HHHHHHhhhcCCCcchhHHHHHHHHHHHHh
Q 000194 110 KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-------QVKMALDWLRGDRVEYRRFAAVLILKEMAE 182 (1880)
Q Consensus 110 ~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-------~~~~~~~~l~~~~~~~~R~aA~~~l~~la~ 182 (1880)
-|.+.|..+ ..+.++++.....++.|.........-+... .....+..+ +..++-....|+.++..++.
T Consensus 59 ~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 59 LFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ---HHHHHH------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 344555554 2467888888888888776543222222221 233344423 44577788889999999988
Q ss_pred hcCccchhchHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHH
Q 000194 183 NASTVFNVHVAEFVDAIWVAL----RDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 183 ~~p~~l~~~l~~i~~~i~~~l----~D~~~~VR~aA~~al~~~~~ 223 (1880)
..+........++++.++..+ +.++..++..|..++..+++
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 888766553344455544444 44556677777887777654
No 354
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=59.69 E-value=28 Score=43.92 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=54.3
Q ss_pred HHHHHHHhhcCChHHHhHHHHHHhchhh-------hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000194 1329 EALIHINNQLHQHEAAVGILTYAQKELD-------VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1880)
Q Consensus 1329 e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-------~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1880)
+.-+++|.+||+.-..+-+++.-...-+ ....+..+-.+..|++|.++|..-- .+.+.|.||
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~-----------~~e~~~ecl 832 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG-----------DTENQIECL 832 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------chHhHHHHH
Confidence 3457788888888888888774221111 1111223445667999999997531 246799999
Q ss_pred HHhhCHHHHHHHHhhh
Q 000194 1402 AALARWEELNNLCKEY 1417 (1880)
Q Consensus 1402 ~~Lg~w~~l~~~~~~~ 1417 (1880)
..|.+++.|..++...
T Consensus 833 y~le~f~~LE~la~~L 848 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTL 848 (1189)
T ss_pred HHHHhhhhHHHHHHhc
Confidence 9999999999998875
No 355
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=59.59 E-value=36 Score=33.15 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=56.0
Q ss_pred hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC
Q 000194 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP 335 (1880)
Q Consensus 273 ~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~ 335 (1880)
+.+.|+++.++..+...+.|-.+.||.-++..+.-+-++.|+..+..++.++++..+..+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 457788999999999999999999999999999999999999867778899999999998654
No 356
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=59.54 E-value=15 Score=28.76 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 194 EFVDAIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 194 ~i~~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
..+|.+...|.++++.||+.|+.||+.+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46788899999999999999999998764
No 357
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=58.39 E-value=4.1e+02 Score=32.27 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhh-----ccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000194 1533 IIRNMWTERIQG-----TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1880)
Q Consensus 1533 ~l~~~W~~Rl~~-----~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1880)
.+.+.|+.||.. ...|.+..++.+.-+---. .++...|.-+-.+|+|++.|..|..+|.....+.++
T Consensus 289 ~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 289 ALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 345556665531 1234444544444333222 244578889999999999999999999988877554
No 358
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=58.30 E-value=2.4e+02 Score=33.29 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHh-cCHHHHHHHHHHHHhc---cCCCchhHHhHhhHhHHH
Q 000194 1326 AVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKL-QRWDDALKAYTNKASQ---ASNPHIVLEATLGRMRCL 1401 (1880)
Q Consensus 1326 ~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~l-g~W~~Al~~y~~~~~~---~~~~~~~~~~~~g~m~cl 1401 (1880)
++++.-+++|...|+++.+..++... +..||+. |++++|+++|++...- ...+....+.....-.++
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~l---------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKEL---------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH---------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH---------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 45667788999999999887766532 2347777 8999999999987752 112211133445566667
Q ss_pred HHhhCHHHHHHHHhhhcCC----C--ChHHHHhHHHHHHHHHHHcCChhhHHHHHhh
Q 000194 1402 AALARWEELNNLCKEYWTP----A--EPAARLEMAPMAANAAWNMGEWDQMAEYVSR 1452 (1880)
Q Consensus 1402 ~~Lg~w~~l~~~~~~~~~~----~--~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~ 1452 (1880)
..+|+|+.-.+..+..... . ....+. ..--+.-+....||.-..++.++.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~-~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE-YFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH-HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHH-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888987766655432211 0 111221 111223355556777665555543
No 359
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=58.04 E-value=89 Score=45.35 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=91.9
Q ss_pred CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000194 185 STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAV 264 (1880)
Q Consensus 185 p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l 264 (1880)
+..+..|++.++...=..|+.+++.||+-+......++... +...+.+.+..++.-+.+| .+.+ .-+|+.+|
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f---ds~~qqeVv~~Lvthi~sg----~~~e-v~~aL~vL 497 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF---DSYCQQEVVGALVTHIGSG----NSQE-VDAALDVL 497 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH------HHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHcCC----cHHH-HHHHHHHH
Confidence 44567899999998888999999999999999888877643 2223334444444444433 2233 56888899
Q ss_pred HHHHHcchhhhHHHHHHHHHHHHHHhhc-chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHH
Q 000194 265 GELLRNTGEFMMSRYREVAEIVLRYLEH-RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFI 343 (1880)
Q Consensus 265 ~~ll~~~~~~~~~~~~~i~~~ll~~~~~-~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~ 343 (1880)
..|....++.+.++ ...+..++.++++ ..+.||+. ..++..+|...... ....-+++.-.+-.+|.+...+..-..
T Consensus 498 ~~L~~~~~~~l~~f-a~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~-~s~i~del~ivIRKQLss~~~~~K~~G 574 (1426)
T PF14631_consen 498 CELAEKNPSELQPF-ATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSS-SSSIQDELHIVIRKQLSSSNPKYKRIG 574 (1426)
T ss_dssp HHHHHH-HHHHHHT-HHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHH
T ss_pred HHHHhccHHHHHHH-HHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCccc-chhhHHHHHHHHHHhhcCCcHHHHHHh
Confidence 99988666666554 3344555565554 34557765 66777777543321 122235555566677777666544444
Q ss_pred HHHH
Q 000194 344 ALGE 347 (1880)
Q Consensus 344 alg~ 347 (1880)
.||.
T Consensus 575 IIGa 578 (1426)
T PF14631_consen 575 IIGA 578 (1426)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 360
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=57.74 E-value=26 Score=34.06 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=52.1
Q ss_pred cccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc-ccCchHHHHHHHHHHhccC
Q 000194 631 PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAPIHKALVARLLEG 695 (1880)
Q Consensus 631 p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~il~~ll~~l~~~ 695 (1880)
|..+.|+++.++......+.+. .+++|..|+..|..+.+.+|+. +..+...+++.++..+...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi--~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHI--SPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhC--CHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3456688887777777778876 6889999999999999999988 7888888998888888754
No 361
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=57.40 E-value=74 Score=33.53 Aligned_cols=82 Identities=11% Similarity=-0.019 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHH
Q 000194 1692 ESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILR 1771 (1880)
Q Consensus 1692 ~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~R 1771 (1880)
...++..+.|+..+.++|.+...|+.+|..+-.. .-...||.+|-+++.++. +...-...
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~--------------g~~~~AI~aY~~A~~L~~------ddp~~~~~ 108 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ--------------KHWGEAIYAYGRAAQIKI------DAPQAPWA 108 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHhcCC------CCchHHHH
Confidence 5689999999999999999999999999875532 234589999999999863 22333444
Q ss_pred HHHHHHhcCCcHHHHHHHHhcc
Q 000194 1772 LLTLWFNHGATEEVQIALQKGF 1793 (1880)
Q Consensus 1772 lLtLwf~~g~~~~v~~~~~~~~ 1793 (1880)
+=...|..|+.+.-.+.|+..+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555677777766665555544
No 362
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=57.27 E-value=12 Score=29.62 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=22.0
Q ss_pred ccHhhHHHHHHHhCCCCHhHHHHHHHHH
Q 000194 596 AQADCLSAIFAALNDEDFDVREYAISVA 623 (1880)
Q Consensus 596 ~~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1880)
..+.+...+...+.|+++.||++|++++
T Consensus 15 ~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 15 DSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3456677788888999999999988764
No 363
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=56.77 E-value=23 Score=32.26 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=34.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcc---CCCc-hhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQA---SNPH-IVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~---~~~~-~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
..|..+|+|++|+.+|++.++-. .+.+ +......++-.|+..+|+++.-..+.+
T Consensus 13 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 13 RVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34788999999999999987531 1111 112334566677778888776665544
No 364
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=56.62 E-value=16 Score=32.14 Aligned_cols=52 Identities=27% Similarity=0.288 Sum_probs=43.8
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1580 RKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
.+.|+++.|...+.++...+|. .+.+.+..++++...|+ ..+|...|+.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~g~---~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD----------NPEARLLLAQCYLKQGQ---YDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT----------SHHHHHHHHHHHHHTT----HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 5789999999999999887663 57899999999999994 7899999887654
No 365
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=56.54 E-value=5e+02 Score=32.62 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=70.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...+.-++.+..+.|+++.|...+.+.++..|+. .........++..-..+ +...+++.++...+.-
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---------~~~~~~~l~~~~~l~~~--~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---------RAISLPLCLPIPRLKPE--DNEKLEKLIEKQAKNV 329 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---------ccchhHHHHHhhhcCCC--ChHHHHHHHHHHHHhC
Confidence 468899999999999999999999999998765531 11100011112211222 2355666666544321
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHH--HHHhhcccchHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYR--NATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~--~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
..++. ..-...+++++++.|+| ++..++|+ .+.+..|+.+- +.++|....+
T Consensus 330 p~~~~-------------~~ll~sLg~l~~~~~~~-------------~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~ 382 (409)
T TIGR00540 330 DDKPK-------------CCINRALGQLLMKHGEF-------------IEAADAFKNVAACKEQLDAND-LAMAADAFDQ 382 (409)
T ss_pred CCChh-------------HHHHHHHHHHHHHcccH-------------HHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH
Confidence 11000 00112357777777776 56678888 47778887766 4477766544
No 366
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=56.43 E-value=3.6e+02 Score=32.90 Aligned_cols=147 Identities=14% Similarity=0.177 Sum_probs=73.3
Q ss_pred HHHhhhcCCChhh--hhhHHHHHhHhhccccCcchhHHHHHH-HHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 73 RISGLLESNDAAE--NLGALRAIDELIDVALGENASKVSKFS-NYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 73 ~i~~l~~s~~~~~--r~~~i~ai~~Li~~~~~~~~~~~~~~~-~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
.+..++.+++... |.-+.-.++.++.- ++..++.+.. .-+.++-....-++..+..+-.++.|-+++......+
T Consensus 184 ~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L 260 (832)
T KOG3678|consen 184 LLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL 260 (832)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3445666776655 66666666665432 1222332222 1122221112234666666666776666543222333
Q ss_pred HHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh-chHH-HHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 150 VEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV-HVAE-FVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 150 v~~-~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~-~l~~-i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
|.. .+..++=|.+.....-.||+|+ +|+.++.+....... .+.. +-+-++......+...|.-|+-|...+..
T Consensus 261 vaa~~lD~vl~~~rRt~P~lLRH~AL-AL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 261 VAAGGLDAVLYWCRRTDPALLRHCAL-ALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HhhcccchheeecccCCHHHHHHHHH-HhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 333 3555666776555667888875 666666553322211 1111 22223343344567778888877765543
No 367
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=55.40 E-value=1.1e+02 Score=37.86 Aligned_cols=79 Identities=14% Similarity=0.349 Sum_probs=57.8
Q ss_pred HHHhhccCCHHHHHHHHHHHHhhcCC-cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHH
Q 000194 1540 ERIQGTKRNVEVWQALLAVRALVLPP-TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA 1618 (1880)
Q Consensus 1540 ~Rl~~~~~~~~~w~~iL~~R~~vl~~-~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~ 1618 (1880)
.|-...-.|.+.-.+|.-+=+..+.. ..|...|+.+++.|+|.+.+..-.+...+++.+.|+ .|.+=+-
T Consensus 75 ~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~----------~~dLWI~ 144 (568)
T KOG2396|consen 75 KRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN----------NPDLWIY 144 (568)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC----------CchhHHh
Confidence 44445556777778887665555543 458999999999999999888888888888887764 2444444
Q ss_pred HHHHHHhcCC
Q 000194 1619 YLKYQWSLGE 1628 (1880)
Q Consensus 1619 ~ak~lw~~g~ 1628 (1880)
-|++.+..+.
T Consensus 145 aA~wefe~n~ 154 (568)
T KOG2396|consen 145 AAKWEFEINL 154 (568)
T ss_pred hhhhHHhhcc
Confidence 5777777774
No 368
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=55.25 E-value=1.9e+02 Score=36.00 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|.--..+..+.|+...|...+.++...+|. .+-+.+-++..+-+.|+ ..+|+..|+..+.+.
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~----------~~~l~~~~a~all~~g~---~~eai~~L~~~~~~~ 404 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPN----------SPLLQLNLAQALLKGGK---PQEAIRILNRYLFND 404 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------ccHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcC
Confidence 55777777888999999999999999999887663 36788889999988884 569999999887654
Q ss_pred c
Q 000194 1647 S 1647 (1880)
Q Consensus 1647 ~ 1647 (1880)
.
T Consensus 405 p 405 (484)
T COG4783 405 P 405 (484)
T ss_pred C
Confidence 3
No 369
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=55.19 E-value=1.1e+02 Score=31.95 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~ 1641 (1880)
...++..++.+-..|.++.|...+..+....++ + . ..+...+-.++++..+|+ -.+|+..|+.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d--~-~----l~~~a~l~LA~~~~~~~~---~d~Al~~L~~ 110 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPD--P-E----LKPLARLRLARILLQQGQ---YDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--H-H----HHHHHHHHHHHHHHHcCC---HHHHHHHHHh
Confidence 567888999999999999999999998764321 0 0 125566777888888984 6889998865
No 370
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=54.90 E-value=48 Score=31.55 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=45.9
Q ss_pred CChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
+....|+.|+.+|+.+++..+....---+.|+..+.+.+.|+. ......-+++.++..|.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~---~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK---KPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHHH
Confidence 4578899999999999998776555555688999999999863 35556667777777664
No 371
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=54.62 E-value=3.8e+02 Score=31.18 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHhhh--------CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC----ccchhchH
Q 000194 126 EILVLASKVLGHLARA--------GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS----TVFNVHVA 193 (1880)
Q Consensus 126 ~v~~~aa~~l~~L~~~--------~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p----~~l~~~l~ 193 (1880)
..++.++..|+.++.. .+....+.+...-...+.+|-+-+..+.=.++...+..+++.+- ..+.....
T Consensus 62 r~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~ 141 (255)
T PF10350_consen 62 RSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPE 141 (255)
T ss_pred HHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 4567788888888742 23456777888888888888655554444555666666666533 23444455
Q ss_pred HHHHHHHHHhcCC-ch---hHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCC-------hhHHHHHHH
Q 000194 194 EFVDAIWVALRDP-TL---AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP-------VHSIHGSLL 262 (1880)
Q Consensus 194 ~i~~~i~~~l~D~-~~---~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~-------~~~~~~al~ 262 (1880)
..+..++..+..+ .. ..|+.|.-.+- +..++.. ++......+...+..++.-...+.. ...+--|+-
T Consensus 142 ~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~-i~aiL~a-e~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlN 219 (255)
T PF10350_consen 142 EWLDELLEAIESKGQQKLSITRRSAGLPFL-ILAILSA-EPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALN 219 (255)
T ss_pred HHHHHHHHHHhcccccccccccccCcHHHH-HHHHHhc-CCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHH
Confidence 5677777777766 22 56877765443 2233332 2211113444444444432222110 123444566
Q ss_pred HHHHHHH--cchhhhHHHHHHHHHHHHHHhh
Q 000194 263 AVGELLR--NTGEFMMSRYREVAEIVLRYLE 291 (1880)
Q Consensus 263 ~l~~ll~--~~~~~~~~~~~~i~~~ll~~~~ 291 (1880)
+|..|.+ .-++.+.+|+.+.+..-+..+.
T Consensus 220 iLr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 220 ILRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 7777776 3356677777776655554443
No 372
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=54.50 E-value=1.5e+02 Score=32.96 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh
Q 000194 875 HQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQH 933 (1880)
Q Consensus 875 ~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~ 933 (1880)
-..+...+..+|..+|..+.|++..++..+-+.-.+.+-..+..+=..+|..+..+|+.
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 45688888899999999888888888777766544444467888888889999888854
No 373
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=54.34 E-value=32 Score=30.73 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=36.2
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1880)
.|-+.++|++|++++++.+...++. ......+=.|+..+|+|+.-....+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 4677888999999998887654432 345566778888888887665554443
No 374
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=54.05 E-value=42 Score=35.80 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=65.3
Q ss_pred CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHH
Q 000194 610 DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALV 689 (1880)
Q Consensus 610 D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll 689 (1880)
|+-.++|.+|++++-.+...++..+- +..++.....++.+ +...+..+..+|..++...|..+.+.++.+.+.+-
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D---~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~ 112 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD---EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLR 112 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC---cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 66789999999999999887765543 33344444455533 46778888899999999888888887777777777
Q ss_pred HHhccCCCCC-------CChhHHHHHHHHHHHHHH
Q 000194 690 ARLLEGTGIN-------ANNGIISGVLVTVGDLAR 717 (1880)
Q Consensus 690 ~~l~~~~~~~-------~~~~v~~~~~~~l~~La~ 717 (1880)
..++..-..+ ...+....++.++..+..
T Consensus 113 ~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~ 147 (169)
T PF08623_consen 113 KTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNS 147 (169)
T ss_dssp HHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 6665321100 122234455666666633
No 375
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=53.94 E-value=63 Score=35.51 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhcc-HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH
Q 000194 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQ-ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1880)
Q Consensus 561 vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~-~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1880)
.++.+++. ..+++..+|..+++-+...-+ .-|.+ .+.++.++.+..|++..+|..|..++..+.+.+|..+...+
T Consensus 9 yl~~Il~~-~~~~~~~vr~~Al~~l~~il~--qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 9 YLKNILEL-CLSSDDSVRLAALQVLELILR--QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HHHHHHHH-HhCCCHHHHHHHHHHHHHHHh--cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444443 357889999999887741101 11222 35789999999999999999999999999999987654333
No 376
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=53.86 E-value=56 Score=32.85 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=46.1
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHH
Q 000194 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHI 328 (1880)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~L 328 (1880)
.+.++.+.+-+ -...+.++++.++..++++++.|+.-++.+|..++...++.|.. ++..-...+
T Consensus 21 ~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~-~~~~~~~~I 84 (122)
T cd03572 21 LYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKR-ELQRNSAQI 84 (122)
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHH-HHHHhHHHH
Confidence 44555542221 12346678999999999999999999999999999999988875 444444333
No 377
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=53.43 E-value=3.8e+02 Score=30.37 Aligned_cols=122 Identities=16% Similarity=0.042 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....++..+....+.|+++.|...+.++....|... ..+...+..+..+...|+ ..+|+..+++++....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~la~~~~~~~~---~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-------YAEQAQLDLAYAYYKSGD---YAEAIAAADRFIRLHP 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-------hHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHCc
Confidence 478899999999999999999999998877655310 113455777788888884 6899999999876432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhc-CC-CCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRAL-PP-GLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~-~~-~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1880)
.. .....++.++|.-.... .. ..+....++..+.|.++++.+|+...+|..+
T Consensus 102 ~~-------------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 102 NH-------------------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred CC-------------------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 11 01112233333322221 00 0112346778999999999999887776544
No 378
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=53.15 E-value=6.4e+02 Score=32.82 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhh---ccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc-
Q 000194 560 ELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFL---AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV- 634 (1880)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~fd~~L---~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v- 634 (1880)
.+.++|++. ..||+..|..+++.++.- .-.|.++- -....+..+...+.|.++.+|..+.+.|..+.-.....+
T Consensus 419 dv~~plvql-l~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 419 DVAQPLVQL-LMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred hhHHHHHHH-hhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 344455554 389999999998888741 01222211 012357788888899999999999999998876654332
Q ss_pred cHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhC
Q 000194 635 LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC 673 (1880)
Q Consensus 635 ~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~ 673 (1880)
...++++-.+.+..+.++ +++.+.|++..++-.+.-.+
T Consensus 498 ~~~~~ki~a~~i~~l~nd-~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLIND-PDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHhhHHHHHHHHhC-CCHHHHHHHHHHHHHhhcCc
Confidence 244566667777778777 89999999999888886443
No 379
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=53.14 E-value=2.1e+02 Score=33.37 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=78.3
Q ss_pred HHHHHHHHH-HHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1569 VETWLKFAS-LCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1569 ~~~~lk~a~-laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
...|...+- +-.+.|++..|...+..+....|... -.|.+.+-.+...+.+|+ ..+|+..++.+++...
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-------~a~~A~y~LG~~y~~~g~---~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-------YQPNANYWLGQLNYNKGK---KDDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-------chHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCC
Confidence 355655555 45778999999999988887655421 136788999999999995 6899999999886543
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1880)
. ......+++++|.-..++ ...+.....|+..++..|+..
T Consensus 212 ~-------------------s~~~~dAl~klg~~~~~~------g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 212 K-------------------SPKAADAMFKVGVIMQDK------GDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred C-------------------CcchhHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCcCCH
Confidence 1 122345566666665544 356889999999999888764
No 380
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=52.95 E-value=5.2e+02 Score=31.75 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=35.8
Q ss_pred chhHHHHHHhhccc-cc--CCCcchh--hHHHHHhhhccCCChHHHHHHHHHHHHhhh
Q 000194 479 SAPVQLALQTLARF-NF--KGHDLLE--FARDSVVLYLDDEDKATRKDAALCCCKLVA 531 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~-~~--~~~~l~~--~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~ 531 (1880)
+..++.||.-+|.| .. .|....+ -.++.+..++.|++++||..|..+.-+++.
T Consensus 381 p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 33557788888887 22 2322211 134567789999999999999888777664
No 381
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=52.88 E-value=1.5e+02 Score=31.75 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+..+...|+++.|...+.++....+.. ...+.+....+.++-..|+ ..+|+..++..+.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-------YDRSYILYNIGLIHTSNGE---HTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-------hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcC
Confidence 7788999999999999999999999887654310 0123455566677777774 67899988876542110
Q ss_pred CCccccccccccccccCcchhhHHHHHH-------HHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYL-------KLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~-------~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1880)
.......++.++. .+|++.... ...++....|+++...+|...
T Consensus 105 ---------------~~~~~~~la~i~~~~~~~~~~~g~~~~A~------~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 105 ---------------LPQALNNMAVICHYRGEQAIEQGDSEIAE------AWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred ---------------cHHHHHHHHHHHHHhhHHHHHcccHHHHH------HHHHHHHHHHHHHHHhCcccH
Confidence 0111234566666 444444332 124556667777777777544
No 382
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=52.59 E-value=51 Score=35.33 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000194 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1880)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlL 1773 (1880)
+++.+..|++|+.++|+...+...|+..+...-....+ ......|...|..+|-++....+ ....+...+++-
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d---~~~A~~~F~kA~~~FqkAv~~~P----~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPD---TAEAEEYFEKATEYFQKAVDEDP----NNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-T----T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHH
Confidence 67888999999999999999999999988765443211 11345788999999999998853 123444444443
No 383
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=52.42 E-value=42 Score=29.92 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=48.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1576 ASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1576 a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
..++.++++++.|..++.++...+|. .+...+.++.++...|+ ..+|+..++..+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~~a~~~~~~g~---~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD----------DPELWLQRARCLFQLGR---YEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc----------cchhhHHHHHHHHHhcc---HHHHHHHHHHHHHH
Confidence 46788999999999999999888663 47788899999999995 68999999987753
No 384
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=51.57 E-value=1.9e+02 Score=30.10 Aligned_cols=100 Identities=11% Similarity=0.149 Sum_probs=65.4
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC-CCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHH-H
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQ-L 645 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~-~ 645 (1880)
..++|+..-..+++.++... + ...+.++.|-.-++ ..++.|...|+.++..++++++..+...+ +.++.+ +
T Consensus 14 l~~~dw~~ileicD~In~~~--~---~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L 88 (141)
T cd03565 14 LQSEDWGLNMEICDIINETE--D---GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVL 88 (141)
T ss_pred CCCcCHHHHHHHHHHHhCCC--C---cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHH
Confidence 45578888888888886321 1 12467888887776 46888999999999999999986654333 334444 3
Q ss_pred HHHHhcC-CCChHhHHHHHHHHHHHHHhCc
Q 000194 646 LTYLEQS-SADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 646 l~~l~~~-~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
+.-+... .....++...+.++.......+
T Consensus 89 ~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 89 VKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 3333321 0234667778888888777654
No 385
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=51.49 E-value=17 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=20.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCC
Q 000194 1361 ESWYEKLQRWDDALKAYTNKASQASN 1386 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~~~~~ 1386 (1880)
+..|.+.|+|++|...|++.+...|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34578899999999999998875543
No 386
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=51.48 E-value=31 Score=25.19 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=24.7
Q ss_pred HHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1672 ARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1672 a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
|+.+..+|...... ...++.+++|++|++++|++
T Consensus 1 a~~~~~lg~~~~~~------~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQL------GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHT------T-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHCcCC
Confidence 35566666666654 35688999999999999863
No 387
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=50.91 E-value=1.2e+02 Score=37.51 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=73.0
Q ss_pred HHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch----h-hhhhcHHHHHHhcC
Q 000194 1295 AEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE----L-DVQLKESWYEKLQR 1369 (1880)
Q Consensus 1295 a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~-~~~~~~~~~e~lg~ 1369 (1880)
-...+.|..|+-++|..... . ++..-.|.++|...++...+.-++..+-.. . -+......+-+.|+
T Consensus 179 l~~t~~~~~ai~lle~L~~~--------~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRER--------D-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HhhcccHHHHHHHHHHHHhc--------C-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 33445677788777765432 1 235556888998888887777666643221 1 12344556788999
Q ss_pred HHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhh
Q 000194 1370 WDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKE 1416 (1880)
Q Consensus 1370 W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1880)
++.|+++.++..+..++ + .+.-..+.+||..+|+|+.-.-..+.
T Consensus 250 ~~lAL~iAk~av~lsP~--~-f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 250 YELALEIAKKAVELSPS--E-FETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHHhCch--h-HHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 99999999998865443 3 23445689999999999876644443
No 388
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=50.59 E-value=97 Score=28.09 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCCh
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEW 1443 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~W 1443 (1880)
+...|+|++|...+++.+...++. ......+-.|+...|+|+.-.+..+...... +.. .......+.+.+..|++
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDN-AKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Ccc-hhHHHHHHHHHHHHHhH
Confidence 445677777777777666543322 2344556666666777765554443321110 000 01222334455556666
Q ss_pred hhHHHHH
Q 000194 1444 DQMAEYV 1450 (1880)
Q Consensus 1444 d~~~~~~ 1450 (1880)
+.-..+.
T Consensus 85 ~~a~~~~ 91 (100)
T cd00189 85 EEALEAY 91 (100)
T ss_pred HHHHHHH
Confidence 5554443
No 389
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=50.31 E-value=22 Score=26.03 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=19.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccC
Q 000194 1361 ESWYEKLQRWDDALKAYTNKASQAS 1385 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~~~~ 1385 (1880)
+..|.+.|+|++|..+|++.++..+
T Consensus 8 g~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 8 GQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3468999999999999999886543
No 390
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=50.13 E-value=21 Score=32.20 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+...|++++|.+...... -++.+...+++.++++..+.+...+|--++.++|.++
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis 57 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS 57 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 345799999998765322 1333334799999999988888999999999999986
No 391
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=50.05 E-value=22 Score=26.25 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=19.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcc
Q 000194 1361 ESWYEKLQRWDDALKAYTNKASQA 1384 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~~~ 1384 (1880)
+..|.++|+|++|+.+|++.++-.
T Consensus 8 g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 8 GNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHhCCchHHHHHHHHHHHHC
Confidence 345889999999999999988653
No 392
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=49.75 E-value=32 Score=25.28 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=22.8
Q ss_pred HHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000194 1672 ARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1880)
Q Consensus 1672 a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1880)
|+++..+|.-...+ ...++.+.+|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~------~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQL------GDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHT------T-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHh------CCchHHHHHHHHHHHHCcC
Confidence 34555555555443 3468899999999999986
No 393
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=49.65 E-value=8.1e+02 Score=34.98 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=108.9
Q ss_pred CCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1564 PPTEDVETWLKFASLCRKSGRISQARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1564 ~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
+|.+ .-.||+|...--.-+..+.|.+.-.+++. ++.....+ .-.+-++|..+.-.-|.. ..-.+..+..
T Consensus 1454 sPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeE------KLNiWiA~lNlEn~yG~e---esl~kVFeRA 1523 (1710)
T KOG1070|consen 1454 SPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEE------KLNIWIAYLNLENAYGTE---ESLKKVFERA 1523 (1710)
T ss_pred CCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHH------HHHHHHHHHhHHHhhCcH---HHHHHHHHHH
Confidence 4544 66899988877777777777776666553 22221111 123445565555555521 1111122222
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
.+.++ --.+|++|....... +..++..+.|+..++-..+..+.|..||.|-
T Consensus 1524 cqycd-----------------------~~~V~~~L~~iy~k~------ek~~~A~ell~~m~KKF~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1524 CQYCD-----------------------AYTVHLKLLGIYEKS------EKNDEADELLRLMLKKFGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHhcc-----------------------hHHHHHHHHHHHHHh------hcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 21111 013456665555443 4556777777777766667889999999885
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC--hhh
Q 000194 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN--INT 1800 (1880)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip--~~~ 1800 (1880)
.+.=+ .+.....+..|+++. + .....+-+-++..|=|.||+.+--...|+.-+..=| .+.
T Consensus 1575 l~~ne-------~~aa~~lL~rAL~~l-------P----k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDl 1636 (1710)
T KOG1070|consen 1575 LRQNE-------AEAARELLKRALKSL-------P----KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDL 1636 (1710)
T ss_pred hcccH-------HHHHHHHHHHHHhhc-------c----hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhH
Confidence 54211 112223444444332 1 234677888899999999998765555666565554 677
Q ss_pred HHHHHHHHHHh
Q 000194 1801 WLVVLPQIIAR 1811 (1880)
Q Consensus 1801 wl~~ipQLiaR 1811 (1880)
|.-.|=|=+-+
T Consensus 1637 W~VYid~eik~ 1647 (1710)
T KOG1070|consen 1637 WSVYIDMEIKH 1647 (1710)
T ss_pred HHHHHHHHHcc
Confidence 88877775543
No 394
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.57 E-value=3.7e+02 Score=30.74 Aligned_cols=132 Identities=16% Similarity=0.086 Sum_probs=73.9
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccc
Q 000194 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLT 1661 (1880)
Q Consensus 1582 ~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~ 1661 (1880)
.|+++-|..+..+++.-+|. +.....-..-.+=++|. ..+||+.|.+.++.+-.+...=..-...+.
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt----------~~v~~KRKlAilka~GK---~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPT----------DTVIRKRKLAILKAQGK---NLEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred hhchhhHHHHHHHHhccCcc----------hhHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 46788888888887765542 11122234445556774 578999988887655432100000000000
Q ss_pred cc------------cCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhh
Q 000194 1662 TA------------TSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729 (1880)
Q Consensus 1662 ~~------------~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~ 1729 (1880)
+. ..-..+..-.++..+|+-+.... | .++..-..++|..|+++++++-.+|+..-..|..+.+..
T Consensus 166 ~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g-g--~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~s 242 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG-G--AENLELARKYYERALKLNPKNLRALFGIYLCGSALAQIS 242 (289)
T ss_pred hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-h--HHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHh
Confidence 00 00001122234444554443332 1 355677789999999999999999998888887776543
No 395
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=49.32 E-value=2.5e+02 Score=29.11 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHhhcch----hHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHH
Q 000194 275 MMSRYREVAEIVLRYLEHRD----RLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIAL 345 (1880)
Q Consensus 275 ~~~~~~~i~~~ll~~~~~~~----~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~al 345 (1880)
+....+.+++.+...++... ..+...++.++.....+.+....-. ..+++.+...|..+.-+..|.+||
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHHHHHHHHHhC
Confidence 34445555555555554422 7788888999998887776543221 358888888888888888888875
No 396
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.26 E-value=5.2e+02 Score=30.65 Aligned_cols=187 Identities=16% Similarity=0.185 Sum_probs=97.8
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhH--HHHHHHHHhcCCchhhHHHH---HHHHHHHH
Q 000194 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISEL--MPLIVEALLDGAAVTKREVA---VSTLGQVV 758 (1880)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l--~p~l~~~l~d~~~~~~r~~A---l~~Lg~l~ 758 (1880)
++..|...+... .+|++...++.+++.|+.. +++-.-+.+. +..++..+.|..+...|..+ ++.|..++
T Consensus 242 ~l~~L~Eal~A~----~dp~~L~~l~~tl~~lAVr--~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA 315 (461)
T KOG4199|consen 242 ILTALTEALQAG----IDPDSLVSLSTTLKALAVR--DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA 315 (461)
T ss_pred hHHHHHHHHHcc----CCccHHHHHHHHHHHHHHH--HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh
Confidence 455666666654 2567777778888887743 2222222222 56777888876666777544 45555544
Q ss_pred hhcCcc--cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCC
Q 000194 759 QSTGYV--ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836 (1880)
Q Consensus 759 ~~~~~~--i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1880)
.+-... |.--.-.|.++..+.+. ..++.|-.+++-++..+.-=.| +... ..+
T Consensus 316 G~DsvKs~IV~~gg~~~ii~l~~~h---~~~p~Vi~~~~a~i~~l~LR~p----------dhsa-------------~~i 369 (461)
T KOG4199|consen 316 GSDSVKSTIVEKGGLDKIITLALRH---SDDPLVIQEVMAIISILCLRSP----------DHSA-------------KAI 369 (461)
T ss_pred CCCchHHHHHHhcChHHHHHHHHHc---CCChHHHHHHHHHHHHHHhcCc----------chHH-------------HHH
Confidence 322111 11111224444444443 3467888888888877642111 1000 000
Q ss_pred cccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchh
Q 000194 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLK 916 (1880)
Q Consensus 837 ~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~ 916 (1880)
+. . -...++.++- .-|.-...+..++..|.+|+..-...+.+.|.-=+..++...+..+++-+
T Consensus 370 e~---------G-----~a~~avqAmk---ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce 432 (461)
T KOG4199|consen 370 EA---------G-----AADLAVQAMK---AHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCE 432 (461)
T ss_pred hc---------c-----hHHHHHHHHH---hCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHH
Confidence 00 0 0123333321 13433345566777788877766666677777777777777666665544
Q ss_pred HHH
Q 000194 917 DYI 919 (1880)
Q Consensus 917 ~~~ 919 (1880)
..+
T Consensus 433 ~~a 435 (461)
T KOG4199|consen 433 AAA 435 (461)
T ss_pred HHH
Confidence 433
No 397
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=48.36 E-value=67 Score=34.62 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=67.0
Q ss_pred HhHHHHHHHHHHHHHhCcccccC------ch----HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhh
Q 000194 657 KCREESAKLLGCLIRNCERLIRP------YI----APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726 (1880)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~~~p------y~----~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~ 726 (1880)
+.|.-+++++-.+.+..+..+.. +. +.+.+.+++.+..+ ++.+...++..+..+....+..++.-
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-----~~~i~~~slri~~~l~~~~~~~Lk~e 111 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-----DFPIFSRSLRIFLTLLSRFRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888877766652 22 23344444444432 46677777888888888777778888
Q ss_pred HHhHHHHHHHHHhc-CC-chhhHHHHHHHHHHHHhh
Q 000194 727 ISELMPLIVEALLD-GA-AVTKREVAVSTLGQVVQS 760 (1880)
Q Consensus 727 ~~~l~p~l~~~l~d-~~-~~~~r~~Al~~Lg~l~~~ 760 (1880)
++.+++.++..+-+ .. +...|..++.++..++..
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 88888888884432 22 346788899999988864
No 398
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=48.16 E-value=5.2e+02 Score=30.41 Aligned_cols=118 Identities=18% Similarity=0.059 Sum_probs=65.6
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000194 1578 LCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1880)
Q Consensus 1578 laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~ 1657 (1880)
+|-++|++++|...+.++.......+|+.. ..-..+.|...|-+..+++ +..+|+..|++-.+-++.....
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~--~~La~~~yn~G~~l~~~~~--~~~~a~~wL~~a~~~l~~~~~~----- 72 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMA--EELARVCYNIGKSLLSKKD--KYEEAVKWLQRAYDILEKPGKM----- 72 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHH--HHHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhhhhc-----
Confidence 577899999999999988654321111100 0113455666666666661 3578988888765544321000
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000194 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1880)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1880)
.....+..+++.++++.+++=..+.+. .+..+.+.+..+.+-+-.++
T Consensus 73 ---~~~~~~~~elr~~iL~~La~~~l~~~~---~~~~~ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 73 ---DKLSPDGSELRLSILRLLANAYLEWDT---YESVEKALNALRLLESEYGN 119 (278)
T ss_pred ---cccCCcHHHHHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHhCCC
Confidence 011234457888888888887765431 23333334444444333443
No 399
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=48.09 E-value=9.4e+02 Score=33.34 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000194 1533 IIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1880)
Q Consensus 1533 ~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1880)
.+...|.+=......+++....|+..=.--.........|.-.-.--|+.+.|+.+...|..++.+++.
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 466789877777777777766665332222223345778888888899999999999999999988765
No 400
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=47.32 E-value=31 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.9
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhh
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLS 627 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~ 627 (1880)
..++.|..++++++.+|++.|..+|+.|+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46888999999999999999999999876
No 401
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=47.32 E-value=3.1e+02 Score=29.51 Aligned_cols=139 Identities=13% Similarity=0.131 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHhhcCC-cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc
Q 000194 1548 NVEVWQALLAVRALVLPP-TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL 1626 (1880)
Q Consensus 1548 ~~~~w~~iL~~R~~vl~~-~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~ 1626 (1880)
+|..|-++. .+-.-+++ ......+...+....+.|+++.|...+.++....+.. ...+.+.+..+..+...
T Consensus 14 ~~~~~~~~~-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~~~~la~~~~~~ 85 (172)
T PRK02603 14 SFTVMADLI-LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP-------NDRSYILYNMGIIYASN 85 (172)
T ss_pred HHHHHHHHH-HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHHHHHc
Confidence 345677766 11111111 1236678889999999999999999999887654321 01235666777777788
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCC-CCCCCHHHHHHHHHHHH
Q 000194 1627 GEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPG-LDDESIPEIIAAYRNAT 1705 (1880)
Q Consensus 1627 g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~-~~~~~~~~i~~~y~~a~ 1705 (1880)
|+ ..+|+..+++.+...... ......++.++..+|+........ ......+...+.|+++.
T Consensus 86 g~---~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 86 GE---HDKALEYYHQALELNPKQ---------------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred CC---HHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 84 678999888766431100 011234677888877765433100 00011344455555556
Q ss_pred hhcccch
Q 000194 1706 QCATKWG 1712 (1880)
Q Consensus 1706 ~~~~~~~ 1712 (1880)
..+|+.+
T Consensus 148 ~~~p~~~ 154 (172)
T PRK02603 148 RLAPNNY 154 (172)
T ss_pred hhCchhH
Confidence 6666554
No 402
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=47.08 E-value=6.1e+02 Score=30.82 Aligned_cols=49 Identities=24% Similarity=0.216 Sum_probs=28.4
Q ss_pred hHHHHHHhhccc-ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhh
Q 000194 481 PVQLALQTLARF-NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLV 530 (1880)
Q Consensus 481 ~~~~Al~~L~~~-~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~ 530 (1880)
++.+|-+.++.| .|-+ .+..-.-+.-+.+.++++-.||+.|..-++.+.
T Consensus 40 ~k~lasq~ip~~fk~fp-~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc 89 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFP-SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFC 89 (460)
T ss_pred HHHHHHHHHHHHHhhCc-hhhhHHHHhhhccccccchhhHHHHHhccchhc
Confidence 567888888876 2211 111111122234556778899999987666554
No 403
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=46.62 E-value=4.2e+02 Score=32.27 Aligned_cols=183 Identities=15% Similarity=0.115 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhh
Q 000194 19 GGGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97 (1880)
Q Consensus 19 ~~~~~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li 97 (1880)
.+..+.+++.+.++++++....|+ -...+...+..............+.+.+.+.+.+...++.....-|++.|.-.++
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 455688899999999988654554 3444555554110112222345566667776777777776665555555555554
Q ss_pred ccccCcchhHHHHHHHHHH---------------hhcccCCChHHHHHHHHHHHHHhhhCC-CCchhHHHHHHHHHHhhh
Q 000194 98 DVALGENASKVSKFSNYMR---------------TVFEVKRDREILVLASKVLGHLARAGG-AMTADEVEFQVKMALDWL 161 (1880)
Q Consensus 98 ~~~~~~~~~~~~~~~~~L~---------------~~l~~~~d~~v~~~aa~~l~~L~~~~g-~~~~~~v~~~~~~~~~~l 161 (1880)
...... ...+.. .+... +++..-.+.+-..-..+++..+..... ....+. .....+++=++
T Consensus 136 ~~~~~~-~~~~~~-~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~l 212 (339)
T PF12074_consen 136 ALSSWK-LDKIDS-KNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYL 212 (339)
T ss_pred Hhcccc-chhhhh-hhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHH
Confidence 311000 000000 00000 111100223333444555555544211 111111 22233444443
Q ss_pred cCCC--cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCc
Q 000194 162 RGDR--VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT 207 (1880)
Q Consensus 162 ~~~~--~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~ 207 (1880)
--.. .+..|..|+..++.+....|.. .-..++..+|.-+.+.+
T Consensus 213 l~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~l~~~~ 257 (339)
T PF12074_consen 213 LCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLWKWLSSSE 257 (339)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHhcc
Confidence 3223 6678888899999988888876 22345666776665443
No 404
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.62 E-value=2.4e+02 Score=35.68 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=84.9
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccc
Q 000194 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLT 1661 (1880)
Q Consensus 1582 ~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~ 1661 (1880)
.+++.+|.+...++..+.|. .|.|..|..-+.+..++ -.+|...++.-+....+..+... ..
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~----------Dplv~~Elgvvay~~~~---y~~A~~~f~~~l~~ik~~~~e~~-~w---- 454 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS----------DPLVLHELGVVAYTYEE---YPEALKYFQKALEVIKSVLNEKI-FW---- 454 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC----------cchhhhhhhheeehHhh---hHHHHHHHHHHHHHhhhcccccc-ch----
Confidence 46788899999998887763 46677777766666663 57899988876533221100000 00
Q ss_pred cccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhH
Q 000194 1662 TATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQF 1741 (1880)
Q Consensus 1662 ~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~ 1741 (1880)
..-...++-.+++++++ ++.+..|+.|+.+.|+...++-..|....- . .-
T Consensus 455 ---~p~~~NLGH~~Rkl~~~-------------~eAI~~~q~aL~l~~k~~~~~asig~iy~l-l-------------gn 504 (611)
T KOG1173|consen 455 ---EPTLNNLGHAYRKLNKY-------------EEAIDYYQKALLLSPKDASTHASIGYIYHL-L-------------GN 504 (611)
T ss_pred ---hHHHHhHHHHHHHHhhH-------------HHHHHHHHHHHHcCCCchhHHHHHHHHHHH-h-------------cC
Confidence 00123456667777664 578899999999999998888888865432 1 23
Q ss_pred HHHHHHHHHHHHhhc
Q 000194 1742 VVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1742 ~~~ai~~y~~si~~~ 1756 (1880)
+-.||.+|=+|+.+.
T Consensus 505 ld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 505 LDKAIDHFHKALALK 519 (611)
T ss_pred hHHHHHHHHHHHhcC
Confidence 448999999999885
No 405
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=46.50 E-value=4.4e+02 Score=34.15 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc
Q 000194 731 MPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 731 ~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga 803 (1880)
+..+-..|+-. ++..|.+.=-++|-++-+ +|.. .+++.|.++.. +.+.++...++-.+|.+||
T Consensus 642 lR~f~h~l~yg-e~~iRravPLal~llsvS-----NPq~---~vlDtLsk~sh-d~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 642 LRHFGHLLHYG-EPHIRRAVPLALGLLSVS-----NPQV---NVLDTLSKFSH-DGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHhhhccC-----CCcc---hHHHHHHHhcc-CcchHHHHHHHHHhccccC
Confidence 44444455544 456777777788876543 4544 57888888765 4478999999999999996
No 406
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=46.33 E-value=6.7e+02 Score=34.37 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1692 ESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1692 ~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
.++++..++|..|.+++|+.--||..+++++.+
T Consensus 51 q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 51 QDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred CCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 347889999999999999999999999888665
No 407
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=46.24 E-value=3.9e+02 Score=31.29 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcc
Q 000194 1551 VWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDL 1630 (1880)
Q Consensus 1551 ~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~ 1630 (1880)
.=.-+...|..+=...+|.+.|.-+..+....|++..|..+..++.++.++ .|.+...++..+..+.++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~----------n~~~~~g~aeaL~~~a~~~ 207 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD----------NPEILLGLAEALYYQAGQQ 207 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhcCCc
Confidence 444455666666555578999999999999999999999999999988653 5888899999998887654
Q ss_pred hHHHHHHHHHHHH
Q 000194 1631 KRKEAFARLQTLA 1643 (1880)
Q Consensus 1631 ~~~~Al~~L~~~~ 1643 (1880)
-..++-..|++.+
T Consensus 208 ~ta~a~~ll~~al 220 (287)
T COG4235 208 MTAKARALLRQAL 220 (287)
T ss_pred ccHHHHHHHHHHH
Confidence 4456666666654
No 408
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=44.33 E-value=2.5e+02 Score=37.59 Aligned_cols=110 Identities=18% Similarity=0.194 Sum_probs=77.9
Q ss_pred hhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCC
Q 000194 87 LGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDR 165 (1880)
Q Consensus 87 ~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~ 165 (1880)
.+...+++.|+.+. +. .-..|.+-|...|. .+..+-.+...||.++...++-....++ .+++.++..|+-|.
T Consensus 51 t~s~~~~~il~~~~--~P--~~K~~~~~l~~~~~---~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~ 123 (668)
T PF04388_consen 51 TNSQRALEILVGVQ--EP--HDKHLFDKLNDYFV---KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDT 123 (668)
T ss_pred cCcHHHHHHHHhcC--Cc--cHHHHHHHHHHHHc---CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcc
Confidence 34455677777764 22 11244555555553 3567788888999998864444444555 47888888888788
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l 203 (1880)
+...=.+|+.+|-.|.=..|..+.+||+.+|......+
T Consensus 124 ~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 124 SITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 87888899999999998999999999999998655444
No 409
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=43.84 E-value=1e+03 Score=32.43 Aligned_cols=178 Identities=16% Similarity=0.114 Sum_probs=94.3
Q ss_pred HhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHh
Q 000194 613 FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARL 692 (1880)
Q Consensus 613 ~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l 692 (1880)
..+|++...++.+.....- ...+.+...+...+ .+..++++...|+-..++++.++...++.+.|-...+++.+-...
T Consensus 507 LT~~~a~~t~~~~~n~~~~-~~~~~lenl~~lvl-~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv 584 (947)
T COG5657 507 LTTREAYSTIFDDWNFSVC-SKIGLLENLILLVL-SLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLV 584 (947)
T ss_pred HHHHHHHHHHHHhcccccc-cccccHHHHHHHHH-HhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHH
Confidence 4678888887776543321 22333344333333 333343566778889999999999999999997666666655543
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCc-------hhhHHHHHHHHHHHHhhcCccc
Q 000194 693 LEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA-------VTKREVAVSTLGQVVQSTGYVI 765 (1880)
Q Consensus 693 ~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~-------~~~r~~Al~~Lg~l~~~~~~~i 765 (1880)
.........+.+.......+|.++... ....++.+|.++..+.-... .+-=...+..+..+.+..+..+
T Consensus 585 ~~~~knps~p~~~h~~fe~I~al~~~~----~~~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~ 660 (947)
T COG5657 585 EINAKNPSNPQFAHYTFEDIGALVFLK----SGMCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDV 660 (947)
T ss_pred HHHccCCccHHHHHHHHHHHHHHHHhh----hcccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCc
Confidence 321111135666667777777776532 22233445555555432100 0111122334444444333211
Q ss_pred ccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 766 TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 766 ~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
.|.++..+.+....++-+..+.+.++....+
T Consensus 661 -----lp~v~~~l~q~~~~t~ll~~~~~I~~~~~Ll 691 (947)
T COG5657 661 -----LPSVVKILRQPSLATELLPTKLEILKSYRLL 691 (947)
T ss_pred -----CchHHHHHhcccCchHHHHHHHHHHHHHHHH
Confidence 3555655555433344566666666554443
No 410
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=43.79 E-value=87 Score=32.38 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHH
Q 000194 1286 IDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYE 1365 (1880)
Q Consensus 1286 i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e 1365 (1880)
++++.+...-..++.....+.|+|..+... .........|+.+|.+.+..+.. ..++.....++........+
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~------~~~~~~~~~li~ly~~~~~~~ll-~~l~~~~~~yd~~~~~~~c~ 80 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN------SENPALQTKLIELYAKYDPQKEI-ERLDNKSNHYDIEKVGKLCE 80 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC------ccchhHHHHHHHHHHHHCHHHHH-HHHHhccccCCHHHHHHHHH
Confidence 667777777778888999999999877542 12345778999999988665544 43442223455555556678
Q ss_pred HhcCHHHHHHHHHH
Q 000194 1366 KLQRWDDALKAYTN 1379 (1880)
Q Consensus 1366 ~lg~W~~Al~~y~~ 1379 (1880)
+.|.|+.|.-.|.+
T Consensus 81 ~~~l~~~~~~l~~k 94 (140)
T smart00299 81 KAKLYEEAVELYKK 94 (140)
T ss_pred HcCcHHHHHHHHHh
Confidence 88888888888865
No 411
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=43.49 E-value=76 Score=30.25 Aligned_cols=59 Identities=24% Similarity=0.235 Sum_probs=45.8
Q ss_pred CchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHc
Q 000194 742 AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIMG 802 (1880)
Q Consensus 742 ~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~-~~~vr~~~l~~lg~lg 802 (1880)
++...|+-|...|+.+++..+.. .| ...|.++..+.+.+.++. +...+.-|+..|..+|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~-~~-~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSS-YP-TLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccc-cc-hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 36789999999999999988753 12 234788888888886543 6778888988888887
No 412
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.04 E-value=1.1e+02 Score=38.53 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~Rl 1772 (1880)
.+.++.-.|+.|++-+|+...||..++..+.+. + --..||..+.+|+.+.+ ..++.+.-|
T Consensus 300 ~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN----------E----~E~~ai~AL~rcl~LdP------~NleaLmaL 359 (579)
T KOG1125|consen 300 DLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN----------E----NEQNAISALRRCLELDP------TNLEALMAL 359 (579)
T ss_pred CchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc----------c----chHHHHHHHHHHHhcCC------ccHHHHHHH
Confidence 368889999999999999999999999887651 1 11267888888888752 334443333
Q ss_pred HHHHHhcCCcHHHHHHHHhcccCCChhhHH
Q 000194 1773 LTLWFNHGATEEVQIALQKGFAHVNINTWL 1802 (1880)
Q Consensus 1773 LtLwf~~g~~~~v~~~~~~~~~~ip~~~wl 1802 (1880)
---.-+-|...+..+.+.+=+..=|+|.|+
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p~y~~l 389 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKPKYVHL 389 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCccchhc
Confidence 322222233333444445545555555554
No 413
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=42.90 E-value=2.1e+02 Score=38.40 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=68.6
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1880)
++..|-..+.+ ..-|..++.+||.++...|..+..... .++..++..|+.+ .+...-..|+.+|..++-..+..+.
T Consensus 71 ~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D-~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 71 LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFD-TSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhc-ccHHHHHHHHHHHHHHhccccchhh
Confidence 34444444444 467899999999999999987655443 3444566677776 6676667788888888888889999
Q ss_pred CchHHHHHHHHHHhc
Q 000194 679 PYIAPIHKALVARLL 693 (1880)
Q Consensus 679 py~~~il~~ll~~l~ 693 (1880)
+|++.++.++...+.
T Consensus 148 ~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 148 PHLPDLFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988763
No 414
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.25 E-value=3.7e+02 Score=30.29 Aligned_cols=128 Identities=14% Similarity=0.131 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
|-.+.+++-++.-|-+++|+.|=.+..++..+.-.. +.....--.|..|--.+.+++ ..+|++.|+.-++-+
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~-----~skhDaat~YveA~~cykk~~---~~eAv~cL~~aieIy 103 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKA-----GSKHDAATTYVEAANCYKKVD---PEEAVNCLEKAIEIY 103 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHhhccC---hHHHHHHHHHHHHHH
Confidence 448899999999999999999999988876543211 111122333444444556663 689999999765432
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWAL 1720 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~ 1720 (1880)
.. ......-|+-+.-+|+.... .....+..+.+|+.|.++...- -|....-|.
T Consensus 104 t~----------------~Grf~~aAk~~~~iaEiyEs-----dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 104 TD----------------MGRFTMAAKHHIEIAEIYES-----DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred Hh----------------hhHHHHHHhhhhhHHHHHhh-----hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 11 12233445666666666542 1245677888888887776532 255555555
Q ss_pred HHH
Q 000194 1721 FNT 1723 (1880)
Q Consensus 1721 ~n~ 1723 (1880)
|..
T Consensus 163 yaa 165 (288)
T KOG1586|consen 163 YAA 165 (288)
T ss_pred HHH
Confidence 543
No 415
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=42.09 E-value=1.8e+02 Score=30.72 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCC-cchhHHHHHHHHHHHHhhcCccchhchHH--HHHHHHH
Q 000194 125 REILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDR-VEYRRFAAVLILKEMAENASTVFNVHVAE--FVDAIWV 201 (1880)
Q Consensus 125 ~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~-~~~~R~aA~~~l~~la~~~p~~l~~~l~~--i~~~i~~ 201 (1880)
.+.+..+-.++-.|.++|-..|..+-+..++++..++.... +.+.-+.|+-+|..++.++|.. ++.+.+ -++.+..
T Consensus 31 ~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 31 GEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhccCCHHHHHH
Confidence 36677788888888888654565555667788888876332 4556678889999999887764 333333 2466888
Q ss_pred HhcCCchhHHHHHHHHHHHHH
Q 000194 202 ALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~ 222 (1880)
.|.++++.++.-|..-+.+++
T Consensus 110 hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 888899999877776555543
No 416
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=41.30 E-value=4.4e+02 Score=28.24 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=55.3
Q ss_pred HHHHHHHHHHH-HcchhhhHHHHHHHHHHHHHHhhcch-hHHHHHHHHHhHhHhh-----hChhhHHHHHHHHHHHHHHH
Q 000194 258 HGSLLAVGELL-RNTGEFMMSRYREVAEIVLRYLEHRD-RLVRLSITSLLPRIAH-----FLRDRFVTNYLKICMNHILT 330 (1880)
Q Consensus 258 ~~al~~l~~ll-~~~~~~~~~~~~~i~~~ll~~~~~~~-~~Vr~~~~~~i~~la~-----~~~~~f~~~yl~~~~~~Ll~ 330 (1880)
..|..++.+|- ...++|+.|.++.+.+.+...+.++. ..+..=++-+-+.++. ..+.. + .++..+++.+..
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~-~-~~vk~L~~~mv~ 137 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMR-V-DLVKELLPKMVK 137 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccH-H-HHHHHHHHHHHH
Confidence 56677777776 45788999999999998888776653 2333222222122111 11111 1 134444444444
Q ss_pred h----hcCCCCcchHHHHHHHHHhhchhhhh
Q 000194 331 V----LRIPAERDSGFIALGEMAGALDGELF 357 (1880)
Q Consensus 331 ~----L~~~~~r~~a~~alg~la~~v~~~~~ 357 (1880)
. +.+..+.+...+++..+...+.+++.
T Consensus 138 Sv~elV~~g~E~~~l~rgl~~~e~~v~~~~~ 168 (174)
T PF04510_consen 138 SVKELVERGMEVGFLRRGLRDFESFVSRQMN 168 (174)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44555666777777777766666543
No 417
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=40.83 E-value=8.6e+02 Score=30.83 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHH-HHHHHhcCCchhHHHHHHHHHHHHHHHHh
Q 000194 168 YRRFAAVLILKEMAENASTVFNVHVAEFVD-AIWVALRDPTLAVRERAVEALRACLRVIE 226 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~~l~~~l~~i~~-~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1880)
+.|.+|..+|+.++...|.. -+..++. .++..|.+++..=|..|+-.+........
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~---~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~ 158 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPES---SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACK 158 (441)
T ss_pred HHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCc
Confidence 57999999999999987652 3345554 58899999999888888887777665443
No 418
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=40.68 E-value=74 Score=31.78 Aligned_cols=69 Identities=12% Similarity=0.028 Sum_probs=42.4
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l--~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
++.++..|....+...-.-|+.=+++++...|.. ...+ -..-+.|...|.++++.||..|..|+..++.
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4444455533223333334666778888887763 1122 1245678899999999999999999887653
No 419
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=40.61 E-value=58 Score=25.84 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDP 1600 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~ 1600 (1880)
..|+.++...+..|+++.|...+.++...+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5799999999999999999999999988766
No 420
>PLN02789 farnesyltranstransferase
Probab=40.52 E-value=7.3e+02 Score=29.92 Aligned_cols=135 Identities=12% Similarity=0.072 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.|=-|-.+-.+.++.+.|.....++...+|. +..+-.-+..++-..|+ .-.+++..+.+++.....
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~----------~ytaW~~R~~iL~~L~~--~l~eeL~~~~~~i~~npk 104 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPG----------NYTVWHFRRLCLEALDA--DLEEELDFAEDVAEDNPK 104 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch----------hHHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHCCc
Confidence 344545555566678899999998888887663 34454555566666663 236788888777653211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHh-hcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKR-ALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~-~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
. -.+ +...| |.. .+. ....++.+..+.++++.+|+++.+|++=+.....+ .
T Consensus 105 ------------------n--yqa--W~~R~-~~l~~l~----~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-~ 156 (320)
T PLN02789 105 ------------------N--YQI--WHHRR-WLAEKLG----PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-G 156 (320)
T ss_pred ------------------c--hHH--hHHHH-HHHHHcC----chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-h
Confidence 0 001 11111 111 111 11135678888999999999999998754443321 0
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
. ...+++.|-++|...
T Consensus 157 ------------~-~~eeL~~~~~~I~~d 172 (320)
T PLN02789 157 ------------G-WEDELEYCHQLLEED 172 (320)
T ss_pred ------------h-HHHHHHHHHHHHHHC
Confidence 1 225677777777653
No 421
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=39.89 E-value=5.8e+02 Score=32.75 Aligned_cols=114 Identities=21% Similarity=0.169 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc
Q 000194 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY 633 (1880)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1880)
...+..++..++-....|-++.+|.-.+.+|... .....|+-....++..--.|.|.+..||....+++..|+..+|..
T Consensus 269 ~d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~ 348 (740)
T COG5537 269 RDEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT 348 (740)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc
Confidence 3445666666666677888999999888888631 111122211112333334678999999999999999999999853
Q ss_pred --ccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 000194 634 --VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1880)
Q Consensus 634 --v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1880)
+...+.++....|.-+..+ .+. +|..+++.+..+-
T Consensus 349 d~ir~f~eRFk~rILE~~r~D-~d~-VRi~sik~l~~lr 385 (740)
T COG5537 349 DAIRRFVERFKDRILEFLRTD-SDC-VRICSIKSLCYLR 385 (740)
T ss_pred hHHHHHHHHHHHHHHHHHhhc-cch-hhHHHHHHHHHHH
Confidence 2222333333333333344 334 7777777766654
No 422
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=39.81 E-value=5e+02 Score=31.74 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCC
Q 000194 295 RLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR 374 (1880)
Q Consensus 295 ~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~ 374 (1880)
..++..++.++..|..|-. .|.+.--++++..+..-|.. +.-.....+|.--+..++..+.++++.|+..+.......
T Consensus 211 ~D~~~~~~~~Ls~LisYh~-~~~k~~qd~iV~~l~~GL~s-~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~ 288 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHS-HFSKQEQDEIVRALESGLGS-KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTP 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccch
Confidence 4466667777777766533 12222224555555554433 111234444444555567778889999888876544322
Q ss_pred CCCCCchHHHHHHHHHH
Q 000194 375 RGKPSLEALACVGNIAR 391 (1880)
Q Consensus 375 ~~~~~~~a~~~l~~la~ 391 (1880)
......++.++.++.
T Consensus 289 --~~Ai~ILEFLs~L~~ 303 (356)
T PF03542_consen 289 --NMAIHILEFLSSLSR 303 (356)
T ss_pred --hhHHHHHHHHHHHhh
Confidence 222345555555544
No 423
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=39.81 E-value=4.4e+02 Score=27.58 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 000194 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1880)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~ 759 (1880)
...+..+..++... ++.+...++..+..++..+|..|...+ .+++..+.+.+.+..+..+++.++..+.....
T Consensus 36 k~a~ral~KRl~~~-----n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHK-----DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 56777888888864 788998899999999999998665444 36777777777765567788888888777776
Q ss_pred hcCc
Q 000194 760 STGY 763 (1880)
Q Consensus 760 ~~~~ 763 (1880)
....
T Consensus 111 ~f~~ 114 (144)
T cd03568 111 EFKN 114 (144)
T ss_pred HhCC
Confidence 6543
No 424
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=39.46 E-value=6.1e+02 Score=31.00 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCC--------------cchhHHHHH
Q 000194 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD--------------DYLKDYITW 921 (1880)
Q Consensus 856 ~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~--------------~~~~~~~~~ 921 (1880)
+..++.++++|+.+..-+....+..-+...+.+-..-+..-++++...+.+.+.+.. .++...++.
T Consensus 140 s~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~ 219 (356)
T PF03542_consen 140 SEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFP 219 (356)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHH
Confidence 466788888898776656665666666655554221111226666666666554321 124455566
Q ss_pred HHHHHHHHHHHhHH-HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhccccc
Q 000194 922 KLGTLVSIVRQHIR-KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAE 1000 (1880)
Q Consensus 922 ~l~~lv~~~~~~i~-~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~ 1000 (1880)
.|+.++.- ..++. .--++|+..+...+.... ..+++.++.-.+..+++.+++++|.++-.+-+....
T Consensus 220 ~Ls~LisY-h~~~~k~~qd~iV~~l~~GL~s~~---------a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt-- 287 (356)
T PF03542_consen 220 VLSALISY-HSHFSKQEQDEIVRALESGLGSKT---------AKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTT-- 287 (356)
T ss_pred HHHHHHHH-HHhcCHhHHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc--
Confidence 66666642 33343 234577777766554321 126788887778888999988888887776544422
Q ss_pred ccCchhhHHHHHHHHHHHh
Q 000194 1001 RCNDYTYVLDILHTLEVFG 1019 (1880)
Q Consensus 1001 ~~~~~~~~~~il~~l~~~g 1019 (1880)
...+..+|+.+..++
T Consensus 288 ----~~~Ai~ILEFLs~L~ 302 (356)
T PF03542_consen 288 ----PNMAIHILEFLSSLS 302 (356)
T ss_pred ----hhhHHHHHHHHHHHh
Confidence 234556666665543
No 425
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=39.34 E-value=1.1e+03 Score=31.51 Aligned_cols=135 Identities=21% Similarity=0.195 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|+--+.+--+.++.+.+..+|..+.+.++. .+.+.+.....+=.+| +..+|...+..-+ ..
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l----------~~~~~~~~G~~~~~~~---~~~EA~~af~~Al---~l 713 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPL----------SASVYYLRGLLLEVKG---QLEEAKEAFLVAL---AL 713 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh----------hHHHHHHhhHHHHHHH---hhHHHHHHHHHHH---hc
Confidence 567999999999999999999999998876542 2445555545544555 4577776654422 21
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
+|+ ...--.-+|++++..|+ ....+.......|.+++|.+.++|++.|...-.
T Consensus 714 dP~------------hv~s~~Ala~~lle~G~-----------~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~---- 766 (799)
T KOG4162|consen 714 DPD------------HVPSMTALAELLLELGS-----------PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK---- 766 (799)
T ss_pred CCC------------CcHHHHHHHHHHHHhCC-----------cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----
Confidence 111 11122447889988882 234555557788999999999999999966332
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
+| -...|..||.-|+.+.
T Consensus 767 ---~G-------d~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 767 ---LG-------DSKQAAECFQAALQLE 784 (799)
T ss_pred ---cc-------chHHHHHHHHHHHhhc
Confidence 23 1228999999999885
No 426
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.30 E-value=4.6e+02 Score=27.20 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=64.6
Q ss_pred HHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHhcC
Q 000194 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDG 741 (1880)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~d~ 741 (1880)
.-|++.++..+ ......+..+.+++..+ ++.+...++..+..++..+|..|...+ ..++..+.+.+.+.
T Consensus 27 l~icD~i~~~~----~~~kea~~~l~krl~~~-----~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 27 LEICDLINSSP----DGAKEAARALRKRLKHG-----NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK 97 (140)
T ss_dssp HHHHHHHHTST----THHHHHHHHHHHHHTTS-----SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC----ccHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence 34566666542 22366778888888875 889999999999999999998776654 35677777766654
Q ss_pred Cchh---hHHHHHHHHHHHHhhcCc
Q 000194 742 AAVT---KREVAVSTLGQVVQSTGY 763 (1880)
Q Consensus 742 ~~~~---~r~~Al~~Lg~l~~~~~~ 763 (1880)
.... +|+.++..+..-....+.
T Consensus 98 ~~~~~~~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 98 KTDPETPVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp TTHHHSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCchhHHHHHHHHHHHHHHHHHCC
Confidence 4333 788888887777666543
No 427
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=39.00 E-value=2.1e+02 Score=33.47 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=59.8
Q ss_pred hhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHH
Q 000194 1668 VPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVT 1747 (1880)
Q Consensus 1668 ~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~ 1747 (1880)
-..+|-+|.+||++ ++.++--+.|+.+||.+.|+|-+++.....+ .+ ...|++
T Consensus 118 ycNRAAAy~~Lg~~-------------~~AVkDce~Al~iDp~yskay~RLG~A~~~~-------------gk-~~~A~~ 170 (304)
T KOG0553|consen 118 YCNRAAAYSKLGEY-------------EDAVKDCESALSIDPHYSKAYGRLGLAYLAL-------------GK-YEEAIE 170 (304)
T ss_pred HHHHHHHHHHhcch-------------HHHHHHHHHHHhcChHHHHHHHHHHHHHHcc-------------Cc-HHHHHH
Confidence 34578889999886 4567778899999999999999998775431 12 236788
Q ss_pred HHHHHHhhccccCCCcchHHhHHHHHHHHHhcCC
Q 000194 1748 GYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGA 1781 (1880)
Q Consensus 1748 ~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~ 1781 (1880)
.|-|+|.+.+ ...++..-++....-+.-..
T Consensus 171 aykKaLeldP----~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 171 AYKKALELDP----DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHhhhccCC----CcHHHHHHHHHHHHHhcCCC
Confidence 8999998864 23356666666665555443
No 428
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.91 E-value=1.8e+02 Score=36.46 Aligned_cols=40 Identities=28% Similarity=0.413 Sum_probs=31.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHh
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAAL 1404 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~L 1404 (1880)
.-+..+.+|++|+++|+..++-+++. .+...|+-||+.+.
T Consensus 434 ~al~~mk~ydkAleay~eale~dp~~---~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELDPSN---AEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHh
Confidence 34678889999999999988644332 57788999999875
No 429
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.77 E-value=5.5e+02 Score=38.67 Aligned_cols=183 Identities=19% Similarity=0.123 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhhcCCcc-cccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc-ccCchHH-HHHHHHHH
Q 000194 615 VREYAISVAGRLSEKNPA-YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAP-IHKALVAR 691 (1880)
Q Consensus 615 VR~~a~~~l~~l~~~~p~-~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~-il~~ll~~ 691 (1880)
-...++.-++.+...++. .+.-.+.+ +..++..... ...+.+..+..+...+++...+. ..+.+.. ++..+.+.
T Consensus 896 ~k~~tl~~I~~~i~~~g~~~v~~~~~~-i~~~L~~~~~--~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~ 972 (2382)
T KOG0890|consen 896 QKKKTLKGIKKLISFMGSKAVSTRLPK-IEFLLQFGTL--FKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPL 972 (2382)
T ss_pred HHHHHHHhHHHHHhhccHHHHHHHhHH-HHHHHHHhhh--cchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHH
Confidence 346778888888888873 33322222 2222222111 22355667777777777664322 2333343 56666666
Q ss_pred hccCCCCCCChhHH------------------------------HHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcC
Q 000194 692 LLEGTGINANNGII------------------------------SGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG 741 (1880)
Q Consensus 692 l~~~~~~~~~~~v~------------------------------~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~ 741 (1880)
+... ..... .+...+....++..+..- -+...++.+...+.+.
T Consensus 973 l~~~-----~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~~~~r~~~~~~--~l~~~l~~~~~~~~~e 1045 (2382)
T KOG0890|consen 973 LEHI-----ELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAIQEARGLLSED--DLDDQLRDFMKKLKHE 1045 (2382)
T ss_pred hccc-----cHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHHHHHHhhcccc--chhhhhHHHHHHhHhh
Confidence 6321 01110 111122222222222110 2344555555555543
Q ss_pred CchhhHHHHHHHHHHHHhhc--------CcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccch
Q 000194 742 AAVTKREVAVSTLGQVVQST--------GYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAH 809 (1880)
Q Consensus 742 ~~~~~r~~Al~~Lg~l~~~~--------~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~ 809 (1880)
...+|-.++.-|+...... +..+.|-....++++.|+.--... .......+.+|||.+||+||..+
T Consensus 1046 -nl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~-~~~~~~~~akcLg~lgaidp~~~ 1119 (2382)
T KOG0890|consen 1046 -NLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKK-TSQLEELCAKCLGELGAIDPSCH 1119 (2382)
T ss_pred -hhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCchhh
Confidence 3456666666666555411 111222222334555555443322 25688889999999999999854
No 430
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=38.52 E-value=2.1e+02 Score=30.47 Aligned_cols=122 Identities=15% Similarity=0.112 Sum_probs=65.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHH
Q 000194 205 DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REV 282 (1880)
Q Consensus 205 D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i 282 (1880)
...+.+|-.|.-++..+++.-. ..+...+-+-+...+.++. .+....++.++..+....++...+-| +.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~-------~~~~~~~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~ 87 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAR-------EEFKEKISDFIESLLDEGE-MDSLIIAFSALTALFPGPPDVGSELFLSEGF 87 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCHH-CCHHHHHHHHHHHHCTTTHHHHHHHCCTTTH
T ss_pred CCCHhHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHcccc-chhHHHHHHHHHHHhCCCHHHHHHHHhhhhH
Confidence 4567899999888888753211 1222222222222232221 23455556666666554444333221 124
Q ss_pred HHHHHHHhh--cchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC
Q 000194 283 AEIVLRYLE--HRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA 336 (1880)
Q Consensus 283 ~~~ll~~~~--~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~ 336 (1880)
.+.++.... .+++.++.++++++..-|.. +.-........+++|...+++.+
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~ 141 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSK 141 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHcccc
Confidence 444555555 68889999999999865432 21122223566888888886443
No 431
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.31 E-value=2.5e+02 Score=35.46 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HH
Q 000194 563 EKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RR 640 (1880)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~ 640 (1880)
++-......+|||.+-..+++.++.+. .. ..+.++.|..-++..+..|...|+.+|..++++|+..|--.+ .+
T Consensus 7 dkAT~~~l~~pDWa~NleIcD~IN~~~-~~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~ 81 (470)
T KOG1087|consen 7 DKATSESLAEPDWALNLEICDLINSTE-GG----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKE 81 (470)
T ss_pred HHhhcccccCccHHHHHHHHHHHhcCc-cC----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333457899999999999997422 11 247899999999999889999999999999999986553222 23
Q ss_pred HHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc
Q 000194 641 HLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 641 ~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
+|.+++....+.+.+..+|+.++.+|..=-...+
T Consensus 82 fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~ 115 (470)
T KOG1087|consen 82 FLNEMVKRPKNKPRDLKVREKILELIDTWQQAFC 115 (470)
T ss_pred HHHHHHhccccCCcchhHHHHHHHHHHHHHHHcc
Confidence 4444444444432456778887777766655543
No 432
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=37.29 E-value=1.9e+02 Score=29.76 Aligned_cols=74 Identities=12% Similarity=0.155 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHH-HHHHHHHHhhcCC-----CCcchHHHHHHHHHhhchh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLK-ICMNHILTVLRIP-----AERDSGFIALGEMAGALDG 354 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~-~~~~~Ll~~L~~~-----~~r~~a~~alg~la~~v~~ 354 (1880)
+.+..+...+.++++.++..++.++..+...++..|...+-. ..+..+...+.+. ..|..++..+..-+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345556666788999999999999999999998878654444 6666666666542 1356777777777766654
No 433
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=36.81 E-value=42 Score=24.58 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhc
Q 000194 1361 ESWYEKLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~~ 1383 (1880)
+..|.++|++++|..+|++.++.
T Consensus 8 g~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 8 GKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 34588999999999999988764
No 434
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=36.71 E-value=1.3e+02 Score=36.33 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.|-+-.+-+=|+|+++.|+..-...++++|+. +--.+|+.|.++- ..--+..+++-+.+...
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-------------~~~naklY~nra~---v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-------------KKTNAKLYGNRAL---VNIRLGRLREAISDCNE 312 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-------------cchhHHHHHHhHh---hhcccCCchhhhhhhhh
Confidence 6778888899999999999999888888776642 1225677776652 12223333333332211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKR 1683 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~ 1683 (1880)
..+.. +.-...-...|+|++.+++|-.
T Consensus 313 Al~iD--------~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 313 ALKID--------SSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhhcC--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 10000 0001122457899999999954
No 435
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.69 E-value=1.7e+02 Score=35.31 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000194 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1880)
Q Consensus 1613 ~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~ 1692 (1880)
-..+...|.++-..|. ..++++.|++.+.+.. +.. .+.++|+.+...+
T Consensus 438 ~~AV~~~AEL~~~Eg~---~~D~i~LLe~~L~~~~-------------------D~~----LH~~Lgd~~~A~N------ 485 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGP---TKDIIKLLEKHLIIFP-------------------DVN----LHNHLGDIMRAQN------ 485 (564)
T ss_pred HHHHHHHHHHHHhhCc---cchHHHHHHHHHhhcc-------------------ccH----HHHHHHHHHHHhh------
Confidence 3456667777777774 4689999998765532 112 3788999998764
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1880)
.+.+.+.+|..|..++|++.++-..+-+
T Consensus 486 e~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 486 EPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 4799999999999999999988775543
No 436
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.75 E-value=7.2e+02 Score=31.18 Aligned_cols=154 Identities=16% Similarity=0.220 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
+..-.+++.+-+.-|.++++-+.+.......--|+ .|+|.-=++.+|=+++ +-..|++....-+ ++
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~----------~~Evy~~fAeiLtDqq---qFd~A~k~YD~ai-~L 491 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN----------CPEVYNLFAEILTDQQ---QFDKAVKQYDKAI-EL 491 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------CchHHHHHHHHHhhHH---hHHHHHHHHHHHH-hh
Confidence 34566777777788888999998888776554342 3677777888888877 4677888776543 22
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
... ...+ ...-..+..+.. ++.+|. ++++...+...+|+++||+.+.|+..+|.+--.
T Consensus 492 E~~--~~~~--------~v~~~plV~Ka~-l~~qwk---------~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ-- 549 (606)
T KOG0547|consen 492 EPR--EHLI--------IVNAAPLVHKAL-LVLQWK---------EDINQAENLLRKAIELDPKCEQAYETLAQFELQ-- 549 (606)
T ss_pred ccc--cccc--------cccchhhhhhhH-hhhchh---------hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH--
Confidence 211 0000 011223444443 334486 457889999999999999999999999977322
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHH
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTL 1775 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtL 1775 (1880)
..-+..||+-|=+|+.+. -+...++...|+
T Consensus 550 ------------~~~i~eAielFEksa~lA-------rt~~E~~~a~s~ 579 (606)
T KOG0547|consen 550 ------------RGKIDEAIELFEKSAQLA-------RTESEMVHAYSL 579 (606)
T ss_pred ------------HhhHHHHHHHHHHHHHHH-------HhHHHHHHHHHH
Confidence 134568999999999884 245566666664
No 437
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.62 E-value=2e+02 Score=28.02 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=38.7
Q ss_pred hhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCC
Q 000194 1395 LGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDG 1456 (1880)
Q Consensus 1395 ~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~ 1456 (1880)
+-++-+|-+-|+|+.........- ...+-|++|-|+|++|-=+..+.++..+..+
T Consensus 44 lIr~~sLmNrG~Yq~ALl~~~~~~-------~pdL~p~~AL~a~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 44 LIRLSSLMNRGDYQEALLLPQCHC-------YPDLEPWAALCAWKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHTT-HHHHHHHHTTS---------GGGHHHHHHHHHHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHhhHHHHHHHHhcccCC-------CccHHHHHHHHHHhhccHHHHHHHHHHHHhC
Confidence 345567888999998866554321 2356789999999999999999999866543
No 438
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.10 E-value=8.4e+02 Score=29.02 Aligned_cols=147 Identities=12% Similarity=0.137 Sum_probs=90.4
Q ss_pred HHHHHHHhCCC-CHhHHH---HHHHHHHhhhcCCcccccHH-HHH----HHHHHHHHHhcCCCChHhHHHHHHHHHHHHH
Q 000194 601 LSAIFAALNDE-DFDVRE---YAISVAGRLSEKNPAYVLPA-LRR----HLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1880)
Q Consensus 601 l~~L~~~l~D~-~~~VR~---~a~~~l~~l~~~~p~~v~p~-l~~----~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1880)
+..|+.++.|. ...+|. .++.+|..|+-... +... .++ .+..++ ++++ .++.+-++++.++..++-
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds--vKs~IV~~gg~~~ii~l~--~~h~-~~p~Vi~~~~a~i~~l~L 359 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS--VKSTIVEKGGLDKIITLA--LRHS-DDPLVIQEVMAIISILCL 359 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc--hHHHHHHhcChHHHHHHH--HHcC-CChHHHHHHHHHHHHHHh
Confidence 67788888874 455664 45555555554431 1111 111 122222 2455 678888888888888888
Q ss_pred hCcccccCchHH-HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHH
Q 000194 672 NCERLIRPYIAP-IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVA 750 (1880)
Q Consensus 672 ~~~~~~~py~~~-il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~A 750 (1880)
..|+.-..+++. .-...++.++.- .....|..+++..|-.++..+.+.-.+.+..=+..++..-... ....+..|
T Consensus 360 R~pdhsa~~ie~G~a~~avqAmkah---P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~-h~tce~~a 435 (461)
T KOG4199|consen 360 RSPDHSAKAIEAGAADLAVQAMKAH---PVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKAN-HETCEAAA 435 (461)
T ss_pred cCcchHHHHHhcchHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhc-CccHHHHH
Confidence 777766655553 445566666643 1256677889999999988887777787777777777665533 34455544
Q ss_pred HHHHHH
Q 000194 751 VSTLGQ 756 (1880)
Q Consensus 751 l~~Lg~ 756 (1880)
-.+|-.
T Consensus 436 kaALRD 441 (461)
T KOG4199|consen 436 KAALRD 441 (461)
T ss_pred HHHHHh
Confidence 444443
No 439
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=35.05 E-value=96 Score=30.50 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=46.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH
Q 000194 1619 YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEII 1698 (1880)
Q Consensus 1619 ~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~ 1698 (1880)
.|+-.|.+|+ ...|++++++++..-....+. -....+.+.++..+|.=.... +....-.-..+
T Consensus 2 ~A~~~~~rGn---hiKAL~iied~i~~h~~~~~~------------~~lh~~QG~if~~lA~~ten~--d~k~~yLl~sv 64 (111)
T PF04781_consen 2 KAKDYFARGN---HIKALEIIEDLISRHGEDESS------------WLLHRLQGTIFYKLAKKTENP--DVKFRYLLGSV 64 (111)
T ss_pred hHHHHHHccC---HHHHHHHHHHHHHHccCCCch------------HHHHHHHhHHHHHHHHhccCc--hHHHHHHHHhH
Confidence 5778899997 478999999988654321100 001133445555555533211 11111133455
Q ss_pred HHHHHHHhhcccchHHHHHHH
Q 000194 1699 AAYRNATQCATKWGKAWHSWA 1719 (1880)
Q Consensus 1699 ~~y~~a~~~~~~~~k~w~~wA 1719 (1880)
+.|++++.+.|......+..|
T Consensus 65 e~~s~a~~Lsp~~A~~L~~la 85 (111)
T PF04781_consen 65 ECFSRAVELSPDSAHSLFELA 85 (111)
T ss_pred HHHHHHhccChhHHHHHHHHH
Confidence 778888888887744444444
No 440
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=34.94 E-value=7.3e+02 Score=28.26 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhC---cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH--hHHHHHH
Q 000194 661 ESAKLLGCLIRNC---ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIV 735 (1880)
Q Consensus 661 ~a~~~L~~l~~~~---~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~l~p~l~ 735 (1880)
+|+.+|.+++.+. ..+++.+++-. +.+.+......++...++.+++..||.|.+.+...+..|+- +++|..+
T Consensus 98 naL~LlQcvASHpdTr~~FL~A~iPly---lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 98 NALALLQCVASHPDTRRAFLRAHIPLY---LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHhcCcchHHHHHHccChhh---hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 4666666666542 12333333322 33444433222356778889999999999988877877774 7899999
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhhc-Cc--ccccC---CcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 736 EALLDGAAVTKREVAVSTLGQVVQST-GY--VITPY---NEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 736 ~~l~d~~~~~~r~~Al~~Lg~l~~~~-~~--~i~p~---~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+.+..+ +...+..|...++++...- |- ...-| .....+++.+...+.+..+..+-..+++|.-.+.
T Consensus 175 rime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 175 RIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS 246 (293)
T ss_pred HHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 998766 4556778888888776331 11 11111 1223455555555555557777777788765553
No 441
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=34.66 E-value=3.8e+02 Score=29.44 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc
Q 000194 107 KVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST 186 (1880)
Q Consensus 107 ~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~ 186 (1880)
.+.||.+.+..+.- +.|..++..|.+.++.+.+-|=.-+.+.++..+. |..+.++..|.-|...++.+.+.=|+
T Consensus 5 l~Qryl~~Il~~~~-~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIA-----L~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 5 LVQRYLKNILELCL-SSDDSVRLAALQVLELILRQGLVNPKQCVPTLIA-----LETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhh-----hhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 45667666555543 5689999999999998877653334444443332 45678888999999999999998777
Q ss_pred cchhchH
Q 000194 187 VFNVHVA 193 (1880)
Q Consensus 187 ~l~~~l~ 193 (1880)
.+...+.
T Consensus 79 ~v~~~~~ 85 (187)
T PF12830_consen 79 LVESRYS 85 (187)
T ss_pred HHHHHHH
Confidence 6654433
No 442
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=34.50 E-value=6.4e+02 Score=27.43 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.|..+.|-.++.--.-+++-.|..+|..+++++|.. ..|.-.+.+++.+-++|.- .+|=.-++..+...
T Consensus 122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~--------r~pd~~Ll~aR~laa~g~~---a~Aesafe~a~~~y 190 (251)
T COG4700 122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF--------RSPDGHLLFARTLAAQGKY---ADAESAFEVAISYY 190 (251)
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc--------CCCCchHHHHHHHHhcCCc---hhHHHHHHHHHHhC
Confidence 567888888888778899999999999999887532 3456678899999998853 33444444433321
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
+.--++|+ +|+|+..... +.+.-.....-+..+.+-.+.|.|-...|-.+..+.+
T Consensus 191 ---------------------pg~~ar~~--Y~e~La~qgr--~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~ 245 (251)
T COG4700 191 ---------------------PGPQARIY--YAEMLAKQGR--LREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERL 245 (251)
T ss_pred ---------------------CCHHHHHH--HHHHHHHhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 12346665 7899876531 1222233334445555666666666666665554444
No 443
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=34.01 E-value=50 Score=31.22 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000194 255 HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1880)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~l 308 (1880)
..+||+++.|++++...+-.+.+++.+++..+-+..+ ....|+.++-.++...
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~-~~~~I~~tvk~tl~eF 56 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAN-DPQPIRTTVKKTLSEF 56 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSS-S-SSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 4699999999999987665566788888877666555 3666787777666644
No 444
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.70 E-value=6.9e+02 Score=28.27 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=82.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.....|+-.|-+.-+.|..+.|...-.+++.++|.. -.|.--|--+|..+| +..+|...++.-+.+-
T Consensus 67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~----------GdVLNNYG~FLC~qg---~~~eA~q~F~~Al~~P 133 (250)
T COG3063 67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN----------GDVLNNYGAFLCAQG---RPEEAMQQFERALADP 133 (250)
T ss_pred ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc----------cchhhhhhHHHHhCC---ChHHHHHHHHHHHhCC
Confidence 457899999999999999999999999999887642 345556788899999 4789999888755421
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
.-. .....-+.+.-|.++.|+ .+.....|+.+++++|+..-+....|..
T Consensus 134 ~Y~-------------~~s~t~eN~G~Cal~~gq-------------~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 134 AYG-------------EPSDTLENLGLCALKAGQ-------------FDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred CCC-------------CcchhhhhhHHHHhhcCC-------------chhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 100 001112334555555444 4667789999999999887776666654
No 445
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=33.04 E-value=9.8e+02 Score=29.17 Aligned_cols=93 Identities=22% Similarity=0.244 Sum_probs=53.7
Q ss_pred HHHhHhHhhhCh-hhHHHHHHHHHHHHHHHhhcCCCCc-chHHHHHHHHHhhchh-hhhhhhhHHHHHHHHhhcCCCCCC
Q 000194 302 TSLLPRIAHFLR-DRFVTNYLKICMNHILTVLRIPAER-DSGFIALGEMAGALDG-ELFHYLPTITSHLREAIAPRRGKP 378 (1880)
Q Consensus 302 ~~~i~~la~~~~-~~f~~~yl~~~~~~Ll~~L~~~~~r-~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~l~~~~~~~ 378 (1880)
.-++|-.|.-+| ..|+++.-+.++|+-...+ +.+| ..-+.++++|.....- .....+|.|++.++++....+..+
T Consensus 222 ~~AvPfFargapSskf~~y~n~~~ip~~fdkl--~e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~e 299 (460)
T KOG2213|consen 222 LMAVPFFARGAPSSKFVEYLNKHIIPHHFDKL--TEERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGE 299 (460)
T ss_pred HHhhhhhhcCCchhHHHHHHHhhhcccccccc--hHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccH
Confidence 346677777665 4577633356666611111 1223 3456666666554422 234678889999998885443222
Q ss_pred --CchHHHHHHHHHHHhCCC
Q 000194 379 --SLEALACVGNIARAMGPV 396 (1880)
Q Consensus 379 --~~~a~~~l~~la~~~g~~ 396 (1880)
...-.+|+-.+-..+|..
T Consensus 300 e~~fsyvEClly~~h~Lg~k 319 (460)
T KOG2213|consen 300 EMQFSYVECLLYALHHLGHK 319 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 135678888887777743
No 446
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=32.59 E-value=1.3e+03 Score=30.29 Aligned_cols=204 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC--CChhhhhhHHHHHhHhh-
Q 000194 21 GSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES--NDAAENLGALRAIDELI- 97 (1880)
Q Consensus 21 ~~~~~~~~l~~~l~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s--~~~~~r~~~i~ai~~Li- 97 (1880)
|+++.--.+++..... .+.+.+. +=.++ .+..++++.-.+...++....+..+++ .......|.+.-.+..+
T Consensus 337 m~~~~q~~~v~~f~p~-~~~~n~~--lw~~~--~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~~~~s~g~l~~~~~~Ls 411 (559)
T PF14868_consen 337 MAPDHQSEFVQDFSPS-AETENLL--LWEGF--PLNALSDELRKQIVQEIFTLCFAFCQKWLSPSSCSLGELGQLNFALS 411 (559)
T ss_pred cCHHHHHHHHHhcCcc-ccccchH--HHHhc--cHHhCCHHHHHHHHHHHHHHHHHHHHHhcccCCcCcchHhHHHHHHH
Q ss_pred ----------ccccCcchhHHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCC
Q 000194 98 ----------DVALGENASKVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD 164 (1880)
Q Consensus 98 ----------~~~~~~~~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~ 164 (1880)
+.-......-+.....-+...+.. ..++.+...-+..++-+..--+...++.+...+-..-.++..+
T Consensus 412 alL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~ 491 (559)
T PF14868_consen 412 ALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQLLDPQLIEQVLTELTSLFKSE 491 (559)
T ss_pred HHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhhC
Q ss_pred CcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHhhhc
Q 000194 165 RVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIEKRE 229 (1880)
Q Consensus 165 ~~~~~R~aA~~~l~~la~~-~p~~l~~~l~~i~~~i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1880)
.+...|.+.+.+++-+++. .|......+-.-+..++..| +|.+-.|+.-|.+|++.+.+.....+
T Consensus 492 pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~~e~ 558 (559)
T PF14868_consen 492 PPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTSHEE 558 (559)
T ss_pred CCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCCccc
No 447
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=32.35 E-value=6.4e+02 Score=26.82 Aligned_cols=113 Identities=15% Similarity=0.028 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHH
Q 000194 1616 MYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIP 1695 (1880)
Q Consensus 1616 ~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~ 1695 (1880)
.+-.+...+..|+ ..+|+..++..+.... +....+.++..+|.-.... ...+
T Consensus 38 ~~~~g~~~~~~g~---~~~A~~~~~~al~l~~-------------------~~~~~~~~~~~lg~~~~~~------g~~~ 89 (168)
T CHL00033 38 YYRDGMSAQSEGE---YAEALQNYYEAMRLEI-------------------DPYDRSYILYNIGLIHTSN------GEHT 89 (168)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHhccc-------------------cchhhHHHHHHHHHHHHHc------CCHH
Confidence 3445566666774 6789988887654211 0111233455555544433 3468
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1696 EIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1696 ~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
+.+..|..|.+.+|....+|..+|......-+.+...++.+....+...|+..|-+++...
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999998887766433222122211222346667788887777653
No 448
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=32.26 E-value=86 Score=22.88 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=22.8
Q ss_pred HHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000194 1673 RVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1880)
Q Consensus 1673 ~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1880)
+.+..+|.-...+ ...++..++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~------~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQL------GDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHT------TSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCC
Confidence 4555566655544 3468899999999999884
No 449
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=32.08 E-value=1.2e+02 Score=28.48 Aligned_cols=66 Identities=11% Similarity=0.229 Sum_probs=48.1
Q ss_pred hhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHH
Q 000194 1028 LLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALC 1093 (1880)
Q Consensus 1028 ~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~ 1093 (1880)
.++-++..++....+.++|...++++..+... .++..=...++..+..+..++++++...|++++-
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 35566666766667889999999999999764 3344445566777777777677888888888763
No 450
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=31.95 E-value=5.8e+02 Score=29.77 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=57.6
Q ss_pred hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccccc-chhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000194 1023 DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVT-GHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101 (1880)
Q Consensus 1023 ~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~~~-~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~ 1101 (1880)
++|-..++--++.+++++ +..+|..+++.|..+.+.+++. ++.+.++.++.|.+.++ ....|+++|-.++..-|.
T Consensus 183 P~~~~~~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 183 PDHEFQILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTD---LWMEALEVLDEIVTRSGS 258 (262)
T ss_pred chhHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhccc
Confidence 455555666677777664 6789999999999999987764 48889999999999864 567788888777666554
No 451
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=31.80 E-value=7.9e+02 Score=28.50 Aligned_cols=144 Identities=13% Similarity=0.092 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh----CCCCchhHHHHHHHHHHhhhcCC-C---cchhHHHHHHHH-
Q 000194 107 KVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA----GGAMTADEVEFQVKMALDWLRGD-R---VEYRRFAAVLIL- 177 (1880)
Q Consensus 107 ~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~----~g~~~~~~v~~~~~~~~~~l~~~-~---~~~~R~aA~~~l- 177 (1880)
.+.+...++...+-...-..+...+..+|..++.. ......++...-++..++.+..+ . .-.||-|++-++
T Consensus 93 ~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i 172 (255)
T PF10350_consen 93 QIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLI 172 (255)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHH
Confidence 44455454444443233345666666666666553 12233445555666677776654 2 257888876554
Q ss_pred HHHHhhcCccchhchHHHHHHHHHHhcCCch--------hHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhcc
Q 000194 178 KEMAENASTVFNVHVAEFVDAIWVALRDPTL--------AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLG 249 (1880)
Q Consensus 178 ~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~--------~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~ 249 (1880)
..+....|..-.+.+...+..++...+.|.. .-|.-|.+.|+.++..-.- ......++...+..++.++.
T Consensus 173 ~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L--~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 173 LAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKL--SEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHhCC
Confidence 3344455543236777777777777766654 3556666666666542111 11334566777777888887
Q ss_pred CCC
Q 000194 250 RNA 252 (1880)
Q Consensus 250 ~~~ 252 (1880)
++.
T Consensus 251 s~~ 253 (255)
T PF10350_consen 251 SPD 253 (255)
T ss_pred Ccc
Confidence 763
No 452
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.67 E-value=2.9e+02 Score=35.18 Aligned_cols=170 Identities=20% Similarity=0.223 Sum_probs=82.1
Q ss_pred CChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc
Q 000194 1339 HQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW 1418 (1880)
Q Consensus 1339 ~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~ 1418 (1880)
++.+.+.|++....+. .-+.....+|++|..++||+.- .++ ..+..+..++|+.+.-.+++.+..
T Consensus 600 rd~~~a~~vLp~I~k~-~rt~va~Fle~~g~~e~AL~~s-------~D~-------d~rFelal~lgrl~iA~~la~e~~ 664 (794)
T KOG0276|consen 600 RDLEVADGVLPTIPKE-IRTKVAHFLESQGMKEQALELS-------TDP-------DQRFELALKLGRLDIAFDLAVEAN 664 (794)
T ss_pred ccccccccccccCchh-hhhhHHhHhhhccchHhhhhcC-------CCh-------hhhhhhhhhcCcHHHHHHHHHhhc
Confidence 6777777876543321 1222344679999888888653 233 235566777777776666655421
Q ss_pred CCCChHHHHh--------HHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC
Q 000194 1419 TPAEPAARLE--------MAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK 1490 (1880)
Q Consensus 1419 ~~~~~~~~~~--------~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~ 1490 (1880)
++..++.. =.+++-||.-+..||..+--.-+... +..-+..++.... ..+...-+|+...
T Consensus 665 --s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g--~~~~l~~la~~~~-~~g~~N~AF~~~~------- 732 (794)
T KOG0276|consen 665 --SEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSG--NAEGLAVLASLAK-KQGKNNLAFLAYF------- 732 (794)
T ss_pred --chHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcC--ChhHHHHHHHHHH-hhcccchHHHHHH-------
Confidence 11122110 01234444444445544332111110 0000000000000 0011111222211
Q ss_pred hhhhHHHHHHHHHHhHhhhhHHHHHH-hhcCCCCCCchhhHHHHHHHHHHHHHhh
Q 000194 1491 VLESYERAYSNMVRVQQLSELEEVID-YCTLPVGNPVAEGRRAIIRNMWTERIQG 1544 (1880)
Q Consensus 1491 ~~esy~ray~~l~~lq~L~ELeE~i~-~~~~~~~~~~~~~~~~~l~~~W~~Rl~~ 1544 (1880)
....|+++...|+.-|.+-|---+.. |. +.+.+.+...|++.|..
T Consensus 733 l~g~~~~C~~lLi~t~r~peAal~ArtYl---------ps~vs~iv~~wk~~l~k 778 (794)
T KOG0276|consen 733 LSGDYEECLELLISTQRLPEAALFARTYL---------PSQVSRIVELWKEDLSK 778 (794)
T ss_pred HcCCHHHHHHHHHhcCcCcHHHHHHhhhC---------hHHHHHHHHHHHHHhhh
Confidence 23456777777777777766554432 21 35677889999988763
No 453
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=31.61 E-value=1.7e+02 Score=29.52 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=36.2
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHH
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1880)
+++..|..-|+|.++.|+..++++|..++...+..|.-.+++.
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 5788889999999999999999999999998876666555543
No 454
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.37 E-value=1.1e+03 Score=29.29 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=44.3
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh--hhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHH
Q 000194 282 VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--DRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMA 349 (1880)
Q Consensus 282 i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~--~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la 349 (1880)
+++.++.+.....+..|++++.++=.++.-++ ..++. ..++|++...|.+.+.++.|+..+=.+.
T Consensus 346 iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~---~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 346 IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN---GGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh---ccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 56677777778888889888887776664332 11221 4567888888887777777777666653
No 455
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=31.29 E-value=2.6e+02 Score=32.71 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000194 1698 IAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1880)
Q Consensus 1698 ~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~ 1755 (1880)
..+|..|..+.|..++.|++.|..... ...-..||=.|.||+..
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~--------------~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASY--------------QGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHH--------------TT-HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhcc--------------ccchHHHHHHHHHHHhc
Confidence 578999999999999999999976442 12446888999999965
No 456
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=31.06 E-value=3.4e+02 Score=33.09 Aligned_cols=90 Identities=9% Similarity=0.228 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh-hhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHH
Q 000194 938 LQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN-DEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE 1016 (1880)
Q Consensus 938 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~-~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~ 1016 (1880)
.+.++.-+..+|....-+ .....++-++.+-.++. .+|..-+.+++..+-..++++ ...++.+++.-..
T Consensus 297 ~~~VIrglLK~WP~tnS~------KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~----HFQVAEraL~~wn 366 (457)
T KOG2085|consen 297 TETVIRGLLKYWPKTNSS------KEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSP----HFQVAERALYLWN 366 (457)
T ss_pred cHHHHHHHHHhcCCCCCc------ceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCCh----hHHHHHHHHHHHh
Confidence 478888899999876521 23478899999888885 579888888888888777542 4667777765543
Q ss_pred H--HhcchhhhhhhhHHHHHHhh
Q 000194 1017 V--FGGTLDEHMHLLLPALIRLF 1037 (1880)
Q Consensus 1017 ~--~g~~~~~~~~~ilp~l~~~l 1037 (1880)
. +-..+.+....|+|.+...+
T Consensus 367 Ne~i~~Li~~n~~~ilPiiFpaL 389 (457)
T KOG2085|consen 367 NEYIRSLISQNAEVILPIVFPAL 389 (457)
T ss_pred hHHHHHHHHhccceeeehhhHHH
Confidence 2 22333444444555544444
No 457
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=30.77 E-value=3.6e+02 Score=33.68 Aligned_cols=109 Identities=19% Similarity=0.100 Sum_probs=70.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 000194 1576 ASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA 1655 (1880)
Q Consensus 1576 a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~ 1655 (1880)
|.-.-..|.++-|.+.|..|....|. +|-.......++-..| +..+|++.+++.+.-.. +.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~----------N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~l~P---~~--- 373 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPD----------NPYYLELAGDILLEAN---KAKEAIERLKKALALDP---NS--- 373 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCC---Cc---
Confidence 33334457788888888887765542 3444444445555555 57899999998664211 10
Q ss_pred cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1656 ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1656 ~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
.--.-.+|..|++.|+ +.+.+...+..+.-+|++...|..+|..|.++
T Consensus 374 ---------~~l~~~~a~all~~g~-------------~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~ 421 (484)
T COG4783 374 ---------PLLQLNLAQALLKGGK-------------PQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL 421 (484)
T ss_pred ---------cHHHHHHHHHHHhcCC-------------hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 0012235666655555 45677778888888999999999999998874
No 458
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=30.70 E-value=3e+02 Score=29.14 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhcC-------CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCc----------hhHH
Q 000194 149 EVEFQVKMALDWLRG-------DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT----------LAVR 211 (1880)
Q Consensus 149 ~v~~~~~~~~~~l~~-------~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~----------~~VR 211 (1880)
-+.+.+-++.+|-.. .....|+.+=..++..++++.-..|.||..-+++.....|..-+ ...+
T Consensus 56 ~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L~ 135 (153)
T PF08146_consen 56 TFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNSSKTESKSKSWELW 135 (153)
T ss_pred hhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 456677888888742 23345556666677889999999999999999998777664333 3556
Q ss_pred HHHHHHHHHHHH
Q 000194 212 ERAVEALRACLR 223 (1880)
Q Consensus 212 ~aA~~al~~~~~ 223 (1880)
.....+|..|+.
T Consensus 136 ~~vL~~L~~~F~ 147 (153)
T PF08146_consen 136 RLVLSTLQKCFL 147 (153)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 459
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=30.18 E-value=9.4e+02 Score=28.06 Aligned_cols=200 Identities=12% Similarity=0.136 Sum_probs=102.7
Q ss_pred HHHHhhcCccch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc--hh-hH-HHHHHHHHHHHHhhccCCC
Q 000194 178 KEMAENASTVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TR-WR-VQWYYRMFEATQDGLGRNA 252 (1880)
Q Consensus 178 ~~la~~~p~~l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~-~~-~~~~~~~l~~~~~~l~~~~ 252 (1880)
..+.++.|..=. ..++.+.+.+++|++.+... +.+.+.+..+..+-.++- .. .+ .-.+-..+|.+...+.+++
T Consensus 47 ~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~--e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~ 124 (262)
T PF14225_consen 47 DVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTY--ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPN 124 (262)
T ss_pred HHHHHhCCccccCCCchhHHHHHhCccCCCCcH--HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccc
Confidence 345566666543 67788999999999987643 346666666554422211 11 11 1234567788888887764
Q ss_pred ---ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHH
Q 000194 253 ---PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHI 328 (1880)
Q Consensus 253 ---~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~L 328 (1880)
...........+..+.+..+ .+.+..++...-... ++++.-+++ ++ .+-.+.|.+.|--.++.+|
T Consensus 125 ~i~~~~~~~~~A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~----v~----~~l~~~f~P~~~~~~l~~L 193 (262)
T PF14225_consen 125 PIQPDQECIEIAEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQ----VV----SYLREAFFPDHEFQILTFL 193 (262)
T ss_pred cccccHHHHHHHHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHH----HH----HHHHHHhCchhHHHHHHHH
Confidence 11223344455655554222 123333433222111 122222222 22 2223344444556777788
Q ss_pred HHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhC
Q 000194 329 LTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1880)
Q Consensus 329 l~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g 394 (1880)
+..|.+.. -|...+..|..+...+.-. .|+.++++..+...+++. -..+|++.+..+...-|
T Consensus 194 l~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 194 LGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD---LWMEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhcc
Confidence 88887643 3566666666666555432 345555555555555432 12345555555444444
No 460
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=30.15 E-value=3.9e+02 Score=26.53 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=46.0
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHH--HHHHHHHH----HhcCCCChHhHHHHHHHHHH
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRR--HLIQLLTY----LEQSSADNKCREESAKLLGC 668 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~--~l~~~l~~----l~~~~~~~~~r~~a~~~L~~ 668 (1880)
++++.|..-+++.++.+...|+.++..++++++..+...+.. ++.+++.. ......+..+|+.+..++..
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 577888888889999999999999999999998766555533 22333221 11111345666666665543
No 461
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.98 E-value=96 Score=22.05 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1694 IPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
.+.+...|.+++...|.....|..++.|
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 5677889999999999999999999876
No 462
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=29.80 E-value=2.1e+02 Score=26.82 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Q 000194 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1880)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1880)
|.++...+.+. .+.+.|+..+.++..++...+..++.=-+.++.++-....++ +..+...++.++
T Consensus 19 L~Pf~~i~~~~-~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~-----~e~lv~~af~~~ 83 (86)
T PF09324_consen 19 LKPFEYIMSNN-PSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN-----DESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC-----CccHHHHHHHHH
Confidence 33333333455 678899999999999999988888888888888888887764 455665555554
No 463
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=29.32 E-value=2.3e+02 Score=28.49 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=48.5
Q ss_pred hhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHc
Q 000194 725 QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML-NGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 725 ~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L-~~~~~~~vr~~~l~~lg~lg 802 (1880)
.++..++|.+.+.+......+.|..+...++.++....- . +++++.++..+ ++.......+.++-++..+.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-----~--~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~ 73 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-----S--DEVLNALMESILKNWTQETVQRQALICLIVLC 73 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-----c--HHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 367889999999998555678888999999999877533 2 46777777655 33222223356677766653
No 464
>PRK05255 hypothetical protein; Provisional
Probab=28.66 E-value=6.7e+02 Score=27.06 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHH
Q 000194 1477 GTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALL 1556 (1880)
Q Consensus 1477 ~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL 1556 (1880)
..++.|+...++-...|.+.|...++-++--=.+.|.|......-.+........-+-...|++||-. .+-+..+.++
T Consensus 51 e~L~~Ai~ea~ri~~~eA~RRqlqyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~--~~d~al~e~~ 128 (171)
T PRK05255 51 EDLRDAILEAQRITSHEARRRQLQYIGKLMRNEDVEPIRAALDKLKNKHNQETARFHKLERWRDRLLA--EGDDALTEFL 128 (171)
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHh--CCHHHHHHHH
Confidence 46788888887765678999988877666554455555543321111111122223445889999975 2334555555
Q ss_pred HHHHhhcCCcccH---HHHHHHHHHHHhcCChhHHHHHHHHHh
Q 000194 1557 AVRALVLPPTEDV---ETWLKFASLCRKSGRISQARSTLVKLL 1596 (1880)
Q Consensus 1557 ~~R~~vl~~~e~~---~~~lk~a~laRk~g~~~~a~~~L~~l~ 1596 (1880)
..- |.-|. ..|+.-|+--+..++...+.+.|++.+
T Consensus 129 ~~~-----P~~DrQ~LRqLiR~A~kE~~~~kppk~~R~LF~~L 166 (171)
T PRK05255 129 EEY-----PDADRQQLRQLIRNAKKEKAQNKPPKSFRELFQYL 166 (171)
T ss_pred HHC-----chhhHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 332 44454 445555555555566666666666543
No 465
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=28.35 E-value=3e+02 Score=27.79 Aligned_cols=65 Identities=23% Similarity=0.222 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
.+.+|.+++..|.-|+++.|...|.+...-.|.. .....+..-++-.+++.|+ ..+|+..+-..+
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-------~~~~~l~~f~Al~L~~~gr---~~eAl~~~l~~l 102 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDD-------ELNAALRVFLALALYNLGR---PKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------cccHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 6799999999999999999999999877543320 0134566667788999995 578998876543
No 466
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.60 E-value=4.5e+02 Score=31.18 Aligned_cols=107 Identities=16% Similarity=0.264 Sum_probs=66.5
Q ss_pred CChHHHhHHHHHHhchhh--hhhcHHH----HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHH
Q 000194 1339 HQHEAAVGILTYAQKELD--VQLKESW----YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNN 1412 (1880)
Q Consensus 1339 ~~~D~~~Gi~~~~~~~~~--~~~~~~~----~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~ 1412 (1880)
.+..++..++......-+ ......| |-+||+|++|+..|+..+++ ++++ .+.-..+--|..-||+|.+-..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~--~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAP--AELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCC--cccchhHHHHHHHHHHHHHHHH
Confidence 566777777775432111 1122346 67899999999999988864 3443 2445667889999999988776
Q ss_pred HHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcC
Q 000194 1413 LCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLD 1454 (1880)
Q Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~ 1454 (1880)
.+..--+ .+-. ..+...-|-++||=.....+-+.+.
T Consensus 113 ~~~ka~k--~pL~----~RLlfhlahklndEk~~~~fh~~Lq 148 (557)
T KOG3785|consen 113 IAEKAPK--TPLC----IRLLFHLAHKLNDEKRILTFHSSLQ 148 (557)
T ss_pred HHhhCCC--ChHH----HHHHHHHHHHhCcHHHHHHHHHHHh
Confidence 6654311 1211 1245567778887655555544443
No 467
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=27.36 E-value=32 Score=35.85 Aligned_cols=111 Identities=15% Similarity=0.162 Sum_probs=72.3
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhc
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg 1368 (1880)
..+.....+.+.....+.|+|......+ .......+.|+.+|.+.+.++.+.-.++. ..+++........++.|
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~-----~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENK-----ENNPDLHTLLLELYIKYDPYEKLLEFLKT-SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTST-----C-SHHHHHHHHHHHHCTTTCCHHHHTTTS-SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhccc-----ccCHHHHHHHHHHHHhcCCchHHHHHccc-ccccCHHHHHHHHHhcc
Confidence 3455666667778888899988774321 23466778999999999887888777773 23356555566789999
Q ss_pred CHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhh
Q 000194 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKE 1416 (1880)
Q Consensus 1369 ~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1880)
.|+.|.-.|.+... ....++++..++.|+...+++..
T Consensus 85 l~~~a~~Ly~~~~~-----------~~~al~i~~~~~~~~~a~e~~~~ 121 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN-----------HDEALEILHKLKDYEEAIEYAKK 121 (143)
T ss_dssp SHHHHHHHHHCCTT-----------HTTCSSTSSSTHCSCCCTTTGGG
T ss_pred hHHHHHHHHHHccc-----------HHHHHHHHHHHccHHHHHHHHHh
Confidence 99999999975211 11223346666666655555544
No 468
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=27.11 E-value=1.1e+02 Score=22.82 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1694 IPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
.+-+-.-|+..+...| ..|.|..||.|
T Consensus 3 ~dRAR~IyeR~v~~hp-~~k~WikyAkF 29 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP-EVKNWIKYAKF 29 (32)
T ss_pred HHHHHHHHHHHHHhCC-CchHHHHHHHh
Confidence 3455677888888876 48999999987
No 469
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=26.88 E-value=1.5e+03 Score=29.55 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHHc-----chhhhHHHHHHHHHHHHHHhh---cchhHHHHHHHHHhH-hHhhhChhhHHHHHHHHH
Q 000194 254 VHSIHGSLLAVGELLRN-----TGEFMMSRYREVAEIVLRYLE---HRDRLVRLSITSLLP-RIAHFLRDRFVTNYLKIC 324 (1880)
Q Consensus 254 ~~~~~~al~~l~~ll~~-----~~~~~~~~~~~i~~~ll~~~~---~~~~~Vr~~~~~~i~-~la~~~~~~f~~~yl~~~ 324 (1880)
.+.+||-+.+|.+|+.- ..+.-.|.-.+.++.+..... .++...-.+ .-++. .||-..++-|.++|+..+
T Consensus 145 ~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~a-fPL~t~lLCvS~~e~F~~~W~~~~ 223 (552)
T PF14222_consen 145 SDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVA-FPLVTTLLCVSPKEFFLSNWLPSL 223 (552)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHHHhcCcHHHHHHHHHHHH
Confidence 46889999999888761 223333444444444432211 122222222 22222 244445566766554368
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHhh-c----hh---hhhhhhhHHHHHHHHhhcCCCCCC--Cc-hHHHHHHHHHHHh
Q 000194 325 MNHILTVLRIPAERDSGFIALGEMAGA-L----DG---ELFHYLPTITSHLREAIAPRRGKP--SL-EALACVGNIARAM 393 (1880)
Q Consensus 325 ~~~Ll~~L~~~~~r~~a~~alg~la~~-v----~~---~~~p~l~~i~~~l~~~l~~~~~~~--~~-~a~~~l~~la~~~ 393 (1880)
+..+...|+....|..++.||..+.-. + ++ .....++.|+..+ +..++... .. ..++.+..+...+
T Consensus 224 i~~~~~klKdk~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~l---fp~~kk~~i~~D~~~~~~lv~ii~~I 300 (552)
T PF14222_consen 224 IESLISKLKDKETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLL---FPKGKKGWIPRDPEPLNPLVQIIRFI 300 (552)
T ss_pred HHHHHhhcCChhhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHH---ccCCCCcccCCChhhhhhHHHHHHhH
Confidence 888888887667788999999886532 2 11 1122333333333 33322211 22 5667777777777
Q ss_pred CCCchHHH-HHHHHHHHhcC
Q 000194 394 GPVMEPHV-RGLLDIMFSAG 412 (1880)
Q Consensus 394 g~~~~~~l-~~ll~~l~~~~ 412 (1880)
|..-..|. +.++=+|++.+
T Consensus 301 ~~~~~df~~~~iI~~LL~~~ 320 (552)
T PF14222_consen 301 GYKHLDFAFRNIIFPLLNVS 320 (552)
T ss_pred hhhCcchHHHHHHHHHHccc
Confidence 76545554 66666666543
No 470
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.83 E-value=3.5e+02 Score=32.99 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHH
Q 000194 1670 LIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGY 1749 (1880)
Q Consensus 1670 l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y 1749 (1880)
.+|-||+|+.+|. .++++-.++.+++|++.||.|+=|..+-.+-+ ...|+.-|
T Consensus 262 NlA~c~lKl~~~~-------------~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e--------------~~~A~~df 314 (397)
T KOG0543|consen 262 NLAACYLKLKEYK-------------EAIESCNKVLELDPNNVKALYRRGQALLALGE--------------YDLARDDF 314 (397)
T ss_pred HHHHHHHhhhhHH-------------HHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc--------------HHHHHHHH
Confidence 3678888888774 56778888999999999999998888765432 12567777
Q ss_pred HHHHhhc
Q 000194 1750 FHSIACA 1756 (1880)
Q Consensus 1750 ~~si~~~ 1756 (1880)
-+++.+.
T Consensus 315 ~ka~k~~ 321 (397)
T KOG0543|consen 315 QKALKLE 321 (397)
T ss_pred HHHHHhC
Confidence 7777775
No 471
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=26.77 E-value=1.2e+03 Score=28.20 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=62.4
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHH
Q 000194 1536 NMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQV 1615 (1880)
Q Consensus 1536 ~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v 1615 (1880)
..|+-++.+.......|+.+.....--.+..-.....+-.+..+-..|+...|...|..+....... ...-.......+
T Consensus 231 ~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~ 309 (355)
T cd05804 231 LLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA-DDNKQPARDVGL 309 (355)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-CchhhhHHhhhH
Confidence 4455666666566666766554432221111122334568888888899999999988776532110 000000112455
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1616 MYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1616 ~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
.+..+-..|.+|+ ..+|+..|...+.
T Consensus 310 ~~l~A~~~~~~g~---~~~A~~~L~~al~ 335 (355)
T cd05804 310 PLAEALYAFAEGN---YATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 6778888999995 6889999887654
No 472
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=26.75 E-value=1.2e+03 Score=28.14 Aligned_cols=45 Identities=20% Similarity=0.090 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHH
Q 000194 1286 IDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAA 1344 (1880)
Q Consensus 1286 i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~ 1344 (1880)
|++..++..|..||....|...+|.+- .+...+..|.+ ||+.+.|
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~Ep----------~~~~qVplLL~----m~e~e~A 45 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLELEP----------RASKQVPLLLK----MGEDELA 45 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHcCC----------ChHHHHHHHhc----CCchHHH
Confidence 578899999999999999999998763 34455555554 4555444
No 473
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=26.64 E-value=3.6e+02 Score=28.65 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHH
Q 000194 1477 GTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALL 1556 (1880)
Q Consensus 1477 ~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL 1556 (1880)
..++.|+...++-...+.+.|-..++-++--=.+.|.|......-.+........-+..+.|++||-. .+-+....++
T Consensus 40 e~l~~Ai~~a~ri~~~~arrRQ~qyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~--~~~~al~e~~ 117 (157)
T PF04751_consen 40 EELRDAIMEARRITSHEARRRQLQYIGKLMREEDPEAIRAALDALKNKSQQETARFHRLERWRDRLIA--DDDSALTEFL 117 (157)
T ss_dssp HHHHHHHHHGGG--SHHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHh--CChHHHHHHH
Confidence 45788888877766788899988888766554455555443211000000112233456889999975 5556666665
Q ss_pred HHHHhhcCCccc---HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 000194 1557 AVRALVLPPTED---VETWLKFASLCRKSGRISQARSTLVKLL 1596 (1880)
Q Consensus 1557 ~~R~~vl~~~e~---~~~~lk~a~laRk~g~~~~a~~~L~~l~ 1596 (1880)
.-. |..| ...++.-|+-.++.+....+.+.|++.+
T Consensus 118 ~~~-----p~~D~Q~LRqLiR~a~ke~~~~k~~ka~R~Lfr~L 155 (157)
T PF04751_consen 118 AEY-----PDADRQQLRQLIRNARKEREANKPPKAYRELFRYL 155 (157)
T ss_dssp HHS-----TTS-HHHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHC-----ChhhHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 543 4444 4556666666666667777777776643
No 474
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=26.13 E-value=7.5e+02 Score=25.71 Aligned_cols=74 Identities=9% Similarity=0.036 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcC--------CCCcchHHHHHHHHHhh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRI--------PAERDSGFIALGEMAGA 351 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~--------~~~r~~a~~alg~la~~ 351 (1880)
+.+..+...++++++.|+..++.++..+...++..|....- ..++..|...+.. .+.|...+..+..-+.+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34555666678999999999999999999999888754332 4556666666632 11245666666666655
Q ss_pred chh
Q 000194 352 LDG 354 (1880)
Q Consensus 352 v~~ 354 (1880)
.++
T Consensus 118 f~~ 120 (139)
T cd03567 118 LPH 120 (139)
T ss_pred hcc
Confidence 543
No 475
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.13 E-value=5.1e+02 Score=26.61 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHhcCCchh-hHHHHHHHHHHHH
Q 000194 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVT-KREVAVSTLGQVV 758 (1880)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~d~~~~~-~r~~Al~~Lg~l~ 758 (1880)
...+..+.+++..+ ++.+...++..+..++..+|..|...+ ..++..+...+.+..... +|..++..+..-.
T Consensus 36 k~a~r~l~krl~~~-----n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNK-----NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 45667778888864 788888889999999999998775544 357777777776544333 7888888887777
Q ss_pred hhcCc
Q 000194 759 QSTGY 763 (1880)
Q Consensus 759 ~~~~~ 763 (1880)
.....
T Consensus 111 ~~f~~ 115 (133)
T smart00288 111 DAFKN 115 (133)
T ss_pred HHHcC
Confidence 66544
No 476
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=26.05 E-value=90 Score=23.89 Aligned_cols=27 Identities=22% Similarity=0.063 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHH
Q 000194 195 FVDAIWVALRDPTLAVRERAVEALRAC 221 (1880)
Q Consensus 195 i~~~i~~~l~D~~~~VR~aA~~al~~~ 221 (1880)
.++.+...|.++++.++..|+.||+.+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 566677778888999999999999875
No 477
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=26.02 E-value=3.2e+02 Score=28.99 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh--chHHHHHHHHH
Q 000194 124 DREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV--HVAEFVDAIWV 201 (1880)
Q Consensus 124 d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~--~l~~i~~~i~~ 201 (1880)
..+++..|+-++.++....+....+. +...++.+-.+........++.++..+--..|+.-.. .-..+++.+..
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~----~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~ 93 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEK----ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLP 93 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHH
Confidence 46788888888888864322122222 2222222223333335677777877777777765333 22356677777
Q ss_pred Hhc--CCchhHHHHHHHHHHHHH
Q 000194 202 ALR--DPTLAVRERAVEALRACL 222 (1880)
Q Consensus 202 ~l~--D~~~~VR~aA~~al~~~~ 222 (1880)
.+. .++..+..++++++....
T Consensus 94 ~~~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 94 LASRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp HHH-CTS-HHHHHHHHHHHHHHT
T ss_pred HHhcccCCHHHHHHHHHHHHHHH
Confidence 666 667888889999887654
No 478
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=25.89 E-value=95 Score=23.74 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=17.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000194 1069 LVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1880)
Q Consensus 1069 ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1880)
++++|+..+..++.+++..+..+|..|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3455556666556677777777766553
No 479
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.68 E-value=2.9e+02 Score=32.37 Aligned_cols=106 Identities=20% Similarity=0.182 Sum_probs=55.4
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCc
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py 680 (1880)
+..++..+++.++.||..|+..+-.+... |..+.-.-....++-+.++-.. ..+ .+.|+.++++++....- -+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l-~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEEL-RKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHH-HHHH
Confidence 34466778899999999999877766665 3332222122233334444332 122 45678888888765420 0111
Q ss_pred hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q 000194 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1880)
Q Consensus 681 ~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1880)
+..++..++..+.++ .+.....++..+..++
T Consensus 80 l~~~~k~l~~~~~~p-----~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDP-----QSPLADLICMLLSNLS 110 (353)
T ss_pred HHHHHHHHHHHhcCc-----ccchHHHHHHHHHHhc
Confidence 222455555555553 3334444444444444
No 480
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=24.93 E-value=9.8e+02 Score=26.56 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh-hhccchhhHHHHH
Q 000194 915 LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE-FRTHLPVILPCCI 993 (1880)
Q Consensus 915 ~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~-f~~yl~~l~p~ll 993 (1880)
.-..++..++.+...+|.+..|++.+++..+.+.-...+.+ ....+=.++++...++|.+ |-. ++|.-+
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~------~~~~~e~~lgaAi~amGpe~vL~----~lPLnl 85 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFS------FRKELEQVLGAAIRAMGPEQVLS----ILPLNL 85 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcc------hHHHHHHHHHHHHHHCCHHHHHH----HCCCCc
Confidence 34567788889999999998899999999988776654311 1225667777777777654 322 233222
Q ss_pred HhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcC-------CCcHHHHHHHHHHH--------Hhhcc
Q 000194 994 QVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKV-------DAPVDIRRAAIETL--------TRLIP 1058 (1880)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~-------~~~~~vr~~ai~~l--------~~l~~ 1058 (1880)
+. ..+....+.-.+.++.-.. -+..+.-+...++|..-.+... ..+.+.| ..+++ -.+|.
T Consensus 86 ~~--~~~~~~~raWLLPlLr~~i-~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak--~~~~l~~QlWslLP~FC~ 160 (198)
T PF08161_consen 86 DN--ADDSQPGRAWLLPLLRDHI-RNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAK--IYETLVQQLWSLLPGFCN 160 (198)
T ss_pred cC--CCcCCcccchhHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHH--HHHHHHHHHHHHhHHhcC
Confidence 11 1111122333344443221 2445566666677765544321 1122222 12222 22222
Q ss_pred c-ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000194 1059 R-VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095 (1880)
Q Consensus 1059 ~-~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l 1095 (1880)
. .|+......+-..|...|.+ .+++|..+...|-.|
T Consensus 161 ~P~D~~~~F~~~a~~L~~~L~~-~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 161 YPTDLAESFPSFAKLLGNALYD-QPDLRPIICQALRRL 197 (198)
T ss_pred CcccHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHH
Confidence 2 34444335556666677753 578888888877655
No 481
>PF14961 BROMI: Broad-minded protein
Probab=24.68 E-value=1.2e+03 Score=32.90 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000194 1030 LPALIRLFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF 1103 (1880)
Q Consensus 1030 lp~l~~~l~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f 1103 (1880)
+..|.+-++.+.|.++|..|++.|...-.+ +.-.++.+.+-..|...|.++++.+...++.....+....+..+
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 345666777778999999999999877665 44456888888888899999999999999988877766554443
No 482
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=24.66 E-value=1.1e+03 Score=27.07 Aligned_cols=179 Identities=14% Similarity=0.056 Sum_probs=102.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...+-.-+..+-+.|+++.|...+..+....|.. + -.+...+..+......|+ -.+|+..++++++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~------~a~~a~l~la~ayy~~~~---y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-P------YSQQVQLDLIYAYYKNAD---LPLAQAAIDRFIRLN 99 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-h------HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhC
Confidence 456667788899999999999999999988765531 0 113334566666677774 689999999988754
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcC-----------CC-CCCCCHHHHHHHHHHHHhhcccch--
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALP-----------PG-LDDESIPEIIAAYRNATQCATKWG-- 1712 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~-----------~~-~~~~~~~~i~~~y~~a~~~~~~~~-- 1712 (1880)
... +-...+++++|.=...+. .. .+.....+.++.|+..++..|+..
T Consensus 100 P~~-------------------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 100 PTH-------------------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred cCC-------------------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 321 123445555553211110 00 111224566788888898888764
Q ss_pred -HHHHHHHHHHHHHHHh-------hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHH
Q 000194 1713 -KAWHSWALFNTAVMSH-------YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEE 1784 (1880)
Q Consensus 1713 -k~w~~wA~~n~~~~~~-------~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~ 1784 (1880)
.+........+++.++ |.+++ .| ..|+.-|-.-|.-- .++++.-+.+.++..-..+.|...+
T Consensus 161 ~~A~~rl~~l~~~la~~e~~ia~~Y~~~~------~y-~AA~~r~~~v~~~Y---p~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 161 TDATKRLVFLKDRLAKYELSVAEYYTKRG------AY-VAVVNRVEQMLRDY---PDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC------ch-HHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHcCChHH
Confidence 3444444444444332 22222 23 23443333333221 2345666667777777777776654
No 483
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=24.24 E-value=1.3e+03 Score=27.64 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=0.0
Q ss_pred cHHHHH---HHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHH---------HHHhcCHHHHHHHHHHHHhccCCCchhH
Q 000194 1324 PVAVVE---ALIHINNQLHQHEAAVGILTYAQKELDVQLKESW---------YEKLQRWDDALKAYTNKASQASNPHIVL 1391 (1880)
Q Consensus 1324 ~~~~~e---~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~---------~e~lg~W~~Al~~y~~~~~~~~~~~~~~ 1391 (1880)
.++++| .|-++|.+=||.|-|.-|...--..++.+..... |..-|-+|.|-..|....++..-- .
T Consensus 65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa---~ 141 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA---E 141 (389)
T ss_pred CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh---H
Q ss_pred HhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccC
Q 000194 1392 EATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANG 1471 (1880)
Q Consensus 1392 ~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1471 (1880)
.....++.-|.+-.+|+.-.+.+...-+......+.+++.+..|-|-...-=+..+.....+.. ++...
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k-----------Alqa~ 210 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK-----------ALQAD 210 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH-----------HHhhC
Q ss_pred CCCCchHHHHHHHHHHhcC------------------hhhhHHHHHHHHHHhHhhhhHHHHHH
Q 000194 1472 DGSSNGTFFRAVLLVRRGK------------------VLESYERAYSNMVRVQQLSELEEVID 1516 (1880)
Q Consensus 1472 ~~~~~~~f~~a~~~i~~~~------------------~~esy~ray~~l~~lq~L~ELeE~i~ 1516 (1880)
..+...+..-.-+.+.+|+ ++|-..+-|..-.++....|......
T Consensus 211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
No 484
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=24.23 E-value=1.7e+03 Score=28.99 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
..+.++-=|++-.+.|++..|..++..+-.++. .+..+.--.+|++-..|+ ..+|.+.+..|+.+
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~----------~DRyiNsK~aKy~LRa~~---~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDL----------ADRYINSKCAKYLLRAGR---IEEAEKTASLFTRE 291 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh----------hhHHHHHHHHHHHHHCCC---HHHHHHHHHhhcCC
Confidence 377888889999999999999999888777653 234555667888888784 57888888877643
No 485
>PHA02593 62 clamp loader small subunit; Provisional
Probab=23.84 E-value=1.3e+02 Score=32.25 Aligned_cols=38 Identities=21% Similarity=0.539 Sum_probs=28.7
Q ss_pred HHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC
Q 000194 1435 NAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK 1490 (1880)
Q Consensus 1435 ~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~ 1490 (1880)
+.||+..|||.+++........ .+.++|.-+-.|..++
T Consensus 16 eiAW~skDw~~V~elad~fke~------------------~en~lF~ii~~it~~k 53 (191)
T PHA02593 16 EIAWRSKDWDAVQELADSFKEK------------------AENELFAIIDDITYGK 53 (191)
T ss_pred HHHHhccCHHHHHHHHHHhCcc------------------hhhHHHHHHHHHhcCC
Confidence 6899999999999998877642 3456777776776543
No 486
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=23.70 E-value=7e+02 Score=33.19 Aligned_cols=147 Identities=12% Similarity=-0.020 Sum_probs=79.6
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHhhcC---ccchhch---HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh
Q 000194 158 LDWLRGDRVEYRRFAAVLILKEMAENAS---TVFNVHV---AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR 231 (1880)
Q Consensus 158 ~~~l~~~~~~~~R~aA~~~l~~la~~~p---~~l~~~l---~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1880)
+.+|+..++...=.|+.=+|..++-+.+ ..+..-+ ...+|.|+..|+-.+..|-.+++-+|+.+...+.
T Consensus 524 l~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~r----- 598 (717)
T KOG1048|consen 524 LLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIR----- 598 (717)
T ss_pred HHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCch-----
Confidence 3344433343444454445555554422 2333222 3456788999998999998899999998765443
Q ss_pred hHHHHHHHHHHHHHhhccCCC-----ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHH-hhcchhHHHHHHHHH
Q 000194 232 WRVQWYYRMFEATQDGLGRNA-----PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRY-LEHRDRLVRLSITSL 304 (1880)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~~~-----~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~-~~~~~~~Vr~~~~~~ 304 (1880)
.+...-...++.+.+.|.+.. +++..-+.+..+.+++....+.-...++ +-.+.++.. +...++.+-+++...
T Consensus 599 nk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~v 678 (717)
T KOG1048|consen 599 NKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSV 678 (717)
T ss_pred hhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHH
Confidence 333333455566666554432 3788888888999888643322222111 112222221 123444555555555
Q ss_pred hHhHh
Q 000194 305 LPRIA 309 (1880)
Q Consensus 305 i~~la 309 (1880)
+..+=
T Consensus 679 L~~lW 683 (717)
T KOG1048|consen 679 LDVLW 683 (717)
T ss_pred HHHHH
Confidence 55553
No 487
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=23.34 E-value=1e+03 Score=26.30 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=97.2
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
..+.+.+-+-+..+-..|++..|...+..+....|.. .-.+...+..+...+..|+ -.+|+..++.++..
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s-------~~a~~A~l~la~a~y~~~~---y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS-------PYAPQAQLMLAYAYYKQGD---YEEAIAAYERFIKL 71 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS-------TTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 3456677788889999999999999999987654432 1246778888888888885 68999999999876
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhh-----hHhhcCCCCCCCCHHHHHHHHHHHHhhcccch---HHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGS-----WKRALPPGLDDESIPEIIAAYRNATQCATKWG---KAWHS 1717 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~-----w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~---k~w~~ 1717 (1880)
.... +....+++++|. |...+....+.....+....|+..++-.|+.. ++=..
T Consensus 72 yP~~-------------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 72 YPNS-------------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp -TT--------------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred CCCC-------------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 5321 112233333332 21110001123345677788888888888653 22222
Q ss_pred H-------HHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcH
Q 000194 1718 W-------ALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATE 1783 (1880)
Q Consensus 1718 w-------A~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~ 1783 (1880)
. |..-..+.+.|-+++ .| ..|+.-|-..|.-- .++...-+.+.++.......|...
T Consensus 133 l~~l~~~la~~e~~ia~~Y~~~~------~y-~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 133 LAELRNRLAEHELYIARFYYKRG------KY-KAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-------H-HHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc------cH-HHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChH
Confidence 2 222222333332222 22 23444444333321 234455566777777777777653
No 488
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=22.78 E-value=5.3e+02 Score=26.82 Aligned_cols=108 Identities=11% Similarity=0.135 Sum_probs=64.6
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccc
Q 000194 687 ALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVIT 766 (1880)
Q Consensus 687 ~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~ 766 (1880)
.++.+..++.....+......++..|.. + . ..-.+.+..+.+.|+...+..+-.-|+.-|..++.++|..+.
T Consensus 4 ~~IekATse~l~~~dw~~ileicD~In~-----~-~--~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh 75 (141)
T cd03565 4 QLIEKATDGSLQSEDWGLNMEICDIINE-----T-E--DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFH 75 (141)
T ss_pred HHHHHHcCcCCCCcCHHHHHHHHHHHhC-----C-C--CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHH
Confidence 3455555544333466665555555432 1 1 123567778888886433444556688889999999997542
Q ss_pred cCCcchHHHHH-HHHHhcC--CCCHHHHHHHHHHHHHHc
Q 000194 767 PYNEYPQLLGL-LLKMLNG--ELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 767 p~~~~p~ll~~-Ll~~L~~--~~~~~vr~~~l~~lg~lg 802 (1880)
...---++++. |.+++.. ..+..|+..++.++...+
T Consensus 76 ~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 76 VLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 21111356775 7777742 235688988888776654
No 489
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=22.75 E-value=1e+02 Score=37.48 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=28.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW 1418 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~ 1418 (1880)
.+|++|.|+.|+....-.-......+ ....-+||.++.||+|+.-...+....
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~---~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTD---STLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCc---hHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 35667766666654422110000111 122446777788888877777776554
No 490
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.65 E-value=6.3e+02 Score=30.95 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=13.8
Q ss_pred HHHHHhccchhhhhhhccchh
Q 000194 1292 GALAEKCRAFAKALHYKEMEF 1312 (1880)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~ 1312 (1880)
++.....+.|.+|+.|+|...
T Consensus 222 gk~~~A~~~Yerav~~l~~~~ 242 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRR 242 (397)
T ss_pred chHHHHHHHHHHHHHHhhccc
Confidence 344455567788888887654
No 491
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=22.60 E-value=5.4e+02 Score=31.14 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=43.8
Q ss_pred CChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc
Q 000194 573 ADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV 634 (1880)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v 634 (1880)
.+|++-..++.-++.+. + . ..+++++|..-++..++.|...|+.+++.++.+|+..+
T Consensus 24 enW~~IlDvCD~v~~~~--~--~-~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~ 80 (462)
T KOG2199|consen 24 ENWSLILDVCDKVGSDP--D--G-GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRF 80 (462)
T ss_pred ccHHHHHHHHHhhcCCC--c--c-cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHH
Confidence 45677677777775322 1 1 24689999999999999999999999999999997543
No 492
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=22.57 E-value=4.4e+02 Score=30.40 Aligned_cols=101 Identities=13% Similarity=0.177 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHHHHHhcCCchhhhHH--hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcC---cccccCCc---ch
Q 000194 701 NNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG---YVITPYNE---YP 772 (1880)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~--~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~---~~i~p~~~---~p 772 (1880)
...++-+.+..||.|++....+.-.|+- +++|..++.|.-+ +.-.|..|...+.++...-. ++..-+.. .-
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~ 187 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVA 187 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHH
Confidence 4557788899999999877767777764 7899999999866 45566677777777664321 12222222 23
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 773 ~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
.++..++..+..+.++.+=+-+++|.-.+.
T Consensus 188 ~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 188 MVLNKMVEQLVKQPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 344444444445557777777777766653
No 493
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.55 E-value=6.3e+02 Score=29.48 Aligned_cols=52 Identities=8% Similarity=-0.017 Sum_probs=28.3
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
|...|+|++|+..|+..+...++.....+....+-.|+..+|+++.-....+
T Consensus 190 y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 190 NYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566667777777666665444332223334444556666666655544443
No 494
>PF13041 PPR_2: PPR repeat family
Probab=21.92 E-value=1.6e+02 Score=23.97 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=24.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1880)
.|-+.|+|++|++.|++-.+..-.|+. .....+|+++
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~g~~P~~--~Ty~~li~~~ 48 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKRGIKPDS--YTYNILINGL 48 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHH
Confidence 478889999999999887654434432 2344555554
No 495
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=21.77 E-value=1.4e+02 Score=26.04 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=23.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhC
Q 000194 1232 AGFVSCWSQLNATSQKHLVQSLEMAFS 1258 (1880)
Q Consensus 1232 ~aF~s~w~~l~~~~~~~l~~~l~~~l~ 1258 (1880)
..|=..|..+++++|+.+++.++..++
T Consensus 39 VlFE~~W~~~~~~ek~~m~~~l~~~l~ 65 (65)
T TIGR03092 39 VLFEAIWKHANEQEKDEMLETLEQGVK 65 (65)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence 578889999999999999999987653
No 496
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=21.73 E-value=1.3e+03 Score=27.55 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
.+.+.+.+|..|++.+|++|.+.++=|-.+
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~y 82 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVY 82 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 468899999999999999999988776553
No 497
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=21.06 E-value=2.1e+03 Score=29.02 Aligned_cols=165 Identities=19% Similarity=0.076 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+-|-..+.----.|....|.+.+.......+. | ..+.+.+=-+|+....-. ..++++++-.+.+.....
T Consensus 357 ~e~w~~~als~saag~~s~Av~ll~~~~~~~~~--p------s~~s~~Lmasklc~e~l~--~~eegldYA~kai~~~~~ 426 (799)
T KOG4162|consen 357 HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ--P------SDISVLLMASKLCIERLK--LVEEGLDYAQKAISLLGG 426 (799)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHhhcccccC--C------CcchHHHHHHHHHHhchh--hhhhHHHHHHHHHHHhhh
Confidence 556666666666667777777777765544311 1 124455555566655433 357888888887765421
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCC-----HHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDES-----IPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~-----~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
....+.+++|+.+|-=.......-+..+ -...++.|++|++++++++.+-|+.|+.|.
T Consensus 427 -----------------~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A 489 (799)
T KOG4162|consen 427 -----------------QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYA 489 (799)
T ss_pred -----------------hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 2235778888888865443321111111 345568899999999999999999999887
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcC
Q 000194 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHG 1780 (1880)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g 1780 (1880)
+.- -+..|+.+--+++.++ ++++. ...++|.|.|.-.
T Consensus 490 ~~R--------------~l~sAl~~~~eaL~l~-----~~~~~-~~whLLALvlSa~ 526 (799)
T KOG4162|consen 490 EQR--------------QLTSALDYAREALALN-----RGDSA-KAWHLLALVLSAQ 526 (799)
T ss_pred HHH--------------hHHHHHHHHHHHHHhc-----CCccH-HHHHHHHHHHhhh
Confidence 632 3445566666666663 23322 3456666666543
No 498
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=21.04 E-value=1.2e+03 Score=30.49 Aligned_cols=150 Identities=19% Similarity=0.200 Sum_probs=77.9
Q ss_pred HHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcC---ChHHHhHHHHHHhc-hhhhh---hc
Q 000194 1288 IRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLH---QHEAAVGILTYAQK-ELDVQ---LK 1360 (1880)
Q Consensus 1288 ~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~---~~D~~~Gi~~~~~~-~~~~~---~~ 1360 (1880)
-++|+++|.+-. +|.-.|..|..-..- .....+..|..|-++=. +--+.+|=+..+.+ .++.. +.
T Consensus 695 WrllAe~Al~Kl----~l~tAE~AFVrc~dY----~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 695 WRLLAEYALFKL----ALDTAEHAFVRCGDY----AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred HHHHHHHHHHHH----hhhhHhhhhhhhccc----cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh
Confidence 357788776544 455556666432110 11233444444443322 22234444443322 11111 11
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHc
Q 000194 1361 ESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNM 1440 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l 1440 (1880)
...+.++|+|-..+..|...-...++. ..-.....+-.-...+-+|+.-.++-..- . +. .-.+++.+++
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~-~~e~A~r~ig~~fa~~~~We~A~~yY~~~-~--~~-------e~~~ecly~l 835 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDE-GKEDAFRNIGETFAEMMEWEEAAKYYSYC-G--DT-------ENQIECLYRL 835 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--ch-------HhHHHHHHHH
Confidence 224789999999998886532111111 00112223334456677787766553321 1 11 1347899999
Q ss_pred CChhhHHHHHhhcCCC
Q 000194 1441 GEWDQMAEYVSRLDDG 1456 (1880)
Q Consensus 1441 ~~Wd~~~~~~~~~~~~ 1456 (1880)
.+++.++.....++++
T Consensus 836 e~f~~LE~la~~Lpe~ 851 (1189)
T KOG2041|consen 836 ELFGELEVLARTLPED 851 (1189)
T ss_pred HhhhhHHHHHHhcCcc
Confidence 9999999999888764
No 499
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.02 E-value=9.6e+02 Score=25.00 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=63.6
Q ss_pred HHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHhcCC
Q 000194 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGA 742 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~d~~ 742 (1880)
-+++++...+ ..-...+..+.+++..+ ++.+...++..+..++..+|..|...+ ..++..+.+.+.+..
T Consensus 27 eicD~In~~~----~~~k~a~ral~krl~~~-----n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~ 97 (142)
T cd03569 27 EICDMIRSKD----VQPKYAMRALKKRLLSK-----NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTK 97 (142)
T ss_pred HHHHHHhCCC----CCHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccC
Confidence 3556665432 12356778888888875 788888889999999999998665443 356777777776555
Q ss_pred chhhHHHHHHHHHHHHhhcCc
Q 000194 743 AVTKREVAVSTLGQVVQSTGY 763 (1880)
Q Consensus 743 ~~~~r~~Al~~Lg~l~~~~~~ 763 (1880)
+..+|..++..+..-....+.
T Consensus 98 ~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 98 NEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 677888888877777666543
No 500
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=1.3e+03 Score=26.52 Aligned_cols=151 Identities=19% Similarity=0.123 Sum_probs=93.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccc
Q 000194 1574 KFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQ 1653 (1880)
Q Consensus 1574 k~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~ 1653 (1880)
+.+=.|--.|+..+|.+.+.++..--| +.++|..-++-.+=+.|. -.+|++.++.++++-. +
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp----------~S~RV~~lkam~lEa~~~---~~~A~e~y~~lL~ddp---t-- 118 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFP----------GSKRVGKLKAMLLEATGN---YKEAIEYYESLLEDDP---T-- 118 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCC----------CChhHHHHHHHHHHHhhc---hhhHHHHHHHHhccCc---c--
Confidence 555556677999999999998764323 347787777777777773 5789999998875421 0
Q ss_pred cccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccC
Q 000194 1654 SAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRG 1733 (1880)
Q Consensus 1654 ~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~ 1733 (1880)
+ ...+ -+|++--... | ..-++++...+-++..+....+||..|..+...
T Consensus 119 -------------~--~v~~-KRKlAilka~---G----K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-------- 167 (289)
T KOG3060|consen 119 -------------D--TVIR-KRKLAILKAQ---G----KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE-------- 167 (289)
T ss_pred -------------h--hHHH-HHHHHHHHHc---C----CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH--------
Confidence 0 0111 1334333221 2 123566666666777888899999998776542
Q ss_pred CCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHH
Q 000194 1734 LPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEV 1785 (1880)
Q Consensus 1734 ~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v 1785 (1880)
.-...|+=||=..+-.. ....-...|+--+.|..|+.+.+
T Consensus 168 ------~~f~kA~fClEE~ll~~------P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 168 ------GDFEKAAFCLEELLLIQ------PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred ------hHHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHhhHHHH
Confidence 12235566666665553 23444566777777777765443
Done!