Query 000194
Match_columns 1880
No_of_seqs 493 out of 2428
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 00:11:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 2E-32 7E-37 393.9 77.9 933 111-1117 8-1055(1230)
2 4fdd_A Transportin-1; heat rep 100.0 1.6E-32 5.3E-37 379.7 58.9 758 166-1133 26-820 (852)
3 1qgr_A Protein (importin beta 100.0 1E-30 3.5E-35 365.0 66.6 777 154-1097 3-871 (876)
4 2bpt_A Importin beta-1 subunit 100.0 1.7E-30 5.8E-35 362.1 64.3 758 110-1116 5-832 (861)
5 1u6g_C TIP120 protein, CAND1; 100.0 1.1E-30 3.7E-35 375.9 63.9 958 23-1115 85-1150(1230)
6 2bpt_A Importin beta-1 subunit 100.0 4.1E-30 1.4E-34 358.2 65.9 755 21-998 1-836 (861)
7 4fdd_A Transportin-1; heat rep 100.0 1.2E-30 4E-35 360.9 50.3 655 21-799 125-820 (852)
8 1qgr_A Protein (importin beta 100.0 2.4E-28 8.1E-33 341.1 64.0 787 26-1058 3-871 (876)
9 1b3u_A Protein (protein phosph 99.9 1.2E-22 3.9E-27 269.8 44.8 574 20-758 6-586 (588)
10 1b3u_A Protein (protein phosph 99.9 1E-21 3.5E-26 260.7 43.5 563 73-802 14-586 (588)
11 1wa5_C Importin alpha RE-expor 99.8 6E-14 2.1E-18 195.4 64.1 671 110-998 6-772 (960)
12 2x1g_F Cadmus; transport prote 99.7 1.5E-14 5.1E-19 202.7 53.3 437 614-1108 436-917 (971)
13 2x19_B Importin-13; nuclear tr 99.7 5.9E-14 2E-18 196.9 50.9 402 614-1080 422-876 (963)
14 1wa5_C Importin alpha RE-expor 99.7 2.8E-12 9.6E-17 178.7 64.6 735 70-998 7-869 (960)
15 2x1g_F Cadmus; transport prote 99.7 1.7E-12 5.9E-17 181.8 58.4 793 23-988 6-919 (971)
16 2x19_B Importin-13; nuclear tr 99.7 7.8E-12 2.7E-16 175.3 60.9 747 70-950 26-874 (963)
17 1ibr_B P95, importin beta-1 su 99.6 6E-14 2E-18 179.6 29.9 380 26-428 3-439 (462)
18 1ibr_B P95, importin beta-1 su 99.6 6.8E-13 2.3E-17 169.8 38.8 427 605-1116 7-458 (462)
19 3m1i_C Exportin-1; heat repeat 99.6 1.2E-11 4.2E-16 173.7 50.5 420 614-1100 428-881 (1049)
20 3m1i_C Exportin-1; heat repeat 99.5 6.4E-10 2.2E-14 156.3 56.8 757 19-998 11-860 (1049)
21 3ibv_A Exportin-T; karyopherin 99.4 1.9E-09 6.5E-14 147.4 51.4 436 615-1106 414-933 (980)
22 2vgl_B AP-2 complex subunit be 99.4 6.6E-11 2.3E-15 154.9 34.2 428 72-585 89-527 (591)
23 2vgl_B AP-2 complex subunit be 99.4 2.1E-10 7.1E-15 150.2 37.0 498 157-757 18-530 (591)
24 1w63_A Adapter-related protein 99.4 3.2E-10 1.1E-14 148.8 37.2 429 73-585 74-572 (618)
25 3now_A UNC-45 protein, SD10334 99.4 4.1E-08 1.4E-12 128.3 54.1 501 515-1097 217-782 (810)
26 3now_A UNC-45 protein, SD10334 99.3 9.3E-08 3.2E-12 125.0 55.7 715 23-808 5-790 (810)
27 2jdq_A Importin alpha-1 subuni 99.3 3.7E-11 1.3E-15 152.9 23.3 356 509-931 27-393 (450)
28 2qk2_A LP04448P; mini spindles 99.3 4E-11 1.4E-15 137.9 21.0 190 163-363 25-219 (242)
29 4hat_C Exportin-1; heat repeat 99.3 2.7E-09 9.1E-14 145.9 42.2 394 655-1116 357-804 (1023)
30 2jdq_A Importin alpha-1 subuni 99.3 1.2E-10 3.9E-15 148.4 25.6 357 26-393 22-392 (450)
31 1w63_A Adapter-related protein 99.3 5.8E-09 2E-13 136.8 40.4 472 157-803 75-577 (618)
32 2qk1_A Protein STU2; STU2P, XM 99.3 5.2E-11 1.8E-15 136.3 17.8 196 163-363 26-234 (249)
33 3ibv_A Exportin-T; karyopherin 99.3 4.7E-07 1.6E-11 123.9 59.5 373 572-999 454-899 (980)
34 1wa5_B Importin alpha subunit; 99.3 7.2E-11 2.4E-15 153.4 20.5 356 508-931 93-460 (530)
35 4hat_C Exportin-1; heat repeat 99.3 1.9E-07 6.3E-12 127.8 54.6 775 108-999 15-911 (1023)
36 4b8j_A Importin subunit alpha- 99.2 2.4E-10 8.4E-15 148.4 24.9 360 23-393 73-445 (528)
37 2qk2_A LP04448P; mini spindles 99.2 7.1E-11 2.4E-15 135.9 17.2 195 74-321 20-216 (242)
38 4b8j_A Importin subunit alpha- 99.2 8.5E-11 2.9E-15 152.8 18.9 357 508-931 80-446 (528)
39 2vgl_A Adaptor protein complex 99.2 8E-08 2.7E-12 125.4 45.4 486 24-585 11-584 (621)
40 1wa5_B Importin alpha subunit; 99.2 5.3E-10 1.8E-14 145.2 24.6 357 24-393 87-459 (530)
41 2z6g_A B-catenin; FULL-length, 99.2 6.5E-09 2.2E-13 140.1 32.0 490 508-1103 156-669 (780)
42 2z6h_A Catenin beta-1, beta-ca 99.1 6.6E-09 2.3E-13 138.0 29.9 489 194-804 14-528 (644)
43 2z6g_A B-catenin; FULL-length, 99.1 7.8E-09 2.7E-13 139.4 28.2 457 570-1096 124-621 (780)
44 3gjx_A Exportin-1; transport, 99.1 4.4E-07 1.5E-11 123.2 43.6 373 677-1116 411-830 (1073)
45 1jdh_A Beta-catenin; beta-cate 99.0 4.5E-08 1.5E-12 127.3 31.2 483 507-1095 22-528 (529)
46 2z6h_A Catenin beta-1, beta-ca 99.0 3.5E-08 1.2E-12 131.1 28.8 432 600-1096 15-485 (644)
47 3gjx_A Exportin-1; transport, 99.0 9.5E-05 3.3E-09 100.5 61.4 383 611-1101 491-908 (1073)
48 2vgl_A Adaptor protein complex 99.0 4.3E-07 1.5E-11 118.5 37.2 507 168-802 54-588 (621)
49 1jdh_A Beta-catenin; beta-cate 98.9 1.5E-07 5.1E-12 122.3 31.0 308 71-391 19-339 (529)
50 2qk1_A Protein STU2; STU2P, XM 98.9 1.4E-08 4.7E-13 116.1 17.8 189 122-315 27-225 (249)
51 1oyz_A Hypothetical protein YI 98.9 1.8E-07 6.1E-12 110.1 27.4 189 569-802 31-220 (280)
52 3tpo_A Importin subunit alpha- 98.9 6.8E-08 2.3E-12 124.8 25.4 356 25-391 77-449 (529)
53 3ul1_B Importin subunit alpha- 98.9 4.1E-08 1.4E-12 126.0 22.6 355 26-392 59-431 (510)
54 3ul1_B Importin subunit alpha- 98.8 6.4E-07 2.2E-11 114.9 28.7 397 196-756 59-475 (510)
55 1oyz_A Hypothetical protein YI 98.8 3.3E-07 1.1E-11 107.9 23.4 238 481-799 39-278 (280)
56 2iw3_A Elongation factor 3A; a 98.7 4.8E-07 1.6E-11 119.8 23.6 306 22-350 12-324 (986)
57 3tpo_A Importin subunit alpha- 98.7 2.3E-06 7.8E-11 110.4 29.0 316 72-392 79-407 (529)
58 3ltj_A Alpharep-4; protein eng 98.7 5.3E-07 1.8E-11 100.0 19.8 192 494-758 6-197 (201)
59 2iw3_A Elongation factor 3A; a 98.5 9.3E-07 3.2E-11 117.1 19.3 278 125-419 28-313 (986)
60 4hxt_A De novo protein OR329; 98.5 2E-06 6.8E-11 99.2 19.3 237 72-316 5-247 (252)
61 4hxt_A De novo protein OR329; 98.5 3.2E-06 1.1E-10 97.4 20.3 240 154-399 4-249 (252)
62 3ltj_A Alpharep-4; protein eng 98.5 4.1E-06 1.4E-10 92.8 19.4 176 569-802 22-197 (201)
63 3ltm_A Alpha-REP4; protein eng 98.5 3.1E-06 1.1E-10 94.6 18.2 176 569-802 27-202 (211)
64 4db8_A Armadillo-repeat protei 98.4 2.2E-06 7.6E-11 98.9 16.6 230 111-350 14-251 (252)
65 3ltm_A Alpha-REP4; protein eng 98.4 4.8E-06 1.6E-10 93.1 18.6 185 505-762 22-206 (211)
66 3oc3_A Helicase MOT1, MOT1; re 98.4 5.2E-07 1.8E-11 106.3 10.0 227 25-309 175-403 (800)
67 4db8_A Armadillo-repeat protei 98.4 2.1E-06 7.1E-11 99.1 15.3 231 72-310 15-251 (252)
68 3a6p_A Exportin-5; exportin-5, 98.4 0.0057 2E-07 86.1 52.6 230 105-352 7-278 (1204)
69 3a6p_A Exportin-5; exportin-5, 98.3 0.00042 1.4E-08 97.6 36.7 485 573-1116 25-632 (1204)
70 4db6_A Armadillo repeat protei 98.3 3.6E-06 1.2E-10 94.0 12.3 194 600-802 13-208 (210)
71 3l6x_A Catenin delta-1; cateni 98.2 0.00018 6.2E-09 91.0 28.2 346 17-373 41-456 (584)
72 2db0_A 253AA long hypothetical 98.2 0.00014 4.8E-09 73.3 21.0 182 599-806 32-213 (253)
73 3opb_A SWI5-dependent HO expre 98.2 0.029 1E-06 72.1 47.6 225 571-802 467-727 (778)
74 4db6_A Armadillo repeat protei 98.2 1.5E-05 5E-10 89.0 15.8 193 111-310 13-209 (210)
75 1xm9_A Plakophilin 1; armadill 98.2 0.00014 4.9E-09 91.4 25.8 399 601-1059 4-450 (457)
76 1xm9_A Plakophilin 1; armadill 98.2 0.00011 3.6E-09 92.6 24.3 314 26-350 4-406 (457)
77 1w3b_A UDP-N-acetylglucosamine 98.1 0.0016 5.4E-08 80.1 34.0 357 1291-1795 5-368 (388)
78 1xqr_A HSPBP1 protein; armadil 98.1 6.5E-05 2.2E-09 87.5 17.8 195 599-801 81-285 (296)
79 3opb_A SWI5-dependent HO expre 98.0 0.016 5.4E-07 74.5 40.0 136 600-741 607-759 (778)
80 4ady_A RPN2, 26S proteasome re 98.0 0.00018 6.1E-09 94.1 21.6 248 83-375 451-701 (963)
81 4ady_A RPN2, 26S proteasome re 98.0 0.0016 5.5E-08 85.3 30.0 292 504-911 394-700 (963)
82 2db0_A 253AA long hypothetical 97.9 0.0015 5.3E-08 66.0 22.2 216 68-310 31-246 (253)
83 2xpi_A Anaphase-promoting comp 97.9 0.0077 2.6E-07 78.8 36.2 167 1567-1794 405-578 (597)
84 1xqr_A HSPBP1 protein; armadil 97.9 0.00041 1.4E-08 80.8 20.6 179 84-270 55-239 (296)
85 2xpi_A Anaphase-promoting comp 97.9 0.013 4.5E-07 76.5 37.6 166 1568-1794 338-503 (597)
86 3l6x_A Catenin delta-1; cateni 97.9 0.00066 2.3E-08 85.9 22.8 354 507-927 53-475 (584)
87 3nmz_A APC variant protein; pr 97.8 0.0012 4.1E-08 81.7 24.2 359 19-392 27-451 (458)
88 3ieg_A DNAJ homolog subfamily 97.8 0.025 8.6E-07 67.8 36.1 324 1290-1724 8-352 (359)
89 1w3b_A UDP-N-acetylglucosamine 97.8 0.012 4E-07 72.2 32.4 334 1290-1722 38-383 (388)
90 1xi4_A Clathrin heavy chain; a 97.8 0.044 1.5E-06 74.3 38.6 163 1694-1878 1296-1469(1630)
91 2of3_A ZYG-9; multifunctional 97.7 0.00094 3.2E-08 75.0 18.2 175 123-316 58-242 (266)
92 2y4t_A DNAJ homolog subfamily 97.6 0.087 3E-06 65.7 37.5 327 1289-1725 30-376 (450)
93 3fp2_A TPR repeat-containing p 97.6 0.027 9.1E-07 72.3 33.0 174 1569-1797 276-459 (537)
94 2y4t_A DNAJ homolog subfamily 97.6 0.047 1.6E-06 68.1 33.9 139 1567-1756 209-359 (450)
95 2of3_A ZYG-9; multifunctional 97.5 0.0013 4.4E-08 73.9 16.0 186 165-362 58-248 (266)
96 4ffb_C Protein STU2; tubulin f 97.5 0.00095 3.3E-08 77.7 15.3 193 75-314 15-216 (278)
97 3hym_B Cell division cycle pro 97.5 0.013 4.3E-07 69.6 25.7 124 1568-1723 192-315 (330)
98 3fp2_A TPR repeat-containing p 97.5 0.033 1.1E-06 71.5 31.6 140 1568-1756 343-492 (537)
99 2gw1_A Mitochondrial precursor 97.5 0.09 3.1E-06 66.8 35.4 141 1567-1756 336-479 (514)
100 3ieg_A DNAJ homolog subfamily 97.5 0.18 6.2E-06 60.1 36.1 139 1567-1756 186-336 (359)
101 1vsy_5 Proteasome activator BL 97.4 0.27 9.2E-06 66.5 40.1 187 600-800 761-963 (997)
102 3nmw_A APC variant protein; AR 97.4 0.0063 2.1E-07 72.8 21.9 229 83-316 98-340 (354)
103 3hym_B Cell division cycle pro 97.4 0.077 2.6E-06 62.7 30.5 266 1363-1756 31-300 (330)
104 3nmz_A APC variant protein; pr 97.3 0.014 4.8E-07 72.1 23.7 228 84-315 215-455 (458)
105 3nmw_A APC variant protein; AR 97.3 0.0087 3E-07 71.6 20.9 222 125-354 98-338 (354)
106 2gw1_A Mitochondrial precursor 97.2 0.054 1.8E-06 68.9 29.1 120 1567-1721 370-492 (514)
107 4ffb_C Protein STU2; tubulin f 97.2 0.0012 4.1E-08 76.9 11.7 187 163-355 19-217 (278)
108 3b2a_A TON_1937, putative unch 97.1 0.02 6.9E-07 61.1 18.2 186 22-222 31-217 (265)
109 3oc3_A Helicase MOT1, MOT1; re 97.0 0.0071 2.4E-07 72.1 14.7 220 507-799 179-400 (800)
110 3vtx_A MAMA; tetratricopeptide 96.9 0.055 1.9E-06 57.9 21.2 170 1567-1797 3-172 (184)
111 1b89_A Protein (clathrin heavy 96.9 0.0099 3.4E-07 71.9 15.6 162 1695-1878 224-396 (449)
112 3b2a_A TON_1937, putative unch 96.8 0.037 1.3E-06 59.1 17.4 183 599-801 33-216 (265)
113 1te4_A Conserved protein MTH18 96.6 0.00084 2.9E-08 68.0 2.8 116 505-668 15-130 (131)
114 1fch_A Peroxisomal targeting s 96.5 0.27 9.2E-06 59.1 25.6 117 1568-1725 216-343 (368)
115 2pl2_A Hypothetical conserved 96.4 0.13 4.4E-06 56.9 19.6 168 1568-1797 4-182 (217)
116 4gyw_A UDP-N-acetylglucosamine 96.3 0.048 1.6E-06 72.0 18.0 163 1567-1790 7-169 (723)
117 3uq3_A Heat shock protein STI1 96.3 1.1 3.7E-05 50.2 27.4 112 1568-1720 138-255 (258)
118 3l9t_A Putative uncharacterize 96.3 0.091 3.1E-06 56.9 16.4 135 69-222 71-206 (240)
119 3cv0_A Peroxisome targeting si 96.2 0.33 1.1E-05 57.0 23.5 116 1568-1724 171-298 (327)
120 3grl_A General vesicular trans 96.2 0.75 2.6E-05 57.7 26.5 326 10-349 7-393 (651)
121 1te4_A Conserved protein MTH18 96.2 0.0067 2.3E-07 61.3 6.7 111 569-714 20-130 (131)
122 3tjz_B Coatomer subunit gamma; 96.2 0.14 4.7E-06 60.5 18.7 275 43-356 44-322 (355)
123 3u4t_A TPR repeat-containing p 96.1 0.43 1.5E-05 54.3 23.2 126 1568-1723 141-266 (272)
124 4eqf_A PEX5-related protein; a 96.1 0.43 1.5E-05 57.3 24.2 115 1568-1723 212-338 (365)
125 3sf4_A G-protein-signaling mod 95.9 1.7 5.8E-05 52.6 28.7 128 1569-1725 227-360 (406)
126 2ond_A Cleavage stimulation fa 95.9 0.69 2.4E-05 54.1 23.6 205 1567-1836 48-273 (308)
127 3tjz_B Coatomer subunit gamma; 95.7 0.035 1.2E-06 65.5 11.1 240 506-798 108-348 (355)
128 1xi4_A Clathrin heavy chain; a 95.7 1.5 5E-05 60.0 27.2 301 1274-1630 1041-1346(1630)
129 4a1s_A PINS, partner of inscut 95.7 3.7 0.00013 49.8 30.3 121 1569-1718 263-383 (411)
130 2h6f_A Protein farnesyltransfe 95.7 0.88 3E-05 55.0 23.7 151 1568-1778 96-246 (382)
131 3mkr_A Coatomer subunit epsilo 95.6 2 6.7E-05 49.7 25.9 250 1292-1644 6-263 (291)
132 1vsy_5 Proteasome activator BL 95.6 0.035 1.2E-06 75.1 11.9 153 66-223 798-966 (997)
133 2pl2_A Hypothetical conserved 95.5 0.47 1.6E-05 52.3 19.3 167 1559-1787 29-206 (217)
134 3u4t_A TPR repeat-containing p 95.5 0.78 2.7E-05 52.1 21.9 172 1569-1798 3-174 (272)
135 2q7f_A YRRB protein; TPR, prot 95.5 0.5 1.7E-05 52.5 19.6 169 1567-1796 55-223 (243)
136 2ho1_A Type 4 fimbrial biogene 95.5 1.3 4.3E-05 49.6 23.1 168 1569-1797 37-206 (252)
137 3vtx_A MAMA; tetratricopeptide 95.3 0.27 9.2E-06 52.3 15.9 135 1567-1756 37-171 (184)
138 3grl_A General vesicular trans 95.3 1.7 6E-05 54.4 24.5 198 598-801 165-392 (651)
139 3u0r_A Apoptosis inhibitor 5; 95.3 0.35 1.2E-05 57.7 17.3 118 479-629 42-164 (507)
140 3ro2_A PINS homolog, G-protein 95.2 1.8 6E-05 50.5 24.4 114 1568-1710 222-335 (338)
141 4gco_A Protein STI-1; structur 95.2 0.21 7.2E-06 49.6 13.5 120 1559-1720 4-123 (126)
142 4i17_A Hypothetical protein; T 95.2 0.47 1.6E-05 52.5 18.1 156 1567-1756 40-210 (228)
143 1lrv_A LRV, leucine-rich repea 95.2 0.005 1.7E-07 68.9 1.2 16 784-799 227-242 (244)
144 2ho1_A Type 4 fimbrial biogene 95.0 1.2 4.2E-05 49.8 21.1 172 1567-1797 69-240 (252)
145 2vq2_A PILW, putative fimbrial 95.0 2.2 7.6E-05 46.3 22.8 168 1567-1794 6-175 (225)
146 4abn_A Tetratricopeptide repea 95.0 0.8 2.7E-05 57.4 21.2 188 1565-1797 98-289 (474)
147 3qky_A Outer membrane assembly 94.9 1 3.5E-05 51.0 20.2 174 1567-1779 13-198 (261)
148 2ond_A Cleavage stimulation fa 94.8 1.9 6.5E-05 50.3 22.7 176 1566-1797 96-272 (308)
149 3mkr_A Coatomer subunit epsilo 94.8 7.5 0.00026 44.7 30.7 119 1567-1724 128-246 (291)
150 4g1t_A Interferon-induced prot 94.7 4.2 0.00014 50.5 26.8 116 1288-1406 54-187 (472)
151 3as5_A MAMA; tetratricopeptide 94.7 1 3.4E-05 47.2 18.1 165 1568-1793 7-171 (186)
152 3uq3_A Heat shock protein STI1 94.6 1.4 4.7E-05 49.3 20.3 108 1568-1710 4-111 (258)
153 3as5_A MAMA; tetratricopeptide 94.6 0.53 1.8E-05 49.4 15.6 150 1290-1452 13-169 (186)
154 4i17_A Hypothetical protein; T 94.5 2 6.7E-05 47.3 20.8 161 1568-1780 6-167 (228)
155 2ooe_A Cleavage stimulation fa 94.5 15 0.0005 46.4 36.9 205 1567-1836 270-495 (530)
156 3sf4_A G-protein-signaling mod 94.5 7.1 0.00024 46.9 27.7 112 1290-1406 14-142 (406)
157 2q7f_A YRRB protein; TPR, prot 94.4 1.7 5.9E-05 48.0 20.2 169 1568-1797 22-190 (243)
158 1elw_A TPR1-domain of HOP; HOP 94.4 0.78 2.7E-05 43.7 15.0 114 1568-1722 3-116 (118)
159 2vq2_A PILW, putative fimbrial 94.2 2.7 9.4E-05 45.5 21.1 165 1567-1789 40-205 (225)
160 2lni_A Stress-induced-phosphop 94.1 1.1 3.9E-05 43.8 16.0 117 1567-1724 14-130 (133)
161 2vyi_A SGTA protein; chaperone 94.1 1 3.6E-05 43.8 15.7 116 1568-1724 11-126 (131)
162 4atg_A TAF6; transcription, TF 94.0 1.4 4.7E-05 46.7 16.2 135 576-715 23-160 (196)
163 4gyw_A UDP-N-acetylglucosamine 93.9 0.58 2E-05 61.6 16.8 150 1289-1451 13-169 (723)
164 4ga2_A E3 SUMO-protein ligase 93.9 0.15 5.2E-06 52.4 9.0 108 1576-1724 4-111 (150)
165 2h6f_A Protein farnesyltransfe 93.9 2.4 8.1E-05 51.2 20.9 141 1567-1756 129-270 (382)
166 1na0_A Designed protein CTPR3; 93.8 1.4 4.8E-05 42.4 15.8 116 1567-1723 7-122 (125)
167 3urz_A Uncharacterized protein 93.6 1.2 4.1E-05 48.4 16.4 116 1568-1724 3-134 (208)
168 4eqf_A PEX5-related protein; a 93.6 1.4 5E-05 52.5 18.5 199 1567-1816 97-298 (365)
169 4gco_A Protein STI-1; structur 93.5 0.37 1.3E-05 47.8 10.7 103 1290-1401 18-125 (126)
170 3sz7_A HSC70 cochaperone (SGT) 93.4 0.58 2E-05 48.6 12.8 114 1567-1721 9-122 (164)
171 3tt9_A Plakophilin-2; cell adh 93.4 0.28 9.4E-06 54.3 10.4 192 601-801 10-227 (233)
172 1fch_A Peroxisomal targeting s 93.3 3.9 0.00013 48.6 21.8 184 1567-1797 96-282 (368)
173 2dba_A Smooth muscle cell asso 93.3 1.1 3.7E-05 45.0 14.3 117 1567-1721 26-142 (148)
174 4atg_A TAF6; transcription, TF 92.8 2.7 9.3E-05 44.4 16.3 101 701-803 59-162 (196)
175 3upv_A Heat shock protein STI1 92.8 1.4 5E-05 43.0 14.0 115 1568-1723 3-123 (126)
176 3ro2_A PINS homolog, G-protein 92.7 10 0.00036 43.6 24.1 157 1290-1451 10-207 (338)
177 4gcn_A Protein STI-1; structur 92.6 1.2 4.2E-05 43.9 13.2 108 1569-1710 8-115 (127)
178 3cv0_A Peroxisome targeting si 92.6 7.6 0.00026 44.9 22.5 178 1567-1797 53-237 (327)
179 1elr_A TPR2A-domain of HOP; HO 92.4 2.6 8.8E-05 40.9 15.4 121 1568-1723 3-123 (131)
180 4abn_A Tetratricopeptide repea 92.3 1.6 5.6E-05 54.6 16.8 142 1567-1756 135-288 (474)
181 4gcn_A Protein STI-1; structur 92.0 0.51 1.8E-05 46.7 9.4 93 1289-1387 12-116 (127)
182 1vsy_4 Proteasome activator BL 91.8 19 0.00066 47.2 26.2 262 107-372 332-667 (799)
183 1a17_A Serine/threonine protei 91.7 6.7 0.00023 39.9 18.4 113 1568-1721 12-124 (166)
184 1xnf_A Lipoprotein NLPI; TPR, 91.7 2.8 9.6E-05 47.3 16.7 166 1580-1803 16-181 (275)
185 4ga2_A E3 SUMO-protein ligase 91.6 1.8 6.1E-05 44.2 13.3 115 1566-1721 28-143 (150)
186 2vyi_A SGTA protein; chaperone 91.5 1 3.4E-05 43.9 11.1 108 1290-1406 17-129 (131)
187 3u0r_A Apoptosis inhibitor 5; 91.4 30 0.001 41.6 26.7 121 71-206 67-189 (507)
188 3q49_B STIP1 homology and U bo 91.4 4.5 0.00015 39.8 16.0 117 1567-1724 7-128 (137)
189 1upk_A MO25 protein; transfera 91.3 3.4 0.00012 47.2 15.8 193 598-803 77-283 (341)
190 4a1s_A PINS, partner of inscut 91.3 5 0.00017 48.6 19.5 195 1568-1793 47-250 (411)
191 3ulq_A Response regulator aspa 91.2 22 0.00075 42.4 25.0 178 1575-1794 109-292 (383)
192 3nf1_A KLC 1, kinesin light ch 91.2 13 0.00044 42.4 22.2 126 1326-1451 28-177 (311)
193 3qky_A Outer membrane assembly 91.0 1.4 4.8E-05 49.8 13.1 124 1290-1416 20-173 (261)
194 2fo7_A Synthetic consensus TPR 91.0 1.8 6.1E-05 42.2 12.3 113 1290-1411 6-123 (136)
195 3nf1_A KLC 1, kinesin light ch 90.8 1.3 4.5E-05 51.2 12.9 161 1290-1451 32-219 (311)
196 1xnf_A Lipoprotein NLPI; TPR, 90.8 6.2 0.00021 44.3 18.5 168 1567-1797 41-208 (275)
197 2fo7_A Synthetic consensus TPR 90.7 7.3 0.00025 37.5 16.7 131 1570-1755 2-132 (136)
198 3gyz_A Chaperone protein IPGC; 90.5 1.6 5.5E-05 44.7 11.5 105 1567-1712 34-138 (151)
199 2qfc_A PLCR protein; TPR, HTH, 90.4 14 0.0005 42.1 21.3 203 1568-1814 74-288 (293)
200 3l9t_A Putative uncharacterize 90.3 1.8 6E-05 47.0 11.7 143 501-679 70-215 (240)
201 1a17_A Serine/threonine protei 90.3 2.3 7.7E-05 43.6 12.9 116 1290-1412 18-138 (166)
202 2xcb_A PCRH, regulatory protei 90.3 2.3 8E-05 42.7 12.6 107 1567-1714 16-122 (142)
203 2pzi_A Probable serine/threoni 90.3 1.3 4.5E-05 58.3 13.4 134 1567-1756 431-564 (681)
204 2vgx_A Chaperone SYCD; alterna 90.1 3.3 0.00011 42.1 13.6 106 1567-1713 19-124 (148)
205 2fbn_A 70 kDa peptidylprolyl i 90.1 5.1 0.00017 42.8 16.0 126 1569-1725 38-169 (198)
206 2xev_A YBGF; tetratricopeptide 90.0 6.2 0.00021 38.2 15.3 114 1571-1719 4-117 (129)
207 3qou_A Protein YBBN; thioredox 90.0 3.4 0.00012 47.5 15.3 167 1567-1793 115-282 (287)
208 1w9c_A CRM1 protein, exportin 89.9 31 0.0011 39.4 23.0 168 170-337 46-229 (321)
209 2lni_A Stress-induced-phosphop 89.9 1.7 5.8E-05 42.5 11.0 107 1290-1405 21-132 (133)
210 2vsy_A XCC0866; transferase, g 89.9 5.2 0.00018 51.2 18.5 139 1567-1757 21-159 (568)
211 3ulq_A Response regulator aspa 89.8 2.7 9.3E-05 50.6 14.9 160 1291-1451 109-288 (383)
212 1hxi_A PEX5, peroxisome target 89.5 2.1 7.1E-05 41.8 11.0 105 1568-1713 16-120 (121)
213 3edt_B KLC 2, kinesin light ch 89.5 2.9 0.0001 47.2 14.2 126 1290-1415 48-193 (283)
214 3sz7_A HSC70 cochaperone (SGT) 89.0 2.2 7.4E-05 44.1 11.5 110 1290-1406 16-130 (164)
215 1qqe_A Vesicular transport pro 89.0 6.3 0.00021 45.3 16.6 190 1568-1802 76-273 (292)
216 3edt_B KLC 2, kinesin light ch 88.9 12 0.00041 41.9 18.9 149 1551-1724 23-181 (283)
217 3upv_A Heat shock protein STI1 88.8 2.3 7.8E-05 41.5 10.9 88 1290-1383 9-101 (126)
218 2yhc_A BAMD, UPF0169 lipoprote 88.7 15 0.00053 39.9 19.0 191 1569-1791 4-209 (225)
219 3tt9_A Plakophilin-2; cell adh 88.7 9.6 0.00033 41.9 16.7 106 116-223 14-124 (233)
220 1upk_A MO25 protein; transfera 88.7 37 0.0013 38.8 21.5 191 113-310 81-283 (341)
221 3fga_B Serine/threonine-protei 88.0 16 0.00053 43.3 18.5 248 58-316 117-372 (403)
222 2hr2_A Hypothetical protein; a 87.9 8.1 0.00028 39.5 14.2 124 1617-1773 15-149 (159)
223 2yhc_A BAMD, UPF0169 lipoprote 87.9 14 0.00047 40.3 17.8 117 1612-1756 3-126 (225)
224 4e6h_A MRNA 3'-END-processing 87.7 38 0.0013 43.8 24.1 227 1567-1838 341-575 (679)
225 1p5q_A FKBP52, FK506-binding p 87.6 6.6 0.00023 46.3 15.9 127 1568-1725 146-277 (336)
226 3q15_A PSP28, response regulat 87.6 4.5 0.00015 48.6 14.7 160 1291-1451 107-285 (378)
227 1elr_A TPR2A-domain of HOP; HO 87.4 2.9 9.9E-05 40.5 10.7 107 1290-1406 9-127 (131)
228 1lrv_A LRV, leucine-rich repea 87.4 0.44 1.5E-05 53.1 4.9 64 569-666 178-241 (244)
229 2vsy_A XCC0866; transferase, g 87.4 4.9 0.00017 51.5 15.7 151 1582-1793 2-155 (568)
230 1vsy_4 Proteasome activator BL 87.3 86 0.0029 41.2 34.9 335 67-408 230-662 (799)
231 2pzi_A Probable serine/threoni 87.2 6.3 0.00022 51.7 16.8 157 1580-1798 402-566 (681)
232 4gmo_A Putative uncharacterize 87.1 5 0.00017 52.5 15.6 187 157-348 39-256 (684)
233 1qqe_A Vesicular transport pro 87.0 17 0.00057 41.6 18.6 188 1569-1798 37-231 (292)
234 2ooe_A Cleavage stimulation fa 86.8 28 0.00096 43.8 22.3 176 1567-1797 319-494 (530)
235 1hh8_A P67PHOX, NCF-2, neutrop 86.5 5.6 0.00019 42.8 13.5 117 1290-1415 11-145 (213)
236 2vgx_A Chaperone SYCD; alterna 86.2 4.2 0.00014 41.2 11.4 86 1292-1383 28-118 (148)
237 1na0_A Designed protein CTPR3; 86.2 5.3 0.00018 38.0 11.8 88 1290-1383 14-106 (125)
238 2r5s_A Uncharacterized protein 86.1 3.4 0.00012 43.2 11.0 166 1569-1794 6-172 (176)
239 1ho8_A Vacuolar ATP synthase s 85.9 37 0.0013 41.0 20.5 55 478-532 418-477 (480)
240 3gyz_A Chaperone protein IPGC; 85.9 6.8 0.00023 39.9 12.7 101 1671-1797 35-135 (151)
241 3fga_B Serine/threonine-protei 85.8 38 0.0013 40.1 20.2 204 599-809 129-372 (403)
242 3urz_A Uncharacterized protein 85.2 6.5 0.00022 42.5 13.0 149 1291-1451 10-181 (208)
243 2fbn_A 70 kDa peptidylprolyl i 83.8 5.6 0.00019 42.4 11.6 114 1290-1407 43-172 (198)
244 2b6c_A Hypothetical protein EF 83.6 12 0.0004 40.9 14.0 131 72-223 58-188 (220)
245 1ihg_A Cyclophilin 40; ppiase 83.6 5.7 0.00019 47.6 12.6 126 1569-1725 223-354 (370)
246 3ro3_A PINS homolog, G-protein 83.6 4.8 0.00016 40.5 10.6 57 1290-1349 14-73 (164)
247 1kt0_A FKBP51, 51 kDa FK506-bi 83.2 8 0.00027 47.9 14.2 127 1568-1725 267-398 (457)
248 1w9c_A CRM1 protein, exportin 83.2 70 0.0024 36.6 24.9 132 119-251 86-227 (321)
249 2ifu_A Gamma-SNAP; membrane fu 82.9 13 0.00043 43.1 15.1 183 1569-1797 36-225 (307)
250 2c2l_A CHIP, carboxy terminus 82.9 19 0.00065 40.9 16.3 113 1568-1721 3-120 (281)
251 3gw4_A Uncharacterized protein 82.8 18 0.00061 38.1 15.3 127 1325-1451 26-171 (203)
252 2npp_B PP2A, B subunit, serine 82.8 44 0.0015 40.3 19.3 237 70-317 163-406 (449)
253 4gmo_A Putative uncharacterize 82.6 1.9 6.3E-05 56.7 8.3 148 645-802 39-213 (684)
254 1p5q_A FKBP52, FK506-binding p 82.3 5.3 0.00018 47.1 11.5 118 1290-1410 152-283 (336)
255 1lsh_A Lipovitellin (LV-1N, LV 82.3 1.1E+02 0.0037 42.0 25.9 161 124-314 408-580 (1056)
256 3rkv_A Putative peptidylprolyl 82.0 13 0.00043 38.0 13.1 127 1568-1725 10-145 (162)
257 3mv2_B Coatomer subunit epsilo 81.7 7.5 0.00026 44.7 11.8 118 1290-1415 105-235 (310)
258 1lsh_A Lipovitellin (LV-1N, LV 81.5 9.6 0.00033 52.4 15.1 132 70-219 392-539 (1056)
259 2ifu_A Gamma-SNAP; membrane fu 81.2 13 0.00043 43.0 14.2 125 1292-1417 83-221 (307)
260 1elw_A TPR1-domain of HOP; HOP 81.0 9.8 0.00034 35.6 11.1 87 1290-1382 9-100 (118)
261 2kck_A TPR repeat; tetratricop 80.5 12 0.00039 34.7 11.3 87 1693-1798 21-109 (112)
262 3jxy_A Alkylpurine DNA glycosy 80.4 25 0.00087 38.6 15.3 130 73-223 65-195 (232)
263 1hxi_A PEX5, peroxisome target 80.4 5.9 0.0002 38.4 9.2 83 1693-1795 32-114 (121)
264 2xcb_A PCRH, regulatory protei 79.6 14 0.00047 36.8 12.1 98 1672-1795 18-115 (142)
265 2qfc_A PLCR protein; TPR, HTH, 79.5 19 0.00066 41.0 14.9 54 1362-1415 163-220 (293)
266 2e2e_A Formate-dependent nitri 79.4 11 0.00037 39.1 11.6 88 1290-1383 49-144 (177)
267 2e2e_A Formate-dependent nitri 79.2 17 0.00058 37.6 13.1 111 1567-1716 42-153 (177)
268 1ihg_A Cyclophilin 40; ppiase 78.3 6.6 0.00022 47.0 10.5 23 1290-1312 228-250 (370)
269 2kck_A TPR repeat; tetratricop 78.2 5.1 0.00017 37.3 7.9 52 1363-1415 49-101 (112)
270 3q49_B STIP1 homology and U bo 78.1 15 0.0005 35.9 11.6 45 1364-1411 53-97 (137)
271 4g26_A Pentatricopeptide repea 77.6 28 0.00095 43.4 16.4 91 1325-1417 105-201 (501)
272 3qou_A Protein YBBN; thioredox 77.2 11 0.00037 43.2 11.6 117 1290-1415 122-243 (287)
273 2r5s_A Uncharacterized protein 76.8 13 0.00045 38.5 11.4 148 1290-1447 11-164 (176)
274 3q15_A PSP28, response regulat 76.7 81 0.0028 37.2 20.0 146 1569-1756 141-291 (378)
275 1hh8_A P67PHOX, NCF-2, neutrop 76.3 31 0.0011 36.7 14.6 123 1568-1715 36-158 (213)
276 2xev_A YBGF; tetratricopeptide 75.4 14 0.00047 35.6 10.4 17 1292-1308 9-25 (129)
277 4g1t_A Interferon-induced prot 74.8 34 0.0012 41.9 16.4 154 1547-1725 29-185 (472)
278 3o2t_A Symplekin; heat repeat, 74.8 1.4E+02 0.0048 35.2 21.6 128 169-309 41-182 (386)
279 1b89_A Protein (clathrin heavy 74.5 2 6.8E-05 52.0 4.3 137 1287-1449 63-199 (449)
280 2hr2_A Hypothetical protein; a 74.2 26 0.00088 35.8 11.9 123 1568-1715 10-139 (159)
281 2dba_A Smooth muscle cell asso 73.6 16 0.00055 36.0 10.6 88 1290-1383 33-128 (148)
282 1kt0_A FKBP51, 51 kDa FK506-bi 73.2 11 0.00036 46.7 10.8 118 1290-1410 273-404 (457)
283 3gs3_A Symplekin, LD45768P; he 72.4 59 0.002 36.1 15.2 123 168-303 30-166 (257)
284 2npp_B PP2A, B subunit, serine 72.2 75 0.0026 38.3 17.1 203 599-809 162-405 (449)
285 2c2l_A CHIP, carboxy terminus 71.8 9.3 0.00032 43.6 9.2 88 1290-1383 9-101 (281)
286 3ro3_A PINS homolog, G-protein 71.0 58 0.002 32.0 14.5 140 1614-1792 10-155 (164)
287 1wao_1 Serine/threonine protei 70.5 4.9 0.00017 50.1 6.9 88 1292-1385 13-105 (477)
288 2kat_A Uncharacterized protein 70.2 8.9 0.00031 36.4 7.3 61 1323-1383 17-82 (115)
289 4g26_A Pentatricopeptide repea 68.7 36 0.0012 42.4 14.2 154 1293-1455 34-203 (501)
290 1wao_1 Serine/threonine protei 66.9 5.4 0.00018 49.7 6.1 111 1570-1721 7-117 (477)
291 1na3_A Designed protein CTPR2; 66.7 22 0.00076 31.3 9.0 66 1566-1644 6-71 (91)
292 3ma5_A Tetratricopeptide repea 66.2 20 0.0007 32.9 8.7 65 1567-1644 5-69 (100)
293 3ma5_A Tetratricopeptide repea 66.2 12 0.00041 34.6 7.0 47 1364-1413 17-63 (100)
294 3gw4_A Uncharacterized protein 66.1 1.3E+02 0.0043 31.2 19.4 182 1581-1812 4-196 (203)
295 1na3_A Designed protein CTPR2; 65.8 57 0.002 28.4 11.7 80 1613-1723 9-88 (91)
296 3u3w_A Transcriptional activat 65.3 94 0.0032 35.0 16.2 141 1575-1756 121-267 (293)
297 4b4t_Q 26S proteasome regulato 65.0 26 0.00088 42.5 11.9 127 1289-1415 59-199 (434)
298 1ouv_A Conserved hypothetical 63.3 1.8E+02 0.0062 32.0 21.8 165 1568-1793 37-213 (273)
299 2l6j_A TPR repeat-containing p 62.4 14 0.00048 34.3 6.9 51 1363-1416 13-63 (111)
300 3g2s_A C-terminal fragment of 61.9 51 0.0017 33.2 11.0 113 558-675 12-130 (149)
301 1zu2_A Mitochondrial import re 61.3 11 0.00038 38.4 6.0 78 1671-1756 42-121 (158)
302 4f3v_A ESX-1 secretion system 61.2 41 0.0014 38.0 11.4 114 1295-1416 112-233 (282)
303 3k9i_A BH0479 protein; putativ 61.0 17 0.00057 34.6 7.2 49 1364-1415 37-85 (117)
304 4e6h_A MRNA 3'-END-processing 60.7 35 0.0012 44.2 12.2 114 1569-1721 434-550 (679)
305 3rkv_A Putative peptidylprolyl 60.5 48 0.0017 33.4 11.3 101 1671-1797 10-128 (162)
306 1zu2_A Mitochondrial import re 60.5 23 0.00079 36.1 8.2 59 1694-1756 18-76 (158)
307 2l6j_A TPR repeat-containing p 59.7 50 0.0017 30.2 10.4 64 1568-1644 3-66 (111)
308 1hz4_A MALT regulatory protein 59.0 1.1E+02 0.0037 35.8 15.7 162 1290-1451 98-277 (373)
309 2if4_A ATFKBP42; FKBP-like, al 58.9 18 0.00061 42.6 8.4 120 1569-1721 179-307 (338)
310 3k9i_A BH0479 protein; putativ 58.6 25 0.00085 33.3 8.0 66 1567-1645 25-90 (117)
311 2jak_A Serine/threonine-protei 57.9 1.9E+02 0.0064 34.1 16.3 197 58-263 162-361 (392)
312 3s4w_B Protein FACD2, fanconi 56.7 45 0.0015 45.7 12.3 152 186-347 392-544 (1323)
313 1juq_A ADP-ribosylation factor 55.9 55 0.0019 33.8 10.3 113 558-675 14-132 (171)
314 4b4t_Q 26S proteasome regulato 55.7 58 0.002 39.2 12.8 118 1577-1723 103-220 (434)
315 2kc7_A BFR218_protein; tetratr 55.6 24 0.00081 32.0 7.1 51 1363-1416 9-60 (99)
316 3n71_A Histone lysine methyltr 55.0 35 0.0012 42.2 10.4 87 1296-1382 320-421 (490)
317 3u3w_A Transcriptional activat 54.7 2.6E+02 0.009 31.1 20.7 173 1570-1792 76-263 (293)
318 2kat_A Uncharacterized protein 54.3 64 0.0022 30.1 10.2 65 1567-1644 17-81 (115)
319 1dvp_A HRS, hepatocyte growth 54.0 84 0.0029 34.0 12.1 111 558-674 6-118 (220)
320 2kc7_A BFR218_protein; tetratr 53.0 55 0.0019 29.4 9.2 70 1617-1717 4-74 (99)
321 1ouv_A Conserved hypothetical 52.0 2.7E+02 0.0092 30.5 27.0 240 1567-1869 4-253 (273)
322 3zyq_A Hepatocyte growth facto 51.0 72 0.0025 34.7 10.9 111 558-674 9-121 (226)
323 1x5b_A Signal transducing adap 50.6 68 0.0023 32.8 9.9 99 571-675 29-129 (163)
324 3mv2_B Coatomer subunit epsilo 49.9 86 0.0029 35.9 11.7 141 1304-1453 85-237 (310)
325 3ldz_A STAM-1, signal transduc 49.5 1E+02 0.0034 30.7 10.7 98 570-674 18-117 (140)
326 3rjv_A Putative SEL1 repeat pr 49.5 2.6E+02 0.0088 29.5 16.3 141 1567-1755 16-158 (212)
327 3gs3_A Symplekin, LD45768P; he 49.1 3.1E+02 0.011 30.3 22.3 117 147-269 48-173 (257)
328 3qww_A SET and MYND domain-con 48.8 26 0.00087 42.7 7.5 88 1295-1382 308-410 (433)
329 4b4t_R RPN7, 26S proteasome re 47.7 32 0.0011 41.9 8.2 87 1362-1448 139-229 (429)
330 4f3v_A ESX-1 secretion system 46.6 81 0.0028 35.6 10.7 129 1324-1453 101-234 (282)
331 3qww_A SET and MYND domain-con 45.4 1E+02 0.0035 37.3 12.2 86 1365-1451 309-406 (433)
332 3ebb_A Phospholipase A2-activa 43.8 1.4E+02 0.0046 34.2 12.1 109 159-271 154-265 (304)
333 1mhq_A ADP-ribosylation factor 43.6 1.2E+02 0.0042 30.3 10.3 100 571-675 15-120 (148)
334 2wxf_A Phosphatidylinositol-4, 39.9 41 0.0014 44.8 7.8 83 1782-1866 485-569 (940)
335 3mkq_A Coatomer beta'-subunit; 36.8 64 0.0022 42.8 9.5 44 1363-1417 732-775 (814)
336 3dad_A FH1/FH2 domain-containi 35.6 3.5E+02 0.012 31.0 13.4 67 565-632 165-235 (339)
337 3spa_A Mtrpol, DNA-directed RN 35.2 1.3E+02 0.0044 40.2 11.1 86 1325-1414 127-224 (1134)
338 3n71_A Histone lysine methyltr 34.5 1.6E+02 0.0054 36.3 11.6 87 1551-1645 331-422 (490)
339 2p58_C Putative type III secre 34.5 2E+02 0.0067 26.5 8.6 52 1397-1455 46-97 (116)
340 3qwp_A SET and MYND domain-con 34.4 1.6E+02 0.0055 35.6 11.5 87 1364-1451 297-395 (429)
341 3zyq_A Hepatocyte growth facto 34.0 1.6E+02 0.0056 31.8 10.3 109 685-802 9-117 (226)
342 3dad_A FH1/FH2 domain-containi 33.4 3.7E+02 0.013 30.8 13.2 112 24-142 118-233 (339)
343 3qwp_A SET and MYND domain-con 33.0 1.4E+02 0.0048 36.1 10.6 58 1325-1382 329-399 (429)
344 2if4_A ATFKBP42; FKBP-like, al 32.4 1.1E+02 0.0039 35.5 9.5 101 1671-1797 178-295 (338)
345 1juq_A ADP-ribosylation factor 32.1 3.1E+02 0.011 28.1 11.4 87 281-369 50-145 (171)
346 3mkq_A Coatomer beta'-subunit; 31.5 2E+02 0.0068 37.9 13.1 102 1334-1453 661-762 (814)
347 2y3a_A Phosphatidylinositol-4, 31.3 62 0.0021 43.7 7.4 116 1744-1867 593-723 (1092)
348 1pzq_A Erythronolide synthase; 31.3 53 0.0018 24.9 3.7 37 1507-1543 13-49 (60)
349 2xm6_A Protein corresponding t 29.8 8.1E+02 0.028 29.5 36.1 140 1567-1756 289-433 (490)
350 3eg5_B Protein diaphanous homo 29.7 6.9E+02 0.023 29.3 15.6 103 168-272 135-249 (383)
351 1elk_A Target of MYB1; superhe 29.5 2.7E+02 0.0093 28.1 10.4 111 558-673 17-132 (157)
352 1pc2_A Mitochondria fission pr 28.1 4.7E+02 0.016 26.2 11.7 88 1612-1725 31-118 (152)
353 1x5b_A Signal transducing adap 28.1 3.7E+02 0.013 27.3 11.1 89 665-762 38-128 (163)
354 2uwj_G Type III export protein 27.9 2E+02 0.0067 26.5 7.5 52 1397-1455 45-96 (115)
355 2jak_A Serine/threonine-protei 27.7 4E+02 0.014 31.3 12.6 186 599-797 174-361 (392)
356 4h7y_A Dual specificity protei 27.6 3.5E+02 0.012 27.2 10.1 112 1612-1756 12-124 (161)
357 1mhq_A ADP-ribosylation factor 27.4 4.7E+02 0.016 26.0 11.6 74 281-354 38-120 (148)
358 1vdy_A Hypothetical protein (R 26.9 1.2E+02 0.0042 29.9 6.8 56 263-318 31-86 (140)
359 3ldz_A STAM-1, signal transduc 26.1 3.5E+02 0.012 26.6 10.3 59 165-223 54-114 (140)
360 2fv2_A RCD1 required for cell 25.3 1.7E+02 0.0057 32.1 8.1 138 661-802 75-223 (268)
361 1t06_A Hypothetical protein; s 25.1 1.1E+02 0.0038 33.4 7.0 70 154-223 110-180 (235)
362 1elk_A Target of MYB1; superhe 24.9 3.5E+02 0.012 27.3 10.2 115 679-802 12-129 (157)
363 1ya0_A SMG-7 transcript varian 22.9 7.7E+02 0.026 30.1 14.6 84 1671-1777 151-234 (497)
364 4flb_A Regulation of nuclear P 22.3 1.8E+02 0.0062 28.3 7.3 64 68-131 39-103 (132)
365 3g2s_A C-terminal fragment of 22.3 2.9E+02 0.0099 27.6 8.8 85 282-368 49-142 (149)
366 2v5f_A Prolyl 4-hydroxylase su 22.1 4.4E+02 0.015 23.8 12.1 87 1613-1723 5-91 (104)
367 1hz4_A MALT regulatory protein 21.1 9.4E+02 0.032 27.3 21.1 178 1570-1792 15-200 (373)
368 3d9j_A RNA-binding protein 16; 21.0 4.7E+02 0.016 25.9 10.1 83 927-1016 30-118 (145)
369 1dvp_A HRS, hepatocyte growth 20.9 7.7E+02 0.026 26.2 13.2 89 665-762 28-118 (220)
370 2p0t_A UPF0307 protein pspto_4 20.1 3.4E+02 0.012 27.9 8.7 114 1476-1596 49-165 (176)
371 1sz9_A PCF11 protein; RNA poly 20.0 1.5E+02 0.005 29.6 6.0 56 925-987 29-84 (144)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=2e-32 Score=393.85 Aligned_cols=933 Identities=13% Similarity=0.138 Sum_probs=598.5
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~-g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~ 189 (1880)
+...|.++. +.|.+++..|...+....... ....++.....++.++++|. +.++..|.+|+.+++.++++++.
T Consensus 8 l~~lL~~l~--s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 8 ISNLLEKMT--SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHhcC--CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH---
Confidence 445566654 568999999998888765542 22333456677888889986 57788999999999999998876
Q ss_pred hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000194 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1880)
Q Consensus 190 ~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1880)
++++.+++.++.++.|+++.||.+|+.+++.+...+.... ......+.+.++|.+..++.+..+++++++|+.+++.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999887655321 11344577889999999998533588999999999999
Q ss_pred HHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---CCCcchHHHH
Q 000194 268 LRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---PAERDSGFIA 344 (1880)
Q Consensus 268 l~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---~~~r~~a~~a 344 (1880)
++..++.+.++++++++.++..+.+.++.||..++.+++.++...++.| ++.+|+.++..|.+ ...|..++.+
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~~~ 237 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQC 237 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 9877777888999999999999999999999999999999998887665 34556666666643 2468899999
Q ss_pred HHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC-CCHHHH-H-H-
Q 000194 345 LGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG-LSTTLV-D-A- 420 (1880)
Q Consensus 345 lg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~-ls~~l~-~-~- 420 (1880)
+|.++..+|+.+.||++.+++.+...+.+.+...+..++.+++.+++.+|+.+.||++.+++.++..- .++... + .
T Consensus 238 l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~ 317 (1230)
T 1u6g_C 238 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDED 317 (1230)
T ss_dssp HHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccc
Confidence 99999999999999999999999999987666667789999999999999999999999999998642 111110 0 0
Q ss_pred -----HH------HH---HHhC---CCChHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCCCCCccCCCccccccCCchh
Q 000194 421 -----LE------QI---TVSI---PSLLPTIQDRLLDCISFVLS--KSHYSQARPAATPIRGNVMNIPQQVSDLNGSAP 481 (1880)
Q Consensus 421 -----l~------~i---~~~~---p~l~~~i~~~ll~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1880)
.. +. .+.+ ......+.....+.+..+.. +..+.+.-+. . .+.... ...+. +...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~--l-~~~l~~---~l~d~-~~~V 390 (1230)
T 1u6g_C 318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT--V-SPALIS---RFKER-EENV 390 (1230)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTT--T-HHHHHS---TTSCS-SSHH
T ss_pred cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHH--H-HHHHHH---HcCCC-chHH
Confidence 00 00 0000 00011222222223322211 1000000000 0 000000 00011 1223
Q ss_pred HHHHHHhhcccc--cC----------------C--Cc---chhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCcc
Q 000194 482 VQLALQTLARFN--FK----------------G--HD---LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVS 538 (1880)
Q Consensus 482 ~~~Al~~L~~~~--~~----------------~--~~---l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~ 538 (1880)
...|+++++.+- .. | .. +.+.+-..+.+.+.++++.+|.++...++.++......
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-- 468 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-- 468 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT--
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh--
Confidence 344555555430 00 0 00 11222233445588889999988877777766432210
Q ss_pred ccccCCccccccccchhHHHHHHHHHHHHHHhcCCCh--hHHHHHHHhccC------CCCcchhhccHhhHHHHHHHhCC
Q 000194 539 FTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADV--TVRHSIFSSLYG------NRGFDDFLAQADCLSAIFAALND 610 (1880)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~--~vR~~~l~~l~~------~~~fd~~L~~~~~l~~L~~~l~D 610 (1880)
..+.+..+++.++.. +.|+.+ .+|..++..+.. ...|.+|+ +.+++.++.+++|
T Consensus 469 ---------------l~~~l~~ll~~l~~~-L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~llp~L~~~l~d 530 (1230)
T 1u6g_C 469 ---------------LTQHIPVLVPGIIFS-LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALVPPVVACVGD 530 (1230)
T ss_dssp ---------------TGGGHHHHHHHHHHH-TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTHHHHHHHHTC
T ss_pred ---------------hHHHHHHHHHHHHHH-HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHHHHHHHHHcc
Confidence 123356666666654 567654 888887776631 12244444 3578999999999
Q ss_pred CCHhHHHHHHHHHHhhhcCCc-------ccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHH
Q 000194 611 EDFDVREYAISVAGRLSEKNP-------AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1880)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p-------~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1880)
.++.||..|+.+++.+++..+ ..+.|++..++..++..+...+.+...|+.|+.++|.++...++.+.+|++.
T Consensus 531 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~ 610 (1230)
T 1u6g_C 531 PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPN 610 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHH
Confidence 999999999999998885432 2567888887777777775332677899999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc-CCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcC
Q 000194 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~ 762 (1880)
+++.+.+.+.++ ..+..++.+++.++... +.++.+|+..++|.+...+.+. +...|.+|+.+|+.++...+
T Consensus 611 ~l~~L~~~l~~e-------~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~-~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 611 TLQIFLERLKNE-------ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKN-QRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHHHHHTTSS-------SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccc-------hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccc
Confidence 999999988753 35667788888887543 3468899999999999999876 57799999999999999887
Q ss_pred cccccCCcchHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcccCccch-----hhccc----cCCCc--ccc-------
Q 000194 763 YVITPYNEYPQLLGLLLKMLN--GELVWSTRREVLKVLGIMGALDPHAH-----KRNQQ----LSGSH--GEV------- 822 (1880)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll~~L~--~~~~~~vr~~~l~~lg~lgaldp~~~-----~~~~~----~~~~~--~~~------- 822 (1880)
..+. .+.+.+.+...+. ++.+..++..++.+++.+....|-.. ..... +.... +..
T Consensus 683 ~~~~----~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~ 758 (1230)
T 1u6g_C 683 DSLT----AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDF 758 (1230)
T ss_dssp TTCC----HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred ccCC----HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHH
Confidence 5441 1234444433222 24577888888988887743322110 00000 00000 000
Q ss_pred cccCCCCCCCCCCCcccccccCCC-CCCCc-----ccc--hHHHHHHHHHH---------------hcCC-ChhhhHHHH
Q 000194 823 TRAASDSGQHIQPMDEFPMDLWPS-FATSE-----DYY--STVAINSLMRI---------------LRDP-SLASYHQKV 878 (1880)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-----~~~--~~~vi~~Ll~~---------------L~d~-s~~~~~~~~ 878 (1880)
.+............+.+...++.. ..+.. +-+ ....+..++.. ++++ .....+..+
T Consensus 759 ~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1230)
T 1u6g_C 759 FQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLA 838 (1230)
T ss_dssp HHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHH
Confidence 000000000000000000000000 00000 000 00111222111 1111 011111122
Q ss_pred HHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCccc
Q 000194 879 VGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATN 958 (1880)
Q Consensus 879 ~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~ 958 (1880)
+.++..+-...+ ..+ .+++.+.++..+.+.++.+|..+...+|.++ ..+...|+|.++..+..- . +
T Consensus 839 l~~l~~~g~~~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~---~~~~~~~lp~ll~~l~~~----~--~-- 904 (1230)
T 1u6g_C 839 LLSLGEVGHHID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSIS---VGNLPEYLPFVLQEITSQ----P--K-- 904 (1230)
T ss_dssp HHHHHHHHHHSC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHSC----G--G--
T ss_pred HHHHHHhcccCC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHh---ccCHHHHHHHHHHHHhcc----c--h--
Confidence 222333322211 122 4677788888888777788988888888876 346667777777766531 1 1
Q ss_pred ccccchhHHHHHHHHHHHh-hhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhh
Q 000194 959 RTYRGLPVLHLVQQLCLAL-NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLF 1037 (1880)
Q Consensus 959 ~~~~~~~~l~~i~~l~~~l-~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l 1037 (1880)
.+...+..+..+.... ++.+.||.+.+++.+++.+++.+. .-+..+..+++.+.... -..++|.+...+
T Consensus 905 ---~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~-~~r~~~a~~lg~l~~~~------~~~l~p~l~~~l 974 (1230)
T 1u6g_C 905 ---RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE-GTRNVVAECLGKLTLID------PETLLPRLKGYL 974 (1230)
T ss_dssp ---GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSST-THHHHHHHHHHHHHHSS------GGGTHHHHTTTS
T ss_pred ---hhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcch-hhHHHHHHHHhhhhccC------hHHHHHHHHHHh
Confidence 1224455555544333 567999999999999998875331 11334444444443321 245788888877
Q ss_pred cCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHHH
Q 000194 1038 KVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLL 1115 (1880)
Q Consensus 1038 ~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l~ 1115 (1880)
..+ ...+|..++.+++.+... ..+.+|+..++++++..+++++.++|.+++.+|+.++.+.|..+..+++.+.+.+.
T Consensus 975 ~~~-~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 975 ISG-SSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp SSS-CHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHH
Confidence 654 456899999998888654 23456788888888899998889999999999999999988888888888888876
Q ss_pred hC
Q 000194 1116 KH 1117 (1880)
Q Consensus 1116 ~~ 1117 (1880)
..
T Consensus 1054 ~~ 1055 (1230)
T 1u6g_C 1054 NE 1055 (1230)
T ss_dssp HT
T ss_pred HH
Confidence 63
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.6e-32 Score=379.71 Aligned_cols=758 Identities=13% Similarity=0.145 Sum_probs=534.8
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
+...|..|-..|.++.. . |.....+-.|+..+.+.++.||..|+-.|+..+. .+........-..+-+.+.
T Consensus 26 d~~~r~~Ae~~L~~~~~-~-----p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~---~~w~~~~~~~~~~ik~~ll 96 (852)
T 4fdd_A 26 DTTIQRTVQQKLEQLNQ-Y-----PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK---AHFQNFPNGVTDFIKSECL 96 (852)
T ss_dssp CHHHHHHHHHHHHHHTT-S-----HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTT---TSGGGCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-C-----CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH---HccCCCCHHHHHHHHHHHH
Confidence 45577777777776532 2 2223334444455578889999999998887653 1221122223345556666
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHH----HH
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTN----YL 321 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~----yl 321 (1880)
.++.+++ ..+|+.+..+++.++...+. ...+++++.++..+++.++.+|+.++.+++.++...+..|... ++
T Consensus 97 ~~l~~~~-~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~ 172 (852)
T 4fdd_A 97 NNIGDSS-PLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172 (852)
T ss_dssp TTTTCSS-HHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred HHHcCCC-HHHHHHHHHHHHHHHHhcCc---cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence 7777764 67899999999999875422 2234566677777788899999999999999998776665432 36
Q ss_pred HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchH
Q 000194 322 KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEP 399 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~ 399 (1880)
+.+++.++..++++. .|..|+.+++.+....+..+.++++.+++.+...+.+.+.+.+..++.|++.+++..++.+.|
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 778888888887554 478999999988776666677888889998888887655555678999999999987777778
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc
Q 000194 400 HVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479 (1880)
Q Consensus 400 ~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1880)
|++.+++.++..
T Consensus 253 ~l~~l~~~l~~~-------------------------------------------------------------------- 264 (852)
T 4fdd_A 253 HMHNIVEYMLQR-------------------------------------------------------------------- 264 (852)
T ss_dssp GHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 887766654421
Q ss_pred hhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHH
Q 000194 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559 (1880)
Q Consensus 480 ~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1880)
+.++++.||..|...+..+..... + .......+.
T Consensus 265 -------------------------------~~~~~~~vr~~a~e~l~~l~~~~~--~-------------~~~~~~~~~ 298 (852)
T 4fdd_A 265 -------------------------------TQDQDENVALEACEFWLTLAEQPI--C-------------KDVLVRHLP 298 (852)
T ss_dssp -------------------------------HTCSSHHHHHHHHHHHHHHTTSTT--H-------------HHHHTTTHH
T ss_pred -------------------------------ccCCcHHHHHHHHHHHHHHhcchh--H-------------HHHHHHHHH
Confidence 011122333333322222111000 0 000011233
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC--CCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 560 ELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND--EDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D--~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
.+++.++... ..++.+.. . +..+...|.. + .| .+..||..|..+++.++...|..+.|.
T Consensus 299 ~l~p~ll~~l-~~~e~d~~--~---~~~d~~ed~~----~---------dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~ 359 (852)
T 4fdd_A 299 KLIPVLVNGM-KYSDIDII--L---LKGDVEGGSG----G---------DDTISDWNLRKCSAAALDVLANVYRDELLPH 359 (852)
T ss_dssp HHHHHHHHHT-SCCHHHHH--H---HHC-------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHc-CCcHhHHH--H---hcCCcccccc----c---------ccccccchHHHHHHHHHHHHHHhccHHHHHH
Confidence 3343333321 11211111 0 0000000000 0 01 456799999999999999888776665
Q ss_pred HHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHH
Q 000194 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR 717 (1880)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~ 717 (1880)
+.+.+ ..+..+ ++++.|+.|+.+||.+++.+++.+.||++.+++.+++.+.++ ++.|+.+++.++|.++.
T Consensus 360 l~~~l----~~~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 360 ILPLL----KELLFH-HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-----KALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHH----HHHHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-----SHHHHHHHHHHHHHTHH
T ss_pred HHHHH----HHHhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Confidence 54443 333344 579999999999999999998888899999999999999875 88999999999999998
Q ss_pred hcC-CchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000194 718 VGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1880)
Q Consensus 718 ~~g-~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~ 796 (1880)
..+ ....+|+..++|.+++.+.|. +..+|..|+.+|+.+++..+..+.||. |.+++.|+..++... .+....++.
T Consensus 430 ~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~-~~~~~~~~~ 505 (852)
T 4fdd_A 430 WVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQ-HKNLLILYD 505 (852)
T ss_dssp HHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhC-hHHHHHHHH
Confidence 655 457889999999999999886 578999999999999999998888885 899999999997553 344445566
Q ss_pred HHHHHccc-CccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHH---HhcCCChh
Q 000194 797 VLGIMGAL-DPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMR---ILRDPSLA 872 (1880)
Q Consensus 797 ~lg~lgal-dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~---~L~d~s~~ 872 (1880)
++|.+... .+. ....+|+ ..+++.|++ .+.|++..
T Consensus 506 ai~~l~~~~~~~----------------------------------------~~~~~~~-~~l~p~l~~~~~~l~d~~~~ 544 (852)
T 4fdd_A 506 AIGTLADSVGHH----------------------------------------LNKPEYI-QMLMPPLIQKWNMLKDEDKD 544 (852)
T ss_dssp HHHHHHHHHGGG----------------------------------------GCCHHHH-HHHHHHHHHHHHHSCTTCTT
T ss_pred HHHHHHHHhhhh----------------------------------------hccHHHH-HHHHHHHHHHHHhcccccHH
Confidence 66655310 000 0112344 566777774 55565433
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcC-----------------CcchhHHHHHHHHHHHHHHHHhHH
Q 000194 873 SYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC-----------------DDYLKDYITWKLGTLVSIVRQHIR 935 (1880)
Q Consensus 873 ~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~-----------------~~~~~~~~~~~l~~lv~~~~~~i~ 935 (1880)
. ..+++++..++..+|..+.||++.+++.++..++++ +...+..++..++.++..+|.++.
T Consensus 545 -~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~ 622 (852)
T 4fdd_A 545 -L-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622 (852)
T ss_dssp -H-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGH
T ss_pred -H-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHH
Confidence 3 378999999999999999999999999888877642 233667778999999999999999
Q ss_pred HhH--HHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHH
Q 000194 936 KYL--QELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILH 1013 (1880)
Q Consensus 936 ~y~--~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~ 1013 (1880)
+|+ +.+++.+.+.++... + .+++ .++.+++.++...+.+|.+|++.++|.+++.+++.+.. -+..+..+++
T Consensus 623 ~~~~~~~~~~~l~~~l~~~~-~----~vr~-~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~-v~~~a~~alg 695 (852)
T 4fdd_A 623 QLVARSNILTLMYQCMQDKM-P----EVRQ-SSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFIS-VCNNATWAIG 695 (852)
T ss_dssp HHHHTCCHHHHHHHHTTCSS-H----HHHH-HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHH-HHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHhCCCC-h----hHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchH-HHHHHHHHHH
Confidence 998 899999999886543 1 1233 78899999999999999999999999999999543211 1233333343
Q ss_pred HH-HHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHhhcccc--cccchhHhHHHHHHHhhCC-CCHHHHHHH
Q 000194 1014 TL-EVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTRLIPRV--QVTGHISSLVHHLKLVLDG-KNDELRKDA 1088 (1880)
Q Consensus 1014 ~l-~~~g~~~~~~~~~ilp~l~~~l~~~-~~~~vr~~ai~~l~~l~~~~--~~~~~~~~ii~~l~~~l~~-~~~~l~~~a 1088 (1880)
.+ ..+|..+.+|++.++|.++++++.. .+..+++.++.++|+|+... .+.||++.+++++++.|.. .+.+.|..+
T Consensus 696 ~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a 775 (852)
T 4fdd_A 696 EISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSA 775 (852)
T ss_dssp HHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHH
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHH
Confidence 33 4578889999999999999999753 57889999999999998862 3569999999999999974 567889999
Q ss_pred HHHHHHHHHHhccccccchhHHHHHHHhCCCCchhHHHHHHHHhc
Q 000194 1089 VDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRR 1133 (1880)
Q Consensus 1089 l~~L~~l~~~~g~~f~~fip~i~~~l~~~~~~~~~~~~~~~~~~~ 1133 (1880)
+..||.++.+-+......+..+...+.......++......++..
T Consensus 776 ~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 776 FRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999988777777777777777755444555555555544
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1e-30 Score=365.04 Aligned_cols=777 Identities=14% Similarity=0.107 Sum_probs=533.8
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHh-hhch
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRD--PTLAVRERAVEALRACLRVIE-KRET 230 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D--~~~~VR~aA~~al~~~~~~i~-~r~~ 230 (1880)
+..+++++.+... ..|..|...|+++... +.+.+++.++..+.+ +++.||..|+.+|+.++.... .++.
T Consensus 3 l~~~L~~~~s~d~-~~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (876)
T 1qgr_A 3 LITILEKTVSPDR-LELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (876)
T ss_dssp HHHHHHGGGCSCH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHH
Confidence 4457777765444 4566666677876643 456788888888877 468999999999998763210 0111
Q ss_pred hhHHHHH-------HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcc--hhHHHHHH
Q 000194 231 RWRVQWY-------YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHR--DRLVRLSI 301 (1880)
Q Consensus 231 ~~~~~~~-------~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~--~~~Vr~~~ 301 (1880)
.....|. ..+-+.+..++.+++ ..+ ++++.+++.++...+ ...+.+++++.++..+++. ++.+|..+
T Consensus 75 ~~~~~w~~l~~~~~~~ik~~ll~~l~~~~-~~~-~~~~~~l~~i~~~~~--~~~~w~~ll~~l~~~l~~~~~~~~~r~~a 150 (876)
T 1qgr_A 75 QYQQRWLAIDANARREVKNYVLHTLGTET-YRP-SSASQCVAGIACAEI--PVNQWPELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTTCC-SSS-CHHHHHHHHHHHHHG--GGTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHhCCCc-HHH-HHHHHHHHHHHHhhC--cccccHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 1122332 234445667777654 355 888889999887532 1234566777788888888 89999999
Q ss_pred HHHhHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHHHHHHhhchhhhhhh--hhHHHHHHHHhhcCC
Q 000194 302 TSLLPRIAHFL-RDRFVTNYLKICMNHILTVLRIP----AERDSGFIALGEMAGALDGELFHY--LPTITSHLREAIAPR 374 (1880)
Q Consensus 302 ~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~----~~r~~a~~alg~la~~v~~~~~p~--l~~i~~~l~~~l~~~ 374 (1880)
+.+++.++... ++.| ..+++.+++.+...+.++ ..|..|+.+++.++..++..+... .+.+++.+.+.+.+.
T Consensus 151 l~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 229 (876)
T 1qgr_A 151 LEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229 (876)
T ss_dssp HHHHHHHHHHSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 99999998754 4443 458899999999999765 247899999999988777654322 234777777776544
Q ss_pred CCCCCchHHHHHHHHHHHhCCCchHHHH-HHHHHHHhcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCC
Q 000194 375 RGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSH 451 (1880)
Q Consensus 375 ~~~~~~~a~~~l~~la~~~g~~~~~~l~-~ll~~l~~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~ 451 (1880)
+.+.+..++.|++.++...++.+.||+. .+++.++... .++.
T Consensus 230 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------------------------------- 274 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE----------------------------------- 274 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHH-----------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchH-----------------------------------
Confidence 4344567999999999999888999998 8877765421 1111
Q ss_pred CCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhh
Q 000194 452 YSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVA 531 (1880)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~ 531 (1880)
....|++.+..+.- ...+. . .+ +++ + ... .
T Consensus 275 -----------------------------v~~~al~~l~~l~~-------~~~~~--~-~~--~~~----~---~~~--~ 304 (876)
T 1qgr_A 275 -----------------------------VALQGIEFWSNVCD-------EEMDL--A-IE--ASE----A---AEQ--G 304 (876)
T ss_dssp -----------------------------HHHHHHHHHHHHHH-------HHHHH--H-HH--HHH----H---HHH--S
T ss_pred -----------------------------HHHHHHHHHHHHHH-------HHHhH--h-hh--hcc----c---ccc--C
Confidence 12223333322200 00000 0 00 000 0 000 0
Q ss_pred ccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhc------CCChhHHHHHHHhccCC-CCcchhhccHhhHHHH
Q 000194 532 NSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA------DADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAI 604 (1880)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~------d~~~~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L 604 (1880)
..+.. .........+..+++.++..... |.++.+|.++..+|..- ..+... .-+.+++.+
T Consensus 305 ~~~~~------------~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l 371 (876)
T 1qgr_A 305 RPPEH------------TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFI 371 (876)
T ss_dssp SCCSS------------CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHH
T ss_pred CCccc------------hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh-hHHHHHHHH
Confidence 00000 00001122345555555554322 45688999887777410 001110 123567777
Q ss_pred HHHhCCCCHhHHHHHHHHHHhhhcCCc-ccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc--ccCch
Q 000194 605 FAALNDEDFDVREYAISVAGRLSEKNP-AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL--IRPYI 681 (1880)
Q Consensus 605 ~~~l~D~~~~VR~~a~~~l~~l~~~~p-~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~--~~py~ 681 (1880)
...++|+++.+|.+|+.++|.++...+ ..+.|++..++..++..+.+ +.+..|..|+++|+.+++..+.. ..+|+
T Consensus 372 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l 449 (876)
T 1qgr_A 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD--PSVVVRDTAAWTVGRICELLPEAAINDVYL 449 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH
T ss_pred HHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCchhcccHHHH
Confidence 788899999999999999999998765 44556666655555555544 57889999999999999988765 46999
Q ss_pred HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC--------------CchhhhHHhHHHHHHHHHhcCC--chh
Q 000194 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG--------------FGMRQYISELMPLIVEALLDGA--AVT 745 (1880)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g--------------~~~~~~~~~l~p~l~~~l~d~~--~~~ 745 (1880)
+.+++.++..+.+ .+.++..++.+++.++...+ ..+.||++.++|.+++.+.+.. +..
T Consensus 450 ~~~l~~l~~~l~~------~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~ 523 (876)
T 1qgr_A 450 APLLQCLIEGLSA------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNN 523 (876)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTT
T ss_pred HHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhh
Confidence 9999999999875 37788999999999988754 4589999999999999998642 346
Q ss_pred hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcC----------CCC----HHHHHHHHHHHHHHcccCc-cchh
Q 000194 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG----------ELV----WSTRREVLKVLGIMGALDP-HAHK 810 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~----------~~~----~~vr~~~l~~lg~lgaldp-~~~~ 810 (1880)
.|..++.+++.++...|....||. +.+++.++..+.. +.+ +.+|..++.+++.+...-+ .
T Consensus 524 ~r~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~--- 598 (876)
T 1qgr_A 524 LRSSAYESLMEIVKNSAKDCYPAV--QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ--- 598 (876)
T ss_dssp HHHHHHHHHHHHHHTCCSTTHHHH--HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH---
T ss_pred HHHHHHHHHHHHHHHCchhhHHHH--HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChh---
Confidence 888999999999999887555543 4666666666542 212 4567777777776642100 0
Q ss_pred hccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCCh-hhhHHHHHHHHHHHHHHh
Q 000194 811 RNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSM 889 (1880)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~-~~~~~~~~~al~~i~~~~ 889 (1880)
++ ..|...+++.|++++++++- ...+..++.++..++...
T Consensus 599 -------------------------------~~--------~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~ 639 (876)
T 1qgr_A 599 -------------------------------DA--------LQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639 (876)
T ss_dssp -------------------------------HH--------HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------hh--------hHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 00 01446788899999987641 245678999999999999
Q ss_pred CCCCCCCcchhhHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHH
Q 000194 890 GLGCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968 (1880)
Q Consensus 890 ~~~~~~~l~~iip~ll~~l~~~-~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~ 968 (1880)
|..+.||++.++|.++..+++. ++.+|..++..++.++..+++++.||++.+++.+.+.+...+.. +. ....++.
T Consensus 640 ~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~---~~-~~~~~~~ 715 (876)
T 1qgr_A 640 GGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVH---RS-VKPQILS 715 (876)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSC---GG-GHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCcccc---HH-hhHHHHH
Confidence 9999999999999999999987 67899999999999999999999999999999999999763211 11 2347899
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHhcccccccCc-------hhhHHHHHHHHH----HHhc----------chhhhhh
Q 000194 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCND-------YTYVLDILHTLE----VFGG----------TLDEHMH 1027 (1880)
Q Consensus 969 ~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~-------~~~~~~il~~l~----~~g~----------~~~~~~~ 1027 (1880)
+++.++..+|++|.+|++.++|.+++.+.......+ ......++.++. .+|. .+.+|++
T Consensus 716 ~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 795 (876)
T 1qgr_A 716 VFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVE 795 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHH
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHH
Confidence 999999999999999999999999998864210000 122333444443 3443 4566777
Q ss_pred hhHHHHHHhhcCCC-cHHHHHHHHHHHHhhcccc---cccch-hHhHHHHHHH-hhCCCCHHHHHHHHHHHHHHHH
Q 000194 1028 LLLPALIRLFKVDA-PVDIRRAAIETLTRLIPRV---QVTGH-ISSLVHHLKL-VLDGKNDELRKDAVDALCCLAH 1097 (1880)
Q Consensus 1028 ~ilp~l~~~l~~~~-~~~vr~~ai~~l~~l~~~~---~~~~~-~~~ii~~l~~-~l~~~~~~l~~~al~~L~~l~~ 1097 (1880)
.+++.+........ ...+|..|+.++|.++... .+.+| .+.+++++++ .++++++++|.+|..+++.+..
T Consensus 796 ~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 796 FILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 77776666655433 7899999999999998864 45677 6788999998 9988899999999999998874
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.7e-30 Score=362.08 Aligned_cols=758 Identities=13% Similarity=0.159 Sum_probs=532.2
Q ss_pred HHHHHHHhh-cccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHhh----
Q 000194 110 KFSNYMRTV-FEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-RVEYRRFAAVLILKEMAEN---- 183 (1880)
Q Consensus 110 ~~~~~L~~~-l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~-~~~~~R~aA~~~l~~la~~---- 183 (1880)
.+...|... + +.|.++++.|.+.|..+... ..+++.. .+++.+.++ .+...|+.|...|+.....
T Consensus 5 ~l~~~L~~~~~--s~d~~~r~~Ae~~L~~~~~~---~~~~~~~----~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~ 75 (861)
T 2bpt_A 5 EFAQLLENSIL--SPDQNIRLTSETQLKKLSND---NFLQFAG----LSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 (861)
T ss_dssp HHHHHHHHHHH--CSSHHHHHHHHHHHHHHHHH---CHHHHHH----HHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred HHHHHHHHccc--CcCHHHHHHHHHHHHHHHhh---CHHHHHH----HHHHHHhCCCCChHHHHHHHHHHHhhccCcChH
Confidence 455666676 6 35899999999999887552 1233433 344444432 4567888888888876422
Q ss_pred --------cCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCCh
Q 000194 184 --------AST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV 254 (1880)
Q Consensus 184 --------~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~ 254 (1880)
.+. .=......|.+.++..|.++++.||..++.+++.+..... + ...| +.+++.+...+.++.+.
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~---p--~~~w-~~ll~~L~~~l~~~~~~ 149 (861)
T 2bpt_A 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL---P--HGAW-PELMKIMVDNTGAEQPE 149 (861)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---G--GTCC-HHHHHHHHHHTSTTSCH
T ss_pred HHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC---c--cccc-HHHHHHHHHHHhcCCCH
Confidence 111 1123455677888899999999999999999988765421 1 0123 56777777777765246
Q ss_pred hHHHHHHHHHHHHHHcchhh---hHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHHH-HHHHHHHHHH
Q 000194 255 HSIHGSLLAVGELLRNTGEF---MMSRYREVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFVT-NYLKICMNHI 328 (1880)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~---~~~~~~~i~~~ll~~~~~~--~~~Vr~~~~~~i~~la~~~~~~f~~-~yl~~~~~~L 328 (1880)
..+++++.+++.+.+..+.. +.++...+++.+...+.+. ++.||.+++.++..+..+....+.. .+.+.+++.+
T Consensus 150 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 229 (861)
T 2bpt_A 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Confidence 88999999999999843322 5677888888888888876 7899999999999887665544321 1224466666
Q ss_pred HHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhh-HHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHH
Q 000194 329 LTVLRIPA--ERDSGFIALGEMAGALDGELFHYLP-TITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLL 405 (1880)
Q Consensus 329 l~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~-~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll 405 (1880)
...+..+. .|..|+.+++.++...++.+.+|++ .+++.+...+.+...+.+..++.+|+.+++... +..
T Consensus 230 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~-----~~~--- 301 (861)
T 2bpt_A 230 CEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEI-----DIA--- 301 (861)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH-----HHH---
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-----hhh---
Confidence 66665443 4789999999999998888889998 888888877765433333456666665554310 000
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHH
Q 000194 406 DIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLA 485 (1880)
Q Consensus 406 ~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 485 (1880)
.. .. . .
T Consensus 302 --~~---------------------------~~-----~---~------------------------------------- 307 (861)
T 2bpt_A 302 --YE---------------------------LA-----Q---F------------------------------------- 307 (861)
T ss_dssp --HH---------------------------HH-----H---C-------------------------------------
T ss_pred --hh---------------------------hh-----h---c-------------------------------------
Confidence 00 00 0 0
Q ss_pred HHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHH
Q 000194 486 LQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKL 565 (1880)
Q Consensus 486 l~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~L 565 (1880)
+.. +. . ..+ . ....+..+++.+
T Consensus 308 ----~~~---~~-------------~-~~~-~------------------------------------~~~~~~~il~~l 329 (861)
T 2bpt_A 308 ----PQS---PL-------------Q-SYN-F------------------------------------ALSSIKDVVPNL 329 (861)
T ss_dssp ----TTC---SC-------------C-CCC-H------------------------------------HHHHHHHHHHHH
T ss_pred ----cCC---ch-------------h-hHH-H------------------------------------HHHHHHHHHHHH
Confidence 000 00 0 000 0 001122223322
Q ss_pred HHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHH
Q 000194 566 LIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQL 645 (1880)
Q Consensus 566 l~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~ 645 (1880)
+.. +.+++ . +. .|+++.+|..+..+++.++...+..+.|.+.+.+.+
T Consensus 330 l~~-l~~~~--------------~--d~---------------~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~- 376 (861)
T 2bpt_A 330 LNL-LTRQN--------------E--DP---------------EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQ- 376 (861)
T ss_dssp HHH-TTCCC--------------C--C----------------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHH-
T ss_pred HHH-HHhcc--------------c--cc---------------ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHH-
Confidence 221 11110 0 00 133457777788888777776665555544433322
Q ss_pred HHHHhcCCCChHhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCch-
Q 000194 646 LTYLEQSSADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM- 723 (1880)
Q Consensus 646 l~~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~- 723 (1880)
...+ .+++.|+.|+.+++.+++.++ ..+.+|++.+++.+++.+.++ ++.++..++.++|.++...+..+
T Consensus 377 ---~l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 377 ---NITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ-----SLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp ---HTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred ---HcCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHhhhhcC
Confidence 2233 567888888888888887664 667788899999999998875 78899999999999998877655
Q ss_pred -hhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcC----cccccCCcchHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 000194 724 -RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG----YVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKV 797 (1880)
Q Consensus 724 -~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~----~~i~p~~~~p~ll~~Ll~~L~~~~-~~~vr~~~l~~ 797 (1880)
.+|++.++|.+++.+.|. ..+|..|+++|+.+++..+ ..+.||. |.+++.|++.++... ++.+|..++++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 679999999999999874 6799999999999999876 4466774 789999999997432 36899999999
Q ss_pred HHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcC---------
Q 000194 798 LGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRD--------- 868 (1880)
Q Consensus 798 lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d--------- 868 (1880)
+|.+....+... .. |...+++.++..|.+
T Consensus 524 l~~l~~~~~~~~-----------------------------------------~~-~~~~l~~~l~~~l~~~~~~~~~i~ 561 (861)
T 2bpt_A 524 LTTMVEYATDTV-----------------------------------------AE-TSASISTFVMDKLGQTMSVDENQL 561 (861)
T ss_dssp HHHHHHHCCGGG-----------------------------------------HH-HHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHcchhh-----------------------------------------HH-HHHHHHHHHHHHHHHHHhhhcccC
Confidence 998864322100 00 112333344444331
Q ss_pred -----CChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHHhHHHhHHHHH
Q 000194 869 -----PSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQHIRKYLQELF 942 (1880)
Q Consensus 869 -----~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~~~i~~y~~~i~ 942 (1880)
......+..+++++..+++.+|..+.||++.++|.++..++..+. .+++.++..++.++...+.++.||++.++
T Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~ 641 (861)
T 2bpt_A 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFS 641 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 112235567899999999999998899999999999999998776 89999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccc-cCchhhHHHHHHHH-HHHhc
Q 000194 943 SLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAER-CNDYTYVLDILHTL-EVFGG 1020 (1880)
Q Consensus 943 ~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~-~~~~~~~~~il~~l-~~~g~ 1020 (1880)
+.+.+.++..+ + . ....++.+++.++..+++.|.||++.++|.+++.+.+.+. ..-+..+..++..+ ..+|.
T Consensus 642 ~~l~~~l~~~~-~----~-vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 642 PYLLKALNQVD-S----P-VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHCTT-S----H-HHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhcccc-H----H-HHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 99999986433 1 1 2236888999999999999999999999999999976421 11123333344333 34688
Q ss_pred chhhhhhhhHHHHHHhhcCCC----------cHHHHHHHHHHHHhhccccc-----ccchhHhHHHHHHHhhCCC----C
Q 000194 1021 TLDEHMHLLLPALIRLFKVDA----------PVDIRRAAIETLTRLIPRVQ-----VTGHISSLVHHLKLVLDGK----N 1081 (1880)
Q Consensus 1021 ~~~~~~~~ilp~l~~~l~~~~----------~~~vr~~ai~~l~~l~~~~~-----~~~~~~~ii~~l~~~l~~~----~ 1081 (1880)
.+.+|+..++|.+.+.+.... ...+|..++++++.++.... +.+|++.+++.+.+.+.+. +
T Consensus 716 ~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~ 795 (861)
T 2bpt_A 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSE 795 (861)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCc
Confidence 899999999999999886421 14689999999999987654 7889999999999988653 7
Q ss_pred HHHHHHHHHHHHHHHHHh-ccccccchh-HHHHHHHh
Q 000194 1082 DELRKDAVDALCCLAHAL-GEDFTIFIP-SIHKLLLK 1116 (1880)
Q Consensus 1082 ~~l~~~al~~L~~l~~~~-g~~f~~fip-~i~~~l~~ 1116 (1880)
.++|..|+.+|+.|+..+ |.+|.+|++ .+.+.+.+
T Consensus 796 ~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~ 832 (861)
T 2bpt_A 796 DATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIK 832 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHH
Confidence 889999999999999999 999999998 77777665
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=1.1e-30 Score=375.90 Aligned_cols=958 Identities=13% Similarity=0.137 Sum_probs=615.5
Q ss_pred HHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChH-----HHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhH
Q 000194 23 LDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGE-----AFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDE 95 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~-----~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~ 95 (1880)
+.++..+++.|.+.....|. |+..|..++. .+.++ ....+++++.+.+.+.++ ++++..|.+|+.++..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~----~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIG----ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHH----HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 34555666666666554443 5666665553 33332 245678888888888887 5888999999999999
Q ss_pred hhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHH
Q 000194 96 LIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVL 175 (1880)
Q Consensus 96 Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~ 175 (1880)
++...+....+....+.+.+...+. +.+..|++.|+.+++.++...+. ++++..++.+++.|..+.++..|.+|+.
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~-~~~~~vR~~a~~al~~l~~~~~~---~~~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGN---IVFVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 9865322223355666677777775 55789999999999999986332 2334445556666654433567888999
Q ss_pred HHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccC-----
Q 000194 176 ILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGR----- 250 (1880)
Q Consensus 176 ~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~----- 250 (1880)
+++.++...|..|.+|++.+++.++..+.|+++.||+.|..+++.+.+.... ....++..+++.+...+..
T Consensus 237 ~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~l~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK----EVYPHVSTIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC----CCHHHHHHHHHHHTTCCCCC----
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH----HHHHhHHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999988764331 1123556666666554421
Q ss_pred -------------------------------CCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000194 251 -------------------------------NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1880)
Q Consensus 251 -------------------------------~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~ 299 (1880)
...|++|.+|+.+++.++...++.+.++++++++.++..+.++++.||.
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~ 392 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA 392 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHH
Confidence 0126789999999999998777778889999999888888889999999
Q ss_pred HHHHHhHhHhhhC------------------hhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhh
Q 000194 300 SITSLLPRIAHFL------------------RDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHY 359 (1880)
Q Consensus 300 ~~~~~i~~la~~~------------------~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~ 359 (1880)
+++.+++.+.... +....+.+++.+++.+...++++. .|..++.++|.++...++.+.+|
T Consensus 393 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~ 472 (1230)
T 1u6g_C 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH 472 (1230)
T ss_dssp HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG
T ss_pred HHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHH
Confidence 9999988876532 123345677888888888887654 47889999999999888778899
Q ss_pred hhHHHHHHHHhhcCCCC--CCCchHHHHHHHHHHHhCCC-chHHHHHHHHHHHhcC--CCHH----HHHHHHHHHHhCCC
Q 000194 360 LPTITSHLREAIAPRRG--KPSLEALACVGNIARAMGPV-MEPHVRGLLDIMFSAG--LSTT----LVDALEQITVSIPS 430 (1880)
Q Consensus 360 l~~i~~~l~~~l~~~~~--~~~~~a~~~l~~la~~~g~~-~~~~l~~ll~~l~~~~--ls~~----l~~~l~~i~~~~p~ 430 (1880)
++.+++.+...+.+... ..+..++.+++.+.+..|+. |.||++.++|.++.+- -+.. ...++..+++.+.+
T Consensus 473 l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~ 552 (1230)
T 1u6g_C 473 IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRP 552 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999977643 23457888888888888875 9999999999988641 2222 23345556555432
Q ss_pred -------ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccCCCcchhh
Q 000194 431 -------LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFKGHDLLEF 502 (1880)
Q Consensus 431 -------l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~~~~~~l~~~ 502 (1880)
-.....+.++..+...+... ..+.+....|+.++|.+ ...|..+.++
T Consensus 553 ~~~~~~~~~~~~~~~ll~~ll~~l~~~-------------------------d~~~~vr~~a~~~lg~L~~~~g~~~~~~ 607 (1230)
T 1u6g_C 553 LDQPSSFDATPYIKDLFTCTIKRLKAA-------------------------DIDQEVKERAISCMGQIICNLGDNLGSD 607 (1230)
T ss_dssp SSSCCCCCCHHHHHHHHHHHHHHHSCS-------------------------SSCHHHHHHHHHHHHHHHHHTGGGCCTH
T ss_pred cccccccchHHHHHHHHHHHHHHHhcc-------------------------CCCHHHHHHHHHHHHHHHHHhCchhhhh
Confidence 22222334444433322110 01222445677777776 2224445555
Q ss_pred HHHHHhhhcc-CCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHH
Q 000194 503 ARDSVVLYLD-DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSI 581 (1880)
Q Consensus 503 v~~~~~~~l~-~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~ 581 (1880)
+..++..+.+ -.++.+|..++.++..+...... ......+..+++.|.. .+.++++.+|..+
T Consensus 608 ~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~----------------~~~~~~~~~i~~~L~~-~l~~~~~~~r~~a 670 (1230)
T 1u6g_C 608 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLK----------------IDLRPVLGEGVPILAS-FLRKNQRALKLGT 670 (1230)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSC----------------CCCHHHHHHHHHHHHH-HTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhCccc----------------cchHHHHHHHHHHHHH-HHHhCCHHHHHHH
Confidence 5544332221 12456888888877776532110 0124567777776655 5778999999999
Q ss_pred HHhccCC-CCcchhhccHhhHHHH---HHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChH
Q 000194 582 FSSLYGN-RGFDDFLAQADCLSAI---FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1880)
Q Consensus 582 l~~l~~~-~~fd~~L~~~~~l~~L---~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1880)
+.+++.- ......+....+.+.+ ...++|++.+++..++.+|+.+...+|..+.++...++..++..+... .
T Consensus 671 ~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~-~--- 746 (1230)
T 1u6g_C 671 LSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP-L--- 746 (1230)
T ss_dssp HHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCT-T---
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCc-c---
Confidence 8888410 0000001111222222 234578899999999999999999998766555555554444444433 1
Q ss_pred hHHHHHHHHHHHHHhCcccc--cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHH
Q 000194 658 CREESAKLLGCLIRNCERLI--RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIV 735 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~--~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~ 735 (1880)
.+..+...+..+.+.....- .+.++.+++.++..+..+........+...+..++|.+....|.... .+++.++
T Consensus 747 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~~ 822 (1230)
T 1u6g_C 747 LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP----AVVGQFI 822 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH----HHHTTTT
T ss_pred cchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH----HHHHHHH
Confidence 11222333333332211111 34677777777654432110001345567778899999888777655 3444455
Q ss_pred HHHhcC-CchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccc
Q 000194 736 EALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 736 ~~l~d~-~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
..+++. .+...+..++.++|.+....+ +.+ +|++.+.+...+.++ ++.||.++..++|.++.-.
T Consensus 823 ~~~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~---~~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~--------- 887 (1230)
T 1u6g_C 823 QDVKNSRSTDSIRLLALLSLGEVGHHID--LSG---QLELKSVILEAFSSP-SEEVKSAASYALGSISVGN--------- 887 (1230)
T ss_dssp TTTTTTTCCHHHHHHHHHHHHHHHHHSC--CCS---CTHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHT---------
T ss_pred HHhCCCCccHHHHHHHHHHHHHhcccCC--Ccc---cccHHHHHHHHhCCC-CHHHHHHHHHHhHHHhccC---------
Confidence 555432 244567788888888755432 222 478999999999764 8999999999999886200
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCC-CC
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL-GC 893 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~-~~ 893 (1880)
...+++.+++.+.+.. ..+.....++..++...+. ..
T Consensus 888 ----------------------------------------~~~~lp~ll~~l~~~~--~~~~~~l~al~e~i~~~~~~~~ 925 (1230)
T 1u6g_C 888 ----------------------------------------LPEYLPFVLQEITSQP--KRQYLLLHSLKEIISSASVVGL 925 (1230)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHSCG--GGHHHHHHHHHHHHHSSCSTTT
T ss_pred ----------------------------------------HHHHHHHHHHHHhccc--hhhHHHHHHHHHHHhcCChhhH
Confidence 0223455566665432 2345678888888876543 34
Q ss_pred CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000194 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1880)
Q Consensus 894 ~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1880)
.||.++|.+.++..+...++..|..+...+|.++.... ..++| .+.+.+...+ + .....++.++..+
T Consensus 926 ~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~---~~l~p----~l~~~l~~~~-~-----~~R~~~~~~l~~~ 992 (1230)
T 1u6g_C 926 KPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP---ETLLP----RLKGYLISGS-S-----YARSSVVTAVKFT 992 (1230)
T ss_dssp HHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG---GGTHH----HHTTTSSSSC-H-----HHHHHHHHHTGGG
T ss_pred HhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh---HHHHH----HHHHHhcCCC-H-----HHHHHHHHHHHHH
Confidence 57888888888877766566688888888888775532 23334 3444444332 0 0111333333333
Q ss_pred HHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHH-HhcchhhhhhhhHHHHHHhhcC-------------
Q 000194 974 CLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEV-FGGTLDEHMHLLLPALIRLFKV------------- 1039 (1880)
Q Consensus 974 ~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~-~g~~~~~~~~~ilp~l~~~l~~------------- 1039 (1880)
....+..+.+|++.++|.++..|++.+.. -|..+...+.++.. -+..+.+|+..++|.+......
T Consensus 993 ~~~~~~~~~~~l~~~~~~ll~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~ 1071 (1230)
T 1u6g_C 993 ISDHPQPIDPLLKNCIGDFLKTLEDPDLN-VRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPF 1071 (1230)
T ss_dssp CCSSCCTHHHHHHHHSTTTHHHHSSSSTH-HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTE
T ss_pred HccCchhhHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCc
Confidence 33334567788999999999999765322 13334444444333 3445678888899988776521
Q ss_pred ----CCcHHHHHHHHHHHHhhcccc-cccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhccccccchhHHHHHH
Q 000194 1040 ----DAPVDIRRAAIETLTRLIPRV-QVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114 (1880)
Q Consensus 1040 ----~~~~~vr~~ai~~l~~l~~~~-~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~fip~i~~~l 1114 (1880)
+...++|+.|.+++..+...- +-.+ +..++..++.-+.+ +.++|.-+...|..|+..-......+++.+...+
T Consensus 1072 k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~-~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 1149 (1230)
T 1u6g_C 1072 KHTVDDGLDIRKAAFECMYTLLDSCLDRLD-IFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPL 1149 (1230)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHSSCSSSC-HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHcccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 123489999999999997641 1111 34445555567765 5899999999999998876655555555555544
Q ss_pred H
Q 000194 1115 L 1115 (1880)
Q Consensus 1115 ~ 1115 (1880)
.
T Consensus 1150 ~ 1150 (1230)
T 1u6g_C 1150 R 1150 (1230)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=4.1e-30 Score=358.24 Aligned_cols=755 Identities=13% Similarity=0.133 Sum_probs=529.1
Q ss_pred CCHHHHHHHHHHH-cCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhh
Q 000194 21 GSLDALNRILADL-CTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELI 97 (1880)
Q Consensus 21 ~~~~~~~~l~~~l-~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li 97 (1880)
|.+..+.+++.++ .+++.+.++ |...|..+-. ++...|+..+.+. +.++ .+...|..|...+...+
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~--------~~~~~~~~~l~~i---l~~~~~~~~vR~~A~~~lk~~i 69 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSN--------DNFLQFAGLSSQV---LIDENTKLEGRILAALTLKNEL 69 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHH--------HCHHHHHHHHHHH---HTCTTSCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHh--------hCHHHHHHHHHHH---HhCCCCChHHHHHHHHHHHhhc
Confidence 6677889999999 888655554 6555554321 1123344334332 2233 46777887777777776
Q ss_pred ccccC-------------cchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhhhc
Q 000194 98 DVALG-------------ENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG--GAMTADEVEFQVKMALDWLR 162 (1880)
Q Consensus 98 ~~~~~-------------~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~--g~~~~~~v~~~~~~~~~~l~ 162 (1880)
...-. -.......+-+.|...+. +.+..++..++.+++.++... +..|+++++.+ ++.+.
T Consensus 70 ~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L----~~~l~ 144 (861)
T 2bpt_A 70 VSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIELPHGAWPELMKIM----VDNTG 144 (861)
T ss_dssp CCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHH----HHHTS
T ss_pred cCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHHHhhCcccccHHHHHHH----HHHHh
Confidence 43100 001111122234444453 457899999999999998862 23677765554 44555
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCcc---chhchHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTV---FNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWY 237 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~---l~~~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~ 237 (1880)
+++++..|++|+.+++.+++..+.. +.++++.+++.+..++.|+ ++.||.+|.++++.++..+...... ... .
T Consensus 145 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~-~ 222 (861)
T 2bpt_A 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMER-EGE-R 222 (861)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS-HHH-H
T ss_pred cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccC-hhH-H
Confidence 4436788999999999999876543 6789999999999999998 8999999999999876654421110 001 1
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~--- 313 (1880)
..+++.+...+.++ +++++++++.+|+.++...++.+.+++. .+++.++..+.+.++.||..++..+..++....
T Consensus 223 ~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 301 (861)
T 2bpt_A 223 NYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 22444444445554 4889999999999999988888889999 899988888889999999999999998886531
Q ss_pred -------------hhHHHHHHHHHHHHHHHhhcCC---------CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhh
Q 000194 314 -------------DRFVTNYLKICMNHILTVLRIP---------AERDSGFIALGEMAGALDGELFHYLPTITSHLREAI 371 (1880)
Q Consensus 314 -------------~~f~~~yl~~~~~~Ll~~L~~~---------~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l 371 (1880)
..+...++..++|.++..+... ..|..|..+++.++...|+. .++.+++.+.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l 378 (861)
T 2bpt_A 302 YELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---ILEPVLEFVEQNI 378 (861)
T ss_dssp HHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHT
T ss_pred hhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HHHHHHHHHHHHc
Confidence 1245567788999998888642 13567888888888888753 4566777777777
Q ss_pred cCCCCCCCchHHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000194 372 APRRGKPSLEALACVGNIARAMG-PVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1880)
Q Consensus 372 ~~~~~~~~~~a~~~l~~la~~~g-~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1880)
.+.+.+.+..++.++|.+++..+ ..+.++++.+++.+
T Consensus 379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l------------------------------------------ 416 (861)
T 2bpt_A 379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI------------------------------------------ 416 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH------------------------------------------
T ss_pred CCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH------------------------------------------
Confidence 54433334567777777665433 22333333332221
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhh
Q 000194 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLV 530 (1880)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~ 530 (1880)
.+.+.++++.||.+|+.+++++.
T Consensus 417 ---------------------------------------------------------~~~l~d~~~~vr~~a~~~l~~l~ 439 (861)
T 2bpt_A 417 ---------------------------------------------------------LNLMNDQSLQVKETTAWCIGRIA 439 (861)
T ss_dssp ---------------------------------------------------------HHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HHHcCCCcHHHHHHHHHHHHHHH
Confidence 22344557788887766655543
Q ss_pred hccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC
Q 000194 531 ANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND 610 (1880)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D 610 (1880)
..... .+. .. +++ +.+++.++..++|
T Consensus 440 ~~~~~------------------------------------------------~~~-~~---~~~--~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 440 DSVAE------------------------------------------------SID-PQ---QHL--PGVVQACLIGLQD 465 (861)
T ss_dssp HHHGG------------------------------------------------GSC-TT---TTH--HHHHHHHHHHHTS
T ss_pred HHhhh------------------------------------------------hcC-CH---HHH--HHHHHHHHHHhcc
Confidence 21100 000 00 011 2345666666667
Q ss_pred CCHhHHHHHHHHHHhhhcCC----cccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHH
Q 000194 611 EDFDVREYAISVAGRLSEKN----PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHK 686 (1880)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~----p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~ 686 (1880)
+ +.||..|...++.+++.. +..+.|++..++..++..+...+.+...|..++.+++.++...+..+.||+..+++
T Consensus 466 ~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~ 544 (861)
T 2bpt_A 466 H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544 (861)
T ss_dssp C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHH
Confidence 5 788888888888877653 34566888877766666665432346789999999999999999888999999999
Q ss_pred HHHHHhccCCCC----------CCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 687 ALVARLLEGTGI----------NANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 687 ~ll~~l~~~~~~----------~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
.++..+.+.... +....++..++.+++.++...|..+.||++.++|.++..+++..+..+|+.++.+++.
T Consensus 545 ~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHH
Confidence 988887642000 0134567788999999999999999999999999999999876322789999999999
Q ss_pred HHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCC
Q 000194 757 VVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836 (1880)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1880)
++...|..+.||. |.+++.++..++. .++.+|..++.++|.+...-.
T Consensus 625 l~~~~~~~~~~~l--~~i~~~l~~~l~~-~~~~vr~~a~~~l~~l~~~~~------------------------------ 671 (861)
T 2bpt_A 625 LAASLGKGFEKYL--ETFSPYLLKALNQ-VDSPVSITAVGFIADISNSLE------------------------------ 671 (861)
T ss_dssp HHHHHGGGGHHHH--HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHHHHTG------------------------------
T ss_pred HHHHHhhhHHHHH--HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHhc------------------------------
Confidence 9999888777774 7899999999964 356799999998887641000
Q ss_pred cccccccCCCCCCCcccchHHHHHHHHHHhcCCC-hhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCC---
Q 000194 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPS-LASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD--- 912 (1880)
Q Consensus 837 ~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s-~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~--- 912 (1880)
... .-|...+++.+++.|++++ .......++.++..++...|..+.||++.++|.++..+....
T Consensus 672 -----------~~~-~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 739 (861)
T 2bpt_A 672 -----------EDF-RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENG 739 (861)
T ss_dssp -----------GGG-HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSS
T ss_pred -----------hhc-cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCC
Confidence 000 1144677888889888763 245677899999999999999999999999999999887532
Q ss_pred --------cchhHHHHHHHHHHHHHHH---HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHh-hhh
Q 000194 913 --------DYLKDYITWKLGTLVSIVR---QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL-NDE 980 (1880)
Q Consensus 913 --------~~~~~~~~~~l~~lv~~~~---~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l-~~~ 980 (1880)
..+|..++..++.++..++ ..+.+|++.+++.+.......+.+ .... ....++.+++.++.++ |.+
T Consensus 740 d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~-~~~~-vr~~a~~~l~~l~~~~~g~~ 817 (861)
T 2bpt_A 740 TLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLY-SEDA-TSRAAVGLIGDIAAMFPDGS 817 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHH-TSHH-HHHHHHHHHHHHHHHCTTST
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccC-CcHH-HHHHHHHHHHHHHHHcCCch
Confidence 2367888888888888777 789999999999998776431000 0011 2237899999999999 999
Q ss_pred hhccch-hhHHHHHHhccc
Q 000194 981 FRTHLP-VILPCCIQVLSD 998 (1880)
Q Consensus 981 f~~yl~-~l~p~ll~~l~~ 998 (1880)
|.+|++ .++|.+++.++.
T Consensus 818 ~~~~~~~~~~~~ll~~l~~ 836 (861)
T 2bpt_A 818 IKQFYGQDWVIDYIKRTRS 836 (861)
T ss_dssp TGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHhh
Confidence 999999 999999999874
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.2e-30 Score=360.91 Aligned_cols=655 Identities=16% Similarity=0.178 Sum_probs=471.0
Q ss_pred CCHHHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000194 21 GSLDALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1880)
Q Consensus 21 ~~~~~~~~l~~~l~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~ 99 (1880)
.-++++..+++.+.+.+. .++.|...|..+++........+.+.+.++.+...+.+++++++...|.+|+.++..++..
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 457789999999988754 3445777888888665433322222344667788888888889999999999999988765
Q ss_pred ccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000194 100 ALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1880)
Q Consensus 100 ~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~ 179 (1880)
..+.....+..+.+.+...+. ++|.++++.|+++|++++...+.....+++..++.++..++ +.++..|..|+.+|..
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-DQDENVALEACEFWLT 282 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHH
Confidence 321112223344455555553 56889999999999999987433333345555555555554 4566789999999999
Q ss_pred HHhh--cCccchhchHHHHHHHHHHh-----------cC-----------CchhHHHHHHHHHHHHHHHHhhhchhhHHH
Q 000194 180 MAEN--ASTVFNVHVAEFVDAIWVAL-----------RD-----------PTLAVRERAVEALRACLRVIEKRETRWRVQ 235 (1880)
Q Consensus 180 la~~--~p~~l~~~l~~i~~~i~~~l-----------~D-----------~~~~VR~aA~~al~~~~~~i~~r~~~~~~~ 235 (1880)
+++. +...+.+++..++|.++..+ .| .+..||.+|..+++.+.....+ .
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-------~ 355 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-------E 355 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-------G
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-------H
Confidence 9875 33457889999999999988 45 4457899999999988765531 2
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000194 236 WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1880)
Q Consensus 236 ~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~ 315 (1880)
.+..+++.+...+.++ +|.+|++|+.+++.+.+++++.+.++++++++.++..+++.++.||.+++.+++.++.+.+..
T Consensus 356 ~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 434 (852)
T 4fdd_A 356 LLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 434 (852)
T ss_dssp GHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 3456677777777776 599999999999999998888888999999999999999999999999999999999876544
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 316 FVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
....|++.+++.++..|.+.. .|..|+.+++.++...++.+.||++.+++.+...+.....+....+++|++.++...
T Consensus 435 ~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~ 514 (852)
T 4fdd_A 435 PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514 (852)
T ss_dssp CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 445688999999999997543 578999999999999999999999999999999886443222235789999999999
Q ss_pred CCCc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCc
Q 000194 394 GPVM--EPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQ 471 (1880)
Q Consensus 394 g~~~--~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1880)
|+.+ .+|++.++|.+++. +. .+ ..
T Consensus 515 ~~~~~~~~~~~~l~p~l~~~---------~~-------------------~l----~d---------------------- 540 (852)
T 4fdd_A 515 GHHLNKPEYIQMLMPPLIQK---------WN-------------------ML----KD---------------------- 540 (852)
T ss_dssp GGGGCCHHHHHHHHHHHHHH---------HH-------------------HS----CT----------------------
T ss_pred hhhhccHHHHHHHHHHHHHH---------HH-------------------hc----cc----------------------
Confidence 9866 35888888876631 00 00 00
Q ss_pred cccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCcccccc
Q 000194 472 QVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRT 550 (1880)
Q Consensus 472 ~~~~~~~~~~~~~Al~~L~~~~-~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~ 550 (1880)
+ ++ ....++++++.+. .-|..+.||+..++.. |..++.
T Consensus 541 ---~--~~-~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~----------------~~~~l~------------------- 579 (852)
T 4fdd_A 541 ---E--DK-DLFPLLECLSSVATALQSGFLPYCEPVYQR----------------CVNLVQ------------------- 579 (852)
T ss_dssp ---T--CT-THHHHHHHHHHHHHHHGGGGHHHHHHHHHH----------------HHHHHH-------------------
T ss_pred ---c--cH-HHHHHHHHHHHHHHHHhHhHHHHHHHHHHH----------------HHHHHH-------------------
Confidence 0 00 1112344443331 0123334444443211 111110
Q ss_pred ccchhHHHHHHHHH-HHHH----HhcCCChhHHHHHHHhccC-----CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHH
Q 000194 551 GGKRRRLIEELVEK-LLIA----AVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620 (1880)
Q Consensus 551 ~~~~~~~~~~vl~~-Ll~~----~~~d~~~~vR~~~l~~l~~-----~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~ 620 (1880)
..+.+ .... ...+++.++|..++..++. ...|.+++..+.+++.++.+++|++..||+.++
T Consensus 580 ---------~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~ 650 (852)
T 4fdd_A 580 ---------KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 650 (852)
T ss_dssp ---------HHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHH
T ss_pred ---------HHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHH
Confidence 00000 0000 0122345555544444321 245566664557899999999999999999999
Q ss_pred HHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCC
Q 000194 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINA 700 (1880)
Q Consensus 621 ~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~ 700 (1880)
.+++.++..++..+.|++..++..++..+.. ++...|..|++++|.++...+..+.||+..+++.+++.++++. .
T Consensus 651 ~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~--~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~---~ 725 (852)
T 4fdd_A 651 ALLGDLTKACFQHVKPCIADFMPILGTNLNP--EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN---T 725 (852)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT--TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS---C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC---C
Confidence 9999999999999999998877666666633 4678899999999999999988899999999999999998652 3
Q ss_pred ChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHH
Q 000194 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780 (1880)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~ 780 (1880)
...++.+++.++|.|+..+++.+.||++++++.++..|.+..+.+.|+.|..+|+.++...+.. ..+.+...+-.
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~-----~~~~~~~~~~~ 800 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG-----VIQDFIFFCDA 800 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGG-----TGGGHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHh-----HHHHHHHHHHH
Confidence 6689999999999999998888999999999999999987777889999999999999875443 23444544444
Q ss_pred HhcC-CCCHHHHHHHHHHHH
Q 000194 781 MLNG-ELVWSTRREVLKVLG 799 (1880)
Q Consensus 781 ~L~~-~~~~~vr~~~l~~lg 799 (1880)
+.+- +..++++....+++.
T Consensus 801 ~~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 801 VASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 3332 235677776666653
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.98 E-value=2.4e-28 Score=341.10 Aligned_cols=787 Identities=13% Similarity=0.098 Sum_probs=521.5
Q ss_pred HHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccC-
Q 000194 26 LNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVALG- 102 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~- 102 (1880)
+.+++..+.+++.+.++ |...|..+- .+....++..|.+.+ .++ .+...|..|..++...+.....
T Consensus 3 l~~~L~~~~s~d~~~r~~A~~~L~~~~--------~~~~~~~~~~L~~~l---~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 3 LITILEKTVSPDRLELEAAQKFLERAA--------VENLPTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH--------hcChhhHHHHHHHHH---hCCCCCHHHHHHHHHHHHHhccccchH
Confidence 56788888888655554 665555532 222334444444322 232 4567788888888776542100
Q ss_pred ----------c-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCCchhHHHHHHHHHHhhhcCCC-cch
Q 000194 103 ----------E-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDR-VEY 168 (1880)
Q Consensus 103 ----------~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~--~g~~~~~~v~~~~~~~~~~l~~~~-~~~ 168 (1880)
. ........-+.|...+. ..+..+ ..++.+++.++.. +...++++++..+. .+.++. ++.
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~-~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~----~l~~~~~~~~ 145 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLG-TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVA----NVTNPNSTEH 145 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTT-TCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHH----HHHCTTCCHH
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhC-CCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHH----HHhCCCCCHH
Confidence 0 11111122233444553 446667 9999999999886 22567777666554 344432 667
Q ss_pred hHHHHHHHHHHHHhhc-CccchhchHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 169 RRFAAVLILKEMAENA-STVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
.|.+|+.+++.+++.. |..+.++++.+++.+..++.|+ ++.||..|.++++.++..+...- ....+...+++.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~--~~~~~~~~il~~l~ 223 (876)
T 1qgr_A 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF--DKESERHFIMQVVC 223 (876)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH--TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHH
Confidence 8999999999999875 5678899999999999999987 68999999999998765443210 01112223555555
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC 324 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~ 324 (1880)
..+.+. +.+++.+++.+|+.++...++.+.+++. .+++.++....+.++.||..++..+..++........+. ...
T Consensus 224 ~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~--~~~ 300 (876)
T 1qgr_A 224 EATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEA--SEA 300 (876)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhh--ccc
Confidence 555554 4788999999999999988888999999 899999888888899999999999988876432100000 000
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhc-------CCCCCCCchHHHHHHHHHHHhCCCc
Q 000194 325 MNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIA-------PRRGKPSLEALACVGNIARAMGPVM 397 (1880)
Q Consensus 325 ~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~-------~~~~~~~~~a~~~l~~la~~~g~~~ 397 (1880)
++ . .....+. ......++++.+++.+.+.+. +...+.+..+..|++.++..+|+.+
T Consensus 301 ~~---~--~~~~~~~------------~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~ 363 (876)
T 1qgr_A 301 AE---Q--GRPPEHT------------SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI 363 (876)
T ss_dssp HH---H--SSCCSSC------------CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG
T ss_pred cc---c--CCCccch------------hHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh
Confidence 00 0 0000000 000011222333333333331 2333445677888888888888765
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccC
Q 000194 398 EPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLN 477 (1880)
Q Consensus 398 ~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1880)
.+.+-..+...+..
T Consensus 364 ~~~~l~~l~~~l~~------------------------------------------------------------------ 377 (876)
T 1qgr_A 364 VPHVLPFIKEHIKN------------------------------------------------------------------ 377 (876)
T ss_dssp HHHHHHHHHHHTTC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHccC------------------------------------------------------------------
Confidence 55433333333310
Q ss_pred CchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH
Q 000194 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1880)
Q Consensus 478 ~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1880)
+++.+|.+|..+++.+.... ....
T Consensus 378 ------------------------------------~~~~~r~~a~~~l~~i~~~~--------------------~~~~ 401 (876)
T 1qgr_A 378 ------------------------------------PDWRYRDAAVMAFGCILEGP--------------------EPSQ 401 (876)
T ss_dssp ------------------------------------SSHHHHHHHHHHHHHTSSSS--------------------CHHH
T ss_pred ------------------------------------CChHHHHHHHHHHHHHHcCC--------------------CHHH
Confidence 13445555554444432100 0000
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc--c
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV--L 635 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v--~ 635 (1880)
+. +++ +.+++.++..++|+++.||..|+.++++++...+..+ .
T Consensus 402 ~~---------------------------------~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 402 LK---------------------------------PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HH---------------------------------HHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HH---------------------------------HHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 11 111 1346667777889999999999999999998876543 4
Q ss_pred HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc--------------ccccCchHHHHHHHHHHhccCCCCCCC
Q 000194 636 PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--------------RLIRPYIAPIHKALVARLLEGTGINAN 701 (1880)
Q Consensus 636 p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--------------~~~~py~~~il~~ll~~l~~~~~~~~~ 701 (1880)
|++..++..++..+.+ .++.|+.++++|+.+++.++ ..+.||++.+++.+++.+.+... ..
T Consensus 447 ~~l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~ 521 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQ 521 (876)
T ss_dssp TTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CS
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--ch
Confidence 6777777777776643 37789999999999998754 45889999999999999886421 24
Q ss_pred hhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcC----------Cc----hhhHHHHHHHHHHHHhhcC-cccc
Q 000194 702 NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG----------AA----VTKREVAVSTLGQVVQSTG-YVIT 766 (1880)
Q Consensus 702 ~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~----------~~----~~~r~~Al~~Lg~l~~~~~-~~i~ 766 (1880)
..++..++.+++.++...|..+.+|+..++|.+++.+.+. .+ .+.|..++.+++.++...| ..+.
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 601 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL 601 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh
Confidence 5788889999999999999999999999999999988641 11 2357788999999999998 7788
Q ss_pred cCCcchHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCC
Q 000194 767 PYNEYPQLLGLLLKMLNGELV-WSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWP 845 (1880)
Q Consensus 767 p~~~~p~ll~~Ll~~L~~~~~-~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 845 (1880)
||. |.+++.+++.+++... +.+|..++.+++.+.....
T Consensus 602 ~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~--------------------------------------- 640 (876)
T 1qgr_A 602 QIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG--------------------------------------- 640 (876)
T ss_dssp TTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG---------------------------------------
T ss_pred HHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH---------------------------------------
Confidence 885 7899999999976531 4789999999887642100
Q ss_pred CCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcC--CcchhHHHHHHH
Q 000194 846 SFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC--DDYLKDYITWKL 923 (1880)
Q Consensus 846 ~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~--~~~~~~~~~~~l 923 (1880)
..... |...+++.|+..|++.........++.++..+++.+|..+.||++.+++.++..+... +..++..++..+
T Consensus 641 --~~~~~-~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l 717 (876)
T 1qgr_A 641 --GEFLK-YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVF 717 (876)
T ss_dssp --GGGGG-GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHH
T ss_pred --hhHHH-HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHH
Confidence 00012 2345678888888876334566789999999999999888899999999999999873 456899999999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCccc-----ccccchhHHHHHHHHHHHhh----------hhhhccchhh
Q 000194 924 GTLVSIVRQHIRKYLQELFSLISELWSSFSLPATN-----RTYRGLPVLHLVQQLCLALN----------DEFRTHLPVI 988 (1880)
Q Consensus 924 ~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~-----~~~~~~~~l~~i~~l~~~l~----------~~f~~yl~~l 988 (1880)
|.++..+|..+.+|++.+++.+.........+... .......++.++..++..++ ..|.||++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 99999999999999999999998776533100000 00122356777777777776 3689999999
Q ss_pred HHHHHHhccccc-ccCchhhHHHHHHHHH-HHhc-chhhh-hhhhHHHHHH-hhcCCCcHHHHHHHHHHHHhhcc
Q 000194 989 LPCCIQVLSDAE-RCNDYTYVLDILHTLE-VFGG-TLDEH-MHLLLPALIR-LFKVDAPVDIRRAAIETLTRLIP 1058 (1880)
Q Consensus 989 ~p~ll~~l~~~~-~~~~~~~~~~il~~l~-~~g~-~~~~~-~~~ilp~l~~-~l~~~~~~~vr~~ai~~l~~l~~ 1058 (1880)
++.+.....+.+ ...-|..+..++..+. .+|. .+.+| ...++|.++. .+.. ....+|..|..++|.+++
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~-~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRS-KTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhc-CCHhHHHHHHHHHHHHHH
Confidence 988877765431 1111333444444433 3455 56666 4567888887 7744 357899999999998864
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.92 E-value=1.2e-22 Score=269.83 Aligned_cols=574 Identities=14% Similarity=0.057 Sum_probs=388.1
Q ss_pred CCCHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhc
Q 000194 20 GGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELID 98 (1880)
Q Consensus 20 ~~~~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~ 98 (1880)
+.+...+..+++.|++++...|. |++.|..++. .+.++ +..+++...+.+.+ +++...|..+..++..+..
T Consensus 6 ~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~----~~~~~---~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~ 77 (588)
T 1b3u_A 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIAL----ALGVE---RTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTT 77 (588)
T ss_dssp TTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHH----HSCHH---HHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSG
T ss_pred CCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHH----HhCHH---HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHh
Confidence 34556689999999998765554 7777776652 33333 23345566665655 5677788888888887765
Q ss_pred cccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHHHHHhhhcCCCcchhHHHHHHHH
Q 000194 99 VALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVEYRRFAAVLIL 177 (1880)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~~~R~aA~~~l 177 (1880)
..++. .....+.+.|..++. +.|..|+..|+++++.++..- ..+.+.. .++.+.+ +..+.++..|.+|+.++
T Consensus 78 ~~~~~--~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~---~~~~~~~~l~~~l~~-l~~~~~~~~R~~a~~~l 150 (588)
T 1b3u_A 78 LVGGP--EYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLVKR-LAGGDWFTSRTSACGLF 150 (588)
T ss_dssp GGTSG--GGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHHHH-HHTCSSHHHHHHHGGGH
T ss_pred ccCcH--HHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHH-HhcCCCcHHHHHHHHHH
Confidence 53221 223345556666653 568899999999999998752 2232322 2333322 22445678899999999
Q ss_pred HHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000194 178 KEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1880)
Q Consensus 178 ~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 257 (1880)
+.++...+.. ..+.+++.+...+.|+++.||.+|+.+++.+...... ..+...++|.+...+.++ ++.+|
T Consensus 151 ~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~-~~~vr 220 (588)
T 1b3u_A 151 SVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL------DNVKSEIIPMFSNLASDE-QDSVR 220 (588)
T ss_dssp HHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH------HHHHHTHHHHHHHHHTCS-CHHHH
T ss_pred HHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH------HhHHHHHHHHHHHHhcCC-cHHHH
Confidence 9999887753 4677888888999999999999999999988765431 234566777777777666 47899
Q ss_pred HHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000194 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1880)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1880)
.+|+.+++.+....++. ...+.+.+.+....++++..||.+++.+++.++...+.. .+.+.+++.+...++++.
T Consensus 221 ~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~ 295 (588)
T 1b3u_A 221 LLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEA 295 (588)
T ss_dssp TTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcH
Confidence 99999999998754421 233445666667778889999999999999998754332 245677888888887654
Q ss_pred -CcchHHHHHHHHHhhchhhhh--hhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q 000194 337 -ERDSGFIALGEMAGALDGELF--HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGL 413 (1880)
Q Consensus 337 -~r~~a~~alg~la~~v~~~~~--p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~l 413 (1880)
.|..|+.++|.++...|.... ++++.+++.+...+.+.+..++..++.+++.++..+|+.. ..+.+
T Consensus 296 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l--------- 364 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEHL--------- 364 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHHT---------
T ss_pred HHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHHH---------
Confidence 488999999999998886533 5677777777777755443334455555555555544311 01111
Q ss_pred CHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccc
Q 000194 414 STTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFN 493 (1880)
Q Consensus 414 s~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~ 493 (1880)
T Consensus 365 -------------------------------------------------------------------------------- 364 (588)
T 1b3u_A 365 -------------------------------------------------------------------------------- 364 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCC
Q 000194 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1880)
Q Consensus 494 ~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1880)
...+...+.+++++||.+|..++..+..... .......+++.|.. ...|+
T Consensus 365 ----------~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-------------------~~~~~~~~lp~l~~-~~~d~ 414 (588)
T 1b3u_A 365 ----------LPLFLAQLKDECPEVRLNIISNLDCVNEVIG-------------------IRQLSQSLLPAIVE-LAEDA 414 (588)
T ss_dssp ----------HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-------------------HHHHHHHHHHHHHH-HHTCS
T ss_pred ----------HHHHHHHhCCCchHHHHHHHHHHHHHHHhcC-------------------HHHHHHHHHHHHHH-HhcCC
Confidence 1122233445566777776666555543110 01123444554444 35788
Q ss_pred ChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcC
Q 000194 574 DVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQS 652 (1880)
Q Consensus 574 ~~~vR~~~l~~l~~~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~ 652 (1880)
++.+|..++.++..- ..+......+.+++.++..++|++..||..|+..++.++...+... ....+...+..+..+
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~llp~l~~~~~~ 491 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPKVLAMSGD 491 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH---HHHHTHHHHHHTTTC
T ss_pred CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhhC
Confidence 888888887776410 0001111124578888999999999999999999999987654321 122233334444445
Q ss_pred CCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHH
Q 000194 653 SADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1880)
Q Consensus 653 ~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p 732 (1880)
++...|..++.+++.+++.++.. .|.+.+++.++..+.++ ++.|+..++.+++.++...|..+. .+.++|
T Consensus 492 -~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p 561 (588)
T 1b3u_A 492 -PNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-----VANVRFNVAKSLQKIGPILDNSTL--QSEVKP 561 (588)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-----CHHHHHHHHHHHHHHGGGSCHHHH--HHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC-----CchHHHHHHHHHHHHHHHhchhhh--HHHHHH
Confidence 67889999999999999876643 37788888999888875 789999999999999988776442 267888
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 733 LIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 733 ~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
.+.+.+.|. +.++|..|..+|+.+.
T Consensus 562 ~l~~l~~d~-d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 562 ILEKLTQDQ-DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCC-chhHHHHHHHHHHHhh
Confidence 888866665 6889999999998763
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.91 E-value=1e-21 Score=260.73 Aligned_cols=563 Identities=15% Similarity=0.098 Sum_probs=382.4
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH
Q 000194 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1880)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~ 152 (1880)
.+.+.+++++...|..|+.++..+.... |. ......+.++|.... +++.+|+..+++++|.+...-|. .++++.
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~-~~-~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALAL-GV-ERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHS-CH-HHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHh-CH-HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHHHHH
Confidence 3445677889999999999998886532 21 122334566776665 45789999999999988765221 123333
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR 231 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~-l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1880)
.++.+.. +..+.+...|.+|+..|+.++...|.. +.+ .+++.+.....++++.+|.+|+.+++.+.....
T Consensus 88 ll~~L~~-l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~---~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~----- 158 (588)
T 1b3u_A 88 LLPPLES-LATVEETVVRDKAVESLRAISHEHSPSDLEA---HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS----- 158 (588)
T ss_dssp GHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTSCHHHHHH---THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-----
T ss_pred HHHHHHH-HHhCchHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-----
Confidence 3333322 224556678999999999999887752 222 345555566678889999999998887644322
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000194 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1880)
Q Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~ 311 (1880)
......+++.+...+.++ ++++|.+++.+++.+.+..+.. .+...+++.+....++.+..||..++.+++.++..
T Consensus 159 --~~~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 159 --SAVKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp --HHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 112345556555556665 4788999999999998754421 23455667777777888899999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHH
Q 000194 312 LRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389 (1880)
Q Consensus 312 ~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~l 389 (1880)
.+... +.+.++|.+...+.++. .|..|..++|.++..+|.+ .+.+.+++.+...+.+....++..+..+++.+
T Consensus 234 ~~~~~---~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 234 LPQED---LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp SCHHH---HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHHH---HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 65432 34567777777776543 4789999999999888764 34566777777777665444456777888888
Q ss_pred HHHhCCCch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 000194 390 ARAMGPVME--PHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVM 467 (1880)
Q Consensus 390 a~~~g~~~~--~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~ 467 (1880)
+..+|+... ++++.++|.
T Consensus 309 ~~~~~~~~~~~~~~~~l~p~------------------------------------------------------------ 328 (588)
T 1b3u_A 309 CENLSADCRENVIMSQILPC------------------------------------------------------------ 328 (588)
T ss_dssp HHTSCTTTHHHHHHHTHHHH------------------------------------------------------------
T ss_pred HHHhChhhhhhHHHHHHHHH------------------------------------------------------------
Confidence 877765432 222222222
Q ss_pred CCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccc
Q 000194 468 NIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRS 547 (1880)
Q Consensus 468 ~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~ 547 (1880)
+..++.++++.||.+|+.++..+.....
T Consensus 329 ---------------------------------------l~~~l~d~~~~vR~~a~~~l~~l~~~~~------------- 356 (588)
T 1b3u_A 329 ---------------------------------------IKELVSDANQHVKSALASVIMGLSPILG------------- 356 (588)
T ss_dssp ---------------------------------------HHHHHTCSCHHHHHHHHTTGGGGHHHHC-------------
T ss_pred ---------------------------------------HHHHhcCCCHHHHHHHHHHHHHHHHHhh-------------
Confidence 1123445577788877766665542111
Q ss_pred cccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc----cHhhHHHHHHHhCCCCHhHHHHHHHHH
Q 000194 548 NRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA----QADCLSAIFAALNDEDFDVREYAISVA 623 (1880)
Q Consensus 548 ~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~----~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1880)
.......+++.++ ..+.|++++||..++.+++. +...+. .+.+++.+...++|+++.+|..++..+
T Consensus 357 ------~~~~~~~l~p~l~-~~l~d~~~~Vr~~a~~~l~~---l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l 426 (588)
T 1b3u_A 357 ------KDNTIEHLLPLFL-AQLKDECPEVRLNIISNLDC---VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYM 426 (588)
T ss_dssp ------HHHHHHHTHHHHH-HHHTCSCHHHHHHHHTTCHH---HHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ------HhHHHHHHHHHHH-HHhCCCchHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 0011233333333 34679999999999998852 211111 245678888889999999999999999
Q ss_pred HhhhcCCccc-ccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCCh
Q 000194 624 GRLSEKNPAY-VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702 (1880)
Q Consensus 624 ~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1880)
+.++...+.. +.+.+- ..+..+..+ ++..+|+.|+.+++.+++..+.. .+.+.+++.+...+.++ +.
T Consensus 427 ~~l~~~~~~~~~~~~l~----~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~-----~~ 494 (588)
T 1b3u_A 427 PLLAGQLGVEFFDEKLN----SLCMAWLVD-HVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-----NY 494 (588)
T ss_dssp HHHHHHHCGGGCCHHHH----HHHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCS-----CH
T ss_pred HHHHHHcCHHHHHHHHH----HHHHHHhcC-CcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCC-----CH
Confidence 9998755433 223332 233333334 57889999999999999876642 24566777776655543 78
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHh
Q 000194 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1880)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L 782 (1880)
.++..++.+++.++...|.. .|.+.++|.+.+.+.|. +.++|..++.+|+.++...|.... .+.+++.+..++
T Consensus 495 ~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~p~l~~l~ 567 (588)
T 1b3u_A 495 LHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEKLT 567 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhhh----HHHHHHHHHHHc
Confidence 89999999999999877653 48889999999999887 578999999999999987765321 146777777754
Q ss_pred cCCCCHHHHHHHHHHHHHHc
Q 000194 783 NGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 783 ~~~~~~~vr~~~l~~lg~lg 802 (1880)
++.++.+|..+..+++.+.
T Consensus 568 -~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 568 -QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp -TCSSHHHHHHHHHHHHHTT
T ss_pred -CCCchhHHHHHHHHHHHhh
Confidence 4668999999999988764
No 11
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.77 E-value=6e-14 Score=195.44 Aligned_cols=671 Identities=10% Similarity=0.117 Sum_probs=389.3
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhh-cC--
Q 000194 110 KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAEN-AS-- 185 (1880)
Q Consensus 110 ~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~-~p-- 185 (1880)
.+...|...+. .|.+++ |-+.|..+-.. ++|...++ +.+. ...+...|.+|...|+..... +.
T Consensus 6 ~l~~~L~~~~s--pd~~~r--Ae~~L~~~~~~-----p~~~~~L~----~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 6 TVAKFLAESVI--ASTAKT--SERNLRQLETQ-----DGFGLTLL----HVIASTNLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHHHTTS--GGGHHH--HHHHHHHHHTS-----TTHHHHHH----HHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHHHhcC--CCHHHH--HHHHHHHhhcC-----CCHHHHHH----HHHhcCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 45556666553 356666 77778776443 33433333 3332 234556788888888876644 32
Q ss_pred ---ccch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000194 186 ---TVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1880)
Q Consensus 186 ---~~l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al 261 (1880)
..+. ..-..|-..++.++.++...||...+.+++.+...- .+ .+| +.+++.+.+.+.+++ ...++|++
T Consensus 73 ~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d---~p---~~W-p~ll~~L~~~l~s~~-~~~~~~aL 144 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSD---FP---DRW-PTLLSDLASRLSNDD-MVTNKGVL 144 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH---ST---TTC-TTHHHHHHTTCCSSC-TTHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhh---Cc---cch-hHHHHHHHHHhCCCC-HHHHHHHH
Confidence 1233 244456677888887777999999998888765431 11 234 568888888887764 56899999
Q ss_pred HHHHHHHHcch------h-------hhHHHHHHHHH---HHHHHhhcc--h-h------HHHHHHHHHhHhHhhhChhhH
Q 000194 262 LAVGELLRNTG------E-------FMMSRYREVAE---IVLRYLEHR--D-R------LVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 262 ~~l~~ll~~~~------~-------~~~~~~~~i~~---~ll~~~~~~--~-~------~Vr~~~~~~i~~la~~~~~~f 316 (1880)
.++..+.+... + .+...+..+++ .+...++.. + . .++..++.++..+..+.-..+
T Consensus 145 ~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~ 224 (960)
T 1wa5_C 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEF 224 (960)
T ss_dssp HHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 99999987321 1 12222222222 222223322 1 1 223335555555544443444
Q ss_pred HHHHHHHHHHHHHHhhcCC--------CC---------cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCC-
Q 000194 317 VTNYLKICMNHILTVLRIP--------AE---------RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP- 378 (1880)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~--------~~---------r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~- 378 (1880)
.+..+...++.+...|... ++ |..++.++..++...++.+.||++.+++.+...+.......
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 4556677778777776431 11 34678899999988888889999999988877774321111
Q ss_pred ----CchHHHHHHHHHHHhC--CCch--HHHHHHHH-HHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC
Q 000194 379 ----SLEALACVGNIARAMG--PVME--PHVRGLLD-IMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSK 449 (1880)
Q Consensus 379 ----~~~a~~~l~~la~~~g--~~~~--~~l~~ll~-~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~ 449 (1880)
...++++|..+++.-. ..|. |++..++. .++ ..+.
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~-------------------------------~~m~----- 348 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIIL-------------------------------PNVT----- 348 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHH-------------------------------HHHS-----
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhH-------------------------------HhcC-----
Confidence 1245666665543110 1121 33433331 111 1110
Q ss_pred CCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHh
Q 000194 450 SHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKL 529 (1880)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l 529 (1880)
+. . +|.+ .|.+ .-.+|+++... +++...+|++|+..+..+
T Consensus 349 --~~----------------~---~d~e---------------~w~~-dp~e~i~~d~e---~~d~~s~R~aa~~~L~~l 388 (960)
T 1wa5_C 349 --LR----------------E---EDVE---------------LFED-DPIEYIRRDLE---GSDTDTRRRACTDFLKEL 388 (960)
T ss_dssp --CC----------------G---GGTT---------------TTTT-CHHHHHHHHHH---C----CHHHHHHHHHHHH
T ss_pred --CC----------------H---HHHH---------------HHhc-CHHHHHHhccC---cccccCcHHHHHHHHHHH
Confidence 00 0 0000 0000 11234444321 233457888777655444
Q ss_pred hhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC
Q 000194 530 VANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN 609 (1880)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~ 609 (1880)
..... ..++..+++-+.. .+.... .-.
T Consensus 389 ~~~~~--------------------~~v~~~~l~~i~~-------------~l~~~~--------------------~~~ 415 (960)
T 1wa5_C 389 KEKNE--------------------VLVTNIFLAHMKG-------------FVDQYM--------------------SDP 415 (960)
T ss_dssp HHHCH--------------------HHHHHHHHHHHHH-------------HHHHHH--------------------C--
T ss_pred HHHcc--------------------hhHHHHHHHHHHH-------------HHHHhc--------------------cCc
Confidence 32110 1111111111100 000000 001
Q ss_pred CCCHhHHHHHHHHHHhhhcCC-----cc-------cccHHHHHHHHHHHHHHhcC-CCChHhHHHHHHHHHHHHHhCccc
Q 000194 610 DEDFDVREYAISVAGRLSEKN-----PA-------YVLPALRRHLIQLLTYLEQS-SADNKCREESAKLLGCLIRNCERL 676 (1880)
Q Consensus 610 D~~~~VR~~a~~~l~~l~~~~-----p~-------~v~p~l~~~l~~~l~~l~~~-~~~~~~r~~a~~~L~~l~~~~~~~ 676 (1880)
+++...|++|+.++|.++... |. .+.|.+.+.+ +..+.+. +..+..|..|++++|.+++...
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v---~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-- 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI---APDLTSNNIPHIILRVDAIKYIYTFRNQLT-- 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT---HHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh---HHHhcCCCCCCceehHHHHHHHHHHHhhCC--
Confidence 345778899999999987542 11 2333333333 3334332 0268899999999999987642
Q ss_pred ccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc-----------CCchhhhHHhHHHHHHHHHhcCC---
Q 000194 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-----------GFGMRQYISELMPLIVEALLDGA--- 742 (1880)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-----------g~~~~~~~~~l~p~l~~~l~d~~--- 742 (1880)
..++.++++.++..+.++ +..|+..++.|+..++... ...+.||++.+++.++..+....
T Consensus 491 -~~~l~~~l~~l~~~L~d~-----~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~ 564 (960)
T 1wa5_C 491 -KAQLIELMPILATFLQTD-----EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP 564 (960)
T ss_dssp -HHHHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH
T ss_pred -HHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCC
Confidence 357889999999998864 6789999999999988742 35689999999999999987531
Q ss_pred -chhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHccc-CccchhhccccC
Q 000194 743 -AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN----GELVWSTRREVLKVLGIMGAL-DPHAHKRNQQLS 816 (1880)
Q Consensus 743 -~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~----~~~~~~vr~~~l~~lg~lgal-dp~~~~~~~~~~ 816 (1880)
.....+.+..+++.++...+..+.||. +.+++.|...+. ++.++..+..++.++|.+... .|-
T Consensus 565 ~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~--------- 633 (960)
T 1wa5_C 565 EKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQ--------- 633 (960)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG---------
T ss_pred CcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc---------
Confidence 112457889999999999988889985 567777776663 345677777777887776531 110
Q ss_pred CCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCC
Q 000194 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1880)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~ 896 (1880)
.-.-|...+++.+..+|.... ....+.+.+.+..++... ..+.+|
T Consensus 634 ---------------------------------~~~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~~~-~~~~~~ 678 (960)
T 1wa5_C 634 ---------------------------------NLPLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVEQS-ATIPES 678 (960)
T ss_dssp ---------------------------------GHHHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHHHC-SSCCTT
T ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHHhc-cCCCHH
Confidence 001134567778888886443 345677888888888776 567889
Q ss_pred cchhhHHHH--HHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHH
Q 000194 897 LPKVLPDLF--HTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLC 974 (1880)
Q Consensus 897 l~~iip~ll--~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~ 974 (1880)
+.+++|.++ ..++.. .....+...+..++....+.+.. ++.++..+........ + ...++.+++.++
T Consensus 679 ~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~-~-------~~~a~~ll~~i~ 747 (960)
T 1wa5_C 679 IKPLAQPLLAPNVWELK--GNIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASKA-Y-------EVHGFDLLEHIM 747 (960)
T ss_dssp TGGGHHHHTSGGGGCCT--TTHHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCTT-T-------HHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHhcCC--CCchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCCc-c-------cchHHHHHHHHH
Confidence 999999887 544432 11222222232222222211111 1445555444433221 0 126889999999
Q ss_pred HHhhhh-hhccchhhHHHHHHhccc
Q 000194 975 LALNDE-FRTHLPVILPCCIQVLSD 998 (1880)
Q Consensus 975 ~~l~~~-f~~yl~~l~p~ll~~l~~ 998 (1880)
..++.+ |.||++.+++.++..++.
T Consensus 748 ~~~~~~~~~~yl~~i~~~l~~~l~~ 772 (960)
T 1wa5_C 748 LLIDMNRLRPYIKQIAVLLLQRLQN 772 (960)
T ss_dssp HHSCHHHHGGGHHHHHHHHHHGGGS
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999988 999999999999999965
No 12
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.75 E-value=1.5e-14 Score=202.74 Aligned_cols=437 Identities=13% Similarity=0.118 Sum_probs=271.4
Q ss_pred hHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhc
Q 000194 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1880)
+.|..+..++..++...|..+.+.+...+.+.+......+.+++.++.++.+++.+++.+.....++++.+++ +++.+.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~ 514 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcC
Confidence 5788888999999988886666666666666655432222578899999999999999887777788999888 555555
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchH
Q 000194 694 EGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQ 773 (1880)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ 773 (1880)
.. +.++.|+..++.++|.++...+... .|++.++|.++..| + ..++..|..+|..+++.++..+.||. +.
T Consensus 515 ~~---d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~--~~ 584 (971)
T 2x1g_F 515 YE---KLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYA--DP 584 (971)
T ss_dssp TT---TSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHH--HH
T ss_pred cc---ccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccH--HH
Confidence 21 1378899999999999998766543 79999999999998 4 46899999999999999888888885 78
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcc
Q 000194 774 LLGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1880)
Q Consensus 774 ll~~Ll~~L~~~-~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1880)
+++.+..++... .+...+..++.++|.+...-|... .. + .-+
T Consensus 585 ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~-----------------------------~~-------~-~~~ 627 (971)
T 2x1g_F 585 LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEE-----------------------------IP-------K-YLD 627 (971)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTH-----------------------------HH-------H-HHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHH-----------------------------HH-------H-HHH
Confidence 999999999764 357889999999988743111100 00 0 000
Q ss_pred cchHHHHHHHHHHhcCCC----hhhhHHHHHHHHHHHHHHhCC-------------CCCCCcchhhHHHHHHHhcC--Cc
Q 000194 853 YYSTVAINSLMRILRDPS----LASYHQKVVGSLMFIFKSMGL-------------GCVPYLPKVLPDLFHTVRTC--DD 913 (1880)
Q Consensus 853 ~~~~~vi~~Ll~~L~d~s----~~~~~~~~~~al~~i~~~~~~-------------~~~~~l~~iip~ll~~l~~~--~~ 913 (1880)
-+...++..+..+++.+. .......++..+..+++.++. .+.++.++++|.+...+... ++
T Consensus 628 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 707 (971)
T 2x1g_F 628 IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEI 707 (971)
T ss_dssp HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccH
Confidence 012334444444444332 111222456666777776653 34567899999999888754 44
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh------hhccchh
Q 000194 914 YLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE------FRTHLPV 987 (1880)
Q Consensus 914 ~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~------f~~yl~~ 987 (1880)
.+.+.++..++.++...+..+.||+|.+++.+...++... ...++.+++.++..+|.+ +...+..
T Consensus 708 ~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~---------~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~ 778 (971)
T 2x1g_F 708 DVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC---------CAPTLEISKTAIVMFFKDEGCKPLMQQLLRE 778 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C---------CHHHHHHHHHHHTTCCC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC---------chHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 6889999999999999999999999999999998877543 126888999998888764 4455555
Q ss_pred hHHHHHHhcccc---cccCchhhHHHHHHHHHHHhcchh------hh-hhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhc
Q 000194 988 ILPCCIQVLSDA---ERCNDYTYVLDILHTLEVFGGTLD------EH-MHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057 (1880)
Q Consensus 988 l~p~ll~~l~~~---~~~~~~~~~~~il~~l~~~g~~~~------~~-~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~ 1057 (1880)
++..+++.|... +...+.++....+..+..+...-. ++ +..+++..+..+... .....++++..+..+.
T Consensus 779 ~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~-~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 779 FIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLP-ESGAIRNSIQFLTHFV 857 (971)
T ss_dssp HHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSS-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 555566555432 111122333333333333222111 33 444555555555432 2223456666666643
Q ss_pred ccc----c----ccchhHhHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHHhccccccchh
Q 000194 1058 PRV----Q----VTGHISSLVHHLKLVLDG-KNDELRKDAVDALCCLAHALGEDFTIFIP 1108 (1880)
Q Consensus 1058 ~~~----~----~~~~~~~ii~~l~~~l~~-~~~~l~~~al~~L~~l~~~~g~~f~~fip 1108 (1880)
... . +..+.+.++..+...+.+ ......+.+.++|..|....|..+..++.
T Consensus 858 ~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~ 917 (971)
T 2x1g_F 858 MQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMK 917 (971)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 321 0 122334444444443332 22344455556677777666655554443
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.71 E-value=5.9e-14 Score=196.95 Aligned_cols=402 Identities=15% Similarity=0.155 Sum_probs=262.8
Q ss_pred hHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhc
Q 000194 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1880)
+.|..+.+++..++...|..+.+.+.+.+.+.+.....+ .+++.++.++.++|.+++.+.....++++.+++.+. .+.
T Consensus 422 ~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~ 499 (963)
T 2x19_B 422 IYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEP-YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RIS 499 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCS-CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCC
Confidence 347777788888777666555555544444444222133 578899999999999999887777788888777443 333
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchH
Q 000194 694 EGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQ 773 (1880)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ 773 (1880)
+ .++.++..++.++|..+...+.. .+|++.+++.++..|.+ ..++..|+.+|..+++.++..+.||. ++
T Consensus 500 ~-----~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~--~~ 568 (963)
T 2x19_B 500 I-----SNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYDLPPYA--AN 568 (963)
T ss_dssp C-----CSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTH--HH
T ss_pred C-----CcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHhhH--HH
Confidence 3 26779999999999988765433 37899999999999965 57899999999999998888888985 78
Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcc
Q 000194 774 LLGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1880)
Q Consensus 774 ll~~Ll~~L~~~-~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1880)
+++.+..++... .+...+..++.++|.+...-| ... ...
T Consensus 569 il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~---------------------------------------~~~ 608 (963)
T 2x19_B 569 IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEE---------------------------------------ILK 608 (963)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHH---------------------------------------HHH
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHH---------------------------------------HHH
Confidence 999999988753 367889889999988642111 000 001
Q ss_pred cchHHHHHHHHHH----hcCC-Chh--hhHHHHHHHHHHHHHHhCCC----------------------CCCCcchhhHH
Q 000194 853 YYSTVAINSLMRI----LRDP-SLA--SYHQKVVGSLMFIFKSMGLG----------------------CVPYLPKVLPD 903 (1880)
Q Consensus 853 ~~~~~vi~~Ll~~----L~d~-s~~--~~~~~~~~al~~i~~~~~~~----------------------~~~~l~~iip~ 903 (1880)
|...+++.+... .+.+ +.. ......++++..+++.++.. +.++.+.++|.
T Consensus 609 -~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (963)
T 2x19_B 609 -NLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQL 687 (963)
T ss_dssp -HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHH
Confidence 122333333332 2222 111 11224677788888887642 23467888888
Q ss_pred HHHHHhcC--CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHH--Hhhh
Q 000194 904 LFHTVRTC--DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCL--ALND 979 (1880)
Q Consensus 904 ll~~l~~~--~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~--~l~~ 979 (1880)
++..+... ++...+.++..++.++..++.++.||+|++++.+........ ...++.++..+.. ..++
T Consensus 688 ~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---------~~~~l~l~~~li~~f~~~~ 758 (963)
T 2x19_B 688 IQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP---------QASALDLTRQLVHIFAHEP 758 (963)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC---------CHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC---------ccHHHHHHHHHHHHhCCCc
Confidence 88877643 345788888999999988899999999999988876655422 1257888888887 3444
Q ss_pred hhhccchhhHHHHH----HhcccccccCchhhHHHHHHHHHHHhc----c-h-hhh-hhhhHHHHHHhhcCCCcHHHHHH
Q 000194 980 EFRTHLPVILPCCI----QVLSDAERCNDYTYVLDILHTLEVFGG----T-L-DEH-MHLLLPALIRLFKVDAPVDIRRA 1048 (1880)
Q Consensus 980 ~f~~yl~~l~p~ll----~~l~~~~~~~~~~~~~~il~~l~~~g~----~-~-~~~-~~~ilp~l~~~l~~~~~~~vr~~ 1048 (1880)
.+.++++.++..++ ..+.+ +....+.+....+..+..+.. . + .+. +..+++.++..+.. ....+.+.
T Consensus 759 ~~~~~~~~~l~~~~~~~l~~~~~-~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~ 836 (963)
T 2x19_B 759 AHFPPIEALFLLVTSVTLTLFQQ-GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF-PEAPTVKA 836 (963)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHH-CTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC-SCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhh-CcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC-CCHHHHHH
Confidence 45666655544444 34432 111123333333333322211 1 1 233 56667777777753 46677888
Q ss_pred HHHHHHhhccccc--------ccchhHhHHHHHHHhhCCC
Q 000194 1049 AIETLTRLIPRVQ--------VTGHISSLVHHLKLVLDGK 1080 (1880)
Q Consensus 1049 ai~~l~~l~~~~~--------~~~~~~~ii~~l~~~l~~~ 1080 (1880)
++..+..+..... +.++...++..+...+.+.
T Consensus 837 ~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 876 (963)
T 2x19_B 837 SCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQ 876 (963)
T ss_dssp HHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998875421 3456677777777777643
No 14
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.70 E-value=2.8e-12 Score=178.66 Aligned_cols=735 Identities=10% Similarity=0.096 Sum_probs=412.4
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc-CCChHHHHHHHHHHHHHhhhC-C----
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV-KRDREILVLASKVLGHLARAG-G---- 143 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~-~~d~~v~~~aa~~l~~L~~~~-g---- 143 (1880)
|.+.+.. ..+++.+.| |-..++.+-.. ..|..+|..++.. +.+.+++..|+-.|.+.+... .
T Consensus 7 l~~~L~~-~~spd~~~r--Ae~~L~~~~~~---------p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~ 74 (960)
T 1wa5_C 7 VAKFLAE-SVIASTAKT--SERNLRQLETQ---------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG 74 (960)
T ss_dssp HHHHHHH-TTSGGGHHH--HHHHHHHHHTS---------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred HHHHHHH-hcCCCHHHH--HHHHHHHhhcC---------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4444444 335666666 55555555211 1366677777632 346899999999999887641 1
Q ss_pred --CCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 000194 144 --AMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1880)
Q Consensus 144 --~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~ 220 (1880)
...++-....=..+++.+..+. ...|..+..++..++.. .| ..-+++++.++..+.++++..+.++..++..
T Consensus 75 ~~~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~ 149 (960)
T 1wa5_C 75 NHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHS 149 (960)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2334444444445666665433 56778888888998876 44 2457888999999988888899999999888
Q ss_pred HHHHHhh--hchhhH-------HHHHH---HHHHHHHhhccCCCC--h------hHHHHHHHHHHHHHH-cchhhhHHHH
Q 000194 221 CLRVIEK--RETRWR-------VQWYY---RMFEATQDGLGRNAP--V------HSIHGSLLAVGELLR-NTGEFMMSRY 279 (1880)
Q Consensus 221 ~~~~i~~--r~~~~~-------~~~~~---~~l~~~~~~l~~~~~--~------~~~~~al~~l~~ll~-~~~~~~~~~~ 279 (1880)
+++.... +....+ ...+. .++..+...+.++.. . +..+.++.++..+.. ..++++..++
T Consensus 150 i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~ 229 (960)
T 1wa5_C 150 IFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI 229 (960)
T ss_dssp HHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 7664321 100111 11222 222233334554321 1 112223334433322 2234555566
Q ss_pred HHHHHHHHHHhhc-----------ch----hHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC----CCC---
Q 000194 280 REVAEIVLRYLEH-----------RD----RLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI----PAE--- 337 (1880)
Q Consensus 280 ~~i~~~ll~~~~~-----------~~----~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~----~~~--- 337 (1880)
...++.++..+.. ++ ..+|+.++.++-.++..-++.|. .|++.++..+...+.+ ...
T Consensus 230 ~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (960)
T 1wa5_C 230 QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFG-PMINEFIQITWNLLTSISNQPKYDIL 308 (960)
T ss_dssp HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHCCSCTTSHHH
T ss_pred HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCcCcHHH
Confidence 6666655554422 11 25788999999998877777774 5888888888887752 122
Q ss_pred cchHHHHHHHHHhhch--hhhh--hhhhHHH-HHHHHhhcC-------CCCC----------------CCchHHHHHHHH
Q 000194 338 RDSGFIALGEMAGALD--GELF--HYLPTIT-SHLREAIAP-------RRGK----------------PSLEALACVGNI 389 (1880)
Q Consensus 338 r~~a~~alg~la~~v~--~~~~--p~l~~i~-~~l~~~l~~-------~~~~----------------~~~~a~~~l~~l 389 (1880)
+..|+.-+..++..-. ..+. ++++.++ ..+...+.- +..+ ++..+..++..+
T Consensus 309 ~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l 388 (960)
T 1wa5_C 309 VSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKEL 388 (960)
T ss_dssp HHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHH
Confidence 3456666655543221 1233 7788777 455555421 0111 112344555555
Q ss_pred HHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCC
Q 000194 390 ARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNI 469 (1880)
Q Consensus 390 a~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 469 (1880)
+..+|+.+.|.+-..+..+++. . ...+
T Consensus 389 ~~~~~~~v~~~~l~~i~~~l~~----------------------------------~-~~~~------------------ 415 (960)
T 1wa5_C 389 KEKNEVLVTNIFLAHMKGFVDQ----------------------------------Y-MSDP------------------ 415 (960)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHH----------------------------------H-HC--------------------
T ss_pred HHHcchhHHHHHHHHHHHHHHH----------------------------------h-ccCc------------------
Confidence 5554432222111111111110 0 0000
Q ss_pred CccccccCCchhHHHHHHhhcccccC------CC-------cchhhHHHHHhhhccCC---ChHHHHHHHHHHHHhhhcc
Q 000194 470 PQQVSDLNGSAPVQLALQTLARFNFK------GH-------DLLEFARDSVVLYLDDE---DKATRKDAALCCCKLVANS 533 (1880)
Q Consensus 470 ~~~~~~~~~~~~~~~Al~~L~~~~~~------~~-------~l~~~v~~~~~~~l~~~---~~~VR~aAa~~~~~l~~~~ 533 (1880)
..+| ..+..|+.++|.+.-. |. .+.+|+...+.+.+.++ ++-||.+|+.+++++..-
T Consensus 416 ~~~w------~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~- 488 (960)
T 1wa5_C 416 SKNW------KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ- 488 (960)
T ss_dssp --CH------HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-
T ss_pred chhH------HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhh-
Confidence 0001 1122344444433100 10 34456556666766666 788888777666553310
Q ss_pred CCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCH
Q 000194 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDF 613 (1880)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~ 613 (1880)
. ..+.+ ..+++.++.++.|++.
T Consensus 489 ~-------------------~~~~l---------------------------------------~~~l~~l~~~L~d~~~ 510 (960)
T 1wa5_C 489 L-------------------TKAQL---------------------------------------IELMPILATFLQTDEY 510 (960)
T ss_dssp S-------------------CHHHH---------------------------------------HHHHHHHHHHTTCSCH
T ss_pred C-------------------CHHHH---------------------------------------HHHHHHHHHHhCCCCh
Confidence 0 00111 1345666667778888
Q ss_pred hHHHHHHHHHHhhhcC-----------CcccccHHHHHHHHHHHHHHhcCCC-C---hHhHHHHHHHHHHHHHhCccccc
Q 000194 614 DVREYAISVAGRLSEK-----------NPAYVLPALRRHLIQLLTYLEQSSA-D---NKCREESAKLLGCLIRNCERLIR 678 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~-----------~p~~v~p~l~~~l~~~l~~l~~~~~-~---~~~r~~a~~~L~~l~~~~~~~~~ 678 (1880)
.||..|..++.++++. .+..+.|++..++..++..+... + . ....+.+..+++.++...++.+.
T Consensus 511 ~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~-~~~~~~~~~~e~l~~al~~vv~~~~~~~~ 589 (960)
T 1wa5_C 511 VVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH-GSSPEKLAENEFLMRSIFRVLQTSEDSIQ 589 (960)
T ss_dssp HHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT-CCCHHHHTSCHHHHHHHHHHHHHHTTTTG
T ss_pred hHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 8999999999998763 23457788888777666655542 1 0 11346788999999999999999
Q ss_pred CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC-CchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
||++.+++.+...+........++.+...++.+++.++...+ +.+.++.+.++|.+...|+.. ..+....++..++.+
T Consensus 590 p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 590 PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFV 668 (960)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHH
Confidence 999999999988876521112366777788999999998744 578889999999999999743 345677788888888
Q ss_pred HhhcCcccccCCcchHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCC
Q 000194 758 VQSTGYVITPYNEYPQLLGLLL--KMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1880)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll--~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1880)
.... ..+.||. +.+++.+. ..++... .-..++++++... .+..
T Consensus 669 ~~~~-~~~~~~~--~~~~~~l~~~~~~~~~~---~~~~~~~~L~~~~------~~~~----------------------- 713 (960)
T 1wa5_C 669 VEQS-ATIPESI--KPLAQPLLAPNVWELKG---NIPAVTRLLKSFI------KTDS----------------------- 713 (960)
T ss_dssp HHHC-SSCCTTT--GGGHHHHTSGGGGCCTT---THHHHHHHHHHHH------HHHG-----------------------
T ss_pred HHhc-cCCCHHH--HHHHHHHcCHHHhcCCC---CchhHHHHHHHHH------HhCh-----------------------
Confidence 8776 4455653 56777776 5554321 1122333332211 0000
Q ss_pred CcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCC-CCCCcchhhHHHHHHHhcCC-c
Q 000194 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRTCD-D 913 (1880)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~-~~~~l~~iip~ll~~l~~~~-~ 913 (1880)
+ .+. . ...++..+.+.+.+... ...++..+..|+..++.. +.||++.+++.++..+.... +
T Consensus 714 -~----~~~----~-----~~~~l~~~~~~~~~~~~---~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~ 776 (960)
T 1wa5_C 714 -S----IFP----D-----LVPVLGIFQRLIASKAY---EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776 (960)
T ss_dssp -G----GCS----C-----SHHHHHHHHHHHTCTTT---HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCH
T ss_pred -H----HHH----H-----HHHHHHHHHHHhCCCcc---cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcH
Confidence 0 000 0 13344445555555542 246888999999999888 89999999999999887652 3
Q ss_pred chhHHHHHHHHHHHHHHHHh-HHHhHH-----HHHHHHHHhhc----CCCCCcccccccchhHHHHHHHHHH--Hhhhhh
Q 000194 914 YLKDYITWKLGTLVSIVRQH-IRKYLQ-----ELFSLISELWS----SFSLPATNRTYRGLPVLHLVQQLCL--ALNDEF 981 (1880)
Q Consensus 914 ~~~~~~~~~l~~lv~~~~~~-i~~y~~-----~i~~~i~~~~~----~~~~~~~~~~~~~~~~l~~i~~l~~--~l~~~f 981 (1880)
..+..++..++.++-..++. +.+.++ ..+.++...|- ....+ ..+...+++++.-+.. ..+..+
T Consensus 777 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~----~erk~~~~gl~~ll~~~~~~~~~~ 852 (960)
T 1wa5_C 777 RYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNL----LDRKIALIGVLNMVINGQFFQSKY 852 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSH----HHHHHHHHHHHHHHHSCHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCH----HHHHHHHHHHHHHHhcccccchhH
Confidence 34433333444444322322 223332 11233333332 11100 1123233433332222 124456
Q ss_pred hccchhhHHHHHHhccc
Q 000194 982 RTHLPVILPCCIQVLSD 998 (1880)
Q Consensus 982 ~~yl~~l~p~ll~~l~~ 998 (1880)
.+.++.++..++.++..
T Consensus 853 ~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 853 PTLISSTMNSIIETASS 869 (960)
T ss_dssp GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 66777777777777754
No 15
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.68 E-value=1.7e-12 Score=181.83 Aligned_cols=793 Identities=9% Similarity=0.019 Sum_probs=411.2
Q ss_pred HHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhhccc
Q 000194 23 LDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
...+.++++.+.+++.+.++ |-..|..+ .-+++ .+..+ ..++ .+.+...|..|...+...+...
T Consensus 6 ~~~l~~~l~~~~~~d~~~r~~A~~~L~~~------~~~p~----~w~~~----~~lL~~~~~~~vr~~aa~~L~~~i~~~ 71 (971)
T 2x1g_F 6 IARLEEAVVSFYRSNSQNQAITHEWLTDA------EASPQ----AWQFS----WQLMQLGKSQEVQFFGAITLHSKLMKH 71 (971)
T ss_dssp -----CTHHHHHTSTTTC----CHHHHHT------TTSTH----HHHHH----HHHTCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHH------HcCHH----HHHHH----HHHHhcCCcHHHHHHHHHHHHHHHHcc
Confidence 34466777777676544443 43222221 12232 22212 2333 3567788999999998887653
Q ss_pred cCc-chhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhh-hcCCCcchhHHHHHHH
Q 000194 101 LGE-NASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDW-LRGDRVEYRRFAAVLI 176 (1880)
Q Consensus 101 ~~~-~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~-l~~~~~~~~R~aA~~~ 176 (1880)
-.. +......+-+++...+-. .+...++...+.++..++......|+++++..+..+-.- +..-.++..+..++.+
T Consensus 72 w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i 151 (971)
T 2x1g_F 72 WHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLEV 151 (971)
T ss_dssp GGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHHHH
Confidence 221 111112222333333321 225789999999999999873227888877666543210 0000144678899999
Q ss_pred HHHHHhhc------------CccchhchHHHHHHHHHHhcCCc-h-------hHHHHHHHHHHHHHHH--HhhhchhhHH
Q 000194 177 LKEMAENA------------STVFNVHVAEFVDAIWVALRDPT-L-------AVRERAVEALRACLRV--IEKRETRWRV 234 (1880)
Q Consensus 177 l~~la~~~------------p~~l~~~l~~i~~~i~~~l~D~~-~-------~VR~aA~~al~~~~~~--i~~r~~~~~~ 234 (1880)
|+.+++.. ...+..+++.+++.+...+.+.. + .++.+|.++++.++.. +... ...
T Consensus 152 L~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~ 228 (971)
T 2x1g_F 152 LTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCV 228 (971)
T ss_dssp HHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHH
T ss_pred HHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccc
Confidence 99888631 12355677778777766665332 1 6888899888877652 3211 223
Q ss_pred HHHHHHHHHHHh-hc------cC----CCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHH-------hhcch-
Q 000194 235 QWYYRMFEATQD-GL------GR----NAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRY-------LEHRD- 294 (1880)
Q Consensus 235 ~~~~~~l~~~~~-~l------~~----~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~-------~~~~~- 294 (1880)
.+++.++. +.. -+ ++ .++.+.+.+|+.++.+++.... +...+.+..+++.++.. ...++
T Consensus 229 ~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 307 (971)
T 2x1g_F 229 TITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKREN 307 (971)
T ss_dssp HHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred cHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence 44444444 310 01 00 0124678899999999998422 11223334444433321 12334
Q ss_pred --hHHHHHHHHHhHhHhhhChhhHH----------HHHHHHHHHHHHHhhcC----C-C--CcchHHHHHHHHHhhc---
Q 000194 295 --RLVRLSITSLLPRIAHFLRDRFV----------TNYLKICMNHILTVLRI----P-A--ERDSGFIALGEMAGAL--- 352 (1880)
Q Consensus 295 --~~Vr~~~~~~i~~la~~~~~~f~----------~~yl~~~~~~Ll~~L~~----~-~--~r~~a~~alg~la~~v--- 352 (1880)
..+...++.++..++......|. ..++..+++.++..... . . .+..++.....++...
T Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 26677777777777754444333 14667888888877643 2 2 2456666666666532
Q ss_pred ---------hhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000194 353 ---------DGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQ 423 (1880)
Q Consensus 353 ---------~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~ 423 (1880)
...+.|+++.+++.+...+.-+... . ... ..+.-.+-.... .....+++..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~---~-----------~~~-~d~~e~~~f~~~-----R~~~~~~l~~ 447 (971)
T 2x1g_F 388 SNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEK---S-----------LAK-WSSDDLECFRCY-----RQDISDTFMY 447 (971)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHTSCCCTT---T-----------TSC-SCHHHHHHHHHH-----HHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcc---c-----------ccc-cCHhHHHHHHHH-----HHHHHHHHHH
Confidence 1124567777777766665211110 0 000 000000000000 0001111111
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhH
Q 000194 424 ITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFA 503 (1880)
Q Consensus 424 i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v 503 (1880)
++...+ ..+.+. +.+++
T Consensus 448 ~~~~~~---~~~l~~------------------------------------------------------------~~~~l 464 (971)
T 2x1g_F 448 CYDVLN---DYILEI------------------------------------------------------------LAAML 464 (971)
T ss_dssp HHTTCT---THHHHH------------------------------------------------------------HHHHH
T ss_pred HHHHHh---HHHHHH------------------------------------------------------------HHHHH
Confidence 111111 000000 01122
Q ss_pred HHHHhhhcc-CCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhc--CCChhHHHH
Q 000194 504 RDSVVLYLD-DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA--DADVTVRHS 580 (1880)
Q Consensus 504 ~~~~~~~l~-~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~--d~~~~vR~~ 580 (1880)
...+..+-. ..++..|.+|..+++.+...... .....+..+++ ++. .+. |+.+.||..
T Consensus 465 ~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~-----------------~~~~~l~~l~~-~l~-~l~~~d~~~~vr~~ 525 (971)
T 2x1g_F 465 DEAIADLQRHPTHWTKLEACIYSFQSVAEHFGG-----------------EEKRQIPRLMR-VLA-EIPYEKLNVKLLGT 525 (971)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------------------CHHHHHHH-HHH-HSCTTTSCHHHHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHHhhcCh-----------------hhhHHHHHHHH-HHH-hcCccccCHHHHHH
Confidence 222111111 14566777776665554321110 00123444444 222 223 678999999
Q ss_pred HHHhccCCCCcchhhc-----cHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCC
Q 000194 581 IFSSLYGNRGFDDFLA-----QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSAD 655 (1880)
Q Consensus 581 ~l~~l~~~~~fd~~L~-----~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~ 655 (1880)
++..++ +|..++. -+.+++.++.++ | +.|+..|..++.++++.++..+.|++..++..++..+.....+
T Consensus 526 a~~~l~---~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~ 599 (971)
T 2x1g_F 526 ALETMG---SYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMK 599 (971)
T ss_dssp HHHHHH---HTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHH---HHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCC
Confidence 998885 3333332 134677888888 4 7899999999999999888778898888776666656543134
Q ss_pred hHhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCC-ChhHHHHHHH---HHHHHHHhc-----------
Q 000194 656 NKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINA-NNGIISGVLV---TVGDLARVG----------- 719 (1880)
Q Consensus 656 ~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~-~~~v~~~~~~---~l~~La~~~----------- 719 (1880)
...+....++++.++...+ ....||+..+++.++..+..-..... +..-...+.. +++.+....
T Consensus 600 ~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~ 679 (971)
T 2x1g_F 600 NSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQ 679 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccc
Confidence 6778889999999998764 66778888888877776553110001 2222233333 333333322
Q ss_pred --CCchhhhHHhHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000194 720 --GFGMRQYISELMPLIVEALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1880)
Q Consensus 720 --g~~~~~~~~~l~p~l~~~l~d~-~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~ 796 (1880)
.+.+.++.++++|.+...+.+. .+..+.+.++..++.++...|..+.|| .|.+++.++..+++... ..++.
T Consensus 680 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~--l~~~~~~l~~~~~~~~~----~~~l~ 753 (971)
T 2x1g_F 680 PIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPM--LQDLCLFIVASFQTRCC----APTLE 753 (971)
T ss_dssp ----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTH--HHHHHHHHHHHCC--CC----HHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhcccc--HHHHHHHHHHHHhcCCc----hHHHH
Confidence 2357889999999999988753 355788999999999999888888898 58999999988865433 12455
Q ss_pred HHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCC--Chhhh
Q 000194 797 VLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP--SLASY 874 (1880)
Q Consensus 797 ~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~--s~~~~ 874 (1880)
++|.+.. -+. . + ..+. +...+.+ ..++...+.+|... .....
T Consensus 754 l~~~~i~--~~~--------~----------~-----~~~~----------~~l~~~~-~~~~~~~~~~l~~~~~~~~~~ 797 (971)
T 2x1g_F 754 ISKTAIV--MFF--------K----------D-----EGCK----------PLMQQLL-REFIQHSFKLFESTPEQNFSN 797 (971)
T ss_dssp HHHHHHT--TCC--------C------------------------------HHHHHHH-HHHHHHHHHHHTSCTTTHHHH
T ss_pred HHHHHHH--HhC--------C----------C-----cchH----------HHHHHHH-HHHHHHHHHHHhcccccCCcc
Confidence 5544321 010 0 0 0000 0011112 22334445555543 11112
Q ss_pred HHHHHHHHH----HHHHHhCCCC--CCC-cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH------HHhHHHhHHHH
Q 000194 875 HQKVVGSLM----FIFKSMGLGC--VPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV------RQHIRKYLQEL 941 (1880)
Q Consensus 875 ~~~~~~al~----~i~~~~~~~~--~~~-l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~------~~~i~~y~~~i 941 (1880)
++.+.++.. .+++.....+ .|. ++.+++..+..+...++.....++..+..++..- ++.+.++.+.+
T Consensus 798 ~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l 877 (971)
T 2x1g_F 798 ISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQT 877 (971)
T ss_dssp THHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHH
Confidence 344545544 4444332222 266 7888888888887655544445555666655542 22333444555
Q ss_pred HHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhh
Q 000194 942 FSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVI 988 (1880)
Q Consensus 942 ~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l 988 (1880)
+..+....... .|.+ .. ..+..++..+....++++++|+...
T Consensus 878 ~~~l~~~~~~~-~~~s---~~-~~~a~~l~~l~~~~~~~~~~~l~~~ 919 (971)
T 2x1g_F 878 LYTAMMCVGYL-TPRS---QV-DKFADILLAMNRKYAAEMAVWMKSL 919 (971)
T ss_dssp HHHHHHHHHTT-SCGG---GG-GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccc-CChh---HH-HHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 54444332211 1211 12 1455667777777777777776543
No 16
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.65 E-value=7.8e-12 Score=175.34 Aligned_cols=747 Identities=11% Similarity=0.021 Sum_probs=419.4
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCCchh
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMTAD 148 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~-g~~~~~ 148 (1880)
+.+.+..+..+++...|..|-..+..+-.-+ .+..++..++..+.+.+++-.|+.+|.+.+... .....+
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 4555555566678888887777777764332 133455556655668899999999999888753 334444
Q ss_pred HHHHHHHHHHhhhcCC--CcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHHhcC-----CchhHHHHHHHHHHH
Q 000194 149 EVEFQVKMALDWLRGD--RVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRD-----PTLAVRERAVEALRA 220 (1880)
Q Consensus 149 ~v~~~~~~~~~~l~~~--~~~~~R~aA~~~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D-----~~~~VR~aA~~al~~ 220 (1880)
-.+..=..+++++.+. .+...|.....++..++.. .|.. -+++++.+...++. +++..++.+...|..
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDA----WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc----cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Confidence 4444455566666431 2456777778888888876 3432 24666777777765 466678888888887
Q ss_pred HHHHHhhhch---------hhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh
Q 000194 221 CLRVIEKRET---------RWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL 290 (1880)
Q Consensus 221 ~~~~i~~r~~---------~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~ 290 (1880)
+.+.+..+.. ..-..+.+.+++.+...+.+... ......++.++...+....... ....+++.++..+
T Consensus 173 l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~--~~~~ll~~l~~~l 250 (963)
T 2x19_B 173 LPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ--DCEALIQAAFAAL 250 (963)
T ss_dssp HHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG--GTHHHHHHHHHHT
T ss_pred CHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc--cchHHHHHHHHHh
Confidence 7754422210 00012355566555555544322 1356666666654444111111 1134555566555
Q ss_pred hcchhHHHHHHHHHhHhHhhhC-hhhHHHHHHHHHHHHHHHh-------hcCCCC--cchHHHHHHHHHhhchhhhh---
Q 000194 291 EHRDRLVRLSITSLLPRIAHFL-RDRFVTNYLKICMNHILTV-------LRIPAE--RDSGFIALGEMAGALDGELF--- 357 (1880)
Q Consensus 291 ~~~~~~Vr~~~~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~-------L~~~~~--r~~a~~alg~la~~v~~~~~--- 357 (1880)
.++.+|.+++.++..+.... +..+. .++..+++.++.. +...+. ....+..+..++......+.
T Consensus 251 --~~~~~~~~a~~~l~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~ 327 (963)
T 2x19_B 251 --QDSELFDSSVEAIVNAISQPDAQRYV-NTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327 (963)
T ss_dssp --TSTTTHHHHHHHHHHHHTCTTGGGCH-HHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred --CCchHHHHHHHHHHHHHcccccccCH-HHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence 35778999999999887532 22222 2333444433322 222111 12233333344333222222
Q ss_pred ---hhhhHHHHHHHHhhcC-----CCCCCCchHHHHHHHHHHHhCC-----------CchHHHHHHHHHHHhcC-C-CHH
Q 000194 358 ---HYLPTITSHLREAIAP-----RRGKPSLEALACVGNIARAMGP-----------VMEPHVRGLLDIMFSAG-L-STT 416 (1880)
Q Consensus 358 ---p~l~~i~~~l~~~l~~-----~~~~~~~~a~~~l~~la~~~g~-----------~~~~~l~~ll~~l~~~~-l-s~~ 416 (1880)
+++..+++.+...... ...+....++.+|..+++.... .+.|++..+++.++..- . ++.
T Consensus 328 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~ 407 (963)
T 2x19_B 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDE 407 (963)
T ss_dssp GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 4455566666655543 1223345788899988884321 12334444433333210 0 000
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc-hhHHHHHHhhccc-cc
Q 000194 417 LVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS-APVQLALQTLARF-NF 494 (1880)
Q Consensus 417 l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Al~~L~~~-~~ 494 (1880)
..+ +.. .++.++- +....+.++|..+ ..
T Consensus 408 ~~~------------------------------------------------~~~--~de~~~~~~~r~~~~~~L~~~~~~ 437 (963)
T 2x19_B 408 EYG------------------------------------------------FWS--SDEKEQFRIYRVDISDTLMYVYEM 437 (963)
T ss_dssp HHH------------------------------------------------TSC--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc------------------------------------------------CCC--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 0000000 0011122222221 00
Q ss_pred CCCcchhhHHHHHhhhc----cCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHh
Q 000194 495 KGHDLLEFARDSVVLYL----DDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV 570 (1880)
Q Consensus 495 ~~~~l~~~v~~~~~~~l----~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~ 570 (1880)
.|....+.+.+.+...+ ++.++..|.+|..+++.+...... ...+.+..+++.+. .+
T Consensus 438 ~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~-----------------~~~~~l~~l~~~l~--~l 498 (963)
T 2x19_B 438 LGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV-----------------NYSDVVPGLIGLIP--RI 498 (963)
T ss_dssp HTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS-----------------SCCSHHHHHHHHGG--GS
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc-----------------hhhHHHHHHHHHHH--hC
Confidence 12112222333333333 556788888887777665532110 01123445555332 34
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhc-c----HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHH
Q 000194 571 ADADVTVRHSIFSSLYGNRGFDDFLA-Q----ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQL 645 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~fd~~L~-~----~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~ 645 (1880)
.++.+.||..++..++ +|..++. . +.+++.++..++| +.|+..|..++.++++.++..+.|++..++..+
T Consensus 499 ~~~~~~vr~~~~~~l~---~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l 573 (963)
T 2x19_B 499 SISNVQLADTVMFTIG---ALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVS 573 (963)
T ss_dssp CCCSHHHHHHHHHHHH---HTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH---HHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5678899999998885 3433332 1 3467888888877 789999999999999988888889998876655
Q ss_pred HHHHhcCCCChHhHHHHHHHHHHHHHhCc-ccccCchHHHHHHHHHHhccCCCCCCChhHH---HHHHHHHHHHHHhcCC
Q 000194 646 LTYLEQSSADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGII---SGVLVTVGDLARVGGF 721 (1880)
Q Consensus 646 l~~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~---~~~~~~l~~La~~~g~ 721 (1880)
...+.....+.+.+....++++.++...+ +...||+..+++.+...+..-.....++..+ ...+.+++.+++..+.
T Consensus 574 ~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~ 653 (963)
T 2x19_B 574 QDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDI 653 (963)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55555421346778889999999998876 7788999999999888875311001133333 3556777777765442
Q ss_pred ----------------------chhhhHHhHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHH
Q 000194 722 ----------------------GMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778 (1880)
Q Consensus 722 ----------------------~~~~~~~~l~p~l~~~l~d-~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~L 778 (1880)
.+.++...++|.+...+.. ..+....+.++..++.++...|..+.|| .|.+++.+
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~--l~~~~~~l 731 (963)
T 2x19_B 654 SHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPM--VPQLCEML 731 (963)
T ss_dssp SCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGG--HHHHHHHH
T ss_pred CcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccccc--HHHHHHHH
Confidence 2566888999998888753 3345788999999999999888877887 47888888
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHH
Q 000194 779 LKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVA 858 (1880)
Q Consensus 779 l~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 858 (1880)
+........+ ..+.+++.+.. -+.. . + .+... ..+ +...+
T Consensus 732 ~~~~~~~~~~----~~l~l~~~li~--~f~~------~-----------~------~~~~~----------~~~-~l~~~ 771 (963)
T 2x19_B 732 GRMYSTIPQA----SALDLTRQLVH--IFAH------E-----------P------AHFPP----------IEA-LFLLV 771 (963)
T ss_dssp HHHHHHSCCH----HHHHHHHHHHH--HHTT------C-----------T------TTCHH----------HHH-HHHHH
T ss_pred HHHHHcCCcc----HHHHHHHHHHH--HhCC------C-----------c------chHHH----------HHH-HHHHH
Confidence 7766543222 24455554421 0000 0 0 00000 000 11344
Q ss_pred HHHHHHHhc-CC-ChhhhHHHHHHHHHHHHHHhCCCC--CCC-cchhhHHHHHHHhcCCcchhHHHHHHHHHHHHH----
Q 000194 859 INSLMRILR-DP-SLASYHQKVVGSLMFIFKSMGLGC--VPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI---- 929 (1880)
Q Consensus 859 i~~Ll~~L~-d~-s~~~~~~~~~~al~~i~~~~~~~~--~~~-l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~---- 929 (1880)
+..++.++. +. +..++....+..+..+++.....+ .|. +..+++.++..++..+.......+..+..++..
T Consensus 772 ~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~ 851 (963)
T 2x19_B 772 TSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEV 851 (963)
T ss_dssp HHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSS
T ss_pred HHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCCh
Confidence 455555554 32 223455567777778877765443 255 888999999988876655666666667666643
Q ss_pred --HHHhHHHhHHHHHHHHHHhhc
Q 000194 930 --VRQHIRKYLQELFSLISELWS 950 (1880)
Q Consensus 930 --~~~~i~~y~~~i~~~i~~~~~ 950 (1880)
+.+.+.+|.+.++..+.....
T Consensus 852 ~~~~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 852 ESVGKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp CHHHHHTTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 233445667777766665554
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.61 E-value=6e-14 Score=179.62 Aligned_cols=380 Identities=13% Similarity=0.095 Sum_probs=264.2
Q ss_pred HHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccC-
Q 000194 26 LNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVALG- 102 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~- 102 (1880)
+.+++.++.+++.+.++ |...|..+- .+....|+..+...+ .++ .+...|..|...+..++...-.
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~--------~~~~~~~~~~L~~il---~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAA--------VENLPTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH--------hhChHHHHHHHHHHH---HcCCCChHHHHHHHHHHHHhccccchH
Confidence 56788888888655554 554454432 112333444344322 233 3677888888888888754200
Q ss_pred ----------c-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC--CCCchhHHHHHHHHHHhhhcCCC-cch
Q 000194 103 ----------E-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG--GAMTADEVEFQVKMALDWLRGDR-VEY 168 (1880)
Q Consensus 103 ----------~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~--g~~~~~~v~~~~~~~~~~l~~~~-~~~ 168 (1880)
. ........-+.|...+. +.+..+ ..++.+++.++... ...++++++.++.. +.++. ++.
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~----l~~~~~~~~ 145 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVAN----VTNPNSTEH 145 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHH----HHCTTCCHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHH----hccCCCCHH
Confidence 0 11111223334444453 446677 99999999999862 23677776665554 44432 668
Q ss_pred hHHHHHHHHHHHHhhc-CccchhchHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 169 RRFAAVLILKEMAENA-STVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
.|.+|+.+++.+++.. |..+.++++.+++.+...+.|+ ++.||.+|+++++.++..+....... .+...+++.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~--~~~~~l~~~l~ 223 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE--SERHFIMQVVC 223 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHH
Confidence 8999999999999976 7788999999999999999998 79999999999998765543211100 01122344444
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC------------
Q 000194 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL------------ 312 (1880)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~------------ 312 (1880)
..+.++ +.+++.+++.+|..+....++.+.+++. .+++.++....+.++.||..++..+..++...
T Consensus 224 ~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445554 4788999999999999988888888888 89988888888899999999999999887642
Q ss_pred --------hhhHHHHHHHHHHHHHHHhhcCC---------CCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCC
Q 000194 313 --------RDRFVTNYLKICMNHILTVLRIP---------AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375 (1880)
Q Consensus 313 --------~~~f~~~yl~~~~~~Ll~~L~~~---------~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~ 375 (1880)
...+++.|++.++|.++..+... ..|..|..+|+.++...|+ ..++.+++.+.+.+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~ 379 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPD 379 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSS
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCC
Confidence 12356668899999999888542 2377999999999999985 456788888888886654
Q ss_pred CCCCchHHHHHHHHHHHhCC-CchHHHHHHHHHHHhc--CCCHHHH----HHHHHHHHhC
Q 000194 376 GKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSA--GLSTTLV----DALEQITVSI 428 (1880)
Q Consensus 376 ~~~~~~a~~~l~~la~~~g~-~~~~~l~~ll~~l~~~--~ls~~l~----~~l~~i~~~~ 428 (1880)
.+.+..++.++|.+++..++ .+.++++.++|.++.. .-.+.++ .++..+++.+
T Consensus 380 ~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 44457899999999986653 4778888888888764 2344444 3555566544
No 18
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.61 E-value=6.8e-13 Score=169.76 Aligned_cols=427 Identities=13% Similarity=0.083 Sum_probs=275.8
Q ss_pred HHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc----------
Q 000194 605 FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE---------- 674 (1880)
Q Consensus 605 ~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~---------- 674 (1880)
+..+.+++.++|..|-..|..+...++ |.+-..+.+.+ .++..+...|..|+-+|..+++...
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~~~~~~~----~~~~~~L~~il---~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLERAAVENL----PTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhCh----HHHHHHHHHHH---HcCCCChHHHHHHHHHHHHhccccchHHHHHHHhh
Confidence 334456667777777777776554321 22222222222 2221356667777777777764320
Q ss_pred -cccc-CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCC-chhhHHHHH
Q 000194 675 -RLIR-PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA-AVTKREVAV 751 (1880)
Q Consensus 675 -~~~~-py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~-~~~~r~~Al 751 (1880)
..+. .....|-..+++.+.++ ++.+ ..+..+++.++...+.. ...++++|.+++.+++.. +...|+.|+
T Consensus 80 ~~~l~~~~~~~ik~~ll~~l~~~-----~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 80 WLAIDANARREVKNYVLQTLGTE-----TYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTCC-----CSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCCC-----Cchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 1111 12234555677777764 3455 67788889988765431 245789999999998753 578999999
Q ss_pred HHHHHHHhhc-CcccccCCcchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCC
Q 000194 752 STLGQVVQST-GYVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDS 829 (1880)
Q Consensus 752 ~~Lg~l~~~~-~~~i~p~~~~p~ll~~Ll~~L~~~~-~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~ 829 (1880)
.+|+.+++.. +..+.++ .+.+++.++..+++++ ++.+|.+++++++.+.. +... .
T Consensus 152 ~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~---~~~~-~----------------- 208 (462)
T 1ibr_B 152 EAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE---FTKA-N----------------- 208 (462)
T ss_dssp HHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT---TTHH-H-----------------
T ss_pred HHHHHHHHhCCchhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HHHH-h-----------------
Confidence 9999999876 4334444 3679999999998764 78999999999887631 1100 0
Q ss_pred CCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcc-hhhHHHHHHH
Q 000194 830 GQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLP-KVLPDLFHTV 908 (1880)
Q Consensus 830 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~-~iip~ll~~l 908 (1880)
. ...-+...+++.|...+.+++. .....+++++..+....+..+.+|++ .+++.++..+
T Consensus 209 ---------~----------~~~~~~~~l~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 209 ---------F----------DKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp ---------H----------TSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred ---------h----------hhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000123355666666666653 45668899999999888777789999 9999999988
Q ss_pred hcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhh
Q 000194 909 RTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVI 988 (1880)
Q Consensus 909 ~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l 988 (1880)
++.++.+|..++..++.++..... + .. ......... ++ .. .....-+++|++.+
T Consensus 269 ~~~~~~v~~~a~~~l~~~~~~~~~--------~----~~-~~~~~~~~~-~~----~~--------~~~~~~~~~~~~~l 322 (462)
T 1ibr_B 269 KSDIDEVALQGIEFWSNVCDEEMD--------L----AI-EASEAAEQG-RP----PE--------HTSKFYAKGALQYL 322 (462)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHH--------H----HH-HHCCTTCSS-SC----SS--------CCCCCHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHH--------H----HH-hcccccccC-CC----cc--------chhHHHHHHHhhhc
Confidence 887777888777776666543210 0 00 111000000 00 00 01112345688999
Q ss_pred HHHHHHhcccccc---cCchhhHHHHHHHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc---
Q 000194 989 LPCCIQVLSDAER---CNDYTYVLDILHTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ--- 1061 (1880)
Q Consensus 989 ~p~ll~~l~~~~~---~~~~~~~~~il~~l~~~g~~~-~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~--- 1061 (1880)
+|.+++.+.+.+. ..+......+..++..++..+ +..+..++|.+...+.. ..+.+|.+|+.++|.++.+.+
T Consensus 323 ~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~ 401 (462)
T 1ibr_B 323 VPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQ 401 (462)
T ss_dssp HHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTTT
T ss_pred cHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHHH
Confidence 9999998864211 111122223333443333333 34556677777777754 478999999999999998643
Q ss_pred ccchhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcccc--ccchhHHHHHHHh
Q 000194 1062 VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF--TIFIPSIHKLLLK 1116 (1880)
Q Consensus 1062 ~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f--~~fip~i~~~l~~ 1116 (1880)
+.++++.+++.+++.+.++++.+|..|..+|+.++...|..+ ..|++.+.+.+.+
T Consensus 402 ~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 567899999999999999899999999999999999998876 4788888887764
No 19
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.58 E-value=1.2e-11 Score=173.69 Aligned_cols=420 Identities=13% Similarity=0.164 Sum_probs=244.2
Q ss_pred hHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc-ccCchHHHHHHHHHHh
Q 000194 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAPIHKALVARL 692 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~il~~ll~~l 692 (1880)
+.|..+..+|..++...|..+.+.+...+.+.+ ..+..+++.++.++.++|.+++.+... -.++++.+++.++...
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l---~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTEEIMISKLARQI---DGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---TSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 457777788888887666555555444443332 222257899999999999998765433 2355677777766532
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCccc-------
Q 000194 693 LEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI------- 765 (1880)
Q Consensus 693 ~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i------- 765 (1880)
......+..+.++..++.++|..+...... ..|++.+++.+++.+.+. +..++..|..+|..+++.++..+
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l~~~~~~~ 582 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRE 582 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTC
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 211000013445556788888877654332 468899999999998875 57899999999999999877544
Q ss_pred -ccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccC
Q 000194 766 -TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLW 844 (1880)
Q Consensus 766 -~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 844 (1880)
.||. +++++.+..++..- +..-....++++|.+....|...... .....+
T Consensus 583 ~~p~~--~~il~~l~~~~~~~-~~~~~~~~~eai~~ii~~~~~~~~~~-------------------------~~~~~l- 633 (1049)
T 3m1i_C 583 SEPFI--QTIIRDIQKTTADL-QPQQVHTFYKACGIIISEERSVAERN-------------------------RLLSDL- 633 (1049)
T ss_dssp SSCHH--HHHHHTHHHHHTTS-CHHHHHHHHHHHHHHHHTCCSHHHHH-------------------------HHHHHH-
T ss_pred CCcHH--HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHcCCCHHHHH-------------------------HHHHHH-
Confidence 2664 68999888888653 34445667788887643222100000 000000
Q ss_pred CCCCCCcccchHHHHHHHHHHh----cCCCh---h---hhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcc
Q 000194 845 PSFATSEDYYSTVAINSLMRIL----RDPSL---A---SYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDY 914 (1880)
Q Consensus 845 ~~~~~~~~~~~~~vi~~Ll~~L----~d~s~---~---~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~ 914 (1880)
...++..+-.++ .+++. . ..-...++++..+++.+|..+.|+++.+++.++..++... .
T Consensus 634 ----------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~-~ 702 (1049)
T 3m1i_C 634 ----------MQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS-S 702 (1049)
T ss_dssp ----------THHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH-H
T ss_pred ----------HHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 011222222222 11111 0 1112346677788889999888888888887765544321 0
Q ss_pred hhHHHHHHHHHHH--HHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHH
Q 000194 915 LKDYITWKLGTLV--SIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCC 992 (1880)
Q Consensus 915 ~~~~~~~~l~~lv--~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~l 992 (1880)
..+.....-|... .-....++...|.+..++..+.... .+++..+.||++.++..+
T Consensus 703 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~----------------------~~l~~~~~~~~~~~l~~l 760 (1049)
T 3m1i_C 703 MISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA----------------------RNLDDVVKVLVEPLLNAV 760 (1049)
T ss_dssp HHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC----------------------SCHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC----------------------CCHHHHHHHHHHHHHHHH
Confidence 0000000000000 0000111222233333232221111 122334678888888888
Q ss_pred HHhcccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHh----hcC--CCcHHHHHHHHHHHHhhccc-c----
Q 000194 993 IQVLSDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRL----FKV--DAPVDIRRAAIETLTRLIPR-V---- 1060 (1880)
Q Consensus 993 l~~l~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~----l~~--~~~~~vr~~ai~~l~~l~~~-~---- 1060 (1880)
+..+.+.....+....+.+++.+. .+|..+.+++..+++.+... +.. +..+++|+..+..+++++.. .
T Consensus 761 l~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~ 840 (1049)
T 3m1i_C 761 LEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFL 840 (1049)
T ss_dssp HHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 887653211111123455555553 47777778877776665543 432 25688999999999998764 1
Q ss_pred cccc-hhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhc
Q 000194 1061 QVTG-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALG 1100 (1880)
Q Consensus 1061 ~~~~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g 1100 (1880)
.+.+ ....+++..+..+..+++.+.++++.++..++...+
T Consensus 841 ~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 841 ELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 1223 356778888888988889999999999999998765
No 20
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.50 E-value=6.4e-10 Score=156.26 Aligned_cols=757 Identities=11% Similarity=0.067 Sum_probs=385.8
Q ss_pred CCCCHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhh
Q 000194 19 GGGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97 (1880)
Q Consensus 19 ~~~~~~~~~~l~~~l~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li 97 (1880)
..+....+.++++.+-+++.+.++ |-..|..+ + -+++.... +... +.++.+...|..|...+...+
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~-----~-~~p~~~~~----l~~i---L~~s~~~~vr~~aa~~Lk~~i 77 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKF-----Q-DNPDAWQK----ADQI---LQFSTNPQSKFIALSILDKLI 77 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----H-HSTTGGGG----HHHH---HHHCSCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhCCChHHHHHHHHHHHHH-----H-hCchHHHH----HHHH---HhhCCCHHHHHHHHHHHHHHH
Confidence 346677888888888887654444 43333322 1 22332221 2211 123567788888888888887
Q ss_pred ccccC----cchhHHHH-HHHHHHhhcccCC-----ChHHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHhhhcCCCc
Q 000194 98 DVALG----ENASKVSK-FSNYMRTVFEVKR-----DREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRV 166 (1880)
Q Consensus 98 ~~~~~----~~~~~~~~-~~~~L~~~l~~~~-----d~~v~~~aa~~l~~L~~~-~g~~~~~~v~~~~~~~~~~l~~~~~ 166 (1880)
...-. +....++. ..+++...-+ .. +..++...+.++..++.. ....|+++++..+..+ + .+
T Consensus 78 ~~~W~~l~~~~~~~ir~~ll~~l~~~~~-~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~--~~ 150 (1049)
T 3m1i_C 78 TRKWKLLPNDHRIGIRNFVVGMIISMCQ-DDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S--SS 150 (1049)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHHHHHHHH-CHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T--TC
T ss_pred HhhCccCCHHHHHHHHHHHHHHHHhhCC-ccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c--cC
Confidence 54311 11222222 2333333211 11 367889999999999987 3457888877776654 2 33
Q ss_pred chhHHHHHHHHHHHHhhcC----------------ccchhchHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHhhhc
Q 000194 167 EYRRFAAVLILKEMAENAS----------------TVFNVHVAEFVDAIWVALRDP-TLAVRERAVEALRACLRVIEKRE 229 (1880)
Q Consensus 167 ~~~R~aA~~~l~~la~~~p----------------~~l~~~l~~i~~~i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~ 229 (1880)
...+..++.+|+.+++... ..+..+++.+++.+...+.++ ++.+|.+|.+++..++.++....
T Consensus 151 ~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~ 230 (1049)
T 3m1i_C 151 VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY 230 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH
Confidence 4567788888888886432 335677888888888888654 57899999999988766543111
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc-hhh---hHHHHHHHHHHHHHHhhc--chhHHHHHHHH
Q 000194 230 TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT-GEF---MMSRYREVAEIVLRYLEH--RDRLVRLSITS 303 (1880)
Q Consensus 230 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~-~~~---~~~~~~~i~~~ll~~~~~--~~~~Vr~~~~~ 303 (1880)
.....++..+++.+.. +.+.+.+|+.+|.+++... ++. ....+..++..++..+.. -.+.. .
T Consensus 231 -~~~~~ll~~l~~~~l~------~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~-----~ 298 (1049)
T 3m1i_C 231 -IYETNILELLSTKFMT------SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTA-----D 298 (1049)
T ss_dssp -HHSSSHHHHHHTHHHH------SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTS-----C
T ss_pred -HhhhhHHHHHHHHhCC------CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcc-----c
Confidence 0112344444433322 2577889999999988742 221 122333333333321111 00000 0
Q ss_pred HhHhHhh--hChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCch
Q 000194 304 LLPRIAH--FLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE 381 (1880)
Q Consensus 304 ~i~~la~--~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~ 381 (1880)
..+.+.. ....+|.+.+ -.++..+... ...+... +..+.+++..+++.+..............
T Consensus 299 l~~~~~~~~~~d~~~~~~l-~~~~~~~~~~-------------~~~~~~~-~~~~~~~l~~~l~~ll~~~~~~d~~v~~~ 363 (1049)
T 3m1i_C 299 LKATYANANGNDQSFLQDL-AMFLTTYLAR-------------NRALLES-DESLRELLLNAHQYLIQLSKIEERELFKT 363 (1049)
T ss_dssp HHHHHHHTCTTHHHHHHHH-HHHHHHHHHH-------------HHHHHHS-CGGGHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHhccCCcchHHHHHHH-HHHHHHHHHH-------------HHHHHcC-ChhhHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 0000000 0001111111 1111111100 0001111 11234556666666665543322122345
Q ss_pred HHHHHHHHHHHh--CC----CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCC
Q 000194 382 ALACVGNIARAM--GP----VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQA 455 (1880)
Q Consensus 382 a~~~l~~la~~~--g~----~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~ 455 (1880)
++++|..+++.+ .+ .+.|++..+++.++. .-.+.
T Consensus 364 ~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~--------------------------------------~m~~~-- 403 (1049)
T 3m1i_C 364 TLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIE--------------------------------------NMVRP-- 403 (1049)
T ss_dssp HHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHH--------------------------------------TCCCC--
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH--------------------------------------hcCCC--
Confidence 777888777733 11 234444444433321 00010
Q ss_pred CCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC-ChHHHHHHHHHHHHhhhccC
Q 000194 456 RPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE-DKATRKDAALCCCKLVANSF 534 (1880)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~-~~~VR~aAa~~~~~l~~~~~ 534 (1880)
. +..+.+. |+ +..+. .+.++. ....|+++..++-.+....
T Consensus 404 --e-----------d~~~~~d-d~----------------~e~~r--------~~~~d~d~~~~~~~~~~~L~~l~~~~- 444 (1049)
T 3m1i_C 404 --E-----------EVLVVEN-DE----------------GEIVR--------EFVKESDTIQLYKSEREVLVYLTHLN- 444 (1049)
T ss_dssp --T-----------TCCEEEC-TT----------------SCEEE--------CSSCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred --c-----------ceeeeeC-CC----------------CcchH--------hhhccchHHHHHHHHHHHHHHHHccC-
Confidence 0 0001000 00 00000 111111 1245665554433332111
Q ss_pred CCccccccCCccccccccchhHHHHHHHHHHHHHHhc--CCChhHHHHHHHhccCC-CCcchhhc---cHhhHHHHHHHh
Q 000194 535 SGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA--DADVTVRHSIFSSLYGN-RGFDDFLA---QADCLSAIFAAL 608 (1880)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~--d~~~~vR~~~l~~l~~~-~~fd~~L~---~~~~l~~L~~~l 608 (1880)
...++..+++.+ ...+. +++|..|.+++.+++.- +.+..... .+.+++.+....
T Consensus 445 -------------------~~~~l~~v~~~l-~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 445 -------------------VIDTEEIMISKL-ARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp -------------------HHHHHHHHHHHH-HHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------HHHHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 012233333322 22232 46788888888877521 11111100 123444444322
Q ss_pred C-----CCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc------
Q 000194 609 N-----DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI------ 677 (1880)
Q Consensus 609 ~-----D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~------ 677 (1880)
. |+.+.||..++.++|+++...... ..++..++..++..+.+ ..++++..|+.+|..+++.++..+
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~--~~~~V~~~A~~al~~l~~~~~~~l~~~~~~ 581 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHE--THEGVQDMACDTFIKIVQKCKYHFVIQQPR 581 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHTHHHHSCCTT
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 1 456667777999999987643211 12344444444544443 468999999999999999877655
Q ss_pred --cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC--chhhhHHhHHHHHHHHHhc--------CC---
Q 000194 678 --RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF--GMRQYISELMPLIVEALLD--------GA--- 742 (1880)
Q Consensus 678 --~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~--~~~~~~~~l~p~l~~~l~d--------~~--- 742 (1880)
.||++.|+..+...+.+- ...-...++.|++.++...|+ ...+|+..+++.+++.+.. .+
T Consensus 582 ~~~p~~~~il~~l~~~~~~~-----~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 656 (1049)
T 3m1i_C 582 ESEPFIQTIIRDIQKTTADL-----QPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLL 656 (1049)
T ss_dssp CSSCHHHHHHHTHHHHHTTS-----CHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG
T ss_pred CCCcHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhc
Confidence 499999999998887753 444456778999999887773 5889999998887765431 00
Q ss_pred chh-hHH--HHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 743 AVT-KRE--VAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 743 ~~~-~r~--~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+.+ .+. ..+.+++.++...|..+.|+.. .++..++.+.+.- ...-.. .+...|... .
T Consensus 657 d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~--~i~~~~l~~~~~~--~~~~~~---~~~~~g~~~-~------------ 716 (1049)
T 3m1i_C 657 DSETVKIIANIIKTNVAVCTSMGADFYPQLG--HIYYNMLQLYRAV--SSMISA---QVAAEGLIA-T------------ 716 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHHH--HHHHHH---HHHHHCGGG-G------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHH--HHHHHH---HHHccCchh-h------------
Confidence 111 122 2356677777877776665542 2333333332210 000000 011111100 0
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHh---CCCCCCC
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM---GLGCVPY 896 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~---~~~~~~~ 896 (1880)
....-.+...+.+.++++++. ..... +..+.||
T Consensus 717 ----------------------------~~p~~~~~~~~~~~l~~ll~~----------------~~~~~~~l~~~~~~~ 752 (1049)
T 3m1i_C 717 ----------------------------KTPKVRGLRTIKKEILKLVET----------------YISKARNLDDVVKVL 752 (1049)
T ss_dssp ----------------------------GSHHHHHHHHHHHHHHHHHHH----------------HHHHCSCHHHHHHHT
T ss_pred ----------------------------hhHHHHHHHHHHHHHHHHHHH----------------HHHhCCCHHHHHHHH
Confidence 000001222333444443311 11111 1113477
Q ss_pred cchhhHHHHHHHhcCCcch-hHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhh----cC--CCCCcccccccchhHHHH
Q 000194 897 LPKVLPDLFHTVRTCDDYL-KDYITWKLGTLVSIVRQHIRKYLQELFSLISELW----SS--FSLPATNRTYRGLPVLHL 969 (1880)
Q Consensus 897 l~~iip~ll~~l~~~~~~~-~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~----~~--~~~~~~~~~~~~~~~l~~ 969 (1880)
++.++..++....+..+.. ...++..++.++..++.++.||++.++..+.+.. +. .+. +.+....+.+
T Consensus 753 ~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~-----pd~~~~~f~l 827 (1049)
T 3m1i_C 753 VEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEY-----PEHRVEFYKL 827 (1049)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSS-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhC-----HHHHHHHHHH
Confidence 8888888888776543332 2467788999999999999999999998887664 21 111 2223356777
Q ss_pred HHHHHHHhhhhhhcc----chhhHHHHHHhccc
Q 000194 970 VQQLCLALNDEFRTH----LPVILPCCIQVLSD 998 (1880)
Q Consensus 970 i~~l~~~l~~~f~~y----l~~l~p~ll~~l~~ 998 (1880)
+..+.......|.+. +..++...+..++.
T Consensus 828 l~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~ 860 (1049)
T 3m1i_C 828 LKVINEKSFAAFLELPPAAFKLFVDAICWAFKH 860 (1049)
T ss_dssp HHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 777776555555432 34455555666654
No 21
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.43 E-value=1.9e-09 Score=147.39 Aligned_cols=436 Identities=12% Similarity=0.103 Sum_probs=248.9
Q ss_pred HHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHh---cCCCChHhHHHHHHHHHHHHHhCccc------ccCchHHHH
Q 000194 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE---QSSADNKCREESAKLLGCLIRNCERL------IRPYIAPIH 685 (1880)
Q Consensus 615 VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~---~~~~~~~~r~~a~~~L~~l~~~~~~~------~~py~~~il 685 (1880)
.|.....++..++...|..+.+.+-..+...+.... .+ .+++.+|.++.+|+.+++.+... ..++++.++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~-~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPE-NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 455544555555555666666633333434443321 12 45888999999999999986542 235666777
Q ss_pred HHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHH--HHhcCCchhhHHHHHHHHHHHHhhcCc
Q 000194 686 KALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE--ALLDGAAVTKREVAVSTLGQVVQSTGY 763 (1880)
Q Consensus 686 ~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~--~l~d~~~~~~r~~Al~~Lg~l~~~~~~ 763 (1880)
+.+...+..+.....++.|+...+.++|..+...... ..|++.+++.+++ .+.+. +..+|..|..+|..+++.++.
T Consensus 493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhH
Confidence 6666666533212347889999999999888765432 3677788888877 66654 467899999999999999998
Q ss_pred ccccCCcchHHHHHHHHHhcCC----CCH----------------HHHHHHHHHHHHHc-ccC-ccchhhccccCCCccc
Q 000194 764 VITPYNEYPQLLGLLLKMLNGE----LVW----------------STRREVLKVLGIMG-ALD-PHAHKRNQQLSGSHGE 821 (1880)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~L~~~----~~~----------------~vr~~~l~~lg~lg-ald-p~~~~~~~~~~~~~~~ 821 (1880)
.+.||. +.++..+...|... ... +-+...+.++|.+- +.. |.-.+
T Consensus 571 ~L~~~~--~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~----------- 637 (980)
T 3ibv_A 571 QVVNYT--ESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQ----------- 637 (980)
T ss_dssp TCSSSH--HHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHH-----------
T ss_pred HhhhHH--HHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHH-----------
Confidence 888885 57888887777521 111 12333555555542 111 11000
Q ss_pred ccccCCCCCCCCCCCcccccccCCCCCCCcccchHHH----HHHHHHHhcCCChh-----hhHHHHHHHHHHHHHHhCCC
Q 000194 822 VTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVA----INSLMRILRDPSLA-----SYHQKVVGSLMFIFKSMGLG 892 (1880)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v----i~~Ll~~L~d~s~~-----~~~~~~~~al~~i~~~~~~~ 892 (1880)
..|...+ +..+-+.+...... ..| ..+.|+..+.+.....
T Consensus 638 ------------------------------~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~-~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 638 ------------------------------ALYCDSLINALIGKANAALSSDLSALENIISVY-CSLMAIGNFAKGFPAR 686 (980)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHH-HHHHHHHHHHHTSCSC
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHhhcccCccHHHHHH-HHHHHHHHHhccCCcc
Confidence 0011222 22233333221111 111 3466667777654332
Q ss_pred ------CCCCcchhhHHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccch
Q 000194 893 ------CVPYLPKVLPDLFHTVRT--CDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964 (1880)
Q Consensus 893 ------~~~~l~~iip~ll~~l~~--~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~ 964 (1880)
+...+.++++.++..+.. .+..+|+.+...+..++..+|..+.||+|+++..+........ ..
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e---------~~ 757 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE---------LV 757 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT---------HH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH---------HH
Confidence 122344677777777764 3456899999999999999999999999999999886555332 12
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhHHHHHHh----cccccccCc--hh---hH---HHHHHHHHH--Hhcch-h----hh
Q 000194 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQV----LSDAERCND--YT---YV---LDILHTLEV--FGGTL-D----EH 1025 (1880)
Q Consensus 965 ~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~----l~~~~~~~~--~~---~~---~~il~~l~~--~g~~~-~----~~ 1025 (1880)
..+.+++.+...++.++.+++..+++.++.. |+......| |. .. ...++++.. ++..+ . .+
T Consensus 758 ~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~ 837 (980)
T 3ibv_A 758 DVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVY 837 (980)
T ss_dssp HHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHH
Confidence 6899999999999999888888887776653 333211111 11 11 112222221 11111 1 12
Q ss_pred hhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc---c----ccchhHhHHHHHHHhhCCCCHHHH--------HHHHH
Q 000194 1026 MHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV---Q----VTGHISSLVHHLKLVLDGKNDELR--------KDAVD 1090 (1880)
Q Consensus 1026 ~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~---~----~~~~~~~ii~~l~~~l~~~~~~l~--------~~al~ 1090 (1880)
+..++-.++.....-.....++.|+..+.+++..- + |..|+=.+++....+..+++-+++ ..+..
T Consensus 838 l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~ 917 (980)
T 3ibv_A 838 FDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAG 917 (980)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Confidence 22233333332222234568899999999987652 1 444433355544555544433333 33444
Q ss_pred HHHHHHHHhccccccc
Q 000194 1091 ALCCLAHALGEDFTIF 1106 (1880)
Q Consensus 1091 ~L~~l~~~~g~~f~~f 1106 (1880)
++..+..+.|.+|..|
T Consensus 918 ~~k~~~~~~g~~~~~~ 933 (980)
T 3ibv_A 918 LQKIILEKLGDIYKSY 933 (980)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHH
Confidence 5555555666555433
No 22
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.41 E-value=6.6e-11 Score=154.93 Aligned_cols=428 Identities=14% Similarity=0.100 Sum_probs=264.0
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~ 151 (1880)
+.+.+-++++++..|..|+.++..+.. +.....+.+.+..++. +.++.|++.|+.+++++..... +.++
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~------~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p----~~~~ 157 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINA----QMVE 157 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCS------GGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSC----CCHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhhCh----hhcc
Confidence 445556677788778777777666631 2234455667888885 6789999999999999998532 2333
Q ss_pred --HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Q 000194 152 --FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKR 228 (1880)
Q Consensus 152 --~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~-l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1880)
..++.+.+.|. +.+...|.+|+.+|.+++...|.. .....+..+..++..+.|.++.++....++++.+. ..
T Consensus 158 ~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~----~~ 232 (591)
T 2vgl_B 158 DQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYN----PK 232 (591)
T ss_dssp HHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC----CC
T ss_pred cccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhC----CC
Confidence 34566666664 667788999999999999988765 45566777888888888888888766666554321 11
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc---chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN---TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~---~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
+ ......+++.+...+.+.+ ..++..|+.++..+... ..+.+......+...++... ++++.||..++.++
T Consensus 233 ~----~~~~~~~l~~l~~~l~~~~-~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l 306 (591)
T 2vgl_B 233 D----DREAQSICERVTPRLSHAN-SAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNI 306 (591)
T ss_dssp S----HHHHHHHHHHHTTCSCSST-THHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred C----hHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHH
Confidence 1 1234567777777777664 57888888887776542 23444444455555555444 47899999999999
Q ss_pred HhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHH
Q 000194 306 PRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEAL 383 (1880)
Q Consensus 306 ~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~ 383 (1880)
..++...|+.|.+ ++..+ . ++.+.. .|..|+..++.++..- -++.+++.+.+.+.+.+...+..++
T Consensus 307 ~~i~~~~p~~~~~-~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~~~------nv~~iv~~L~~~l~~~d~~~r~~~v 374 (591)
T 2vgl_B 307 NLIVQKRPEILKQ-EIKVF----F-VKYNDPIYVKLEKLDIMIRLASQA------NIAQVLAELKEYATEVDVDFVRKAV 374 (591)
T ss_dssp HHHHHHCCSTTTT-CTTTT----S-CCTTSCHHHHHHHHHHHHHTCCSS------THHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHhChHHHHH-HHHhh----e-eccCChHHHHHHHHHHHHHHCChh------hHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9998877765432 22211 1 111111 3567777777665222 2456777788877654333345788
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 000194 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATP 461 (1880)
Q Consensus 384 ~~l~~la~~~g~~~~~~l~~ll~~l~~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~ 461 (1880)
.+++.++..+++....+++.+++.+-..+ ...+...++..+....|.....+...+.+.+.
T Consensus 375 ~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~----------------- 437 (591)
T 2vgl_B 375 RAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLD----------------- 437 (591)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTT-----------------
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHH-----------------
Confidence 89998887765444556666555443322 22233446666666677654443333332211
Q ss_pred CCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccc
Q 000194 462 IRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQ 541 (1880)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~ 541 (1880)
+..+.+....++.+||+|.-.-..-.+.++.. ..-+.+.++.||.++..++.+++...+..
T Consensus 438 -------------~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l-~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~----- 498 (591)
T 2vgl_B 438 -------------SLDEPDARAAMIWIVGEYAERIDNADELLESF-LEGFHDESTQVQLTLLTAIVKLFLKKPSE----- 498 (591)
T ss_dssp -------------TCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH-STTCSSSCHHHHHHHHHHHHHHHTTCCST-----
T ss_pred -------------hccCHHHHHHHHHHHHcccccccCHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHhcCchH-----
Confidence 11123345678899999832111111222222 22233457899999999999988644310
Q ss_pred cCCccccccccchhHHHHHHHHHHHHHHhcC-CChhHHHHHHHhc
Q 000194 542 FGASRSNRTGGKRRRLIEELVEKLLIAAVAD-ADVTVRHSIFSSL 585 (1880)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d-~~~~vR~~~l~~l 585 (1880)
....+..++..+..| +|++||..+...+
T Consensus 499 ----------------~~~~i~~ll~~~~~d~~d~evrdRA~~y~ 527 (591)
T 2vgl_B 499 ----------------TQELVQQVLSLATQDSDNPDLRDRGYIYW 527 (591)
T ss_dssp ----------------THHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhhhcCCChHHHHHHHHHH
Confidence 123344555555555 6788888877765
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.39 E-value=2.1e-10 Score=150.19 Aligned_cols=498 Identities=11% Similarity=0.106 Sum_probs=296.5
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 000194 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1880)
Q Consensus 157 ~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1880)
+-+-|.+.....++.+...++..+..|-+ ++..++.++..+.++++.+|+.+.-++..+.+. .++.
T Consensus 18 i~~~L~~~~~~~k~~~~~kli~~~~~G~d------~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--------~~e~ 83 (591)
T 2vgl_B 18 LKAELNNEKKEKRKEAVKKVIAAMTVGKD------VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--------QPDM 83 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHTTCC------CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--------SHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCC------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--------CchH
Confidence 33344444445566666666665555532 233455566788999999999999988876542 1233
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 237 ~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
...+.+.+...+.+++ ..+|..|+.+++.+ ....+.+ .+++.+...+.++++.||+.|+.++..++...++..
T Consensus 84 ~~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i---~~~~~~~---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 84 AIMAVNSFVKDCEDPN-PLIRALAVRTMGCI---RVDKITE---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHTTHHHHGGGSSSSS-HHHHHHHHHHHHTC---CSGGGHH---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHHHcC---ChHHHHH---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 3445567777788765 56677766555543 2222332 355667777889999999999999999998777643
Q ss_pred HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 317 VTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~-~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
.+ ...++.+...|.+++ .+..|+.+|+.++..-++. ..+..+..+..+...+.+.++-.+..++.++ ..+
T Consensus 157 ~~---~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l----~~l 229 (591)
T 2vgl_B 157 ED---QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCL----SNY 229 (591)
T ss_dssp HH---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH----HTS
T ss_pred cc---ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHH----HHh
Confidence 21 467888888887543 4788999999987665432 2233344444444444322110011233333 234
Q ss_pred CCCchHHHHHHHHHHHhc--CCCHH-HHHHHHHHHHhC------CCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000194 394 GPVMEPHVRGLLDIMFSA--GLSTT-LVDALEQITVSI------PSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464 (1880)
Q Consensus 394 g~~~~~~l~~ll~~l~~~--~ls~~-l~~~l~~i~~~~------p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 464 (1880)
++.-.+....+++.+... ..++. ..+|...+..-. |.....+.+++...+...+.
T Consensus 230 ~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---------------- 293 (591)
T 2vgl_B 230 NPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---------------- 293 (591)
T ss_dssp CCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT----------------
T ss_pred CCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc----------------
Confidence 443334556666666543 12223 335555555422 22333333333322221111
Q ss_pred CccCCCccccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccC
Q 000194 465 NVMNIPQQVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFG 543 (1880)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~Al~~L~~~~-~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~ 543 (1880)
.+......|+++|+.+. ..+..+.+++.. +....+ ++..||+.|...+..+....
T Consensus 294 ------------~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~-~~~~~~-d~~~Ir~~al~~L~~l~~~~---------- 349 (591)
T 2vgl_B 294 ------------GEPEVQYVALRNINLIVQKRPEILKQEIKV-FFVKYN-DPIYVKLEKLDIMIRLASQA---------- 349 (591)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHCCSTTTTCTTT-TSCCTT-SCHHHHHHHHHHHHHTCCSS----------
T ss_pred ------------CCccHHHHHHHHHHHHHHhChHHHHHHHHh-heeccC-ChHHHHHHHHHHHHHHCChh----------
Confidence 12334567888888762 223333333332 122223 34899998887666543110
Q ss_pred CccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHH
Q 000194 544 ASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISV 622 (1880)
Q Consensus 544 ~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~ 622 (1880)
-+..++..|.. .+.+.|.++|..++.+++. +..|.+. ...+++.|...+.|....|+..++..
T Consensus 350 -------------nv~~iv~~L~~-~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 350 -------------NIAQVLAELKE-YATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp -------------THHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHH
Confidence 13455655554 3578899999999888852 1233211 23578999999999999999999999
Q ss_pred HHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCCh
Q 000194 623 AGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702 (1880)
Q Consensus 623 l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1880)
++.+...+|......+. .+...++.. .++..+..++|+||+.+...++ .+.+++.++..+.+. ++
T Consensus 414 l~~ii~~~p~~~~~~v~----~L~~~l~~~-~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~-----~~ 478 (591)
T 2vgl_B 414 IRDIFRKYPNKYESIIA----TLCENLDSL-DEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDE-----ST 478 (591)
T ss_dssp HHHHHHHSCSSCCTTHH----HHHHTTTTC-CSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSS-----CH
T ss_pred HHHHHHHCcchHHHHHH----HHHHHHHhc-cCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccC-----CH
Confidence 99998888764211111 222233444 5678888999999988765543 356666666655543 67
Q ss_pred hHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHH-hcCCchhhHHHHHHHHHHH
Q 000194 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL-LDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l-~d~~~~~~r~~Al~~Lg~l 757 (1880)
.++..++.++..+....++.. ...+..+++.. .|..+.++|+-|...++-+
T Consensus 479 ~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 479 QVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 889888888888876655433 23444455544 4656778999988776654
No 24
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.38 E-value=3.2e-10 Score=148.85 Aligned_cols=429 Identities=15% Similarity=0.085 Sum_probs=255.5
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH
Q 000194 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1880)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~ 152 (1880)
.+.+++.+++...|+-|-+++..+..-. +....-..+.+.+-+. +.++.++..|.+++|.+.. +++++.
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~----~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i~~------~~~~~~ 142 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDER----QDVHLLMTNCIKNDLN-HSTQFVQGLALCTLGCMGS------SEMCRD 142 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHS-CSSSHHHHHHHHHHHHHCC------HHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcCC------HHHHHH
Confidence 3446777889888888888888886542 2333445677777775 5688999999999999863 456666
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh
Q 000194 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW 232 (1880)
Q Consensus 153 ~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~ 232 (1880)
.++.+...+.+ .++..|.+|+.++..+....|+.+. .+++.+...|.|+++.|+.+|..++..+... .+..
T Consensus 143 l~~~l~~~L~~-~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~----~~~~ 213 (618)
T 1w63_A 143 LAGEVEKLLKT-SNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCER----SPDM 213 (618)
T ss_dssp HHHHHHHHHHS-CCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS----HHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh----ChHH
Confidence 66666666654 5678899999999999999998654 5566667888999999999999998876421 1100
Q ss_pred HHHHHHHHHHHHHhhcc---------------CCCChhHHHHHHHHHHHHHHcchh---hhH------------------
Q 000194 233 RVQWYYRMFEATQDGLG---------------RNAPVHSIHGSLLAVGELLRNTGE---FMM------------------ 276 (1880)
Q Consensus 233 ~~~~~~~~l~~~~~~l~---------------~~~~~~~~~~al~~l~~ll~~~~~---~~~------------------ 276 (1880)
...+..+.+.+...|. .+++|- +...+.+|+.+....++ .+.
T Consensus 214 -~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 214 -LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL-QVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp -HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH-HHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHH
Confidence 1112222222221111 011222 11122222222211100 000
Q ss_pred ----------------HH-HHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--C
Q 000194 277 ----------------SR-YREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--E 337 (1880)
Q Consensus 277 ----------------~~-~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~ 337 (1880)
+. .......+..++.++++.||..++.++..++...|..|. .| ...++.++.++. .
T Consensus 292 aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-~~----~~~i~~~l~d~d~~I 366 (618)
T 1w63_A 292 AILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-RH----RSTIVDCLKDLDVSI 366 (618)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-GG----HHHHHHGGGSSCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH-HH----HHHHHHHccCCChhH
Confidence 11 112334444556667777888887777777765554332 23 334445555433 3
Q ss_pred cchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCH
Q 000194 338 RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG--LST 415 (1880)
Q Consensus 338 r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~--ls~ 415 (1880)
|..|++++..++..- . ++.++..+.+.+.+.+.+.+..++.+++.+|..+.+.+..|++.++..+-..+ ...
T Consensus 367 r~~alelL~~l~~~~--n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~ 440 (618)
T 1w63_A 367 KRRAMELSFALVNGN--N----IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRD 440 (618)
T ss_dssp HHHHHHHHHHHCCSS--S----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCS
T ss_pred HHHHHHHHHHHcccc--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHH
Confidence 667777777765421 1 23445555555543333334578999999999998888899999887665544 455
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccccc-
Q 000194 416 TLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNF- 494 (1880)
Q Consensus 416 ~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~- 494 (1880)
+....+..+....|.+...+...+.+.+..- .........++..||+|.-
T Consensus 441 ~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~-----------------------------~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 441 DAVPNLIQLITNSVEMHAYTVQRLYKAILGD-----------------------------YSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp SHHHHHHHHHHHSCSTHHHHHHHHHHHHHHC-----------------------------CSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHhcc-----------------------------cccHHHHHHHHHHHhhhHHH
Confidence 5677888888889988877777777666410 0011133458889998831
Q ss_pred -C-C-------Ccchh-hHHHHHhhhcc--CCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHH
Q 000194 495 -K-G-------HDLLE-FARDSVVLYLD--DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELV 562 (1880)
Q Consensus 495 -~-~-------~~l~~-~v~~~~~~~l~--~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 562 (1880)
. | ....| .+.+.+..++. ..++.||.++..++.+++...+. . .+.+
T Consensus 492 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~------------------~----~~~l 549 (618)
T 1w63_A 492 LVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC------------------T----VNRI 549 (618)
T ss_dssp HTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS------------------C----HHHH
T ss_pred hcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc------------------h----HHHH
Confidence 0 0 00101 11122222332 45789999888888888764431 1 2233
Q ss_pred HHHHHHHhcCCChhHHHHHHHhc
Q 000194 563 EKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
..++.....|+|.+||..+...+
T Consensus 550 ~~~L~~~~~~~d~evrdRA~~y~ 572 (618)
T 1w63_A 550 KKVVSIYGSSIDVELQQRAVEYN 572 (618)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444445667777777666654
No 25
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.35 E-value=4.1e-08 Score=128.32 Aligned_cols=501 Identities=13% Similarity=0.101 Sum_probs=303.4
Q ss_pred ChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcc
Q 000194 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFD 592 (1880)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~fd 592 (1880)
.++.|..|+.++.+++..... . .......+.+++++..-+..++.+-...++.+++. ...++
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~ 280 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYY-------D---------EAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLD 280 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCS-------H---------HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHH
T ss_pred ChhHHHHHHHHHHHHHHHhcc-------c---------hhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHH
Confidence 457898888888888853321 0 12344566666666666666665555444444421 11111
Q ss_pred h---hhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHH
Q 000194 593 D---FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCL 669 (1880)
Q Consensus 593 ~---~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l 669 (1880)
. .+.....++.+...++.++..++..|+++++.++.. +.. --.+++.=.+.|..+-.+ ++...|..|+..|..+
T Consensus 281 ~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~-R~~I~~~gv~~L~~Ll~s-~~~~vr~~Al~~L~kl 357 (810)
T 3now_A 281 VGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDK-AKALCEQGVDILKRLYHS-KNDGIRVRALVGLCKL 357 (810)
T ss_dssp HHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHH-HHTTHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHH-HHHHHHcCcHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 1 111335688888888888999999999999997664 321 111111112444555445 5678899999999998
Q ss_pred HHhCc--ccccCc----hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH---HhHHHHHHHHHhc
Q 000194 670 IRNCE--RLIRPY----IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI---SELMPLIVEALLD 740 (1880)
Q Consensus 670 ~~~~~--~~~~py----~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~---~~l~p~l~~~l~d 740 (1880)
..... ...+++ +.++++.|.+.+.++. .+.+++..++.+|..|+... .....+ ..++|.+++.+..
T Consensus 358 ~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~---~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL~s 432 (810)
T 3now_A 358 GSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG---KDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLARG 432 (810)
T ss_dssp HTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS---CCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHHHT
T ss_pred ccccccCccccchhhccHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHhCC
Confidence 75432 122333 5688888999888641 26778999999999986432 222222 3588999998885
Q ss_pred CCchhhHHHHHHHHHHHHhhcCcc--------cccCCcc-----------------------hHHHHHHHHHhcCCCCHH
Q 000194 741 GAAVTKREVAVSTLGQVVQSTGYV--------ITPYNEY-----------------------PQLLGLLLKMLNGELVWS 789 (1880)
Q Consensus 741 ~~~~~~r~~Al~~Lg~l~~~~~~~--------i~p~~~~-----------------------p~ll~~Ll~~L~~~~~~~ 789 (1880)
. +......|+++|+.++...... +.-|... ...++.|..+++++ ++.
T Consensus 433 ~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s~~ 510 (810)
T 3now_A 433 G-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-SHN 510 (810)
T ss_dssp T-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-CHH
T ss_pred C-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-CHH
Confidence 4 5667889999999998754210 0001000 13678888888764 789
Q ss_pred HHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCC
Q 000194 790 TRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP 869 (1880)
Q Consensus 790 vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~ 869 (1880)
+|..+.++|+.+.. ++.....+ ...-+++.|+..|++.
T Consensus 511 vqe~Aa~aL~NLA~-d~~~r~~V-----------------------------------------v~~Gaip~Lv~LL~s~ 548 (810)
T 3now_A 511 SQELIARVLNAVCG-LKELRGKV-----------------------------------------VQEGGVKALLRMALEG 548 (810)
T ss_dssp HHHHHHHHHHHHHT-SHHHHHHH-----------------------------------------HHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcC-CHHHHHHH-----------------------------------------HHCCCHHHHHHHHccC
Confidence 99999999998852 22100000 0112567888888877
Q ss_pred ChhhhHHHHHHHHHHHHHHhCCCC-CC--CcchhhHHHHHHHhcCCcc-hhHHHHHHHHHHHHH---HHHhHH--HhHHH
Q 000194 870 SLASYHQKVVGSLMFIFKSMGLGC-VP--YLPKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSI---VRQHIR--KYLQE 940 (1880)
Q Consensus 870 s~~~~~~~~~~al~~i~~~~~~~~-~~--~l~~iip~ll~~l~~~~~~-~~~~~~~~l~~lv~~---~~~~i~--~y~~~ 940 (1880)
+.. ....+..|+..+.....+.. .+ -....+|.|+..+...... .+..++..|+.+... .++.+. ..+|.
T Consensus 549 ~~~-~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 549 TEK-GKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK 627 (810)
T ss_dssp CHH-HHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred CHH-HHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 643 45678889998887643321 11 1234789999888744232 334566777776642 233332 34566
Q ss_pred HHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccc--hhhHHHHHHhcccccccCchhhHHHHHHHHHHH
Q 000194 941 LFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHL--PVILPCCIQVLSDAERCNDYTYVLDILHTLEVF 1018 (1880)
Q Consensus 941 i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl--~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~ 1018 (1880)
++.++.. .+ +..+.....++..++.. .+....+. ...+|.++..++..+.. -+..+..++..+...
T Consensus 628 Lv~LL~s----~~------~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~-vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 628 IEYYLME----DH------LYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEE-TATACAGALAIITSV 695 (810)
T ss_dssp HHHHHHS----CC------TTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHcC----CC------HHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHH-HHHHHHHHHHHHhCC
Confidence 6666542 21 11233677777777642 22333344 36889999999753211 122233344433331
Q ss_pred hc-chhhhh--hhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc-ccch--hHhHHHHHHHhhCCC---CHHHHHHHH
Q 000194 1019 GG-TLDEHM--HLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ-VTGH--ISSLVHHLKLVLDGK---NDELRKDAV 1089 (1880)
Q Consensus 1019 g~-~~~~~~--~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~~~-~~~~--~~~ii~~l~~~l~~~---~~~l~~~al 1089 (1880)
.. .....+ .-.+|.+++++..+ ..++|..|+.++..++.+.+ ...+ -..++++|..++... +.++.+.|+
T Consensus 696 s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al 774 (810)
T 3now_A 696 SVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT 774 (810)
T ss_dssp CHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHH
Confidence 11 122222 35789999999764 78899999999999876421 1111 124577888888654 578999999
Q ss_pred HHHHHHHH
Q 000194 1090 DALCCLAH 1097 (1880)
Q Consensus 1090 ~~L~~l~~ 1097 (1880)
++|..+..
T Consensus 775 ~aL~~ll~ 782 (810)
T 3now_A 775 QCLAAAER 782 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988864
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.33 E-value=9.3e-08 Score=125.02 Aligned_cols=715 Identities=10% Similarity=0.057 Sum_probs=384.9
Q ss_pred HHHHHHHHHHHcCCC--Cchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhc
Q 000194 23 LDALNRILADLCTHG--NPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELID 98 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~--~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~ 98 (1880)
+.-+++.|+=+.+.. .+++ +|+.-|-- .+||-.+-. .-|-+.-..++.+++++ ++.+...+|+-.++.++.
T Consensus 5 ~~kv~~m~~i~~~~~~~~~~~~~a~~nl~v----l~re~aga~-~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 79 (810)
T 3now_A 5 STKVKQMMDLTFDLATPIDKRRAAANNLVV----LAKEQTGAE-LLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCE 79 (810)
T ss_dssp HHHHHHHHHHHHSSCCSSHHHHHHHHHHHH----HSSCHHHHH-HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcccccCHHHHHHHHhhcee----eeccccchH-HHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 455777777776443 2333 47554433 345532221 11223345677888877 788899999999999986
Q ss_pred cccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCCc------h-------hHHHHHHHHHHhhhc
Q 000194 99 VALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMT------A-------DEVEFQVKMALDWLR 162 (1880)
Q Consensus 99 ~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~--~g~~~------~-------~~v~~~~~~~~~~l~ 162 (1880)
.........+..+ .+++..++. +.+.++...++.++..+..+ |+... . .-+...+..+++-+.
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (810)
T 3now_A 80 NSVERTKGVLTELGVPWFMRVLD-QKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSIT 158 (810)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHH-CCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhh
Confidence 6311111111111 245666664 56888888888888877553 32221 1 123334444444454
Q ss_pred CCC-cchhHHHHHHHHHHHHhhcCccchh----ch-HHHHHHHHH---HhcCC--------chhHHHHHHHHHHHHHHHH
Q 000194 163 GDR-VEYRRFAAVLILKEMAENASTVFNV----HV-AEFVDAIWV---ALRDP--------TLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 163 ~~~-~~~~R~aA~~~l~~la~~~p~~l~~----~l-~~i~~~i~~---~l~D~--------~~~VR~aA~~al~~~~~~i 225 (1880)
+.+ ....|-+++.+ +..+.|..-.. .+ ..=+..++. .+-+. .+..|..|.-++..+.+.+
T Consensus 159 ~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~ 235 (810)
T 3now_A 159 DRTISGAARDGVIEL---ITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENM 235 (810)
T ss_dssp CTTSCHHHHHHHHHH---HHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTC
T ss_pred ccccChhhHHHHHHH---HHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHh
Confidence 433 23456666555 45555542110 00 001112222 22232 3578999988888876654
Q ss_pred hhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHHH
Q 000194 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSITS 303 (1880)
Q Consensus 226 ~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~Vr~~~~~ 303 (1880)
.- ...+..+...+-+-+...+..++ .+..-.|.-++..++....+.-..-+ +..++.++.++.+.++.+|+.+++
T Consensus 236 ~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~ 312 (810)
T 3now_A 236 YY--DEAKARFTDQIDEYIKDKLLAPD-MESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACE 312 (810)
T ss_dssp CS--HHHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cc--chhHHHHHHHHHHHHHHHhccCC-hHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHH
Confidence 31 11233333333333344454443 45556667788777776554333322 246778888889999999999999
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh--hhhh----hhHHHHHHHHhhcCC-
Q 000194 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE--LFHY----LPTITSHLREAIAPR- 374 (1880)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~--~~p~----l~~i~~~l~~~l~~~- 374 (1880)
+++.++.. + ...+.....-++.|...+++.. .|..|..+|..++...+.+ ..++ ++++++.+...|...
T Consensus 313 al~~aa~~-~-~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~ 390 (810)
T 3now_A 313 CLIAASSK-K-DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG 390 (810)
T ss_dssp HHHHHTTS-H-HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCC-c-HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCC
Confidence 99997654 2 2222122223488888887543 3667888888887543311 1122 456778888888655
Q ss_pred -CCCCCchHHHHHHHHHHHhCCCchHHH---HHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000194 375 -RGKPSLEALACVGNIARAMGPVMEPHV---RGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1880)
Q Consensus 375 -~~~~~~~a~~~l~~la~~~g~~~~~~l---~~ll~~l~~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1880)
+.+.+..++.+++.++. ++.....+ ..++|.|+.. +. . -.+.++.+.+..+..+..+.
T Consensus 391 ~d~~v~~~AveaLayLS~--~~~vk~~lv~d~g~Ip~LV~L---------L~----s---~d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 391 KDKDIRRWAADGLAYLTL--DAECKEKLIEDKASIHALMDL---------AR----G---GNQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp CCSSHHHHHHHHHHHHTT--SHHHHHHHHHCHHHHHHHHHH---------HH----T---TCGGGHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhC--CcHHHHHHHHccchHHHHHHH---------hC----C---CChHHHHHHHHHHHHHcCCc
Confidence 33344567888887754 22222211 1344444321 11 0 01234445555555443332
Q ss_pred CCCCCCCCCCC-C-CCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHH
Q 000194 451 HYSQARPAATP-I-RGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCK 528 (1880)
Q Consensus 451 ~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~ 528 (1880)
.-. .+.+... . .......+. ....++.+....=++.+..- | +-..+..++.++++.+|..|+.+++.
T Consensus 453 d~q-~~~~~l~~la~~s~~~v~~-~~~ld~~~~v~~r~~~Vvea---G------aVp~LV~LL~s~s~~vqe~Aa~aL~N 521 (810)
T 3now_A 453 EKQ-EMLPEMIELAKFAKQHIPE-EHELDDVDFINKRITVLANE---G------ITTALCALAKTESHNSQELIARVLNA 521 (810)
T ss_dssp CCC-CCCCSCGGGTTTTCCSCCC-SSCHHHHHHHHHHHHHHHHT---T------HHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhh-hhhHHHHHHHHHhhccCcc-ccccccHHHHHHHHHHHHHC---c------CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 110 0000000 0 000000000 00000000000000111110 1 11233466788899999999999988
Q ss_pred hhhccCCCccccccCCccccccccchhHHH-HHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhh---c--cHhhH
Q 000194 529 LVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFL---A--QADCL 601 (1880)
Q Consensus 529 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~fd~~L---~--~~~~l 601 (1880)
+... .. ....++ ..+++.|+.. +.+.++.+|..+..+|.. +..-++.. . ..+.+
T Consensus 522 LA~d-~~-----------------~r~~Vv~~Gaip~Lv~L-L~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI 582 (810)
T 3now_A 522 VCGL-KE-----------------LRGKVVQEGGVKALLRM-ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582 (810)
T ss_dssp HHTS-HH-----------------HHHHHHHTTHHHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred HcCC-HH-----------------HHHHHHHCCCHHHHHHH-HccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence 8631 10 011111 2345555554 356677788777776631 00001111 0 12468
Q ss_pred HHHHHHhCCC-CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCc
Q 000194 602 SAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680 (1880)
Q Consensus 602 ~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py 680 (1880)
+.|...++.+ +...+..|+.+|..|+..++....-....-.+..+..+..+ ++...+..|+++|+.++... +....+
T Consensus 583 ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s-~~~~Vq~~A~~~L~NLa~~~-~~~~~~ 660 (810)
T 3now_A 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME-DHLYLTRAAAQCLCNLVMSE-DVIKMF 660 (810)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-CCTTHHHHHHHHHHHHTTSH-HHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhCCh-HHHHHH
Confidence 8888888744 44456679999999998764321111111111223333344 56788999999999998532 222233
Q ss_pred h--HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH--hHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 681 I--APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 681 ~--~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
+ ...++.|+..+... +..++..++.+|+.++..........+. ..+|.++..+.+. +.+.+..|+++|+.
T Consensus 661 v~~~g~l~~Lv~LL~s~-----d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~N 734 (810)
T 3now_A 661 EGNNDRVKFLALLCEDE-----DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILN 734 (810)
T ss_dssp HSSSSHHHHHHHGGGCS-----SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHhcCC-----CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 3 24677888877764 7789999999999998743333444443 5889999988865 67899999999999
Q ss_pred HHhhcCcccccCCcchHHHHHHHHHhcCC--CCHHHHHHHHHHHHH---HcccCccc
Q 000194 757 VVQSTGYVITPYNEYPQLLGLLLKMLNGE--LVWSTRREVLKVLGI---MGALDPHA 808 (1880)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~--~~~~vr~~~l~~lg~---lgaldp~~ 808 (1880)
++...+.. .-+..-...++.|.++++.. .+.++...|+++|.. .|.++|..
T Consensus 735 L~~~s~e~-~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~~~ 790 (810)
T 3now_A 735 MINAGEEI-AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSD 790 (810)
T ss_dssp HHTTCHHH-HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHhCCHHH-HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccCCC
Confidence 98753321 11111135778888887543 367788777777654 46666653
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.33 E-value=3.7e-11 Score=152.93 Aligned_cols=356 Identities=14% Similarity=0.101 Sum_probs=234.4
Q ss_pred hhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHH--HHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE--ELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
..+.++++.+|..|+.++.+++..... ......+. .+++.|+.....+.++.+|..++.+|.
T Consensus 27 ~~l~s~~~~~r~~A~~~L~~l~~~~~~----------------~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~ 90 (450)
T 2jdq_A 27 EMIFSKSPEQQLSATQKFRKLLSKEPN----------------PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLT 90 (450)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHSSSS----------------CCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCC----------------CcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 445677899999999999887642210 00122222 466666665444448999999888874
Q ss_pred CCCC----cchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHH
Q 000194 587 GNRG----FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREE 661 (1880)
Q Consensus 587 ~~~~----fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~ 661 (1880)
.-.. ....+.....++.|+..++++++++|..|+.+|+.++...+..-...+. ..+..++.-+..+ .+...|..
T Consensus 91 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~ 169 (450)
T 2jdq_A 91 NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRN 169 (450)
T ss_dssp HHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHH
T ss_pred HHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHH
Confidence 2000 0011223457899999999999999999999999999877532111111 1122233334433 57889999
Q ss_pred HHHHHHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHHHh
Q 000194 662 SAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALL 739 (1880)
Q Consensus 662 a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~l~ 739 (1880)
|+++|+.++... +..-..++..+++.++..+.++ ++.++..++.+++.++....+...... ..++|.+++.+.
T Consensus 170 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS-----DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp HHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence 999999999765 3333344567778888888764 678888999999888754322221111 357889999888
Q ss_pred cCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 740 d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+. +..+|..|+.+|+.++...+........ ..+++.|..+++++ ++.+|.+++.+||.++.-.+...+
T Consensus 245 ~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~--------- 312 (450)
T 2jdq_A 245 HN-DYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQ--------- 312 (450)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred CC-chhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence 65 5789999999999998754332111111 25888899999764 789999999999988642111000
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCc--
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL-- 897 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l-- 897 (1880)
......+++.|+..|++++. ..+..++.++..+.....+....++
T Consensus 313 --------------------------------~~~~~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 313 --------------------------------TVIDANIFPALISILQTAEF-RTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp --------------------------------HHHHTTHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred --------------------------------HHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00011356677888877653 4566788888888765332222222
Q ss_pred chhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000194 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1880)
Q Consensus 898 ~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1880)
..++|.++..++..++.++..++..++.++....
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 3589999999988888899999999998887544
No 28
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.32 E-value=4e-11 Score=137.92 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=160.6
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l 241 (1880)
++++|..|.+|+..|..+++++|....+.+.++++.+...+. |++..||.+|+.+++.+...+.. ....++..++
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~----~~~~~~~~il 100 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK----RFSNYASACV 100 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG----GGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHH
Confidence 468899999999999999999888766778899999999995 99999999999999999876542 2345788999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh-hhChhhHHHHH
Q 000194 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA-HFLRDRFVTNY 320 (1880)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la-~~~~~~f~~~y 320 (1880)
+.+...+++++ ..+|.++..++..+....+ ++.+++.++..++++++.||..++..|+.++ .+.++.+...|
T Consensus 101 p~ll~~l~d~~-~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 101 PSLLEKFKEKK-PNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHHGGGCCC-HHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 99999999875 6889999999999987543 4678888888999999999999999999965 44455444568
Q ss_pred HHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhhHH
Q 000194 321 LKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTI 363 (1880)
Q Consensus 321 l~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~-~~p~l~~i 363 (1880)
++.++|.+...|.+.. .|..|+.++|.++..+|.+ +.+|++.+
T Consensus 174 l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 9999999999996543 6899999999999999986 77888654
No 29
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.32 E-value=2.7e-09 Score=145.89 Aligned_cols=394 Identities=10% Similarity=0.131 Sum_probs=241.6
Q ss_pred ChHhHHHHHHHHHHHHHh------CcccccCchHHHHHHHHHHhccCCC-----CC-C--------Chh-HH--HHHHHH
Q 000194 655 DNKCREESAKLLGCLIRN------CERLIRPYIAPIHKALVARLLEGTG-----IN-A--------NNG-II--SGVLVT 711 (1880)
Q Consensus 655 ~~~~r~~a~~~L~~l~~~------~~~~~~py~~~il~~ll~~l~~~~~-----~~-~--------~~~-v~--~~~~~~ 711 (1880)
+.+.-..++.....+++. ....++|++..++.+++.++..+.. .+ . +.+ .. ...-.+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 444434566666666643 2345678888889999988876531 00 0 111 10 111256
Q ss_pred HHHHHHhcCCchhhhHHhHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhcCcc-cccCCcchHHHHHHHHHhcC----C
Q 000194 712 VGDLARVGGFGMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLLLKMLNG----E 785 (1880)
Q Consensus 712 l~~La~~~g~~~~~~~~~l~p~l~~~l~d-~~~~~~r~~Al~~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll~~L~~----~ 785 (1880)
+..++...|.+ -+..+++.+.+.+.. ..++..|++|+.++|.++.+.... ..|+ .|++++.|++++.. +
T Consensus 437 L~~l~~l~~~~---~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~--l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVID---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRF--VVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHH---HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHH--HHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHH--HHHHHHHHHHhhhccccCc
Confidence 66666665542 333445555555543 246889999999999998765432 2333 47889988887753 1
Q ss_pred CCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHH
Q 000194 786 LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRI 865 (1880)
Q Consensus 786 ~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~ 865 (1880)
....+|..++.++|...- +.. ...+ |...+++.|+..
T Consensus 512 ~k~~v~~t~~~~lGry~~---wl~---------------------------------------~~~~-~L~~vl~~L~~~ 548 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPR---FLK---------------------------------------AHWN-FLRTVILKLFEF 548 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHH---HHH---------------------------------------HCHH-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH---HHh---------------------------------------ccHH-HHHHHHHHHHHH
Confidence 223455566677765421 110 0112 346788899999
Q ss_pred hcCCChhhhHHHHHHHHHHHHHHhCCCC--------CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH--hHH
Q 000194 866 LRDPSLASYHQKVVGSLMFIFKSMGLGC--------VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQ--HIR 935 (1880)
Q Consensus 866 L~d~s~~~~~~~~~~al~~i~~~~~~~~--------~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~--~i~ 935 (1880)
|.|+.. ....+++.|+..++..++..+ .||+++++..+......-++..+..++.++|.++..++. ...
T Consensus 549 l~~~~~-~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~ 627 (1023)
T 4hat_C 549 MHETHE-GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERN 627 (1023)
T ss_dssp TTCSCH-HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred hhcCCH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHH
Confidence 977643 356789999999999876543 479999999888888766666778889999999987752 355
Q ss_pred HhHHHHHHHHHHhhcCCC-----CCcc----cccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh
Q 000194 936 KYLQELFSLISELWSSFS-----LPAT----NRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT 1006 (1880)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~-----~~~~----~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~ 1006 (1880)
.++..+++.+.+.|+... .|.- +.......++++...++.++|..|.||+..++|.+++..+...
T Consensus 628 ~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s------ 701 (1023)
T 4hat_C 628 RLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS------ 701 (1023)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH------
Confidence 688888888887776521 0000 0001223578888889999999999999999999998875311
Q ss_pred hHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHH----HHhhCCCC
Q 000194 1007 YVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHL----KLVLDGKN 1081 (1880)
Q Consensus 1007 ~~~~il~~l~~~g~~~~~~~~~ilp~l~~~l~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l----~~~l~~~~ 1081 (1880)
..+-.++..-|.....+- ..+.+ ..+|+..++.+...+.. .+.......+++++ +.--....
T Consensus 702 --~~i~~~~~~~g~~~~~~~------~~r~~-----r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~ 768 (1023)
T 4hat_C 702 --SMISAQVAAEGLIATKTP------KVRGL-----RTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV 768 (1023)
T ss_dssp --HHHHHHHHHHCGGGGGSH------HHHHH-----HHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHhCCchhhccH------HHHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCC
Confidence 112223333343332211 11111 23556666655544432 23223333444444 33333334
Q ss_pred HHHH-HHHHHHHHHHHHHhccccccchhHHHHHHHh
Q 000194 1082 DELR-KDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1880)
Q Consensus 1082 ~~l~-~~al~~L~~l~~~~g~~f~~fip~i~~~l~~ 1116 (1880)
++.| ...+.++..++.++|..+.+.+|.|...+..
T Consensus 769 ~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~ 804 (1023)
T 4hat_C 769 PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFE 804 (1023)
T ss_dssp GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4555 5678899999999999888888888887655
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.30 E-value=1.2e-10 Score=148.38 Aligned_cols=357 Identities=11% Similarity=0.049 Sum_probs=239.4
Q ss_pred HHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHhhhChHHHHHHHH--HHHHHHHhhhcCC-ChhhhhhHHHHHhHhhcccc
Q 000194 26 LNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMD--QLYDRISGLLESN-DAAENLGALRAIDELIDVAL 101 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~-~~~aa~~l~~~v~~~~~~~~~~~~~~~~~--~l~~~i~~l~~s~-~~~~r~~~i~ai~~Li~~~~ 101 (1880)
+..+++.|++.+.+ +..|+..|+.++.. +..+. ....+. .+.+.+.++++++ +...|..++.++..+.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~---~~~~~-~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSK---EPNPP-IDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHS---SSSCC-HHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCCCc-HHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 77889999887644 44588888887621 11111 222222 3556666777776 78889999999998875421
Q ss_pred CcchhHH-HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000194 102 GENASKV-SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1880)
Q Consensus 102 ~~~~~~~-~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~ 179 (1880)
......+ ....+.|..++. ++|.+++..|+++|+.++.........+++ ..++.++..+.++.++..|..|+.+|+.
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1111111 124566777775 568999999999999998752111111222 2456666667655677889999999999
Q ss_pred HHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHHHhhccCCCChhHH
Q 000194 180 MAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVHSI 257 (1880)
Q Consensus 180 la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~~l~~~~~~l~~~~~~~~~ 257 (1880)
++.+. |..-...+..+++.+...+.++++.||..|+.+++.+..... ...... -..+++.+...+.++ +++++
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~~~~i~~L~~ll~~~-~~~v~ 251 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN----DKIQAVIDAGVCRRLVELLMHN-DYKVV 251 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH----HHHHHHHHTTTHHHHHHHTTCS-CHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc----HHHHHHHHcCcHHHHHHHHCCC-chhHH
Confidence 99876 654445568899999999999999999999999987653211 111111 124667777777765 47899
Q ss_pred HHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC
Q 000194 258 HGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP 335 (1880)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~ 335 (1880)
..++.+|+.+....++.....++ .+++.++..+++.++.+|+.++.+|+.++...+... +..+ ..+++.++..|.++
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI-QTVIDANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHhcC
Confidence 99999999988755433222222 367788888889999999999999999997555432 2233 36777888887654
Q ss_pred C--CcchHHHHHHHHHhhch-hhhhhhh-hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 336 A--ERDSGFIALGEMAGALD-GELFHYL-PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 336 ~--~r~~a~~alg~la~~v~-~~~~p~l-~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
. .|..|+.+|++++.... +.+...+ ..+++.+.+.+.+.+.+.+..++.+++.++...
T Consensus 331 ~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 3 47889999999987632 2222233 347778888886654444567888888888754
No 31
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.28 E-value=5.8e-09 Score=136.84 Aligned_cols=472 Identities=12% Similarity=0.101 Sum_probs=266.7
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH
Q 000194 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1880)
Q Consensus 157 ~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1880)
+++.+++.+-+ .|.-+.+.+..+++..|+.+ .-++..+.+.|.|+++.||..|..+++.+.. .+.
T Consensus 75 vik~~~s~~~~-~Krl~Yl~~~~~~~~~~e~~----~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~----------~~~ 139 (618)
T 1w63_A 75 CLKLIASQKFT-DKRIGYLGAMLLLDERQDVH----LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS----------SEM 139 (618)
T ss_dssp HHHHHHSSSHH-HHHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC----------HHH
T ss_pred HHHHHcCCchH-HHHHHHHHHHHHhCCCcHHH----HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC----------HHH
Confidence 33444444444 45555556777766554432 2456677789999999999999999886521 234
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 237 ~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
...+++.+...+.+++ ..+|.+|+.++..+....++.+. .+.+.+...+.++++.|+.+++.++..++...++.
T Consensus 140 ~~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~- 213 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM- 213 (618)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-
Confidence 5677888888888775 78899999999999887666543 33444555667899999999999999998776542
Q ss_pred HHHHHHHHHHHHHHhhcC----C-----------C--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCC
Q 000194 317 VTNYLKICMNHILTVLRI----P-----------A--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379 (1880)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~----~-----------~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~ 379 (1880)
.+ ++..++|.+...|.+ . . -+...+.+++.++..-++ .
T Consensus 214 ~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~----------------------- 268 (618)
T 1w63_A 214 LA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-S----------------------- 268 (618)
T ss_dssp HH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-H-----------------------
T ss_pred HH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-H-----------------------
Confidence 22 334555555554432 0 0 012333333333221100 0
Q ss_pred chHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCH--H-HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCC
Q 000194 380 LEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLST--T-LVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQAR 456 (1880)
Q Consensus 380 ~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~--~-l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~ 456 (1880)
.+.+.+++..++...- ..-+. . +.++...+.. +..
T Consensus 269 --------------~~~~~~~L~~l~~~~~-~~~~~~~aV~~ea~~~i~~-l~~-------------------------- 306 (618)
T 1w63_A 269 --------------SEAMNDILAQVATNTE-TSKNVGNAILYETVLTIMD-IKS-------------------------- 306 (618)
T ss_dssp --------------HHTTHHHHHHHHHTSC-CSSTHHHHHHHHHHHHHHH-SCC--------------------------
T ss_pred --------------HHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHh-cCC--------------------------
Confidence 0111222222211100 00000 0 0011111100 000
Q ss_pred CCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCC
Q 000194 457 PAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSG 536 (1880)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~ 536 (1880)
+......|.. .+..++.+.+++||..|..++..+....+
T Consensus 307 ---------------------~~~l~~~a~~------------------~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-- 345 (618)
T 1w63_A 307 ---------------------ESGLRVLAIN------------------ILGRFLLNNDKNIRYVALTSLLKTVQTDH-- 345 (618)
T ss_dssp ---------------------CHHHHHHHHH------------------HHHHHHTCSSTTTHHHHHHHHHHHHHHHH--
T ss_pred ---------------------CHHHHHHHHH------------------HHHHHHhCCCCchHHHHHHHHHHHHhhCH--
Confidence 0000011222 22234555677888888777777664322
Q ss_pred ccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC---CCCcchhhccHhhHHHHHHHhCCCCH
Q 000194 537 VSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG---NRGFDDFLAQADCLSAIFAALNDEDF 613 (1880)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~~~fd~~L~~~~~l~~L~~~l~D~~~ 613 (1880)
..+......++ .++.|+|..||..+++.+.. ...+ ..+++.+...+.+.+.
T Consensus 346 -------------------~~~~~~~~~i~-~~l~d~d~~Ir~~alelL~~l~~~~nv------~~iv~eL~~~l~~~d~ 399 (618)
T 1w63_A 346 -------------------NAVQRHRSTIV-DCLKDLDVSIKRRAMELSFALVNGNNI------RGMMKELLYFLDSCEP 399 (618)
T ss_dssp -------------------HHHGGGHHHHH-HGGGSSCHHHHHHHHHHHHHHCCSSST------HHHHHHHHHHHHHCCH
T ss_pred -------------------HHHHHHHHHHH-HHccCCChhHHHHHHHHHHHHcccccH------HHHHHHHHHHHHhCCH
Confidence 11222222222 24678888899888887631 1111 2356667777778889
Q ss_pred hHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhc
Q 000194 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1880)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1880)
++|..++..+|+++...+.....++. .++..+... + ...+.++...+..+++..++. -..++..+...+.
T Consensus 400 e~r~~~v~~I~~la~k~~~~~~~~v~----~ll~lL~~~-~-~~v~~~~~~~l~~ii~~~p~l----~~~~v~~L~~~l~ 469 (618)
T 1w63_A 400 EFKADCASGIFLAAEKYAPSKRWHID----TIMRVLTTA-G-SYVRDDAVPNLIQLITNSVEM----HAYTVQRLYKAIL 469 (618)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHH----HHHHHHHHT-G-GGSCSSHHHHHHHHHHHSCST----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHH----HHHHHHHhc-c-chhHHHHHHHHHHHHhcChhH----HHHHHHHHHHHHh
Confidence 99999999999999987644333333 333333333 2 234445667788888776543 2345666666666
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHhcCC----c---hhhhHHhHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhhcCccc
Q 000194 694 EGTGINANNGIISGVLVTVGDLARVGGF----G---MRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVI 765 (1880)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~----~---~~~~~~~l~p~l~~~l~d-~~~~~~r~~Al~~Lg~l~~~~~~~i 765 (1880)
+.. ....+...++.++|+.+..... . +...-..+++.+...+.. ..+..+|..++.+++++....+.
T Consensus 470 ~~~---~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-- 544 (618)
T 1w63_A 470 GDY---SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-- 544 (618)
T ss_dssp HCC---SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--
T ss_pred ccc---ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--
Confidence 532 1334555678899988764321 0 011122344555554432 34678999999999998765432
Q ss_pred ccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc
Q 000194 766 TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 766 ~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga 803 (1880)
. .+.+..++.....+.+.++|..|...+..+..
T Consensus 545 ----~-~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 545 ----T-VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp ----C-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ----h-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 1 23444455545556689999999988877654
No 32
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.27 E-value=5.2e-11 Score=136.26 Aligned_cols=196 Identities=10% Similarity=0.134 Sum_probs=163.6
Q ss_pred CCCcchhHHHHHHHHHH-HHhhcCccc--hhchHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHHh-hhchhhHHHHH
Q 000194 163 GDRVEYRRFAAVLILKE-MAENASTVF--NVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIE-KRETRWRVQWY 237 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~-la~~~p~~l--~~~l~~i~~~i~~~l-~D~~~~VR~aA~~al~~~~~~i~-~r~~~~~~~~~ 237 (1880)
++++|..|.+|+..|.. +++++|... ...+..+++.+...+ .|++..||.+|+.|++++.+.+. .+ +...++
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~---f~~~y~ 102 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG---FSKDYV 102 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT---SCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc---ccHHHH
Confidence 46888999999999999 999999877 566778999999999 79999999999999999886553 21 222678
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhh-HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM-MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~-~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~--- 313 (1880)
..+++.++..+++.. ..++.++..++..+.+..++.. .++++.+++.++..++++++.+|..++.+|.+++...+
T Consensus 103 ~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence 889999999999875 5677888888998888654322 12478899999999999999999999999999997766
Q ss_pred hhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhhHH
Q 000194 314 DRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTI 363 (1880)
Q Consensus 314 ~~f~~~yl-~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~-~~p~l~~i 363 (1880)
..|.. |+ +.++|.+...+...+ .|..|+.|+|.++..+|++ +.||++.+
T Consensus 182 ~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 182 STLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred hhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45654 89 999999999997654 6999999999999999985 88888764
No 33
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.27 E-value=4.7e-07 Score=123.92 Aligned_cols=373 Identities=12% Similarity=0.116 Sum_probs=219.3
Q ss_pred CCChhHHHHHHHhcc---CC-CCcchh-----hccHhhHHHHHHHhC-----CCCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 572 DADVTVRHSIFSSLY---GN-RGFDDF-----LAQADCLSAIFAALN-----DEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 572 d~~~~vR~~~l~~l~---~~-~~fd~~-----L~~~~~l~~L~~~l~-----D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
+++|..+.+++.+|. +. ..-..+ -..|.+++.+...++ ++++.||..+++++||.++..... ..+
T Consensus 454 ~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~ 532 (980)
T 3ibv_A 454 ENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAA 532 (980)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTT
T ss_pred CCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chh
Confidence 356788888777643 21 110000 012346666666654 889999999999999988754221 022
Q ss_pred HHHHHHHHHH--HHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCC--------------
Q 000194 638 LRRHLIQLLT--YLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINAN-------------- 701 (1880)
Q Consensus 638 l~~~l~~~l~--~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~-------------- 701 (1880)
+..+|.-++. .+.+ ++.++|..|+.+|..+++.++..+.||++.|+..+.+.+.-...+...
T Consensus 533 l~~~L~~ll~~~gl~~--~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~ 610 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHN--TNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRN 610 (980)
T ss_dssp HHHHHHHHTSTTTTTC--CCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHT
T ss_pred HHHHHHHHhccccccC--CChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhccc
Confidence 3333333444 3333 357889999999999999999999999999999888776632111000
Q ss_pred --hhHHHHHHHHHHHHHHhcCC---chhhhHHhHHHHHHHHHh----cCCch-hhH---HHHHHHHHHHHhhcCcc---c
Q 000194 702 --NGIISGVLVTVGDLARVGGF---GMRQYISELMPLIVEALL----DGAAV-TKR---EVAVSTLGQVVQSTGYV---I 765 (1880)
Q Consensus 702 --~~v~~~~~~~l~~La~~~g~---~~~~~~~~l~p~l~~~l~----d~~~~-~~r---~~Al~~Lg~l~~~~~~~---i 765 (1880)
.+-...+++++|.++...+. .-..|+..+++.+++.+. ...+. +.+ ...+.++|.+++..... .
T Consensus 611 ~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~ 690 (980)
T 3ibv_A 611 SDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEE 690 (980)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CC
T ss_pred CCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 11245678999999987653 566788888888777654 11111 111 13467788888765332 1
Q ss_pred ccC-CcchHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcc-cCccchhhccccCCCcccccccCCCCCCCCCCCcccccc
Q 000194 766 TPY-NEYPQLLGLLLKMLNG-ELVWSTRREVLKVLGIMGA-LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMD 842 (1880)
Q Consensus 766 ~p~-~~~p~ll~~Ll~~L~~-~~~~~vr~~~l~~lg~lga-ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1880)
.|. ..+-+.++.++..+.. ..+..+|.++.+++..+-. +.+ +
T Consensus 691 ~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~-----------------------------------~ 735 (980)
T 3ibv_A 691 VAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP-----------------------------------D 735 (980)
T ss_dssp CSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH-----------------------------------H
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH-----------------------------------h
Confidence 111 0122555566555642 3468899999888876421 100 0
Q ss_pred cCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHH----hcC---Cc--
Q 000194 843 LWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTV----RTC---DD-- 913 (1880)
Q Consensus 843 l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l----~~~---~~-- 913 (1880)
+. | +.+.++..|+..++-. .+...+..+..++...|..+.|.+..+++.++..+ ... ++
T Consensus 736 ~~---p-----~lp~~i~~ll~~~~~~----e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~ 803 (980)
T 3ibv_A 736 ML---P-----KVPQLISILLNSIDMN----ELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDA 803 (980)
T ss_dssp HT---T-----THHHHHHHHHHHCCTT----THHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHH
T ss_pred HH---H-----HHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 00 0 2344555555433322 24466777888888888888888888888877643 221 12
Q ss_pred ----chhHHHHHHHHHHHHHH------HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh-----
Q 000194 914 ----YLKDYITWKLGTLVSIV------RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN----- 978 (1880)
Q Consensus 914 ----~~~~~~~~~l~~lv~~~------~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~----- 978 (1880)
.++..++..+..++..- .+.-+++++.++..+..+-.....+. .+-.++.++..++...|
T Consensus 804 r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~-----~~K~a~~~l~~~v~~~~~~~~~ 878 (980)
T 3ibv_A 804 VKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPA-----TQKSSIALVSKMVSLWGGKDGI 878 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CH-----HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChH-----HHHHHHHHHHHHHHHHCCCCcc
Confidence 14444555555544411 12225678888877776644322121 12267778888776654
Q ss_pred hhhhccchhhHHHHHHhcccc
Q 000194 979 DEFRTHLPVILPCCIQVLSDA 999 (1880)
Q Consensus 979 ~~f~~yl~~l~p~ll~~l~~~ 999 (1880)
..|..|+-.++|.+.....++
T Consensus 879 ~gf~~f~~~~~~~~f~~p~~~ 899 (980)
T 3ibv_A 879 AGFENFTLSLTPLCFEMPVNP 899 (980)
T ss_dssp CCHHHHHHHHHHHHHHGGGC-
T ss_pred hHHHHHHHHHHHHHHHhhcCC
Confidence 248887666899888887543
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.26 E-value=7.2e-11 Score=153.41 Aligned_cols=356 Identities=12% Similarity=0.103 Sum_probs=235.1
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH-HHHHHHHHHHHhcCC-ChhHHHHHHHhc
Q 000194 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADA-DVTVRHSIFSSL 585 (1880)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~-~~~vR~~~l~~l 585 (1880)
...+.++++.+|..|+.++.+++...... ....++ ..+++.|+.. +.++ ++.+|..++.+|
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~----------------~~~~~~~~g~i~~Lv~~-L~~~~~~~v~~~A~~~L 155 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRP----------------PIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWAL 155 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSC----------------SHHHHHHTTCHHHHHHT-TSTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCc----------------cHHHHHHCCCHHHHHHH-hCCCCCHHHHHHHHHHH
Confidence 34567778999999999998887432100 011111 2355666654 4565 899999988887
Q ss_pred cCCCC----cchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHH
Q 000194 586 YGNRG----FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1880)
Q Consensus 586 ~~~~~----fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1880)
..-.. ....+.....++.|..++.+++.+||..|+.+|+.++...|..-...+..-.+..+..+..+ .+...+..
T Consensus 156 ~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~ 234 (530)
T 1wa5_B 156 TNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRT 234 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHH
Confidence 52111 11122234568889999999999999999999999998764321111111112223333334 57788999
Q ss_pred HHHHHHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH-hHHHHHHHHHh
Q 000194 662 SAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALL 739 (1880)
Q Consensus 662 a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~l~p~l~~~l~ 739 (1880)
|+++|+.++... +..-......+++.|+..+.++ ++.++..++.+|+.++....+.....+. .++|.++..+.
T Consensus 235 a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-----d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-----DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 999999999765 3333344556778888888764 6889999999999998644333333333 67899999998
Q ss_pred cCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 740 d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+. +..+|..|+.+|+.++...+........ ..+++.|+.+|+++ ++.+|.+++.+|+.++.-.+...+
T Consensus 310 ~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~--------- 377 (530)
T 1wa5_B 310 HE-STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQ--------- 377 (530)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred CC-ChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence 65 5789999999999998654322111111 35788899999765 789999999999998642221100
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCC--CCCCCc
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL--GCVPYL 897 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~--~~~~~l 897 (1880)
.+...-+++.|+.+|++++. ..+..++.++..+....+. ....++
T Consensus 378 --------------------------------~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~l 424 (530)
T 1wa5_B 378 --------------------------------AVIDANLIPPLVKLLEVAEY-KTKKEACWAISNASSGGLQRPDIIRYL 424 (530)
T ss_dssp --------------------------------HHHHTTCHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred --------------------------------HHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 00011245667777776653 4566788888888876443 222233
Q ss_pred --chhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000194 898 --PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1880)
Q Consensus 898 --~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1880)
..++|.++..+...++.++..++..|..++....
T Consensus 425 ~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 3489999999988888889999888888887554
No 35
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.26 E-value=1.9e-07 Score=127.81 Aligned_cols=775 Identities=11% Similarity=0.112 Sum_probs=402.1
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCc
Q 000194 108 VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-AST 186 (1880)
Q Consensus 108 ~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~-~p~ 186 (1880)
+..+...+..+..+ +.+.++.|-+.|..+-..++... .+...|....+...|+.|+..|+..... +..
T Consensus 15 v~~Le~av~~ly~p--~~~~r~~A~~~L~~~q~sp~aw~---------~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~ 83 (1023)
T 4hat_C 15 IALLDQVVSTFYQG--SGVQQKQAQEILTKFQDNPDAWQ---------KADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1023)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHCTTGGG---------GHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCccHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 44556666666643 34578888888888877644321 1223333344567888888888876653 322
Q ss_pred cchhchHHHHHHHHHHh----cCC-----chhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000194 187 VFNVHVAEFVDAIWVAL----RDP-----TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1880)
Q Consensus 187 ~l~~~l~~i~~~i~~~l----~D~-----~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 257 (1880)
.=......+-..++..+ .+| .+.||..-+.++..++. ++-. ..| +.+++.+...++++ ....
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~----~~~p--~~W-p~~l~dL~~~l~~~--~~~~ 154 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILK----QEWP--QNW-PEFIPELIGSSSSS--VNVC 154 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHH----HHTT--TTC-TTHHHHHHHHTTTC--HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH----HhCh--hhc-hHHHHHHHHHhcCC--HHHH
Confidence 21222233333333333 343 24555556666555443 2210 123 34666666666543 3456
Q ss_pred HHHHHHHHHHHHcc-----h-----------hhhHHHHHHHHHHHHHHhh-cchhHHHHHHHHHhHhHhhhChhhHHHHH
Q 000194 258 HGSLLAVGELLRNT-----G-----------EFMMSRYREVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNY 320 (1880)
Q Consensus 258 ~~al~~l~~ll~~~-----~-----------~~~~~~~~~i~~~ll~~~~-~~~~~Vr~~~~~~i~~la~~~~~~f~~~y 320 (1880)
...+.+|..|.+-. . +.|...++.++..+...++ ..++.+..+++.++.....|.+-..+-
T Consensus 155 ~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~-- 232 (1023)
T 4hat_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIY-- 232 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHH--
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhc--
Confidence 66677776665521 1 2345566666666666654 356778888999999988887754321
Q ss_pred HHHHHHHHH-HhhcCCCCcchHHHHHHHHHh-hc-hh--hhh----hhhhHHHHHH-HHhh----------cCCCCCCCc
Q 000194 321 LKICMNHIL-TVLRIPAERDSGFIALGEMAG-AL-DG--ELF----HYLPTITSHL-REAI----------APRRGKPSL 380 (1880)
Q Consensus 321 l~~~~~~Ll-~~L~~~~~r~~a~~alg~la~-~v-~~--~~~----p~l~~i~~~l-~~~l----------~~~~~~~~~ 380 (1880)
-..+++.++ ..|..++.|..|.+||..++. .. +. .+. ..++.+++.+ ...+ .... ....
T Consensus 233 ~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~-~~D~ 311 (1023)
T 4hat_C 233 ETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANAN-GNDQ 311 (1023)
T ss_dssp SSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTC-TTHH
T ss_pred chhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccc-cchH
Confidence 146777777 777777789999999999876 22 22 122 2233444444 2211 1111 1112
Q ss_pred hHHHHHHHHHHHhCC----------CchHHHHHHHHHHHhc-CCC-HH----HHHHHHHHHHhCC---CCh---HHHHHH
Q 000194 381 EALACVGNIARAMGP----------VMEPHVRGLLDIMFSA-GLS-TT----LVDALEQITVSIP---SLL---PTIQDR 438 (1880)
Q Consensus 381 ~a~~~l~~la~~~g~----------~~~~~l~~ll~~l~~~-~ls-~~----l~~~l~~i~~~~p---~l~---~~i~~~ 438 (1880)
..+..++.+...+|+ .+.+.+..++..|+.+ +.. .+ ..+.+..+.+.+- ... ..+..+
T Consensus 312 e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~ 391 (1023)
T 4hat_C 312 SFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ 391 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 334444444333332 2234444445566664 332 22 2244555554321 111 122223
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccc-ccc-CCchhHH---HHHHhhccc-ccCCCcchhhHHHHHhhhcc
Q 000194 439 LLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQV-SDL-NGSAPVQ---LALQTLARF-NFKGHDLLEFARDSVVLYLD 512 (1880)
Q Consensus 439 ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~---~Al~~L~~~-~~~~~~l~~~v~~~~~~~l~ 512 (1880)
|...+ +.+-.++. ..... .+...++ ++. .|.+... ..=++|... ...+....+.+.+.+...+.
T Consensus 392 L~~vl---i~km~~P~----e~~iv---e~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~ 461 (1023)
T 4hat_C 392 LRLVI---IENMVRPE----EVLVV---ENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID 461 (1023)
T ss_dssp HHHHH---HHSCCCCT----TCCEE---ECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHS
T ss_pred HHHHH---HHhcCCCc----ccccC---CCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 33322 33322221 00000 0000001 000 0111000 000222211 01111122222222222333
Q ss_pred C--CChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhc----CCChhHHHHHHHhcc
Q 000194 513 D--EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA----DADVTVRHSIFSSLY 586 (1880)
Q Consensus 513 ~--~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~----d~~~~vR~~~l~~l~ 586 (1880)
+ .++..|.||.-+.+.+...... ......+..+++.|+...-. |+.+.||.+++-.++
T Consensus 462 ~~~~~W~~~EA~~~a~gaIa~~~~~----------------~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG 525 (1023)
T 4hat_C 462 GSEWSWHNINTLSWAIGSISGTMSE----------------DTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG 525 (1023)
T ss_dssp STTCCHHHHHHHHHHHHHTTTSSCH----------------HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCc----------------hhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH
Confidence 3 5789999988888776531110 01345677777777664321 456677777777775
Q ss_pred CCCCcchhhc-c----HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc--------cHHHHHHHHHHHHHHhcCC
Q 000194 587 GNRGFDDFLA-Q----ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV--------LPALRRHLIQLLTYLEQSS 653 (1880)
Q Consensus 587 ~~~~fd~~L~-~----~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v--------~p~l~~~l~~~l~~l~~~~ 653 (1880)
++-+++. + +.++..|+..++|+++.|+..|..++..+++.+...+ .|++..++..+..... .
T Consensus 526 ---ry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~-~- 600 (1023)
T 4hat_C 526 ---QYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA-D- 600 (1023)
T ss_dssp ---TCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-T-
T ss_pred ---HHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH-h-
Confidence 4444443 2 3467778888899999999999999999998765433 4677765544444333 3
Q ss_pred CChHhHHHHHHHHHHHHHhCccc--ccCchHHHHHHHHHHhccCC-----CCC--CC---hhHHHHHHHHHHHHHHhcCC
Q 000194 654 ADNKCREESAKLLGCLIRNCERL--IRPYIAPIHKALVARLLEGT-----GIN--AN---NGIISGVLVTVGDLARVGGF 721 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~--~~py~~~il~~ll~~l~~~~-----~~~--~~---~~v~~~~~~~l~~La~~~g~ 721 (1880)
-+.+.+....++++.++++.+.. ...|+..+++.+...+..-. .+. .+ ......++.|++.++...|.
T Consensus 601 l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~ 680 (1023)
T 4hat_C 601 LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGA 680 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcH
Confidence 45677788999999999987633 34467666666665543210 000 01 22345678888889999999
Q ss_pred chhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 722 ~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
.+.|++..++|.+++..+-- -..+...+...|..+. +.| .+.. + ..+|+++++.+...
T Consensus 681 ~f~~~~~~i~~~~l~~y~~~---------s~~i~~~~~~~g~~~~---~~~-~~r~----~-----r~ik~~il~l~~~~ 738 (1023)
T 4hat_C 681 DFYPQLGHIYYNMLQLYRAV---------SSMISAQVAAEGLIAT---KTP-KVRG----L-----RTIKKEILKLVETY 738 (1023)
T ss_dssp GGHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHCGGGG---GSH-HHHH----H-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhCCchhh---ccH-HHHH----H-----HHHHHHHHHHHHHH
Confidence 99999999999988776521 1122333333343321 112 2221 2 25778888877653
Q ss_pred cccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHH
Q 000194 802 GALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGS 881 (1880)
Q Consensus 802 galdp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~a 881 (1880)
-. + . + +...+. .. +...++..++.--.+......++.+...
T Consensus 739 i~------~-~---~------------------~~~~~~----------~~-~~~~l~~~vl~dY~~~~~~~r~~~vL~l 779 (1023)
T 4hat_C 739 IS------K-A---R------------------NLDDVV----------KV-LVEPLLNAVLEDYMNNVPDARDAEVLNC 779 (1023)
T ss_dssp HH------H-C---S------------------CHHHHH----------HH-THHHHHHHHHHHHHHSCGGGCCHHHHHH
T ss_pred Hh------c-C---C------------------CHHHHH----------HH-hHHHHHHHHHHHHHhCChhhccHHHHHH
Confidence 10 0 0 0 000000 00 1122222322222222222344678888
Q ss_pred HHHHHHHhCCCCCCCcchhhHHHH----HHHhc---CCcchhHHHHHHHHHHHHHHHHhHHH----hHHHHHHHHHHhhc
Q 000194 882 LMFIFKSMGLGCVPYLPKVLPDLF----HTVRT---CDDYLKDYITWKLGTLVSIVRQHIRK----YLQELFSLISELWS 950 (1880)
Q Consensus 882 l~~i~~~~~~~~~~~l~~iip~ll----~~l~~---~~~~~~~~~~~~l~~lv~~~~~~i~~----y~~~i~~~i~~~~~ 950 (1880)
...|+..+|..+.|.++.|+..+. ..+++ ..|+.|..+|..+..++...-..+-. .+..+++.+.-...
T Consensus 780 ~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~ 859 (1023)
T 4hat_C 780 MTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFK 859 (1023)
T ss_dssp HHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcC
Confidence 888999999877777777777654 34543 34678999998888877654333322 33444444443333
Q ss_pred CCCCCcccccccchhHHHHHHHHHHH-----hhhhhhccchhhHHHHHHhcccc
Q 000194 951 SFSLPATNRTYRGLPVLHLVQQLCLA-----LNDEFRTHLPVILPCCIQVLSDA 999 (1880)
Q Consensus 951 ~~~~~~~~~~~~~~~~l~~i~~l~~~-----l~~~f~~yl~~l~p~ll~~l~~~ 999 (1880)
-.. .+....++. .+..++..+... ...-++.|.-.++..++.++.|.
T Consensus 860 h~~-r~~~~~~l~-~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~ 911 (1023)
T 4hat_C 860 HNN-RDVEVNGLQ-IALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDS 911 (1023)
T ss_dssp CCC-HHHHHHHHH-HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCc-hHHHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 211 111100111 233344444332 11224467777888888888664
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.25 E-value=2.4e-10 Score=148.43 Aligned_cols=360 Identities=12% Similarity=0.055 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCCC-hhhhhhHHHHHhHhhcc
Q 000194 23 LDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESND-AAENLGALRAIDELIDV 99 (1880)
Q Consensus 23 ~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~~-~~~r~~~i~ai~~Li~~ 99 (1880)
...+..+++.|.+.+.+.+ .|+..|+.++.. +- .+...... ..+.+.+.+++++++ ...|..|+.++..+...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~---~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSI---ER-SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTC---SS-SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---CC-CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 3448889999988764444 477777777521 11 01111111 234566677787766 88899999999999764
Q ss_pred ccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHH
Q 000194 100 ALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLI 176 (1880)
Q Consensus 100 ~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~ 176 (1880)
.. +....+. ...+.|..++. +.+.+++..|+++|+.|+..+......+++ ..++.++..|..+.+...|..|+.+
T Consensus 149 ~~-~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~ 226 (528)
T 4b8j_A 149 TS-ENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWT 226 (528)
T ss_dssp CH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHH
T ss_pred CH-HHHHHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHH
Confidence 21 1111111 24566777775 568999999999999998642111111221 2466777777656677888999999
Q ss_pred HHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHHHhhccCCCChh
Q 000194 177 LKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVH 255 (1880)
Q Consensus 177 l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~~l~~~~~~l~~~~~~~ 255 (1880)
|..|+.+.|..-...+..+++.+...|.++++.||..|+.+|+.+... ........ -..+++.+...|.+++ ..
T Consensus 227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~g~v~~Lv~lL~~~~-~~ 301 (528)
T 4b8j_A 227 LSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG----TNDKIQAVIEAGVCPRLVELLLHPS-PS 301 (528)
T ss_dssp HHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----CHHHHHHHHHTTCHHHHHHHTTCSC-HH
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCHHHHHHHHHcCCC-hh
Confidence 999999877655566788999999999999999999999999876532 11111111 1246677777777764 68
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcc-hhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000194 256 SIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHR-DRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1880)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~-~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1880)
++..|+.+|+.+.....+.....+ ..+++.++..+.+. ++.||+.++.+|+.++...+.....-+-..+++.|+..|.
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 899999999998875443332222 23567777788888 9999999999999999765543222122367788888886
Q ss_pred CCC--CcchHHHHHHHHHhhchhhhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 334 IPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 334 ~~~--~r~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
... .|..|+.+|++++.........++ ..+++.+...+...+.+....++.+++.|+...
T Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 543 478899999999877444444554 356777888886654444456788888887654
No 37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=7.1e-11 Score=135.87 Aligned_cols=195 Identities=16% Similarity=0.167 Sum_probs=147.4
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHH
Q 000194 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ 153 (1880)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~ 153 (1880)
+.+.+++++|.+|.+|+.++..++....+-......++.+.|...+..+.+..|+..|+.+++.|
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~l--------------- 84 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALL--------------- 84 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH---------------
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH---------------
Confidence 45677899999999999999999876312111223455555555552133455555555555544
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhH
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR 233 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~ 233 (1880)
+...+..|.+|+..++|.|+..++|+++.||++|..|+..++....
T Consensus 85 ---------------------------a~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------- 130 (242)
T 2qk2_A 85 ---------------------------AKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------- 130 (242)
T ss_dssp ---------------------------HHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------
T ss_pred ---------------------------HHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------
Confidence 4444467889999999999999999999999999999998865321
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000194 234 VQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1880)
Q Consensus 234 ~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~ 311 (1880)
+..+++.+..++.+. ++.++..++.+++.++...+ .+..+++..+++.++..++++++.||.++..+++.++..
T Consensus 131 ---~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 131 ---LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp ---HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 456778888888876 48999999999999887543 367889999999999999999999999999999999876
Q ss_pred ChhhHHHHHH
Q 000194 312 LRDRFVTNYL 321 (1880)
Q Consensus 312 ~~~~f~~~yl 321 (1880)
.+.+..+.|+
T Consensus 207 vg~~~~~~~l 216 (242)
T 2qk2_A 207 MGDKAVTPLL 216 (242)
T ss_dssp HCHHHHGGGG
T ss_pred cCHHHHHHHH
Confidence 6654333343
No 38
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.23 E-value=8.5e-11 Score=152.77 Aligned_cols=357 Identities=15% Similarity=0.126 Sum_probs=236.4
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH-HHHHHHHHHHHHhcCCC-hhHHHHHHHhc
Q 000194 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL-IEELVEKLLIAAVADAD-VTVRHSIFSSL 585 (1880)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~~Ll~~~~~d~~-~~vR~~~l~~l 585 (1880)
+..+.++++.+|..|+.++++++...... ....+ -..+++.|+... .+++ +.+|..++.+|
T Consensus 80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~----------------~~~~~~~~g~v~~Lv~lL-~~~~~~~v~~~A~~~L 142 (528)
T 4b8j_A 80 IGGVYSDDNNLQLEATTQFRKLLSIERSP----------------PIEEVIQSGVVPRFVQFL-TREDFPQLQFEAAWAL 142 (528)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTCSSSC----------------CHHHHHHTTCHHHHHHHH-TCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCCc----------------hHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHH
Confidence 45567778999999999998887532200 01111 124556666653 4554 99999888877
Q ss_pred cC---C-CCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHH
Q 000194 586 YG---N-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCRE 660 (1880)
Q Consensus 586 ~~---~-~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~ 660 (1880)
.. . ......+.....++.|...+.+++.+||..|+.+|+.++...|..-...+. ..+..++..+..+ .+...+.
T Consensus 143 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~ 221 (528)
T 4b8j_A 143 TNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLR 221 (528)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHH
T ss_pred HHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHH
Confidence 41 0 111111222347889999999999999999999999999766532111111 1223334444344 6788899
Q ss_pred HHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHHHh
Q 000194 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALL 739 (1880)
Q Consensus 661 ~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~l~ 739 (1880)
.++++|+.++...+..-......+++.|++.+.+. ++.++..++.+++.++..........+ ..++|.++..|.
T Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 99999999997754433344567788888888764 788999999999988754332222222 257899999998
Q ss_pred cCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 740 d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+. +..++..|+.+|+.++............ ..+++.|+.+|+++.++.+|.+++.+|+.+.+-++....
T Consensus 297 ~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~--------- 365 (528)
T 4b8j_A 297 HP-SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ--------- 365 (528)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH---------
T ss_pred CC-ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH---------
Confidence 76 5789999999999998754332111111 357888888887654789999999999988642221100
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCc--
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL-- 897 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l-- 897 (1880)
..+..-+++.|+.+|.+++. ..+..++.++..+....++....++
T Consensus 366 --------------------------------~~~~~~~i~~L~~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 366 --------------------------------AVINAGIIGPLVNLLQTAEF-DIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp --------------------------------HHHHTTCHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred --------------------------------HHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00011235677777776643 4556788888888876333334444
Q ss_pred chhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000194 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1880)
Q Consensus 898 ~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1880)
..+++.++..+...++.++..++..|+.++....
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4688999999988888888888888888876543
No 39
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.21 E-value=8e-08 Score=125.40 Aligned_cols=486 Identities=14% Similarity=0.101 Sum_probs=291.1
Q ss_pred HHHHHHHHHHcCCCC---chhhHHHHHHHHHHHHHh-h--hChHHHHHHHHHH-------------HHHHHhhhcCCChh
Q 000194 24 DALNRILADLCTHGN---PKEGASLALRKHIEEQAR-D--LGGEAFSRFMDQL-------------YDRISGLLESNDAA 84 (1880)
Q Consensus 24 ~~~~~l~~~l~s~~~---~~~~aa~~l~~~v~~~~~-~--~~~~~~~~~~~~l-------------~~~i~~l~~s~~~~ 84 (1880)
.-+..++++++.... +++.-..|+.++=.. .+ + .++..-.+.+-.+ .-.+.+++.+++..
T Consensus 11 ~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~-~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~ 89 (621)
T 2vgl_A 11 RGLAVFISDIRNCKSKEAEIKRINKELANIRSK-FKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYT 89 (621)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH-HHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHH
Confidence 458899999975432 333355565554332 23 2 2332222222222 13345678899999
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-C
Q 000194 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-G 163 (1880)
Q Consensus 85 ~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~ 163 (1880)
.|+.|-+++..+.... +..+.-..|.+.+=+. ++++-++..|..+++.+.. +++++..++.+...+. .
T Consensus 90 ~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~-~~n~~ir~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~ 158 (621)
T 2vgl_A 90 EKQIGYLFISVLVNSN----SELIRLINNAIKNDLA-SRNPTFMGLALHCIANVGS------REMAEAFAGEIPKILVAG 158 (621)
T ss_dssp HHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCS
T ss_pred HHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhhccCC------HHHHHHHHHHHHHHHhCC
Confidence 9999999999987553 2234444666766665 5688999999999998843 5677777777777763 4
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh-----------
Q 000194 164 DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW----------- 232 (1880)
Q Consensus 164 ~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~----------- 232 (1880)
+.++..|..|+.++..+....|+.+.+ +.+++.+...|.|+++.|+.+|..++..+...-.+.....
T Consensus 159 d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~l 236 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRI 236 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 667778888889999999988887653 4667777888999999999999998877643210000000
Q ss_pred ----------------HHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--------------h----------
Q 000194 233 ----------------RVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--------------G---------- 272 (1880)
Q Consensus 233 ----------------~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--------------~---------- 272 (1880)
...|.+..+=.++..+...++.+.+..-...+..++... +
T Consensus 237 l~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~ 316 (621)
T 2vgl_A 237 VTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISL 316 (621)
T ss_dssp HHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHH
Confidence 023443333233333332212222221111222222100 0
Q ss_pred ----hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh-hHHHHHHHHHHHHHHHhhc-CCC--CcchHHHH
Q 000194 273 ----EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD-RFVTNYLKICMNHILTVLR-IPA--ERDSGFIA 344 (1880)
Q Consensus 273 ----~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~-~f~~~yl~~~~~~Ll~~L~-~~~--~r~~a~~a 344 (1880)
.-..+.....+..+..++.++++.+|..++..+..++...+. .+ +......++.+|+ +++ .|..|++.
T Consensus 317 i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~----~~~~~~~i~~~L~~d~d~~Ir~~aL~l 392 (621)
T 2vgl_A 317 IIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA----VKTHIETVINALKTERDVSVRQRAVDL 392 (621)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHH----HHTTHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHH----HHHHHHHHHHHhccCCCHhHHHHHHHH
Confidence 001123344555666667788899999999999998876542 22 3334555666676 332 24556666
Q ss_pred HHHHHhhchhhhhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCHHHHHHHH
Q 000194 345 LGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG--LSTTLVDALE 422 (1880)
Q Consensus 345 lg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~--ls~~l~~~l~ 422 (1880)
+..++ .+ .-++.|+..+.+.+...+...+..++.+++.++..+.+++.-|++.+++.+-..| ...+....+.
T Consensus 393 L~~l~---~~---~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~ 466 (621)
T 2vgl_A 393 LYAMC---DR---SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVI 466 (621)
T ss_dssp HHHHC---CH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHH
T ss_pred HHHHc---Ch---hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 55554 22 2356677777776654332224578899999999999899999998888776543 5666677777
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccccc----CCCc
Q 000194 423 QITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNF----KGHD 498 (1880)
Q Consensus 423 ~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~----~~~~ 498 (1880)
.+....|.++......+++.+. . + +. ....+..|+..+|+|.. .++.
T Consensus 467 ~ii~~~~~~~~~~~~~l~~~l~----~-~-----------------------~~-~~~li~~~~wilGEy~~~~~~~~~~ 517 (621)
T 2vgl_A 467 QIVINRDDVQGYAAKTVFEALQ----A-P-----------------------AC-HENLVKVGGYILGEFGNLIAGDPRS 517 (621)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHT----S-S-----------------------SC-CHHHHHHHHHHHHHHTHHHHSSTTS
T ss_pred HHHhCChhHHHHHHHHHHHHHc----C-c-----------------------cc-hHHHHHHHHHHhcchHHHhcccCCC
Confidence 8888889888887777766553 0 0 00 11134567799999821 1111
Q ss_pred -chhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhc--CCCh
Q 000194 499 -LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA--DADV 575 (1880)
Q Consensus 499 -l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~--d~~~ 575 (1880)
-.++++. +.+.+...++.||..+..++.+++...++ . .+.+..+++.+.. |+|+
T Consensus 518 ~p~~~l~~-l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~------------------~----~~~i~~~l~~~~~~~~~d~ 574 (621)
T 2vgl_A 518 SPLIQFNL-LHSKFHLCSVPTRALLLSTYIKFVNLFPE------------------V----KATIQDVLRSDSQLKNADV 574 (621)
T ss_dssp CHHHHHHH-HHHHHTTSCHHHHHHHHHHHHHHHHHCGG------------------G----HHHHHHHHSSHHHHSCSSH
T ss_pred CHHHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHChH------------------H----HHHHHHHHHHHhcCCCCCH
Confidence 1123332 33334456789998888888888754321 1 1223344444455 7777
Q ss_pred hHHHHHHHhc
Q 000194 576 TVRHSIFSSL 585 (1880)
Q Consensus 576 ~vR~~~l~~l 585 (1880)
+||..+...+
T Consensus 575 evrdRA~~y~ 584 (621)
T 2vgl_A 575 ELQQRAVEYL 584 (621)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776665543
No 40
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.21 E-value=5.3e-10 Score=145.21 Aligned_cols=357 Identities=11% Similarity=0.063 Sum_probs=235.9
Q ss_pred HHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCC-ChhhhhhHHHHHhHhhccc
Q 000194 24 DALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESN-DAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 24 ~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~-~~~~r~~~i~ai~~Li~~~ 100 (1880)
..+..+++.|++.+.+.+ .|+..|+.++.. + ......... ..+.+.+.++++++ ++..|..|+.++..+....
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~---~-~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSR---E-HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCC---S-SSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---C-CCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 347889999988754433 477777776521 1 111111111 23456677888876 7888999999999987642
Q ss_pred cCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHH
Q 000194 101 LGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLIL 177 (1880)
Q Consensus 101 ~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l 177 (1880)
. +....+ ....+.|..++. +.+.+++..|+++|+.|+..+......++. ..++.++..+.+ .+...|..|+.+|
T Consensus 163 ~-~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L 239 (530)
T 1wa5_B 163 S-AQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTL 239 (530)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHH
T ss_pred H-HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 1 111111 122455556664 468999999999999998742111111111 245666666665 5556788899999
Q ss_pred HHHHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHHHHHhhccCCCChh
Q 000194 178 KEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVH 255 (1880)
Q Consensus 178 ~~la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~ 255 (1880)
..|+.+. |..-......+++.+...|.++++.||..|+.+|+.+... ......... ..+++.+...+.++ ++.
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~----~~~~~~~~~~~~~v~~Lv~lL~~~-~~~ 314 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG----PQEAIQAVIDVRIPKRLVELLSHE-STL 314 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS----CHHHHHHHHHTTCHHHHHHGGGCS-CHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC----CHHHHHHHHhcCcHHHHHHHHCCC-Chh
Confidence 9999876 6554566778999999999999999999999999887532 111111222 25667777777766 478
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhc
Q 000194 256 SIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLR 333 (1880)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~ 333 (1880)
++..|+.+|+.+....++.....++ .+++.++..+.+.++.||+.++.+|+.++...++.. ..++ ..+++.|+..|.
T Consensus 315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~-~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI-QAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHh
Confidence 8999999999988654433322222 467788888889999999999999999998666433 2233 357777777776
Q ss_pred CCC--CcchHHHHHHHHHhhchh--hhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHh
Q 000194 334 IPA--ERDSGFIALGEMAGALDG--ELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1880)
Q Consensus 334 ~~~--~r~~a~~alg~la~~v~~--~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~ 393 (1880)
.+. .|..|+.+|++++...+. +...++ ..+++.+...+.+.+.+.+..++.++..++...
T Consensus 394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 443 478999999999876443 333333 236677777775544333456777887777653
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.15 E-value=6.5e-09 Score=140.14 Aligned_cols=490 Identities=14% Similarity=0.087 Sum_probs=278.1
Q ss_pred hhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHH--HHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL--IEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
..++.++++.||..|+.+++.+...... ...+ ...+++.|+.....+.++++|..++.+|
T Consensus 156 v~lL~~~d~~vr~~A~~~L~~L~~~~~~------------------~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL 217 (780)
T 2z6g_A 156 TKLLNDEDQVVVNKAAVMVHQLSKKEAS------------------RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217 (780)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTSHHH------------------HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhCCChh------------------HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3556678899999999988887642110 0111 1245666666655667899999888877
Q ss_pred cC---CCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHH
Q 000194 586 YG---NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREES 662 (1880)
Q Consensus 586 ~~---~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a 662 (1880)
.. .......+.....++.|+..+.+++..+|..|+.+|+.++...+..-......-.+..+..+..+ ++.+.++.+
T Consensus 218 ~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a 296 (780)
T 2z6g_A 218 HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAIT 296 (780)
T ss_dssp HHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHH
T ss_pred HHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHHHH
Confidence 41 00000112223468889999999999999999999999998754321111111122233333344 567778888
Q ss_pred HHHHHHHHHhCcccccCch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHh
Q 000194 663 AKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALL 739 (1880)
Q Consensus 663 ~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~ 739 (1880)
+.+|..++....+.-.... ...++.|+..+++. ........++.++..|+.. . ...+.+ ..++|.++..+.
T Consensus 297 ~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~-~-~~~~~i~~~g~l~~Ll~lL~ 370 (780)
T 2z6g_A 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSVC-S-SNKPAIVEAGGMQALGLHLT 370 (780)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS-T-THHHHHHHTTHHHHHGGGTT
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhhcC-h-HHHHHHHHhchHHHHHHHHc
Confidence 8888877743221111000 13456677777754 1344555666777777642 2 222222 246788888888
Q ss_pred cCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCc
Q 000194 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1880)
Q Consensus 740 d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~ 819 (1880)
+. +...+..|+++|..++..... ......+++.|+.+|+. .++.+|..++.+|+.++.-.+.....
T Consensus 371 ~~-~~~~~~~a~~~L~~L~~~~~~----~~~~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~~~~~~~~~-------- 436 (780)
T 2z6g_A 371 DP-SQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKMM-------- 436 (780)
T ss_dssp CS-CHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSCHHHHHH--------
T ss_pred CC-chHHHHHHHHHHHHHhccchh----hhhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHH--------
Confidence 66 567888999999999876533 22346789999999975 47899999999999886422110000
Q ss_pred ccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCCh-hhhHHHHHHHHHHHHHHhCCC--C--C
Q 000194 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG--C--V 894 (1880)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~-~~~~~~~~~al~~i~~~~~~~--~--~ 894 (1880)
+ ...-.++.|++.|.+++. ......++.++..|....+.. . .
T Consensus 437 -----------------------i----------~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 437 -----------------------V----------CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp -----------------------H----------HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred -----------------------H----------HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 0 001245677777765322 234445666666553211100 0 0
Q ss_pred CCcchhhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHH--hHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHH
Q 000194 895 PYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQ--HIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHL 969 (1880)
Q Consensus 895 ~~l~~iip~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~~--~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 969 (1880)
-.-...+|.++..++..+. .++..+++.|+.+...-.. .+. ..++.++.++.....
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------------- 544 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ------------------- 544 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHH-------------------
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcch-------------------
Confidence 0013457888888877665 6888888888777642111 111 112222222221100
Q ss_pred HHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhh--hhhHHHHHHhhcCCCcHHH
Q 000194 970 VQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHM--HLLLPALIRLFKVDAPVDI 1045 (1880)
Q Consensus 970 i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~--~~ilp~l~~~l~~~~~~~v 1045 (1880)
+.+.....-+.. ..+.+. .....+...+..++..+...-. ..+ .-.+|.++.++... ...+
T Consensus 545 ----------~~~~~aa~al~n--q~~~~~--~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v 609 (780)
T 2z6g_A 545 ----------DTQRRTSMGGTQ--QQFVEG--VRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP-IENI 609 (780)
T ss_dssp ----------HHHHTTC--------CCSTT--CCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS-CHHH
T ss_pred ----------hHHHHHhhcccc--chhhcc--cChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC-CHHH
Confidence 000000000000 001010 0011222334444444332110 001 23689999999764 6789
Q ss_pred HHHHHHHHHhhcccccccchhH--hHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000194 1046 RRAAIETLTRLIPRVQVTGHIS--SLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF 1103 (1880)
Q Consensus 1046 r~~ai~~l~~l~~~~~~~~~~~--~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f 1103 (1880)
+..|..+|+.++........+. ..+..|...+.+++.++|..|..+|+.++......+
T Consensus 610 ~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~ 669 (780)
T 2z6g_A 610 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669 (780)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhh
Confidence 9999999999875422222222 257788899999999999999999999987655443
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.13 E-value=6.6e-09 Score=138.03 Aligned_cols=489 Identities=13% Similarity=0.048 Sum_probs=266.5
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH--HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc
Q 000194 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT 271 (1880)
Q Consensus 194 ~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~ 271 (1880)
..++.+...|+++++.||+.|+.+|+.+...-. .+.... ..+++.+...|.+..+.+++..|+.+|..|....
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-----~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-----SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-----HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-----hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 346677778889999999999999998764321 122221 3566777777765434678888888888765532
Q ss_pred hhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHHH
Q 000194 272 GEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIALG 346 (1880)
Q Consensus 272 ~~~~~~~~~--~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~--r~~a~~alg 346 (1880)
. ....+. ..++.++.++++.++.+|..++.+|..++........ .+. ...++.|+..|+++.. +..+..+|+
T Consensus 89 ~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~-~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 89 E--GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp H--HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred h--hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH-HHHHCCChHHHHHHHCcCCHHHHHHHHHHHH
Confidence 1 111111 3667788888899999999999999999976543221 122 5688899999987653 456778898
Q ss_pred HHHhhchhhhhhhh-hHHHHHHHHhhcCCCCC-CCchHHHHHHHHHHHhCCCchHHHH--HHHHHHHhcCCCHHHHHHHH
Q 000194 347 EMAGALDGELFHYL-PTITSHLREAIAPRRGK-PSLEALACVGNIARAMGPVMEPHVR--GLLDIMFSAGLSTTLVDALE 422 (1880)
Q Consensus 347 ~la~~v~~~~~p~l-~~i~~~l~~~l~~~~~~-~~~~a~~~l~~la~~~g~~~~~~l~--~ll~~l~~~~ls~~l~~~l~ 422 (1880)
.++...++.-.... ...++.+...+.+.... ....+..++..++. .+.....+- ..++.|+..-
T Consensus 166 ~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll---------- 233 (644)
T 2z6h_A 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHL---------- 233 (644)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTT----------
T ss_pred HHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHH----------
Confidence 88864333211111 23455555555433211 11234555555542 222222221 1223222210
Q ss_pred HHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCC--Ccch
Q 000194 423 QITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG--HDLL 500 (1880)
Q Consensus 423 ~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~--~~l~ 500 (1880)
..- +......|+.+|+.+...+ ....
T Consensus 234 ------~~~----------------------------------------------~~~~~~~a~~~L~nL~~~~~~~~~~ 261 (644)
T 2z6h_A 234 ------TDP----------------------------------------------SQRLVQNCLWTLRNLSDAATKQEGM 261 (644)
T ss_dssp ------TCS----------------------------------------------CHHHHHHHHHHHHHHGGGCTTCCSC
T ss_pred ------hcC----------------------------------------------CHHHHHHHHHHHHHHhhcchhhhhh
Confidence 000 0111122333333221100 0000
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH-HHHHHHHHHHHhcCCC-hhHH
Q 000194 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADAD-VTVR 578 (1880)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~-~~vR 578 (1880)
.-+-..+..++.++++++|..|+.+++.+....... ...++ ...++.|+......++ +.+|
T Consensus 262 ~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~-----------------~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 262 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN-----------------KMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-----------------HHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-----------------HHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 112233456677889999999998888775422100 00111 1245555555444333 7898
Q ss_pred HHHHHhccC---CCCcchh----hccHhhHHHHHHHhCCCC-HhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHH
Q 000194 579 HSIFSSLYG---NRGFDDF----LAQADCLSAIFAALNDED-FDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYL 649 (1880)
Q Consensus 579 ~~~l~~l~~---~~~fd~~----L~~~~~l~~L~~~l~D~~-~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l 649 (1880)
..++.+|.. ...-+.. +.....++.|...+.+++ ..+|..|+.+|+.++...... ..... ..+..++..+
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHH
Confidence 888777741 1010000 112346788888888775 799999999999998754321 11111 1122222222
Q ss_pred hcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--
Q 000194 650 EQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-- 727 (1880)
Q Consensus 650 ~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-- 727 (1880)
.. .+...|.+|++.++.-. +.+. .....+...++.++..|+... .....+
T Consensus 404 ~~--~~~~vr~~a~~al~n~~---------------------~~~~---~~~~~v~~~a~~aL~~La~~~--~~~~~l~~ 455 (644)
T 2z6h_A 404 VR--AHQDTQRRTSMGGTQQQ---------------------FVEG---VRMEEIVEGCTGALHILARDV--HNRIVIRG 455 (644)
T ss_dssp HH--HHHHHTTC-------------------------------CCS---SCHHHHHHHHHHHHHHHTTSH--HHHHHHHH
T ss_pred hc--cchhhhhHhhhccccch---------------------hccc---ccHHHHHHHHHHHHHHHhcCH--HHHHHHHh
Confidence 22 24455566666544310 0011 013456667777777766432 222222
Q ss_pred HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHccc
Q 000194 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGAL 804 (1880)
Q Consensus 728 ~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgal 804 (1880)
...+|.+++.+.+. +.+.+..|+.+|+.++...... ........++.|..++++ .++.+|..+..+|+.++.-
T Consensus 456 ~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~l~~~~~~~--~~i~~~g~l~~L~~ll~~-~~~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 456 LNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAA--EAIEAEGATAPLTELLHS-RNEGVATYAAAVLFRMSED 528 (644)
T ss_dssp TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSHHHH--HHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHHH--HHHHHcCChhHHHHHHcC-CCHHHHHHHHHHHHHHhcc
Confidence 24688999999876 5678999999999887531110 000111235667777764 4789999999999998643
No 43
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.09 E-value=7.8e-09 Score=139.37 Aligned_cols=457 Identities=15% Similarity=0.091 Sum_probs=277.9
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc-cHHHHHHHHHHHHH
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLIQLLTY 648 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~~~l~~ 648 (1880)
+.+++.++|..++..+... -+..+. ...++.|..++.+++..||+.|+.+|+.|+...+... .......+..++..
T Consensus 124 L~~~~~~~r~~a~~~l~~~--~~~~i~-~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~ 200 (780)
T 2z6g_A 124 LAEPSQMLKHAVVNLINYQ--DDAELA-TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 200 (780)
T ss_dssp --CCSCHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHhh--hHHHHH-hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHH
Confidence 4677888888887776410 012222 4568888888889999999999999999998643210 00011233344445
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCc-hHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPY-IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py-~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1880)
+..+ .+...|..|+.+|..++.... ..... -...++.|+..++++ ++.++..++.+|..++......-....
T Consensus 201 L~~~-~d~~vr~~Aa~aL~~Ls~~~~-~~~~i~~~g~I~~Lv~lL~~~-----~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 201 MQNT-NDVETARCTSGTLHNLSHHRE-GLLAIFKSGGIPALVNMLGSP-----VDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHC-CCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HcCC-CCHHHHHHHHHHHHHHhCCch-hHHHHHHcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 5554 578889999999999765421 11000 114677888888764 688999999999999876544333332
Q ss_pred -HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCc
Q 000194 728 -SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1880)
Q Consensus 728 -~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp 806 (1880)
...+|.+++.+.+. +...+..|+.+|..++......-..... ...++.|+.++++......+..+..++..+.....
T Consensus 274 ~~g~v~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 274 LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 46899999999864 5667888888888776432110000001 24577788888776666777777777777653111
Q ss_pred cchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Q 000194 807 HAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIF 886 (1880)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~ 886 (1880)
.... ....-+++.|+..|.+.+. .....++.++..+.
T Consensus 352 ~~~~------------------------------------------i~~~g~l~~Ll~lL~~~~~-~~~~~a~~~L~~L~ 388 (780)
T 2z6g_A 352 NKPA------------------------------------------IVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLS 388 (780)
T ss_dssp HHHH------------------------------------------HHHTTHHHHHGGGTTCSCH-HHHHHHHHHHHHHH
T ss_pred HHHH------------------------------------------HHHhchHHHHHHHHcCCch-HHHHHHHHHHHHHh
Confidence 0000 0011256778888877653 33445666666666
Q ss_pred HHhCCCCCCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHH---HHhHH--HhHHHHHHHHHHhhcCCCCCcccccc
Q 000194 887 KSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV---RQHIR--KYLQELFSLISELWSSFSLPATNRTY 961 (1880)
Q Consensus 887 ~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~---~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~ 961 (1880)
..... ......++|.++..++..++.+++.++..|+.+...- ++.+. .-++.++.++... .+ ++ .
T Consensus 389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~-~~----~ 458 (780)
T 2z6g_A 389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---GD-RE----D 458 (780)
T ss_dssp TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH---TT-CH----H
T ss_pred ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc---CC-HH----H
Confidence 54322 2345789999999999888889998888888776521 22221 2355555555431 11 00 1
Q ss_pred cchhHHHHHHHHHHHhhh------hhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhh----hhhHH
Q 000194 962 RGLPVLHLVQQLCLALND------EFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHM----HLLLP 1031 (1880)
Q Consensus 962 ~~~~~l~~i~~l~~~l~~------~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~----~~ilp 1031 (1880)
.+..++.++..++....+ .+. -...+|.+++.|.+.+ ...+...+..++..++..-...- ..++|
T Consensus 459 v~~~Al~aL~nL~~~~~~~~~~~~~v~--~~~~l~~L~~lL~~~~---~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~ 533 (780)
T 2z6g_A 459 ITEPAICALRHLTSRHQDAEMAQNAVR--LHYGLPVVVKLLHPPS---HWPLIKATVGLIRNLALCPANHAPLREQGAIP 533 (780)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHH--HTTCHHHHHHTTSTTC---CHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHH--HcCCHHHHHHHhcCCC---hHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHH
Confidence 122456666655431111 111 2345888999997532 22333444455555443222111 23577
Q ss_pred HHHHhhcCC---------------------CcHHHHHHHHHHHHhhcccccccch--hHhHHHHHHHhhCCCCHHHHHHH
Q 000194 1032 ALIRLFKVD---------------------APVDIRRAAIETLTRLIPRVQVTGH--ISSLVHHLKLVLDGKNDELRKDA 1088 (1880)
Q Consensus 1032 ~l~~~l~~~---------------------~~~~vr~~ai~~l~~l~~~~~~~~~--~~~ii~~l~~~l~~~~~~l~~~a 1088 (1880)
.++.++... .+.+++..++.+|+.++........ -...+++|+..+.++++.++..+
T Consensus 534 ~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a 613 (780)
T 2z6g_A 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 613 (780)
T ss_dssp HHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence 777776421 2356888999999998764221111 13457888999999999999999
Q ss_pred HHHHHHHH
Q 000194 1089 VDALCCLA 1096 (1880)
Q Consensus 1089 l~~L~~l~ 1096 (1880)
..+|+.++
T Consensus 614 ~~aL~~L~ 621 (780)
T 2z6g_A 614 AGVLCELA 621 (780)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999885
No 44
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.07 E-value=4.4e-07 Score=123.15 Aligned_cols=373 Identities=11% Similarity=0.151 Sum_probs=217.0
Q ss_pred ccCchHHHHHHHHHHhccCCCC-----C---------CChh---HHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHh
Q 000194 677 IRPYIAPIHKALVARLLEGTGI-----N---------ANNG---IISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL 739 (1880)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~-----~---------~~~~---v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~ 739 (1880)
+.|++..+..+++.++..+.+. + .+.+ +....-.++..++..++... +..+++.+.+.+.
T Consensus 411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~---~~i~~~~l~~~~~ 487 (1073)
T 3gjx_A 411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDT---EIIMTKKLQNQVN 487 (1073)
T ss_dssp THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHHhc
Confidence 4566777777777777644210 0 1111 11122345555554433222 2233444444333
Q ss_pred c-CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCC--CHH--HHHHHHHHHHHHcccCccchhhccc
Q 000194 740 D-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGEL--VWS--TRREVLKVLGIMGALDPHAHKRNQQ 814 (1880)
Q Consensus 740 d-~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~--~~~--vr~~~l~~lg~lgaldp~~~~~~~~ 814 (1880)
. .-++..++++++++|.++....... -....|++++.|+++..... +.+ ++..++.++|... .+..
T Consensus 488 ~~~~sW~~lea~~~aigaIag~~~~~~-E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~---~wl~----- 558 (1073)
T 3gjx_A 488 GTEWSWKNLNTLCWAIGSISGAMHEED-EKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP---RFLR----- 558 (1073)
T ss_dssp SCCCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH---HHHH-----
T ss_pred CCCCCHHHHhHHHHHHHHHHCcCCccc-ccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH---HHHH-----
Confidence 2 2357899999999999874332110 01235889999988774332 222 3333334544421 1100
Q ss_pred cCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCC-
Q 000194 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC- 893 (1880)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~- 893 (1880)
...+ |...+++.|+..+.|+. ..+..+++.|+..|...++..+
T Consensus 559 ----------------------------------~h~~-~L~~vl~~L~~~m~~~~-~~vq~aA~~af~~i~~~C~~~lv 602 (1073)
T 3gjx_A 559 ----------------------------------AHWK-FLKTVVNKLFEFMHETH-DGVQDMACDTFIKIAQKCRRHFV 602 (1073)
T ss_dssp ----------------------------------HCHH-HHHHHHHHHHHHTTCCS-TTHHHHHHHHHHHHHHHTGGGGT
T ss_pred ----------------------------------hCHH-HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 0111 44678888989887664 3567789999999999987654
Q ss_pred -------CCCcchhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh--HHHhHHHHHHHHHHhhcCCCC-----Cccc-
Q 000194 894 -------VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQH--IRKYLQELFSLISELWSSFSL-----PATN- 958 (1880)
Q Consensus 894 -------~~~l~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~--i~~y~~~i~~~i~~~~~~~~~-----~~~~- 958 (1880)
.||+++|+..+-.....-++.....++.++|.++...+.. ...++..+|+...+.|+.... ++-.
T Consensus 603 ~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~ 682 (1073)
T 3gjx_A 603 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILK 682 (1073)
T ss_dssp SCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG
T ss_pred hccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhcc
Confidence 4678888887777766666667778889999999877643 457788888888777764210 0000
Q ss_pred cc---ccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHH
Q 000194 959 RT---YRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIR 1035 (1880)
Q Consensus 959 ~~---~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~ 1035 (1880)
++ .....++.+...++.++|..|.+++..++|-+++.-+. ....+-+++..-|.....+ ++.+
T Consensus 683 d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~--------~s~~i~~~v~~~g~~~~~~------~~~~ 748 (1073)
T 3gjx_A 683 DPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKC--------LSENISAAIQANGEMVTKQ------PLIR 748 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCGGGGSS------HHHH
T ss_pred ChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCCchhhcc------HHHH
Confidence 00 11235677777889999999999999999988866432 1111222333334322211 1111
Q ss_pred hhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHHHHhh----CCCCHHHH-HHHHHHHHHHHHHhccccccchhH
Q 000194 1036 LFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHLKLVL----DGKNDELR-KDAVDALCCLAHALGEDFTIFIPS 1109 (1880)
Q Consensus 1036 ~l~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l~~~l----~~~~~~l~-~~al~~L~~l~~~~g~~f~~fip~ 1109 (1880)
.+ ..+|+..++.+...+.. -+.......++++|+..+ ....++-| ...+.++.+++.++|..+.+.+|.
T Consensus 749 ~~-----r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~ 823 (1073)
T 3gjx_A 749 SM-----RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQ 823 (1073)
T ss_dssp HH-----HHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHH
T ss_pred HH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHH
Confidence 11 23566666666654433 233333444444444332 22334444 557899999999999999999999
Q ss_pred HHHHHHh
Q 000194 1110 IHKLLLK 1116 (1880)
Q Consensus 1110 i~~~l~~ 1116 (1880)
|...+..
T Consensus 824 il~~vf~ 830 (1073)
T 3gjx_A 824 IFDAVFE 830 (1073)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887654
No 45
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.03 E-value=4.5e-08 Score=127.25 Aligned_cols=483 Identities=14% Similarity=0.080 Sum_probs=269.7
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH--HHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
+..++.++++.+|..|+.+++.+..... ....++ ...++.|+.....++++++|..+..+
T Consensus 22 Lv~lL~~~~~~v~~~A~~~L~~l~~~~~------------------~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEA------------------SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHH------------------HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHcCCc------------------cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3456778899999999998888763211 011112 24566666655556789999888777
Q ss_pred ccC-CCC--cchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHH
Q 000194 585 LYG-NRG--FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1880)
Q Consensus 585 l~~-~~~--fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1880)
|.. ... .-..+.....++.|...+++++..+|..|+.+|+.++...+.........-.++.+..+-.+ ++.+.+..
T Consensus 84 L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~ 162 (529)
T 1jdh_A 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAI 162 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHH
T ss_pred HHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHH
Confidence 742 011 00112233578889999999999999999999999988754321111111122233333344 56788888
Q ss_pred HHHHHHHHHHhCcccccCchH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHH
Q 000194 662 SAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEAL 738 (1880)
Q Consensus 662 a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l 738 (1880)
++.+|..++...++.-..... ..++.++..+++. ........+..++..++. .......+ ...+|.+++.+
T Consensus 163 ~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~----~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~g~~~~L~~ll 236 (529)
T 1jdh_A 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHL 236 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTT--STTHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC----ChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHH
Confidence 888998887543221111111 2455666667664 244555666667766653 22223322 35788888888
Q ss_pred hcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCC
Q 000194 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1880)
Q Consensus 739 ~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~ 818 (1880)
.+. +...+..|+++|+.++..... ......+++.|++++++ .++.+|..++.+++.++.-++-...
T Consensus 237 ~~~-~~~~~~~a~~~L~~l~~~~~~----~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~-------- 302 (529)
T 1jdh_A 237 TDP-SQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTCNNYKNKM-------- 302 (529)
T ss_dssp TSS-CHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTTCHHHHH--------
T ss_pred hCC-ChHHHHHHHHHHHHHhcCChh----hHHHHhHHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHH--------
Confidence 876 577889999999999876532 22345789999999965 4789999999999888542211000
Q ss_pred cccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCCh-hhhHHHHHHHHHHHHHHhCCC--CC-
Q 000194 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG--CV- 894 (1880)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~-~~~~~~~~~al~~i~~~~~~~--~~- 894 (1880)
.....-+++.|++.|.+++. ......++.++..+....+.. ..
T Consensus 303 ---------------------------------~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 303 ---------------------------------MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp ---------------------------------HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ---------------------------------HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 00011245677777764321 234445666666553211110 00
Q ss_pred C-CcchhhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHH--HhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHH
Q 000194 895 P-YLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVR--QHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968 (1880)
Q Consensus 895 ~-~l~~iip~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~--~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~ 968 (1880)
. .-...+|.++..++...+ .++..+++.++.+...-. +.+. ..++.++..+...... ++. .+..
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---------v~~-~a~~ 419 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD---------TQR-RTSM 419 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH---------HC------
T ss_pred HHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH---------HHH-HHhc
Confidence 0 012457788888877653 677777776666653110 0111 1223333333211100 000 0111
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhh--hh--hhhHHHHHHhhcCCCcHH
Q 000194 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE--HM--HLLLPALIRLFKVDAPVD 1044 (1880)
Q Consensus 969 ~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~--~~--~~ilp~l~~~l~~~~~~~ 1044 (1880)
++...+ +.+. .........++.++..+....+. .+ .-.+|.++.++..+ ..+
T Consensus 420 ~l~n~~---------------------~~~~--~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~-~~~ 475 (529)
T 1jdh_A 420 GGTQQQ---------------------FVEG--VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IEN 475 (529)
T ss_dssp ---------------------------CBTT--BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS-CHH
T ss_pred ccCchh---------------------hhcc--ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC-chH
Confidence 111000 0000 00111222333444333322110 00 23578899888764 578
Q ss_pred HHHHHHHHHHhhcccccccchh--HhHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000194 1045 IRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLDGKNDELRKDAVDALCCL 1095 (1880)
Q Consensus 1045 vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~~~~~~l~~~al~~L~~l 1095 (1880)
+|..+..+++.++........+ ...++.|.+.+.+++++++..|..+|..|
T Consensus 476 v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 476 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 9999999999987532111111 23467788899989999999999988765
No 46
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.00 E-value=3.5e-08 Score=131.09 Aligned_cols=432 Identities=15% Similarity=0.092 Sum_probs=268.3
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
.++.|...+++++..||..|..+|+.++...+.. ...+ ...+..++..+..+ .+...+..|+..|..++.......
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~ 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLL 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHH
Confidence 5788888889999999999999999999877521 1111 13344455555554 578889999999988765421110
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
..+-...++.|+..+.++ ++.++..++.+|..++........... ...+|.+++.|.+. +...+..++.+|..
T Consensus 93 ~i~~~g~i~~Lv~lL~~~-----~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSP-----VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQI 166 (644)
T ss_dssp HHHTTTHHHHHHHHTTCS-----SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHH
Confidence 011124677788888764 688999999999999876543333333 57899999999876 45677788889998
Q ss_pred HHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCC
Q 000194 757 VVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836 (1880)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1880)
++......-... .-...++.|+.++++.....++..+++++..++.-......
T Consensus 167 La~~~~~~~~~i-~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~-------------------------- 219 (644)
T 2z6h_A 167 LAYGNQESKLII-LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA-------------------------- 219 (644)
T ss_dssp HHTTCHHHHHHH-HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHH--------------------------
T ss_pred HHhcCcHHHHHH-HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHH--------------------------
Confidence 875322110000 01245778888887776778888888888877631110000
Q ss_pred cccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchh
Q 000194 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLK 916 (1880)
Q Consensus 837 ~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~ 916 (1880)
....-+++.|++.+++++. .....++.++..+...... ......++|.++..++..++.++
T Consensus 220 ----------------l~~~g~l~~L~~ll~~~~~-~~~~~a~~~L~nL~~~~~~--~~~~~~~i~~Lv~lL~~~d~~v~ 280 (644)
T 2z6h_A 220 ----------------IVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVV 280 (644)
T ss_dssp ----------------HHHTTHHHHHHTTTTCSCH-HHHHHHHHHHHHHGGGCTT--CCSCHHHHHHHHHHTTCSCHHHH
T ss_pred ----------------HHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcchh--hhhhhhHHHHHHHHHcCCCHHHH
Confidence 0011256778888877653 3445666777776554322 24567899999999998888889
Q ss_pred HHHHHHHHHHHHHH---HHhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhh--hhhc--cchh
Q 000194 917 DYITWKLGTLVSIV---RQHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALND--EFRT--HLPV 987 (1880)
Q Consensus 917 ~~~~~~l~~lv~~~---~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~--~f~~--yl~~ 987 (1880)
+.++..|+.+...- ++.+. .-++.++.++... .+. +..+..++.++..++...++ .... .-..
T Consensus 281 ~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~---~~~-----~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~ 352 (644)
T 2z6h_A 281 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---GDR-----EDITEPAICALRHLTSRHQEAEMAQNAVRLHY 352 (644)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH---TTC-----HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc---CCc-----HHHHHHHHHHHHHHhcCCchHHHHHHHHHHcc
Confidence 98888888776521 22222 2345555555432 100 01122456666666432111 0010 1134
Q ss_pred hHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhh--h--hhhHHHHHHhhcCC---------------------Cc
Q 000194 988 ILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEH--M--HLLLPALIRLFKVD---------------------AP 1042 (1880)
Q Consensus 988 l~p~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~--~--~~ilp~l~~~l~~~---------------------~~ 1042 (1880)
.+|.+++.|.+.+ +..+...+..++..+...-... + .-++|.++.++... .+
T Consensus 353 ~l~~L~~lL~~~~---~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~ 429 (644)
T 2z6h_A 353 GLPVVVKLLHPPS---HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 429 (644)
T ss_dssp HHHHHHHTTSTTC---CHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCH
T ss_pred ChHHHHHHhCccC---chHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccH
Confidence 6888999997532 2233444555555544322111 1 23577777776431 35
Q ss_pred HHHHHHHHHHHHhhcccccccchh--HhHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000194 1043 VDIRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1880)
Q Consensus 1043 ~~vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1880)
.+++..++.+|..++........+ ...+++|+..+.+++++++..+..+|+.++
T Consensus 430 ~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 430 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 678889999999888753222222 246788889999888999999999998875
No 47
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.99 E-value=9.5e-05 Score=100.52 Aligned_cols=383 Identities=14% Similarity=0.158 Sum_probs=207.7
Q ss_pred CCHhHHHHHHHHHHhhhcCCccc-ccHHHHHHHHHHHHHHhcCC-CChHh--HHHHHHHHHHHHHhCcccccCchHHHHH
Q 000194 611 EDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSS-ADNKC--REESAKLLGCLIRNCERLIRPYIAPIHK 686 (1880)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~-~~~~~--r~~a~~~L~~l~~~~~~~~~py~~~il~ 686 (1880)
.+...+++++.++|.++...... -.+.+.+++..++.-.++.. .+.+. +...+.++|...+-... -..|+++++.
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~-h~~~L~~vl~ 569 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA-HWKFLKTVVN 569 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh-CHHHHHHHHH
Confidence 46889999999999997644321 11233333322222222210 11221 22233455544332211 1357888888
Q ss_pred HHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCch--------hhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 687 ALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM--------RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 687 ~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~--------~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
-++..+.+. ++.|...++.|+..++..++..+ .||+.+++..+-....+- +......-..++|.++
T Consensus 570 ~L~~~m~~~-----~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-~~~~~~~lyeav~~vi 643 (1073)
T 3gjx_A 570 KLFEFMHET-----HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-QPQQVHTFYEAVGYMI 643 (1073)
T ss_dssp HHHHHTTCC-----STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 888888764 78899999999999998887655 568898888888776654 2333345567888888
Q ss_pred hhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcc
Q 000194 759 QSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDE 838 (1880)
Q Consensus 759 ~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (1880)
...+... ..+.+++.|+...... |. . .+..-+ + ..+
T Consensus 644 ~~~p~~~----~~~~~i~~Lm~~~~~~--w~--~----l~~~~~----------~---------------------~~~- 679 (1073)
T 3gjx_A 644 GAQTDQT----VQEHLIEKYMLLPNQV--WD--S----IIQQAT----------K---------------------NVD- 679 (1073)
T ss_dssp TTCCCHH----HHHHHHHHHTHHHHHH--HH--H----HHHHHH----------H---------------------CGG-
T ss_pred HhCCCcc----hHHHHHHHHHHHHHHH--HH--H----HHHHhh----------c---------------------Cch-
Confidence 7765421 1355666666543211 10 0 000000 0 000
Q ss_pred cccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHhcCCcchhHH
Q 000194 839 FPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDY 918 (1880)
Q Consensus 839 ~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~~~~~~~~~l~~iip~ll~~l~~~~~~~~~~ 918 (1880)
++ .+ ..++..|..+| ++...++.++|..|.|++..+.|.+++.-+..+.
T Consensus 680 ----~~------~d---~~~i~~l~~il-------------~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~----- 728 (1073)
T 3gjx_A 680 ----IL------KD---PETVKQLGSIL-------------KTNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSE----- 728 (1073)
T ss_dssp ----GG------GC---HHHHHHHHHHH-------------HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ----hc------cC---hHHHHHHHHHH-------------hhhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH-----
Confidence 00 00 11233444433 3445667889998888888888888766543211
Q ss_pred HHHHHHHHHHHHH---------HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhH
Q 000194 919 ITWKLGTLVSIVR---------QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVIL 989 (1880)
Q Consensus 919 ~~~~l~~lv~~~~---------~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~ 989 (1880)
.++..+..-| ..+|-.=.+|+.++..+...... ...--..++|+++
T Consensus 729 ---~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~----------------------~~~v~~~~i~pl~ 783 (1073)
T 3gjx_A 729 ---NISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSND----------------------PQMVAENFVPPLL 783 (1073)
T ss_dssp ---HHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSC----------------------HHHHHHHTSHHHH
T ss_pred ---HHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCC----------------------HHHHHHHhHHHHH
Confidence 1111111101 11222223344444433332210 0011234455555
Q ss_pred HHHHHhcccccccCch-hhHHHHHHHHH-HHhcchhhhhhhhHHHH----HHhhcCC--CcHHHHHHHHHHHHhhccc--
Q 000194 990 PCCIQVLSDAERCNDY-TYVLDILHTLE-VFGGTLDEHMHLLLPAL----IRLFKVD--APVDIRRAAIETLTRLIPR-- 1059 (1880)
Q Consensus 990 p~ll~~l~~~~~~~~~-~~~~~il~~l~-~~g~~~~~~~~~ilp~l----~~~l~~~--~~~~vr~~ai~~l~~l~~~-- 1059 (1880)
..++.--.+.. ...| .-++.++.++. .+|..+.+.+..|+..+ +.++.++ ..++.|..=.+.+..+...
T Consensus 784 ~~vl~dY~~~~-p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f 862 (1073)
T 3gjx_A 784 DAVLIDYQRNV-PAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCF 862 (1073)
T ss_dssp HHTHHHHHHSC-GGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhcCC-cccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHh
Confidence 55554332210 0011 12344444443 36766666666655544 3456544 5678888888888777553
Q ss_pred ---ccccc-hhHhHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000194 1060 ---VQVTG-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101 (1880)
Q Consensus 1060 ---~~~~~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~ 1101 (1880)
.++.+ ....++..++-.++..++++-+.++.++..++.++..
T Consensus 863 ~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~ 908 (1073)
T 3gjx_A 863 PAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 908 (1073)
T ss_dssp GGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc
Confidence 12222 4566888888888878899999999999999988764
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.98 E-value=4.3e-07 Score=118.52 Aligned_cols=507 Identities=13% Similarity=0.098 Sum_probs=282.6
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh
Q 000194 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~ 247 (1880)
.++.+-..++..+..|-+. ...+..+++.+.+++..+|+.+.-++..++. ..++....+...+...
T Consensus 54 ~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--------~~~e~~~L~iN~l~kD 119 (621)
T 2vgl_A 54 SKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVN--------SNSELIRLINNAIKND 119 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--------CCcHHHHHHHHHHHHh
Confidence 3445555555444444322 2345666788899999999999988776542 1234455666777778
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh--hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHH
Q 000194 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL--EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICM 325 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~--~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~ 325 (1880)
+.+++ .-++-.|+.+++.+. .+ ...+.+...+...+ .++++.||+.|+.++..+....|+.. + + +..+
T Consensus 120 l~~~n-~~ir~lALr~L~~i~--~~----e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~-~-~~~~ 189 (621)
T 2vgl_A 120 LASRN-PTFMGLALHCIANVG--SR----EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-P-M-GDWT 189 (621)
T ss_dssp HHSCC-HHHHHHHHHHHHHHC--CH----HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-C-C-CSCH
T ss_pred cCCCC-HHHHHHHHHHhhccC--CH----HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-C-c-hhHH
Confidence 88775 455666666666552 22 23445667778888 89999999999999999998777543 2 1 2456
Q ss_pred HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCCC---C-------CCc---hHHHHHHHHH
Q 000194 326 NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRG---K-------PSL---EALACVGNIA 390 (1880)
Q Consensus 326 ~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~~---~-------~~~---~a~~~l~~la 390 (1880)
+.+...|.+.+ .+..|+.+++.++..-++.+.++++.++..+...+....- + ... .++..++.
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~-- 267 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC-- 267 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG--
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH--
Confidence 66677775433 3678888899988877776778888888877766533211 0 001 12222222
Q ss_pred HHhCC----CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000194 391 RAMGP----VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPS--LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464 (1880)
Q Consensus 391 ~~~g~----~~~~~l~~ll~~l~~~~ls~~l~~~l~~i~~~~p~--l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 464 (1880)
+++ .....+.++++.+++.. ...|. .......
T Consensus 268 --~~~~~d~~~~~~l~~~L~~il~~~-------------~~~~ks~~l~~~n~--------------------------- 305 (621)
T 2vgl_A 268 --YPPPEDPAVRGRLTECLETILNKA-------------QEPPKSKKVQHSNA--------------------------- 305 (621)
T ss_dssp --SSSCSSHHHHHHHHHHHHHHHHHH-------------HSCCSCSSHHHHHH---------------------------
T ss_pred --hCCCCCHHHHHHHHHHHHHHHHhh-------------ccCcccccccccch---------------------------
Confidence 222 11111222222222100 00000 0000000
Q ss_pred CccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCC
Q 000194 465 NVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGA 544 (1880)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~ 544 (1880)
.....-.|.+++..+.- ...+....-..+..++.+.++++|..|..++..+....+.
T Consensus 306 -------------~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--------- 362 (621)
T 2vgl_A 306 -------------KNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--------- 362 (621)
T ss_dssp -------------HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---------
T ss_pred -------------HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---------
Confidence 00001112222222110 0011111112334567777899999998888887643210
Q ss_pred ccccccccchhHHHHHHHHHHHHHHhc-CCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHH
Q 000194 545 SRSNRTGGKRRRLIEELVEKLLIAAVA-DADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVA 623 (1880)
Q Consensus 545 ~~~~~~~~~~~~~~~~vl~~Ll~~~~~-d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1880)
...+......++. ++. |+|+.||..+++.+.. -.++ -.-..++..|...+.+.+.+.|..++..+
T Consensus 363 ----------~~~~~~~~~~i~~-~L~~d~d~~Ir~~aL~lL~~--l~~~-~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I 428 (621)
T 2vgl_A 363 ----------HEAVKTHIETVIN-ALKTERDVSVRQRAVDLLYA--MCDR-SNAQQIVAEMLSYLETADYSIREEIVLKV 428 (621)
T ss_dssp ----------HHHHHTTHHHHHH-HHTTCCCHHHHHHHHHHHHH--HCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHH-HhccCCCHhHHHHHHHHHHH--HcCh-hhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1223333333333 345 9999999998887731 0000 00124566666777788899999999999
Q ss_pred HhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChh
Q 000194 624 GRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNG 703 (1880)
Q Consensus 624 ~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~ 703 (1880)
+.++...|... ...-.++.+++..-. + ....++...+..++...++ ++.| .+..++..+.++. ....
T Consensus 429 ~~la~k~~~~~-~~~v~~Ll~ll~~~~----~-~v~~ev~~~l~~ii~~~~~-~~~~---~~~~l~~~l~~~~---~~~~ 495 (621)
T 2vgl_A 429 AILAEKYAVDY-TWYVDTILNLIRIAG----D-YVSEEVWYRVIQIVINRDD-VQGY---AAKTVFEALQAPA---CHEN 495 (621)
T ss_dssp HHHHHHHCSST-HHHHHHHHHHHHHHG----G-GSCSHHHHHHHHHHGGGCS-CHHH---HHHHHHHHHTSSS---CCHH
T ss_pred HHHHHhcCCcH-HHHHHHHHHHHHhhc----c-cchHHHHHHHHHHHhCChh-HHHH---HHHHHHHHHcCcc---chHH
Confidence 99987765433 223334555554321 1 1333455666667665442 3333 4566677777642 3445
Q ss_pred HHHHHHHHHHHHHHhcCCc--hhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHH
Q 000194 704 IISGVLVTVGDLARVGGFG--MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1880)
Q Consensus 704 v~~~~~~~l~~La~~~g~~--~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1880)
+...++..+|+-+...... ..| .+++..+.+.+.+. +..+|..++.++.++....+. ..+.+..+++.
T Consensus 496 li~~~~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~~~-~~~v~~~~Lta~~Kl~~~~p~-------~~~~i~~~l~~ 565 (621)
T 2vgl_A 496 LVKVGGYILGEFGNLIAGDPRSSP--LIQFNLLHSKFHLC-SVPTRALLLSTYIKFVNLFPE-------VKATIQDVLRS 565 (621)
T ss_dssp HHHHHHHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHCGG-------GHHHHHHHHSS
T ss_pred HHHHHHHHhcchHHHhcccCCCCH--HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHChH-------HHHHHHHHHHH
Confidence 6666668888876543221 111 24455666666544 578999999999988654321 11233333333
Q ss_pred hcC--CCCHHHHHHHHHHHHHHc
Q 000194 782 LNG--ELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 782 L~~--~~~~~vr~~~l~~lg~lg 802 (1880)
... +.+.++|..|......+.
T Consensus 566 ~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 566 DSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHc
Confidence 333 568999999988877664
No 49
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.95 E-value=1.5e-07 Score=122.31 Aligned_cols=308 Identities=8% Similarity=-0.024 Sum_probs=187.3
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCch
Q 000194 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1880)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~ 147 (1880)
...+.+++++++...|..|+.++..|.... .....+ ....+.|..++...+|.++...|+++|..|+.... ...
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~--~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~-~~~ 95 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLL 95 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-HHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCC--ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-hHH
Confidence 444556777888999999999999887542 111111 12344555555434589999999999999876421 111
Q ss_pred hHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc-hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 000194 148 DEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH-VAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 148 ~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~-l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1880)
.+++ ..++.+++.|.+ .++..|..|+.+|..++...+..-... -...++.+...|.++++.+|..++.+|..+...
T Consensus 96 ~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~- 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG- 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-
Confidence 1222 245666666654 346678889999999998755431111 146788999999999999999999988865421
Q ss_pred hhhchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHH
Q 000194 226 EKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSIT 302 (1880)
Q Consensus 226 ~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~Vr~~~~ 302 (1880)
....+.... ...++.+..-+.+.++...+.+++.+|..+..+.. ....+ ...++.++..+.+.++.+++.++
T Consensus 174 ---~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 174 ---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT--HHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred ---CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 111111111 12334444444444445566666667766654221 12222 13566777777888899999999
Q ss_pred HHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh-hHHHHHHHHhhcCCC--CC
Q 000194 303 SLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRR--GK 377 (1880)
Q Consensus 303 ~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~l~~~~--~~ 377 (1880)
.++..++...+..- .....++.|...|...+ .|..|..+|+.++..-.+...... ...++.+.+.+.... ..
T Consensus 249 ~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 249 WTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 99999987654321 23567888888886543 467899999998764332211111 123444455453221 12
Q ss_pred CCchHHHHHHHHHH
Q 000194 378 PSLEALACVGNIAR 391 (1880)
Q Consensus 378 ~~~~a~~~l~~la~ 391 (1880)
.+..++.+++.++.
T Consensus 326 v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 326 ITEPAICALRHLTS 339 (529)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHc
Confidence 23467777777653
No 50
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.4e-08 Score=116.09 Aligned_cols=189 Identities=8% Similarity=-0.001 Sum_probs=150.9
Q ss_pred CCChHHHHHHHHHHHH-HhhhCCCCc---hhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC-ccch-hchHHH
Q 000194 122 KRDREILVLASKVLGH-LARAGGAMT---ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS-TVFN-VHVAEF 195 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~-L~~~~g~~~---~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p-~~l~-~~l~~i 195 (1880)
+.+-.-++.|...++. ++....... .+|- ..+..+..++..+.+...|.+|+.++++|+.+.. ..|. +|...+
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~-~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS-NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 5688999999999999 875422222 2332 3366666677556777789999999999999988 7888 999999
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---
Q 000194 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--- 272 (1880)
Q Consensus 196 ~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--- 272 (1880)
+|.|+..+.|+++.||+++..|+..++..+.. ... ..++..+++.+...++++ .|.++.+++.+++.++...+
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~--~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LAS--SGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCT--TCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-ccc--CCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999988775421 100 001456788888888776 48999999999999998665
Q ss_pred hhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000194 273 EFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1880)
Q Consensus 273 ~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~ 315 (1880)
+.+.+++ +++++.+..++++.++.||.+++.+++.++...++.
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 4577899 999999999999999999999999999998765543
No 51
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.92 E-value=1.8e-07 Score=110.10 Aligned_cols=189 Identities=12% Similarity=0.106 Sum_probs=142.4
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHH-
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLT- 647 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~- 647 (1880)
.+.|+++.+|..++.+|+. +..++.++.|...++|+++.||..|+..|+.+..... . .+. +..++.
T Consensus 31 ~L~~~~~~vr~~A~~~L~~-------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~-~~~----l~~~L~~ 97 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQL-------RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-C-EDN----VFNILNN 97 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHH-------HCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-T-HHH----HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHc-------cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-c-chH----HHHHHHH
Confidence 4689999999999999852 1235678999999999999999999999999874321 1 222 222332
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH
Q 000194 648 YLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1880)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1880)
.+..+ +++..|..+++.|+.+....+ ++.+.+++.++..+.++ ++.++..++.+++.+..
T Consensus 98 ~~~~d-~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~-----~~~vR~~a~~aL~~~~~---------- 157 (280)
T 1oyz_A 98 MALND-KSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-----STNVRRATAFAISVIND---------- 157 (280)
T ss_dssp HHHHC-SCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHTC------------
T ss_pred HHhcC-CCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC-----CHHHHHHHHHHHHhcCC----------
Confidence 22344 678999999999999986543 34567788888888875 78999999988886643
Q ss_pred HhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 728 ~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+..+|.++..+.|. +..+|..|+.+||.+.. ..+..++.|...++++ ++.+|..++.+||.+|
T Consensus 158 ~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 KATIPLLINLLKDP-NGDVRNWAAFAININKY----------DNSDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhcc----------CcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence 23678888888876 57799999999998621 1257888899888754 7899999999999876
No 52
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.91 E-value=6.8e-08 Score=124.81 Aligned_cols=356 Identities=14% Similarity=0.107 Sum_probs=219.8
Q ss_pred HHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhc-CCChhhhhhHHHHHhHhhcccc
Q 000194 25 ALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLE-SNDAAENLGALRAIDELIDVAL 101 (1880)
Q Consensus 25 ~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~-s~~~~~r~~~i~ai~~Li~~~~ 101 (1880)
.+..+++++.|.+.+.+ .|...+++++ .++-.+ .....+ .-+.+.+.++++ +.+...+..|..++..+.....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklL---s~~~~~-~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLL---SREKQP-PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHH---TSSSCC-CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH---cCCCCc-hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 47889999999864443 4777777765 222221 111111 124556667775 4557788888899998875531
Q ss_pred CcchhHHH-HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHH-HHHHHHhhhcCCCcc----hhHHHHHH
Q 000194 102 GENASKVS-KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVE----YRRFAAVL 175 (1880)
Q Consensus 102 ~~~~~~~~-~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~----~~R~aA~~ 175 (1880)
......+. -..+.|..++. +.+.++...|+++|+.|+..+......+++. .++.++..|...... .....++.
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 11111111 13467777775 6789999999999999987521111112221 355666676543222 23445667
Q ss_pred HHHHHHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH--HHHHHHHHHhhccCCC
Q 000194 176 ILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNA 252 (1880)
Q Consensus 176 ~l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~~l~~~~~~l~~~~ 252 (1880)
++..++.+. |..-...+..++|.++..+.++++.|+..|+.||+.+...-. ...+. -..+++.+..-+.+++
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~-----~~~~~v~~~g~i~~Lv~lL~~~~ 306 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-----ERIEMVVKKGVVPQLVKLLGATE 306 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-----HHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh-----hhHHHHHhccchHHHHHHhcCCC
Confidence 777787764 333345677899999999999999999999999987654211 11111 1235566666666654
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHh
Q 000194 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTV 331 (1880)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~ 331 (1880)
..++..++.+++.++.+..+....-.+ ..++.+..++.+.++.||+.++.+|..++...+.....-.-..+++.|...
T Consensus 307 -~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~l 385 (529)
T 3tpo_A 307 -LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 385 (529)
T ss_dssp -HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHH
Confidence 678889999999887644322111111 244566777889999999999999999998766532211113578888888
Q ss_pred hcCCC--CcchHHHHHHHHHhhchhhhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHH
Q 000194 332 LRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIAR 391 (1880)
Q Consensus 332 L~~~~--~r~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~ 391 (1880)
|.+.. .|..|..+|++++.....+...++ ..+++.+.+.|...+.+....++.++..|..
T Consensus 386 L~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 386 LSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 87664 467889999998765433322333 2355666666654433323345556655544
No 53
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.90 E-value=4.1e-08 Score=126.01 Aligned_cols=355 Identities=14% Similarity=0.101 Sum_probs=219.5
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccC
Q 000194 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD-QLYDRISGLLES-NDAAENLGALRAIDELIDVALG 102 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~-~l~~~i~~l~~s-~~~~~r~~~i~ai~~Li~~~~~ 102 (1880)
+..++++|.|.+.+.+ .|+.++++++ .++-.+- ....++ -+.+.+.+++++ .+...+..|..|+..|.....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rkll---s~e~~pp-i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~- 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLL---SREKQPP-IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS- 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHH---TCSSCCC-HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCch-HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-
Confidence 7888999999875444 4888888876 2332211 112211 135667777764 456778889999999875431
Q ss_pred cchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcc----hhHHHHHH
Q 000194 103 ENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVE----YRRFAAVL 175 (1880)
Q Consensus 103 ~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~----~~R~aA~~ 175 (1880)
+....+. -..+.|..++. +.+.++++.|+++|+.|+..+......+++ ..++.++..+...... .....++.
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 1111111 13466777775 678999999999999998742111111112 1355566666543222 23345667
Q ss_pred HHHHHHhhc-CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH--HHHHHHHHHhhccCCC
Q 000194 176 ILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNA 252 (1880)
Q Consensus 176 ~l~~la~~~-p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~~l~~~~~~l~~~~ 252 (1880)
.+..++.+. |..-...+..++|.+...+.++++.|+..|+.||+.+...- ....+. -..+++.+..-+.+++
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~-----~~~~~~i~~~g~i~~Lv~lL~~~~ 287 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-----NERIEMVVKKGVVPQLVKLLGATE 287 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-----HHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch-----hhhHHHHHhcccchhhhhhhcCCC
Confidence 777787764 33444567789999999999999999999999998764321 111111 1234566666666654
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHh
Q 000194 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTV 331 (1880)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~ 331 (1880)
..++..++.+++.+.....+....-.+ ..++.+..++.+.++.||+.++.++..++...+.....-.-..+++.|...
T Consensus 288 -~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~l 366 (510)
T 3ul1_B 288 -LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366 (510)
T ss_dssp -HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred -hhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Confidence 678889999999887644322111111 133445566788899999999999999998766532211113578888888
Q ss_pred hcCCC--CcchHHHHHHHHHhhchhhhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 332 LRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 332 L~~~~--~r~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
+.+.. .|..|..+|++++.....+...++ ..+++.+.+.|...+.+....++.++..|...
T Consensus 367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 87654 467899999998865433322333 23556666666544333334566666666543
No 54
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.80 E-value=6.4e-07 Score=114.89 Aligned_cols=397 Identities=13% Similarity=0.109 Sum_probs=219.0
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh
Q 000194 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF 274 (1880)
Q Consensus 196 ~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~ 274 (1880)
++-++.++...++.++..|..+++.++.. ++.+.. ...+ ..++|.+..-|+..+..+.+..|+-+|..|..+..+.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~--e~~ppi-~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSR--EKQPPI-DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTC--SSCCCH-HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC--CCCchH-HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 56677889999999999999999887642 122222 2222 3467888888876555677888888999887654433
Q ss_pred hHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCCc-------chHHHHH
Q 000194 275 MMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAER-------DSGFIAL 345 (1880)
Q Consensus 275 ~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~r-------~~a~~al 345 (1880)
-..-.+ ..++.++.++.++++.||+.++.+|+.+|...+. ..+... ...++.|+..|..+... ..+..++
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 222222 2567788888999999999999999999976553 111111 24577777887754321 1344445
Q ss_pred HHHHhhchhh-hhhhhhHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000194 346 GEMAGALDGE-LFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQI 424 (1880)
Q Consensus 346 g~la~~v~~~-~~p~l~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~~~~~~l~~ll~~l~~~~ls~~l~~~l~~i 424 (1880)
+.++...... -......+++.+...+.....+....++.|++.|+..
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~-------------------------------- 262 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG-------------------------------- 262 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--------------------------------
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--------------------------------
Confidence 5444322110 0011233344444433222111111122222111110
Q ss_pred HHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH
Q 000194 425 TVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR 504 (1880)
Q Consensus 425 ~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~~~~~~l~~~v~ 504 (1880)
.. ....+ +.. .| +.
T Consensus 263 -----------------------------------------------------~~-~~~~~---i~~---~g------~i 276 (510)
T 3ul1_B 263 -----------------------------------------------------PN-ERIEM---VVK---KG------VV 276 (510)
T ss_dssp -----------------------------------------------------CH-HHHHH---HHT---TT------CH
T ss_pred -----------------------------------------------------hh-hhHHH---HHh---cc------cc
Confidence 00 00000 000 01 11
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
..+..++.+++..++..|+.+++.+..... ..... + +..
T Consensus 277 ~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~---------------------~~~~~----i----------------~~~ 315 (510)
T 3ul1_B 277 PQLVKLLGATELPIVTPALRAIGNIVTGTD---------------------EQTQK----V----------------IDA 315 (510)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---------------------HHHHH----H----------------HHT
T ss_pred hhhhhhhcCCChhhhhHHHHHHHHhhcCCH---------------------HHHHH----H----------------hhc
Confidence 223456777888899888888777653110 00011 1 110
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
..++.|...+.+++..+|..|..+|+.++..++.........-++..+..+..+ ++.+.|.+|++
T Consensus 316 --------------g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~ 380 (510)
T 3ul1_B 316 --------------GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAW 380 (510)
T ss_dssp --------------TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHH
T ss_pred --------------cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHH
Confidence 112333445678888999999999999998876543333322223333333344 67899999999
Q ss_pred HHHHHHHhCcccccCch--HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCC--chhhh---HHh--HHHHHH
Q 000194 665 LLGCLIRNCERLIRPYI--APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF--GMRQY---ISE--LMPLIV 735 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~--~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~--~~~~~---~~~--l~p~l~ 735 (1880)
+|+.++.........|+ ..+++.|+..+... ++.++..++.+|..+...+.. ...+| +.+ .+.. +
T Consensus 381 aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~-----d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~-i 454 (510)
T 3ul1_B 381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-----DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK-I 454 (510)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH-H
T ss_pred HHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH-H
Confidence 99999876432211121 13566777777764 788998999998887765431 11122 111 1222 3
Q ss_pred HHHhcCCchhhHHHHHHHHHH
Q 000194 736 EALLDGAAVTKREVAVSTLGQ 756 (1880)
Q Consensus 736 ~~l~d~~~~~~r~~Al~~Lg~ 756 (1880)
+.|+...+.+.++.|...|.+
T Consensus 455 e~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 455 EALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHH
Confidence 344544455566666655554
No 55
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.79 E-value=3.3e-07 Score=107.85 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=163.9
Q ss_pred hHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHH
Q 000194 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560 (1880)
Q Consensus 481 ~~~~Al~~L~~~~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1880)
....|+..|+.+.- +-..+.+..++.++++.||..|+.+++.+.... ..+..
T Consensus 39 vr~~A~~~L~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~----------------------~~~~~ 90 (280)
T 1oyz_A 39 KRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK----------------------KCEDN 90 (280)
T ss_dssp HHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT----------------------TTHHH
T ss_pred HHHHHHHHHHccCC------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc----------------------ccchH
Confidence 44568888887631 223344557788899999999998887653110 11333
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh--hccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH
Q 000194 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF--LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1880)
Q Consensus 561 vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~--L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1880)
+++.|...+..|+++.||..++.+|+. +... -..+..++.|...++|+++.||..|+..|+.+.. | ...|.+
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~---l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--~-~~~~~L 164 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQ---RCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--K-ATIPLL 164 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHH---HHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------CCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH---HhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--H-HHHHHH
Confidence 444444445689999999999999852 1100 0134678889999999999999999999998765 2 233433
Q ss_pred HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHh
Q 000194 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV 718 (1880)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~ 718 (1880)
.+ .+ .+ +++.+|..|++.|+.+... -+.+++.++..+.++ ++.++..++.+++.+..
T Consensus 165 ~~-------~l-~d-~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~-----~~~vR~~A~~aL~~~~~- 221 (280)
T 1oyz_A 165 IN-------LL-KD-PNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDK-----NEEVRIEAIIGLSYRKD- 221 (280)
T ss_dssp HH-------HH-TC-SSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHTTC-
T ss_pred HH-------HH-cC-CCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhCC-
Confidence 22 22 33 5788999999999887311 245677788888764 78899998888887641
Q ss_pred cCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 719 GGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 719 ~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
+..+|.++..+.|. ++|..|+.+||.+- . +..++.|...+++..+..++..++..+
T Consensus 222 ---------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~----~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 222 ---------KRVLSVLCDELKKN---TVYDDIIEAAGELG----D--------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ---------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC----C--------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ---------HhhHHHHHHHhcCc---cHHHHHHHHHHhcC----c--------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 35678888888764 38999999999862 1 357788888887666677887777766
Q ss_pred H
Q 000194 799 G 799 (1880)
Q Consensus 799 g 799 (1880)
+
T Consensus 278 ~ 278 (280)
T 1oyz_A 278 K 278 (280)
T ss_dssp T
T ss_pred h
Confidence 4
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.71 E-value=4.8e-07 Score=119.79 Aligned_cols=306 Identities=11% Similarity=0.192 Sum_probs=208.1
Q ss_pred CHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000194 22 SLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
+...+..+++.+.... .+.+.|+..+..++.......... .+ +...+.+.+..+... .+|+.++..|....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~ 83 (986)
T 2iw3_A 12 SIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVP--EH----FFGELAKGIKDKKTA--ANAMQAVAHIANQS 83 (986)
T ss_dssp HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC--HH----HHHHHHHHHTSHHHH--HHHHHHHHHHTCTT
T ss_pred hHHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccccc--hh----HHHHHHHHHhccCCH--HHHHHHHHHHHHhc
Confidence 3455667788876533 344557888888774321111111 12 333444455443222 89999999998665
Q ss_pred cCcchhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHH
Q 000194 101 LGENASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILK 178 (1880)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~ 178 (1880)
+.. +..-.-+.+.|..++.. +.+..|++.|..++..++.. ..++-+...++.++++|.....|..+.+|+.++.
T Consensus 84 ~~~-~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 84 NLS-PSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNA---VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFS 159 (986)
T ss_dssp TCC-TTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCC-CCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 322 22222222333333332 44578888888899888886 4455567788889999987778999999999999
Q ss_pred HHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHH
Q 000194 179 EMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIH 258 (1880)
Q Consensus 179 ~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 258 (1880)
.+++.+|..+.-++++++|.+-.++.|.+++|..+|..++..+...+.+++. ..++|.++..+.+|+ + .-
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-------~~~~~~~~~~~~~p~--~-~~ 229 (986)
T 2iw3_A 160 AMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-------ERFIPSLIQCIADPT--E-VP 229 (986)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-------GGGHHHHHHHHHCTT--H-HH
T ss_pred HHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-------hhhHHHHHHHhcChh--h-hH
Confidence 9999999999999999999999999999999999999999999998887764 356677777777763 2 33
Q ss_pred HHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh-hhHHHHHHHHHHHHHHHhhcC---
Q 000194 259 GSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR-DRFVTNYLKICMNHILTVLRI--- 334 (1880)
Q Consensus 259 ~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~-~~f~~~yl~~~~~~Ll~~L~~--- 334 (1880)
.++..|+..-. -.+.-.|-+.=+++.+.+.++.++..+++.++.++..+++.-. ..-+..|++.++|.+......
T Consensus 230 ~~~~~l~~~tf-v~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 230 ETVHLLGATTF-VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD 308 (986)
T ss_dssp HHHHHHTTCCC-CSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCS
T ss_pred HHHHHhhcCee-EeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCC
Confidence 33333322110 0122335666677788888888888888888888999887432 223556899999999887654
Q ss_pred CCCcchHHHHHHHHHh
Q 000194 335 PAERDSGFIALGEMAG 350 (1880)
Q Consensus 335 ~~~r~~a~~alg~la~ 350 (1880)
|..|..|-.|+..+-.
T Consensus 309 pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 309 PEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3348777777666643
No 57
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.69 E-value=2.3e-06 Score=110.44 Aligned_cols=316 Identities=12% Similarity=0.073 Sum_probs=199.6
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
+.+.+.++|++...+..|+.++..|+.......-..+.+ ..+.|..++...+++++...|+++|+.|+.........+
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v 158 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 158 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344566789999999999999999876642111112221 234555555445568999999999999987421112223
Q ss_pred HHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh-chHHHHHHHHHHhcCCchh-----HHHHHHHHHHHHH
Q 000194 150 VEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV-HVAEFVDAIWVALRDPTLA-----VRERAVEALRACL 222 (1880)
Q Consensus 150 v~~-~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~-~l~~i~~~i~~~l~D~~~~-----VR~aA~~al~~~~ 222 (1880)
++. .++.++..|. +.+...|..|+.+|+.|+...|..=.. .-...++.++..|.+++.. +...+..++..+.
T Consensus 159 v~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 159 VDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 332 4566666664 445567888999999999765542110 1123567777888766532 3444555555443
Q ss_pred HHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHH
Q 000194 223 RVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSI 301 (1880)
Q Consensus 223 ~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~ 301 (1880)
. .............++|.+...+.+++ .+++..++.+|..+.....+....-. ..+++.++.++.+.+..|+..+
T Consensus 238 ~---~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 238 R---NKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp C---CCTTCCCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred h---cccchhhHHHHhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 2 12222222345677888888777764 68888888899888875543222211 2356677888899999999999
Q ss_pred HHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh-hHHHHHHHHhhcCCCCCC
Q 000194 302 TSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRRGKP 378 (1880)
Q Consensus 302 ~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~l~~~~~~~ 378 (1880)
+.+++.++.........-.-...++.|...|..++ .|..|+.+|++++........... ..+++.+...+.....+.
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence 99999998765543211111356777788887655 367899999999876554322222 246667777776554444
Q ss_pred CchHHHHHHHHHHH
Q 000194 379 SLEALACVGNIARA 392 (1880)
Q Consensus 379 ~~~a~~~l~~la~~ 392 (1880)
+..+..+++.++..
T Consensus 394 ~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 394 QKAAAWAITNYTSG 407 (529)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC
Confidence 55788888888764
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.69 E-value=5.3e-07 Score=100.04 Aligned_cols=192 Identities=21% Similarity=0.226 Sum_probs=139.4
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCC
Q 000194 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1880)
Q Consensus 494 ~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1880)
+.++.+.+.....++.++.++++.+|..|+.+++.+-.. ..+. .|+. .+.|+
T Consensus 6 ~~~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-----------------------~~~~----~L~~-~l~~~ 57 (201)
T 3ltj_A 6 HHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------------------RAVE----PLIK-ALKDE 57 (201)
T ss_dssp -CCCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----------------------GGHH----HHHH-HTTCS
T ss_pred ccccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-----------------------hHHH----HHHH-HHcCC
Confidence 334455566677788899999999999999888764310 1122 2332 35799
Q ss_pred ChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCC
Q 000194 574 DVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS 653 (1880)
Q Consensus 574 ~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~ 653 (1880)
++.+|..++.+|.. +..++.++.|...++|+++.||..|+..|+.+... ...|.+.+ .+ .+
T Consensus 58 ~~~vr~~a~~~L~~-------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~~L~~-------~l-~d- 118 (201)
T 3ltj_A 58 DAWVRRAAADALGQ-------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLIK-------AL-KD- 118 (201)
T ss_dssp SHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH-------HT-TC-
T ss_pred CHHHHHHHHHHHHh-------hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHHH-------HH-cC-
Confidence 99999999999852 22346788899999999999999999999997642 12232222 22 34
Q ss_pred CChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHH
Q 000194 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL 733 (1880)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~ 733 (1880)
+++.+|..|++.|+.+.. +..++.+...+.++ ++.++..++.+++.+.. +..++.
T Consensus 119 ~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~A~~aL~~~~~----------~~~~~~ 173 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE-----DGWVRQSAADALGEIGG----------ERVRAA 173 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCS----------HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc----------hhHHHH
Confidence 688999999999998842 23455667777764 78899999999888721 467888
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 734 IVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 734 l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
+...+.|. +..+|..|..+|+.+-
T Consensus 174 L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 174 MEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 88888876 5789999999999863
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.55 E-value=9.3e-07 Score=117.08 Aligned_cols=278 Identities=10% Similarity=0.099 Sum_probs=197.6
Q ss_pred hHHHHHHHHHHHHHhhh-CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC--ccchhchHHHHHHHHH
Q 000194 125 REILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS--TVFNVHVAEFVDAIWV 201 (1880)
Q Consensus 125 ~~v~~~aa~~l~~L~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p--~~l~~~l~~i~~~i~~ 201 (1880)
..-++.|+..+..+... ++..... ...+..+...+. +++.. .+|+.++..|++..+ .-+.||+-.++|.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 102 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIK-DKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICT 102 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHT-SHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHh-ccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 34446666666666553 2111111 122333333332 33333 899999999997653 3568999999999999
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH
Q 000194 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE 281 (1880)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~ 281 (1880)
++.|....||.||..|+.++...+. . ..+..++|.+..+|.+...|..+.||+.+++.|.+..++.+.-++.+
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~-~------~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVN-P------VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSC-G------GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCC-H------HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 9999999999999999998877654 1 22477888888888766579999999999999999778889999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhh
Q 000194 282 VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLP 361 (1880)
Q Consensus 282 i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v~~~~~p~l~ 361 (1880)
+++.+-...-+..+.|++++..++..++......= +.+.+|.|..++.++++-..+...|+.. ..|..-=.|-+.
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d----~~~~~~~~~~~~~~p~~~~~~~~~l~~~-tfv~~v~~~~l~ 250 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD----IERFIPSLIQCIADPTEVPETVHLLGAT-TFVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT----TGGGHHHHHHHHHCTTHHHHHHHHHTTC-CCCSCCCHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc----hhhhHHHHHHHhcChhhhHHHHHHhhcC-eeEeeecchhHH
Confidence 99999999999999999999999999887544221 2445778888888886544444444441 112221136666
Q ss_pred HHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhCC--CchHHHHHHHHHHHhc--C-CCHHHHH
Q 000194 362 TITSHLREAIAPRRGKPSLEALACVGNIARAMGP--VMEPHVRGLLDIMFSA--G-LSTTLVD 419 (1880)
Q Consensus 362 ~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~~g~--~~~~~l~~ll~~l~~~--~-ls~~l~~ 419 (1880)
-+++.+..+|..........+...+..+++-+.. +..||++.++|.+-.. + ..|+.++
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~ 313 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEARE 313 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHH
Confidence 6778888888653222224677888999988875 6889999999998753 2 4566665
No 60
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.52 E-value=2e-06 Score=99.17 Aligned_cols=237 Identities=14% Similarity=0.065 Sum_probs=163.1
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
+.+.+++++++...|..|+.++..+..... +....+. ...+.|..++. +.|.+++..|+++|+.|+.........+
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 345677888888899999999999976542 1111111 24566777775 5689999999999999987521112222
Q ss_pred HH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc-hHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 150 VE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH-VAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 150 v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~-l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
++ ..++.+++.+. +.++..|..|+.+|+.++.+.+..-... -...++.++..++++++.+|..|+.+|+.+...
T Consensus 83 ~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~--- 158 (252)
T 4hxt_A 83 VDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--- 158 (252)
T ss_dssp HHTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---
Confidence 22 24666666665 3556788999999999997655432211 135788899999999999999999999887532
Q ss_pred hchhhHHH-HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 228 RETRWRVQ-WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 228 r~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
....... .-...++.+...+.+++ .+++..++.+|+.+.....+....-. ..+++.++..+++.++.+|+.++.++
T Consensus 159 -~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 159 -PDEAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHCcCHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 1111111 11346777777777664 68899999999998874433222221 23667888888899999999999999
Q ss_pred HhHhhhChhhH
Q 000194 306 PRIAHFLRDRF 316 (1880)
Q Consensus 306 ~~la~~~~~~f 316 (1880)
..++...+..+
T Consensus 237 ~~l~~~~~~~~ 247 (252)
T 4hxt_A 237 ENIKSGGWLEH 247 (252)
T ss_dssp HHHHHTCBCCC
T ss_pred HHHHcCCCccc
Confidence 99998776544
No 61
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.50 E-value=3.2e-06 Score=97.43 Aligned_cols=240 Identities=14% Similarity=0.049 Sum_probs=164.4
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhh
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW 232 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~ 232 (1880)
++.+++.|+++. ...|..|+.+|+.++...+......+ ..+++.++..|.++++.||..|+.+|+.+... ....
T Consensus 4 i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~ 78 (252)
T 4hxt_A 4 VEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG----PDEA 78 (252)
T ss_dssp HHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----CHHH
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC----ChHH
Confidence 556667776444 67788899999999987763322222 25788999999999999999999999876532 1112
Q ss_pred HHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 233 RVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 233 ~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
+.... ...++.+...+.++ +.+++..++.+|+.+.....+.-..-. ...++.++..+++.++.+|..++.++..++.
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 22222 23566677777765 478899999999998854332211111 2367788888899999999999999999997
Q ss_pred hChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh-hHHHHHHHHhhcCCCCCCCchHHHHHH
Q 000194 311 FLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRRGKPSLEALACVG 387 (1880)
Q Consensus 311 ~~~~~f~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~l~~~~~~~~~~a~~~l~ 387 (1880)
..+.....-.-...++.|...+.+++ .|..|+.+|+.++..-+....... ..+++.+.+.+.+.+.+.+..++.+++
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 66543211111468888888887654 478899999999874443222222 347778888886654445578999999
Q ss_pred HHHHHhCCCchH
Q 000194 388 NIARAMGPVMEP 399 (1880)
Q Consensus 388 ~la~~~g~~~~~ 399 (1880)
.++...+....+
T Consensus 238 ~l~~~~~~~~~~ 249 (252)
T 4hxt_A 238 NIKSGGWLEHHH 249 (252)
T ss_dssp HHHHTCBCCC--
T ss_pred HHHcCCCccccc
Confidence 999877665544
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.48 E-value=4.1e-06 Score=92.83 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=133.3
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.|+++.+|..++.+|.. +..++.++.|...++|+++.||..|+..|+.+... ...|.+.+ .
T Consensus 22 ~L~~~~~~vr~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---~~~~~L~~-------~ 84 (201)
T 3ltj_A 22 NLQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE---RAVEPLIK-------A 84 (201)
T ss_dssp HTTCSCHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH-------H
T ss_pred HhcCCCHHHHHHHHHHHHh-------cCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH---HHHHHHHH-------H
Confidence 4689999999999999852 12235788899999999999999999999988642 22233322 2
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1880)
+ .+ +++..|..|++.|+.+.. +..++.++..+.++ ++.|+..++.+++.+.. +
T Consensus 85 l-~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~ 137 (201)
T 3ltj_A 85 L-KD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD----------E 137 (201)
T ss_dssp T-TC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHTC----------G
T ss_pred H-cC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCC----------H
Confidence 2 34 678899999999988732 12345566667654 78899999999888742 3
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 729 ~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
..+|.+...+.|. +..+|..|+.+|+.+ | .+..++.|..+++++ ++.+|.++.++|+.+.
T Consensus 138 ~~~~~L~~~l~d~-~~~vr~~A~~aL~~~----~--------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 RAVEPLIKALKDE-DGWVRQSAADALGEI----G--------GERVRAAMEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHH----C--------SHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHh----C--------chhHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 5677888888876 678999999999987 2 156788888888654 7899999999998875
No 63
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.46 E-value=3.1e-06 Score=94.60 Aligned_cols=176 Identities=19% Similarity=0.220 Sum_probs=132.1
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.|+++.+|..++..|.. +..++.++.|...++|++..||..|+..|+.+.. + ...|.+.+ .
T Consensus 27 ~L~~~~~~vR~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~-~~~~~L~~-------~ 89 (211)
T 3ltm_A 27 NLQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGD--E-RAVEPLIK-------A 89 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G-GGHHHHHH-------H
T ss_pred HHcCCCHHHHHHHHHHHHH-------hCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H-HHHHHHHH-------H
Confidence 3579999999999999852 1224678899999999999999999999999864 2 22333322 2
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1880)
+ .+ +++..|..|+..|+.+.. +..++.++..+.++ ++.++..++.+++.+.. +
T Consensus 90 l-~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~ 142 (211)
T 3ltm_A 90 L-KD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD----------E 142 (211)
T ss_dssp T-TC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC----------G
T ss_pred H-cC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCC----------H
Confidence 2 34 578899999999988742 12345566667664 78899999999887732 3
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 729 ~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+.+|.+...+.|. +..+|..|+.+|+.+- .|..++.|..+++++ ++.||.++..+|+.++
T Consensus 143 ~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 143 RAVEPLIKALKDE-DGWVRQSAADALGEIG------------GERVRAAMEKLAETG-TGFARKVAVNYLETHK 202 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHC------------SHHHHHHHHHHHHHC-CHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------------chhHHHHHHHHHhCC-CHHHHHHHHHHHHhcC
Confidence 5678888888776 5789999999999872 157788888888754 7899999999998876
No 64
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.43 E-value=2.2e-06 Score=98.86 Aligned_cols=230 Identities=11% Similarity=0.068 Sum_probs=156.4
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~ 189 (1880)
|..+...+ . ++|.++...|++++.+++.........+++ ..++.+++.|+++. ...|..|+.+|+.++.+.+..-.
T Consensus 14 ~~~~~~~L-~-s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 14 LPQMTQQL-N-SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp HHHHHHHH-H-SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHH-c-CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 33444444 3 568999999999998765531111122232 25677777776544 67889999999999986554322
Q ss_pred hch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhH-HHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHH
Q 000194 190 VHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR-VQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGE 266 (1880)
Q Consensus 190 ~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~-~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ 266 (1880)
..+ ...++.+...|+++++.||+.|+.+|+.+... . ..+ .... ...++.+...+.++ +.+++..++.+|+.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~-~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----G-NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSN 164 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS----C-HHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC----C-chHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 222 24789999999999999999999999887432 1 112 2222 34677788878776 47889999999999
Q ss_pred HHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHH
Q 000194 267 LLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA--ERDSGF 342 (1880)
Q Consensus 267 ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~--~r~~a~ 342 (1880)
+.....+....-. ..+++.++..+++.++.+|..++.++..++...+.... ... ...++.|...+++.+ .|..|.
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ-AVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHH-HHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 8875433222111 23567788888899999999999999999976654322 122 347788888887654 367888
Q ss_pred HHHHHHHh
Q 000194 343 IALGEMAG 350 (1880)
Q Consensus 343 ~alg~la~ 350 (1880)
.+|++++.
T Consensus 244 ~~L~~l~~ 251 (252)
T 4db8_A 244 EALEKLQS 251 (252)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 89888763
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.43 E-value=4.8e-06 Score=93.07 Aligned_cols=185 Identities=21% Similarity=0.230 Sum_probs=130.9
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
+.+...+.++++.+|..|+..++.+-.. ..+. .|+. .+.|+++.||..++.+
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~-----------------------~~~~----~L~~-~l~~~~~~vr~~a~~a 73 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDE-----------------------RAVE----PLIK-ALKDEDAWVRRAAADA 73 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------------------GGHH----HHHH-HTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCc-----------------------cHHH----HHHH-HHcCCCHHHHHHHHHH
Confidence 3445677889999999999888765311 1122 2222 4579999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
|+. +..++.++.|...++|+++.||..|+..|+.+... ...|.+.+ +..+ +++.+|..|+.
T Consensus 74 L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~---~~~~~L~~--------~l~d-~~~~vr~~a~~ 134 (211)
T 3ltm_A 74 LGQ-------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLIK--------ALKD-EDWFVRIAAAF 134 (211)
T ss_dssp HHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH--------HTTC-SSHHHHHHHHH
T ss_pred HHh-------hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHHH--------HHhC-CCHHHHHHHHH
Confidence 852 12346788899999999999999999999998642 12233222 2234 68899999999
Q ss_pred HHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCch
Q 000194 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~ 744 (1880)
.|+.+.. +..++.|.+.+.++ ++.|+..++.+++.+.. +..++.+...+.|. +.
T Consensus 135 aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~ 188 (211)
T 3ltm_A 135 ALGEIGD----------ERAVEPLIKALKDE-----DGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TG 188 (211)
T ss_dssp HHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CH
T ss_pred HHHHcCC----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CH
Confidence 9998832 12455667777664 78899999999887732 56788888888876 57
Q ss_pred hhHHHHHHHHHHHHhhcC
Q 000194 745 TKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 745 ~~r~~Al~~Lg~l~~~~~ 762 (1880)
.+|..|..+|+.+....+
T Consensus 189 ~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 189 FARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 899999999998765543
No 66
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.41 E-value=5.2e-07 Score=106.29 Aligned_cols=227 Identities=14% Similarity=0.098 Sum_probs=141.2
Q ss_pred HHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000194 25 ALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1880)
Q Consensus 25 ~~~~l~~~l~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~ 103 (1880)
....++.+|-++. +.+.|||.+|+.++........ +. .-.+. |...|+-.++|+|.+-++-++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG-----R~---------~~~N~-DLAvRLLCVLALDRFGDYVSDq 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD-----IQ---------IRVDS-KLFSKIYEILVTDKFNDFVDDR 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC---------CC---------CCCCT-THHHHHHHHHHHBCCBBCSSSS
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc-----ee---------ccccH-HHHHHHHHHHHhccccccccCe
Confidence 4566677777775 4555777777777644322111 10 11222 6666666777777665553211
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh
Q 000194 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~ 183 (1880)
--..||+.+|++||.+ .+-... -+. +..++..+ ....|..||+|++.|+++
T Consensus 240 -------------------VVAPVRETaAQtLGaL-~hLp~e-~~I----L~qLV~~l-~~~~WEVRHGGLLGLKYL--- 290 (800)
T 3oc3_A 240 -------------------TVAPVRDAAAYLLSRI-YPLIGP-NDI----IEQLVGFL-DSGDWQVQFSGLIALGYL--- 290 (800)
T ss_dssp -------------------CBCHHHHHHHHHHHHH-TTTSCS-CCH----HHHHTTGG-GCSCHHHHHHHHHHHHHT---
T ss_pred -------------------eeeehHHHHHHHHHHH-HhCChh-HHH----HHHHHhhc-CCCCeeehhhhHHHHHHH---
Confidence 0147999999999999 652211 122 33333322 456799999999999999
Q ss_pred cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCCh-hHHHHHHH
Q 000194 184 ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV-HSIHGSLL 262 (1880)
Q Consensus 184 ~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~-~~~~~al~ 262 (1880)
-+.+. .++.+++.++.+|+|++..||..|+.+|.-+. .+ +.+..++..+.+.|.+-+|- ....+.+.
T Consensus 291 -~DLL~-~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA------~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMd 358 (800)
T 3oc3_A 291 -KEFVE-DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP------IT----DSLDLVLEKCWKNIESEELISVSKTSNLS 358 (800)
T ss_dssp -GGGCC-CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC------CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHH
T ss_pred -HHHHH-HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc------ch----hhHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 22222 28999999999999999999999999886554 11 12444555555444433221 22334444
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000194 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1880)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la 309 (1880)
+|..|......... .+.+++.+..++.|.-..||++++.++-++.
T Consensus 359 LLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 359 LLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 66776664321110 1256777888899999999999999887655
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.41 E-value=2.1e-06 Score=99.14 Aligned_cols=231 Identities=16% Similarity=0.135 Sum_probs=156.9
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
+.+.+++++++...|..|+.++..++... .+....+ ....+.|..++. +.+.+++..|+++|+.|+.........+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34556788899999999999997765542 1111111 123456777775 5679999999999999987421122223
Q ss_pred HHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 150 VEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 150 v~~-~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
++. .++.+++.|.+ .++..|..|+.+|+.++.+.+.... -.-...++.+...|.++++.||..|+.+|+.+...
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--- 168 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--- 168 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC---
Confidence 322 56677777765 4567889999999999887654312 22235889999999999999999999999887531
Q ss_pred hchhhHHHH-HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 228 RETRWRVQW-YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 228 r~~~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
........ -..+++.+...+.++ +.+++..++.+|+.+.....+......+ ..++.++..+.+.++.+|+.++.+|
T Consensus 169 -~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 169 -GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp -CHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred -ChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 11111111 134567777777776 4788999999999988644332222222 2667778888899999999999999
Q ss_pred HhHhh
Q 000194 306 PRIAH 310 (1880)
Q Consensus 306 ~~la~ 310 (1880)
..++.
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 88864
No 68
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.39 E-value=0.0057 Score=86.10 Aligned_cols=230 Identities=7% Similarity=0.014 Sum_probs=140.4
Q ss_pred hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhh
Q 000194 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAEN 183 (1880)
Q Consensus 105 ~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~R~aA~~~l~~la~~ 183 (1880)
..+..++...|...+.+..|.++++.|-+.|..+-..+. . ...+...|. ...+...|+.|...|+.....
T Consensus 7 ~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~-----~----~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~ 77 (1204)
T 3a6p_A 7 NALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP-----I----CVPCGLRLAEKTQVAIVRHFGLQILEHVVKF 77 (1204)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT-----T----HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch-----H----HHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 445666777777777655678889999999988866532 1 122222232 344567888888888876643
Q ss_pred -cCccchhchHHHHHHHHHHhc-------CCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChh
Q 000194 184 -ASTVFNVHVAEFVDAIWVALR-------DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVH 255 (1880)
Q Consensus 184 -~p~~l~~~l~~i~~~i~~~l~-------D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 255 (1880)
+...=...-..|-..++..+. ++.+.||...+.++..++..- .+ .+| +.+++.+...+.++ ..
T Consensus 78 ~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d---~p---~~W-p~ll~~L~~~~~~~--~~ 148 (1204)
T 3a6p_A 78 RWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE---WP---QHW-PDMLIELDTLSKQG--ET 148 (1204)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH---ST---TTC-TTHHHHHHHHHHTC--HH
T ss_pred hcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh---Cc---ccc-hHHHHHHHHHhcCC--HH
Confidence 322212233344444555543 245889998888887765431 11 123 34555555544442 35
Q ss_pred HHHHHHHHHHHHHHcch--------------hhhHHHHHHHHHHHHHHhhc-------------------chhHHHHHHH
Q 000194 256 SIHGSLLAVGELLRNTG--------------EFMMSRYREVAEIVLRYLEH-------------------RDRLVRLSIT 302 (1880)
Q Consensus 256 ~~~~al~~l~~ll~~~~--------------~~~~~~~~~i~~~ll~~~~~-------------------~~~~Vr~~~~ 302 (1880)
.+++++.+|..|.+-.. +.+..++.+++..+...+++ .+..++.+++
T Consensus 149 ~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL 228 (1204)
T 3a6p_A 149 QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAAL 228 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHH
Confidence 67888888888865210 12334444555555444432 2345777888
Q ss_pred HHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhc
Q 000194 303 SLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGAL 352 (1880)
Q Consensus 303 ~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~alg~la~~v 352 (1880)
.++.....|.+-.+.-..-+.+++.+...+..++.|..|++||..++..-
T Consensus 229 ~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 229 NTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 88887777777544321112478888888887778999999999998643
No 69
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.28 E-value=0.00042 Score=97.58 Aligned_cols=485 Identities=11% Similarity=0.083 Sum_probs=249.9
Q ss_pred CChhHHHHHHHhccCCCCcchhhccHhhHH-HHHHHh-CCCCHhHHHHHHHHHHhhhcCC----cccccHHHHHHHHHHH
Q 000194 573 ADVTVRHSIFSSLYGNRGFDDFLAQADCLS-AIFAAL-NDEDFDVREYAISVAGRLSEKN----PAYVLPALRRHLIQLL 646 (1880)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~-~L~~~l-~D~~~~VR~~a~~~l~~l~~~~----p~~v~p~l~~~l~~~l 646 (1880)
.+.++|..+-+.|. .|. .+++... ...... .+.+..||..|..+|....... |......+|..+++.+
T Consensus 25 ~~~~~r~~Ae~~L~---~~~---~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l 98 (1204)
T 3a6p_A 25 STQRYRLEALKFCE---EFK---EKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELI 98 (1204)
T ss_dssp CCHHHHHHHHHHHH---HHH---HHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH---HHH---hCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 37778988777663 111 1122222 222333 4557899999999999877542 3334456676666665
Q ss_pred HHHhcC--CCChHhHHHHHHHHHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc---C
Q 000194 647 TYLEQS--SADNKCREESAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG---G 720 (1880)
Q Consensus 647 ~~l~~~--~~~~~~r~~a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~---g 720 (1880)
...... ......|...+.++..|++.. ++.. +.+++.++..+.. ++.....++.++..+.+-. .
T Consensus 99 ~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~------~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 99 ANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ------GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHHcccc
Confidence 433111 024677888899999999773 4333 3455555555543 3344556666666665421 0
Q ss_pred -----------CchhhhHHhHHHHHHHHHhcC------------------CchhhHHHHHHHHHHHHhhcCcccccCCcc
Q 000194 721 -----------FGMRQYISELMPLIVEALLDG------------------AAVTKREVAVSTLGQVVQSTGYVITPYNEY 771 (1880)
Q Consensus 721 -----------~~~~~~~~~l~p~l~~~l~d~------------------~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~ 771 (1880)
..+...++++++.+...+.+. .+...+..|+.+++..+........ ....
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i-~~~~ 247 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHI-TAEN 247 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHH-HTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHH-Hhcc
Confidence 124455667777777777541 1122445566666654443221100 0111
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCc
Q 000194 772 PQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSE 851 (1880)
Q Consensus 772 p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 851 (1880)
+.+++.++..+.+ +.+|.+|+.||..+....... ... ..++
T Consensus 248 ~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~-~~~----------------------------~~li------- 288 (1204)
T 3a6p_A 248 CKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKL-EDR----------------------------KPLM------- 288 (1204)
T ss_dssp SHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCH-HHH----------------------------GGGG-------
T ss_pred chHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCCh-hhH----------------------------HHHH-------
Confidence 3588888877653 478999999998875421100 000 0000
Q ss_pred ccchHHHHHHHHHHhc--CC-ChhhhHHHHHHHHHHHHHHhC------------CCCCCCcchhhHHHHHHHhcCCcchh
Q 000194 852 DYYSTVAINSLMRILR--DP-SLASYHQKVVGSLMFIFKSMG------------LGCVPYLPKVLPDLFHTVRTCDDYLK 916 (1880)
Q Consensus 852 ~~~~~~vi~~Ll~~L~--d~-s~~~~~~~~~~al~~i~~~~~------------~~~~~~l~~iip~ll~~l~~~~~~~~ 916 (1880)
..+....+..++..+. ++ ...+.....+..++.++..+| ....+.+..+++.++.....++..+-
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs 368 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLR 368 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhH
Confidence 0111111222222221 11 101111122333333332221 13457888999999998887654444
Q ss_pred HHHHHHHHHHHHHH----HHhHHHhHHHHHHHHHHhhcCCCCCccccc--------------c-------cchhHHHHHH
Q 000194 917 DYITWKLGTLVSIV----RQHIRKYLQELFSLISELWSSFSLPATNRT--------------Y-------RGLPVLHLVQ 971 (1880)
Q Consensus 917 ~~~~~~l~~lv~~~----~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~--------------~-------~~~~~l~~i~ 971 (1880)
...+.....+++.. .+.+.+|++.+++++...+.+...|+.... . ....+..++.
T Consensus 369 ~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~ 448 (1204)
T 3a6p_A 369 SSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMR 448 (1204)
T ss_dssp HHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 44444444443321 245678999999888443333222221000 0 0001233333
Q ss_pred HHHHHhhhhhhccchhhHHHHHHhcccc-c-c-------------------cCch---hhHHHHHHHHHH-Hhcch-hhh
Q 000194 972 QLCLALNDEFRTHLPVILPCCIQVLSDA-E-R-------------------CNDY---TYVLDILHTLEV-FGGTL-DEH 1025 (1880)
Q Consensus 972 ~l~~~l~~~f~~yl~~l~p~ll~~l~~~-~-~-------------------~~~~---~~~~~il~~l~~-~g~~~-~~~ 1025 (1880)
.++...+...-+|+ .+.+...+.+. + . +... +....++.++.. +.... .++
T Consensus 449 ~i~~v~p~~~l~~v---~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~ 525 (1204)
T 3a6p_A 449 LACRLDPKTSFQMA---GEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREE 525 (1204)
T ss_dssp HHHHHCHHHHHHHH---HHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhcCHHHHHHHH---HHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 34444333332222 23333332210 0 0 0000 111222332221 10101 133
Q ss_pred hh-hhHHHHHHhhc--CCCcHHHHHHHHHHHHhhccccc-ccchhHhHHHHHHHhhCC------------CCHHHHHHHH
Q 000194 1026 MH-LLLPALIRLFK--VDAPVDIRRAAIETLTRLIPRVQ-VTGHISSLVHHLKLVLDG------------KNDELRKDAV 1089 (1880)
Q Consensus 1026 ~~-~ilp~l~~~l~--~~~~~~vr~~ai~~l~~l~~~~~-~~~~~~~ii~~l~~~l~~------------~~~~l~~~al 1089 (1880)
+. .++|.++..+- ....+.+|..++.+++.+..-.. -.++++.++..++..+.. .+.+++..|.
T Consensus 526 l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~ 605 (1204)
T 3a6p_A 526 IPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHAC 605 (1204)
T ss_dssp CCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHH
Confidence 32 35677776642 22356699999999988876532 224777777777766543 1347999999
Q ss_pred HHHHHHHHHhccccccchhHHHHHHHh
Q 000194 1090 DALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1880)
Q Consensus 1090 ~~L~~l~~~~g~~f~~fip~i~~~l~~ 1116 (1880)
.++..|+...+..+.+|++.|...+..
T Consensus 606 ~al~~L~~~~~~~L~p~~~~i~~~~~~ 632 (1204)
T 3a6p_A 606 SSIIKMCRDYPQLVLPNFDMLYNHVKQ 632 (1204)
T ss_dssp HHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988886644
No 70
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.26 E-value=3.6e-06 Score=94.00 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=133.8
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
..+.|...+++++.++|..|+..|+.++..++.........-.++.+..+..+ ++...++.|+++|+.++...+.....
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 46677788899999999999999999998775432222221122333334344 57889999999999998544332211
Q ss_pred ch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH-HhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 680 YI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 680 y~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
.+ ...++.++..+.++ ++.++..++.+++.++....+.....+ ..++|.+++.+.+. +...|..|+++|+.+
T Consensus 92 i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 92 VIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (210)
T ss_dssp HHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 11 13567778888764 788999999999998753332222222 35799999999876 678999999999999
Q ss_pred HhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+......... ..-...++.|.+++++ .+..+|+.++.+|+.+.
T Consensus 166 ~~~~~~~~~~-~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 166 ASGGNEQKQA-VKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HTSCHHHHHH-HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHC
T ss_pred HcCCcHHHHH-HHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence 8753221111 1113577888888875 47899999999998874
No 71
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.23 E-value=0.00018 Score=91.00 Aligned_cols=346 Identities=13% Similarity=0.060 Sum_probs=201.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH--HHHHHHHhhhcCCChhhhhhHHHHH
Q 000194 17 GAGGGSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD--QLYDRISGLLESNDAAENLGALRAI 93 (1880)
Q Consensus 17 ~~~~~~~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~--~l~~~i~~l~~s~~~~~r~~~i~ai 93 (1880)
+.++.....+..+++.|++.+.+.+ .||..|..+.. -..+ ....+- --...+.+++++++...+..|+.||
T Consensus 41 ~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~-----~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL 114 (584)
T 3l6x_A 41 PPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCY-----RNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGAL 114 (584)
T ss_dssp CCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-----TCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHc-----CChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHH
Confidence 3445555568889999988764443 47777766651 1111 111111 1245677889999999999999999
Q ss_pred hHhhccccCcchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc---------
Q 000194 94 DELIDVALGENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--------- 162 (1880)
Q Consensus 94 ~~Li~~~~~~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~--------- 162 (1880)
..|......++...+.+ ..+.|..++....+.++.+.|+.+|..|+.... ....++..-++.+++.+.
T Consensus 115 ~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~-~k~~I~~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 115 KNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGG-GHHHHHHHTHHHHHHHTHHHHHCCC--
T ss_pred HHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch-hhHHHHhccHHHHHHHHhccccccccc
Confidence 99975421122222222 234555666434578999999999999987421 122233333444444330
Q ss_pred --------CCCcchhHHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHHHH
Q 000194 163 --------GDRVEYRRFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALR------DPTLAVRERAVEALRACLRVI 225 (1880)
Q Consensus 163 --------~~~~~~~R~aA~~~l~~la~~~p~---~l~~~l~~i~~~i~~~l~------D~~~~VR~aA~~al~~~~~~i 225 (1880)
...++..+..|.-+|+.|+.+.+. .+.. ...+++.++..++ +++..+.+.|..+|+.+....
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~ 272 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQV 272 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccc
Confidence 112346677888999999865443 2221 1234444444433 466778888888888765432
Q ss_pred hhhchh--------------------hHHH--HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---hhhHHHH-
Q 000194 226 EKRETR--------------------WRVQ--WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---EFMMSRY- 279 (1880)
Q Consensus 226 ~~r~~~--------------------~~~~--~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---~~~~~~~- 279 (1880)
....+. ...+ |....++.++.-|......+++.+|+-+|..|..+.+ ..+...+
T Consensus 273 ~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~ 352 (584)
T 3l6x_A 273 HREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352 (584)
T ss_dssp HHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT
T ss_pred cccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH
Confidence 211000 0001 2233444444444333346788999999988876432 2222222
Q ss_pred -HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh-HHHHHHHHHHHHHHHhhcCCCC----------cchHHHHHHH
Q 000194 280 -REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR-FVTNYLKICMNHILTVLRIPAE----------RDSGFIALGE 347 (1880)
Q Consensus 280 -~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~-f~~~yl~~~~~~Ll~~L~~~~~----------r~~a~~alg~ 347 (1880)
...++.+..++.+.+..|++.++.+|..|+...... .+ -...+|.|...|..... ...|+.+|++
T Consensus 353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~N 429 (584)
T 3l6x_A 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINE 429 (584)
T ss_dssp SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHH
Confidence 345778888899999999999999999999754422 22 25688888888876521 2356666776
Q ss_pred HHhhchhhhhhhh-hHHHHHHHHhhcC
Q 000194 348 MAGALDGELFHYL-PTITSHLREAIAP 373 (1880)
Q Consensus 348 la~~v~~~~~p~l-~~i~~~l~~~l~~ 373 (1880)
++..-........ ...++.+...+..
T Consensus 430 L~a~~~~~~~~I~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 430 VIAENLEAAKKLRETQGIEKLVLINKS 456 (584)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HhcCCHHHHHHHHHCCChHHHHHHHhC
Confidence 6533222211111 2345555555543
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.22 E-value=0.00014 Score=73.30 Aligned_cols=182 Identities=16% Similarity=0.236 Sum_probs=132.0
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1880)
+++..+...|.|+-+.||..|+.++..+++..|...-|.+++.+ .+ +..+ +....-.+-++.+|.+++--|+.+.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~-vm---~~ks-EaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLF-SL---LKKS-EAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH-HH---HHHC-CSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH-HH---Hhhc-ccCchHHHHHHHHhHHHHhCHHHHH
Confidence 67888999999999999999999999999999988777666533 22 3445 4444445677899999988876654
Q ss_pred CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
+ +++.+....+- .++..+.+..+++++++...+..+ +.+..-+...+.+. +...|.+|+..++.+.
T Consensus 107 ~----vVp~lfanyri-----gd~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltsk-d~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 107 S----MIPVLFANYRI-----GDEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSK-NREDKLTALNFIEAMG 172 (253)
T ss_dssp H----HHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCS-SHHHHHHHHHHHHTCC
T ss_pred h----hHHHHHHHHhc-----CCccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHh
Confidence 3 44455554443 378899999999999998765433 34445555566655 5678889998888776
Q ss_pred hhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCc
Q 000194 759 QSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1880)
Q Consensus 759 ~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp 806 (1880)
.+...-+.|| ++.|+.+|. +.+.-||-.++.+++-+....|
T Consensus 173 en~~~yv~Pf------LprL~aLL~-D~deiVRaSaVEtL~~lA~~np 213 (253)
T 2db0_A 173 ENSFKYVNPF------LPRIINLLH-DGDEIVRASAVEALVHLATLND 213 (253)
T ss_dssp TTTHHHHGGG------HHHHHGGGG-CSSHHHHHHHHHHHHHHHTSCH
T ss_pred ccCccccCcc------hHHHHHHHc-CcchhhhHHHHHHHHHHHHcCH
Confidence 6554334554 567777775 4478999999999998875444
No 73
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.21 E-value=0.029 Score=72.10 Aligned_cols=225 Identities=12% Similarity=0.144 Sum_probs=132.2
Q ss_pred cCCChhHHHHHHHhcc---CCCCcchhhccHhhHHHHHHHhCCCCHh---HHHHHHHHHHhhh-cCCcccccHHH--HHH
Q 000194 571 ADADVTVRHSIFSSLY---GNRGFDDFLAQADCLSAIFAALNDEDFD---VREYAISVAGRLS-EKNPAYVLPAL--RRH 641 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~---~~~~fd~~L~~~~~l~~L~~~l~D~~~~---VR~~a~~~l~~l~-~~~p~~v~p~l--~~~ 641 (1880)
..+++.+|..+..+|. .+...-..+.+...++.|+..+.+.... +|..|..+|.++. ..+|..+.+.. ...
T Consensus 467 ~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~a 546 (778)
T 3opb_A 467 HNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA 546 (778)
T ss_dssp GGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTH
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccc
Confidence 4456666665555442 1222122233344577777777665433 8999999999987 44554432100 022
Q ss_pred HHHHHHHHhcCCCC------------hHhHHHHHHHHHHHHHhCc---ccccC-chH--HHHHHHHHHhccCCCCCCChh
Q 000194 642 LIQLLTYLEQSSAD------------NKCREESAKLLGCLIRNCE---RLIRP-YIA--PIHKALVARLLEGTGINANNG 703 (1880)
Q Consensus 642 l~~~l~~l~~~~~~------------~~~r~~a~~~L~~l~~~~~---~~~~p-y~~--~il~~ll~~l~~~~~~~~~~~ 703 (1880)
+..++.-|..+++. ...+-+|+.+|..++.... +.++. .+. ..++.+...+.++ +..
T Consensus 547 I~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-----n~~ 621 (778)
T 3opb_A 547 IPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-----NVP 621 (778)
T ss_dssp HHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-----SHH
T ss_pred hHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-----CHH
Confidence 22233222211011 1236689999999998652 22221 222 3556666666653 778
Q ss_pred HHHHHHHHHHHHHHhcCCch-hhhH----Hh---HHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHH
Q 000194 704 IISGVLVTVGDLARVGGFGM-RQYI----SE---LMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLL 775 (1880)
Q Consensus 704 v~~~~~~~l~~La~~~g~~~-~~~~----~~---l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll 775 (1880)
++.+++.++..|+... +.+ ..++ +. =++.++..+. ..+.+.|.+|.++|+.+......+..-....+..+
T Consensus 622 VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~-s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi 699 (778)
T 3opb_A 622 LQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQ-LSDVESQRAVAAIFANIATTIPLIAKELLTKKELI 699 (778)
T ss_dssp HHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccH
Confidence 9999999999998632 222 1232 11 2777887775 45788999999999998654443322223345788
Q ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHc
Q 000194 776 GLLLKMLNGE-LVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 776 ~~Ll~~L~~~-~~~~vr~~~l~~lg~lg 802 (1880)
+.++++++.. .+.++|..++.++.-+.
T Consensus 700 ~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 700 ENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 8888888752 47888888888877665
No 74
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.20 E-value=1.5e-05 Score=88.97 Aligned_cols=193 Identities=14% Similarity=0.084 Sum_probs=134.5
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000194 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1880)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~ 189 (1880)
..++|..++. +.|.+++..|+++|+.|+.........+++ ..++.+++.|.++ ++..|..|+.+|+.++.+.+..-.
T Consensus 13 ~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 13 ELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3467778886 679999999999999998642212222222 2566777777644 567889999999999976554322
Q ss_pred hch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000194 190 VHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1880)
Q Consensus 190 ~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~~l~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1880)
..+ ...++.++..|.++++.||..|+.+|+.+... ........ -...++.+...+.++ +.+++..++.+|..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 111 24778899999999999999999999987531 11111111 234677777777766 468899999999999
Q ss_pred HHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 268 LRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 268 l~~~~~~~~~~~-~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
.....+....-. ...++.+...+.+.++.||+.++.+|..++.
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 875433221111 1366778888899999999999999998874
No 75
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.18 E-value=0.00014 Score=91.43 Aligned_cols=399 Identities=13% Similarity=0.099 Sum_probs=203.5
Q ss_pred HHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccC
Q 000194 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
++.+...|+.++.++|..|...|+.++..++..-..... ..+..++. +..+ ++...+..|+++|..|+...++.-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVD-LLRS-PNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHH-HTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHH-HHcC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 566677777778899999999999999776532111111 11222333 3344 57888999999999998643321111
Q ss_pred ch-HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhh-hHHhHHHHHHHHHh--------cC-------C
Q 000194 680 YI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQ-YISELMPLIVEALL--------DG-------A 742 (1880)
Q Consensus 680 y~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~-~~~~l~p~l~~~l~--------d~-------~ 742 (1880)
.+ ...++.|+..+... .++.++..++.+|+.|+.. +.... .+...+|.+++.+. +. .
T Consensus 82 i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 11 13466777778732 2788999999999999865 33333 33478999999983 11 1
Q ss_pred chhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHcc----cCccchhhcc
Q 000194 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG-----ELVWSTRREVLKVLGIMGA----LDPHAHKRNQ 813 (1880)
Q Consensus 743 ~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~-----~~~~~vr~~~l~~lg~lga----ldp~~~~~~~ 813 (1880)
+.+....|+++|..++.. .....-....+..++.|+.+|++ ..+.++...++.++..+.. ..|.......
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 223344999999999865 21111111122466666666653 1223455555555544321 0010000000
Q ss_pred c-cCCCcc--cc---cccCCCCCCCCCCCcc-cccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Q 000194 814 Q-LSGSHG--EV---TRAASDSGQHIQPMDE-FPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIF 886 (1880)
Q Consensus 814 ~-~~~~~~--~~---~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~ 886 (1880)
. ...... +. ......... ....+. +... .......+..+..-+++.|+..|++.+.......++.|+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~ 312 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMM-NNNYDCPLPEE-ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312 (457)
T ss_dssp HTC-----------------------------CCCC-CSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred cccccccccccccchhhccchhhh-hccccCCcccc-ccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhc
Confidence 0 000000 00 000000000 000000 0000 0000111223445677888888876544445556666666665
Q ss_pred HHhCCCCCCCc-------chhhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccc
Q 000194 887 KSMGLGCVPYL-------PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR 959 (1880)
Q Consensus 887 ~~~~~~~~~~l-------~~iip~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~ 959 (1880)
..-+. ..+++ ...+|.++..+++.++.++..+.+.++.+... +
T Consensus 313 ~~~~~-~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~--------------------------- 362 (457)
T 1xm9_A 313 ASKGL-MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P--------------------------- 362 (457)
T ss_dssp TCSSS-HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G---------------------------
T ss_pred cCcCc-chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H---------------------------
Confidence 32111 00111 35678888888888777777777766665420 0
Q ss_pred cccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhccccccc--CchhhHHHHHHHHHHHhcchhhhhh-----hhHHH
Q 000194 960 TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERC--NDYTYVLDILHTLEVFGGTLDEHMH-----LLLPA 1032 (1880)
Q Consensus 960 ~~~~~~~l~~i~~l~~~l~~~f~~yl~~l~p~ll~~l~~~~~~--~~~~~~~~il~~l~~~g~~~~~~~~-----~ilp~ 1032 (1880)
....++. ...+|.+++.|...+.. .+..+...++.++..+...-+++.. -.+|.
T Consensus 363 -----~~~~~i~--------------~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~ 423 (457)
T 1xm9_A 363 -----LLHRVMG--------------NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423 (457)
T ss_dssp -----GGHHHHH--------------HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHH
T ss_pred -----HHHHHHH--------------HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 1111111 12456667777543211 1112333444444433221122222 24677
Q ss_pred HHHhhcCCCcHHHHHHHHHHHHhhccc
Q 000194 1033 LIRLFKVDAPVDIRRAAIETLTRLIPR 1059 (1880)
Q Consensus 1033 l~~~l~~~~~~~vr~~ai~~l~~l~~~ 1059 (1880)
|++++..+.+..+++.|...|..+...
T Consensus 424 L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 424 IINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 777776554677888888888777654
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.17 E-value=0.00011 Score=92.60 Aligned_cols=314 Identities=11% Similarity=0.047 Sum_probs=186.2
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH--HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccC
Q 000194 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM--DQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102 (1880)
Q Consensus 26 ~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~--~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~ 102 (1880)
+..+++.|++.+.+.+ .|+..|+.+.. . .+.....+ ....+.+.+++++++...+..|..++..|.... .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~----~--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~ 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCF----Q--DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-T 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTS----S--CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHc----C--ChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H
Confidence 5678888888865444 48777777651 1 11111111 123556677888999999999999999997541 1
Q ss_pred cchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc--------CC-------C
Q 000194 103 ENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--------GD-------R 165 (1880)
Q Consensus 103 ~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~--------~~-------~ 165 (1880)
+....+.+ ..+.|..++..+.+.++.+.|+++|+.|+.. ......+++..++.+++.|. ++ .
T Consensus 77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 22222221 1356666664355899999999999999976 22333355667777777772 11 1
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHHHhhhch-------
Q 000194 166 VEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIWVALRD------PTLAVRERAVEALRACLRVIEKRET------- 230 (1880)
Q Consensus 166 ~~~~R~aA~~~l~~la~~~p~~l~~~l--~~i~~~i~~~l~D------~~~~VR~aA~~al~~~~~~i~~r~~------- 230 (1880)
+......|+.+|+.|+.+ |....... +..++.+...|++ ++..+.+.|..+++.+........+
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 223334788999999976 54222112 1455655555543 5667777777777665311100000
Q ss_pred ----------------------------------------hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000194 231 ----------------------------------------RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1880)
Q Consensus 231 ----------------------------------------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1880)
..+.-|....++.+..-|....+.+++.+|+-+|..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 0000012223333344443333457788888888888764
Q ss_pred chh---hh-HHHH--HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC-c-----
Q 000194 271 TGE---FM-MSRY--REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE-R----- 338 (1880)
Q Consensus 271 ~~~---~~-~~~~--~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~-r----- 338 (1880)
.++ .+ ...+ ...++.++.++.+.+..||+.++.+|..++....- ....-...++.|...|..... +
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~--~~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--HHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH--HHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 433 22 2222 23567888889999999999999999999874322 111224678888888875421 1
Q ss_pred --chHHHHHHHHHh
Q 000194 339 --DSGFIALGEMAG 350 (1880)
Q Consensus 339 --~~a~~alg~la~ 350 (1880)
..++.+|+++..
T Consensus 393 v~~~~l~~l~ni~~ 406 (457)
T 1xm9_A 393 ILSSACYTVRNLMA 406 (457)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 256666666653
No 77
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.14 E-value=0.0016 Score=80.11 Aligned_cols=357 Identities=12% Similarity=0.108 Sum_probs=207.9
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHHH
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWYE 1365 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~e 1365 (1880)
++....+.|.|..|+.+++..+... ++.......|..+|.+.|+.|.+.-.++.+... .. ....+..|.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 5677788899999998887766432 344567778899999999999988777643321 11 122344588
Q ss_pred HhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCCh
Q 000194 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGEW 1443 (1880)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~W 1443 (1880)
+.|+|++|+..|++.+...++. .+...++..++...|+|+.-....+... .+..... ....+.....+|+|
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDF---IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV----RSDLGNLLKALGRL 151 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH----HHHHHHHHHTTSCH
T ss_pred HCCCHHHHHHHHHHHHHcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHHccCH
Confidence 9999999999999988654432 3456778888999999866554443211 1111111 11223344555666
Q ss_pred hhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC
Q 000194 1444 DQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVG 1523 (1880)
Q Consensus 1444 d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~ 1523 (1880)
+.-.++....-... ......+..+-.+ .....+.++.+.
T Consensus 152 ~~A~~~~~~al~~~----------------p~~~~~~~~l~~~------------------~~~~g~~~~A~~------- 190 (388)
T 1w3b_A 152 EEAKACYLKAIETQ----------------PNFAVAWSNLGCV------------------FNAQGEIWLAIH------- 190 (388)
T ss_dssp HHHHHHHHHHHHHC----------------TTCHHHHHHHHHH------------------HHTTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHhC----------------CCCHHHHHHHHHH------------------HHHcCCHHHHHH-------
Confidence 55444332210000 0000000000000 000111111111
Q ss_pred CCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 000194 1524 NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETS 1603 (1880)
Q Consensus 1524 ~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~ 1603 (1880)
.+++.+. +.| .+...|...+.+..+.|+++.|...+.++...+|.
T Consensus 191 ---------------------------~~~~al~-----~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-- 235 (388)
T 1w3b_A 191 ---------------------------HFEKAVT-----LDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-- 235 (388)
T ss_dssp ---------------------------HHHHHHH-----HCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT--
T ss_pred ---------------------------HHHHHHh-----cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--
Confidence 1111111 122 34667788888888888888888888887766542
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHh
Q 000194 1604 HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKR 1683 (1880)
Q Consensus 1604 ~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~ 1683 (1880)
.+.+....+..++..|+ ..+|+..+++.+.... . ...++..+|....
T Consensus 236 --------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p------------------~----~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 236 --------HAVVHGNLACVYYEQGL---IDLAIDTYRRAIELQP------------------H----FPDAYCNLANALK 282 (388)
T ss_dssp --------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCS------------------S----CHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC------------------C----CHHHHHHHHHHHH
Confidence 35666677777778884 5778888877654210 0 0122344444443
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCc
Q 000194 1684 ALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD 1763 (1880)
Q Consensus 1684 ~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~ 1763 (1880)
.. ...++....|.++++.+|+...+|..+|....+ . .-...|+..|-+++... .
T Consensus 283 ~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~-------g~~~~A~~~~~~al~~~------p 336 (388)
T 1w3b_A 283 EK------GSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-------Q-------GNIEEAVRLYRKALEVF------P 336 (388)
T ss_dssp HH------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-------T-------TCHHHHHHHHHHHTTSC------T
T ss_pred Hc------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-------c-------CCHHHHHHHHHHHHhcC------C
Confidence 33 235677888888888888888888877765432 1 12346777888877663 2
Q ss_pred chHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000194 1764 DSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1880)
Q Consensus 1764 ~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1880)
........+-.+++..|..++....+++.+..
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23445566677777778877776666666543
No 78
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.06 E-value=6.5e-05 Score=87.52 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=133.7
Q ss_pred hhHHHHHH-HhCCCCHhHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccc
Q 000194 599 DCLSAIFA-ALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL 676 (1880)
Q Consensus 599 ~~l~~L~~-~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~ 676 (1880)
..++.++. +|+.++.+||..|+++||.++..+|..-.-.+. ..+..++.-+..+ .+...|+.|+++|+.+++..+..
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHH
Confidence 35777888 899999999999999999999988742100010 1223334444444 46788999999999999876654
Q ss_pred ccCchH-HHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHHHHHhcCCchhhHHHHHHH
Q 000194 677 IRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVST 753 (1880)
Q Consensus 677 ~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~~~l~d~~~~~~r~~Al~~ 753 (1880)
...+.. ..++.|+..+.++ +..++..++.+|+.++....+ ...++ ..++|.++..|... +..+++.|+.+
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~-----d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~a 232 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGA 232 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHH
Confidence 444433 5677888888764 788999999999999876333 33333 25789999999865 57899999999
Q ss_pred HHHHHhhcCccc----ccCCcchHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Q 000194 754 LGQVVQSTGYVI----TPYNEYPQLLGLLLKMLN-GELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 754 Lg~l~~~~~~~i----~p~~~~p~ll~~Ll~~L~-~~~~~~vr~~~l~~lg~l 801 (1880)
|+.++....... .+...+..+++.....++ .+...++...+.+++-.+
T Consensus 233 L~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 233 LCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 999987743211 111224566666666666 333567777676666543
No 79
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.03 E-value=0.016 Score=74.52 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=85.5
Q ss_pred hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc----c----HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHH
Q 000194 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV----L----PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v----~----p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1880)
.++.|...+.+++..||++|.++++.|+. +|..+ . |.-.+-+ +.|-.+..+ ++.+.|..|+++|..+..
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~~~~~~~~~rL-~lLV~Ll~s-~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFNLENPQSLRNF-NILVKLLQL-SDVESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSCCSSHHHHHHH-HHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHhhcCchhhccH-HHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence 46667777778889999999999999997 55422 1 2111112 333344456 788999999999999875
Q ss_pred hCcccccCch--HHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcC-----CchhhhH--HhHHHHHHHHHhcC
Q 000194 672 NCERLIRPYI--APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-----FGMRQYI--SELMPLIVEALLDG 741 (1880)
Q Consensus 672 ~~~~~~~py~--~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-----~~~~~~~--~~l~p~l~~~l~d~ 741 (1880)
..+...+-.+ ...++.++..+.+.. .+.+++..++.++..|+.... +.+..+. ..+...+.+.++.+
T Consensus 684 ~~~~ia~~ll~~~~gi~~Ll~lL~~~~---~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 684 TIPLIAKELLTKKELIENAIQVFADQI---DDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HCHHHHHHHTTCHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHccccHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 5443222111 346667777777621 278899999999999987432 3344443 23444555555443
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.99 E-value=0.00018 Score=94.13 Aligned_cols=248 Identities=10% Similarity=0.025 Sum_probs=159.2
Q ss_pred hhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc
Q 000194 83 AAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR 162 (1880)
Q Consensus 83 ~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~ 162 (1880)
...|.||++|++-.--+. ++ ....+.|..++. +++..++..|+-++|.+-.. +-..+.++.++..+.
T Consensus 451 ~~ir~gAaLGLGla~~GS-~~-----eev~e~L~~~L~-dd~~~~~~~AalALGli~vG--Tgn~~ai~~LL~~~~---- 517 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGS-AN-----IEVYEALKEVLY-NDSATSGEAAALGMGLCMLG--TGKPEAIHDMFTYSQ---- 517 (963)
T ss_dssp HHHHHHHHHHHHHHSTTC-CC-----HHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhcCC-CC-----HHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcc--cCCHHHHHHHHHHHh----
Confidence 568899999999874332 22 134566666664 44556677899999976442 234455555555444
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFE 242 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~ 242 (1880)
++.++..|.++++.|+.+.-+.+.... .++..+ ..|.++.+|.+|+.|++.... . ......++.++.
T Consensus 518 e~~~e~vrR~aalgLGll~~g~~e~~~----~li~~L---~~~~dp~vRygaa~alglAya--G----TGn~~aIq~LL~ 584 (963)
T 4ady_A 518 ETQHGNITRGLAVGLALINYGRQELAD----DLITKM---LASDESLLRYGGAFTIALAYA--G----TGNNSAVKRLLH 584 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCGGGGH----HHHHHH---HHCSCHHHHHHHHHHHHHHTT--T----SCCHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhhhCCChHHHH----HHHHHH---HhCCCHHHHHHHHHHHHHHhc--C----CCCHHHHHHHHH
Confidence 345667788889999988777665432 333322 237899999999988873211 1 112234455555
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHH-hhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000194 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRY-LEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1880)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~-~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl 321 (1880)
.+.. +. +.++|.+|+.+|+.++-...+ .+..++.. .++.++.||..+..++|.++.-.+.
T Consensus 585 ~~~~---d~-~d~VRraAViaLGlI~~g~~e--------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------- 645 (963)
T 4ady_A 585 VAVS---DS-NDDVRRAAVIALGFVLLRDYT--------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------- 645 (963)
T ss_dssp HHHH---CS-CHHHHHHHHHHHHHHTSSSCS--------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------
T ss_pred Hhcc---CC-cHHHHHHHHHHHHhhccCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------
Confidence 5543 22 357899999999977654332 23333332 3568999999999999999866553
Q ss_pred HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCCC
Q 000194 322 KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375 (1880)
Q Consensus 322 ~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~~ 375 (1880)
..++..|...+.+.. .|..|+.+||.++....+...|.+..+...+.....++.
T Consensus 646 ~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 646 QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc
Confidence 344554444554443 488999999999877666556777777777777775543
No 81
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.98 E-value=0.0016 Score=85.30 Aligned_cols=292 Identities=15% Similarity=0.134 Sum_probs=175.4
Q ss_pred HHHHhhhcc---CCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCC------
Q 000194 504 RDSVVLYLD---DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADAD------ 574 (1880)
Q Consensus 504 ~~~~~~~l~---~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~------ 574 (1880)
...+.+|+. +.++.+|..|..+++.+..... .. ++.-|... +.+++
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--------------------~~----~~~lL~~~-L~~~~~~~~~~ 448 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--------------------RD----TTDYLKNI-IVENSGTSGDE 448 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--------------------HH----HHHHHHHH-HHHHSSCCSCH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--------------------HH----HHHHHHHH-HcCcccccccc
Confidence 345567776 5678899888888776553110 11 22222222 22233
Q ss_pred --hhHHHHHHHhccCCCCcchhh--ccHhhHHHHHHHhCCCCHhHHHHHHHHHHhh--hcCCcccccHHHHHHHHHHHHH
Q 000194 575 --VTVRHSIFSSLYGNRGFDDFL--AQADCLSAIFAALNDEDFDVREYAISVAGRL--SEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 575 --~~vR~~~l~~l~~~~~fd~~L--~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l--~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
+.+|..+.-.|+. -++ ...+++..|...+.|++..+|..|.-.+|-+ ...|+. .+. .++..
T Consensus 449 ~~~~ir~gAaLGLGl-----a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~----ai~----~LL~~ 515 (963)
T 4ady_A 449 DVDVLLHGASLGIGL-----AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE----AIH----DMFTY 515 (963)
T ss_dssp HHHHHHHHHHHHHHH-----HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH----HHH----HHHHH
T ss_pred ccHHHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH----HHH----HHHHH
Confidence 6788887777752 111 1246788888888888888898888888876 333321 122 22222
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1880)
+..+ .+...|..++..||.+.-..++. ++.+++ .+... .++.++.+++.++|-. ..|..-.
T Consensus 516 ~~e~-~~e~vrR~aalgLGll~~g~~e~----~~~li~----~L~~~----~dp~vRygaa~alglA--yaGTGn~---- 576 (963)
T 4ady_A 516 SQET-QHGNITRGLAVGLALINYGRQEL----ADDLIT----KMLAS----DESLLRYGGAFTIALA--YAGTGNN---- 576 (963)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHTTTCGGG----GHHHHH----HHHHC----SCHHHHHHHHHHHHHH--TTTSCCH----
T ss_pred Hhcc-CcHHHHHHHHHHHHhhhCCChHH----HHHHHH----HHHhC----CCHHHHHHHHHHHHHH--hcCCCCH----
Confidence 2233 34567777888888775443332 344444 34432 2778888777776632 2222222
Q ss_pred hHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccc
Q 000194 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1880)
Q Consensus 729 ~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~ 808 (1880)
..+..++..+.+..+..+|..|+.+||.+.-.. | +..+.++..|....++.+|+.+..++|.+++-.|.
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-----~-----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~- 645 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-----Y-----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL- 645 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-----C-----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-----H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-
Confidence 334444444443335679999999999875332 1 22333444444455899999999999998752211
Q ss_pred hhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCCCCcccchHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHH
Q 000194 809 HKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKS 888 (1880)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~~L~d~s~~~~~~~~~~al~~i~~~ 888 (1880)
..++..|.+.+.|+.. .+...++.|+..|...
T Consensus 646 -----------------------------------------------~~aid~L~~L~~D~d~-~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 646 -----------------------------------------------QSAIDVLDPLTKDPVD-FVRQAAMIALSMILIQ 677 (963)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTCSSH-HHHHHHHHHHHHHSTT
T ss_pred -----------------------------------------------HHHHHHHHHHccCCCH-HHHHHHHHHHHHHhcC
Confidence 3466778888888765 3445677777777655
Q ss_pred hCCCCCCCcchhhHHHHHHHhcC
Q 000194 889 MGLGCVPYLPKVLPDLFHTVRTC 911 (1880)
Q Consensus 889 ~~~~~~~~l~~iip~ll~~l~~~ 911 (1880)
......|.+.+++..+...+.+.
T Consensus 678 tnna~~~rva~~l~~L~~~~~dk 700 (963)
T 4ady_A 678 QTEKLNPQVADINKNFLSVITNK 700 (963)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCS
T ss_pred CccccchHHHHHHHHHHHHHhcc
Confidence 44555678888888888887653
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.95 E-value=0.0015 Score=65.96 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=158.5
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCch
Q 000194 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1880)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~ 147 (1880)
.++.+.+..++...-|..+..|+..+..+.....+--.+.+.++.-.++ .+.-...-...++++|.++.. .+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~----ksEaIpltqeIa~a~G~la~i----~P 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK----KSEAIPLTQEIAKAFGQMAKE----KP 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH----HCCSHHHHHHHHHHHHHHHHH----CH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh----hcccCchHHHHHHHHhHHHHh----CH
Confidence 3455556667777778899999999888876542222333333333333 244466668889999999996 78
Q ss_pred hHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
+.|...++-.+.-.+-. ++..|..-..+|++++..-|..+. .++.-|...+.||+..=|-+|.+-++++
T Consensus 103 e~v~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~----~v~rdi~smltskd~~Dkl~aLnFi~al------ 171 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA----SIVRDFMSMLSSKNREDKLTALNFIEAM------ 171 (253)
T ss_dssp HHHHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHTSCSSHHHHHHHHHHHHTC------
T ss_pred HHHHhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHH------
Confidence 99999999888776532 556788888899999999888754 6777777888899977777776644432
Q ss_pred hchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHh
Q 000194 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPR 307 (1880)
Q Consensus 228 r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~ 307 (1880)
+..+..+...++|.+..-|.+.+ .-+|.++...|+.+.+.. |.+++++...+.-+++++..|++.+.+.++.
T Consensus 172 --Gen~~~yv~PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~n-----pklRkii~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 172 --GENSFKYVNPFLPRIINLLHDGD-EIVRASAVEALVHLATLN-----DKLRKVVIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp --CTTTHHHHGGGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSC-----HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred --hccCccccCcchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcC-----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 12445677888999988888764 678888888999888643 5577777777777899999999999999888
Q ss_pred Hhh
Q 000194 308 IAH 310 (1880)
Q Consensus 308 la~ 310 (1880)
++.
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 83
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.92 E-value=0.0077 Score=78.75 Aligned_cols=167 Identities=14% Similarity=0.123 Sum_probs=107.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|..++.+..+.|+++.|...+.++....+. .+......+..+...|+ ..+|+..+++.+...
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG----------THLPYLFLGMQHMQLGN---ILLANEYLQSSYALF 471 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT----------CSHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45778888888888889999888888887765442 24555666777777774 578888888766431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh------ccc-chHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC------ATK-WGKAWHSWA 1719 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~------~~~-~~k~w~~wA 1719 (1880)
.. + ...+..+|...... ...++..+.|+++.+. +|+ +..+|..+|
T Consensus 472 ~~------------------~----~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 472 QY------------------D----PLLLNELGVVAFNK------SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp CC------------------C----HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred CC------------------C----hHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 10 0 12233444443332 2357788888888777 444 367788777
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
..+.+. .-...|++.|-+++... +. .......+..++...|..++..+.+++.+.
T Consensus 524 ~~~~~~--------------g~~~~A~~~~~~~~~~~-----p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 524 HAYRKL--------------KMYDAAIDALNQGLLLS-----TN-DANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHT--------------TCHHHHHHHHHHHHHHS-----SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHh--------------cCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 765541 12346777787777764 22 234456666777788887777666666554
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.90 E-value=0.00041 Score=80.80 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=120.1
Q ss_pred hhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHh-hcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHh
Q 000194 84 AENLGALRAIDELIDVALGENASKVSK--FSNYMRT-VFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALD 159 (1880)
Q Consensus 84 ~~r~~~i~ai~~Li~~~~~~~~~~~~~--~~~~L~~-~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~ 159 (1880)
..|..|+..+..++.-. ++...+.+ -.+.|.. ++. +.+++++..|++++|.++.........+++ ..++.++.
T Consensus 55 e~k~~Al~~L~~lv~~~--dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCh--hhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 46777777777776532 12222111 1234445 675 568999999999999998752222222333 35677777
Q ss_pred hhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH-
Q 000194 160 WLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY- 237 (1880)
Q Consensus 160 ~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l-~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~- 237 (1880)
.|.++.+...|..|+.+|+.++.+.|......+ ...++.+...|+++++.||..|+.||+.+... ....+....
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~----~~~~~~~vv~ 207 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG----HPEHKGTLCS 207 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC----ChHHHHHHHH
Confidence 776555567888999999999987665333222 35788899999999999999999999987653 111222222
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000194 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1880)
Q Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1880)
..+++.+..-|.+++ .+++..++.+|+.++..
T Consensus 208 ~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEH-SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHhC
Confidence 246666666676664 67899999999999875
No 85
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.88 E-value=0.013 Score=76.50 Aligned_cols=166 Identities=13% Similarity=0.031 Sum_probs=91.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|..++..+.+.|+++.|...+.++.+..+. .+.+....+......|+ ..+|+..+++.+....
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~ 404 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE----------KAVTWLAVGIYYLCVNK---ISEARRYFSKSSTMDP 404 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------SHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCC
Confidence 3455666666666666666666666655543321 24444555566666663 4566666665543110
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
.. ...-..++.+|...|+ .++.++.|+++.+..|+...+|...|..+.+.
T Consensus 405 ~~---------------~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 454 (597)
T 2xpi_A 405 QF---------------GPAWIGFAHSFAIEGE-------------HDQAISAYTTAARLFQGTHLPYLFLGMQHMQL-- 454 (597)
T ss_dssp TC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH--
T ss_pred CC---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCccchHHHHHHHHHHHHc--
Confidence 00 0001123333333333 35666777777777777777777666554431
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
.-...|++.|-+++... +. .......+..+++..|..++..+.+++.+.
T Consensus 455 ------------g~~~~A~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 455 ------------GNILLANEYLQSSYALF-----QY-DPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp ------------TCHHHHHHHHHHHHHHC-----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 12346777777777663 22 234456677777888887776666665543
No 86
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.86 E-value=0.00066 Score=85.90 Aligned_cols=354 Identities=12% Similarity=0.090 Sum_probs=197.8
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHH--HHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
++.++.+++++++..|+.++..+...... ....+ ...++.|+.. +..++++++..+..+
T Consensus 53 LV~~L~s~~~~~q~~Aa~~L~~La~~~~~------------------~k~~V~~~G~Ip~LV~L-L~s~~~~vq~~Aa~A 113 (584)
T 3l6x_A 53 VIAMLGFRLDAVKSNAAAYLQHLCYRNDK------------------VKTDVRKLKGIPVLVGL-LDHPKKEVHLGACGA 113 (584)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTCHH------------------HHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCChH------------------HHHHHHHcCCcHHHHHH-HCCCCHHHHHHHHHH
Confidence 34667788899998888877766532210 11111 2345666654 567889999888777
Q ss_pred ccC---C--CCcchhhccHhhHHHHHHHhCC-CCHhHHHHHHHHHHhhhcCCcccccHHHHHH---HHHHHHH-------
Q 000194 585 LYG---N--RGFDDFLAQADCLSAIFAALND-EDFDVREYAISVAGRLSEKNPAYVLPALRRH---LIQLLTY------- 648 (1880)
Q Consensus 585 l~~---~--~~fd~~L~~~~~l~~L~~~l~D-~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~---l~~~l~~------- 648 (1880)
|.. . ...-..+.....++.|+..|.. .+.++++.|..+|..|+.. +..-....... |.+++..
T Consensus 114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWER 192 (584)
T ss_dssp HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC-
T ss_pred HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccc
Confidence 631 0 0000112223457888888875 5788999999999999873 32211111111 2222210
Q ss_pred -------HhcCCCChHhHHHHHHHHHHHHHhCcc---cccCchHHHHHHHHHHhccCC-CCCCChhHHHHHHHHHHHHHH
Q 000194 649 -------LEQSSADNKCREESAKLLGCLIRNCER---LIRPYIAPIHKALVARLLEGT-GINANNGIISGVLVTVGDLAR 717 (1880)
Q Consensus 649 -------l~~~~~~~~~r~~a~~~L~~l~~~~~~---~~~py~~~il~~ll~~l~~~~-~~~~~~~v~~~~~~~l~~La~ 717 (1880)
+.+. .+...++.|+.+|..|+...+. .+... ..+++.|+..++... ....+....+.++.+|..|+.
T Consensus 193 ~~~~~~k~~~~-~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~-~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~ 270 (584)
T 3l6x_A 193 EPNEDCKPRHI-EWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY 270 (584)
T ss_dssp ---------CC-CCHHHHHHHHHHHHHHTSSCHHHHHHHHHS-TTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT
T ss_pred ccccccccccc-ccHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc
Confidence 1122 3568889999999999864322 22111 123344444443210 001245566777767766553
Q ss_pred hcCC-------------------------chhh-hHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc---cccC
Q 000194 718 VGGF-------------------------GMRQ-YISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV---ITPY 768 (1880)
Q Consensus 718 ~~g~-------------------------~~~~-~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~---i~p~ 768 (1880)
.... .+.. +-...++.++..|++..+...+++|+++|..++...+.. +.-.
T Consensus 271 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~ 350 (584)
T 3l6x_A 271 QVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA 350 (584)
T ss_dssp THHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH
Confidence 2100 0100 123567888888876666789999999999998643211 0000
Q ss_pred CcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcccCccchhhccccCCCcccccccCCCCCCCCCCCcccccccCCCCC
Q 000194 769 NEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFA 848 (1880)
Q Consensus 769 ~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 848 (1880)
...-..++.|..+|... +..++..+..+|+.+.. ++.
T Consensus 351 v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~-~~~----------------------------------------- 387 (584)
T 3l6x_A 351 LRQEKALSAIADLLTNE-HERVVKAASGALRNLAV-DAR----------------------------------------- 387 (584)
T ss_dssp HTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHT-TCS-----------------------------------------
T ss_pred HHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhC-Chh-----------------------------------------
Confidence 11124688888888765 67899999999888752 111
Q ss_pred CCcccchHHHHHHHHHHhcCCCh-------hhhHHHHHHHHHHHHHHhCCCCCCC--cchhhHHHHHHHhcC--CcchhH
Q 000194 849 TSEDYYSTVAINSLMRILRDPSL-------ASYHQKVVGSLMFIFKSMGLGCVPY--LPKVLPDLFHTVRTC--DDYLKD 917 (1880)
Q Consensus 849 ~~~~~~~~~vi~~Ll~~L~d~s~-------~~~~~~~~~al~~i~~~~~~~~~~~--l~~iip~ll~~l~~~--~~~~~~ 917 (1880)
..+.+..-+++.|+..|...+. .+....++.++.+|+..- +..... =...+|.|.+.+++. .+...+
T Consensus 388 -~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~-~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k 465 (584)
T 3l6x_A 388 -NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAEN-LEAAKKLRETQGIEKLVLINKSGNRSEKEVR 465 (584)
T ss_dssp -CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHTCSSSCHHHHH
T ss_pred -HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCCChHHHH
Confidence 0011234577888888876521 123334555555554210 100111 135688888888775 445666
Q ss_pred HHHHHHHHHH
Q 000194 918 YITWKLGTLV 927 (1880)
Q Consensus 918 ~~~~~l~~lv 927 (1880)
.+...|..+.
T Consensus 466 ~Aa~vL~nl~ 475 (584)
T 3l6x_A 466 AAALVLQTIW 475 (584)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 87
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.84 E-value=0.0012 Score=81.66 Aligned_cols=359 Identities=13% Similarity=0.081 Sum_probs=186.0
Q ss_pred CCCCHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHhhhcCCC------------hhh
Q 000194 19 GGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEA-FSRFMDQLYDRISGLLESND------------AAE 85 (1880)
Q Consensus 19 ~~~~~~~~~~l~~~l~s~~~~~~~aa~~l~~~v~~~~~~~~~~~-~~~~~~~l~~~i~~l~~s~~------------~~~ 85 (1880)
.+.--+.+..+..+|.+.+.+ + . .+.+. +. +-+++. ..-.-.-.++.+.+++++++ ...
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~-~-~---~~~ll-~~--~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~ 98 (458)
T 3nmz_A 27 LGTKVEMVYSLLSMLGTHDKD-D-M---SRTLL-AM--SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98 (458)
T ss_dssp ------------------CCH-H-H---HHHHH-HH--HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHH
T ss_pred cCchHHHHHHHHHHhcCCCHH-H-H---HHHHH-HH--HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHH
Confidence 555667778888888765433 1 1 22222 11 122221 10011123455666776533 477
Q ss_pred hhhHHHHHhHhhccccCcchh-HH----------HHHHHHHHhhcccCC-ChH-----HHH-------HHHHHHHHHhhh
Q 000194 86 NLGALRAIDELIDVALGENAS-KV----------SKFSNYMRTVFEVKR-DRE-----ILV-------LASKVLGHLARA 141 (1880)
Q Consensus 86 r~~~i~ai~~Li~~~~~~~~~-~~----------~~~~~~L~~~l~~~~-d~~-----v~~-------~aa~~l~~L~~~ 141 (1880)
|.-|.-|+..++....+.... .. +.+.+.+.+++.... +.+ +.. .|.++|++++..
T Consensus 99 ~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~ 178 (458)
T 3nmz_A 99 RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178 (458)
T ss_dssp HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC
Confidence 888999999998876443221 11 111223333343210 111 433 788899988653
Q ss_pred CCCCchhHHH-HHHHHHHhhhcC----------CCcchhHHHHHHHHHHHHhhcCc--cchhchHHHHHHHHHHhcCCch
Q 000194 142 GGAMTADEVE-FQVKMALDWLRG----------DRVEYRRFAAVLILKEMAENAST--VFNVHVAEFVDAIWVALRDPTL 208 (1880)
Q Consensus 142 ~g~~~~~~v~-~~~~~~~~~l~~----------~~~~~~R~aA~~~l~~la~~~p~--~l~~~l~~i~~~i~~~l~D~~~ 208 (1880)
.. ....+++ ..++.++..|.. ..+...+..|+.+|..|+.+.+. .........+|.++..|+++++
T Consensus 179 ~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~ 257 (458)
T 3nmz_A 179 EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257 (458)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred HH-HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH
Confidence 10 0111111 134444444421 12234577888999999977542 1111245678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH---HHHHH
Q 000194 209 AVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY---REVAE 284 (1880)
Q Consensus 209 ~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~---~~i~~ 284 (1880)
.|++.|+.||+.+... .+...+.... ...++.+..-|....+.+.+..++.+|..|...+.+. ...+ ...++
T Consensus 258 ~v~~~A~~aL~nLs~~---~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~n-k~~I~~~~Gal~ 333 (458)
T 3nmz_A 258 DLQQVIASVLRNLSWR---ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN-KADICAVDGALA 333 (458)
T ss_dssp HHHHHHHHHHHHHTSS---CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHH-HHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHhcC---CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHH-HHHHHHhcCcHH
Confidence 9999999999876421 0111222222 2345666665433334677888888888887633221 2222 23556
Q ss_pred HHHHHhhcchh----HHHHHHHHHhHhHhhh---ChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHHHHHHhhchh
Q 000194 285 IVLRYLEHRDR----LVRLSITSLLPRIAHF---LRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIALGEMAGALDG 354 (1880)
Q Consensus 285 ~ll~~~~~~~~----~Vr~~~~~~i~~la~~---~~~~f~~~yl-~~~~~~Ll~~L~~~~~--r~~a~~alg~la~~v~~ 354 (1880)
.+...+.+.+. .+++.++.+|..++.+ .++ ...... ...++.|+..|++.+. +..|..+|++++..-.+
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~-~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~ 412 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED-HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 412 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHH-HHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH
Confidence 66677766543 4888899999988863 332 122111 3568888888886653 67899999998743332
Q ss_pred hhhhhh--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHHH
Q 000194 355 ELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1880)
Q Consensus 355 ~~~p~l--~~i~~~l~~~l~~~~~~~~~~a~~~l~~la~~ 392 (1880)
. ..++ ...++.+.+.+...+.+.+..+..++..|+..
T Consensus 413 ~-~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 413 D-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp H-HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred H-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2 2222 23566666666544433345677777777654
No 88
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.83 E-value=0.025 Score=67.85 Aligned_cols=324 Identities=13% Similarity=0.040 Sum_probs=191.9
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.+|....+.|.|..|+.+++...... ++.....-.+..+|..+|+.+.+...++..... .+ ....+..+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56778888999999999988776532 334567788999999999999998888754321 11 12334468
Q ss_pred HHhcCHHHHHHHHHHHHhccCCC-chhHHhHhh------------HhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhH
Q 000194 1365 EKLQRWDDALKAYTNKASQASNP-HIVLEATLG------------RMRCLAALARWEELNNLCKEYW--TPAEPAARLEM 1429 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~-~~~~~~~~g------------~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~ 1429 (1880)
.+.|+|++|+..|++.+...+.. .. .+.... +-.++...|+|+.-....+... .+... ..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 156 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA----EL 156 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch----HH
Confidence 89999999999999988654310 11 122222 2477888888877666655422 11111 22
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHH-HHHHHHHHhcChhhhHHHHHHHHHHhHhh
Q 000194 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTF-FRAVLLVRRGKVLESYERAYSNMVRVQQL 1508 (1880)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f-~~a~~~i~~~~~~esy~ray~~l~~lq~L 1508 (1880)
....+.+.+.+|+|+.-..+....-... ......+ ..+......+
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~la~~~~~~~------------------- 202 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK---------------SDNTEAFYKISTLYYQLG------------------- 202 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------SCCHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcC-------------------
Confidence 2345567788888887766555332110 0000011 1111111111
Q ss_pred hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHH
Q 000194 1509 SELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA 1588 (1880)
Q Consensus 1509 ~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a 1588 (1880)
+.++.+++ +++=+...+.+...|...-.+. .....+..+....+.|+++.|
T Consensus 203 -~~~~A~~~--------------------~~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 203 -DHELSLSE--------------------VRECLKLDQDHKRCFAHYKQVK--------KLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp -CHHHHHHH--------------------HHHHHHHCTTCHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHH
T ss_pred -CHHHHHHH--------------------HHHHHhhCccchHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHH
Confidence 11111111 1111111122222332222221 245566678889999999999
Q ss_pred HHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcch
Q 000194 1589 RSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNV 1668 (1880)
Q Consensus 1589 ~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1880)
...+.++....|... . .........+..+...|+ ..+|+..++..+.....
T Consensus 254 ~~~~~~~~~~~~~~~-~-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~-------------------- 304 (359)
T 3ieg_A 254 TSKYESVMKTEPSVA-E-----YTVRSKERICHCFSKDEK---PVEAIRICSEVLQMEPD-------------------- 304 (359)
T ss_dssp HHHHHHHHHHCCSSH-H-----HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHHHHHHhcCCCch-H-----HHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCcc--------------------
Confidence 999999887655310 0 001234456788888885 68999999987753110
Q ss_pred hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1669 PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1669 ~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
...++..+|...... ...++....|+++++++|+...+|..++.....
T Consensus 305 --~~~~~~~~~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 305 --NVNALKDRAEAYLIE------EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp --CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 123444555554443 246789999999999999999999988877554
No 89
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.78 E-value=0.012 Score=72.20 Aligned_cols=334 Identities=14% Similarity=0.126 Sum_probs=192.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++.+..+++.+.+|..+.+...... +......-.|..+|.+.|+.+.+...++.+... ++ .......+
T Consensus 38 ~l~~~~~~~~~~~~a~~~~~~a~~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSAHFSTLAIKQN------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 56777788889999998887766432 344567888999999999999999888754321 11 11233458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1880)
.+.|+|++|+..|++.+...++. ......+-.++..+|+|+.-....+... .+..... -...+.+....|+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDL---YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA----WSNLGCVFNAQGE 184 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTC---THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCC
Confidence 89999999999999988754443 3445667788999999987766554321 1111111 1123456677888
Q ss_pred hhhHHHHHhhcCC-CCcchhhccccccccCCCCCchHHH-HHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcC
Q 000194 1443 WDQMAEYVSRLDD-GDESKLRGLGNTAANGDGSSNGTFF-RAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTL 1520 (1880)
Q Consensus 1443 Wd~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~f~-~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~ 1520 (1880)
++.-..+....-. ++ .....++ .+......+. |..+.. .++++++. .
T Consensus 185 ~~~A~~~~~~al~~~p----------------~~~~~~~~lg~~~~~~~~----~~~A~~---------~~~~al~~--~ 233 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDP----------------NFLDAYINLGNVLKEARI----FDRAVA---------AYLRALSL--S 233 (388)
T ss_dssp HHHHHHHHHHHHHHCT----------------TCHHHHHHHHHHHHTTTC----TTHHHH---------HHHHHHHH--C
T ss_pred HHHHHHHHHHHHhcCC----------------CcHHHHHHHHHHHHHcCC----HHHHHH---------HHHHHHhh--C
Confidence 8776554443210 00 0000110 0111111111 111111 11112111 1
Q ss_pred CCCCCchhhHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 000194 1521 PVGNPVAEGRRAIIRNMWTER--IQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQ 1597 (1880)
Q Consensus 1521 ~~~~~~~~~~~~~l~~~W~~R--l~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~ 1597 (1880)
|.. . ..|... ......+++.=.. ..+..+ +.| ++...|..++.+..+.|+++.|...+.++..
T Consensus 234 p~~----~-------~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 234 PNH----A-------VVHGNLACVYYEQGLIDLAID--TYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp TTC----H-------HHHHHHHHHHHHTTCHHHHHH--HHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCC----H-------HHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 110 0 011110 0001112211111 111111 223 4467899999999999999999999998887
Q ss_pred CCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHH
Q 000194 1598 YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLK 1677 (1880)
Q Consensus 1598 ~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 1677 (1880)
.+|. .+......+.++...|+ ..+|+..+++.+... + -.+..+..
T Consensus 300 ~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~---p-------------------~~~~~~~~ 344 (388)
T 1w3b_A 300 LCPT----------HADSLNNLANIKREQGN---IEEAVRLYRKALEVF---P-------------------EFAAAHSN 344 (388)
T ss_dssp HCTT----------CHHHHHHHHHHHHTTTC---HHHHHHHHHHHTTSC---T-------------------TCHHHHHH
T ss_pred hCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---C-------------------CcHHHHHH
Confidence 6542 35666777777777784 678988888754310 0 01223444
Q ss_pred HhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1678 lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+|.-.... ...++....|+++++.+|+...+|..+|...
T Consensus 345 l~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 345 LASVLQQQ------GKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHTT------TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 44444332 2357888999999999999999999888754
No 90
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.77 E-value=0.044 Score=74.32 Aligned_cols=163 Identities=14% Similarity=0.153 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000194 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1880)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlL 1773 (1880)
.++.+..|+.++.+++.+.-.|..+|....+ | ..+-+..+++.|-..+...+--.-+ ...+--..+.
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftELaiLyaK----y--------~peklmEhlk~f~~rini~k~~r~~-e~~~lW~elv 1362 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTELAILYSK----F--------KPQKMREHLELFWSRVNIPKVLRAA-EQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHHHHHHHh----C--------CHHHHHHHHHHHHHhcccchHhHHH-HHHHHHHHHH
Confidence 4677777777777777777777666655443 1 1234455566666555431000000 1234456777
Q ss_pred HHHHhcCCcHHHHHHHHhccc-CCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHH
Q 000194 1774 TLWFNHGATEEVQIALQKGFA-HVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNL 1852 (1880)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~~~-~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~ 1852 (1880)
.|...+|+......+|.++.. .-....|-. .+.... + -.+....+.=....||..+-+-|.++..--+..
T Consensus 1363 ~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~----~i~kv~--n---~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~ 1433 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKD----IITKVA--N---VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHT 1433 (1630)
T ss_pred HHHHhcccHHHHHHHHHhccHhhhhhHHHHH----Hhcccc--c---HHHHHHHHHHHHhhChHHHHHHHHHhhhcCChH
Confidence 777777776654444444421 111222222 222222 2 245555555556899999888888876544444
Q ss_pred HHH----------HHHHHHHHHhhcccccccccccc
Q 000194 1853 RRA----------AAQEVVDKVRQHSGVLVDQSCYT 1878 (1880)
Q Consensus 1853 R~~----------~a~~Il~~~~~~~~~lv~~a~~~ 1878 (1880)
|.- .++.-+..+..++..-|++|+-+
T Consensus 1434 R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~e 1469 (1630)
T 1xi4_A 1434 RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNN 1469 (1630)
T ss_pred HHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHH
Confidence 431 45666666667777888887654
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.69 E-value=0.00094 Score=75.00 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=122.4
Q ss_pred CChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhc---CCCcchhHHHHHHHHHHHHhhcC---ccchhc-hHHH
Q 000194 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAVLILKEMAENAS---TVFNVH-VAEF 195 (1880)
Q Consensus 123 ~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~---~~~~~~~R~aA~~~l~~la~~~p---~~l~~~-l~~i 195 (1880)
.|..-...|.+.|-..... .++-+...+.-++.|+. -+++...=..++.+|..+..... ..+..| ...+
T Consensus 58 ~d~k~~~~ale~L~~~l~~----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhh----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3565555555555544432 23333344555678874 34555555677888877765432 235555 5889
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhh
Q 000194 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM 275 (1880)
Q Consensus 196 ~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~ 275 (1880)
+|.++.-++|++..||+++...+..+..+.. ...+++.+..|+.+.+ |++|.+++..++.++...|-.
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----------~~~v~~~l~~g~ksKN-~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----------PLKMTPMLLDALKSKN-ARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----------HHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHhcCCC-
Confidence 9999999999999999999998877655422 2457777888998875 999999999999999855432
Q ss_pred HHHHHHHH---HHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 276 MSRYREVA---EIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 276 ~~~~~~i~---~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
+ ...+ ..+..++++++..||.+|++++..+-...++.+
T Consensus 202 -~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 202 -P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp -G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred -c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 2234 667788899999999999999987766555554
No 92
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.61 E-value=0.087 Score=65.67 Aligned_cols=327 Identities=12% Similarity=0.046 Sum_probs=184.1
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHH
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESW 1363 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~ 1363 (1880)
..++....++|.|..|+.+++...... ++.....-.+..+|..+|+.+.+.-.++.+... .+ ....+..
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 356777888899999998887765432 334567778899999999999998888754321 11 1123445
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhH------------hhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHhH
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEAT------------LGRMRCLAALARWEELNNLCKEYWT--PAEPAARLEM 1429 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~------------~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~~ 1429 (1880)
|.+.|++++|+..|++.+...++.....+.. ...-.++...|+|+.-....+.... +... ..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 179 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA----EL 179 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HH
Confidence 8899999999999998876433321000111 1224456677777665555443211 1111 11
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHH-HhHhh
Q 000194 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMV-RVQQL 1508 (1880)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~-~lq~L 1508 (1880)
....+.+...+|+|+.-..+....- ...... ..++..+. -....
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~------------------------------~~~~~~-----~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAAS------------------------------KLKNDN-----TEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHH------------------------------HHHCSC-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH------------------------------HhCCCC-----HHHHHHHHHHHHHc
Confidence 2233456666676666544333221 000000 00000000 00011
Q ss_pred hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHH
Q 000194 1509 SELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA 1588 (1880)
Q Consensus 1509 ~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a 1588 (1880)
.+.++.+.+ +++=+...+.+...|..+-.++ ....++..+..+.+.|+++.|
T Consensus 225 g~~~~A~~~--------------------~~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~A 276 (450)
T 2y4t_A 225 GDHELSLSE--------------------VRECLKLDQDHKRCFAHYKQVK--------KLNKLIESAEELIRDGRYTDA 276 (450)
T ss_dssp TCHHHHHHH--------------------HHHHHHHCTTCHHHHHHHHHHH--------HHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHH--------------------HHHHHHhCCChHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHH
Confidence 111222111 1111111222333333221111 134567779999999999999
Q ss_pred HHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcch
Q 000194 1589 RSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNV 1668 (1880)
Q Consensus 1589 ~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1880)
...+.++....|.. +. .........+..++..|+ ..+|+..++..+.... .
T Consensus 277 ~~~~~~~l~~~p~~-~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p------------------~-- 327 (450)
T 2y4t_A 277 TSKYESVMKTEPSI-AE-----YTVRSKERICHCFSKDEK---PVEAIRVCSEVLQMEP------------------D-- 327 (450)
T ss_dssp HHHHHHHHHHCCSS-HH-----HHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHCT------------------T--
T ss_pred HHHHHHHHhcCCcc-hH-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCc------------------c--
Confidence 99999988765431 00 002355666788888884 6899999988764311 0
Q ss_pred hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1669 PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1669 ~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
.+.++..+|.-.... ...++....|+++++++|+...+|..++......
T Consensus 328 --~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 328 --NVNALKDRAEAYLIE------EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp --CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 123344445444433 3467889999999999999999999988765543
No 93
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.59 E-value=0.027 Score=72.34 Aligned_cols=174 Identities=13% Similarity=0.040 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+.+++..|+ ..+|+..+++.+.....
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPE----------YPPTYYHRGQMYFILQD---YKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC----------CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999998876552 46788888999999995 68899999987653211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
. ..++..+|...... ...++....|+++.+.+|+...+|..+|..+...
T Consensus 343 ------------------~----~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 391 (537)
T 3fp2_A 343 ------------------N----VYPYIQLACLLYKQ------GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR--- 391 (537)
T ss_dssp ------------------C----SHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT---
T ss_pred ------------------C----HHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---
Confidence 0 12234444444333 2357888999999999999999999998776541
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc----------CCcHHHHHHHHhcccCCC
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH----------GATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~----------g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|+..|-+++...+........+......-.++... |...+....+++.+..-|
T Consensus 392 -----------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 392 -----------GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp -----------TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred -----------CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 1234678888888877543222222222233444555555 665565566666554434
No 94
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.56 E-value=0.047 Score=68.13 Aligned_cols=139 Identities=13% Similarity=0.072 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHH------------HHHHHHHHhcCCcchHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVM------------YAYLKYQWSLGEDLKRKE 1634 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~------------~~~ak~lw~~g~~~~~~~ 1634 (1880)
.+...|..++.+..+.|+++.|...+.++.+..|. .+... +..+..+...|+ ..+
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~ 275 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD----------HKRCFAHYKQVKKLNKLIESAEELIRDGR---YTD 275 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHHHHHHHHHHHTC---HHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHH
Confidence 45789999999999999999999999998876553 12222 223777778884 688
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000194 1635 AFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1880)
Q Consensus 1635 Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1880)
|+..+++.+.... .+......++..+|...... ...++.+..|+++++.+|+...+
T Consensus 276 A~~~~~~~l~~~p------------------~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~ 331 (450)
T 2y4t_A 276 ATSKYESVMKTEP------------------SIAEYTVRSKERICHCFSKD------EKPVEAIRVCSEVLQMEPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHCC------------------SSHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCC------------------cchHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCcccHHH
Confidence 9999988765311 12344566777777776654 45789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
|...|..+... .-...|+..|-+++.+.
T Consensus 332 ~~~l~~~~~~~--------------~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 332 LKDRAEAYLIE--------------EMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHh--------------cCHHHHHHHHHHHHHhC
Confidence 99999887541 12347888999988875
No 95
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.51 E-value=0.0013 Score=73.88 Aligned_cols=186 Identities=10% Similarity=-0.007 Sum_probs=137.2
Q ss_pred CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH
Q 000194 165 RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1880)
Q Consensus 165 ~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~ 244 (1880)
+++..|.+|+..|....+..|+.+...+.-++.-+.-.+.|+++.|-..+.+.+..++..+.+++......-...++|.+
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L 137 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL 137 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 56688999999998888777777666777677755545669999999999999999888877655445555567889999
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH
Q 000194 245 QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC 324 (1880)
Q Consensus 245 ~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~ 324 (1880)
...++++. ..+|.++-.++..+....+ ...+.+.++..+.++|..+|..++..+..+-.-.+..+ ...
T Consensus 138 veKlGd~k-~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~ 205 (266)
T 2of3_A 138 LLKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-----LKS 205 (266)
T ss_dssp HHGGGCSS-HHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-----GGG
T ss_pred HHHhCCCh-HHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-----ccc
Confidence 99999885 4667777777766654221 12355667777899999999999998887653222222 223
Q ss_pred H---HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhhH
Q 000194 325 M---NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPT 362 (1880)
Q Consensus 325 ~---~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~~~p~l~~ 362 (1880)
+ +.+...+.+.+ .|.+|+.|+..+-..+|+.+..|++.
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 4 66777776543 69999999999999999987776643
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00095 Score=77.71 Aligned_cols=193 Identities=13% Similarity=0.064 Sum_probs=121.9
Q ss_pred HhhhcCCChhhhhhHHHHHhHhhccccCcch-----hHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhH
Q 000194 75 SGLLESNDAAENLGALRAIDELIDVALGENA-----SKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1880)
Q Consensus 75 ~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~-----~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~ 149 (1880)
.+-+.|++|..|+.|+..+..++........ ....++...+...+. +.+..|...|.+++..++...+...
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~--- 90 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSS--- 90 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC------
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhh---
Confidence 3557899999999999998888754211100 001112233444442 3345555555555555544321100
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHhhh
Q 000194 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV-ALRDPTLAVRERAVEALRACLRVIEKR 228 (1880)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~-~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1880)
.....+..++..+++.++. ++.|+++.+|..|.+++-.++....
T Consensus 91 ---------------------------------~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-- 135 (278)
T 4ffb_C 91 ---------------------------------LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-- 135 (278)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--
T ss_pred ---------------------------------cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--
Confidence 0011233566777887775 6899999999999988766654221
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh-h--hHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000194 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE-F--MMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1880)
Q Consensus 229 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~-~--~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i 305 (1880)
....+++.+..++.+.+ +.++.+++.+|..++...|. . ..+.+..++..+...++++++.||.++..++
T Consensus 136 -------~~~~~~e~l~~~l~~Kn-pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 136 -------SITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp -------SSHHHHHHHGGGGGCSC-HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11345677777887765 78899999999999885432 1 3345667777888889999999999999999
Q ss_pred HhHhhhChh
Q 000194 306 PRIAHFLRD 314 (1880)
Q Consensus 306 ~~la~~~~~ 314 (1880)
+.+-.+.++
T Consensus 208 ~~ly~~~G~ 216 (278)
T 4ffb_C 208 VEIYKVTGN 216 (278)
T ss_dssp HHHHTC---
T ss_pred HHHHHHhCc
Confidence 988766553
No 97
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.48 E-value=0.013 Score=69.64 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=87.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|..++.+..+.|+++.|...+.++....+..... ......+.+....+.++...|+ ..+|+..+++.+....
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE-VTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIP 267 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS-CTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc-ccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCc
Confidence 46778888999999999999999998887654322110 0011235778888999999995 6899999998775321
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
.. ..-...++.++...|+| ++....|+++.+++|+...+|..+|....
T Consensus 268 ~~---------------~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 268 QN---------------ASTYSAIGYIHSLMGNF-------------ENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp TC---------------SHHHHHHHHHHHHHTCH-------------HHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred cc---------------hHHHHHHHHHHHHhccH-------------HHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 10 11122355666555554 67889999999999999999999887643
No 98
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.48 E-value=0.033 Score=71.46 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++....|. .+.+....+.++...|+ ..+|+..++..+....
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT----------LPEVPTFFAEILTDRGD---FDTAIKQYDIAKRLEE 409 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCC
Confidence 4578889999999999999999999998876542 36677788899988985 6889999998765432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHH----------hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKL----------GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS 1717 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l----------g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~ 1717 (1880)
...... ......-.++.++... |+| ++....|+++++.+|+...+|..
T Consensus 410 ~~~~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 410 VQEKIH---------VGIGPLIGKATILARQSSQDPTQLDEEKF-------------NAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HCSSCS---------STTHHHHHHHHHHHHHHTC----CCHHHH-------------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhH---------HHHHHHHHHHHHHHHHhhccchhhhHhHH-------------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 111000 0000012235666666 554 67889999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1718 WALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1718 wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
+|....+. + -...|++.|-+++.+.
T Consensus 468 l~~~~~~~-------g-------~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 468 LAQLKLQM-------E-------KIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHT-------T-------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh-------c-------cHHHHHHHHHHHHHhC
Confidence 98876541 1 2347888999998875
No 99
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.09 Score=66.75 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=100.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++....|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE----------APEVPNFFAEILTDKND---FDKALKQYDLAIELE 402 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT----------CSHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhh
Confidence 35678999999999999999999999888776542 35677788888888885 678999998876543
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhh---cCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRA---LPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~---~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
.... .....+..+..+|..... . ...++....|+++++.+|+...+|...|....
T Consensus 403 ~~~~----------------~~~~~~~~~~~l~~~~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 403 NKLD----------------GIYVGIAPLVGKATLLTRNPTV------ENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460 (514)
T ss_dssp HTSS----------------SCSSCSHHHHHHHHHHHTSCCT------THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hccc----------------hHHHHHHHHHHHHHHHhhhhhc------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 2110 000112234444444433 2 23578899999999999999999999887755
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.. + -...|+..|-+++.+.
T Consensus 461 ~~-------g-------~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 461 QQ-------E-------DIDEAITLFEESADLA 479 (514)
T ss_dssp HT-------T-------CHHHHHHHHHHHHHHC
T ss_pred Hh-------c-------CHHHHHHHHHHHHHhc
Confidence 31 1 2347888888888875
No 100
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.46 E-value=0.18 Score=60.10 Aligned_cols=139 Identities=13% Similarity=0.074 Sum_probs=102.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHH------------HHHHHHHHHhcCCcchHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQV------------MYAYLKYQWSLGEDLKRKE 1634 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v------------~~~~ak~lw~~g~~~~~~~ 1634 (1880)
.+...|...+.+..+.|+++.|...+.++....|.. +.. .+..+..+...|+ ..+
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~ 252 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH----------KRCFAHYKQVKKLNKLIESAEELIRDGR---YTD 252 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----------hHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHH
Confidence 557899999999999999999999999988765531 222 1233566777774 689
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000194 1635 AFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1880)
Q Consensus 1635 Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1880)
|+..+++.+.... .+.....+.+..+|...... ...++.+..|..+++.+|+...+
T Consensus 253 A~~~~~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 253 ATSKYESVMKTEP------------------SVAEYTVRSKERICHCFSKD------EKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHCC------------------SSHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCC------------------CchHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCcccHHH
Confidence 9999988765321 12334556666677666554 35789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
|+..|...... .-...|+..|-+++.+.
T Consensus 309 ~~~~~~~~~~~--------------g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 309 LKDRAEAYLIE--------------EMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhcC
Confidence 99999876541 12357899999998875
No 101
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.45 E-value=0.27 Score=66.52 Aligned_cols=187 Identities=12% Similarity=0.059 Sum_probs=105.3
Q ss_pred hHHHHHHHhCCCCH-hHHHH-HHHHHHhhhcCCcccccHHHHHHHHHHHHHHhc-CCCChHhHHHHHHHHHHHHH-hCcc
Q 000194 600 CLSAIFAALNDEDF-DVREY-AISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SSADNKCREESAKLLGCLIR-NCER 675 (1880)
Q Consensus 600 ~l~~L~~~l~D~~~-~VR~~-a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~-~~~~~~~r~~a~~~L~~l~~-~~~~ 675 (1880)
+++.|+...++++. ++... |..++..++.... .+.....++..+..+.. + .++ .|..++..+..+.- +.--
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~---~~~~~~~~l~~l~~~~~~s-~sW-~R~~~L~~lq~~~f~n~f~ 835 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPI---RKNHVAAIVDYVCSSNVAL-SSN-QTKLQLAFIQHFLSAELLQ 835 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCC---CHHHHHHHHHHSSCTTTTS-CSS-SHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHhcC-CcH-HHHHHHHHHHHHHHHHHHH
Confidence 45555555555543 55555 5666766664331 22222222233332222 3 567 88888887766663 3322
Q ss_pred cccCchHHHHHHHHHHhccCCCCCCC-hhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhc-----------CCc
Q 000194 676 LIRPYIAPIHKALVARLLEGTGINAN-NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD-----------GAA 743 (1880)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~-~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d-----------~~~ 743 (1880)
....-...|.+.++..|.|+ . .+|++.+..+|+-+....+. ......++..+.+.+.. ..+
T Consensus 836 l~~~~~~~i~~~v~~~L~D~-----q~~EVRe~Aa~tLsgll~c~~~--~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~ 908 (997)
T 1vsy_5 836 LTEEEKNKILEFVVSNLYNE-----QFVEVRVRAASILSDIVHNWKE--EQPLLSLIERFAKGLDVNKYTSKERQKLSKT 908 (997)
T ss_dssp SCTTHHHHTHHHHTTTTTCS-----SCHHHHHHHHHHHHHHHHSCCS--HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHHcCCc--hhhHHHHHHHHHHHHhhcccccccccccchH
Confidence 22233356778888888875 7 88999999999988765412 01111233333322211 011
Q ss_pred hhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000194 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1880)
Q Consensus 744 ~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~ 800 (1880)
...|..|+.+||.++....+.+-|..-.|+++..|.+.+.++ ..++..+=++++.
T Consensus 909 ~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~--~~i~~tvk~tlse 963 (997)
T 1vsy_5 909 DIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTS--GMTGNAAKNTISE 963 (997)
T ss_dssp CHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSC--SSHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCC--CchHHHHHHHHHH
Confidence 247889999999999998776422333466666555555442 3477777677665
No 102
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.44 E-value=0.0063 Score=72.82 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=145.5
Q ss_pred hhhhhhHHHHHhHhhccccCcchhHHH---HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCc-hhHHH-HHHHHH
Q 000194 83 AAENLGALRAIDELIDVALGENASKVS---KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT-ADEVE-FQVKMA 157 (1880)
Q Consensus 83 ~~~r~~~i~ai~~Li~~~~~~~~~~~~---~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~-~~~v~-~~~~~~ 157 (1880)
...|..|..++..|.... .+....+. -+.+.|..++. +++.++...|+++|..|+....... ..+++ .-++.+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHTSSC-HHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 445777888888886432 11222231 23566777775 6789999999999999986311111 12222 246666
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc--hHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHhhhchh
Q 000194 158 LDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH--VAEFVDAIWVALRDPTL----AVRERAVEALRACLRVIEKRETR 231 (1880)
Q Consensus 158 ~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~--l~~i~~~i~~~l~D~~~----~VR~aA~~al~~~~~~i~~r~~~ 231 (1880)
++.|....+...+..|+.+|..|+.+++..=... ....++.+...|+++++ .|++.|+.+|+.+...+...+ .
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~ 254 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-D 254 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH-H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH-H
Confidence 7665433445566778888888987554321111 24678888899987665 489999999988765432111 1
Q ss_pred hHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000194 232 WRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1880)
Q Consensus 232 ~~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~--~i~~~ll~~~~~~~~~Vr~~~~~~i~~l 308 (1880)
.+.... ...++.+..-|.+++ .+++..|+.+|..|.....+.. ..+. ..++.+..+++++++.+|+.++.+|..|
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~-~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHH-HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCC-hHHHHHHHHHHHHHhCCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 222221 235677777777664 5778888888888764322221 1221 2466777778889999999999999999
Q ss_pred hhhChhhH
Q 000194 309 AHFLRDRF 316 (1880)
Q Consensus 309 a~~~~~~f 316 (1880)
+...+...
T Consensus 333 ~~~~~~~~ 340 (354)
T 3nmw_A 333 MANRPAKY 340 (354)
T ss_dssp HTTCCGGG
T ss_pred HcCCHHHH
Confidence 98877643
No 103
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.35 E-value=0.077 Score=62.67 Aligned_cols=266 Identities=14% Similarity=0.050 Sum_probs=160.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHhHHHHHHHHHHHc
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT--PAEPAARLEMAPMAANAAWNM 1440 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~~~~~~a~aaw~l 1440 (1880)
.+-..|+|++|+..|++.+...++. ......+..|+..+|+|+......+.... +.... .....+.+.+..
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 103 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV----SWFAVGCYYLMV 103 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----HHHHHHHHHHHh
Confidence 3556699999999999988754433 23456688999999999888766654321 11111 122345677778
Q ss_pred C-ChhhHHHHHhhc-CCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhh
Q 000194 1441 G-EWDQMAEYVSRL-DDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYC 1518 (1880)
Q Consensus 1441 ~-~Wd~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~ 1518 (1880)
| +|+.-..+.... ...+ .. ...+..+-.+ .....+.++.+++
T Consensus 104 ~~~~~~A~~~~~~a~~~~~----------------~~-~~~~~~l~~~------------------~~~~~~~~~A~~~- 147 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLEK----------------TY-GPAWIAYGHS------------------FAVESEHDQAMAA- 147 (330)
T ss_dssp CSCHHHHHHHHHHHHTTCT----------------TC-THHHHHHHHH------------------HHHHTCHHHHHHH-
T ss_pred hhhHHHHHHHHHHHHHhCC----------------cc-HHHHHHHHHH------------------HHHccCHHHHHHH-
Confidence 8 787665554432 1110 00 1111110000 0011112222211
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 000194 1519 TLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQY 1598 (1880)
Q Consensus 1519 ~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~ 1598 (1880)
+. +.+.. .| .+...|...+.+..+.|+++.|...+.++...
T Consensus 148 -------------------~~--------------~a~~~-----~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 148 -------------------YF--------------TAAQL-----MK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp -------------------HH--------------HHHHH-----TT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -------------------HH--------------HHHHh-----cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 11 00000 01 23456777888999999999999999999877
Q ss_pred CCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHH
Q 000194 1599 DPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKL 1678 (1880)
Q Consensus 1599 ~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l 1678 (1880)
.|. .+.+....+.++...|+ ..+|+..+++.+......... ......+.++..+
T Consensus 189 ~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~l 242 (330)
T 3hym_B 189 APE----------DPFVMHEVGVVAFQNGE---WKTAEKWFLDALEKIKAIGNE-------------VTVDKWEPLLNNL 242 (330)
T ss_dssp CTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTTSCS-------------CTTTTCCHHHHHH
T ss_pred CCC----------ChHHHHHHHHHHHHccc---HHHHHHHHHHHHHHhhhcccc-------------ccccHHHHHHHHH
Confidence 552 46778888999999995 689999999877654321110 0001112334445
Q ss_pred hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1679 g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
|...... ...++....|+++++.+|+...+|..+|..+...= -...|++.|-+++.+.
T Consensus 243 a~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------------~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 243 GHVCRKL------KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG--------------NFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHT------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT--------------CHHHHHHHHHTTTTTC
T ss_pred HHHHHHh------cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc--------------cHHHHHHHHHHHHccC
Confidence 5544433 24678899999999999999999999998766421 2346888888887764
No 104
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.33 E-value=0.014 Score=72.07 Aligned_cols=228 Identities=11% Similarity=0.042 Sum_probs=144.9
Q ss_pred hhhhhHHHHHhHhhccccCcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCc-hhHHH-HHHHHHH
Q 000194 84 AENLGALRAIDELIDVALGENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT-ADEVE-FQVKMAL 158 (1880)
Q Consensus 84 ~~r~~~i~ai~~Li~~~~~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~-~~~v~-~~~~~~~ 158 (1880)
..+..|..++..|.... .+....+ .-+.+.|..++. ++|.++...|+++|+.|+....... ..+++ .-++.++
T Consensus 215 ~l~~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV 292 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 292 (458)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-cccHHHHHHcCCcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHH
Confidence 34666777777776432 1122223 123566777775 6789999999999999976311111 22232 2567777
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHhhcCccchhc--hHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHhhhchhh
Q 000194 159 DWLRGDRVEYRRFAAVLILKEMAENASTVFNVH--VAEFVDAIWVALRDPTL----AVRERAVEALRACLRVIEKRETRW 232 (1880)
Q Consensus 159 ~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~--l~~i~~~i~~~l~D~~~----~VR~aA~~al~~~~~~i~~r~~~~ 232 (1880)
+.|....+...+..|+.+|..|+.+++..=... ....++.++..|.+++. .|++.|+.+|+.+..++...+ ..
T Consensus 293 ~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~~ 371 (458)
T 3nmz_A 293 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-DH 371 (458)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH-HH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH-HH
Confidence 765544455667788888999987553321111 24678888888887665 489999999988765432111 12
Q ss_pred HHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 233 RVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 233 ~~~~~-~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
+.... ...++.+..-|.+++ .+++..|+.+|..+.....+....-.+ ..++.++.+++++++.+|+.++.+|..|+.
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSC-HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 22222 245677777777664 577888888888887433322211111 246677777888999999999999999998
Q ss_pred hChhh
Q 000194 311 FLRDR 315 (1880)
Q Consensus 311 ~~~~~ 315 (1880)
..|..
T Consensus 451 ~~p~k 455 (458)
T 3nmz_A 451 NRPAK 455 (458)
T ss_dssp CCSCC
T ss_pred CCHhh
Confidence 77754
No 105
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.30 E-value=0.0087 Score=71.60 Aligned_cols=222 Identities=9% Similarity=-0.007 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHHHhhhCCCCchhHH---HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch--HHHHHHH
Q 000194 125 REILVLASKVLGHLARAGGAMTADEV---EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAI 199 (1880)
Q Consensus 125 ~~v~~~aa~~l~~L~~~~g~~~~~~v---~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l--~~i~~~i 199 (1880)
.++.+.|+++|..|+..... ....+ ...++.+++.|.+ .+...+..|+.+|+.|+.+........+ ...+|.+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 67899999999999864211 22223 2348888888864 4456788889999999875211112222 2457777
Q ss_pred HHHh-cCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHH--HHHHHHHHhhccCCCCh---hHHHHHHHHHHHHHH---c
Q 000194 200 WVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPV---HSIHGSLLAVGELLR---N 270 (1880)
Q Consensus 200 ~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~~l~~~~~~l~~~~~~---~~~~~al~~l~~ll~---~ 270 (1880)
+..| +.+++.+++.|+.||..+... ....+.... ...++.+..-|.++++. +++..|+-+|..|.. .
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~----~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 251 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAH----CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcc----ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC
Confidence 7764 567889999999998876541 111223332 34666666666654322 467777777777764 2
Q ss_pred chhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHH
Q 000194 271 TGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIAL 345 (1880)
Q Consensus 271 ~~~~~~~~~~--~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~--r~~a~~al 345 (1880)
..+. ...+. ..++.++..+.+.+..+++.++.+|..++..+++.- .... ...++.|...|+..+. |..|..+|
T Consensus 252 ~~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 252 NEDH-RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp CHHH-HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH-HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred CHHH-HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2221 12222 256778888889999999999999999986555421 1111 3568888888876543 67899999
Q ss_pred HHHHhhchh
Q 000194 346 GEMAGALDG 354 (1880)
Q Consensus 346 g~la~~v~~ 354 (1880)
.+++..-+.
T Consensus 330 ~nL~~~~~~ 338 (354)
T 3nmw_A 330 RNLMANRPA 338 (354)
T ss_dssp HHHHTTCCG
T ss_pred HHHHcCCHH
Confidence 999877554
No 106
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.054 Score=68.89 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=82.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh---cCCcchHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS---LGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~---~g~~~~~~~Al~~L~~~~ 1643 (1880)
.+...|...+.+..+.|+++.|...+.++....+.... ........+..+..+.. .| +..+|+..++..+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~---~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG----IYVGIAPLVGKATLLTRNPTVE---NFIEATNLLEKAS 442 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS----CSSCSHHHHHHHHHHHTSCCTT---HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch----HHHHHHHHHHHHHHHhhhhhcC---CHHHHHHHHHHHH
Confidence 34678999999999999999999999888765442110 00113467778888888 77 4689999998876
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
..... ...++..+|.-.... ...++....|+++.+++|+...+|......
T Consensus 443 ~~~~~----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 443 KLDPR----------------------SEQAKIGLAQMKLQQ------EDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHCTT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HhCcc----------------------cHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 53110 112333344433332 235778899999999999999998876544
No 107
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0012 Score=76.90 Aligned_cols=187 Identities=11% Similarity=0.065 Sum_probs=123.7
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCcc-----chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc--hhhHHH
Q 000194 163 GDRVEYRRFAAVLILKEMAENASTV-----FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TRWRVQ 235 (1880)
Q Consensus 163 ~~~~~~~R~aA~~~l~~la~~~p~~-----l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~ 235 (1880)
.+++|..|.+|+.-+..+....+.. ....+..+.+.+-..+.|++..|...|++++..++....... ......
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~ 98 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNIT 98 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Confidence 5789999999999998887765432 223345556667788899999999999999988765432111 112234
Q ss_pred HHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhh-hCh
Q 000194 236 WYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAH-FLR 313 (1880)
Q Consensus 236 ~~~~~l~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~-~~~ 313 (1880)
+...+++.+... ++++. ..++..++.++-.+++.... ...+.+.++..+++++|.+|..++..|..+.. |..
T Consensus 99 ~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 566777877764 77764 45666777676666653321 12345666777899999999999888887643 333
Q ss_pred hhH-HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000194 314 DRF-VTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1880)
Q Consensus 314 ~~f-~~~yl~~~~~~Ll~~L~~~~--~r~~a~~alg~la~~v~~~ 355 (1880)
... ....++.+++.+...|.+.+ .|..|..+++.+-..+|..
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 221 22356777888888886543 6999999999999999864
No 108
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.11 E-value=0.02 Score=61.07 Aligned_cols=186 Identities=17% Similarity=0.190 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000194 22 SLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1880)
Q Consensus 22 ~~~~~~~l~~~l~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~ 100 (1880)
+.+.+.-++.-|.++++..+ +|-..|.+.+ ++++..--..-+..+.+.|.++++++|-..-.-|+-+++.|++.-
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~Leell----K~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEIL----KRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH----HHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHH----HhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 45567777777777765444 4655555555 343332222333445555667887777766677888888887652
Q ss_pred cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHH
Q 000194 101 LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180 (1880)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~l 180 (1880)
.-.++...+..+.+..++. .++.-....|++.+|.+ . .....+..+...++.+ ..++...+.+|+.++.++
T Consensus 107 -pL~~~~y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl-k-----v~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 107 -PMGSKTFLKAAKTLVSLLE-SPDDMMRIETIDVLSKL-Q-----PLEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp -CBCHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC-C-----BSCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhCcC-C-----cccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHh
Confidence 1135566778899999986 77888999999999998 2 2222334444555555 667778899999999999
Q ss_pred HhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 181 a~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
+..+.+ ...+..|+..|-..|+.+++.+++-|..++..++
T Consensus 178 a~~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 178 LNSSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp GGGCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred hcccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 986543 1345566666777888889999999998876554
No 109
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.97 E-value=0.0071 Score=72.14 Aligned_cols=220 Identities=15% Similarity=0.132 Sum_probs=141.4
Q ss_pred HhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000194 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1880)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1880)
+..-+.++.+++|.-||.+++.++.....+. ++.. ..+.|--+|...+-+|.
T Consensus 179 L~~DLFdp~WEiRHGAALGLREILR~hG~GA-------GR~~---------------------~~N~DLAvRLLCVLALD 230 (800)
T 3oc3_A 179 ISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-------DIQI---------------------RVDSKLFSKIYEILVTD 230 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CCC---------------------CCCTTHHHHHHHHHHHB
T ss_pred HHHHhcCcchhhhhHHHHHHHHHHHHhccCC-------ceec---------------------cccHHHHHHHHHHHHhc
Confidence 3344667899999999999999886543211 1110 01113345555555663
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCC-CHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 587 GNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 587 ~~~~fd~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
+|..|.+ |. ...||+++.++||.+ .+.|.. .. ++.+++..+ .. ..++.|.-++-.
T Consensus 231 ---RFGDYVS-------------DqVVAPVRETaAQtLGaL-~hLp~e-~~----IL~qLV~~l-~~-~~WEVRHGGLLG 286 (800)
T 3oc3_A 231 ---KFNDFVD-------------DRTVAPVRDAAAYLLSRI-YPLIGP-ND----IIEQLVGFL-DS-GDWQVQFSGLIA 286 (800)
T ss_dssp ---CCBBCSS-------------SSCBCHHHHHHHHHHHHH-TTTSCS-CC----HHHHHTTGG-GC-SCHHHHHHHHHH
T ss_pred ---ccccccc-------------CeeeeehHHHHHHHHHHH-HhCChh-HH----HHHHHHhhc-CC-CCeeehhhhHHH
Confidence 6766553 43 457999999999999 777765 22 333444333 33 568888776666
Q ss_pred HHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchh
Q 000194 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
|--+ .+.+.. ++.+++.++..+.+. +.+|+..++.++-.++ ....++.++..+-+.|.+.++..
T Consensus 287 LKYL----~DLL~~-Ld~Vv~aVL~GL~D~-----DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLS 350 (800)
T 3oc3_A 287 LGYL----KEFVED-KDGLCRKLVSLLSSP-----DEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELIS 350 (800)
T ss_dssp HHHT----GGGCCC-HHHHHHHHHHHTTCS-----SHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCC
T ss_pred HHHH----HHHHHH-HHHHHHHHHhhcCCc-----ccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccc
Confidence 5544 444444 789999999999985 7889888777765554 23457788888888887543322
Q ss_pred -hHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000194 746 -KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1880)
Q Consensus 746 -~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg 799 (1880)
.......-|+.++...... ...|.+++.|..+++.. -..||.++++++-
T Consensus 351 ASTgSVMdLLAkL~s~p~~a----~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~ 400 (800)
T 3oc3_A 351 VSKTSNLSLLTKIYRENPEL----SIPPERLKDIFPCFTSP-VPEVRTSILNMVK 400 (800)
T ss_dssp TTHHHHHHHHHHHHHHCTTC----CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHcCCccc----ccChHHHHHHHhhhcCC-cHHHHHHHHHHHH
Confidence 2233455666777655321 12367888888888765 6799999999864
No 110
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.94 E-value=0.055 Score=57.85 Aligned_cols=170 Identities=17% Similarity=0.212 Sum_probs=125.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
|....|..++...++.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++......
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN----------NVETLLKLGKTYMDIGL---PNDAIESLKKFVVLD 69 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 55788999999999999999999999999988763 46778888999999995 678998888765432
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. .+.++..+|...... ...+.....|.++.+.+|+...+|+..|......
T Consensus 70 ~~----------------------~~~~~~~~~~~~~~~------~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~- 120 (184)
T 3vtx_A 70 TT----------------------SAEAYYILGSANFMI------DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM- 120 (184)
T ss_dssp CC----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred ch----------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-
Confidence 11 123344555554443 3467888999999999999999999998776541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|++.|-+++... + ........+=.+++..|..++..+.+++.+..=|
T Consensus 121 -------------g~~~~A~~~~~~~l~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 121 -------------GEHDKAIEAYEKTISIK-----P-GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp -------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred -------------CCchhHHHHHHHHHHhc-----c-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 12347899999999885 2 3345566677778888888877777777665433
No 111
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.88 E-value=0.0099 Score=71.91 Aligned_cols=162 Identities=12% Similarity=0.139 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000194 1695 PEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1880)
Q Consensus 1695 ~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1880)
+++++.|+.+..+++.+..+|-.+|....+ | ..+-+...++.|...|...+--.-+ ...+--+-+..
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~k----y--------~p~k~~ehl~~~~~~ini~k~~~~~-~~~~~w~e~~~ 290 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSK----F--------KPQKMREHLELFWSRVNIPKVLRAA-EQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHT----T--------CHHHHHHHHHHHSTTSCHHHHHHHH-HTTTCHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHh----c--------CHHHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHHH
Confidence 577888899998988888888888766543 2 1234556666775444331000000 11122344566
Q ss_pred HHHhcCCcHHHHHHHHhcc-cCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHH
Q 000194 1775 LWFNHGATEEVQIALQKGF-AHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLR 1853 (1880)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~-~~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~~~~R 1853 (1880)
|.+.++.......+|.++. ..=....|..+| ...... .+....+.=....||..+-.-|+++..--+..|
T Consensus 291 ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~----~kv~n~-----elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r 361 (449)
T 1b89_A 291 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDII----TKVANV-----ELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTR 361 (449)
T ss_dssp HHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHH----HHCSST-----HHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHH
T ss_pred HHHhhchHHHHHHHHHhCChhhhhhHHHHHHH----hchhHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHH
Confidence 7778888766666666653 223334444443 333332 334444444448999998888888866556655
Q ss_pred HH----------HHHHHHHHHhhcccccccccccc
Q 000194 1854 RA----------AAQEVVDKVRQHSGVLVDQSCYT 1878 (1880)
Q Consensus 1854 ~~----------~a~~Il~~~~~~~~~lv~~a~~~ 1878 (1880)
.- -.+.=|...+.++..-|++|+-+
T Consensus 362 ~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~ 396 (449)
T 1b89_A 362 AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNN 396 (449)
T ss_dssp HHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 42 23444556666677777777543
No 112
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.84 E-value=0.037 Score=59.05 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=130.7
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccc-cHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcccc
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1880)
+.+..|+..++|++..|+..|+.+++.+.+..|... .+.+.+++..++.-+ .+ .+.+..-.|+++|+.+.+..+-.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll-k~-~dEkval~A~r~L~~LLe~vpL~- 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL-SQ-ENEKVTIKALRALGYLVKDVPMG- 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC-CS-TTHHHHHHHHHHHHHHHTTCCBC-
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-hc-cchhHHHHHHHHHHHHHcCCCCC-
Confidence 568888899999999999999999999999876543 244455555555444 33 56777788999999999876522
Q ss_pred cCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
..-+..++..+...+.++ +.-+...+...+|.+ ......+.++..+...+. +.+..++.+|+.+|-.+
T Consensus 110 ~~~y~Kl~~aL~dlik~~-----~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~-Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESP-----DDMMRIETIDVLSKL------QPLEDSKLVRTYINELVV-SPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp HHHHHHHHHHHHHHTTSC-----CHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-----CchHHHHHHHHhCcC------CcccchHHHHHHHHHHHh-CCChhHHHHHHHHHHHh
Confidence 223456777777777753 666677777777766 233445677777777774 45678899999999999
Q ss_pred HhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
+..++.. .....++.-+-.+|+++ ++.++..|+-.+-.+
T Consensus 178 a~~S~D~----~i~~~I~~eI~elL~~e-D~~l~e~aLd~Le~i 216 (265)
T 3b2a_A 178 LNSSADS----GHLTLILDEIPSLLQND-NEFIVELALDVLEKA 216 (265)
T ss_dssp GGGCSSC----CCGGGTTTTHHHHHTCS-CHHHHHHHHHHHHHH
T ss_pred hcccCCH----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 9888753 11234555666677666 889999888777655
No 113
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.57 E-value=0.00084 Score=68.01 Aligned_cols=116 Identities=17% Similarity=0.188 Sum_probs=71.1
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000194 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1880)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1880)
..+...++++++.+|..|+.+++.+- . .. + +.|+ ..+.|+++.||..++.+
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~---------------------~--~~-~----~~L~-~~L~d~~~~vR~~A~~a 65 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMG---------------------D--EA-F----EPLL-ESLSNEDWRIRGAAAWI 65 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCS---------------------S--TT-H----HHHH-HGGGCSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC---------------------c--hH-H----HHHH-HHHcCCCHHHHHHHHHH
Confidence 34456778888889877654433211 0 01 2 2233 24678999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHH
Q 000194 585 LYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1880)
Q Consensus 585 l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1880)
|+. + ..++.++.|..+++|+++.||..|+..|+++.. + ...|. ++..+ .+ ++..+|..|+.
T Consensus 66 L~~---~----~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~-~a~~~-------L~~~l-~d-~~~~vr~~A~~ 126 (131)
T 1te4_A 66 IGN---F----QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E-RVRAA-------MEKLA-ET-GTGFARKVAVN 126 (131)
T ss_dssp HGG---G----CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H-HHHHH-------HHHHT-TS-CCTHHHHHHHH
T ss_pred HHh---c----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H-HHHHH-------HHHHH-hC-CCHHHHHHHHH
Confidence 852 1 224567888888899999999999999998763 1 11121 22223 33 56788888887
Q ss_pred HHHH
Q 000194 665 LLGC 668 (1880)
Q Consensus 665 ~L~~ 668 (1880)
.|+.
T Consensus 127 aL~~ 130 (131)
T 1te4_A 127 YLET 130 (131)
T ss_dssp HGGG
T ss_pred HHHh
Confidence 7653
No 114
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.53 E-value=0.27 Score=59.08 Aligned_cols=117 Identities=15% Similarity=0.096 Sum_probs=87.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++...+|. .+.+....+.++...|+ ..+|+..+++.+....
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN----------DYLLWNKLGATLANGNQ---SEEAVAAYRRALELQP 282 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 5788889999999999999999999998876542 36777888889999995 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc-----------hHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW-----------GKAWH 1716 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~-----------~k~w~ 1716 (1880)
. ...-...++.+|...|+ .++....|+++++++|+. ..+|.
T Consensus 283 ~---------------~~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 283 G---------------YIRSRYNLGISCINLGA-------------HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp T---------------CHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred C---------------cHHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 0 00111234555555544 467889999999999887 78999
Q ss_pred HHHHHHHHH
Q 000194 1717 SWALFNTAV 1725 (1880)
Q Consensus 1717 ~wA~~n~~~ 1725 (1880)
..|..+..+
T Consensus 335 ~l~~~~~~~ 343 (368)
T 1fch_A 335 TLRLALSML 343 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888876653
No 115
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.38 E-value=0.13 Score=56.85 Aligned_cols=168 Identities=16% Similarity=0.219 Sum_probs=122.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+..-.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ----------DPEALYWLARTQLKLGL---VNPALENGKTLVARTP 70 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 4578899999999999999999999999887663 47788889999999995 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHH-----------hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKL-----------GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWH 1716 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~l-----------g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~ 1716 (1880)
. ...-...++.++... |+ .++.+..|+++++++|++..+|.
T Consensus 71 ~---------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~-------------~~~A~~~~~~al~~~P~~~~~~~ 122 (217)
T 2pl2_A 71 R---------------YLGGYMVLSEAYVALYRQAEDRERGKGY-------------LEQALSVLKDAERVNPRYAPLHL 122 (217)
T ss_dssp T---------------CHHHHHHHHHHHHHHHHTCSSHHHHHHH-------------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred C---------------cHHHHHHHHHHHHHhhhhhhhhcccccC-------------HHHHHHHHHHHHHhCcccHHHHH
Confidence 0 011123456666666 54 46788999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000194 1717 SWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1880)
Q Consensus 1717 ~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1880)
..|...... .-...|+..|-+++.+. ........+-.+++..|..++....+++.+..-
T Consensus 123 ~lg~~~~~~--------------g~~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 123 QRGLVYALL--------------GERDKAEASLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHHHT--------------TCHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHc--------------CChHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 998775531 12347899999998873 223344556666777788777666666665433
Q ss_pred C
Q 000194 1797 N 1797 (1880)
Q Consensus 1797 p 1797 (1880)
|
T Consensus 182 P 182 (217)
T 2pl2_A 182 P 182 (217)
T ss_dssp T
T ss_pred C
Confidence 3
No 116
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.33 E-value=0.048 Score=71.99 Aligned_cols=163 Identities=15% Similarity=0.158 Sum_probs=121.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++.+.|..++.+.++.|+++.|...+.++...+|. .+...+..+..+..+|+ ..+|+..+++.+.-
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----------~~~a~~nLg~~l~~~g~---~~eA~~~~~~Al~l- 72 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE----------FAAAHSNLASVLQQQGK---LQEALMHYKEAIRI- 72 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-
Confidence 35788999999999999999999999999988763 46777888899999995 68999999887642
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. -.+.++..+|.-..++ ...++.++.|++|++++|++..+|+.+|....+.
T Consensus 73 ~P---------------------~~~~a~~nLg~~l~~~------g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~- 124 (723)
T 4gyw_A 73 SP---------------------TFADAYSNMGNTLKEM------QDVQGALQCYTRAIQINPAFADAHSNLASIHKDS- 124 (723)
T ss_dssp CT---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred CC---------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence 10 1244566666666554 3468899999999999999999999999775541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHH
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQ 1790 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~ 1790 (1880)
.-...|+..|-+++.+.+ ........+-.++...|+..+..+.++
T Consensus 125 -------------g~~~eAi~~~~~Al~l~P------~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 125 -------------GNIPEAIASYRTALKLKP------DFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp -------------TCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHhCC------CChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 123478999999999852 334556666777777777665444433
No 117
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.29 E-value=1.1 Score=50.20 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------DARGYSNRAAALAKLMS---FPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----------cHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCH
Confidence 4678899999999999999999999998876552 36777888888888885 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc------ccchHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA------TKWGKAWHSWAL 1720 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~------~~~~k~w~~wA~ 1720 (1880)
..+.++..+|...... ...++....|+++.+++ |+...+|...+.
T Consensus 205 ----------------------~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 205 ----------------------NFVRAYIRKATAQIAV------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp ----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 0133455555555543 24678889999999999 777777766553
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.28 E-value=0.091 Score=56.89 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=94.6
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhh-hCCCCch
Q 000194 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLAR-AGGAMTA 147 (1880)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~-~~g~~~~ 147 (1880)
++......|.+++....|..|+.+|..+ .. .....+.++..++.+..=.|++.++.+++.++. .+...
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 4455566788888888999999988877 31 134667777755544456899999999999986 43222
Q ss_pred hHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 000194 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1880)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1880)
.++...+|..++..+.||.|+.... --+.. | .+......+++.|-....|++..||.+-+.+|+.+.
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~r-pW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLR-IWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTC-SGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhH-HHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 2556778998777776665544332 22221 3 345666778888888888999999999999998754
No 119
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.24 E-value=0.33 Score=56.99 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++...+|. .+......+.++...|+ ..+|+..+++.+....
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD----------DAQLWNKLGATLANGNR---PQEALDAYNRALDINP 237 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC
Confidence 4678888999999999999999999998876542 36777888889988885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc------------chHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK------------WGKAW 1715 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~------------~~k~w 1715 (1880)
. ...++..+|...... ...++....|+++++.+|+ ...+|
T Consensus 238 ~----------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 238 G----------------------YVRVMYNMAVSYSNM------SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred C----------------------CHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 0 122333444443332 2357788999999999998 78888
Q ss_pred HHHHHHHHH
Q 000194 1716 HSWALFNTA 1724 (1880)
Q Consensus 1716 ~~wA~~n~~ 1724 (1880)
..+|.....
T Consensus 290 ~~l~~~~~~ 298 (327)
T 3cv0_A 290 DFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
No 120
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.22 E-value=0.75 Score=57.66 Aligned_cols=326 Identities=12% Similarity=0.106 Sum_probs=160.0
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHcCCC--CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC--CChhh
Q 000194 10 YIGPPAPGAGGGSLDALNRILADLCTHG--NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES--NDAAE 85 (1880)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~l~s~~--~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s--~~~~~ 85 (1880)
+.|++.+|+++.+.+.+.++.+.|.+.. +++|.|..+|+.+- |+...+-...-++.|. ..++. .|.+.
T Consensus 7 ~~g~~~~~~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s----k~y~~~Vg~~~l~~li----~~L~~d~~D~e~ 78 (651)
T 3grl_A 7 VMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLS----KKYRLEVGIQAMEHLI----HVLQTDRSDSEI 78 (651)
T ss_dssp -----------CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTT----TTTTTHHHHHTHHHHH----HHHHSCTTCHHH
T ss_pred hhCCCCCCCCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHH----HHhHHHhhhhhHHHHH----HHHhcccccHHH
Confidence 4667777888999999999999998775 46666888777763 4433332222122222 22221 34443
Q ss_pred hhhHHHHHhHhhccccCcch--------h-HHH----------HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCc
Q 000194 86 NLGALRAIDELIDVALGENA--------S-KVS----------KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT 146 (1880)
Q Consensus 86 r~~~i~ai~~Li~~~~~~~~--------~-~~~----------~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~ 146 (1880)
=.+.+-.+-.+......+.. . .-- .....|..++. ..|..++-.+.+.|..|....+...
T Consensus 79 v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~ 157 (651)
T 3grl_A 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQV 157 (651)
T ss_dssp HHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHH
Confidence 44444444333322211000 0 001 11234556665 6789999999999999988744322
Q ss_pred hh-HHH--HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc--chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 000194 147 AD-EVE--FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV--FNVHVAEFVDAIWVALRDPTLAVRERAVEALRAC 221 (1880)
Q Consensus 147 ~~-~v~--~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~--l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~ 221 (1880)
.+ ++. .-+.+++..|. ++++..|-.|+.+|.+|+.+.+.. +. -+...++.++..+++... ++ +..+...|
T Consensus 158 Q~~Il~~p~gi~~Lv~lL~-d~rE~iRneallLL~~Lt~~n~~iQklV-AFEnaFe~Lf~Ii~~Eg~-~~--Ggivv~DC 232 (651)
T 3grl_A 158 QQIILVSPMGVSRLMDLLA-DSREVIRNDGVLLLQALTRSNGAIQKIV-AFENAFERLLDIITEEGN-SD--GGIVVEDC 232 (651)
T ss_dssp HHHHHHSTTHHHHHHGGGG-CSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHHTG-GG--SHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCHHHHHHH-HHhccHHHHHHHHHhcCC-Cc--cchhHHHH
Confidence 23 221 36777777775 456889999999999999987752 11 122345555555554333 11 11222233
Q ss_pred HHHHhh--hc-hhhHHHHHH-HHHHHHHhhccCCC---Ch-----hHHHHHHHHHHHHHHcchhh--hHHHHHH-----H
Q 000194 222 LRVIEK--RE-TRWRVQWYY-RMFEATQDGLGRNA---PV-----HSIHGSLLAVGELLRNTGEF--MMSRYRE-----V 282 (1880)
Q Consensus 222 ~~~i~~--r~-~~~~~~~~~-~~l~~~~~~l~~~~---~~-----~~~~~al~~l~~ll~~~~~~--~~~~~~~-----i 282 (1880)
+.++.+ |. +..+..+.. .+++.+..-+.... .| ....+++.+++-|+...+.. ...+-.. +
T Consensus 233 L~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~ 312 (651)
T 3grl_A 233 LILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL 312 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence 333322 11 112222211 23333333333221 12 22344555555555432210 1111111 3
Q ss_pred HHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChh---hHHHH---H---HHHHHHHHHHhhcCC---CCcchHHHHHHHH
Q 000194 283 AEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRD---RFVTN---Y---LKICMNHILTVLRIP---AERDSGFIALGEM 348 (1880)
Q Consensus 283 ~~~ll~~~~~~--~~~Vr~~~~~~i~~la~~~~~---~f~~~---y---l~~~~~~Ll~~L~~~---~~r~~a~~alg~l 348 (1880)
+..+++..-.. ...|+..++.+++.+..-++. .|.+. + .+.++..|+..+.+. ..|.+|+.|+...
T Consensus 313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 313 LQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 34455554433 567899999999998875542 33321 0 022343344444321 2377777777765
Q ss_pred H
Q 000194 349 A 349 (1880)
Q Consensus 349 a 349 (1880)
.
T Consensus 393 ~ 393 (651)
T 3grl_A 393 L 393 (651)
T ss_dssp H
T ss_pred H
Confidence 4
No 121
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.16 E-value=0.0067 Score=61.26 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=79.5
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
.+.|+++.+|..++.+|.. +.. + .++.|..+++|+++.||..|+..||.+.. + ...|.+ +..
T Consensus 20 ~L~~~~~~vR~~A~~~L~~---~~~----~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~-~a~~~L-------~~~ 81 (131)
T 1te4_A 20 HMADENKWVRRDVSTALSR---MGD----E-AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E-RAVEPL-------IKL 81 (131)
T ss_dssp -CCSSCCCSSSSCCSSTTS---CSS----T-THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H-HHHHHH-------HHH
T ss_pred HhcCCCHHHHHHHHHHHHH---hCc----h-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H-HHHHHH-------HHH
Confidence 4689999999999998862 111 1 25788889999999999999999999864 1 112222 222
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHH
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGD 714 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~ 714 (1880)
+.+ +++.+|..|++.|+.+.. +..++.|+..++++ ++.|+..+..+++.
T Consensus 82 L~d--~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-----~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 82 LED--DSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-----TGFARKVAVNYLET 130 (131)
T ss_dssp HHH--CCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-----CTHHHHHHHHHGGG
T ss_pred HcC--CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-----CHHHHHHHHHHHHh
Confidence 333 578999999999998741 34567777777754 77888888877653
No 122
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.15 E-value=0.14 Score=60.48 Aligned_cols=275 Identities=15% Similarity=0.107 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHHhhhChHHHHH-HHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc
Q 000194 43 ASLALRKHIEEQARDLGGEAFSR-FMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV 121 (1880)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~~-~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~ 121 (1880)
....+.+++--. +.++.|.+ ....+.-.+.+++.++|...|+-+-+++..+.... .+. .-..|.+.+=+.
T Consensus 44 c~~~l~kll~l~---~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~----iLv~Nsl~kDl~- 114 (355)
T 3tjz_B 44 CAHILTKILYLI---NQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDV----IIVTSSLTKDMT- 114 (355)
T ss_dssp HHHHHHHHHHHH---HHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCG----GGGHHHHHHHHH-
T ss_pred HHHHHHHHHHHH---HCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHH----HHHHHHHHhhcC-
Confidence 334466666433 33344533 22345555678999999999998999998887663 221 112345555454
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH
Q 000194 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201 (1880)
Q Consensus 122 ~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~ 201 (1880)
++++-++..|-++++++... ...+.++..++.++ .+++...|.+|+....-+....|+.+. .+++.+-.
T Consensus 115 ~~N~~iR~lALRtL~~I~~~---~m~~~l~~~lk~~L----~d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~~ 183 (355)
T 3tjz_B 115 GKEDSYRGPAVRALCQITDS---TMLQAIERYMKQAI----VDKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQE 183 (355)
T ss_dssp SSCHHHHHHHHHHHHHHCCT---TTHHHHHHHHHHHH----TCSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHHH
T ss_pred CCcHhHHHHHHHHHhcCCCH---HHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHH
Confidence 45788999999999999764 34555666666666 467778888888888888888888765 45666667
Q ss_pred HhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH
Q 000194 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR 280 (1880)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~ 280 (1880)
.+.|+++-|...|..++..+. +.+ ...+.++.+.+..+ +.+ +| +-+.++..+.....+.-...-.
T Consensus 184 ll~d~n~~V~~~Al~lL~ei~----~~d----~~a~~kLv~~l~~~~l~~--~~----~q~~llr~l~~~~~~d~~~~~~ 249 (355)
T 3tjz_B 184 AASSDNIMVQYHALGLLYHVR----KND----RLAVSKMISKFTRHGLKS--PF----AYCMMIRVASRQLEDEDGSRDS 249 (355)
T ss_dssp HTTCSSHHHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHSSCCSC--HH----HHHHHHHHHTCC----------
T ss_pred HhcCCCccHHHHHHHHHHHHH----hhc----hHHHHHHHHHHhcCCCcC--hH----HHHHHHHHHHHhccccchhhHH
Confidence 889999999766655554432 122 12344555544432 221 23 2223333222211110011224
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHhhchhhh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI--PAERDSGFIALGEMAGALDGEL 356 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~--~~~r~~a~~alg~la~~v~~~~ 356 (1880)
++++.+...++|.++.|.-.++.+|-.+....... +......+...|.+ +..|-.|+..|..++..-+..+
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v 322 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV 322 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-----------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH
Confidence 46666777778999999988888777665433222 22333444444543 3457788888888776655443
No 123
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.15 E-value=0.43 Score=54.32 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+..+...++++.|...+.++...+|. .+...+..+......|+.....+|+..+++.+....
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN----------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 4566777775666667999999999998877653 356666777777777753223468888888776543
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
..+. .. ....+.++..+|...... ...++....|+++++++|+...+|..+.....
T Consensus 211 ~~~~-------------~~-~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 211 PGGA-------------KY-KDELIEANEYIAYYYTIN------RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGG-------------GG-HHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred cccc-------------cc-hHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 2110 01 344667888888877664 45789999999999999999999988776543
No 124
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.13 E-value=0.43 Score=57.35 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=83.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|..++.+..+.|+++.|...+.++...+|. .+.+....+..+...|+ ..+|+..+++.+....
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE----------DYSLWNRLGATLANGDR---SEEAVEAYTRALEIQP 278 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Confidence 5778999999999999999999999998877552 36777888888888885 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------------hHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------------GKAW 1715 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------------~k~w 1715 (1880)
. ...-...++.+|..+|+| ++....|++|++++|+. ..+|
T Consensus 279 ~---------------~~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 279 G---------------FIRSRYNLGISCINLGAY-------------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp T---------------CHHHHHHHHHHHHHHTCC-------------HHHHHHHHHHHHHHHCC------------CHHH
T ss_pred C---------------chHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 0 000112344555555443 67889999999998873 5677
Q ss_pred HHHHHHHH
Q 000194 1716 HSWALFNT 1723 (1880)
Q Consensus 1716 ~~wA~~n~ 1723 (1880)
..++....
T Consensus 331 ~~l~~~~~ 338 (365)
T 4eqf_A 331 AALRIALS 338 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776644
No 125
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.93 E-value=1.7 Score=52.60 Aligned_cols=128 Identities=11% Similarity=-0.018 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+.+..+.|+++.|...+.++....+..... .....+....+.+....|+ ..+|+..+++.+.....
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc----hHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHh
Confidence 5688999999999999999999998877543221100 0113456677888888885 68899999886653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1880)
..+....+.++..+|...... ...++....|++|.++.+.. ..++..+|...
T Consensus 300 ----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 300 ----------------LNDRIGEGRACWSLGNAYTAL------GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCcHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 112334566677777766654 34688899999998875543 45666667665
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
...
T Consensus 358 ~~~ 360 (406)
T 3sf4_A 358 MVL 360 (406)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 126
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.85 E-value=0.69 Score=54.11 Aligned_cols=205 Identities=13% Similarity=0.140 Sum_probs=141.5
Q ss_pred ccHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcch
Q 000194 1567 EDVETWLKFASLCRK-------SGRI-------SQARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk-------~g~~-------~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~ 1631 (1880)
.+.+.|+.++.+..+ .|++ +.|...+.++.. .+|. .+.+-+.++.++...|+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~----------~~~~~~~~~~~~~~~~~--- 114 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----------NMLLYFAYADYEESRMK--- 114 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT----------CHHHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHhcCC---
Confidence 457889888888764 4776 889999999887 4542 35677889999999995
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1632 ~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
..+|...+++.+.. . + .+.. .++..+|.+.... +..++....|.+|++.+|..
T Consensus 115 ~~~A~~~~~~al~~-~--p---------------~~~~---~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 115 YEKVHSIYNRLLAI-E--D---------------IDPT---LVYIQYMKFARRA------EGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHHHHHHHHHHTS-S--S---------------SCTH---HHHHHHHHHHHHH------HCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHHHhc-c--c---------------cCcc---HHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCC
Confidence 67899888886641 1 0 1111 1567777777654 34788999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000194 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1880)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1880)
...|..+|...... . .-...|++.|-+++...+ ........+..+....|+..+....+++
T Consensus 168 ~~~~~~~a~~~~~~------~-------~~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 168 HHVYVTAALMEYYC------S-------KDKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp THHHHHHHHHHHHT------S-------CCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------c-------CCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888777654321 0 123477888888888752 2344566777777888998888888888
Q ss_pred cccC--CChh----hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCch
Q 000194 1792 GFAH--VNIN----TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQ 1836 (1880)
Q Consensus 1792 ~~~~--ip~~----~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPq 1836 (1880)
.+.. +|+. .|..++ ++..+.+.. .-...++.+..+.+|.
T Consensus 229 al~~~~l~p~~~~~l~~~~~-~~~~~~g~~-----~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFL-AFESNIGDL-----ASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHH-HHHHHHSCH-----HHHHHHHHHHHHHTTT
T ss_pred HHhccCCCHHHHHHHHHHHH-HHHHHcCCH-----HHHHHHHHHHHHHccc
Confidence 8874 5654 565554 333444332 2234666777788886
No 127
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.70 E-value=0.035 Score=65.48 Aligned_cols=240 Identities=12% Similarity=0.104 Sum_probs=105.5
Q ss_pred HHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000194 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1880)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1880)
.+.+-+.|+++-+|-.|..++|.+..+.. +..+ ...+..++.|.+|.||.+++-+.
T Consensus 108 sl~kDl~~~N~~iR~lALRtL~~I~~~~m-----------------------~~~l-~~~lk~~L~d~~pyVRk~A~l~~ 163 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPAVRALCQITDSTM-----------------------LQAI-ERYMKQAIVDKVPSVSSSALVSS 163 (355)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCTTT-----------------------HHHH-HHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhhcCCCcHhHHHHHHHHHhcCCCHHH-----------------------HHHH-HHHHHHHcCCCCHHHHHHHHHHH
Confidence 33455678899999999999998864321 2222 34456678999999999887664
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHH
Q 000194 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1880)
Q Consensus 586 ~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1880)
..--..++.+. ..++..+..+++|.++.|...|+.++..+.+..+. .+..++..+... +. +. +.+-..
T Consensus 164 ~kL~~~~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~-~l-~~-~~~q~~ 231 (355)
T 3tjz_B 164 LHLLKCSFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRH-GL-KS-PFAYCM 231 (355)
T ss_dssp HHHTTTCHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSS-CC-SC-HHHHHH
T ss_pred HHHhccCHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcC-CC-cC-hHHHHH
Confidence 21011122221 13566777889999999999999999999876632 222233333221 11 00 122222
Q ss_pred HHHHHHhC-cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCch
Q 000194 666 LGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1880)
Q Consensus 666 L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~ 744 (1880)
+-.++... ++.-..-...+++.+.+.++.. ++.|.-.++.+|-.+.......+ ....+.+...+.. .+.
T Consensus 232 llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~-----~~aVvyEa~k~I~~l~~~~~~~~----~~a~~~L~~fLss-~d~ 301 (355)
T 3tjz_B 232 MIRVASRQLEDEDGSRDSPLFDFIESCLRNK-----HEMVVYEAASAIVNLPGCSAKEL----APAVSVLQLFCSS-PKA 301 (355)
T ss_dssp HHHHHTCC-----------------CCCCCS-----SHHHHHHHHHHHTC---------------CCCTHHHHHHS-SSS
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHhccCCCHHHH----HHHHHHHHHHHcC-CCc
Confidence 22222221 1110112244555666666643 67787777777655544222222 2223333344443 356
Q ss_pred hhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 745 ~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
+.|=.|+..|..++......+.... ..+.+.++ +.+..++.-|+..+
T Consensus 302 niryvaLr~L~~l~~~~P~~v~~~n------~~ie~li~-d~n~sI~t~Aittl 348 (355)
T 3tjz_B 302 ALRYAAVRTLNKVAMKHPSAVTACN------LDLENLVT-DANRSIATLAITTL 348 (355)
T ss_dssp SSHHHHHHCC--------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHCcHHHHHHH------HHHHHHcc-CCcHhHHHHHHHHh
Confidence 7999999999998877655443322 12233333 33555665554444
No 128
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.68 E-value=1.5 Score=60.04 Aligned_cols=301 Identities=13% Similarity=0.120 Sum_probs=172.1
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc
Q 000194 1274 AEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK 1353 (1880)
Q Consensus 1274 ~efm~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~ 1353 (1880)
.+|.++.++ .+...+|.++..-+.|..|....|..- ..... +..++..++..|-+.-.......
T Consensus 1041 ~eyI~kLd~---~d~~eIA~Iai~lglyEEAf~IYkKa~----------~~~~A---~~VLie~i~nldrAiE~Aervn~ 1104 (1630)
T 1xi4_A 1041 MEYINRLDN---YDAPDIANIAISNELFEEAFAIFRKFD----------VNTSA---VQVLIEHIGNLDRAYEFAERCNE 1104 (1630)
T ss_pred HHHHHHhhh---ccHHHHHHHHHhCCCHHHHHHHHHHcC----------CHHHH---HHHHHHHHhhHHHHHHHHHhcCC
Confidence 345555454 557789999999999999997776531 11222 23334477777777766653322
Q ss_pred hhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHH
Q 000194 1354 ELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMA 1433 (1880)
Q Consensus 1354 ~~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~ 1433 (1880)
..-.-..+..+++.|+|++|..+|++. .+ .+.......|+.++|+|+++..+....-... ++ ..+-...
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA----dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e--~~Idt~L 1173 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKA-RE--SYVETEL 1173 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-cc--ccccHHH
Confidence 111122345689999999999999764 23 3456779999999999999987775421111 00 0011124
Q ss_pred HHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHH
Q 000194 1434 ANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEE 1513 (1880)
Q Consensus 1434 a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE 1513 (1880)
+.+..++++++.++.|++... ...+..+|..+.+ .+.+..|...-.+. ..|.+.-..+++ +.|+++
T Consensus 1174 afaYAKl~rleele~fI~~~n---~ad~~~iGd~le~-----eg~YeeA~~~Y~kA---~ny~rLA~tLvk---Lge~q~ 1239 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFINGPN---NAHIQQVGDRCYD-----EKMYDAAKLLYNNV---SNFGRLASTLVH---LGEYQA 1239 (1630)
T ss_pred HHHHHhhcCHHHHHHHHhCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHhh---hHHHHHHHHHHH---hCCHHH
Confidence 667788899999999875322 1222223322211 12333343332221 234443334333 467888
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHH
Q 000194 1514 VIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLV 1593 (1880)
Q Consensus 1514 ~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~ 1593 (1880)
+++....... .+.|.+--..|-+.-+.-.-......++ .+.+..-..++...+.|+++.|.+.+.
T Consensus 1240 AIEaarKA~n-----------~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1240 AVDGARKANS-----------TRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHhCC-----------HHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8875532211 2677654333321111111111111122 234444577777899999999999998
Q ss_pred HHhcCCCCCCc-----ccccCCCChHHHHHHHHHHHhcCCcc
Q 000194 1594 KLLQYDPETSH-----ENVRYHGPPQVMYAYLKYQWSLGEDL 1630 (1880)
Q Consensus 1594 ~l~~~~~~~~~-----~~~~~~~~~~v~~~~ak~lw~~g~~~ 1630 (1880)
+.+++++.-.. ..+...-.|.-..|++|+.|.+++..
T Consensus 1305 ~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1305 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 88877643100 01112346888889999999888754
No 129
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.68 E-value=3.7 Score=49.82 Aligned_cols=121 Identities=13% Similarity=-0.041 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|..++.+..+.|+++.|...+.++....+..... .....+....+.+++..|+ ..+|+..+++.+.....
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER----EVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999998877653321100 0124566778888888995 68899999887653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1880)
..+....+.++..+|...... ...++....|++|.++.++.......|
T Consensus 336 ----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~ 383 (411)
T 4a1s_A 336 ----------------LGDRIGEARACWSLGNAHSAI------GGHERALKYAEQHLQLAXXXXXXXXXX 383 (411)
T ss_dssp ----------------HTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ----------------CCChHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHhhcccchhhh
Confidence 112345677788888877665 357899999999999988665444433
No 130
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.65 E-value=0.88 Score=55.00 Aligned_cols=151 Identities=10% Similarity=-0.050 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|..+..+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+. ..+|+..+++.+..-.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~----------~~~a~~~~g~~l~~~g~d--~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----------NYTVWHFRRVLLKSLQKD--LHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc----------CHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHHCC
Confidence 4788999999999999999999999999988763 467778888888888841 5799999998775311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
.. ..--..++.++..+|+| ++.+..|++|++++|+++.+|+..|......=.
T Consensus 164 ~~---------------~~a~~~~g~~~~~~g~~-------------~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 164 KN---------------YQVWHHRRVLVEWLRDP-------------SQELEFIADILNQDAKNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp TC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred CC---------------HHHHHHHHHHHHHccCH-------------HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC
Confidence 00 00112345555555443 467889999999999999999998877665210
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN 1778 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~ 1778 (1880)
| ..|+..|-++|.+. +. .......+-.+++.
T Consensus 216 -------------~-~eAl~~~~~al~l~-----P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 216 -------------W-DNELQYVDQLLKED-----VR-NNSVWNQRYFVISN 246 (382)
T ss_dssp -------------C-TTHHHHHHHHHHHC-----TT-CHHHHHHHHHHHHH
T ss_pred -------------h-HHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHH
Confidence 1 25788888888875 22 23334444455555
No 131
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.62 E-value=2 Score=49.74 Aligned_cols=250 Identities=11% Similarity=0.063 Sum_probs=148.4
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHH---HHHHHHHHHhhcCChHHHhHHHHHHhchh--hhhhcHHHHHH
Q 000194 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVA---VVEALIHINNQLHQHEAAVGILTYAQKEL--DVQLKESWYEK 1366 (1880)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~---~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~--~~~~~~~~~e~ 1366 (1880)
.+-+..-|.|..|+-+.+..-. .+|.+ .-..|.+.|-.+|++|.+..-++...... ........+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcC
Confidence 3557788999999988765422 12333 33468899999999999887665321110 11223345778
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000194 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1880)
.|++++|++.|++.+....+|+. .+....+-.++...|+++.-....+. +.+.+ .....+....++|+++.-
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~----~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTLHQ---GDSLE----CMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHH----HHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHH----HHHHHHHHHHHCCCHHHH
Confidence 89999999999988764323432 34445555778899999887766654 22222 222345567777777776
Q ss_pred HHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCc
Q 000194 1447 AEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526 (1880)
Q Consensus 1447 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~ 1526 (1880)
.+.+..+... .++...
T Consensus 150 ~~~l~~~~~~-----------------~p~~~~----------------------------------------------- 165 (291)
T 3mkr_A 150 RKELKKMQDQ-----------------DEDATL----------------------------------------------- 165 (291)
T ss_dssp HHHHHHHHHH-----------------CTTCHH-----------------------------------------------
T ss_pred HHHHHHHHhh-----------------CcCcHH-----------------------------------------------
Confidence 5544432110 000000
Q ss_pred hhhHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 000194 1527 AEGRRAIIRNMWTERIQG---TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETS 1603 (1880)
Q Consensus 1527 ~~~~~~~l~~~W~~Rl~~---~~~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~ 1603 (1880)
..+...|-..+.+ ...-....+.++.. .| ++...|...+....+.|+++.|...+.+++..+|.
T Consensus 166 -----~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-- 232 (291)
T 3mkr_A 166 -----TQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-- 232 (291)
T ss_dssp -----HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred -----HHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 0011111111000 00011122222222 23 45778888999999999999999999999887663
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1604 HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1604 ~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
.|......+.+++..|+. ...+...+++.+.
T Consensus 233 --------~~~~l~~l~~~~~~~g~~--~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 --------HPETLINLVVLSQHLGKP--PEVTNRYLSQLKD 263 (291)
T ss_dssp --------CHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHH
Confidence 577888889999999963 2234566666543
No 132
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=95.60 E-value=0.035 Score=75.06 Aligned_cols=153 Identities=11% Similarity=0.103 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhcccc-CcchhHHHHHHHHHHhhcccCCC-hHHHHHHHHHHHHHhhhC
Q 000194 66 FMDQLYDRISGLLE-SNDAAENLGALRAIDELIDVAL-GENASKVSKFSNYMRTVFEVKRD-REILVLASKVLGHLARAG 142 (1880)
Q Consensus 66 ~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~Li~~~~-~~~~~~~~~~~~~L~~~l~~~~d-~~v~~~aa~~l~~L~~~~ 142 (1880)
+.+.+.+.+.+..+ +++| .|.+.+.-+-.++--.. --......+..+.+..++. +.. .||++.|+.+|..|...+
T Consensus 798 ~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~-D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 798 HVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLY-NEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTT-CSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcC
Confidence 34555556656565 5788 88877665544432100 0011122456677777774 667 899999999999998753
Q ss_pred CCCchhHHHHHHHHHHhhhcC-----------CCcchhHHHHHHHHHHHHhhcCccc--hhchHHHHHHHHHHhcCCchh
Q 000194 143 GAMTADEVEFQVKMALDWLRG-----------DRVEYRRFAAVLILKEMAENASTVF--NVHVAEFVDAIWVALRDPTLA 209 (1880)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~-----------~~~~~~R~aA~~~l~~la~~~p~~l--~~~l~~i~~~i~~~l~D~~~~ 209 (1880)
+. ...++..+....+.+.. .+...+||||++.|+++....|..+ -+++|+++..+-...+||.+
T Consensus 876 ~~--~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~- 952 (997)
T 1vsy_5 876 KE--EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM- 952 (997)
T ss_dssp CS--HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-
T ss_pred Cc--hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-
Confidence 12 12233334433333311 1122689999999999999999987 68999999999889999877
Q ss_pred HHHHHHHHHHHHHH
Q 000194 210 VRERAVEALRACLR 223 (1880)
Q Consensus 210 VR~aA~~al~~~~~ 223 (1880)
|+.++-++++.+-+
T Consensus 953 i~~tvk~tlseFkr 966 (997)
T 1vsy_5 953 TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999887644
No 133
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.54 E-value=0.47 Score=52.26 Aligned_cols=167 Identities=16% Similarity=0.063 Sum_probs=113.0
Q ss_pred HHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-----------C
Q 000194 1559 RALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-----------G 1627 (1880)
Q Consensus 1559 R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~-----------g 1627 (1880)
++.+-...++...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+... |
T Consensus 29 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~~~~~~~~~~~~g 98 (217)
T 2pl2_A 29 ERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----------YLGGYMVLSEAYVALYRQAEDRERGKG 98 (217)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 3333323356899999999999999999999999999887663 356677777887777 7
Q ss_pred CcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh
Q 000194 1628 EDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC 1707 (1880)
Q Consensus 1628 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~ 1707 (1880)
+..+|+..+++.+..-. -.+.++..+|...... ...++.+..|++|+++
T Consensus 99 ---~~~~A~~~~~~al~~~P----------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 99 ---YLEQALSVLKDAERVNP----------------------RYAPLHLQRGLVYALL------GERDKAEASLKQALAL 147 (217)
T ss_dssp ---HHHHHHHHHHHHHHHCT----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHhCc----------------------ccHHHHHHHHHHHHHc------CChHHHHHHHHHHHhc
Confidence 46889999888765311 0133455556555543 3468899999999999
Q ss_pred cccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHH
Q 000194 1708 ATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQI 1787 (1880)
Q Consensus 1708 ~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~ 1787 (1880)
+ +...+|...|......= -...|+..|-+++... +. .......+-.+++..|..++-..
T Consensus 148 ~-~~~~~~~~la~~~~~~g--------------~~~~A~~~~~~al~~~-----P~-~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMG--------------RLDEALAQYAKALEQA-----PK-DLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHT--------------CHHHHHHHHHHHHHHS-----TT-CHHHHHHHHHHHTC---------
T ss_pred c-cchHHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHccCHHHHHH
Confidence 9 88999999988755421 2347889999998875 22 33445566666777776655433
No 134
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.53 E-value=0.78 Score=52.10 Aligned_cols=172 Identities=11% Similarity=0.010 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.++..+....+.|+++.|...+.++...+|. .+.+.+..+...+..|+ ..+|+..+++.+. ..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~-~~- 67 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN----------SPYIYNRRAVCYYELAK---YDLAQKDIETYFS-KV- 67 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC----------CSTTHHHHHHHHHHTTC---HHHHHHHHHHHHT-TS-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHh-cc-
Confidence 356889999999999999999999999887653 24456777888888885 6899999988765 11
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
.+....++++..+|...... ...++.+..|+++++.+|+...+|...|..+...
T Consensus 68 -----------------~~~~~~~~~~~~lg~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--- 121 (272)
T 3u4t_A 68 -----------------NATKAKSADFEYYGKILMKK------GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK--- 121 (272)
T ss_dssp -----------------CTTTCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT---
T ss_pred -----------------CchhHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---
Confidence 12233566677777776654 3578999999999999999999999999886641
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1880)
.-...|+..|-+++... +.+ ......+-...+..+...+..+.+++.+..-|.
T Consensus 122 -----------~~~~~A~~~~~~al~~~-----~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 122 -----------GNFPLAIQYMEKQIRPT-----TTD-PKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp -----------TCHHHHHHHHGGGCCSS-----CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -----------cCHHHHHHHHHHHhhcC-----CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 12347788888877763 222 222223331333345655666666665544443
No 135
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.47 E-value=0.5 Score=52.51 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=117.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|..++.+..+.|+++.|...+.++...++. .+.+.+..+.+.+..|+ ..+|+..+++.+...
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSS----------AATAYYGAGNVYVVKEM---YKEAKDMFEKALRAG 121 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----------chHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC
Confidence 35788999999999999999999999988776542 36777888889998885 678999988876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. . ..++..+|.-.... ...++....|+++++.+|+...+|..+|......
T Consensus 122 ~~------------------~----~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 172 (243)
T 2q7f_A 122 ME------------------N----GDLFYMLGTVLVKL------EQPKLALPYLQRAVELNENDTEARFQFGMCLANE- 172 (243)
T ss_dssp CC------------------S----HHHHHHHHHHHHHT------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred CC------------------C----HHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-
Confidence 11 0 12233344433332 2357888999999999999999998888776542
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1880)
+ -...|+..|-+++... + ........+-.+.+..|+..+....+++.+..-
T Consensus 173 ------~-------~~~~A~~~~~~~~~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 173 ------G-------MLDEALSQFAAVTEQD-----P-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp ------T-------CCHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred ------C-------CHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 1 1135777777777764 2 223445666667777788777776666665433
No 136
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.46 E-value=1.3 Score=49.61 Aligned_cols=168 Identities=15% Similarity=0.080 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+......|+++.|...+.++...++. .+.+.+..+...+..|+ ..+|+..+++.+.....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----------SADAHAALAVVFQTEME---PKLADEEYRKALASDSR 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcC
Confidence 788999999999999999999999988876542 36777888888888885 67899998887653210
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh--hcccchHHHHHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ--CATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~--~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
...++..+|.-.... ...++....|.++.+ ..|....+|..+|......
T Consensus 104 ----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~- 154 (252)
T 2ho1_A 104 ----------------------NARVLNNYGGFLYEQ------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM- 154 (252)
T ss_dssp ----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-
T ss_pred ----------------------cHHHHHHHHHHHHHH------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-
Confidence 022333344333332 235778899999988 7788888888888765431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|+..|-+++... .........+-.+++..|+..+....+++.+..-|
T Consensus 155 -------------g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 206 (252)
T 2ho1_A 155 -------------KKPAQAKEYFEKSLRLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206 (252)
T ss_dssp -------------TCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred -------------CCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 12347788888888774 22345567777788888888877777777765544
No 137
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.32 E-value=0.27 Score=52.27 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=99.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+.+..+.|+++.|...+.++....+. .+.+....+...+..++ ...|+..+++.+...
T Consensus 37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~a~~~~~~a~~~~ 103 (184)
T 3vtx_A 37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------SAEAYYILGSANFMIDE---KQAAIDALQRAIALN 103 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999988776542 46777788888888885 578888887765431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
... ..-...++.+|..+|+ .++.++.|+++++.+|+...+|+..|......
T Consensus 104 ~~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~- 154 (184)
T 3vtx_A 104 TVY---------------ADAYYKLGLVYDSMGE-------------HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK- 154 (184)
T ss_dssp TTC---------------HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred ccc---------------hHHHHHHHHHHHHhCC-------------chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC-
Confidence 100 0111234555554444 47788999999999999999999999876541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
+ -...|++.|-++|...
T Consensus 155 ------g-------~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 155 ------G-------LRDEAVKYFKKALEKE 171 (184)
T ss_dssp ------T-------CHHHHHHHHHHHHHTT
T ss_pred ------C-------CHHHHHHHHHHHHhCC
Confidence 1 2347899999998874
No 138
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.30 E-value=1.7 Score=54.43 Aligned_cols=198 Identities=20% Similarity=0.261 Sum_probs=115.0
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCccc--cc---HHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY--VL---PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN 672 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~--v~---p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~ 672 (1880)
|.-++.|+..|.|....+|..++-+|..|+..|+.. ++ ..+.+ +..++..=... .....-+.++.++..|++.
T Consensus 165 p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~-Lf~Ii~~Eg~~-~Ggivv~DCL~ll~nLLr~ 242 (651)
T 3grl_A 165 PMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFER-LLDIITEEGNS-DGGIVVEDCLILLQNLLKN 242 (651)
T ss_dssp TTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH-HHHHHHHHTGG-GSHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHH-HHHHHHhcCCC-ccchhHHHHHHHHHHHHhc
Confidence 345788899999999999999999999999999641 00 11211 22233221222 2345566788889999876
Q ss_pred Cc---cccc--CchHHHHHHHHHHhccCCCC-CCChhHHHH---HHHHHHHHHHhcCCc--h-----hhhHHhHHHHHHH
Q 000194 673 CE---RLIR--PYIAPIHKALVARLLEGTGI-NANNGIISG---VLVTVGDLARVGGFG--M-----RQYISELMPLIVE 736 (1880)
Q Consensus 673 ~~---~~~~--py~~~il~~ll~~l~~~~~~-~~~~~v~~~---~~~~l~~La~~~g~~--~-----~~~~~~l~p~l~~ 736 (1880)
.+ ..|+ .+++.+ .+.+..+... .-......+ ++..+..+..-++.. . .-+-..+++.+++
T Consensus 243 N~sNQ~~FrEt~~i~~L----~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ 318 (651)
T 3grl_A 243 NNSNQNFFKEGSYIQRM----KPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCT 318 (651)
T ss_dssp CHHHHHHHHHTTCGGGG----GGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHH----HHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHH
Confidence 43 2222 122222 2223322100 001222333 444555554432220 1 1122345677777
Q ss_pred HHhc-CCchhhHHHHHHHHHHHHhhcCc-------ccccCC-cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 000194 737 ALLD-GAAVTKREVAVSTLGQVVQSTGY-------VITPYN-EYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 737 ~l~d-~~~~~~r~~Al~~Lg~l~~~~~~-------~i~p~~-~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~l 801 (1880)
.+.. ......|..|+.++|.++++... .-.|+. ..|.++..|+.++.+.....+|.+++.|+...
T Consensus 319 ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 319 ILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 6653 33456889999999998876532 112332 34788888888887666789999999888764
No 139
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.29 E-value=0.35 Score=57.67 Aligned_cols=118 Identities=21% Similarity=0.301 Sum_probs=67.8
Q ss_pred chhHHHHHHhhccc--ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhH
Q 000194 479 SAPVQLALQTLARF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556 (1880)
Q Consensus 479 ~~~~~~Al~~L~~~--~~~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1880)
.+.+.+|-+.+..| .|. .+.+-.-++.+.+.++++..||+.|...+..+... . ...
T Consensus 42 ~k~K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~------------------~i~ 99 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--E------------------NLP 99 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--T------------------CHH
T ss_pred HHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--h------------------hhh
Confidence 44678999999988 453 23344445667888999999999999888776532 1 112
Q ss_pred HHHHHHHHHHHHHhcCCCh---hHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcC
Q 000194 557 LIEELVEKLLIAAVADADV---TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1880)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~---~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1880)
-+.+|+.+|+ .+|... .|+.+.++-+. .|+ ...+..+|..+...+..+|+.+++.|..-...
T Consensus 100 kiaDvL~QlL---qtdd~~E~~~V~~sL~sllk----~Dp----k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~ 164 (507)
T 3u0r_A 100 RVADILTQLL---QTDDSAEFNLVNNALLSIFK----MDA----KGTLGGLFSQILQGEDIVRERAIKFLSTKLKT 164 (507)
T ss_dssp HHHHHHHHHT---TCCCHHHHHHHHHHHHHHHH----HCH----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHH---hccchHHHHHHHHHHHHHHh----cCh----HHHHHHHHHHHcccchHHHHHHHHHHHHHHhh
Confidence 2344444444 333321 23344444442 122 22455555444434567888888877554443
No 140
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.23 E-value=1.8 Score=50.54 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|..++.+..+.|+++.|...+.++....+..... ...+.+....+.+.+..|+ ..+|+..+++.+....
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 36689999999999999999999988877543211000 0114556677888888885 6889999988765332
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1880)
. ..+....+.++..+|...... ...++....|+++.++.++
T Consensus 295 ~----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 295 E----------------LKDRIGEGRACWSLGNAYTAL------GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp H----------------HTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHC---
T ss_pred h----------------cCCcHHHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHh
Confidence 1 112334566677777766654 3468889999999888764
No 141
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.23 E-value=0.21 Score=49.58 Aligned_cols=120 Identities=18% Similarity=0.089 Sum_probs=88.6
Q ss_pred HHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHH
Q 000194 1559 RALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFAR 1638 (1880)
Q Consensus 1559 R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~ 1638 (1880)
|...+.| +..+.|........+.|+++.|.....++...+|. .+.+.+..+.+++..|+ ..+|+..
T Consensus 4 r~a~inP-~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~---~~~A~~~ 69 (126)
T 4gco_A 4 RLAYINP-ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----------NAILYSNRAACLTKLME---FQRALDD 69 (126)
T ss_dssp ---CCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHhhHHHhhcc---HHHHHHH
Confidence 3334444 34778888899999999999999999999887663 46788888999999995 6889999
Q ss_pred HHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000194 1639 LQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1880)
Q Consensus 1639 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1880)
+++.+.- .. -.++++..+|.-...+ ...++.+..|+++++++|++..++..+
T Consensus 70 ~~~al~~-~p---------------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 70 CDTCIRL-DS---------------------KFIKGYIRKAACLVAM------REWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHH-CT---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHh-hh---------------------hhhHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9887642 11 0133455555544443 245789999999999999999998877
Q ss_pred HH
Q 000194 1719 AL 1720 (1880)
Q Consensus 1719 A~ 1720 (1880)
+.
T Consensus 122 ~~ 123 (126)
T 4gco_A 122 RN 123 (126)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 142
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.22 E-value=0.47 Score=52.52 Aligned_cols=156 Identities=15% Similarity=0.036 Sum_probs=113.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN----------LANAYIGKSAAYRDMKN---NQEYIATLTEGIKAV 106 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----------HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----------hHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHC
Confidence 45677888999999999999999999999887652 46778888999999995 689999999877532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~~ 1724 (1880)
... ......++.++..+|.+.... ...++.+..|++|++.+|+ ...+|..+|..+..
T Consensus 107 p~~---------------~~~~~~~~~~~~~~g~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 107 PGN---------------ATIEKLYAIYYLKEGQKFQQA------GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp TTC---------------HHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCc---------------HHHHHHHHHHHHHHhHHHHHh------ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 110 111244678899999998765 4689999999999999999 88999999888765
Q ss_pred HHHhhhc----cCCC---------CchhhHHHHHHHHHHHHHhhc
Q 000194 1725 VMSHYTL----RGLP---------SVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1725 ~~~~~~~----~~~~---------~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.-...-. -... .........|+..|-+++.+.
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4332100 0000 011223467888888888775
No 143
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.15 E-value=0.005 Score=68.89 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=8.8
Q ss_pred CCCCHHHHHHHHHHHH
Q 000194 784 GELVWSTRREVLKVLG 799 (1880)
Q Consensus 784 ~~~~~~vr~~~l~~lg 799 (1880)
.+.++.||.++...||
T Consensus 227 ~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 227 DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp CCCCHHHHHHHHCCC-
T ss_pred cCCCHHHHHHHHHHhC
Confidence 4556677766654443
No 144
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.03 E-value=1.2 Score=49.76 Aligned_cols=172 Identities=13% Similarity=0.019 Sum_probs=120.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++....+. .+.+....+..+...|+ ..+|+..+++.+. .
T Consensus 69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~-~ 134 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR----------NARVLNNYGGFLYEQKR---YEEAYQRLLEASQ-D 134 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTT-C
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----------cHHHHHHHHHHHHHHhH---HHHHHHHHHHHHh-C
Confidence 34678899999999999999999999998876542 36777888888888885 6889998887654 0
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. ....+.++..+|...... ...++....|.++.+.+|....+|..+|..+...
T Consensus 135 ~~-------------------~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~- 188 (252)
T 2ho1_A 135 TL-------------------YPERSRVFENLGLVSLQM------KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE- 188 (252)
T ss_dssp TT-------------------CTTHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-
T ss_pred cc-------------------CcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-
Confidence 00 111344455555555443 3468899999999999999999999888776541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|+..|-+++... + ........+..+.+..|+..+..+.+++.+..-|
T Consensus 189 -------------g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 189 -------------REYVPARQYYDLFAQGG-----G-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp -------------TCHHHHHHHHHHHHTTS-----C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------CCHHHHHHHHHHHHHhC-----c-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 12346788888877764 2 2344455566667777887776666665554433
No 145
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.00 E-value=2.2 Score=46.25 Aligned_cols=168 Identities=12% Similarity=-0.033 Sum_probs=105.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+.+.+..|+ ..+|+..+++.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----------NELAWLVRAEIYQYLKV---NDKAQESFRQALSIK 72 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC
Confidence 44677888888888888888888888887765442 35666777788888884 577888887765431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh--hcccchHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ--CATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~--~~~~~~k~w~~wA~~n~~ 1724 (1880)
.. .+.++..+|.-.... ....++....|+++++ .+|....+|+.+|.....
T Consensus 73 ~~----------------------~~~~~~~l~~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 73 PD----------------------SAEINNNYGWFLCGR-----LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp TT----------------------CHHHHHHHHHHHHTT-----TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred CC----------------------ChHHHHHHHHHHHHh-----cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 10 122334444443322 0245777888888888 556666777777766543
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
. .-...|+..|-+++... + ........+-.+.+..|+..+....+++.+.
T Consensus 126 ~--------------~~~~~A~~~~~~~~~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 126 Q--------------GQFGLAEAYLKRSLAAQ-----P-QFPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp T--------------TCHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred c--------------CCHHHHHHHHHHHHHhC-----C-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 12346777777777664 1 2234455566666777776666555555543
No 146
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.99 E-value=0.8 Score=57.43 Aligned_cols=188 Identities=13% Similarity=0.098 Sum_probs=133.1
Q ss_pred CcccHHHHHHHHHHHHhcCCh-hHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1565 PTEDVETWLKFASLCRKSGRI-SQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1565 ~~e~~~~~lk~a~laRk~g~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
+..+...|...+......|++ +.|...+.++...+|. .+...+..+.++|..|+ ..+|+..+++.+
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al 164 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE----------LVEAWNQLGEVYWKKGD---VTSAHTCFSGAL 164 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 446799999999999999999 9999999999887653 46788899999999995 689999998865
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCC---CCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000194 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGL---DDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1880)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~---~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1880)
.. . +. +.++..+|.-......+. .....++.+..|++|++++|+...+|+.+|.
T Consensus 165 ~~-~--------------------p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 221 (474)
T 4abn_A 165 TH-C--------------------KN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN 221 (474)
T ss_dssp TT-C--------------------CC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hh-C--------------------CC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 31 0 01 244555555443320000 0024578899999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1721 FNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1721 ~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.+...+-.. +. ...-...|+..|-+++.+.+. ..........+-.+++..|...+..+.+++.+..-|
T Consensus 222 ~~~~~~~~~---~~---~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 222 AYLSLYFNT---GQ---NPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHT---TC---CHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhh---cc---ccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 887653211 11 124566899999999988521 003455566677777888888877777777665433
No 147
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.93 E-value=1 Score=51.02 Aligned_cols=174 Identities=10% Similarity=0.047 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...+...+....+.|+++.|...+.++....|... ..+.+.+..+...+..|+ ..+|+..++.++...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-------WAADAQFYLARAYYQNKE---YLLAASEYERFIQIY 82 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-------chHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHC
Confidence 4578899999999999999999999999987655310 126788889999999995 689999999987643
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCC--CCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH--
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPP--GLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN-- 1722 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~--~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n-- 1722 (1880)
... .....+++.+|.-.....+ .......++.+..|+++++.+|+...++..++...
T Consensus 83 p~~-------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~ 143 (261)
T 3qky_A 83 QID-------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL 143 (261)
T ss_dssp TTC-------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred CCC-------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH
Confidence 211 1123334444444333100 00123568899999999999998876664332221
Q ss_pred --------HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc
Q 000194 1723 --------TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH 1779 (1880)
Q Consensus 1723 --------~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~ 1779 (1880)
..+-..+... .-...|+..|-+++...+. .....+...++-.+++..
T Consensus 144 ~~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 144 RAKLARKQYEAARLYERR-------ELYEAAAVTYEAVFDAYPD---TPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-------cCHHHHHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHh
Confidence 1111111111 1235788888888876421 122444566666666655
No 148
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.84 E-value=1.9 Score=50.28 Aligned_cols=176 Identities=10% Similarity=0.075 Sum_probs=118.2
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQ-VMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~-v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
.+....|+.++.+..+.|+++.|.....++...+|. .+. +.+.++.++...|+ ..+|...+++.+.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~ 162 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI----------DPTLVYIQYMKFARRAEG---IKSGRMIFKKARE 162 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS----------CTHHHHHHHHHHHHHHHC---HHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc----------CccHHHHHHHHHHHHhcC---HHHHHHHHHHHHh
Confidence 356889999999999999999999999999876542 244 77888888888885 5788888887653
Q ss_pred HhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1645 ELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1645 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
.. + .. +.++...|.-.... ....++....|.++++.+|+...+|..+|.+..+
T Consensus 163 ~~---p---------------~~----~~~~~~~a~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 163 DA---R---------------TR----HHVYVTAALMEYYC-----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp ST---T---------------CC----THHHHHHHHHHHHT-----SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cC---C---------------CC----HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 11 0 01 12232222221111 1457899999999999999999999999877432
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.+ -...|+..|-+++.... ..++....-..++..+...+|+..++.....+.+...|
T Consensus 216 -------~g-------~~~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 216 -------LN-------EDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp -------TC-------CHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred -------CC-------CHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 11 23478888888887410 01122333345556666778888777766666655444
No 149
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.83 E-value=7.5 Score=44.71 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=82.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++...+|. .....+..+-..+..+. .+..+|+..+++++...
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~----------~~~~~l~~a~~~l~~~~-~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED----------ATLTQLATAWVSLAAGG-EKLQDAYYIFQEMADKC 196 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC----------cHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHhC
Confidence 55788999999999999999999999998876542 23333333322332322 15789999999987652
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
... ..--..+|.++..+|+| ++....|++|++.+|+...+|...+.+...
T Consensus 197 p~~---------------~~~~~~la~~~~~~g~~-------------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 197 SPT---------------LLLLNGQAACHMAQGRW-------------EAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp CCC---------------HHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCc---------------HHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 110 00011245555555554 678899999999999999999999876544
No 150
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.66 E-value=4.2 Score=50.48 Aligned_cols=116 Identities=10% Similarity=-0.009 Sum_probs=70.8
Q ss_pred HHHHHHHHHhccchhhhhhhccchhcccc---cccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-------hh
Q 000194 1288 IRLLGALAEKCRAFAKALHYKEMEFEGAR---SNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-------DV 1357 (1880)
Q Consensus 1288 ~~~l~~~a~~c~a~a~AL~y~E~~~~~~~---~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-------~~ 1357 (1880)
+..||.+-..-|.|..|+-+++....-.+ ....++....+...|..+|..+|+.+.+...+..+.... ..
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 45688888888999999988876543111 001122334456788999999999999987766432110 00
Q ss_pred hh------cHHHHHHh--cCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000194 1358 QL------KESWYEKL--QRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1358 ~~------~~~~~e~l--g~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
.. .+..+-++ +++++|+++|++.+...++. .+...++..++..+|.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~---~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN---PEFTSGLAIASYRLDN 187 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcC
Confidence 11 11112233 46999999999998765543 3455555555544443
No 151
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.65 E-value=1 Score=47.23 Aligned_cols=165 Identities=12% Similarity=-0.022 Sum_probs=109.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+....+.|+++.|...+.++....+ ..+.+.+..+...+..|+ ..+|+..+++.+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA----------FDVDVALHLGIAYVKTGA---VDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS----------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----------cChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Confidence 366788889999999999999998877665433 236777788888888885 6789988888765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
. ...++..+|...... ...++....|+++.+.+|....+|..+|......
T Consensus 74 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 123 (186)
T 3as5_A 74 D----------------------NVKVATVLGLTYVQV------QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-- 123 (186)
T ss_dssp T----------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred C----------------------CHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc--
Confidence 0 012233334333322 2356788899999999998888888888765431
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1880)
.-...|+..|-+++... + ........+-.+.+..|+..+....+++.+
T Consensus 124 ------------~~~~~A~~~~~~~~~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 124 ------------GRFDEAIDSFKIALGLR-----P-NEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp ------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------CcHHHHHHHHHHHHhcC-----c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12346777787777764 2 223445556666677777666655555543
No 152
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.64 E-value=1.4 Score=49.30 Aligned_cols=108 Identities=11% Similarity=0.120 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
..+.|...+....+.|+++.|...+.++...+ . .+.+.+..+..++..|+ ..+|+..+++.+....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----------~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----------DITYLNNRAAAEYEKGE---YETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----------cHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999987754 1 36788889999999995 6889999998765322
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1880)
.. .......+.++..+|...... ...++.+..|+++++++++
T Consensus 70 ~~---------------~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~ 111 (258)
T 3uq3_A 70 EM---------------RADYKVISKSFARIGNAYHKL------GDLKKTIEYYQKSLTEHRT 111 (258)
T ss_dssp HT---------------TCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCC
T ss_pred cc---------------ccchHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhcCch
Confidence 11 112233466677777766654 3467777888888775543
No 153
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.58 E-value=0.53 Score=49.45 Aligned_cols=150 Identities=16% Similarity=0.124 Sum_probs=103.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1880)
.++......+.|..|+.+++...... +........+..+|...|+.+.+...++..... . . .......+
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45777778889999998887765432 234567778999999999999998888754321 1 1 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1880)
.+.|+|++|+..|++.+...++. ......+..++..+|+|+.-....+... .+... ......+.+.+..|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG----KVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCC
Confidence 88999999999999988654332 3456778889999999987766655422 11121 223355678888999
Q ss_pred hhhHHHHHhh
Q 000194 1443 WDQMAEYVSR 1452 (1880)
Q Consensus 1443 Wd~~~~~~~~ 1452 (1880)
|+.-..+...
T Consensus 160 ~~~A~~~~~~ 169 (186)
T 3as5_A 160 HEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887766553
No 154
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.50 E-value=2 Score=47.28 Aligned_cols=161 Identities=13% Similarity=0.107 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+....+.|+++.|...+.++...+|. ..+...+..+.+.+..|+ ..+|+..+++.+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~- 72 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---------QDSVTAYNCGVCADNIKK---YKEAADYFDIAIKKN- 72 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC---------CCcHHHHHHHHHHHHhhc---HHHHHHHHHHHHHhC-
Confidence 4688999999999999999999999998877541 124566678888999995 689999998876421
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
+..+.++..+|.-.... ...++.+..|+++++.+|+....+..++.+...+-.
T Consensus 73 ---------------------p~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 125 (228)
T 4i17_A 73 ---------------------YNLANAYIGKSAAYRDM------KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQ 125 (228)
T ss_dssp ---------------------CSHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------cchHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhH
Confidence 01344455555555443 346789999999999999988665555544433322
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcC
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHG 1780 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g 1780 (1880)
.+... .-...|++.|-+++... +.. .......+-.+++..|
T Consensus 126 ~~~~~-------~~~~~A~~~~~~al~~~-----p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 126 KFQQA-------GNIEKAEENYKHATDVT-----SKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HHHHT-------TCHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------ccHHHHHHHHHHHHhcC-----CCcccHHHHHHHHHHHHHHH
Confidence 22111 23458999999999874 220 2344444445555544
No 155
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.46 E-value=15 Score=46.43 Aligned_cols=205 Identities=13% Similarity=0.121 Sum_probs=137.7
Q ss_pred ccHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcch
Q 000194 1567 EDVETWLKFASLCRK-------SGRIS-------QARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk-------~g~~~-------~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~ 1631 (1880)
.+.+.|+.++.+..+ .|+++ .|...+.++.. ..| ..+.+.+.++.+....|+
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p----------~~~~l~~~~~~~~~~~g~--- 336 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK----------KNMLLYFAYADYEESRMK--- 336 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS----------SCHHHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc----------ccHHHHHHHHHHHHhcCC---
Confidence 458999999999986 68987 78888888875 444 246788899999999885
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1632 ~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
..+|...+++.+.. . + .+ .+.++..+|.+.... +..++....|.+|++..|..
T Consensus 337 ~~~A~~~~~~al~~-~--p---------------~~---~~~~~~~~~~~~~~~------~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI-E--D---------------ID---PTLVYIQYMKFARRA------EGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HHHHHHHHHHHHHS-S--S---------------SC---HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHhCc-c--c---------------cC---chHHHHHHHHHHHHh------cCHHHHHHHHHHHHhccCCc
Confidence 67899988887642 1 0 01 124566777766543 24678899999999999888
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000194 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1880)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1880)
+..|..+|...+... + -...|.+.|-+++...+ ........+..+....|+..+....+++
T Consensus 390 ~~~~~~~a~~~~~~~------~-------~~~~A~~~~e~al~~~p------~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 390 HHVYVTAALMEYYCS------K-------DKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp THHHHHHHHHHHHHT------C-------CHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc------C-------ChhHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 888877776543311 1 12467888888887642 2344456666667777888888888888
Q ss_pred cccCC--Chh----hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCch
Q 000194 1792 GFAHV--NIN----TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQ 1836 (1880)
Q Consensus 1792 ~~~~i--p~~----~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPq 1836 (1880)
.+... ++. .|..++-- -.+.+ + ..-+..+..+..+.+|.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~-e~~~G--~---~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAF-ESNIG--D---LASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHH-HHHSS--C---HHHHHHHHHHHHHHTHH
T ss_pred HHhccCCCHHHHHHHHHHHHHH-HHHcC--C---HHHHHHHHHHHHHHCch
Confidence 77643 333 67665532 22333 3 13355666677777773
No 156
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.45 E-value=7.1 Score=46.86 Aligned_cols=112 Identities=13% Similarity=0.007 Sum_probs=72.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch------h-----
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE------L----- 1355 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~------~----- 1355 (1880)
.+|....+.|.|..|+.+++......+ .++ ......|..+|...|+.+.+...++.+-.. .
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 568888899999999999987765321 122 245667889999999999998877643211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccC---CCchhHHhHhhHhHHHHHhhC
Q 000194 1356 DVQLKESWYEKLQRWDDALKAYTNKASQAS---NPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1356 ~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~---~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
-....+..|...|+|++|+..|++.+...+ ++.........+-.++..+|+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 011234458899999999999998775321 111112233445556666666
No 157
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.43 E-value=1.7 Score=48.02 Aligned_cols=169 Identities=13% Similarity=0.034 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|+..+....+.|+++.|...+.++...+|. .+.+.+..+.+++..|+ ..+|+..+++.+....
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE----------DAIPYINFANLLSSVNE---LERALAFYDKALELDS 88 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC
Confidence 3677899999999999999999999998876542 36778888999999995 6899999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1880)
. .+.++..+|.-.... ...++....|+++.+.+|+...+|...|......
T Consensus 89 ~----------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 138 (243)
T 2q7f_A 89 S----------------------AATAYYGAGNVYVVK------EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-- 138 (243)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT--
T ss_pred c----------------------chHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--
Confidence 0 123334444443332 2467889999999999999999999888775531
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
+ -...|+..|-+++... .........+-.+++..|...+..+.+.+.+..-|
T Consensus 139 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 139 -----E-------QPKLALPYLQRAVELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp -----S-------CHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred -----c-------cHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 1 2346788888888774 22344566677778888888887777776665444
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.37 E-value=0.78 Score=43.75 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+..+...|+++.|...+.++....|. .+.+.+..+.+.+..|+ ..+|+..+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----------NHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDLKP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----------cHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCc
Confidence 4678999999999999999999999998876542 46778888999999995 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
. ...++..+|...... ...++....|+++.+.+|+...+|..++...
T Consensus 70 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 D----------------------WGKGYSRKAAALEFL------NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred c----------------------cHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 0 123344455544433 2467889999999999999999999888653
No 159
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.24 E-value=2.7 Score=45.51 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=111.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~-g~~~~~~~Al~~L~~~~~~ 1645 (1880)
++...|...+.+..+.|+++.|...+.++...++. .+.+....+.++... |+ ..+|+..+++.+.
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~- 105 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD----------SAEINNNYGWFLCGRLNR---PAESMAYFDKALA- 105 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHT-
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhcCc---HHHHHHHHHHHHc-
Confidence 34678899999999999999999999998876542 356777888888888 84 6889999988765
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
.... .....++..+|...... ...++....|.++++.+|+...+|..+|......
T Consensus 106 ~~~~-------------------~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 106 DPTY-------------------PTPYIANLNKGICSAKQ------GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp STTC-------------------SCHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcCC-------------------cchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 1100 11234455555554443 3467889999999999999999999988876542
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHH
Q 000194 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIAL 1789 (1880)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~ 1789 (1880)
+ -...|+..|-+++... +.........+..+....|...+....+
T Consensus 161 -------~-------~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 161 -------G-------QLGDADYYFKKYQSRV-----EVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp -------T-------CHHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------C-------CHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 2236777777777764 2122333344445555666655544333
No 160
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=94.14 E-value=1.1 Score=43.83 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=87.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.....|...+..+.+.|+++.|...+.++...++. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------DAKLYSNRAACYTKLLE---FQLALKDCEECIQLE 80 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC
Confidence 45889999999999999999999999998876542 36777888888888884 688999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
.. .+.++..+|.-.... ...++....|+++.+.+|+...+|..++.....
T Consensus 81 ~~----------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 81 PT----------------------FIKGYTRKAAALEAM------KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred CC----------------------chHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 10 122344444443332 235788999999999999999999988876543
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.11 E-value=1 Score=43.76 Aligned_cols=116 Identities=13% Similarity=0.054 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+..+...|+++.|...+.++....+. .+.+.+..+.+.+..|+ ..+|+..++..+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA----------NAVYFCNRAAAYSKLGN---YAGAVQDCERAICIDP 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhhc---hHHHHHHHHHHHhcCc
Confidence 4678999999999999999999999998876542 36777888899988885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
. ...++..+|...... ...++....|+++.+.+|+...+|+..|.....
T Consensus 78 ------------------~----~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 78 ------------------A----YSKAYGRMGLALSSL------NKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ------------------T----CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ------------------c----CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 0 123455555555443 346788999999999999999999988877654
No 162
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=93.96 E-value=1.4 Score=46.67 Aligned_cols=135 Identities=17% Similarity=0.229 Sum_probs=90.2
Q ss_pred hHHHHHHHhccCCCCcchhhccHhhHHHHHHHh--CCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCC
Q 000194 576 TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAAL--NDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS 653 (1880)
Q Consensus 576 ~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l--~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~ 653 (1880)
..|..++++|..+..+.+.+ |-++.++.... +=.+..+-...++....|..+.--.+.|++.+++...++-+-...
T Consensus 23 ~~r~~aL~sL~~D~gL~~Ll--Pyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~ 100 (196)
T 4atg_A 23 DMKDIAIECLEKESGLQQLV--PYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS 100 (196)
T ss_dssp TTHHHHHHHHHHCSSCTTTH--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCChhhhH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 57999999997544333211 22333332211 112455556677788888776656788999999988888764321
Q ss_pred -CChHhHHHHHHHHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH
Q 000194 654 -ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1880)
Q Consensus 654 -~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1880)
+....|+.|+.+++.+++..+....---+.|+..+.+.+.|+. ......-+++.++..+
T Consensus 101 l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~---~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 101 IVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN---RSEDSQYGALYCLSIL 160 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT---SCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC---CChHHHHHHHHHHHHh
Confidence 2226899999999999998776665566789999999998863 3455556666665554
No 163
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.93 E-value=0.58 Score=61.64 Aligned_cols=150 Identities=14% Similarity=0.059 Sum_probs=103.0
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh----hhhcHHH
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----VQLKESW 1363 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----~~~~~~~ 1363 (1880)
..||.+..+-|.|..|+-+.+....-. ++.......|..+|.++|+.+.|.-.++.+-. +.+ ....+..
T Consensus 13 ~nLG~~~~~~G~~~eAi~~~~kAl~l~------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 13 NNLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 356777777888888888887766432 34466778899999999999999887775432 111 1223445
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcC
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMG 1441 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~ 1441 (1880)
|.++|+|++|+++|++.++..++. .+....+-.++..+|+++.-....+... .+...+.. ...+.+...+|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~----~~L~~~l~~~g 159 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY----CNLAHCLQIVC 159 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH----HHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH----hhhhhHHHhcc
Confidence 889999999999999988754432 4566778889999999987766655421 22222222 23356788899
Q ss_pred ChhhHHHHHh
Q 000194 1442 EWDQMAEYVS 1451 (1880)
Q Consensus 1442 ~Wd~~~~~~~ 1451 (1880)
+|+.-.+...
T Consensus 160 ~~~~A~~~~~ 169 (723)
T 4gyw_A 160 DWTDYDERMK 169 (723)
T ss_dssp CCTTHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9988765544
No 164
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=93.88 E-value=0.15 Score=52.43 Aligned_cols=108 Identities=11% Similarity=0.005 Sum_probs=76.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 000194 1576 ASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA 1655 (1880)
Q Consensus 1576 a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~ 1655 (1880)
..+.|+.|.++.|...+.+....+|. .+...+..+++.+..|+ ..+|+..+++.+.--.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~----------~~~~~~~la~~y~~~~~---~~~A~~~~~~al~~~p-------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ----------KSIKGFYFAKLYYEAKE---YDLAKKYICTYINVQE-------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH----------HHTTHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--------
Confidence 45567778888888888877654321 24556788999999995 6899999998775311
Q ss_pred cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000194 1656 ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1656 ~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1880)
-.+.++..+|.-.... ...++.+..|++|++++|+...+|+.+|....+
T Consensus 63 --------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 63 --------------RDPKAHRFLGLLYELE------ENTDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp --------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHc------CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0133455555555443 246789999999999999999999999987654
No 165
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.85 E-value=2.4 Score=51.16 Aligned_cols=141 Identities=8% Similarity=0.050 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGR-ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
.+...|...+.+..+.|+ ++.|...+.++...+|. .+.+.+-.+.++...|+ ..+|+..+++.+..
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----------~~~a~~~~g~~~~~~g~---~~eAl~~~~kal~l 195 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----------NYQVWHHRRVLVEWLRD---PSQELEFIADILNQ 195 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHh
Confidence 446778888888888997 99999999999888763 46777777888888885 46799988887652
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
-..+ ..--..++.++..+|+| ++.+..|.++++++|++..+|+..|.....+
T Consensus 196 dP~~---------------~~a~~~lg~~~~~~g~~-------------~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 196 DAKN---------------YHAWQHRQWVIQEFKLW-------------DNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp CTTC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CccC---------------HHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 1100 00112345555555554 4578999999999999999999999875542
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
... .....+..++..|-++|.+.
T Consensus 248 ~~~--------~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 248 TGY--------NDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp TCS--------CSHHHHHHHHHHHHHHHHHS
T ss_pred cCc--------chHHHHHHHHHHHHHHHHHC
Confidence 210 01122445579999999885
No 166
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=93.80 E-value=1.4 Score=42.37 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.....|...+....+.|+++.|...+.++....+. .+.+.+..+..+...|+ ..+|+..+++.+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----------NAEAWYNLGNAYYKQGD---YDEAIEYYQKALELD 73 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----------cHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhC
Confidence 34678999999999999999999999998776442 36677888888888885 688999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
.. . ...+..+|...... ...++....|+++.+.+|+...++..+|....
T Consensus 74 ~~------------------~----~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 74 PN------------------N----AEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TT------------------C----HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred Cc------------------c----HHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 10 0 22344445544433 24678899999999999999999988887654
No 167
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=93.64 E-value=1.2 Score=48.45 Aligned_cols=116 Identities=11% Similarity=0.017 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHH----------------HHHHHHhcCCcch
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA----------------YLKYQWSLGEDLK 1631 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~----------------~ak~lw~~g~~~~ 1631 (1880)
..+.++.-+....+.|+++.|...+.++...+|. .+...+. .+..+...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--- 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID----------RTEMYYWTNVDKNSEISSKLATELALAYKKNRN--- 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH----------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC---
Confidence 3567888888999999999999999998876542 2344444 7888888885
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000194 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1880)
Q Consensus 1632 ~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1880)
..+|+..+++.+..-.. .+.++..+|.-.... ...++.+..|+++++++|+.
T Consensus 70 ~~~A~~~~~~al~~~p~----------------------~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPN----------------------NVDCLEACAEMQVCR------GQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHHHHHHCTT----------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCC----------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHcCCCC
Confidence 68999999887753110 122333444433332 23478889999999999999
Q ss_pred hHHHHHHHHHHHH
Q 000194 1712 GKAWHSWALFNTA 1724 (1880)
Q Consensus 1712 ~k~w~~wA~~n~~ 1724 (1880)
..+|+.+|.+...
T Consensus 122 ~~a~~~lg~~~~~ 134 (208)
T 3urz_A 122 LAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 168
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.57 E-value=1.4 Score=52.54 Aligned_cols=199 Identities=11% Similarity=0.015 Sum_probs=116.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++...+|. .+......+.+++..|+ ..+|+..+++.+...
T Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 163 (365)
T 4eqf_A 97 GDAEAWQFLGITQAENENEQAAIVALQRCLELQPN----------NLKALMALAVSYTNTSH---QQDACEALKNWIKQN 163 (365)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhC
Confidence 34678899999999999999999999998877552 36777888899999995 678999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~~ 1724 (1880)
..... . .....-.+.++..+|..... ....++.+..|+++++.+|+ ...+|..+|.....
T Consensus 164 p~~~~---~---------~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 164 PKYKY---L---------VKNKKGSPGLTRRMSKSPVD------SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp HHHHC---C----------------------------C------CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred ccchH---H---------HhhhccchHHHHHHHHHHhh------hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 10000 0 00000011222222332221 12346677788888888887 67777777766543
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhh-HHH
Q 000194 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT-WLV 1803 (1880)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~-wl~ 1803 (1880)
. .-...|+..|-+++... + ........+-.+++..|...+....+++.+..-|... .+.
T Consensus 226 ~--------------g~~~~A~~~~~~al~~~-----p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 285 (365)
T 4eqf_A 226 S--------------GEFNRAIDAFNAALTVR-----P-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 285 (365)
T ss_dssp H--------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred C--------------CCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 1 12236677777777664 1 2244556666677777777776666666665444322 122
Q ss_pred HHHHHHHhccCCC
Q 000194 1804 VLPQIIARIHSNN 1816 (1880)
Q Consensus 1804 ~ipQLiaRi~~~~ 1816 (1880)
.+-.+..+.+..+
T Consensus 286 ~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 286 NLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHHTCCH
T ss_pred HHHHHHHHCCCHH
Confidence 3344444444443
No 169
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.50 E-value=0.37 Score=47.79 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----~~~~~~~~ 1364 (1880)
..|....+-|.|..|+.+.+..+... +......-.+..+|..+|+.+.+...++.+-. ... .-..+..|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45778888899999998887766432 34456677788888888888888776664322 110 12234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1880)
.++|+|++|+..|++.++..|+. .+...++-+||
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~---~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSN---EEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHHhc
Confidence 88888888888888887654443 34444554553
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.44 E-value=0.58 Score=48.62 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=87.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+..+.+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----------NPIYLSNRAAAYSASGQ---HEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999887653 46788888999999995 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
. ....++..+|.-...+ ...++.+..|+++++++|++..+|...+..
T Consensus 76 p----------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 76 P----------------------KYSKAWSRLGLARFDM------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp T----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred C----------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 1 0134455555555443 246789999999999999999888776654
No 171
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.41 E-value=0.28 Score=54.33 Aligned_cols=192 Identities=10% Similarity=0.026 Sum_probs=109.6
Q ss_pred HHHHHHHhCCCCH--hHHHHHHHHHHhhhcCCcccccHHHH-HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCcc--
Q 000194 601 LSAIFAALNDEDF--DVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER-- 675 (1880)
Q Consensus 601 l~~L~~~l~D~~~--~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~-- 675 (1880)
++.+...|+.++. +++..|...+..++..++..-.-... ..+ +.|-.+..+ ++...++.|++.|..|+....+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~I-p~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGI-LKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHH-HHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCH-HHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence 6667777776665 88888888888888766432111111 112 223333345 6788999999999999864322
Q ss_pred -cccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHh-------c-------
Q 000194 676 -LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL-------D------- 740 (1880)
Q Consensus 676 -~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~-------d------- 740 (1880)
.+.. ...++.|+..++.. .+..++..+..++-.|+...... ......-+|.+++.+. +
T Consensus 88 ~~I~~--~GaI~~Lv~lL~~~----~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 88 LEVAE--LNGVPRLLQVLKQT----RDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHH--TTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHH--cCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCccccccccc
Confidence 1111 13566677777642 26778888888888887532211 1122334666655331 1
Q ss_pred -CCchhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHH
Q 000194 741 -GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG-----ELVWSTRREVLKVLGIM 801 (1880)
Q Consensus 741 -~~~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~-----~~~~~vr~~~l~~lg~l 801 (1880)
..+.+++.+|..+|..++......=.-....+.+++.|+.+++. ..+.+.++.++.+|.-+
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 12457889999999988753211000011234567777777643 12345566666555444
No 172
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.32 E-value=3.9 Score=48.62 Aligned_cols=184 Identities=11% Similarity=0.061 Sum_probs=108.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD----------NQTALMALAVSFTNESL---QRQACEILRDWLRYT 162 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 35778889999999999999999999998877552 46778888899999995 688999999876532
Q ss_pred cCCCcccccc-ccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAA-STSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNT 1723 (1880)
Q Consensus 1647 ~~~~~~~~~~-~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~ 1723 (1880)
.......... ...............+.++ ..|+| ++.+..|.++++.+|+ ...+|...|....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF-------------LEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp TTTGGGCC---------------CTTHHHH-HHHHH-------------HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH-------------HHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 1110000000 0000000000001223332 44443 5566777777777777 6677777776644
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.. .-...|+..|-+++... + ........+-.+.+..|...+....+++.+..-|
T Consensus 229 ~~--------------g~~~~A~~~~~~al~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 229 LS--------------GEYDKAVDCFTAALSVR-----P-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp HT--------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred Hc--------------CCHHHHHHHHHHHHHhC-----c-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 31 12235666676766653 1 2233445556666666776666665655554333
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.26 E-value=1.1 Score=45.05 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+..+.+.|+++.|...+.++...++... ..+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-------DQAVLHRNRAACHLKLED---YDKAETEASKAIEKD 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-------HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-------HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhC
Confidence 4589999999999999999999999999987654200 015667778888888884 678999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
... ..-...++.++...|+ .++....|+++++++|+...+|..++..
T Consensus 96 ~~~---------------~~~~~~~a~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 96 GGD---------------VKALYRRSQALEKLGR-------------LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp SCC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ccC---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 100 0011224444444444 5778899999999999999999877765
No 174
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=92.83 E-value=2.7 Score=44.43 Aligned_cols=101 Identities=10% Similarity=0.152 Sum_probs=77.9
Q ss_pred ChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhhcCcccccCCcchHHHHHH
Q 000194 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA--AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778 (1880)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~--~~~~r~~Al~~Lg~l~~~~~~~i~p~~~~p~ll~~L 778 (1880)
+.......+..+..|...-.-.+.||+.+++|.++.++-... ....|+-|...|+.++...|.. .| ...|.++..+
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~-y~-~L~~RI~~tl 136 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS-YK-TLAPRVLKTL 136 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT-ST-THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc-Cc-hHHHHHHHHH
Confidence 455566667777777777677899999999999999885321 1269999999999999998864 22 2348889999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHcc
Q 000194 779 LKMLNGE-LVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 779 l~~L~~~-~~~~vr~~~l~~lg~lga 803 (1880)
.+.+.++ .+...+.-|+..+..+|.
T Consensus 137 ~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 137 KGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 8888543 478888889888888873
No 175
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.77 E-value=1.4 Score=42.97 Aligned_cols=115 Identities=10% Similarity=0.001 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+..+.+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..+++.+....
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------DARGYSNRAAALAKLMS---FPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCC
Confidence 3678999999999999999999999998887653 46778888899999995 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc------ccchHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA------TKWGKAWHSWALF 1721 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~------~~~~k~w~~wA~~ 1721 (1880)
. ..+++..+|.-...+ ...++.+..|+++.+++ |+...+|..++..
T Consensus 70 ------------------~----~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 ------------------N----FVRAYIRKATAQIAV------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp ------------------T----CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ------------------C----cHHHHHHHHHHHHHH------hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 0 133444555544443 24578899999999999 8888888777765
Q ss_pred HH
Q 000194 1722 NT 1723 (1880)
Q Consensus 1722 n~ 1723 (1880)
..
T Consensus 122 ~~ 123 (126)
T 3upv_A 122 SQ 123 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 176
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.70 E-value=10 Score=43.63 Aligned_cols=157 Identities=13% Similarity=0.038 Sum_probs=96.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch------h-----
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE------L----- 1355 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~------~----- 1355 (1880)
..|....+.|.|..|+.+++......+ .++ ......+..+|...|+++.+...+..+... .
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 457788888999999999987765321 122 245568899999999999998877643211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhC--------------------HHHHHH
Q 000194 1356 DVQLKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALAR--------------------WEELNN 1412 (1880)
Q Consensus 1356 ~~~~~~~~~e~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~--------------------w~~l~~ 1412 (1880)
-....+..|...|+|++|+..|++.+... .++.........+-.++..+|+ ++.-..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 01123345889999999999999976532 1111112234556677788888 765554
Q ss_pred HHhhhcC----CCChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1413 LCKEYWT----PAEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1413 ~~~~~~~----~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
..+.... ..+...........+...+..|+|+.-..+..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 207 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4432110 00111222233344567778888887766554
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=92.64 E-value=1.2 Score=43.93 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|-.....+.+.|+++.|.....++..++|. .+....-.+.+++..|+ -.+|+..+++.+.-...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----------~~~~~~nlg~~~~~~~~---~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----------NITFYNNKAAVYFEEKK---FAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHhHHHHHHHhhh---HHHHHHHHHHHHHhCcc
Confidence 556778889999999999999999999888763 35667778888889995 68999999887643211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1880)
........+++|..+|.....+ ...++.++.|++|++.+|+
T Consensus 75 ---------------~~~~~~~~a~~~~~lg~~~~~~------~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 ---------------TRADYKLIAKAMSRAGNAFQKQ------NDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------------TTCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSCC
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCcC
Confidence 1223456899999999988776 4689999999999988775
No 178
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.55 E-value=7.6 Score=44.88 Aligned_cols=178 Identities=12% Similarity=-0.005 Sum_probs=118.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..++..|+ ..+|+..+++.+...
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----------DIAVHAALAVSHTNEHN---ANAALASLRAWLLSQ 119 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45788999999999999999999999998876542 36777888899999995 678999998876532
Q ss_pred cCCCccccccccccccccCcchhhH------HHHHHHH-hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLI------ARVYLKL-GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~------a~~~~~l-g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1880)
..... ..... +.....+ |.|.. ......++....|.++.+.+|+...+|...|
T Consensus 120 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 120 PQYEQ---------------LGSVNLQADVDIDDLNVQSEDFFF-----AAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp TTTTT---------------C--------------------CCT-----TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CccHH---------------HHHHHhHHHHHHHHHHHHHHhHHH-----HHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 11100 00000 0000011 21100 0123457788999999999999999999888
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
...... .-...|++.|-+++... .........+-.+++..|...+....+++.+..-|
T Consensus 180 ~~~~~~--------------~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 180 VLYNLS--------------NNYDSAAANLRRAVELR------PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHh--------------ccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 775531 12347788888888764 22345566777788888888877777777665444
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.39 E-value=2.6 Score=40.86 Aligned_cols=121 Identities=11% Similarity=0.020 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..+++.+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT----------NMTYITNQAAVYFEKGD---YNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcc
Confidence 3578999999999999999999999998876542 36777888889888885 6789999988765422
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
.. .......+.++..+|...... ...++....|+++.+..| ....+...+....
T Consensus 70 ~~---------------~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 70 EN---------------REDYRQIAKAYARIGNSYFKE------EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HS---------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred cc---------------chhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 10 112234467777788777654 357889999999999988 4677777665543
No 180
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.29 E-value=1.6 Score=54.55 Aligned_cols=142 Identities=14% Similarity=0.141 Sum_probs=100.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc---------CCcchHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL---------GEDLKRKEAFA 1637 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~---------g~~~~~~~Al~ 1637 (1880)
.+...|..++.+..+.|+++.|...+.++...+|. +......+.+++.. | +..+|+.
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~lg~~~~~~~~~~~~~~~g---~~~~A~~ 200 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----------KVSLQNLSMVLRQLQTDSGDEHSR---HVMDSVR 200 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----------HHHHHHHHHHHTTCCCSCHHHHHH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------HHHHHHHHHHHHHhccCChhhhhh---hHHHHHH
Confidence 45789999999999999999999999999887542 46667777788777 6 4678999
Q ss_pred HHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc---cchHH
Q 000194 1638 RLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT---KWGKA 1714 (1880)
Q Consensus 1638 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~---~~~k~ 1714 (1880)
.+++.+...... ..--..++.+|..+ +.. . +.+....++.+..|++|++++| +...+
T Consensus 201 ~~~~al~~~p~~---------------~~~~~~lg~~~~~~--~~~-~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 201 QAKLAVQMDVLD---------------GRSWYILGNAYLSL--YFN-T--GQNPKISQQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp HHHHHHHHCTTC---------------HHHHHHHHHHHHHH--HHH-T--TCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred HHHHHHHhCCCC---------------HHHHHHHHHHHHHH--HHh-h--ccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence 988876531100 01112345555555 000 0 0001235788999999999999 99999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
|+.+|..+... .-...|+..|-+++.+.
T Consensus 261 ~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 261 HLNRATLHKYE--------------ESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC
Confidence 99999886641 12347899999999885
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=92.01 E-value=0.51 Score=46.75 Aligned_cols=93 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh-----------
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----------- 1356 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----------- 1356 (1880)
..||....+.|.|.+|+.+.+..+.-. ++.......+..+|..+|+.+.+.-.+..+-. ..+
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~------p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELD------PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 468899999999999999988776532 34456777889999999999988776654321 000
Q ss_pred hhhcHHHHHHhcCHHHHHHHHHHHHhccCCC
Q 000194 1357 VQLKESWYEKLQRWDDALKAYTNKASQASNP 1387 (1880)
Q Consensus 1357 ~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~ 1387 (1880)
....+..++++|+|++|+++|++.+...+++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 1123446889999999999999988765554
No 182
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=91.76 E-value=19 Score=47.23 Aligned_cols=262 Identities=9% Similarity=0.054 Sum_probs=147.0
Q ss_pred HHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC--CCcchhHHHHHHHHHHHH
Q 000194 107 KVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG--DRVEYRRFAAVLILKEMA 181 (1880)
Q Consensus 107 ~~~~~~~~L~~~l~~---~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~--~~~~~~R~aA~~~l~~la 181 (1880)
...+|..-+..++-. +.+..++..+..++..|+........-.++..++++-+-|.+ -....+-.+|+..+..++
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 345565544322211 568899999999999999852211244677788888877754 333334466777777666
Q ss_pred hhc--CccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-------------------------------
Q 000194 182 ENA--STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKR------------------------------- 228 (1880)
Q Consensus 182 ~~~--p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r------------------------------- 228 (1880)
.-. ...+.+|+..++...+.|+-=.++.--..+...+..++..+.-.
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 542 23567899999999999885334433333444444443322110
Q ss_pred ------c-----------hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhh
Q 000194 229 ------E-----------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLE 291 (1880)
Q Consensus 229 ------~-----------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~ 291 (1880)
+ .....+|...+++.+..-+.+..+.....+--.++..++...++ +-++.++..+..+..
T Consensus 492 ~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 492 SKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFW 568 (799)
T ss_dssp SSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Confidence 0 01234677777777666555432222222211234444444333 233444444554443
Q ss_pred cc-hhHHHHHHHHH----hHhHhhhChhhHHHHHHHHHHHHHHHhhcCC-----C-----Ccc----hHHHHHHHHHhhc
Q 000194 292 HR-DRLVRLSITSL----LPRIAHFLRDRFVTNYLKICMNHILTVLRIP-----A-----ERD----SGFIALGEMAGAL 352 (1880)
Q Consensus 292 ~~-~~~Vr~~~~~~----i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~-----~-----~r~----~a~~alg~la~~v 352 (1880)
.. .+...+++..+ +..++..+|+ ..+.+++.+...+...+.+. . .|. --+..|+.+....
T Consensus 569 ~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~ 647 (799)
T 1vsy_4 569 SNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNC 647 (799)
T ss_dssp SCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcC
Confidence 22 12222333333 4566677787 44556666666665544332 0 122 3566777777888
Q ss_pred hhhhhhhhhHHHHHHHHhhc
Q 000194 353 DGELFHYLPTITSHLREAIA 372 (1880)
Q Consensus 353 ~~~~~p~l~~i~~~l~~~l~ 372 (1880)
|..+.+|-+++++.+...+.
T Consensus 648 g~~lL~y~deL~~il~~~~~ 667 (799)
T 1vsy_4 648 HESLLEYSDELITFMKYLYD 667 (799)
T ss_dssp GGGGGTTHHHHHHHHHHHHH
T ss_pred cHHHHccHHHHHHHHHHHHH
Confidence 88888999999998887664
No 183
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=91.72 E-value=6.7 Score=39.89 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=85.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|...+....+.|+++.|...+.++...++. .+.+.+..+.+....|+ ..+|+..+++.+....
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTEC---YGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCc
Confidence 3678999999999999999999999998876542 36777888888888885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
. .+.++..+|.-.... ...++....|+++++.+|+...+|..++..
T Consensus 79 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 79 K----------------------YIKGYYRRAASNMAL------GKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred c----------------------cHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 123445555554443 246788999999999999998888666654
No 184
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=91.70 E-value=2.8 Score=47.32 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=107.1
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccc
Q 000194 1580 RKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTS 1659 (1880)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~ 1659 (1880)
..+|+++.|...+.++....+...+ ..+.+.+..+......|+ ..+|+..+++.+.....
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~----------- 75 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDD------ERAQLLYERGVLYDSLGL---RALARNDFSQALAIRPD----------- 75 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHH------HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC-----------
T ss_pred CccchHHHHHHHHHHHHhcccccCc------hhHHHHHHHHHHHHHccc---HHHHHHHHHHHHHcCCC-----------
Confidence 4457788888888887765321111 135677788888888995 68899999887653110
Q ss_pred cccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchh
Q 000194 1660 LTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAP 1739 (1880)
Q Consensus 1660 ~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~ 1739 (1880)
.+.++..+|...... ...++.+..|+++++.+|+...+|..+|......
T Consensus 76 -----------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-------------- 124 (275)
T 1xnf_A 76 -----------MPEVFNYLGIYLTQA------GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-------------- 124 (275)
T ss_dssp -----------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--------------
T ss_pred -----------cHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh--------------
Confidence 123344555554443 3467889999999999999999999998876541
Q ss_pred hHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHH
Q 000194 1740 QFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLV 1803 (1880)
Q Consensus 1740 ~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~ 1803 (1880)
.-...|+..|-+++... +.+. .....+.+.+..|+..+....+.+.+...|...|..
T Consensus 125 g~~~~A~~~~~~a~~~~-----~~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQDD-----PNDP--FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW 181 (275)
T ss_dssp TCHHHHHHHHHHHHHHC-----TTCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH
T ss_pred ccHHHHHHHHHHHHHhC-----CCCh--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH
Confidence 12346788888888774 2222 222333444555666666666666666666555543
No 185
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=91.57 E-value=1.8 Score=44.17 Aligned_cols=115 Identities=10% Similarity=-0.063 Sum_probs=82.3
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
.+....|..++++..+.|+++.|...+.++...+|. .+.+.+..+.+....|+ ..+|+..+++.+.-
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----------DPKAHRFLGLLYELEEN---TDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHh
Confidence 345677899999999999999999999999988763 47788888999999995 68899999887653
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHH-HHHHHHhhcccchHHHHHHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIA-AYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~-~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
-... ..--..+|.+|...|++ ++..+ ++++|++++|++..+|.-.+..
T Consensus 95 ~p~~---------------~~~~~~la~~~~~~~~~-------------~~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 95 NPTQ---------------KDLVLKIAELLCKNDVT-------------DGRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp CTTC---------------HHHHHHHHHHHHHHCSS-------------SSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCCC---------------HHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 1100 00112234444444443 23344 4589999999999998866654
No 186
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=91.52 E-value=1 Score=43.88 Aligned_cols=108 Identities=13% Similarity=-0.024 Sum_probs=55.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++......+.|..|+.+++...... ++.......+..+|..+|+.+.+...+...... .. ....+..+
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555556666667776666544321 222345555666666666666666555532211 00 11122345
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
.+.|+|++|...|++.+...++. ......+-.|+..+|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDN---ETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHhc
Confidence 66666666666666665543322 2233444455555554
No 187
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.37 E-value=30 Score=41.55 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=80.2
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHH
Q 000194 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEV 150 (1880)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v 150 (1880)
.+.+.+|+...|...|..||-++-.++.- ..+.|.++.|.+++. .+|..-+...-++|-.|.... ...-+
T Consensus 67 i~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLq-tdd~~E~~~V~~sL~sllk~D---pk~tl 136 (507)
T 3u0r_A 67 INAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQ-TDDSAEFNLVNNALLSIFKMD---AKGTL 136 (507)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHC---HHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHh-ccchHHHHHHHHHHHHHHhcC---hHHHH
Confidence 45577899999999888888777777533 247899999999997 668888888888888877641 11122
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHH-HHHHHHhcCC
Q 000194 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFV-DAIWVALRDP 206 (1880)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~-~~i~~~l~D~ 206 (1880)
...+..+.. .++..|.-.+.+|+.=....|. .+...+..++ +.|-+.|.|-
T Consensus 137 ~~lf~~i~~-----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 137 GGLFSQILQ-----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHH-----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcc-----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 233333332 3467788888887765555443 5555555544 4566677554
No 188
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.37 E-value=4.5 Score=39.77 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+..+.+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALELD 73 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999998877653 36778888889988885 678999988876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc-----chHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK-----WGKAWHSWALF 1721 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~-----~~k~w~~wA~~ 1721 (1880)
.. ..+++..+|.-.... ...++.+..|+++++++|+ ....|...+..
T Consensus 74 p~----------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 74 GQ----------------------SVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred ch----------------------hHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 10 123445555544443 2457889999999999987 66677666655
Q ss_pred HHH
Q 000194 1722 NTA 1724 (1880)
Q Consensus 1722 n~~ 1724 (1880)
...
T Consensus 126 ~~~ 128 (137)
T 3q49_B 126 KKK 128 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 189
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.29 E-value=3.4 Score=47.23 Aligned_cols=193 Identities=17% Similarity=0.204 Sum_probs=122.0
Q ss_pred HhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH---HH---HHHHHHHHHHhcCCCChHhHHHHHHHHHHHHH
Q 000194 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA---LR---RHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1880)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~---l~---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1880)
.+.+..|...+..=+++.|..+..++..+....++.=.|. +. .++..++...+ .++..-.+..+|-+.++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe----~~diAl~~G~mLRecir 152 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEIALNCGIMLRECIR 152 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTTHHHHHHHHHHHHT
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc----cchhHhHHHHHHHHHHH
Confidence 3578888888888899999999999999988776543332 21 12222232222 22322233333433333
Q ss_pred hC--cccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhc----CCchhhhHHhHHHHHHHHHhcCCchh
Q 000194 672 NC--ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAAVT 745 (1880)
Q Consensus 672 ~~--~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~l~p~l~~~l~d~~~~~ 745 (1880)
+- ...+. | .+.+..+...+.. ++-++.+.++.++.++-..- .+.+..+++.++..+-+.++. .+--
T Consensus 153 ~e~la~~iL-~-~~~f~~fF~yv~~-----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYV 224 (341)
T 1upk_A 153 HEPLAKIIL-W-SEQFYDFFRYVEM-----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYV 224 (341)
T ss_dssp SHHHHHHHH-H-SGGGGHHHHHTTC-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHH
T ss_pred hHHHHHHHh-c-cHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-Ccch
Confidence 20 00000 0 0011122233333 37888999999998876432 244566777888888775554 4566
Q ss_pred hHHHHHHHHHHHHhhcC--cccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcc
Q 000194 746 KREVAVSTLGQVVQSTG--YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1880)
Q Consensus 746 ~r~~Al~~Lg~l~~~~~--~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lga 803 (1880)
.|..+++-||.+...-. .++.-|..-|+-|..++.+|++. +..++.+|++++-...|
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 78899999998886533 23566767789999999999854 89999999999887654
No 190
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=91.28 E-value=5 Score=48.55 Aligned_cols=195 Identities=11% Similarity=-0.025 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....++..+......|+++.|...+.++....+.. +. ....+.+..+.+.+..|+ ..+|+..+++.+....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~-----~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED-LR-----TLSAIYSQLGNAYFYLGD---YNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HH-----HHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-hh-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 36678889999999999999999999988765421 00 002456778888888895 6789999888765432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh------cccchHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC------ATKWGKAWHSWALF 1721 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~------~~~~~k~w~~wA~~ 1721 (1880)
. ..+....+.++..+|...... ...++....|.++.++ .+....+|..+|..
T Consensus 118 ~----------------~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 118 S----------------MNDRLGEAKSSGNLGNTLKVM------GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp H----------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H----------------ccCchHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 1 123355677888888877665 3578899999999888 44556677777777
Q ss_pred HHHHHHhhhc---cCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000194 1722 NTAVMSHYTL---RGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1880)
Q Consensus 1722 n~~~~~~~~~---~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1880)
+...-+.... .............|++.|-+++.+................+-.+++..|+..+....+.+.+
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6554320000 00011122345677777777766532111111122233444555666677666555555544
No 191
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=91.25 E-value=22 Score=42.40 Aligned_cols=178 Identities=8% Similarity=-0.004 Sum_probs=118.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 000194 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQS 1654 (1880)
Q Consensus 1575 ~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~ 1654 (1880)
.+......|+++.|...+.++.......... .....+.+..+.+.+..|+ ..+|+..+++.+.-....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~----- 176 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDR----IEKAEFFFKMSESYYYMKQ---TYFSMDYARQAYEIYKEH----- 176 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhC-----
Confidence 7888999999999999999987652211100 0123556677778888885 688999998876544321
Q ss_pred ccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch------HHHHHHHHHHHHHHHh
Q 000194 1655 AASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG------KAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1655 ~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~------k~w~~wA~~n~~~~~~ 1728 (1880)
.......+.++..+|.-.... ...++.+.+|.+|.++.++.. .+|+..|..+..
T Consensus 177 ----------~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~---- 236 (383)
T 3ulq_A 177 ----------EAYNIRLLQCHSLFATNFLDL------KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS---- 236 (383)
T ss_dssp ----------STTHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred ----------ccchHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----
Confidence 112445678888888877665 357899999999998876543 355555555432
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
.+ -...|++.|-+++.+................+-.+++..|+..+....+++.+.
T Consensus 237 ---~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 237 ---QS-------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp ---TT-------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CC-------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 234788888888876322111133455567777788888988877776666653
No 192
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.20 E-value=13 Score=42.41 Aligned_cols=126 Identities=13% Similarity=0.148 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCChHHHhHHHHHHhch--------hh-----hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCC
Q 000194 1326 AVVEALIHINNQLHQHEAAVGILTYAQKE--------LD-----VQLKESWYEKLQRWDDALKAYTNKASQA-----SNP 1387 (1880)
Q Consensus 1326 ~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--------~~-----~~~~~~~~e~lg~W~~Al~~y~~~~~~~-----~~~ 1387 (1880)
.....|..+|...|+.+.+.-.++.+... .. ....+..|...|+|++|+..|++.+... .+.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44556777777778877777666543220 00 1122335778899999999998877531 222
Q ss_pred chhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC------CChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1388 HIVLEATLGRMRCLAALARWEELNNLCKEYWTP------AEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1388 ~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~------~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
.........+-.|+..+|+|+.-....+..... .+...........+.+.+..|+|+.-.++..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 222445567778888899987766555432210 0111122223344667778888887766554
No 193
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.01 E-value=1.4 Score=49.82 Aligned_cols=124 Identities=14% Similarity=0.000 Sum_probs=83.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh-------hhhcH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD-------VQLKE 1361 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~-------~~~~~ 1361 (1880)
.+|....+-|.|..|+-+++......+. ++......-.|..+|..+|+.+.+...++..-.. ++ .-..+
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 4577778889999999998877654321 1112456678899999999999999888754321 10 11223
Q ss_pred HHHHH--------hcCHHHHHHHHHHHHhccCCCchhHHhH--------------hhHhHHHHHhhCHHHHHHHHhh
Q 000194 1362 SWYEK--------LQRWDDALKAYTNKASQASNPHIVLEAT--------------LGRMRCLAALARWEELNNLCKE 1416 (1880)
Q Consensus 1362 ~~~e~--------lg~W~~Al~~y~~~~~~~~~~~~~~~~~--------------~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1880)
..|.+ .|+|++|+..|++.+...++........ ..+-+|+..+|+|+.-....+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45677 9999999999999887655432211221 4556778888888766555543
No 194
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=90.96 E-value=1.8 Score=42.19 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=59.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-----~~~~~~~~ 1364 (1880)
.++....+.+.|..|+.+++...... +......-.+..+|...|+.+.+...++....... .......+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 45666667777777777776554321 22234445566666666666666665553321100 01122235
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHH
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELN 1411 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~ 1411 (1880)
.+.|+|++|+..|++.+...++. ......+..++...|+++.-.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHH
Confidence 56666777777666655433221 223344455555556555443
No 195
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=90.77 E-value=1.3 Score=51.17 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=97.9
Q ss_pred HHHHHHHhccchhhhhhhccchhccccccc--CCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---------hh--
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNR--MDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---------LD-- 1356 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~--~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---------~~-- 1356 (1880)
.++......|.|.+|+.+++.......... ..+........|..+|..+|+.+.+...++.+... ..
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 456666677778888877766553210000 01122345678899999999999998877643221 00
Q ss_pred --hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-------CCC
Q 000194 1357 --VQLKESWYEKLQRWDDALKAYTNKASQA-----SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-------PAE 1422 (1880)
Q Consensus 1357 --~~~~~~~~e~lg~W~~Al~~y~~~~~~~-----~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-------~~~ 1422 (1880)
....+..|...|+|++|+.+|++.+... .++.........+-.|+..+|+|+.-....+.... ...
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1123345889999999999999987542 22222234556778889999999876655543211 111
Q ss_pred hHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1423 PAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1423 ~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
+ .........+.+...+|+|+.-..+..
T Consensus 192 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 192 P-NVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp H-HHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 122233345667788888887766544
No 196
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=90.76 E-value=6.2 Score=44.31 Aligned_cols=168 Identities=11% Similarity=-0.000 Sum_probs=109.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...|...+....+.|+++.|...+.++...+|. .+.+.+..+.+++..|+ ..+|+..+++.+...
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----------MPEVFNYLGIYLTQAGN---FDAAYEAFDSVLELD 107 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998877552 36777888899999995 689999999877532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.. . ..++..+|.-.... ...++.+..|+++++.+|+....+. |...+...
T Consensus 108 ~~------------------~----~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~- 157 (275)
T 1xnf_A 108 PT------------------Y----NYAHLNRGIALYYG------GRDKLAQDDLLAFYQDDPNDPFRSL-WLYLAEQK- 157 (275)
T ss_dssp TT------------------C----THHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHH-
T ss_pred cc------------------c----cHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHh-
Confidence 10 0 12333444443332 2357889999999999998764333 22222110
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.-...|+..|-+++...+ .. .....+..+.+..++..+..+.+.+.+..-|
T Consensus 158 -------------~~~~~A~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 158 -------------LDEKQAKEVLKQHFEKSD-----KE--QWGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp -------------HCHHHHHHHHHHHHHHSC-----CC--STHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred -------------cCHHHHHHHHHHHHhcCC-----cc--hHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 123466777767666532 11 1234456666666666556666666665544
No 197
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=90.72 E-value=7.3 Score=37.51 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~ 1649 (1880)
..|...+....+.|+++.|...+.++....+. .+......+......|+ ..+|+..+++.+.....
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----------SAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc----------chhHHHHHHHHHHHhcC---HHHHHHHHHHHHHHCCC-
Confidence 46888899999999999999999888765432 35666777888888885 67899998886643110
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhh
Q 000194 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729 (1880)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~ 1729 (1880)
...++..+|...... ...++..+.|..+.+..|+...+|..+|.....
T Consensus 68 ---------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----- 115 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----- 115 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----
T ss_pred ---------------------chHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----
Confidence 022344445444332 346788999999999999999999888876542
Q ss_pred hccCCCCchhhHHHHHHHHHHHHHhh
Q 000194 1730 TLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1880)
Q Consensus 1730 ~~~~~~~~~~~~~~~ai~~y~~si~~ 1755 (1880)
. .-...|+..|-+++..
T Consensus 116 --~-------~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 116 --Q-------GDYDEAIEYYQKALEL 132 (136)
T ss_dssp --T-------TCHHHHHHHHHHHHHH
T ss_pred --H-------ccHHHHHHHHHHHHcc
Confidence 1 1234677777776655
No 198
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.46 E-value=1.6 Score=44.70 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=79.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+.-.
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----------~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----------NVDYIMGLAAIYQIKEQ---FQQAADLYAVAFALG 100 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhC
Confidence 45889999999999999999999999999988763 47778888888888995 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1880)
... ..---.++.||..+|+ .++.+..|++|++++|+..
T Consensus 101 P~~---------------~~~~~~lg~~~~~lg~-------------~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KND---------------YTPVFHTGQCQLRLKA-------------PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSC---------------CHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCCCHH
T ss_pred CCC---------------cHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCHH
Confidence 110 1111235666655555 4788899999999998654
No 199
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=90.39 E-value=14 Score=42.12 Aligned_cols=203 Identities=10% Similarity=-0.038 Sum_probs=118.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
....|..-+....+.|+++.|...+.+.....+... . . .....+.+..+.+....|+ ..+|+..+++.+....
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~ 146 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-E-F--QQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-H-H--HHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-h-H--HHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHh
Confidence 356777788888999999999999888776543210 0 0 0001222333444455563 6789998887653211
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh---cccch----HHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC---ATKWG----KAWHSWAL 1720 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~---~~~~~----k~w~~wA~ 1720 (1880)
. ..+....+.++..+|.-.... ...++.+.+|++|.++ .++.. .+|+..|.
T Consensus 147 ~----------------~~~~~~~~~~~~~lg~~y~~~------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 147 T----------------GIDVYQNLYIENAIANIYAEN------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp C----------------SSCTTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred c----------------CCchHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 1 112233577788888777654 3578999999999854 33322 45555555
Q ss_pred HHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHH-HHHHHhcc---cC
Q 000194 1721 FNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEV-QIALQKGF---AH 1795 (1880)
Q Consensus 1721 ~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v-~~~~~~~~---~~ 1795 (1880)
.+.. .+ -...|+..|-+++.+... .+.... -.....+=.+++..|+.++. ...+++.+ ..
T Consensus 205 ~y~~-------~~-------~y~~Al~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 205 ALYL-------DS-------RYEESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHH-------TT-------CHHHHHHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------Hh-------hHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 5442 11 234778888887776421 111222 23345555667787877665 44455433 45
Q ss_pred CChhhHHHHHHHHHHhccC
Q 000194 1796 VNINTWLVVLPQIIARIHS 1814 (1880)
Q Consensus 1796 ip~~~wl~~ipQLiaRi~~ 1814 (1880)
+....+..-+-++|+|+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~ 288 (293)
T 2qfc_A 270 LEMHAYKEALVNKISRLEH 288 (293)
T ss_dssp TTCHHHHHHHHHHHHHC--
T ss_pred hCcHhhHHHHHHHHHHHhh
Confidence 5566667788888888844
No 200
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=90.32 E-value=1.8 Score=47.03 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=87.5
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHHHHhhhccCCCccccccCCccccccccchhHHHHHHHHHHHHHHhcCCChhHHHH
Q 000194 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHS 580 (1880)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~ 580 (1880)
+....++..+..++...||..|+..++++ . . ..++++.+-.....|+.+.||..
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~-----------------------~~~~L~~ir~~va~D~~WrVre~ 123 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K-----------------------DKEILIFMRDEVSKDNNWRVQEV 123 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T-----------------------SHHHHHHHHHTGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--C-----------------------cHHHHHHHHHHhCCCCCccHHHH
Confidence 34455666777888889998888765554 1 1 12233333332467888999988
Q ss_pred HHHhccCCCCcchhh--ccHh-hHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChH
Q 000194 581 IFSSLYGNRGFDDFL--AQAD-CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1880)
Q Consensus 581 ~l~~l~~~~~fd~~L--~~~~-~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1880)
+..++. +++ ..++ .++.+..-..|+++.||+.|+..+---+.. |.. . .-...+...+..+..+ ++.-
T Consensus 124 lA~a~~------~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~-k-~dp~~ll~iL~~L~~D-~s~y 193 (240)
T 3l9t_A 124 LAKAFD------EFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYF-K-ENPNEAIRRIADLKED-VSEY 193 (240)
T ss_dssp HHHHHH------HHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT-T-TCHHHHHHHHHTTTTC-SCHH
T ss_pred HHHHHH------HHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chh-h-cCHHHHHHHHHHhcCC-hHHH
Confidence 877764 222 1223 466777788899999999888875322221 211 0 1122344556666666 6677
Q ss_pred hHHHHHHHHHHHHHhCcccccC
Q 000194 658 CREESAKLLGCLIRNCERLIRP 679 (1880)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~p 679 (1880)
+|..-++.|-++.+..|+.+..
T Consensus 194 VrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 194 VRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhhCHHHHHH
Confidence 7877888888888877755433
No 201
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.28 E-value=2.3 Score=43.62 Aligned_cols=116 Identities=10% Similarity=0.001 Sum_probs=72.9
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1880)
.+|......+.|..|+.+++...... +......-.+..+|..+|+.+.+...++.+... . . ....+..+
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56777788888999998887765432 233556677888888899988888777643321 1 0 11223457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHH
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNN 1412 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~ 1412 (1880)
.++|++++|..+|++.+...++... .....+....+.+.|+++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888765443221 1112344444556666655443
No 202
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=90.26 E-value=2.3 Score=42.66 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=77.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----------DARYFLGLGACRQSLGL---YEQALQSYSYGALMD 82 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998877653 46777888888888885 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1880)
... ....-.++.+|..+|+ .++....|+.+++++|+....
T Consensus 83 p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 83 INE---------------PRFPFHAAECHLQLGD-------------LDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHHTCGGG
T ss_pred CCC---------------cHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCcch
Confidence 100 0111234555554444 477889999999998866543
No 203
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.26 E-value=1.3 Score=58.34 Aligned_cols=134 Identities=16% Similarity=-0.013 Sum_probs=101.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|+..+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+...
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 497 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW----------RWRLVWYRAVAELLTGD---YDSATKHFTEVLDTF 497 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45788999999999999999999999998877552 46788888888989995 689999999876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
... ..-...++.++..+|+|. + +..|++|++++|+...+|+..|....+.
T Consensus 498 P~~---------------~~~~~~lg~~~~~~g~~~-------------~-~~~~~~al~~~P~~~~a~~~lg~~~~~~- 547 (681)
T 2pzi_A 498 PGE---------------LAPKLALAATAELAGNTD-------------E-HKFYQTVWSTNDGVISAAFGLARARSAE- 547 (681)
T ss_dssp TTC---------------SHHHHHHHHHHHHHTCCC-------------T-TCHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred CCC---------------hHHHHHHHHHHHHcCChH-------------H-HHHHHHHHHhCCchHHHHHHHHHHHHHc-
Confidence 110 111234677777777663 4 5789999999999999999999875541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
+ -...|+..|-+++.+.
T Consensus 548 ------g-------~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 548 ------G-------DRVGAVRTLDEVPPTS 564 (681)
T ss_dssp ------T-------CHHHHHHHHHTSCTTS
T ss_pred ------C-------CHHHHHHHHHhhcccC
Confidence 1 2347888998888774
No 204
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.12 E-value=3.3 Score=42.08 Aligned_cols=106 Identities=14% Similarity=0.052 Sum_probs=77.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.-.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY----------DSRFFLGLGACRQAMGQ---YDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998877653 46777888888888885 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1880)
... ....-.++.+|..+|+ .++....|.++++++|+...
T Consensus 86 p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 86 IXE---------------PRFPFHAAECLLQXGE-------------LAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHTTCGG
T ss_pred CCC---------------chHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCcCCCc
Confidence 100 0111223444444444 57788999999999886543
No 205
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=90.06 E-value=5.1 Score=42.76 Aligned_cols=126 Identities=10% Similarity=-0.064 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC------ChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG------PPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~------~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
...|...+..+.+.|+++.|...+.++....+........... ...+.+..+.+++..|+ ..+|+..++..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~a 114 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---YPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 6778999999999999999999999988775531100000000 01566777888888884 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+.... ..++++..+|.-...+ ...++.+..|+++++++|+...+|..++...
T Consensus 115 l~~~p----------------------~~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 115 LKIDK----------------------NNVKALYKLGVANMYF------GFLEEAKENLYKAASLNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHST----------------------TCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHhCc----------------------ccHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 65311 0123344445444433 2357888999999999999999999988776
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
..+
T Consensus 167 ~~~ 169 (198)
T 2fbn_A 167 NKL 169 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 206
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.02 E-value=6.2 Score=38.23 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000194 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1880)
Q Consensus 1571 ~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~ 1650 (1880)
.+...+....+.|+++.|...+.++....|... ..+.+.+..+...+..|+ ..+|+..++..+.....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~~~~~~p~-- 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV-------YTPNALYWLGESYYATRN---FQLAEAQFRDLVSRYPT-- 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-------ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHCCC--
Confidence 466788889999999999999999887655310 113677888889999995 68999999987764211
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000194 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1880)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1880)
......++..+|...... ...++....|+.+++.+|+...++...+
T Consensus 72 -----------------~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 72 -----------------HDKAAGGLLKLGLSQYGE------GKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp -----------------STTHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred -----------------CcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 112345566666665554 3468899999999999998876655444
No 207
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=89.97 E-value=3.4 Score=47.51 Aligned_cols=167 Identities=11% Similarity=-0.009 Sum_probs=113.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+.+.++..+..+...|+++.|...+.+++..+|. .+...+..+.++...|+ ..+|+..++.....-
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~la~~~~~~g~---~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ----------NGEIGLLLAETLIALNR---SEDAEAVLXTIPLQD 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----------CHHHHHHHHHHHHHTTC---HHHHHHHHTTSCGGG
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----------chhHHHHHHHHHHHCCC---HHHHHHHHHhCchhh
Confidence 45678999999999999999999999999887663 47888999999999995 688998887643210
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
.+. ... .+..+.-+.... ..++.+..|+++++.+|+...+|+.+|......
T Consensus 182 -------------------p~~-~~~--~~~~~~~l~~~~------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~- 232 (287)
T 3qou_A 182 -------------------QDT-RYQ--GLVAQIELLXQA------ADTPEIQQLQQQVAENPEDAALATQLALQLHQV- 232 (287)
T ss_dssp -------------------CSH-HHH--HHHHHHHHHHHH------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred -------------------cch-HHH--HHHHHHHHHhhc------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-
Confidence 000 001 111111111110 123467889999999999999999999875531
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1880)
.-...|+..|.+.+...+ .+ .-+.-.++..++-..|...+.....++.+
T Consensus 233 -------------g~~~~A~~~l~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 233 -------------GRNEEALELLFGHLRXDL-----TAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp -------------TCHHHHHHHHHHHHHHCT-----TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------ccHHHHHHHHHHHHhccc-----ccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 134478999999998752 22 13345666777777777666555555443
No 208
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=89.92 E-value=31 Score=39.40 Aligned_cols=168 Identities=14% Similarity=0.186 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHHHHhhhchhhHHHHHHHHHHHHH
Q 000194 170 RFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERA-VEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1880)
Q Consensus 170 R~aA~~~l~~la~~~p~---~l~~~l~~i~~~i~~~l~D~~~~VR~aA-~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~ 245 (1880)
|..-+.++....+.+++ .....++.+++.++.--++..|..|++- ...+..+..-+.+.-....+..+..+++.+.
T Consensus 46 KkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL 125 (321)
T 1w9c_A 46 KRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL 125 (321)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44555555556666555 3456778888888777776767777654 3333334444443334466778888888888
Q ss_pred hhccCC--CChhHHHHHHHHHHHHHHcchhhhH----HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhH----hh--hCh
Q 000194 246 DGLGRN--APVHSIHGSLLAVGELLRNTGEFMM----SRYREVAEIVLRYLEHRDRLVRLSITSLLPRI----AH--FLR 313 (1880)
Q Consensus 246 ~~l~~~--~~~~~~~~al~~l~~ll~~~~~~~~----~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~l----a~--~~~ 313 (1880)
+-+..+ +-+|.|.+-...|.++..+|-+.+. +.+..+++.++-..+|.++.|....+.++-.+ +. ...
T Consensus 126 ~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~ 205 (321)
T 1w9c_A 126 NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAA 205 (321)
T ss_dssp HHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHH
Confidence 877653 2368899988899999886544322 57788899999889999999998876655443 32 112
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCC
Q 000194 314 DRFVTNYLKICMNHILTVLRIPAE 337 (1880)
Q Consensus 314 ~~f~~~yl~~~~~~Ll~~L~~~~~ 337 (1880)
..|.+.|+-.++..++.++.+...
T Consensus 206 ~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 206 QSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCchh
Confidence 356667888888888888876543
No 209
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=89.87 E-value=1.7 Score=42.48 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=63.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++....+.+.|..|+.+++...... +........+..+|..+|+.+.+...++.+... .. ....+..|
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRN------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTC------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45666777788888888777665422 233456667777888888888777766643221 00 11223346
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA 1405 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg 1405 (1880)
.+.|+|++|...|++.+...++. .+....+-.|+..+|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSC---KEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGG---THHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhc
Confidence 77888888888887776543221 233344444554443
No 210
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.87 E-value=5.2 Score=51.25 Aligned_cols=139 Identities=16% Similarity=0.118 Sum_probs=103.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
++...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+...
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG----------HPEAVARLGRVRWTQQR---HAEAAVLLQQASDAA 87 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999887652 46778888999999995 689999999876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
. . .+.++..+|...... ...++....|+++.+.+|+...+|..+|......-
T Consensus 88 p------------------~----~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 88 P------------------E----HPGIALWLGHALEDA------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp T------------------T----CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred C------------------C----CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 1 0 133445555554443 24678899999999999999999999987765420
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~ 1757 (1880)
+ -.-...|+..|-+++..++
T Consensus 140 ~-----------~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 140 D-----------WRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp C-----------CTTHHHHHHHHHHHHHHTC
T ss_pred c-----------cccHHHHHHHHHHHHhcCC
Confidence 0 0123468888888888753
No 211
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=89.76 E-value=2.7 Score=50.62 Aligned_cols=160 Identities=13% Similarity=0.139 Sum_probs=97.8
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh------------hh
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD------------VQ 1358 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~------------~~ 1358 (1880)
.|......|.|.+|+.+.+...................-.|..+|..+|+++.+...+..+-.... ..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 577788889999999888776542211100011234566889999999999998877764332100 11
Q ss_pred hcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-----CCChHHHHhHH
Q 000194 1359 LKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-----PAEPAARLEMA 1430 (1880)
Q Consensus 1359 ~~~~~~e~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-----~~~~~~~~~~~ 1430 (1880)
..+..|..+|+|++|+..|++.+... .++.........+-.|+..+|+++.-..+.+.... ...+.. ....
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHHH
Confidence 22346889999999999999987532 11111122445677788899999876665543221 110211 2223
Q ss_pred HHHHHHHHHcCChhhHHHHHh
Q 000194 1431 PMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1431 ~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
...+.+.+.+|+++.-.++..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHH
Confidence 345567778888877665544
No 212
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=89.46 E-value=2.1 Score=41.80 Aligned_cols=105 Identities=12% Similarity=-0.028 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|+..+....+.|+++.|...+.++...+|. .+...+..+.++...|+ ..+|+..+++.+.--.
T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P 82 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----------REEAWRSLGLTQAENEK---DGLAIIALNHARMLDP 82 (121)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 3456889999999999999999999999887663 46778888889888885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1880)
. ...-...++.++...|+| ++.+..|+++++.+|++.+
T Consensus 83 ~---------------~~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 83 K---------------DIAVHAALAVSHTNEHNA-------------NAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp T---------------CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHC-------
T ss_pred C---------------CHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCcCCCC
Confidence 0 011123466777777765 5678899999999887643
No 213
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.46 E-value=2.9 Score=47.19 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=74.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccc--cCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---------hh--
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSN--RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---------LD-- 1356 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~--~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---------~~-- 1356 (1880)
.++.+....+.|..|+.+++......... ...+........|..+|..+|+.+.+...+..+... ..
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 44555566666777776666544321000 001112345667888999999999888777643221 10
Q ss_pred --hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1357 --VQLKESWYEKLQRWDDALKAYTNKASQA-----SNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1357 --~~~~~~~~e~lg~W~~Al~~y~~~~~~~-----~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
....+..|...|+|++|+.+|++.+... ++..........+-+|+..+|+|+.-....+
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1122345788899999999998877531 1122223455677788888899876655443
No 214
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.00 E-value=2.2 Score=44.11 Aligned_cols=110 Identities=14% Similarity=0.002 Sum_probs=68.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++....+.+.|..|+.+++..+... ++.....-.+..+|..+|+.+.+.-.++.+... .. ....+..|
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIA------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45667777788888888777665432 334566677888888888888877766643221 10 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
.++|+|++|+.+|++.+...++... .-...++.+|...+++
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~~ 130 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS-DAMKRGLETTKRKIEE 130 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHHHHHH
Confidence 7888888888888887765443321 1134556666555554
No 215
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.98 E-value=6.3 Score=45.32 Aligned_cols=190 Identities=11% Similarity=0.059 Sum_probs=111.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHh
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~-g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
....|...+.+.++.|+++.|...+.++..+.+.... . ..........+.++..+ |+ ..+|+..+++.+.-.
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~--~~~a~~~~~lg~~~~~~lg~---~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--F--RRGANFKFELGEILENDLHD---YAKAIDCYELAGEWY 148 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--H--HHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--H--HHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHH
Confidence 3678889999999999999999998887765432110 0 00123344556666665 74 688999998866532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH-------HHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK-------AWHSWA 1719 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k-------~w~~wA 1719 (1880)
.. .......+.++..+|.-...+ ...++.+..|+++++.+|+... +|...|
T Consensus 149 ~~----------------~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 149 AQ----------------DQSVALSNKCFIKCADLKALD------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HH----------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred Hh----------------CCChHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 21 112234577888888888765 3589999999999999886543 344444
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChh
Q 000194 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNIN 1799 (1880)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~ 1799 (1880)
..... . .-...|+..|-+++.+.+.... ......+..+.. .++.++..+..+++...-..+...
T Consensus 207 ~~~~~-------~-------g~~~~A~~~~~~al~l~p~~~~-~~~~~~l~~l~~-~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 207 LCQLA-------A-------TDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLID-AVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHH-------T-------TCHHHHHHHHHGGGCC----------HHHHHHHHH-HHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHH-------c-------CCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHH-HHHcCCHHHHHHHHHHhccCCccH
Confidence 33221 1 1345789999998887532110 011111222333 345555555556665543333444
Q ss_pred hHH
Q 000194 1800 TWL 1802 (1880)
Q Consensus 1800 ~wl 1802 (1880)
.|.
T Consensus 271 ~~~ 273 (292)
T 1qqe_A 271 KWK 273 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 216
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.86 E-value=12 Score=41.90 Aligned_cols=149 Identities=13% Similarity=0.008 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhcCC--cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCC
Q 000194 1551 VWQALLAVRALVLPP--TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGE 1628 (1880)
Q Consensus 1551 ~w~~iL~~R~~vl~~--~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~ 1628 (1880)
..+.-+....-+..+ ......|...+.+....|+++.|...+.++..........+. ...+.+....+.+++..|+
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH--PAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHHHhcc
Confidence 344444444444322 245788999999999999999999998887754210000000 0124556677888888885
Q ss_pred cchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh-
Q 000194 1629 DLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC- 1707 (1880)
Q Consensus 1629 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~- 1707 (1880)
..+|+..+++.+...... ...+....+.++..+|...... ...++....|+++++.
T Consensus 101 ---~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 101 ---YKEAEPLCKRALEIREKV--------------LGKFHPDVAKQLNNLALLCQNQ------GKAEEVEYYYRRALEIY 157 (283)
T ss_dssp ---HHHHHHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHH--------------cCCCChHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHH
Confidence 688999998876543210 0011234567777777776654 3578899999999888
Q ss_pred -------cccchHHHHHHHHHHHH
Q 000194 1708 -------ATKWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1708 -------~~~~~k~w~~wA~~n~~ 1724 (1880)
.+....+|..+|..+..
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHH
Confidence 66677788888877654
No 217
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.76 E-value=2.3 Score=41.51 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=54.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.+|....+.|.|..|+.+++...... ++.......+..+|..+|+.+.+.-.++.+... .+ .-..+..|
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRA------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45777778888888888887665432 233456666777777777777766655533211 00 11223346
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000194 1365 EKLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~ 1383 (1880)
.++|+|++|+..|++.+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6777777777777776654
No 218
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=88.73 E-value=15 Score=39.91 Aligned_cols=191 Identities=10% Similarity=-0.016 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|...+....+.|+++.|...+.++....|... ..+...+..+...+..|+ ..+|+..+++++.....
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-------YSQQVQLDLIYAYYKNAD---LPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHCcC
Confidence 45678888999999999999999999887655310 124677888899999995 68999999998864321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhh-----hHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH--
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGS-----WKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF-- 1721 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~-----w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~-- 1721 (1880)
.+.. ..-.-.++.++..+|. |.............++.+..|+.+++.+|+...+|......
T Consensus 74 ~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 74 HPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp CTTH------------HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred CCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 1000 0001224444444331 10000000112457889999999999999988776533221
Q ss_pred -HHH-------HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000194 1722 -NTA-------VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1880)
Q Consensus 1722 -n~~-------~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1880)
... +...+.. ..-...|+..|-+.+...+ +.....+...++-..++..|...+..+.++.
T Consensus 142 ~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTE-------RGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------cCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 111 0111111 1123578888888887642 1122335677888888888887766555543
No 219
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=88.72 E-value=9.6 Score=41.91 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=70.2
Q ss_pred HhhcccCCCh--HHHHHHHHHHHHHhhhCCCCchhHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhc
Q 000194 116 RTVFEVKRDR--EILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVH 191 (1880)
Q Consensus 116 ~~~l~~~~d~--~v~~~aa~~l~~L~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~-l~~~ 191 (1880)
..++. ++|. ++...|++++..|+..........++ ..++.+++.|.. .+...+..|+.+|+-|+.+.+.. ..-.
T Consensus 14 V~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~~I~ 91 (233)
T 3tt9_A 14 VSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKLEVA 91 (233)
T ss_dssp HHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34443 4455 78888889998888642111222222 257777888865 45567888899999999764431 1111
Q ss_pred hHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHH
Q 000194 192 VAEFVDAIWVALR-DPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 192 l~~i~~~i~~~l~-D~~~~VR~aA~~al~~~~~ 223 (1880)
=..-+|.++..|+ .++..+|+.|..||..+..
T Consensus 92 ~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 92 ELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 1356788888887 4789999999988887753
No 220
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=88.71 E-value=37 Score=38.83 Aligned_cols=191 Identities=15% Similarity=0.172 Sum_probs=109.3
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCCc--hhHHHHHHHHHHhhh-cCCCcchhHHHHHHHHHHHHhhcC--c
Q 000194 113 NYMRTVFEVKRDREILVLASKVLGHLARA-GGAMT--ADEVEFQVKMALDWL-RGDRVEYRRFAAVLILKEMAENAS--T 186 (1880)
Q Consensus 113 ~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~~--~~~v~~~~~~~~~~l-~~~~~~~~R~aA~~~l~~la~~~p--~ 186 (1880)
..|...++ .-|.+.++.++.++..+... .|+.. .+++... +.++.+| .+.....--.-+=.+|++.+.+-+ .
T Consensus 81 ~~Li~~l~-~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 81 STLVADLQ-LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp HHHHHTGG-GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHhcc-cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence 34455554 45789999999999998875 23322 2344431 2333333 222222122222245566554411 1
Q ss_pred -cch-hchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000194 187 -VFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAV 264 (1880)
Q Consensus 187 -~l~-~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l 264 (1880)
.++ +++-.+ +.-+..|+-.|-..|...++.++.--..--...-...|..++.....-+.++ ....+.-|+..|
T Consensus 159 ~iL~~~~f~~f----F~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKLL 233 (341)
T 1upk_A 159 IILWSEQFYDF----FRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLL 233 (341)
T ss_dssp HHHHSGGGGHH----HHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHH
T ss_pred HHhccHHHHHH----HHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHHH
Confidence 222 233333 3566678888844444444444321000001122233555666655545555 488999999999
Q ss_pred HHHHHc--chhhhHHHHHH--HHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000194 265 GELLRN--TGEFMMSRYRE--VAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1880)
Q Consensus 265 ~~ll~~--~~~~~~~~~~~--i~~~ll~~~~~~~~~Vr~~~~~~i~~la~ 310 (1880)
|+++-. ....|..|+.+ -+..++.++++++..||-.+.++....++
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 999883 44567777664 45577788899999999999999987665
No 221
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=87.97 E-value=16 Score=43.33 Aligned_cols=248 Identities=13% Similarity=0.121 Sum_probs=125.6
Q ss_pred hChHHHHHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHH
Q 000194 58 LGGEAFSRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVL 135 (1880)
Q Consensus 58 ~~~~~~~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l 135 (1880)
..+....+|++. +..++.++++|+|+++|..--..+-.+.+...+ ..+.+++- .+.+-+.+-......-+..--+.+
T Consensus 117 f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~-~R~~Irk~innif~~fiye~e~~~GIaeLLeil 195 (403)
T 3fga_B 117 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 195 (403)
T ss_dssp CCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred cChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 334444555544 566678899999999998544433333222111 11223322 233332221121222233456677
Q ss_pred HHHhhh-CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHH
Q 000194 136 GHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1880)
Q Consensus 136 ~~L~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA 214 (1880)
|.+... .-.+..++..+..+.+++......-......-..++.+..+..|+...+.+..++ ..|..- ++.-.|
T Consensus 196 gsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~t-ns~Kev---- 269 (403)
T 3fga_B 196 GSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKT-HSPKEV---- 269 (403)
T ss_dssp HHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HTCCSS-CHHHHH----
T ss_pred HHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHH-HhCCCC-CcHHHH----
Confidence 777664 1234456766666666665543333333333334445555666666554444443 223321 111111
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHH----HHHHH-
Q 000194 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAE----IVLRY- 289 (1880)
Q Consensus 215 ~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~----~ll~~- 289 (1880)
.-|+.+.+++..-++.........++..+..++.++. -.+...|+...+.= .--..+.++...+++ .+.+.
T Consensus 270 -lFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~h-fqVAErAL~~wnNe--~i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 270 -MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHhccH--HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1233333333333333445566778888888888875 45666666543110 000112223333333 34332
Q ss_pred hhcchhHHHHHHHHHhHhHhhhChhhH
Q 000194 290 LEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1880)
Q Consensus 290 ~~~~~~~Vr~~~~~~i~~la~~~~~~f 316 (1880)
.+|=++.||..+..++..+-+.++.-|
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~d~~lF 372 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEMNQKLF 372 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHccCHHHHHHHHHHHHHHHHhCHHHH
Confidence 345689999999999999888877655
No 222
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=87.85 E-value=8.1 Score=39.53 Aligned_cols=124 Identities=18% Similarity=0.113 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHH
Q 000194 1617 YAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPE 1696 (1880)
Q Consensus 1617 ~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~ 1696 (1880)
+.....+...|+ -.+|+...++-+.-....+.. .........+.+|.-+|.=+..+ ...++
T Consensus 15 ~~~G~~l~~~g~---~eeAi~~Y~kAL~l~p~~~~~----------~a~~~~~~~a~a~~n~g~al~~L------gr~~e 75 (159)
T 2hr2_A 15 LSDAQRQLVAGE---YDEAAANCRRAMEISHTMPPE----------EAFDHAGFDAFCHAGLAEALAGL------RSFDE 75 (159)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHTTSCTT----------SCCCHHHHHHHHHHHHHHHHHHT------TCHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHhhCCCCcch----------hhhhhccchHHHHHHHHHHHHHC------CCHHH
Confidence 445556667774 678999888876533211100 00011123344666666655554 24678
Q ss_pred HHHHHHHHHhh-------cccchHHH----HHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch
Q 000194 1697 IIAAYRNATQC-------ATKWGKAW----HSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS 1765 (1880)
Q Consensus 1697 i~~~y~~a~~~-------~~~~~k~w----~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~ 1765 (1880)
.+..|.+|+++ +|++.++| +..|.....+ .-...|+.+|-+++.+.+...|-..-
T Consensus 76 Al~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l--------------gr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 76 ALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL--------------GRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred HHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC--------------CCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 88889999998 99999999 8887665432 23348999999999998766665555
Q ss_pred HHhHHHHH
Q 000194 1766 LQDILRLL 1773 (1880)
Q Consensus 1766 ~q~~~RlL 1773 (1880)
++.+-+.+
T Consensus 142 ~~~~~~~~ 149 (159)
T 2hr2_A 142 KERMMEVA 149 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 223
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=87.85 E-value=14 Score=40.30 Aligned_cols=117 Identities=18% Similarity=0.129 Sum_probs=73.4
Q ss_pred ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCC
Q 000194 1612 PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDD 1691 (1880)
Q Consensus 1612 ~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~ 1691 (1880)
++...+..+..+...|+ -.+|+..+++++..... ......+++.+|......
T Consensus 3 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~~~~~p~-------------------~~~~~~a~~~lg~~~~~~------ 54 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGN---WRQAITQLEALDNRYPF-------------------GPYSQQVQLDLIYAYYKN------ 54 (225)
T ss_dssp CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-------------------STTHHHHHHHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------------ChHHHHHHHHHHHHHHhc------
Confidence 46778888999999995 68999999998864221 112233444445444433
Q ss_pred CCHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHHH----hhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1692 ESIPEIIAAYRNATQCATKWGK---AWHSWALFNTAVMS----HYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1692 ~~~~~i~~~y~~a~~~~~~~~k---~w~~wA~~n~~~~~----~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
...++.+..|.++++.+|+... +|+.+|....+.-. .+...........-...|+..|-+.+...
T Consensus 55 ~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 55 ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 2357888999999999998875 78888877654210 00000000011235668899999888764
No 224
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=87.66 E-value=38 Score=43.82 Aligned_cols=227 Identities=10% Similarity=0.022 Sum_probs=128.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHH-HHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQAR-STLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~-~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
...+.|+.+++....+|..+.|. ..+.++.+.+|. .+.+.+.++++.+..|+ ...|-..+++.+..
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~----------s~~Lwl~~a~~ee~~~~---~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN----------SAVLAFSLSEQYELNTK---IPEIETTILSCIDR 407 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 35899999999999999998886 888888876552 35677899999999995 46777777776654
Q ss_pred hcCCCc-cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh-cccchHHHHHHHHHHH
Q 000194 1646 LSSCPV-IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC-ATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1646 ~~~~~~-~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~-~~~~~k~w~~wA~~n~ 1723 (1880)
+..... .....+.. ......-..-.+.++..+++..... ...+.+.+.|..|.+. .+...+.|..||..-+
T Consensus 408 l~~~~~~~~~~~p~~-~~~~~~~~~~~~~vWi~y~~~erR~------~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~ 480 (679)
T 4e6h_A 408 IHLDLAALMEDDPTN-ESAINQLKSKLTYVYCVYMNTMKRI------QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred HHHHhhhhhhccCcc-hhhhhhhccchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 310000 00000000 0000000112345566666665543 2467888899999887 5455688888776532
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh-----
Q 000194 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI----- 1798 (1880)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~----- 1798 (1880)
+. .++ ...|-+-|-+++... .+.-.-....+.+....|+...+...++.++...|.
T Consensus 481 ~~------~~d-------~e~Ar~ife~~Lk~~------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 481 HI------SKD-------TKTACKVLELGLKYF------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp TT------TSC-------CHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred Hh------CCC-------HHHHHHHHHHHHHHC------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 21 010 112333333333321 111222334444444557777777788888887772
Q ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhh
Q 000194 1799 NTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQAL 1838 (1880)
Q Consensus 1799 ~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ 1838 (1880)
..|..+ -+.=.+.+.. .-+..+..++.+.+|..-
T Consensus 542 ~lw~~~-~~fE~~~G~~-----~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 542 MIFQKV-IFFESKVGSL-----NSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHH-HHHHHHTCCS-----HHHHHHHHHHHHHSTTCC
T ss_pred HHHHHH-HHHHHHcCCH-----HHHHHHHHHHHHhCCCCc
Confidence 233333 2222233322 236666677778887743
No 225
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=87.65 E-value=6.6 Score=46.29 Aligned_cols=127 Identities=12% Similarity=-0.039 Sum_probs=90.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccc-----cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENV-----RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~-----~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
....|...+....+.|+++.|...+.++..+.|....... .......+.+..+.++...|+ ..+|+..+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA---FSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 4678899999999999999999999999887654210000 000003566777888888885 68999999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+.... ..+++++.+|.-...+ ...++.+..|++|++++|+...+|..+|...
T Consensus 223 l~~~p----------------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 223 LELDS----------------------NNEKGLSRRGEAHLAV------NDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHCT----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHhCC----------------------CcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 65311 0134455566555544 2468899999999999999999999998876
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
..+
T Consensus 275 ~~~ 277 (336)
T 1p5q_A 275 QRI 277 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 226
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=87.60 E-value=4.5 Score=48.62 Aligned_cols=160 Identities=9% Similarity=0.021 Sum_probs=98.8
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch----h--hh------h
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE----L--DV------Q 1358 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~--~~------~ 1358 (1880)
.|......|.|..|+.+.+....-.+.....+......-.|..+|..+|+++.+......+-.. . .. .
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4667778889999998887654322111000111235567889999999999988776643221 1 11 1
Q ss_pred hcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC----CCChHHHHhHHH
Q 000194 1359 LKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT----PAEPAARLEMAP 1431 (1880)
Q Consensus 1359 ~~~~~~e~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~----~~~~~~~~~~~~ 1431 (1880)
..+..|..+|+|++|++.|++.+... .++.........+-.|+..+|+++.-..+.+.... ..++.. .....
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 23446899999999999999987532 12211123345667788899999876665544221 011222 23334
Q ss_pred HHHHHHHHcCChhhHHHHHh
Q 000194 1432 MAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1432 ~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
..+.+.+++|+++.-..+..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 55678888999988776655
No 227
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=87.43 E-value=2.9 Score=40.47 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=67.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-h-----------h
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-D-----------V 1357 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-~-----------~ 1357 (1880)
.+|......+.|..|+.+++...... +........+..+|...|+.+.+.-.+....... . .
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 46777778888888988887765432 2334566778888888888888877666432110 0 1
Q ss_pred hhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000194 1358 QLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1880)
Q Consensus 1358 ~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1880)
...+..|.+.|+|++|...|++.+...+++ +....+-+|...+++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTP----DVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHH
Confidence 122335788888888888888877654332 233444455554443
No 228
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=87.43 E-value=0.44 Score=53.08 Aligned_cols=64 Identities=28% Similarity=0.322 Sum_probs=44.9
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHH
Q 000194 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1880)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1880)
...|+++.||..+...+. .+.|..+++|+++.||..++..++ ...+..
T Consensus 178 ll~D~d~~VR~aaa~~l~--------------~~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~ 225 (244)
T 1lrv_A 178 MTQDPEPEVRRIVASRLR--------------GDDLLELLHDPDWTVRLAAVEHAS------------------LEALRE 225 (244)
T ss_dssp STTCSSHHHHHHHHHHCC--------------GGGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHH
T ss_pred HHcCCCHHHHHHHHHhCC--------------HHHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHH
Confidence 468999999999998763 122445678999999998888754 023444
Q ss_pred HhcCCCChHhHHHHHHHH
Q 000194 649 LEQSSADNKCREESAKLL 666 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L 666 (1880)
| .+ +++.+|+.+...|
T Consensus 226 L-~D-~~~~VR~aa~~~L 241 (244)
T 1lrv_A 226 L-DE-PDPEVRLAIAGRL 241 (244)
T ss_dssp C-CC-CCHHHHHHHHCCC
T ss_pred c-cC-CCHHHHHHHHHHh
Confidence 6 55 6888888776544
No 229
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=87.37 E-value=4.9 Score=51.48 Aligned_cols=151 Identities=10% Similarity=-0.004 Sum_probs=90.7
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccc
Q 000194 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLT 1661 (1880)
Q Consensus 1582 ~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~ 1661 (1880)
+|+++.|...+.++...+| ..+...+..+..++..|+ ..+|+..+++.+....
T Consensus 2 ~g~~~~A~~~~~~al~~~p----------~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p-------------- 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP----------QDFVAWLMLADAELGMGD---TTAGEMAVQRGLALHP-------------- 54 (568)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHTTST--------------
T ss_pred CccHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--------------
Confidence 4677788888877766544 246778888999999995 6899999988654210
Q ss_pred cccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhH
Q 000194 1662 TATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQF 1741 (1880)
Q Consensus 1662 ~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~ 1741 (1880)
..+.++..+|.-.... ...++....|++|++.+|+...+|+.+|....+. + -
T Consensus 55 --------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------g-------~ 106 (568)
T 2vsy_A 55 --------GHPEAVARLGRVRWTQ------QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-------G-------Q 106 (568)
T ss_dssp --------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------T-------C
T ss_pred --------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------C-------C
Confidence 0133455555555443 3468899999999999999999999998775541 1 2
Q ss_pred HHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc---CCcHHHHHHHHhcc
Q 000194 1742 VVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH---GATEEVQIALQKGF 1793 (1880)
Q Consensus 1742 ~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~---g~~~~v~~~~~~~~ 1793 (1880)
...|++.|-+++.+.+ ........+-.++... |+.++..+.+++.+
T Consensus 107 ~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 107 AEAAAAAYTRAHQLLP------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3578889999988752 2244556666677777 77766665555544
No 230
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=87.28 E-value=86 Score=41.16 Aligned_cols=335 Identities=10% Similarity=0.105 Sum_probs=174.3
Q ss_pred HHHHHHHHHhhhcCC-ChhhhhhHHHHHhHhhccc-cCcchhHHHHHHHHHHhhcccCCChH--------HHHHHHHHHH
Q 000194 67 MDQLYDRISGLLESN-DAAENLGALRAIDELIDVA-LGENASKVSKFSNYMRTVFEVKRDRE--------ILVLASKVLG 136 (1880)
Q Consensus 67 ~~~l~~~i~~l~~s~-~~~~r~~~i~ai~~Li~~~-~~~~~~~~~~~~~~L~~~l~~~~d~~--------v~~~aa~~l~ 136 (1880)
++.|..++...+++. ....=.+....|...+..+ .+.......++.+.+...+.|++.-. +...+..-..
T Consensus 230 ~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f~k 309 (799)
T 1vsy_4 230 MTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSYHG 309 (799)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 667777766666531 1111122333333334332 12235567788888888887765432 2223333334
Q ss_pred HHhhh--------C--CCCc----hhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC---ccchhchHHHHHHH
Q 000194 137 HLARA--------G--GAMT----ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS---TVFNVHVAEFVDAI 199 (1880)
Q Consensus 137 ~L~~~--------~--g~~~----~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p---~~l~~~l~~i~~~i 199 (1880)
|+-.- + -.++ ..||+-..+-++-.+.+ ++.....-+..+++.||.-.| +.+ ++.+++.+
T Consensus 310 R~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fS-K~~~~~~~~~~~l~~La~l~P~~~~lV---lP~vL~r~ 385 (799)
T 1vsy_4 310 RVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQN-KNPDIANYYISCFAYLLELDPSNAYLI---YDKILIDL 385 (799)
T ss_dssp HHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTCCTTHHHH---HHHHHHHH
T ss_pred HHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHHhcCCCcccee---hHHHHHHH
Confidence 44321 1 0122 33555555555554443 444555667889999999888 664 45666666
Q ss_pred HHHhcC---CchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc-----
Q 000194 200 WVALRD---PTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT----- 271 (1880)
Q Consensus 200 ~~~l~D---~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~----- 271 (1880)
..+|.. .++.--.+|..++..+...+.... ..+ .++..++..++.|++.++ ..--..++..+..+...-
T Consensus 386 y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~-~yr-~hl~~lL~l~LpgID~ND-~~KT~~tl~fi~~i~s~ipi~d~ 462 (799)
T 1vsy_4 386 YDTLADQFINSRHRIISSLKQFTRVIRFIVMDK-LYR-VHITNVLSMLVSKLDMND-TNLTSNLINGIVSIAAFIPIQDL 462 (799)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST-TGG-GHHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHHTSCBCCC
T ss_pred HHHhccccccchhHHHHHHHHHHHHHHHHhcCc-ccH-HHHHHHHHHHhccCCccc-HHHHHHHHHHHHHHHHhcccccc
Confidence 677655 334444567888877777665332 233 367789999999998875 343445555555554310
Q ss_pred ---hhh--------------------------------------------hHHHHHHHHHHHHHHhhcc-hhHHHHHHHH
Q 000194 272 ---GEF--------------------------------------------MMSRYREVAEIVLRYLEHR-DRLVRLSITS 303 (1880)
Q Consensus 272 ---~~~--------------------------------------------~~~~~~~i~~~ll~~~~~~-~~~Vr~~~~~ 303 (1880)
++. +.......++.++.+++++ +..+-..+..
T Consensus 463 s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~ 542 (799)
T 1vsy_4 463 TGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQ 542 (799)
T ss_dssp CCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHH
T ss_pred CCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 011 1122222344455555532 2222233333
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcch---HHHHHHHHHhhchhhhhhhhhHHHHHHHHhhcCC-----C
Q 000194 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS---GFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----R 375 (1880)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~---a~~alg~la~~v~~~~~p~l~~i~~~l~~~l~~~-----~ 375 (1880)
++..+.....++..+..++.++.++.+.......+.. |..-++.++.+-++.+..++|.++..|+..+.+. .
T Consensus 543 ~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs 622 (799)
T 1vsy_4 543 TTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRS 622 (799)
T ss_dssp HHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4444433333333344555555555443332222222 2222566666656555567788887777555332 1
Q ss_pred C-C--CCc----hHHHHHHHHHHHhCCCchHHHHHHHHHH
Q 000194 376 G-K--PSL----EALACVGNIARAMGPVMEPHVRGLLDIM 408 (1880)
Q Consensus 376 ~-~--~~~----~a~~~l~~la~~~g~~~~~~l~~ll~~l 408 (1880)
. + +.. --+.+++.+....|+.+.+|-+++++.+
T Consensus 623 ~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il 662 (799)
T 1vsy_4 623 TSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFM 662 (799)
T ss_dssp SSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHH
T ss_pred ccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHH
Confidence 1 1 111 2356677777777777888877766543
No 231
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.17 E-value=6.3 Score=51.71 Aligned_cols=157 Identities=10% Similarity=-0.068 Sum_probs=108.3
Q ss_pred HhcCChhHHHHHHHHHh--------cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCc
Q 000194 1580 RKSGRISQARSTLVKLL--------QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651 (1880)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~--------~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~ 1651 (1880)
-..|+++.|...+.++. ..+| ..+...+..+..+...|+ ..+|+..+++.+..-..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p----------~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~--- 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS----------ESVELPLMEVRALLDLGD---VAKATRKLDDLAERVGW--- 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT----------TCSHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHCC---
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc----------cchhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCcc---
Confidence 67889999999998887 3333 246778888999999995 68999999987753211
Q ss_pred cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhc
Q 000194 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTL 1731 (1880)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~ 1731 (1880)
.++++..+|.-.... ...++.+..|++|++++|+...+|+..|....+.
T Consensus 466 -------------------~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~------ 514 (681)
T 2pzi_A 466 -------------------RWRLVWYRAVAELLT------GDYDSATKHFTEVLDTFPGELAPKLALAATAELA------ 514 (681)
T ss_dssp -------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH------
T ss_pred -------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc------
Confidence 123344444444333 2357899999999999999999999999886552
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000194 1732 RGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1880)
Q Consensus 1732 ~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1880)
++.+ . +..|-+++.+. +. .......+=.+++..|..++..+.+++.+..=|-
T Consensus 515 -g~~~-------~-~~~~~~al~~~-----P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 515 -GNTD-------E-HKFYQTVWSTN-----DG-VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp -TCCC-------T-TCHHHHHHHHC-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred -CChH-------H-HHHHHHHHHhC-----Cc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 1111 2 44566666664 22 3445566777788888888877778877765553
No 232
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=87.09 E-value=5 Score=52.55 Aligned_cols=187 Identities=13% Similarity=0.015 Sum_probs=97.3
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHH
Q 000194 157 ALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQ 235 (1880)
Q Consensus 157 ~~~~l~~~~~~~~R~aA~~~l~~la~~~p~-~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~ 235 (1880)
+++-|++ .+...|..|+.+|+.|+++... .+.-+-..|.+.|-..|.|++..||.+|+.||+.+...- +.....+
T Consensus 39 ll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~---g~d~~~~ 114 (684)
T 4gmo_A 39 VLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE---EADFCVH 114 (684)
T ss_dssp HHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS---CHHHHHH
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc---CchHHHH
Confidence 4455554 4567899999999999975332 222233334455566799999999999999999875421 1111111
Q ss_pred -----HHHH---HHHHHHhhccC---C---CC-------hhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhc-
Q 000194 236 -----WYYR---MFEATQDGLGR---N---AP-------VHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEH- 292 (1880)
Q Consensus 236 -----~~~~---~l~~~~~~l~~---~---~~-------~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~- 292 (1880)
.+.. ++......+.. . .. ++.....+.+|..|.+...+.+..-. ...+..++..+.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 1221 22222111111 0 00 12333455566666665544332211 1233444444322
Q ss_pred --chhHHHHHHHHHhHhHhhhChhhHHHHHH----HHHHHHHHHhhcCC-CCcchHHHHHHHH
Q 000194 293 --RDRLVRLSITSLLPRIAHFLRDRFVTNYL----KICMNHILTVLRIP-AERDSGFIALGEM 348 (1880)
Q Consensus 293 --~~~~Vr~~~~~~i~~la~~~~~~f~~~yl----~~~~~~Ll~~L~~~-~~r~~a~~alg~l 348 (1880)
....++.++..+|-.++...++ |.+... ..++..++...+.. ..|..+...+.++
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~~-~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni 256 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNLK-VGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNV 256 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhccCHH-HHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhH
Confidence 3467999999999998876653 333211 12344444433322 2344455555554
No 233
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.98 E-value=17 Score=41.61 Aligned_cols=188 Identities=15% Similarity=0.080 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...+-+-+.+.+..|+++.|..+..++..+.+..... ..........+.++...|+ ..+|+..+++.+.-...
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~ 109 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE----DEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTH 109 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence 4456666778899999999999988877653211000 0013445566777778884 68899999886653211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1880)
..+....+.++..+|.-.... ....++.+.+|++|+++.|+. ..+|..+|.+.
T Consensus 110 ----------------~g~~~~~a~~~~~lg~~~~~~-----lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 110 ----------------RGQFRRGANFKFELGEILEND-----LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 122334577788888877652 035799999999999998754 34555556554
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000194 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1880)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1880)
.+ .+ -...|+..|-+++..........+. .....++-.+++..|+..+....+++.+.--|.
T Consensus 169 ~~-------~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 169 AL-------DG-------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HH-------TT-------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HH-------hC-------CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 32 11 2347899999999875311100111 123566777788889988888888888765554
No 234
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=86.84 E-value=28 Score=43.76 Aligned_cols=176 Identities=9% Similarity=0.075 Sum_probs=112.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
+....|+.++.+..+.|+++.|.....++...+|. .+..+-+.++.++...| +..+|...++..+...
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~---~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---------DPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDA 386 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS---------CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCT
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc---------CchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999998876442 11246777788777777 3577888777654311
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1880)
. .......+.++. .|. . ....++..+.|..+++.+|+....|..+|.+..+
T Consensus 387 ~-----------------~~~~~~~~~a~~---~~~-~------~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-- 437 (530)
T 2ooe_A 387 R-----------------TRHHVYVTAALM---EYY-C------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-- 437 (530)
T ss_dssp T-----------------CCTHHHHHHHHH---HHH-H------TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--
T ss_pred C-----------------CchHHHHHHHHH---HHH-H------cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh--
Confidence 0 001111121111 121 1 1357899999999999999999999999977321
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
. .-...|...|-+++...+. .+.....-..+.+..-..+|+.+.+.....+.....|
T Consensus 438 -----~-------g~~~~Ar~~~~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 438 -----L-------NEDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp -----T-------TCHHHHHHHHHHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred -----C-------CCHhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1 1234678888888875311 1111121223444455667887777766666655554
No 235
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=86.53 E-value=5.6 Score=42.78 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=71.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.+|....+.+.|..|+.+++.... + .....-.+..+|..+|+.+.+...+..+... .. ....+..|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~--------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQD--------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSS--------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcC--------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 456777788888888887766531 1 2456667888888888888887776643221 00 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCc-------------hhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPH-------------IVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~-------------~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
.+.|+|++|+..|++.+...++.. ...+....+-.|+..+|+|+.-....+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 788888888888888776433211 012334455566666666655544443
No 236
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=86.22 E-value=4.2 Score=41.22 Aligned_cols=86 Identities=7% Similarity=-0.095 Sum_probs=41.9
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHHHH
Q 000194 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWYEK 1366 (1880)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~e~ 1366 (1880)
+....+.|.|..|+.+++...... ++....+..|..+|..+|+.+.+.-.++.+... . . .-..+..|.+
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLD------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHcC------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 444455555666665555443221 223444555666666666666655555432210 0 0 0112233556
Q ss_pred hcCHHHHHHHHHHHHhc
Q 000194 1367 LQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~ 1383 (1880)
+|++++|+.+|++.+..
T Consensus 102 ~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 102 XGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666665543
No 237
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=86.20 E-value=5.3 Score=38.00 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=47.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++....+.+.|.+|+.+++...... +........+..+|...|+.+.+...++..... .. .......|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555566667777776666554321 222345556666677777776666655532211 00 11123346
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000194 1365 EKLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~ 1383 (1880)
.+.|+|++|...|++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6667777777777666544
No 238
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=86.06 E-value=3.4 Score=43.22 Aligned_cols=166 Identities=14% Similarity=0.030 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
.+.++..+....+.|+++.|...+.++...+| ..+.+.+..+.++...|+ ..+|+..++..+..-.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----------~~~~a~~~la~~~~~~g~---~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQ----------SRGDVKLAKADCLLETKQ---FELAQELLATIPLEYQ- 71 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH----------TSHHHHHHHHHHHHHTTC---HHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------CcHHHHHHHHHHHHHCCC---HHHHHHHHHHhhhccC-
Confidence 34578889999999999999999988776544 247788889999999995 6789988776432100
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1880)
. .....+.+.+.+ .+. .. . .+.+..|+++++.+|+...+|+.+|......
T Consensus 72 ~---------------~~~~~~~~~~~~-~~~----~~-----~--~~a~~~~~~al~~~P~~~~~~~~la~~~~~~--- 121 (176)
T 2r5s_A 72 D---------------NSYKSLIAKLEL-HQQ----AA-----E--SPELKRLEQELAANPDNFELACELAVQYNQV--- 121 (176)
T ss_dssp C---------------HHHHHHHHHHHH-HHH----HT-----S--CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---
T ss_pred C---------------hHHHHHHHHHHH-Hhh----cc-----c--chHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence 0 000111121111 111 10 1 1347889999999999999999999875541
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1880)
.-...|+..|-+++...+ .+ .......+-.++...|...+....+++.+.
T Consensus 122 -----------g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 122 -----------GRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp -----------TCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 123478889989888742 22 122344556667777887776666665543
No 239
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=85.95 E-value=37 Score=41.00 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=39.3
Q ss_pred CchhHHHHHHhhccc-ccC--CCcchh--hHHHHHhhhccCCChHHHHHHHHHHHHhhhc
Q 000194 478 GSAPVQLALQTLARF-NFK--GHDLLE--FARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1880)
Q Consensus 478 ~~~~~~~Al~~L~~~-~~~--~~~l~~--~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1880)
|+...+.||.=+|+| .+. |..... -.++.+..++.|++++||..|-.|+.+++..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 455788999999998 222 221111 1356678899999999999999888877654
No 240
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=85.91 E-value=6.8 Score=39.89 Aligned_cols=101 Identities=10% Similarity=-0.071 Sum_probs=74.4
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHH
Q 000194 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYF 1750 (1880)
Q Consensus 1671 ~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~ 1750 (1880)
.+..++.+|.-.... ...++.+..|+++++++|+...+|+..|...... .-...|+..|-
T Consensus 35 ~~~~~~~lg~~~~~~------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--------------g~~~~Ai~~~~ 94 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNK------GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--------------EQFQQAADLYA 94 (151)
T ss_dssp HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------ccHHHHHHHHH
Confidence 345566666655543 3578999999999999999999999999876541 12348999999
Q ss_pred HHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1751 HSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1751 ~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
+++.+.+ . .......+=..++..|..++-...+++.+..-|
T Consensus 95 ~al~l~P-----~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 95 VAFALGK-----N-DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHSS-----S-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHhhCC-----C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999863 2 234556777778888998887777777765433
No 241
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=85.85 E-value=38 Score=40.05 Aligned_cols=204 Identities=10% Similarity=0.122 Sum_probs=115.5
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc----
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE---- 674 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~---- 674 (1880)
.++..|+..+..+++.-|...-.+|.++-..... ..+.+|+.+...+...-+......--.+.++++|.++....
T Consensus 129 ~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~-~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLk 207 (403)
T 3fga_B 129 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 207 (403)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCch
Confidence 4566777888889999999998888887654432 24666776666555443331212223467888888886432
Q ss_pred -----------------ccccCchHHHHHHHHHHhccCCC-------------CCCChhHHHHHHHHHHHHHHhcC-Cch
Q 000194 675 -----------------RLIRPYIAPIHKALVARLLEGTG-------------INANNGIISGVLVTVGDLARVGG-FGM 723 (1880)
Q Consensus 675 -----------------~~~~py~~~il~~ll~~l~~~~~-------------~~~~~~v~~~~~~~l~~La~~~g-~~~ 723 (1880)
+.+.-|.+++...+.+.+..+.. +..++.-....+.=++++....+ .++
T Consensus 208 eehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f 287 (403)
T 3fga_B 208 EEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 287 (403)
T ss_dssp HHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHH
Confidence 12234556666666666543210 00011111112223344444443 456
Q ss_pred hhhHHhHHHHHHHHHhcCCchhhHHHHHHHH-----HHHHhhcCcccccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000194 724 RQYISELMPLIVEALLDGAAVTKREVAVSTL-----GQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1880)
Q Consensus 724 ~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~L-----g~l~~~~~~~i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~l 798 (1880)
.+....++..+..++... +..+-+.|+.-. ..++... .-..+|-+++.|.+..++.-+..+|..+..++
T Consensus 288 ~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n-----~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vl 361 (403)
T 3fga_B 288 VKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDN-----AAKILPIMFPSLYRNSKTHWNKTIHGLIYNAL 361 (403)
T ss_dssp HHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTT-----HHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 667777777777777654 345555554332 1122111 11123555555555555555889999999999
Q ss_pred HHHcccCccch
Q 000194 799 GIMGALDPHAH 809 (1880)
Q Consensus 799 g~lgaldp~~~ 809 (1880)
..+.-+||..+
T Consensus 362 k~l~e~d~~lF 372 (403)
T 3fga_B 362 KLFMEMNQKLF 372 (403)
T ss_dssp HHHHTTSCCCC
T ss_pred HHHHHhCHHHH
Confidence 99888887653
No 242
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=85.19 E-value=6.5 Score=42.46 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=83.4
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHH----------------HHHHHhhcCChHHHhHHHHHHhc-
Q 000194 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEA----------------LIHINNQLHQHEAAVGILTYAQK- 1353 (1880)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~----------------L~~iy~~L~~~D~~~Gi~~~~~~- 1353 (1880)
.|....+-|.|..|+.+++......+ +.....-. |..+|..+|+.|.+...++.+-.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNI------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCH------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35566677888888888877654321 11233334 88999999999999888775432
Q ss_pred hh---h-hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh--CHHHHHHHHhhhcCCCChHHHH
Q 000194 1354 EL---D-VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA--RWEELNNLCKEYWTPAEPAARL 1427 (1880)
Q Consensus 1354 ~~---~-~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg--~w~~l~~~~~~~~~~~~~~~~~ 1427 (1880)
.+ . ....+..|.+.|+|++|+.+|++.+...++. .+....+-.++...| +++......+..... .+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 157 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-TKMQ-- 157 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-CHHH--
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-Cchh--
Confidence 11 1 1223446889999999999999988765443 233344444444444 344444333332221 1110
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1428 EMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1428 ~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
........+...+|+++.-..+.+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Confidence 000112234455667766555444
No 243
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=83.77 E-value=5.6 Score=42.44 Aligned_cols=114 Identities=12% Similarity=-0.026 Sum_probs=58.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc-----------HHHHHHHHHHHhhcCChHHHhHHHHHHhch-h--
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP-----------VAVVEALIHINNQLHQHEAAVGILTYAQKE-L-- 1355 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~-----------~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~-- 1355 (1880)
.+|....+.+.|..|+.+.+......+... +... ......+..+|..+|+.+.+.-.+..+... .
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 121 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTE-EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence 457777788889999888776654322110 0000 134445566666666666665544432211 0
Q ss_pred --hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCH
Q 000194 1356 --DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARW 1407 (1880)
Q Consensus 1356 --~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w 1407 (1880)
..-..+..|.++|+|++|+..|++.+...++. .+....+-.|+..+|+.
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---LDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHHHH
Confidence 01122334566666666666666665443322 23334445555555543
No 244
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=83.64 E-value=12 Score=40.94 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=87.4
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCCchhHHH
Q 000194 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1880)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~ 151 (1880)
..+.+|.+++.-.+|+.|+..+....... .. ....++...++..+.=++.+..|.++|.+... .++.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~---~~----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~----~~~~-- 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRF---SL----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL----HLTE-- 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGC---CH----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH----SGGG--
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhC---CH----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH----ChHH--
Confidence 33456777777778888888887664221 11 22334555555444567778777888887653 1111
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
..+.+.+|+.++..+.+|.|.+..+ +..-..+...+++.+-..+.|++.-||.+.+.+|+.+..
T Consensus 125 -~~~~i~~W~~s~~~w~rR~ai~~~l-------~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 125 -LPTIFALFYGAENFWNRRVALNLQL-------MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp -HHHHHHHHTTCSSHHHHHHHHHTTT-------TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHcCCCHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 1345778999888888888866443 222235666777777778999999999999999998653
No 245
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=83.60 E-value=5.7 Score=47.62 Aligned_cols=126 Identities=10% Similarity=0.026 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC----Ccccc--cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPET----SHENV--RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~----~~~~~--~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
...|...+..+.+.|+++.|...+.++..+.+.. ..+.. .....+.+.+..+.++...|+ ..+|+..+++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 299 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD---WQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC---HHHHHHHHHHH
Confidence 5678999999999999999999988877631110 00000 000124566677778888884 67899988876
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+.. . ...++++..+|.-...+ ...++.+..|++|.+++|+...+|..++...
T Consensus 300 l~~-~---------------------p~~~~a~~~lg~~~~~~------g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 300 LEI-D---------------------PSNTKALYRRAQGWQGL------KEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HTT-C---------------------TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHh-C---------------------chhHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 531 1 01245566666666554 3468899999999999999999999888776
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
..+
T Consensus 352 ~~~ 354 (370)
T 1ihg_A 352 QKI 354 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 246
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=83.58 E-value=4.8 Score=40.54 Aligned_cols=57 Identities=18% Similarity=0.029 Sum_probs=27.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILT 1349 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~ 1349 (1880)
.++......+.|..|+.+.+......+.. .++ ......+..+|..+|+.+.+...++
T Consensus 14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555566677777776665543221100 011 1123345555555555555554444
No 247
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=83.23 E-value=8 Score=47.88 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc---ccc--cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSH---ENV--RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~---~~~--~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~ 1642 (1880)
....|...+..+.+.|+++.|.....++..+++.... +.. .......+.+..+.++...|+ ..+|+..+++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 343 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE---YTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 3678899999999999999999999998876553100 000 000003556667778888884 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+.... ..+++++.+|.-...+ ...++.+..|++|++++|++..+|..++...
T Consensus 344 l~~~p----------------------~~~~a~~~~g~a~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 344 LGLDS----------------------ANEKGLYRRGEAQLLM------NEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHST----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HhcCC----------------------ccHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 65311 0134455555555443 2467889999999999999999999888776
Q ss_pred HHH
Q 000194 1723 TAV 1725 (1880)
Q Consensus 1723 ~~~ 1725 (1880)
..+
T Consensus 396 ~~~ 398 (457)
T 1kt0_A 396 KKA 398 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 248
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=83.22 E-value=70 Score=36.57 Aligned_cols=132 Identities=13% Similarity=0.178 Sum_probs=93.3
Q ss_pred cccCCChHHHHHHHHHHHHHhhhCCCCchhHHHHHHHHHHhhhcC--CCcchhHHHHHHHHHHHHhhcCccch----hch
Q 000194 119 FEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG--DRVEYRRFAAVLILKEMAENASTVFN----VHV 192 (1880)
Q Consensus 119 l~~~~d~~v~~~aa~~l~~L~~~~g~~~~~~v~~~~~~~~~~l~~--~~~~~~R~aA~~~l~~la~~~p~~l~----~~l 192 (1880)
.|...|++|....+..+.++-..-....+..++..+.-.++-+.. +.-+..|.+=..+|+++..+|...+. +++
T Consensus 86 vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f 165 (321)
T 1w9c_A 86 VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF 165 (321)
T ss_dssp CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH
Confidence 344568999999998888886543333445555555555555653 34457899999999999999988654 477
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHH----HHHHHHHHHHhhccCC
Q 000194 193 AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQ----WYYRMFEATQDGLGRN 251 (1880)
Q Consensus 193 ~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~----~~~~~l~~~~~~l~~~ 251 (1880)
..+++.|.-|.+++...|-+.+.+.+..++..+++ ......+ +|..++..+..-+.|+
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~-~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ-EEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88899999999999999999999988888877764 2233333 4445555555555554
No 249
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=82.93 E-value=13 Score=43.06 Aligned_cols=183 Identities=7% Similarity=0.025 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...+.+.+.+.+..|+++.|..++.++..+.+..... ..........+.+....|+ ..+|+..+++.+.-...
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL----FHAAKAFEQAGMMLKDLQR---MPEAVQYIEKASVMYVE 108 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---GGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHH
Confidence 5566777888899999999999888876543211000 0012233445566666775 46788888876643221
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1880)
..+....+.++..+|.-... ...++.+.+|++|+++.+.. ..+|..+|.+.
T Consensus 109 ----------------~g~~~~~a~~~~~lg~~~~~-------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 109 ----------------NGTPDTAAMALDRAGKLMEP-------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL 165 (307)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 12234567788888877643 35899999999999988754 34555555553
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
.+ .+ -...|+..|-+++.+.... +... .......+..+++..|+..+....+++.+ ..|
T Consensus 166 ~~-------~g-------~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 166 VR-------QQ-------KFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HH-------TT-------CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HH-------cC-------CHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 32 11 2347888888888764211 1111 12234555566677788888888888887 555
No 250
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=82.86 E-value=19 Score=40.95 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~-- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALEL-- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTS--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh--
Confidence 4678899999999999999999999998877652 46778888899989995 68899988875431
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc-----hHHHHHHHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW-----GKAWHSWALF 1721 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~-----~k~w~~wA~~ 1721 (1880)
.+ -.++++..+|.-...+ ...++.+..|+++.+++|+. ..+|......
T Consensus 68 -~p-------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 120 (281)
T 2c2l_A 68 -DG-------------------QSVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (281)
T ss_dssp -CT-------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred -CC-------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Confidence 10 0123445555544443 24678899999999999865 3455555433
No 251
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=82.83 E-value=18 Score=38.14 Aligned_cols=127 Identities=7% Similarity=-0.026 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhcCChHHHhHHHHHHhc------hh-----hhhhcHHHHHHhcCHHHHHHHHHHHHhc---cC-CCch
Q 000194 1325 VAVVEALIHINNQLHQHEAAVGILTYAQK------EL-----DVQLKESWYEKLQRWDDALKAYTNKASQ---AS-NPHI 1389 (1880)
Q Consensus 1325 ~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~------~~-----~~~~~~~~~e~lg~W~~Al~~y~~~~~~---~~-~~~~ 1389 (1880)
......+..+|...|+++.+.-.++.+.. .. .....+..|...|+|++|+..|++.+.. .+ ++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34556677777777777777665553322 00 0112233578889999999999887653 22 1111
Q ss_pred hHHhHhhHhHHHHHhhCHHHHHHHHhhhc----CCCChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1390 VLEATLGRMRCLAALARWEELNNLCKEYW----TPAEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1390 ~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~----~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
.......+-.++..+|+|+.-....+... ...+...........+.+.+.+|+|+.-..+..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 12334556677888889876655544321 011122222223355678888888887666544
No 252
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=82.78 E-value=44 Score=40.25 Aligned_cols=237 Identities=13% Similarity=0.112 Sum_probs=121.3
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCCch
Q 000194 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMTA 147 (1880)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~-~g~~~~ 147 (1880)
+..++.++++|+|+++|..--..+-.+.+...+ ..+.+++- .+.+.+.+-......-+...-+.+|.+... .-.+..
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTT-THHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 556677888999999887544444444332212 22233332 232222221122223334556677777653 112445
Q ss_pred hHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Q 000194 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1880)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1880)
++..+....+++......-......=..++.++.+..|+...+.+..++ ..|..- ++.-.| --|+.+.+++..
T Consensus 242 ehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~t-ns~Kev-----lFL~eleeile~ 314 (449)
T 2npp_B 242 EHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKT-HSPKEV-----MFLNELEEILDV 314 (449)
T ss_dssp HHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HTCCSS-CHHHHH-----HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHH-HhCCCC-CchHHH-----HHHHHHHHHHHh
Confidence 6666666666665543332222222234444555666665544443333 223221 111111 124444444433
Q ss_pred hchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-----hcchhHHHHHHH
Q 000194 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-----EHRDRLVRLSIT 302 (1880)
Q Consensus 228 r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-----~~~~~~Vr~~~~ 302 (1880)
-++.........++..+..++.++. -.+...|+...+.= .--..+..+-..+++.++..+ +|=+..||..+.
T Consensus 315 ~~~~ef~~i~~~lF~~la~ci~S~h-fqVAErAL~~w~N~--~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~ 391 (449)
T 2npp_B 315 IEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIY 391 (449)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHCCH--HHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHH
Confidence 3333445566778888888888875 45666666543110 000122223334445444433 455889999999
Q ss_pred HHhHhHhhhChhhHH
Q 000194 303 SLLPRIAHFLRDRFV 317 (1880)
Q Consensus 303 ~~i~~la~~~~~~f~ 317 (1880)
.++..+.+.++.-|-
T Consensus 392 ~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 392 NALKLFMEMNQKLFD 406 (449)
T ss_dssp HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCHHHHH
Confidence 999999988887653
No 253
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=82.60 E-value=1.9 Score=56.69 Aligned_cols=148 Identities=13% Similarity=0.089 Sum_probs=87.9
Q ss_pred HHHHHhcCCCChHhHHHHHHHHHHHHHhCcccccCc-hHHHHHHHHH-HhccCCCCCCChhHHHHHHHHHHHHHHhcCCc
Q 000194 645 LLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY-IAPIHKALVA-RLLEGTGINANNGIISGVLVTVGDLARVGGFG 722 (1880)
Q Consensus 645 ~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py-~~~il~~ll~-~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~ 722 (1880)
++..|+ + .++..|..||.+|+.|++... .-+-. -..++..++. .+.|+ +..|+.+++.+++.|+..+|.+
T Consensus 39 ll~~L~-S-~~~~~r~~A~~al~~l~~~~~-~~~l~~~~~~v~~ll~~lL~D~-----~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 39 VLKDLK-S-PDAKSRTTAAGAIANIVQDAK-CRKLLLREQVVHIVLTETLTDN-----NIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HHHHHS-S-SCCSHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHHHTTTTCS-----CHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHcC-C-CCHHHHHHHHHHHHHHHcCcH-HHHHHHHcCCHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHhhcCch
Confidence 333444 4 578899999999999986321 11111 1234444443 35553 7899999999999999888876
Q ss_pred hhhhH--HhHHHHHHHHHhcC-------------Cch-------hhHHHHHHHHHHHHhhcCccc---ccCCcchHHHHH
Q 000194 723 MRQYI--SELMPLIVEALLDG-------------AAV-------TKREVAVSTLGQVVQSTGYVI---TPYNEYPQLLGL 777 (1880)
Q Consensus 723 ~~~~~--~~l~p~l~~~l~d~-------------~~~-------~~r~~Al~~Lg~l~~~~~~~i---~p~~~~p~ll~~ 777 (1880)
+..++ ..++|.+...+... ... +.-++++..|..++++....+ .-....|.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 65543 23666666665311 000 112356777777777665432 111223444444
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 778 LLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 778 Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
|... +....+++.+++.+|..+.
T Consensus 191 L~~~--~~~~~~v~~~a~~~L~~ls 213 (684)
T 4gmo_A 191 LISA--DIAPQDIYEEAISCLTTLS 213 (684)
T ss_dssp HHHH--CCSCHHHHHHHHHHHHHHH
T ss_pred HHhc--CCCcHHHHHHHHHHHHHHh
Confidence 4332 2235789999999988774
No 254
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=82.32 E-value=5.3 Score=47.14 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=74.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCC---------cHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDAN---------PVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---- 1355 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~---------~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---- 1355 (1880)
.+|....+.+.|..|+.+.+..+...+....... .......|..+|..+|+.+.+.-.++.+-.. .
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 4566777778888888877766543221100000 0245667888888889988888777643221 1
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000194 1356 DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1880)
Q Consensus 1356 ~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1880)
..-..+..|.++|+|++|+.+|++.+...++. .+....+-.|+..+|+++.-
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 11223445788899999999998888654432 34556677788888887644
No 255
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=82.27 E-value=1.1e+02 Score=41.96 Aligned_cols=161 Identities=12% Similarity=0.027 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHHhhh----CCCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHH
Q 000194 124 DREILVLASKVLGHLARA----GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAI 199 (1880)
Q Consensus 124 d~~v~~~aa~~l~~L~~~----~g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i 199 (1880)
++.+.+.|.-++|.|+.. .+.-..+.++...+.+.+.+.. .++..+..++.+|+-+.. |.. ++.+
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~--p~~--------l~~l 476 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQ--PNS--------IKKI 476 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTC--GGG--------HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCC--hhH--------HHHH
Confidence 456777788889988874 1223445666666666665543 345566777777766553 322 2222
Q ss_pred HHHh-------cCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000194 200 WVAL-------RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1880)
Q Consensus 200 ~~~l-------~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1880)
...+ .+...+||.+|..||+.+.. .++. .....+++...+ ...+.++|.+|+.+| +++.+
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~p~---~v~~il~~i~~n---~~e~~EvRiaA~~~L---m~t~P 543 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPR---KVQEIVLPIFLN---VAIKSELRIRSCIVF---FESKP 543 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHH---HHHHHHHHHHHC---TTSCHHHHHHHHHHH---HHTCC
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhh----hchH---HHHHHHHHHhcC---CCCChHHHHHHHHHH---HHHCc
Confidence 2222 12346799999999886532 1111 122222332222 112468888877665 44322
Q ss_pred hhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChh
Q 000194 273 EFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRD 314 (1880)
Q Consensus 273 ~~~~~~~~~i~~~ll~~~-~~~~~~Vr~~~~~~i~~la~~~~~ 314 (1880)
.. .++..+...+ .+++..|+..+...|-.++.....
T Consensus 544 ~~------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 544 SV------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp CH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred CH------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 10 1222233333 457889999999999999876544
No 256
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=81.99 E-value=13 Score=37.99 Aligned_cols=127 Identities=7% Similarity=-0.076 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC----Ccccc--c--CCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPET----SHENV--R--YHGPPQVMYAYLKYQWSLGEDLKRKEAFARL 1639 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~----~~~~~--~--~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L 1639 (1880)
....|...+..+.+.|+++.|.....++....+.. .+.+. . ....+.+.+..+.++...|+ ..+|+..+
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~---~~~A~~~~ 86 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD---LHEAEETS 86 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHH
Confidence 36788999999999999999999988877651100 00000 0 00123566667778888885 67899988
Q ss_pred HHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch-HHHHHH
Q 000194 1640 QTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG-KAWHSW 1718 (1880)
Q Consensus 1640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~-k~w~~w 1718 (1880)
+..+.- .. ..+++++.+|.-...+ ...++.+..|+++++++|+.. .++..+
T Consensus 87 ~~al~~-~p---------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 87 SEVLKR-EE---------------------TNEKALFRRAKARIAA------WKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HHHHHH-ST---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHhc-CC---------------------cchHHHHHHHHHHHHH------hcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 876642 10 1234455555555444 246788999999999999988 556666
Q ss_pred HHHHHHH
Q 000194 1719 ALFNTAV 1725 (1880)
Q Consensus 1719 A~~n~~~ 1725 (1880)
+.....+
T Consensus 139 ~~~~~~~ 145 (162)
T 3rkv_A 139 KIVTERR 145 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 257
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=81.69 E-value=7.5 Score=44.75 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=80.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----------hhhh
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----------DVQL 1359 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----------~~~~ 1359 (1880)
.+|.+....|.+..||..++......+ ..+..+..-.++.||-++|++|.|.-+++..+... -.++
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 567777778889999998877654221 01345677788999999999999999997543221 1334
Q ss_pred cHHHHH-Hhc--CHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1360 KESWYE-KLQ--RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1360 ~~~~~e-~lg--~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
.+.|.. ..| ++++|+..|++..+..++ +.....++.|+.++|+|+......+
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPT----WKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHHHHHHcCCHHHHHHHHH
Confidence 444532 224 899999999987643322 2234556669999999987766654
No 258
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=81.54 E-value=9.6 Score=52.40 Aligned_cols=132 Identities=15% Similarity=0.177 Sum_probs=87.7
Q ss_pred HHHHHHhhhcC----CChhhhhhHHHHHhHhhccccCc----chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000194 70 LYDRISGLLES----NDAAENLGALRAIDELIDVALGE----NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1880)
Q Consensus 70 l~~~i~~l~~s----~~~~~r~~~i~ai~~Li~~~~~~----~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~ 141 (1880)
+.+.+++|+++ ++..-|..+++++..|+...... ....+..+.++|...+. ..|.+-+..+-++||.+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~-~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh-cCChHHHHHHHHHhhccCCh
Confidence 44556677765 34456778999999997642111 23457778888888885 56788888999999988653
Q ss_pred CCCCchhHHHHHHHHHHhhhcC------CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHh--cCCchhHHHH
Q 000194 142 GGAMTADEVEFQVKMALDWLRG------DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL--RDPTLAVRER 213 (1880)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~------~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l--~D~~~~VR~a 213 (1880)
. - ++.+.+++.. +...+.|.+|+.+|+.++..-|.. +.+.++... ++.+++||-+
T Consensus 471 ~------~----l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 N------S----IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp G------G----HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHH
T ss_pred h------H----HHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHHH
Confidence 1 1 4444455532 223457789999999988654443 334455555 4556899999
Q ss_pred HHHHHH
Q 000194 214 AVEALR 219 (1880)
Q Consensus 214 A~~al~ 219 (1880)
|+..|-
T Consensus 534 A~~~Lm 539 (1056)
T 1lsh_A 534 SCIVFF 539 (1056)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998663
No 259
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=81.17 E-value=13 Score=43.04 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=74.2
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-----------hhhc
Q 000194 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-----------VQLK 1360 (1880)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-----------~~~~ 1360 (1880)
+.+-.+.+.|..|+.+.+....-.+..............|..+|.. |+++.+...++.+-.... ....
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 4444555677777777765432211100000112455677888988 999988777664322110 1122
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCC-C--chhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000194 1361 ESWYEKLQRWDDALKAYTNKASQASN-P--HIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~~~~~-~--~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1880)
+..|.++|+|++|+.+|++.+...++ + ........+...|+..+|+++.-....+..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34588999999999999998753211 1 111234567778888999998777666553
No 260
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=81.02 E-value=9.8 Score=35.60 Aligned_cols=87 Identities=14% Similarity=0.021 Sum_probs=43.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++......+.|..|+.+++...... +......-.+..+|..+|+.+.+.-.++..... .. ....+..+
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566666677777777666554321 222344445555555555555555544432110 00 01122235
Q ss_pred HHhcCHHHHHHHHHHHHh
Q 000194 1365 EKLQRWDDALKAYTNKAS 1382 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~ 1382 (1880)
.+.|++++|...|++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555544
No 261
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=80.53 E-value=12 Score=34.71 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCc-chHHhHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD-DSLQDILR 1771 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~-~~~q~~~R 1771 (1880)
..++.+..|.++++.+|....+|...|...... .-...|+..|-+++...+ . ........
T Consensus 21 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--------------~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~ 81 (112)
T 2kck_A 21 NYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--------------ERYEEAVDCYNYVINVIE-----DEYNKDVWAA 81 (112)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHTSC-----CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHhCc-----ccchHHHHHH
Confidence 457888999999999999999999888775531 123478899999988752 2 13556677
Q ss_pred HHHHHHhc-CCcHHHHHHHHhcccCCCh
Q 000194 1772 LLTLWFNH-GATEEVQIALQKGFAHVNI 1798 (1880)
Q Consensus 1772 lLtLwf~~-g~~~~v~~~~~~~~~~ip~ 1798 (1880)
+-.+++.. |...+..+.+++.+..-|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 77788888 8888888888887766654
No 262
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=80.38 E-value=25 Score=38.57 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=74.7
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHH-HHHHHHHhhhCCCCchhHHH
Q 000194 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLA-SKVLGHLARAGGAMTADEVE 151 (1880)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~a-a~~l~~L~~~~g~~~~~~v~ 151 (1880)
.+.+|.+++.-..|..|+..+....... ....+..+..|+. ..++=++.+.. ..++|.+........
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~---~~~~l~~~~~~l~----~~~nWd~~D~~a~~~~g~~~~~~p~~~----- 132 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHI---NETHIPFLEELIV----TKSWWDSVDSIVPTFLGDIFLKHPELI----- 132 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGC---CGGGHHHHHHHHT----SSCCHHHHHHHTTTHHHHHHHHCGGGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc----cCCChHHHHHhhHHHHHHHHHHCHHHH-----
Confidence 3445666654444444444443221111 1112233333333 23455666655 367777766421111
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
.+.+.+|+.++..+.+|.|.+..+. .........+++.+...+.|++..||.|...+|+.+..
T Consensus 133 --~~~l~~W~~s~~~w~rR~ai~~~l~-------~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k 195 (232)
T 3jxy_A 133 --SAYIPKWIASDNIWLQRAAILFQLK-------YKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAK 195 (232)
T ss_dssp --GGTHHHHHHSSCHHHHHHHHHTTTT-------CGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHhcCCchHHHHHHHHHHHH-------HHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 2346689988888888888665432 22234445666777788899999999999999987653
No 263
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=80.38 E-value=5.9 Score=38.43 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~Rl 1772 (1880)
..++.+..|+++++.+|+...+|+..|...... .-...|+..|-+++.+. +. .......+
T Consensus 32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~-----P~-~~~~~~~l 91 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--------------EKDGLAIIALNHARMLD-----PK-DIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC-----TT-CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC-----CC-CHHHHHHH
Confidence 357788999999999999999999999886541 12347899999999985 23 34455666
Q ss_pred HHHHHhcCCcHHHHHHHHhcccC
Q 000194 1773 LTLWFNHGATEEVQIALQKGFAH 1795 (1880)
Q Consensus 1773 LtLwf~~g~~~~v~~~~~~~~~~ 1795 (1880)
-.++...|...+....+++.+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777777766666666665543
No 264
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=79.65 E-value=14 Score=36.75 Aligned_cols=98 Identities=6% Similarity=-0.013 Sum_probs=70.4
Q ss_pred HHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHH
Q 000194 1672 ARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFH 1751 (1880)
Q Consensus 1672 a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~ 1751 (1880)
...++.+|...... ...++.+..|+.+++.+|+...+|+..|..+... .-...|+..|-+
T Consensus 18 ~~~~~~~a~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~ 77 (142)
T 2xcb_A 18 LEQLYALGFNQYQA------GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL--------------GLYEQALQSYSY 77 (142)
T ss_dssp HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH--------------hhHHHHHHHHHH
Confidence 44455566655543 3578899999999999999999999998876541 123479999999
Q ss_pred HHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000194 1752 SIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1880)
Q Consensus 1752 si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1880)
++.+.+ . .......+-.+++..|...+....+++.+..
T Consensus 78 al~~~p-----~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 78 GALMDI-----N-EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHCT-----T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCC-----C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999852 2 2344566677778888887777767666543
No 265
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=79.54 E-value=19 Score=41.04 Aligned_cols=54 Identities=9% Similarity=0.113 Sum_probs=33.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHh---ccCCCchh-HHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1362 SWYEKLQRWDDALKAYTNKAS---QASNPHIV-LEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~---~~~~~~~~-~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
..|...|+|++|+.+|++.+. ..++.... ......+-.|+..+|+|+.-..+.+
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ 220 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 457778888888888887762 22221111 1344566677778888876665554
No 266
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=79.43 E-value=11 Score=39.15 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=44.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHH-HhhcCCh--HHHhHHHHHHhc-hhh----hhhcH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHI-NNQLHQH--EAAVGILTYAQK-ELD----VQLKE 1361 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~i-y~~L~~~--D~~~Gi~~~~~~-~~~----~~~~~ 1361 (1880)
.++.+....+.|..|+.+++...... ++.......+..+ |...|+. +.+...++.... ... ....+
T Consensus 49 ~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 122 (177)
T 2e2e_A 49 LLGEYYLWQNDYSNSLLAYRQALQLR------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 44555556666666666665544321 1223444555555 6666665 555544443211 000 11223
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~ 1383 (1880)
..|.+.|+|++|...|++.+..
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHHhh
Confidence 3456666666666666666554
No 267
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=79.23 E-value=17 Score=37.57 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=77.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKY-QWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~-lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
++...|..++.+....|+++.|...+.++...+|. .+.+.+..+.+ ....|+.. ..+|+..++..+..
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~l~~~~~~~~-~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE----------NAELYAALATVLYYQASQHM-TAQTRAMIDKALAL 110 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS----------CHHHHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHh
Confidence 45788999999999999999999999998876542 36777788888 55667410 16899988887653
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHH
Q 000194 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWH 1716 (1880)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~ 1716 (1880)
... ...++..+|...... ...++....|+++++.+|+....+.
T Consensus 111 ~p~----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 111 DSN----------------------EITALMLLASDAFMQ------ANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CTT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred CCC----------------------cHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhhCCCCccHHH
Confidence 110 122344444444433 2457888999999999997755443
No 268
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=78.28 E-value=6.6 Score=47.04 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=14.2
Q ss_pred HHHHHHHhccchhhhhhhccchh
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEF 1312 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~ 1312 (1880)
.++....+.+.|..|+.+.+...
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl 250 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVL 250 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 44666666677777776655443
No 269
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=78.24 E-value=5.1 Score=37.33 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=29.1
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHh-hCHHHHHHHHh
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAAL-ARWEELNNLCK 1415 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~L-g~w~~l~~~~~ 1415 (1880)
.+.+.|+|++|+.+|++.+...++... .+....+-.|+..+ |+|+.-....+
T Consensus 49 ~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 49 ALYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHHHHTTCSSCSHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 355666677777777666654333001 23445566666677 77665555444
No 270
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=78.06 E-value=15 Score=35.90 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=22.7
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHH
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELN 1411 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~ 1411 (1880)
+.++|+|++|+..|++.+...++. ......+-.|+..+|+|+.-.
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~ 97 (137)
T 3q49_B 53 YLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEAI 97 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHHHhhHHHHH
Confidence 455566666666666555433221 233444555555555554433
No 271
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=77.61 E-value=28 Score=43.41 Aligned_cols=91 Identities=7% Similarity=-0.052 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhcCChHHHhHHHHHHhch---hh---hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHh
Q 000194 1325 VAVVEALIHINNQLHQHEAAVGILTYAQKE---LD---VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRM 1398 (1880)
Q Consensus 1325 ~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---~~---~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m 1398 (1880)
..++..|+..|.+.|+.|.|..+++..... ++ ....-..|-+.|++++|.+.|++-.+..-.|+ ......+|
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd--~~ty~~Li 182 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE--EPELAALL 182 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC--HHHHHHHH
Confidence 567899999999999999999999864421 11 11122348899999999999998765544454 34567899
Q ss_pred HHHHHhhCHHHHHHHHhhh
Q 000194 1399 RCLAALARWEELNNLCKEY 1417 (1880)
Q Consensus 1399 ~cl~~Lg~w~~l~~~~~~~ 1417 (1880)
+++.+.|+++....+.+.+
T Consensus 183 ~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHH
Confidence 9999999998887776643
No 272
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=77.19 E-value=11 Score=43.21 Aligned_cols=117 Identities=11% Similarity=-0.027 Sum_probs=74.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1880)
.++....+-|.+..|+.+++...... ++.....-.|..+|...|++|.+...++..... .+ .-.....+
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 45666677777888887777665432 334566677888888888888888777643211 10 00111124
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
.+.|++++|+..|++.+...++. .+....+-.+|...|+++.-.....
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~---~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPED---AALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhcccCccHHHHHHHHhcCCcc---HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 55667778888888877654432 4556677778888888876655444
No 273
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=76.77 E-value=13 Score=38.52 Aligned_cols=148 Identities=14% Similarity=-0.016 Sum_probs=87.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-hhh---cH-HHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-VQL---KE-SWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-~~~---~~-~~~ 1364 (1880)
.++....+-|.|..|+.+++...... ++.....-.|..+|...|+++.+...++....... ... .. ..+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL------QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 55677778889999998887765432 23456777889999999999999887774322111 000 00 001
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHH-HhHHHHHHHHHHHcCCh
Q 000194 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAAR-LEMAPMAANAAWNMGEW 1443 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~-~~~~~~~a~aaw~l~~W 1443 (1880)
...+...+|+..|++.+...++. .+....+-.|+..+|+++.-....+..... ++... .......+.+...+|++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDN---FELACELAVQYNQVGRDEEALELLWNILKV-NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HhhcccchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccChHHHHHHHHHHHHHhCCC
Confidence 11122345788888887654443 355677788899999998776665543221 11100 01112334566667777
Q ss_pred hhHH
Q 000194 1444 DQMA 1447 (1880)
Q Consensus 1444 d~~~ 1447 (1880)
+.-.
T Consensus 161 ~~A~ 164 (176)
T 2r5s_A 161 NAIA 164 (176)
T ss_dssp CHHH
T ss_pred CcHH
Confidence 6543
No 274
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=76.75 E-value=81 Score=37.21 Aligned_cols=146 Identities=10% Similarity=0.003 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...+..++.+....|++..|...+.++....+...... ..........+......|+ ..+|+..+++.+.-...
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS---IRTIQSLFVIAGNYDDFKH---YDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH---HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch---hhHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHH
Confidence 56677888899999999999999888776432210000 0012334455666777784 67899998886653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh-----hcccchHHHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ-----CATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~-----~~~~~~k~w~~wA~~n~ 1723 (1880)
..+....+.++..+|.-.... ...++.+.+|++|++ .+|....++..+|..+.
T Consensus 215 ----------------~~~~~~~~~~~~~lg~~y~~~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 215 ----------------IQNDRFIAISLLNIANSYDRS------GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 122345667777777666554 346889999999998 56666777777776655
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.. + -...|+..|-+++.+.
T Consensus 273 ~~-------g-------~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 273 KA-------G-------QTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HT-------T-------CHHHHHHHHHHHHHHC
T ss_pred HC-------C-------CHHHHHHHHHHHHHHH
Confidence 31 1 2246888888888875
No 275
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=76.27 E-value=31 Score=36.66 Aligned_cols=123 Identities=8% Similarity=0.027 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~ 1647 (1880)
+...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..++..+....
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH----------LAVAYFQRGMLYYQTEK---YDLAIKDLKEALIQLR 102 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999998877552 36777888888888885 6899999998775432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHH
Q 000194 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAW 1715 (1880)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w 1715 (1880)
..... . ............+.++..+|.-.... ...++....|+++++.+|+.....
T Consensus 103 ~~~~~---~---~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~ 158 (213)
T 1hh8_A 103 GNQLI---D---YKILGLQFKLFACEVLYNIAFMYAKK------EEWKKAEEQLALATSMKSEPRHSK 158 (213)
T ss_dssp TCSEE---E---CGGGTBCCEEEHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCCSGGGGH
T ss_pred CccHH---H---HHHhccccCccchHHHHHHHHHHHHc------cCHHHHHHHHHHHHHcCcccccch
Confidence 11100 0 00000011223456666677666554 346889999999999999765443
No 276
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=75.41 E-value=14 Score=35.57 Aligned_cols=17 Identities=18% Similarity=-0.050 Sum_probs=6.8
Q ss_pred HHHHHhccchhhhhhhc
Q 000194 1292 GALAEKCRAFAKALHYK 1308 (1880)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~ 1308 (1880)
+....+.|.|..|+-++
T Consensus 9 a~~~~~~~~~~~A~~~~ 25 (129)
T 2xev_A 9 AFDALKNGKYDDASQLF 25 (129)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33333444444444333
No 277
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=74.82 E-value=34 Score=41.90 Aligned_cols=154 Identities=8% Similarity=-0.014 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHH---HHHHHH
Q 000194 1547 RNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMY---AYLKYQ 1623 (1880)
Q Consensus 1547 ~~~~~w~~iL~~R~~vl~~~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~---~~ak~l 1623 (1880)
......+.-+..+.-..+.......+..++.+....|+++.|...+.++..+.+..... ...|.... -.+.+.
T Consensus 29 ~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~----~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 29 NSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD----QAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp CCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG----GCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc----ccchHHHHHHHHHHHHH
Confidence 34455555454444444444446777788999999999999999998876542111000 01233322 334555
Q ss_pred HhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHH
Q 000194 1624 WSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRN 1703 (1880)
Q Consensus 1624 w~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~ 1703 (1880)
...|+ -.+|+..+++.+.-.....+ ......+.++..+|.=..... ....++.+..|++
T Consensus 105 ~~~g~---~~~A~~~~~ka~~i~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~----~~~y~~A~~~~~k 163 (472)
T 4g1t_A 105 YHMGR---LSDVQIYVDKVKHVCEKFSS--------------PYRIESPELDCEEGWTRLKCG----GNQNERAKVCFEK 163 (472)
T ss_dssp HHTTC---HHHHHHHHHHHHHHHHHSCC--------------SSCCCCHHHHHHHHHHHHHHC----TTHHHHHHHHHHH
T ss_pred HHcCC---hHHHHHHHHHHHHHhHhccc--------------ccchhhHHHHHHHHHHHHHHc----cccHHHHHHHHHH
Confidence 67784 67899888876542211100 001112334444442222221 2346889999999
Q ss_pred HHhhcccchHHHHHHHHHHHHH
Q 000194 1704 ATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1704 a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
|++++|+...+|..+|.....+
T Consensus 164 al~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 164 ALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999888775543
No 278
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=74.82 E-value=1.4e+02 Score=35.20 Aligned_cols=128 Identities=14% Similarity=0.253 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhh
Q 000194 169 RRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1880)
Q Consensus 169 ~R~aA~~~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~ 247 (1880)
.|...+.=.++|+-+ .|.+ +++|++.|+..-.|++..||.-.++-+...+. +. .++...+++.+..-
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsL----l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~----~~----~el~~~~l~~L~~L 108 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTL----LDNFLDEIIAFQADKSIEVRKFVIGFIEEACK----RD----IELLLKLIANLNML 108 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGG----GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH----HC----GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHH----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHH
Confidence 466666666776554 5654 45777777777789999999988887766543 11 23345566655555
Q ss_pred ccCCCChhHHHHHHHHHHHHH--------Hcch-----hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000194 248 LGRNAPVHSIHGSLLAVGELL--------RNTG-----EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1880)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll--------~~~~-----~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la 309 (1880)
+.+.+ ..+...++.+...+- .+.+ +-....+..+-..++...++.+..||-.++..+..+.
T Consensus 109 L~d~d-~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 109 LRDEN-VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HTCSS-HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HcCCC-HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 55543 455666665544442 2222 2455666667778888888899999988877666543
No 279
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=74.49 E-value=2 Score=52.01 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHH
Q 000194 1287 DIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEK 1366 (1880)
Q Consensus 1287 ~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~ 1366 (1880)
.+..++..|...|.|..|+.|++...... ....+-..|+..|.++|+.+.+.-.++... .......+.-+-.
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~-------~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn-~~a~~~IGd~~~~ 134 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKKA-------RESYVETELIFALAKTNRLAELEEFINGPN-NAHIQQVGDRCYD 134 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTCC---------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------ccchhHHHHHHHHHHhCCHHHHHHHHcCCc-HHHHHHHHHHHHH
Confidence 44566778888999999999887765421 122344579999999999998887665211 1122333344788
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000194 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1880)
.|+|++|..+|.+. + ....+..||.+||+|+.-.+.....- ....++ -...+.-..|+|+.-
T Consensus 135 ~g~yeeA~~~Y~~a----~-------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk-----~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 135 EKMYDAAKLLYNNV----S-------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWK-----EVCFACVDGKEFRLA 196 (449)
T ss_dssp --CTTTHHHHHHHT----T-------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHH-----HHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHh----h-------hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHH-----HHHHHHHHcCcHHHH
Confidence 99999999999853 1 34678999999999998877776541 111111 123577778999988
Q ss_pred HHH
Q 000194 1447 AEY 1449 (1880)
Q Consensus 1447 ~~~ 1449 (1880)
...
T Consensus 197 ~~~ 199 (449)
T 1b89_A 197 QMC 199 (449)
T ss_dssp HHT
T ss_pred HHH
Confidence 653
No 280
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=74.17 E-value=26 Score=35.81 Aligned_cols=123 Identities=8% Similarity=-0.021 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC---ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG---PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~---~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
....|+.......+.|+++.|.....+++.++|....... ... ......-.+..+...|+ ..+|+...+.-+.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a-~~~~~~~a~a~~n~g~al~~Lgr---~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA-FDHAGFDAFCHAGLAEALAGLRS---FDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC-CCHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhh-hhhccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 4678999999999999999999999999988765210000 000 01245556667777784 6889998887665
Q ss_pred HhcCCCccccccccccccccCcchhhHHHHH----HHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHH
Q 000194 1645 ELSSCPVIQSAASTSLTTATSTNVPLIARVY----LKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAW 1715 (1880)
Q Consensus 1645 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~----~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w 1715 (1880)
-++.. .+-.+-.++.+ ..+|.=+..+ ...++.+..|++|++++|+..-+.
T Consensus 86 l~n~~---------------~e~~pd~~~A~~~~~~~rG~aL~~l------gr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 86 YFNRR---------------GELNQDEGKLWISAVYSRALALDGL------GRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHHHH---------------CCTTSTHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred hhhcc---------------ccCCCchHHHHHHHHHhHHHHHHHC------CCHHHHHHHHHHHHhcCCCcHHHH
Confidence 32110 00011234455 8888877766 358999999999999999764333
No 281
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.60 E-value=16 Score=35.99 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=46.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKE 1361 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~ 1361 (1880)
.++....+.+.|..|+-+++...... ++. ......+..+|..+++.+.+.-.++..... . . ....+
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGLD------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHc------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 45666677788888887777655321 222 234445555666666666555554432211 0 0 01122
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~ 1383 (1880)
..|.+.|+|++|..+|++.+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 2355566666666666655543
No 282
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=73.18 E-value=11 Score=46.75 Aligned_cols=118 Identities=12% Similarity=-0.029 Sum_probs=65.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccC-C--------CCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRM-D--------ANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---- 1355 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~-~--------~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---- 1355 (1880)
.++....+.+.|..|+.+.+......+.... . +........|..+|.++++.+.|.-.+..+-.. .
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 352 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK 352 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence 4566667777788888777655432211000 0 000244556777778888888777666543211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000194 1356 DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1880)
Q Consensus 1356 ~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1880)
..-..+..|.++|+|++|+.+|++.+...++. .+....+-.|+..+|+++.-
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---KAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 01123345777888888888888777543322 23445566677777776543
No 283
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=72.38 E-value=59 Score=36.12 Aligned_cols=123 Identities=14% Similarity=0.210 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHh
Q 000194 168 YRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD 246 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~-~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~ 246 (1880)
..|...+.=.++++-+ .|. .+++|++.++....|++..||+-.+.-+...+. . ..+....+++.+..
T Consensus 30 ~~kl~~L~qa~el~~~~dp~----ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~----~----k~~l~~~~l~~L~~ 97 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE----LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK----V----KVELLPHVINVVSM 97 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG----GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH----H----CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHh----HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHH
Confidence 4666666666776554 554 456777777776789999999988877765542 1 12345566666666
Q ss_pred hccCCCChhHHHHHHHHHHHH----HH----cch-----hhhHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 000194 247 GLGRNAPVHSIHGSLLAVGEL----LR----NTG-----EFMMSRYREVAEIVLRYLEHRDRLVRLSITS 303 (1880)
Q Consensus 247 ~l~~~~~~~~~~~al~~l~~l----l~----~~~-----~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~ 303 (1880)
-+.+.+ ..+...++.+...+ ++ +.+ +-....+..+=..++...++.+..||-.++.
T Consensus 98 Ll~d~d-~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iK 166 (257)
T 3gs3_A 98 LLRDNS-AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIK 166 (257)
T ss_dssp HTTCSC-HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHcCCC-HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHH
Confidence 566543 55666666654444 32 111 2344555556667777778888888877664
No 284
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=72.23 E-value=75 Score=38.25 Aligned_cols=203 Identities=11% Similarity=0.133 Sum_probs=112.5
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc----
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE---- 674 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~---- 674 (1880)
.++..|+..++.+++.-|...-.+|.++-.... ...+.+|+.+...+...-+......--.+.++++|.++....
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~-~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLK 240 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 240 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCT-TTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCc
Confidence 567778888888899999999899988765543 235677777766554443321122223467888888875422
Q ss_pred -----------------ccccCchHHHHHHHHHHhccCCC-------------CCCChhHHHHHHHHHHHHHHhcC-Cch
Q 000194 675 -----------------RLIRPYIAPIHKALVARLLEGTG-------------INANNGIISGVLVTVGDLARVGG-FGM 723 (1880)
Q Consensus 675 -----------------~~~~py~~~il~~ll~~l~~~~~-------------~~~~~~v~~~~~~~l~~La~~~g-~~~ 723 (1880)
+.+.-|.+.+...+.+.+..+.. +..++.-....+.-+.++....+ .++
T Consensus 241 eehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef 320 (449)
T 2npp_B 241 EEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 320 (449)
T ss_dssp HHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHH
Confidence 12233455555555555543200 00011111112223334444333 456
Q ss_pred hhhHHhHHHHHHHHHhcCCchhhHHHHHHHHH--HHHhhcCcccccCCcchHHHHHHHHHh----cCCCCHHHHHHHHHH
Q 000194 724 RQYISELMPLIVEALLDGAAVTKREVAVSTLG--QVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREVLKV 797 (1880)
Q Consensus 724 ~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg--~l~~~~~~~i~p~~~~p~ll~~Ll~~L----~~~~~~~vr~~~l~~ 797 (1880)
.+....++..+.+++... +..+-+.|+.... .+... +..+ ...+++.+...| ++.-+..+|..+..+
T Consensus 321 ~~i~~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~l----i~~n--~~~IlPii~p~L~~~s~~HWn~~V~~la~~v 393 (449)
T 2npp_B 321 VKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSL----ISDN--AAKILPIMFPSLYRNSKTHWNKTIHGLIYNA 393 (449)
T ss_dssp HHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHH----HHTT--HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHH----HHhc--hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHH
Confidence 667777777777777754 3445555543322 11100 1111 123556665555 333366899999999
Q ss_pred HHHHcccCccch
Q 000194 798 LGIMGALDPHAH 809 (1880)
Q Consensus 798 lg~lgaldp~~~ 809 (1880)
+..+.-+||..+
T Consensus 394 lk~l~e~d~~lf 405 (449)
T 2npp_B 394 LKLFMEMNQKLF 405 (449)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHHHCHHHH
Confidence 999988888654
No 285
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=71.85 E-value=9.3 Score=43.58 Aligned_cols=88 Identities=11% Similarity=-0.032 Sum_probs=54.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHH
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWY 1364 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~ 1364 (1880)
.+|....+.|.|..|+-+++...... ++.......+..+|..+|+.+.+...++.+... . .....+..|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRN------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45666777778888887776655432 233456667777777777777777666643321 0 011233456
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000194 1365 EKLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~ 1383 (1880)
.++|+|++|+..|++.+..
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776643
No 286
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=70.97 E-value=58 Score=31.98 Aligned_cols=140 Identities=13% Similarity=0.018 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCC
Q 000194 1614 QVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDES 1693 (1880)
Q Consensus 1614 ~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~ 1693 (1880)
.+....+...+..|+ ..+|+..+++.+..... ..+....+.++..+|.-.... ..
T Consensus 10 ~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~l~~~~~~~------g~ 64 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKE----------------FGDKAAERIAYSNLGNAYIFL------GE 64 (164)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHHHHT------TC
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHH----------------hCCchHHHHHHHHHHHHHHHc------CC
Confidence 445667778888885 67899998886653321 122345667777777776654 35
Q ss_pred HHHHHHHHHHHHhhcccc------hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHH
Q 000194 1694 IPEIIAAYRNATQCATKW------GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQ 1767 (1880)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q 1767 (1880)
.++....|+++.++.++. ..+|+.+|..... .+ -...|+..|-+++.+............
T Consensus 65 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 65 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-------LQ-------DYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TT-------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-------Hh-------hHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 788999999998876643 3344444544332 11 223566667666665321111111122
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHhc
Q 000194 1768 DILRLLTLWFNHGATEEVQIALQKG 1792 (1880)
Q Consensus 1768 ~~~RlLtLwf~~g~~~~v~~~~~~~ 1792 (1880)
....+-.+.+..|+..+..+.+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3344455556667766555555444
No 287
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=70.52 E-value=4.9 Score=50.11 Aligned_cols=88 Identities=13% Similarity=0.027 Sum_probs=55.3
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHHHH
Q 000194 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWYEK 1366 (1880)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~e~ 1366 (1880)
|....+-+.|.+|+.+.+...... ++.......|..+|..+|+.+.|...++.+-.. .+ ....+..|.+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334455677788887777665432 333556677788888888888777766644321 10 1123345777
Q ss_pred hcCHHHHHHHHHHHHhccC
Q 000194 1367 LQRWDDALKAYTNKASQAS 1385 (1880)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~ 1385 (1880)
+|+|++|++.|++.++..+
T Consensus 87 ~g~~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP 105 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 8888888888887776543
No 288
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=70.23 E-value=8.9 Score=36.36 Aligned_cols=61 Identities=13% Similarity=-0.017 Sum_probs=41.3
Q ss_pred CcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHHHHhcCHHHHHHHHHHHHhc
Q 000194 1323 NPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWYEKLQRWDDALKAYTNKASQ 1383 (1880)
Q Consensus 1323 ~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~e~lg~W~~Al~~y~~~~~~ 1383 (1880)
+.....-.|..+|...|+.+.+...++.+... .+ ....+..|.+.|+|++|...|++.+..
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556677888888888888888777654321 11 112334578888999999998887653
No 289
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=68.71 E-value=36 Score=42.40 Aligned_cols=154 Identities=8% Similarity=0.006 Sum_probs=96.8
Q ss_pred HHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCCh---------HHHhHHHHHHhch---h---hh
Q 000194 1293 ALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQH---------EAAVGILTYAQKE---L---DV 1357 (1880)
Q Consensus 1293 ~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~---------D~~~Gi~~~~~~~---~---~~ 1357 (1880)
..+-++|....|+..++.-.... . .....++..|+..|..-+.. +.+..++...... + ..
T Consensus 34 d~c~k~G~~~~A~~lf~~M~~~G----v-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 34 DMCSKKGDVLEALRLYDEARRNG----V-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHT----C-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHcC----C-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 45557778888887765432211 1 12345778899888876653 4455555532211 0 11
Q ss_pred hhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-CCChHHHHhHHHHHHHH
Q 000194 1358 QLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-PAEPAARLEMAPMAANA 1436 (1880)
Q Consensus 1358 ~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-~~~~~~~~~~~~~~a~a 1436 (1880)
+.....|-+.|+|++|+..|++-....-.|+ ......+|.++.+.|+++......+.+-. ...++. ..-.....+
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~--~ty~~Li~~ 184 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE--PELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH--HHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHH
Confidence 2222348899999999999987655433444 34567899999999999887776654321 112221 112344678
Q ss_pred HHHcCChhhHHHHHhhcCC
Q 000194 1437 AWNMGEWDQMAEYVSRLDD 1455 (1880)
Q Consensus 1437 aw~l~~Wd~~~~~~~~~~~ 1455 (1880)
.-+.|++|...++++.|..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHH
Confidence 8899999999999888753
No 290
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=66.89 E-value=5.4 Score=49.74 Aligned_cols=111 Identities=10% Similarity=-0.063 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~ 1649 (1880)
..|...+..+.+.|+++.|...+.++...+|. .+.+....+..++.+|+ ..+|+..+++.+.. .
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l-~-- 70 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTEC---YGYALGDATRAIEL-D-- 70 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHS-C--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh-C--
Confidence 34455566778899999999999999887653 36777888899999995 68999998886642 1
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
++ ...--..+|.+|..+|+ .++.++.|++|++.+|+...+|..++..
T Consensus 71 p~------------~~~~~~~lg~~~~~~g~-------------~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 71 KK------------YIKGYYRRAASNMALGK-------------FRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp TT------------CHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred CC------------CHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 00 00011224455544444 5778899999999999999899888765
No 291
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=66.75 E-value=22 Score=31.32 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=54.4
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1566 ~e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
..+...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..+++.+.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~ 71 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----------NAEAWYNLGNAYYKQGD---YDEAIEYYQKALE 71 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHHhh---HHHHHHHHHHHHh
Confidence 345778999999999999999999999998876542 36777888889988885 6889999988765
No 292
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=66.20 E-value=20 Score=32.94 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
++...|..++.+..+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..+++.+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD----------YVGTYYHLGKLYERLDR---TDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh
Confidence 45788999999999999999999999999887663 36678888999999995 6789999888664
No 293
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=66.20 E-value=12 Score=34.62 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=26.1
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHH
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNL 1413 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~ 1413 (1880)
|.+.|+|++|+..|++.+...++. ......+-.|+..+|+|+.-...
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~ 63 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAIDT 63 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHH
Confidence 555666666666666666543332 23344555666666666554433
No 294
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=66.11 E-value=1.3e+02 Score=31.15 Aligned_cols=182 Identities=14% Similarity=0.022 Sum_probs=100.1
Q ss_pred hcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccccccc
Q 000194 1581 KSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSL 1660 (1880)
Q Consensus 1581 k~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~ 1660 (1880)
..|+++.|...+..+.+ ++. ..+.+....+.+.+..|+ ..+|+..+++.+.....
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~---------~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~------------ 58 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPA---------TASGARFMLGYVYAFMDR---FDEARASFQALQQQAQK------------ 58 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STT---------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHT------------
T ss_pred ccccHHHHHHHHHHhcC-ChH---------HHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHH------------
Confidence 56888888884433333 221 235677788888899995 67899999887654332
Q ss_pred ccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc-------hHHHHHHHHHHHHHHHhhhccC
Q 000194 1661 TTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW-------GKAWHSWALFNTAVMSHYTLRG 1733 (1880)
Q Consensus 1661 ~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~-------~k~w~~wA~~n~~~~~~~~~~~ 1733 (1880)
.......+.++..+|.-.... ...++....|.++.++.... ..++...|..... .+
T Consensus 59 ----~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g 121 (203)
T 3gw4_A 59 ----SGDHTAEHRALHQVGMVERMA------GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALH-------FG 121 (203)
T ss_dssp ----TCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-------HT
T ss_pred ----cCCcHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH-------hC
Confidence 123345677777788776654 35788999999998873322 2233334433222 11
Q ss_pred CCCchhhHHHHHHHHHHHHHhhccccCCCcchHHh-HHHHHHHHHhcCCcHHHHHHHHhcc---cCCChhhHHHHHHHHH
Q 000194 1734 LPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQD-ILRLLTLWFNHGATEEVQIALQKGF---AHVNINTWLVVLPQII 1809 (1880)
Q Consensus 1734 ~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~-~~RlLtLwf~~g~~~~v~~~~~~~~---~~ip~~~wl~~ipQLi 1809 (1880)
-...|+..|-+++.+... .+....... ...+-.+.+..|+..+....+++.+ .......|...+-..+
T Consensus 122 -------~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 193 (203)
T 3gw4_A 122 -------DLAGARQEYEKSLVYAQQ-ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRL 193 (203)
T ss_dssp -------CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence 123566666666655321 111111111 2344455666777766555555443 3344444444444444
Q ss_pred Hhc
Q 000194 1810 ARI 1812 (1880)
Q Consensus 1810 aRi 1812 (1880)
+.+
T Consensus 194 ~~~ 196 (203)
T 3gw4_A 194 NGL 196 (203)
T ss_dssp HTT
T ss_pred cch
Confidence 444
No 295
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=65.80 E-value=57 Score=28.44 Aligned_cols=80 Identities=16% Similarity=0.109 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000194 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1880)
Q Consensus 1613 ~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~ 1692 (1880)
+...+..+...+..|+ ..+|+..+++.+.... . ....+..+|...... .
T Consensus 9 ~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~------------------~----~~~~~~~l~~~~~~~------~ 57 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGD---YDEAIEYYQKALELDP------------------N----NAEAWYNLGNAYYKQ------G 57 (91)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT------------------T----CHHHHHHHHHHHHHT------T
T ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCC------------------C----CHHHHHHHHHHHHHH------h
Confidence 4566777888888885 6789999888765311 0 123344555554443 3
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
..++....|+++++.+|+...+|..+|....
T Consensus 58 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 58 DYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999998887654
No 296
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=65.33 E-value=94 Score=35.04 Aligned_cols=141 Identities=12% Similarity=-0.016 Sum_probs=92.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 000194 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQS 1654 (1880)
Q Consensus 1575 ~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~ 1654 (1880)
++....+.|+++.|...+.+++........ . .....+....+.+....|+ -.+|+..+++.+......
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~--~--~~~~~~~~~lg~~y~~~g~---~~~A~~~~~~al~~~~~~----- 188 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGID--V--YQNLYIENAIANIYAENGY---LKKGIDLFEQILKQLEAL----- 188 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSC--T--THHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhccccc--H--HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhc-----
Confidence 566666778999999999998875332110 0 0011234445556667774 688999999877644311
Q ss_pred ccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHHHHHHHh
Q 000194 1655 AASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFNTAVMSH 1728 (1880)
Q Consensus 1655 ~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n~~~~~~ 1728 (1880)
.......+.++.-+|....+. ...++.+.+|.+|+++.++. ..+|+..|......
T Consensus 189 ----------~~~~~~~~~~~~nlg~~y~~~------~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~--- 249 (293)
T 3u3w_A 189 ----------HDNEEFDVKVRYNHAKALYLD------SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL--- 249 (293)
T ss_dssp ----------SCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT---
T ss_pred ----------ccchhHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh---
Confidence 123456788888888887765 45789999999999887654 46677777665431
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
+ +....|++.|-+|+.+.
T Consensus 250 ----g------~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 250 ----E------YEEAEIEDAYKKASFFF 267 (293)
T ss_dssp ----T------CCHHHHHHHHHHHHHHH
T ss_pred ----C------CcHHHHHHHHHHHHHHH
Confidence 1 23447788888887764
No 297
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.05 E-value=26 Score=42.46 Aligned_cols=127 Identities=8% Similarity=-0.025 Sum_probs=75.6
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----------h-h
Q 000194 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----------D-V 1357 (1880)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----------~-~ 1357 (1880)
..|+.+..+-|.|..|+-+.+....-.+..............+-.+|...|+.|.+.-+.+...... . .
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 3456667777778888876654332111000000001123345567777788887776665322100 0 0
Q ss_pred hhcHHHHHHhcCHHHHHHHHHHHHhccC---CCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1358 QLKESWYEKLQRWDDALKAYTNKASQAS---NPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1358 ~~~~~~~e~lg~W~~Al~~y~~~~~~~~---~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
...+..|+..|+|++|+.+|++.+.... +.....+.....++++..+|+|+......+
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT 199 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 1234568999999999999998765322 222235677889999999999987766543
No 298
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=63.30 E-value=1.8e+02 Score=31.96 Aligned_cols=165 Identities=11% Similarity=0.043 Sum_probs=88.3
Q ss_pred cHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh----cCCcchHHHHHHHH
Q 000194 1568 DVETWLKFASLCRK----SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS----LGEDLKRKEAFARL 1639 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk----~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~----~g~~~~~~~Al~~L 1639 (1880)
+...|..++.+... .|+++.|...+.++...+ .+...+..+.+... .|+ ..+|+..+
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~ 101 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------YSNGCHLLGNLYYSGQGVSQN---TNKALQYY 101 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHTSSSCCC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHhCCCCcccC---HHHHHHHH
Confidence 34566667777777 777777777777665431 25555666666666 553 56677776
Q ss_pred HHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000194 1640 QTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1880)
Q Consensus 1640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1880)
++.+.. . .+.++..+|.....-. + .....++.+..|++|.+.. ...+|+.+|
T Consensus 102 ~~a~~~-~-----------------------~~~a~~~lg~~~~~~~-~-~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 102 SKACDL-K-----------------------YAEGCASLGGIYHDGK-V-VTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHT-T-----------------------CHHHHHHHHHHHHHCS-S-SCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHc-C-----------------------CccHHHHHHHHHHcCC-C-cccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 665431 0 1233444555444310 0 0235677777777777765 455666666
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh----cCCcHHHHHHHHhcc
Q 000194 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN----HGATEEVQIALQKGF 1793 (1880)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~----~g~~~~v~~~~~~~~ 1793 (1880)
.....-. + ...-...|+..|-+++..+ . ......+-.+++. .++..+....+++.+
T Consensus 154 ~~~~~~~------~----~~~~~~~A~~~~~~a~~~~-----~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 154 SLYDAGR------G----TPKDLKKALASYDKACDLK-----D---SPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp HHHHHTS------S----SCCCHHHHHHHHHHHHHTT-----C---HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred HHHHcCC------C----CCCCHHHHHHHHHHHHHCC-----C---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 5543200 0 0112346777777776542 1 2333444445555 455544444444444
No 299
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=62.35 E-value=14 Score=34.27 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=36.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhh
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKE 1416 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1880)
.+.+.|+|++|+..|++.+...++. ......+-.|+..+|+|+.-....+.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4667888888888888887654432 34556777788888888766655544
No 300
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=61.95 E-value=51 Score=33.17 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
+...+++...-...++|+..-..+++.++... - ...+.++.|..-++..++.+...|+.+|..++++++..|...
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~-~----~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDF-E----GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS-S----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC-C----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44444444333445678888888888886322 1 124578888888899999999999999999999998655332
Q ss_pred H--HHHHHHHHHHHhc----CCCChHhHHHHHHHHHHHHHhCcc
Q 000194 638 L--RRHLIQLLTYLEQ----SSADNKCREESAKLLGCLIRNCER 675 (1880)
Q Consensus 638 l--~~~l~~~l~~l~~----~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1880)
+ ++++..+..-+.. +..+..+++..+.++..-+...+.
T Consensus 87 ias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 87 VGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 2 3444444444431 114577888888888888877654
No 301
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=61.28 E-value=11 Score=38.44 Aligned_cols=78 Identities=17% Similarity=0.082 Sum_probs=52.8
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCC--chhhHHHHHHHH
Q 000194 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPS--VAPQFVVHAVTG 1748 (1880)
Q Consensus 1671 ~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~--~~~~~~~~ai~~ 1748 (1880)
++.++..+|++..-.. ..+.+++.+..|++|++++|+...+|+.+|..+..+-... |. ........|+++
T Consensus 42 ~G~~l~~l~~~~~g~~---al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~-----P~~~~a~g~~~eA~~~ 113 (158)
T 1zu2_A 42 WGGVLLELSQFHSISD---AKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT-----PDETEAKHNFDLATQF 113 (158)
T ss_dssp HHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhh---hHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC-----cchhhhhccHHHHHHH
Confidence 4556666665531000 0012578999999999999999999999998877542110 11 112356789999
Q ss_pred HHHHHhhc
Q 000194 1749 YFHSIACA 1756 (1880)
Q Consensus 1749 y~~si~~~ 1756 (1880)
|-+++.+.
T Consensus 114 ~~kAl~l~ 121 (158)
T 1zu2_A 114 FQQAVDEQ 121 (158)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999986
No 302
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=61.22 E-value=41 Score=38.00 Aligned_cols=114 Identities=10% Similarity=-0.051 Sum_probs=73.2
Q ss_pred HHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-------hhhcHHHHHHh
Q 000194 1295 AEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-------VQLKESWYEKL 1367 (1880)
Q Consensus 1295 a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-------~~~~~~~~e~l 1367 (1880)
-..-|.|..|.-.++.-.... ++.. ..-.+.-+|.+.++.+.+...++......+ .-..+..++++
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~------p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG------SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT------CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHhcC------CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 334567777776665433211 2122 334556689999999999988874432110 11234568999
Q ss_pred cCHHHHHHHHHHHHhccCC-CchhHHhHhhHhHHHHHhhCHHHHHHHHhh
Q 000194 1368 QRWDDALKAYTNKASQASN-PHIVLEATLGRMRCLAALARWEELNNLCKE 1416 (1880)
Q Consensus 1368 g~W~~Al~~y~~~~~~~~~-~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1880)
|++++|+.+|++.... +. |....+....+-.||.++|+-++-....+.
T Consensus 185 G~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 185 ALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp TCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999988743 32 432345667788899999998776665544
No 303
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=61.00 E-value=17 Score=34.62 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=30.8
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000194 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1880)
|.+.|+|++|+..|++.+...++. .+....+-.|+..+|+++.-....+
T Consensus 37 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 37 FRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777777777776654332 3445556677777777765554443
No 304
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=60.71 E-value=35 Score=44.18 Aligned_cols=114 Identities=8% Similarity=0.092 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~ 1648 (1880)
...|+.++++.|+.|..+.|.+.+.++.+..+. ..+.+..++|.+-|..|+. ...|.+.++..++.+..
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~---------~~~~lyi~~A~lE~~~~~d--~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL---------VTPDIYLENAYIEYHISKD--TKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG---------SCTHHHHHHHHHHHTTTSC--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------CChHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHCCC
Confidence 568999999999999999999999888764111 1357777888888887642 36788888887765431
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc---cchHHHHHHHHH
Q 000194 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT---KWGKAWHSWALF 1721 (1880)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~---~~~k~w~~wA~~ 1721 (1880)
... ....++++.... ...+.+...|..|++..+ +....|..|+.|
T Consensus 503 ------------------~~~----~w~~y~~fe~~~------~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 503 ------------------DGE----YINKYLDFLIYV------NEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp ------------------CHH----HHHHHHHHHHHH------TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred ------------------chH----HHHHHHHHHHhC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 112 233445554443 347889999999999887 567889999877
No 305
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=60.52 E-value=48 Score=33.39 Aligned_cols=101 Identities=12% Similarity=0.002 Sum_probs=71.9
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh------------------cccchHHHHHHHHHHHHHHHhhhcc
Q 000194 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC------------------ATKWGKAWHSWALFNTAVMSHYTLR 1732 (1880)
Q Consensus 1671 ~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~------------------~~~~~k~w~~wA~~n~~~~~~~~~~ 1732 (1880)
.+..+...|.-.... ...++.+..|.+|+++ +|....+|...|..+..+=
T Consensus 10 ~a~~~~~~G~~~~~~------~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~------ 77 (162)
T 3rkv_A 10 SVEALRQKGNELFVQ------KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG------ 77 (162)
T ss_dssp HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC------
Confidence 455566666655443 3468899999999998 6666678888877655421
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1733 GLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1733 ~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
-...|+..|-++|.+. ........++=.+.+..|...+....+++.+..-|
T Consensus 78 --------~~~~A~~~~~~al~~~------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 78 --------DLHEAEETSSEVLKRE------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp --------CHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred --------cHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 2347899999999885 23466778888889999998887777777765444
No 306
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=60.52 E-value=23 Score=36.08 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.++.++.|+.|++++|+...+|..|+....++-.... + ....+.+..||..|-++|.+.
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~--g--~~al~~~~eAi~~le~AL~ld 76 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHS--I--SDAKQMIQEAITKFEEALLID 76 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSC--H--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccch--h--hhhHhHHHHHHHHHHHHHHhC
Confidence 4788999999999999999999999987665432110 0 012246789999999999996
No 307
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=59.66 E-value=50 Score=30.21 Aligned_cols=64 Identities=19% Similarity=0.074 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1568 ~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
+...|...+....+.|+++.|...+.++...+|. .+.+.+..+.+++..|+ ..+|+..+++.+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ----------NPVGYSNKAMALIKLGE---YTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 3678999999999999999999999998877652 46788889999999995 6889999888663
No 308
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=58.98 E-value=1.1e+02 Score=35.82 Aligned_cols=162 Identities=10% Similarity=-0.038 Sum_probs=90.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCC--CCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----h------h
Q 000194 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMD--ANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----D------V 1357 (1880)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~--~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----~------~ 1357 (1880)
.++......|.|..|+.+.+......+..... +........|..+|...|+.|.+...++..-... . .
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 35566666777788887776654322110000 1112334568889999999999988776432110 0 1
Q ss_pred hhcHHHHHHhcCHHHHHHHHHHHHhccCCCch--hHHh--HhhHhHHHHHhhCHHHHHHHHhhhcCCCCh--HHHHhHHH
Q 000194 1358 QLKESWYEKLQRWDDALKAYTNKASQASNPHI--VLEA--TLGRMRCLAALARWEELNNLCKEYWTPAEP--AARLEMAP 1431 (1880)
Q Consensus 1358 ~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~--~~~~--~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~--~~~~~~~~ 1431 (1880)
......+...|++++|...|++.......... .... ..+....+...|+++.-....+........ ........
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 12233578899999999999987643222111 0111 124455677899998877766654322110 00001112
Q ss_pred HHHHHHHHcCChhhHHHHHh
Q 000194 1432 MAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1432 ~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
..+.+....|+++.-..++.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~ 277 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLE 277 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 34567777888877665554
No 309
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=58.95 E-value=18 Score=42.56 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC---------ChHHHHHHHHHHHhcCCcchHHHHHHHH
Q 000194 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG---------PPQVMYAYLKYQWSLGEDLKRKEAFARL 1639 (1880)
Q Consensus 1569 ~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~---------~~~v~~~~ak~lw~~g~~~~~~~Al~~L 1639 (1880)
...|...+..+.+.|++..|.....++..+.+.... ....+ .....+..+.++...|+ ..+|+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~---~~~A~~~~ 253 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--FQLYGKYQDMALAVKNPCHLNIAACLIKLKR---YDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--HTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--hhhcccHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 677889999999999999999999988776442000 00000 00144455556666664 35677777
Q ss_pred HHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000194 1640 QTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1880)
Q Consensus 1640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1880)
+..+.... ..+++++.+|.-...+ ...++....|++|++++|+...+|..++
T Consensus 254 ~~al~~~p----------------------~~~~a~~~lg~a~~~~------g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 254 NIVLTEEE----------------------KNPKALFRRGKAKAEL------GQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHHCT----------------------TCHHHHHHHHHHHHTT------TCHHHHHHHHHHTTC-------------
T ss_pred HHHHHhCC----------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 76553210 0134455555555443 2457777788888888887777777666
Q ss_pred HH
Q 000194 1720 LF 1721 (1880)
Q Consensus 1720 ~~ 1721 (1880)
..
T Consensus 306 ~l 307 (338)
T 2if4_A 306 AL 307 (338)
T ss_dssp --
T ss_pred HH
Confidence 54
No 310
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=58.62 E-value=25 Score=33.33 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
++...|..++.+..+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..+++.+..
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN----------HQALRVFYAMVLYNLGR---YEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------chHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 45788999999999999999999999999887653 47788889999999995 68999999987654
No 311
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=57.90 E-value=1.9e+02 Score=34.07 Aligned_cols=197 Identities=14% Similarity=0.138 Sum_probs=96.3
Q ss_pred hChHHHHHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHH
Q 000194 58 LGGEAFSRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVL 135 (1880)
Q Consensus 58 ~~~~~~~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l 135 (1880)
.++....+|++. +..++.++++|+|+++|..--..+-.+.+...+ ..+.+++- .+.+.+.+-......-+...-+.+
T Consensus 162 f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~nif~~fiye~e~~~GIaeLLeil 240 (392)
T 2jak_A 162 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 240 (392)
T ss_dssp CCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHH
T ss_pred CChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 333434455533 566788899999999998544444444332211 22233333 333333332222233344566677
Q ss_pred HHHhhhC-CCCchhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHH
Q 000194 136 GHLARAG-GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1880)
Q Consensus 136 ~~L~~~~-g~~~~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA 214 (1880)
|.+...- -.+..++..+..+.+++..+...-......=..++.+..+..|+...+.+..++ ..|..-..++. |
T Consensus 241 gsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~tns~Ke-v---- 314 (392)
T 2jak_A 241 GSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKTHSPKE-V---- 314 (392)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HSSCSSCCTTH-H----
T ss_pred HHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHH-HhCCCCCchHH-H----
Confidence 7776641 123456666666666665543222222222223444455556665554444443 33443333332 2
Q ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHH
Q 000194 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLA 263 (1880)
Q Consensus 215 ~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~ 263 (1880)
.-|..+.+++..-++.........++..+..++.++. -.+...|+..
T Consensus 315 -lFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~h-fqVAErAL~~ 361 (392)
T 2jak_A 315 -MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYY 361 (392)
T ss_dssp -HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSS-HHHHHHHHGG
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHH
Confidence 1233333333323333444566677777777777764 4455555443
No 312
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=56.70 E-value=45 Score=45.72 Aligned_cols=152 Identities=11% Similarity=0.014 Sum_probs=94.9
Q ss_pred ccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000194 186 TVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVG 265 (1880)
Q Consensus 186 ~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~al~~l~ 265 (1880)
..+..|++.++...=..++.+++.||+-+......++... +...+.+.+..++..+.+ ..+.+ .-+|+.+|.
T Consensus 392 ~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f---d~~~qqeVl~~Lv~hi~s----g~~~e-Vd~ALdvL~ 463 (1323)
T 3s4w_B 392 LVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF---DTYCQQEVVGALVTHVCS----GTEAE-VDTALDVLL 463 (1323)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHH----CCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHhhhcC----CCcHH-HHHHHHHHH
Confidence 3567888999988888999999999999999888777653 222344444555554443 32233 556888898
Q ss_pred HHHHcchhhhHHHHHHHHHHHHHHhhc-chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHH
Q 000194 266 ELLRNTGEFMMSRYREVAEIVLRYLEH-RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIA 344 (1880)
Q Consensus 266 ~ll~~~~~~~~~~~~~i~~~ll~~~~~-~~~~Vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~r~~a~~a 344 (1880)
.|....++.+.+ +...+..++.++++ ....+|+. ..++..+|...+.......-+++.-.+-.+|.+...+..-...
T Consensus 464 ~L~~~~~~~l~~-~a~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGI 541 (1323)
T 3s4w_B 464 ELIVLNASAMRL-NAAFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGI 541 (1323)
T ss_dssp HHHHHCHHHHHH-THHHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHhcCHHHHhH-HHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhH
Confidence 888766665555 33455666666665 44667766 7777777754432211112255555666778776654433333
Q ss_pred HHH
Q 000194 345 LGE 347 (1880)
Q Consensus 345 lg~ 347 (1880)
||.
T Consensus 542 IGa 544 (1323)
T 3s4w_B 542 IGA 544 (1323)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 313
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=55.90 E-value=55 Score=33.85 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
+...+++...-...++|+..-..+++.++.... ...+.++.|..-++..++.|+..|+.+|..++++++..|...
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~-----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELE-----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 333443333223345778777777777753211 124578888888899999999999999999999987654332
Q ss_pred H--HHHHHHHHHHHhc----CCCChHhHHHHHHHHHHHHHhCcc
Q 000194 638 L--RRHLIQLLTYLEQ----SSADNKCREESAKLLGCLIRNCER 675 (1880)
Q Consensus 638 l--~~~l~~~l~~l~~----~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1880)
+ ++++..++.-+.. ...+..+|+.++.++..-....+.
T Consensus 89 vas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2 3344444443331 113568888888888888877654
No 314
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.73 E-value=58 Score=39.20 Aligned_cols=118 Identities=11% Similarity=0.077 Sum_probs=71.5
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccc
Q 000194 1577 SLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAA 1656 (1880)
Q Consensus 1577 ~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~ 1656 (1880)
.+....|.++.|................ ......+....+++.-..|+ -.+|+..++++......
T Consensus 103 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~~~~~~~~-------- 167 (434)
T 4b4t_Q 103 KFEQVPDSLDDQIFVCEKSIEFAKREKR----VFLKHSLSIKLATLHYQKKQ---YKDSLALINDLLREFKK-------- 167 (434)
T ss_dssp HHCSCCSCHHHHHHHHHHHHHHHHHSSC----CSSHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHTT--------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhCc----cHHHHHHHHHHHHHHHHccC---hHHHHHHHHHHHHHHHh--------
Confidence 3344456777777666554432111100 01124556667788888884 67899999887765432
Q ss_pred ccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1657 STSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1657 ~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
..++...++++..+|+..... ...+.+...|.+|....+..+..+...|.+..
T Consensus 168 --------~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 168 --------LDDKPSLVDVHLLESKVYHKL------RNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp --------SSCSTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred --------cccchhHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 223456778888888877665 35788888898887776554444444444433
No 315
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=55.59 E-value=24 Score=32.01 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=35.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHH-hHhhHhHHHHHhhCHHHHHHHHhh
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLE-ATLGRMRCLAALARWEELNNLCKE 1416 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~-~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1880)
.+.+.|+|++|+..|++.+...++. .. ....+-.|+..+|+|+.-....+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677888999999998887654332 34 556667788888888766555443
No 316
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=54.97 E-value=35 Score=42.24 Aligned_cols=87 Identities=6% Similarity=-0.083 Sum_probs=54.1
Q ss_pred Hhccchhhhhhhccchhcccccc--cCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc---------hhh----hhhc
Q 000194 1296 EKCRAFAKALHYKEMEFEGARSN--RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK---------ELD----VQLK 1360 (1880)
Q Consensus 1296 ~~c~a~a~AL~y~E~~~~~~~~~--~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~---------~~~----~~~~ 1360 (1880)
..-|.|..|+-+.|......... ...+........|..+|..+|+.|.|.-+.+.+-. +++ ....
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34455666665555443221100 01122345677899999999999999887764321 111 1223
Q ss_pred HHHHHHhcCHHHHHHHHHHHHh
Q 000194 1361 ESWYEKLQRWDDALKAYTNKAS 1382 (1880)
Q Consensus 1361 ~~~~e~lg~W~~Al~~y~~~~~ 1382 (1880)
+..|-..|+|++|...|++.+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4568899999999999999875
No 317
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=54.72 E-value=2.6e+02 Score=31.15 Aligned_cols=173 Identities=10% Similarity=-0.047 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChH------HHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQ------VMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~------v~~~~ak~lw~~g~~~~~~~Al~~L~~~~ 1643 (1880)
..+.+-+....+.|+++.|...+.++....+. .|. +....+.+...+| +..+|+..+++.+
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~----------~~~~~~~~~~~~~l~~~~~~~~---~~~~Ai~~~~~al 142 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY----------HPEFQQFLQWQYYVAAYVLKKV---DYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCC----------CHHHHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccC----------ChHHHHHHHHHHHHHHHHHccc---CHHHHHHHHHHHH
Confidence 34445567778899999999999988764321 122 1112333333444 3688999999877
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc-------cchHHHH
Q 000194 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT-------KWGKAWH 1716 (1880)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~-------~~~k~w~ 1716 (1880)
..... ..+....+.++..+|.-.... ...++.+.+|++|.+... ....+|+
T Consensus 143 ~~~~~----------------~~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 143 NQQLT----------------GIDVYQNLYIENAIANIYAEN------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HTCCC----------------CSCTTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHhcc----------------cccHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 52111 112234566677777666554 357889999999985432 2334566
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCc-HHHHHHHHhc
Q 000194 1717 SWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGAT-EEVQIALQKG 1792 (1880)
Q Consensus 1717 ~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~-~~v~~~~~~~ 1792 (1880)
..|.++.+. + +| ..|+..|-+++.+.... +..+. -.....+=.+++..|.. ++..+.+++.
T Consensus 201 nlg~~y~~~-------~------~y-~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 201 NHAKALYLD-------S------RY-EESLYQVNKAIEISCRI-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHT-------T------CH-HHHHHHHHHHHHHHHHT-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-------h------HH-HHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 666555431 1 22 47788888887765321 11222 23344555566777744 5555444444
No 318
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=54.26 E-value=64 Score=30.06 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=55.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~ 1644 (1880)
++...|..++.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..+++.+.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT----------YSVAWKWLGKTLQGQGD---RAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 55789999999999999999999999998887652 36677888999999995 6789999888664
No 319
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=54.04 E-value=84 Score=34.01 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
++..+++...-...++|+..-..+.+.++.... ...+.++.|..-++..++.|+..|+.+|..++++++..+...
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~-----~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~e 80 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDV-----TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEE 80 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCc-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 333444333333346788887788887763221 124678888888899999999999999999999986544222
Q ss_pred H--HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc
Q 000194 638 L--RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 638 l--~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
+ +.++..+..-+... .+..+++.++.++..-+...+
T Consensus 81 va~~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 81 VFTKENCEMFSSFLEST-PHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HSSHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHhc
Confidence 1 22333333333333 567788888877777776544
No 320
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=52.96 E-value=55 Score=29.39 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCc-chhhHHHHHHHHhhhHhhcCCCCCCCCHH
Q 000194 1617 YAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATST-NVPLIARVYLKLGSWKRALPPGLDDESIP 1695 (1880)
Q Consensus 1617 ~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~a~~~~~lg~w~~~~~~~~~~~~~~ 1695 (1880)
+..+..+...|+ ..+|+..+++.+...... .. -...+|.+|...|+ .+
T Consensus 4 ~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~---------------~~~~~~~lg~~~~~~~~-------------~~ 52 (99)
T 2kc7_A 4 LKTIKELINQGD---IENALQALEEFLQTEPVG---------------KDEAYYLMGNAYRKLGD-------------WQ 52 (99)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHCSST---------------HHHHHHHHHHHHHHHTC-------------HH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHHcCC-------------HH
Confidence 456677777884 678999999876531100 00 11224455544444 47
Q ss_pred HHHHHHHHHHhhcccchHHHHH
Q 000194 1696 EIIAAYRNATQCATKWGKAWHS 1717 (1880)
Q Consensus 1696 ~i~~~y~~a~~~~~~~~k~w~~ 1717 (1880)
+.+..|+++++++|+...+|..
T Consensus 53 ~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 53 KALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHH
Confidence 7889999999999999988843
No 321
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=51.99 E-value=2.7e+02 Score=30.45 Aligned_cols=240 Identities=10% Similarity=-0.017 Sum_probs=137.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh----cCCcchHHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS----LGEDLKRKEAFARLQTL 1642 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~----~g~~~~~~~Al~~L~~~ 1642 (1880)
.+...|..++.+..+.|+++.|...+.++... +++...+..+.+++. .|+ ..+|+..+++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a 68 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL------------KENSGCFNLGVLYYQGQGVEKN---LKKAASFYAKA 68 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCcCCC---HHHHHHHHHHH
Confidence 35778999999999999999999999988762 246677778888887 774 68899998876
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000194 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1880)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1880)
+..- .+.++..+|.....-. + .....++.+..|++|++.. ...+|+.+|...
T Consensus 69 ~~~~------------------------~~~a~~~lg~~~~~g~-~-~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 120 (273)
T 1ouv_A 69 CDLN------------------------YSNGCHLLGNLYYSGQ-G-VSQNTNKALQYYSKACDLK--YAEGCASLGGIY 120 (273)
T ss_dssp HHTT------------------------CHHHHHHHHHHHHHTS-S-SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHCC------------------------CHHHHHHHHHHHhCCC-C-cccCHHHHHHHHHHHHHcC--CccHHHHHHHHH
Confidence 5320 1334455555544310 0 1246789999999999874 678888888775
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh----cCCcHHHHHHHHhcccCCCh
Q 000194 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN----HGATEEVQIALQKGFAHVNI 1798 (1880)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~----~g~~~~v~~~~~~~~~~ip~ 1798 (1880)
..-. + ...-...|++.|-+++..+ .......+-.++.. .++.++....+++.+..=++
T Consensus 121 ~~~~------~----~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 182 (273)
T 1ouv_A 121 HDGK------V----VTRDFKKAVEYFTKACDLN--------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDS 182 (273)
T ss_dssp HHCS------S----SCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HcCC------C----cccCHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 5310 0 1123457899999998763 13334455555555 56666666666655543233
Q ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCC--cHHHHHHHHHHHHHHhhccc
Q 000194 1799 NTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSI--SNLRRAAAQEVVDKVRQHSG 1869 (1880)
Q Consensus 1799 ~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~~~hPqa~ly~L~~~~kS~--~~~R~~~a~~Il~~~~~~~~ 1869 (1880)
..++. +-.+..+-........+.+ ..+.+.....|....+.|-.+.... .....+.|...+++..+..|
T Consensus 183 ~a~~~-lg~~~~~g~~~~~~~~~A~-~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 183 PGCFN-AGNMYHHGEGATKNFKEAL-ARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHH-HHHHHHHTCSSCCCHHHHH-HHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHH-HHHHHHcCCCCCccHHHHH-HHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 33322 2222222000011222222 3334444445545555555444320 01112335555555555444
No 322
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=51.01 E-value=72 Score=34.68 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHH
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1880)
++..+++...-...++|+..-..+.+.++... - ...+.++.|..-++..++.|+..|+.+|..++++++..+...
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~-~----~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWESILQICDLIRQGD-T----QAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS-S----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC-c----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 44444443333344577887777877776321 1 124678888888999999999999999999999887644322
Q ss_pred H--HHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCc
Q 000194 638 L--RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 638 l--~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
+ ++++..+..-+... .+..+++..+.++..-+...+
T Consensus 84 ias~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 84 VANKQTMEELKDLLKRQ-VEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HSSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhC
Confidence 2 23332222222333 567788888888887776654
No 323
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=50.61 E-value=68 Score=32.82 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=68.5
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHHH
Q 000194 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTY 648 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~ 648 (1880)
.++|+..-..+++.++.... ...+.++.|..-++..++.|+..|+.+|..++++++..|...+ ++++..++.-
T Consensus 29 ~~~Dw~~~leicD~I~~~~~-----~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l 103 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGSTPN-----GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAV 103 (163)
T ss_dssp SSCCHHHHHHHHHHHHHSSS-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 35788887778777753111 1246788888888889999999999999999999876544222 3344444443
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhCcc
Q 000194 649 LEQSSADNKCREESAKLLGCLIRNCER 675 (1880)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1880)
+... .++.+++.++.++..-....+.
T Consensus 104 ~~~~-~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 104 IKNK-AHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHTT-CCHHHHHHHHHHHHHHHHHTTT
T ss_pred HccC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 4332 5678888888888877776553
No 324
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=49.87 E-value=86 Score=35.90 Aligned_cols=141 Identities=9% Similarity=-0.036 Sum_probs=82.6
Q ss_pred hhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHH-h-----chhhh-hhcHHHHHHhcCHHHHHHH
Q 000194 1304 ALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYA-Q-----KELDV-QLKESWYEKLQRWDDALKA 1376 (1880)
Q Consensus 1304 AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~-~-----~~~~~-~~~~~~~e~lg~W~~Al~~ 1376 (1880)
|+-++|...... .......-.|..+|...|+.|.+.-++... . ...+. -+....+-+.|+-+.|...
T Consensus 85 a~~~l~~l~~~~------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566666555321 122334458899999999999998888754 1 22221 1233458999999999999
Q ss_pred HHHHHhccCC---Cch-h-HHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000194 1377 YTNKASQASN---PHI-V-LEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1377 y~~~~~~~~~---~~~-~-~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
+++..+..++ .++ . .....+|+..+..-++++.-....++.... .+++... .+...+.+++|+|+..+..+.
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~--~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQ--LGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHH--HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccH--HHHHHHHHHcCCHHHHHHHHH
Confidence 9876543220 011 1 122335666655444665555444443222 1221111 122238999999999999876
Q ss_pred hc
Q 000194 1452 RL 1453 (1880)
Q Consensus 1452 ~~ 1453 (1880)
.+
T Consensus 236 ~l 237 (310)
T 3mv2_B 236 LL 237 (310)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 325
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=49.53 E-value=1e+02 Score=30.66 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=67.3
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHH
Q 000194 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLT 647 (1880)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~ 647 (1880)
..++|+..-..+++.++... ....+.++.|-.-++..++.+...|+.+|..++++++..+...+ ++++..+..
T Consensus 18 l~~~dw~~ileicD~I~~~~-----~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQSR-----TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp SSSCCHHHHHHHHHHHTTST-----THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHCCC-----cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 34578888888888876321 11246788888888899999999999999999999876544322 344444333
Q ss_pred HHhcCCCChHhHHHHHHHHHHHHHhCc
Q 000194 648 YLEQSSADNKCREESAKLLGCLIRNCE 674 (1880)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1880)
-+. . .++.+++..+.++..-+...+
T Consensus 93 l~~-~-~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 93 VLN-K-GHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHH-H-SCHHHHHHHHHHHHHHHHHHT
T ss_pred Hhc-c-CCHHHHHHHHHHHHHHHHHhC
Confidence 332 2 467888888888877776543
No 326
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=49.50 E-value=2.6e+02 Score=29.49 Aligned_cols=141 Identities=12% Similarity=-0.024 Sum_probs=96.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000194 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~ 1646 (1880)
.+...+..++.+....|++..|...+.++... +++...+..+.+....|...+..+|+..+++....
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~- 82 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------------GDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA- 82 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC-
Confidence 45788888899999999999999999887653 24666677777666532212367899998876431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHH
Q 000194 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT--KWGKAWHSWALFNTA 1724 (1880)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~--~~~k~w~~wA~~n~~ 1724 (1880)
-.+.++..+|.....-. + ...+.++.+..|++|.+..+ ....+++.+|.+...
T Consensus 83 -----------------------g~~~a~~~Lg~~y~~g~-g-~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 83 -----------------------GSKSGEIVLARVLVNRQ-A-GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp -----------------------TCHHHHHHHHHHHTCGG-G-SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCHHHHHHHHHHHHcCC-C-CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 01344566666654310 0 13578999999999999887 457899999877654
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000194 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1880)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~ 1755 (1880)
-. ....-...|+..|-+++..
T Consensus 138 g~----------g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 138 GV----------HGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TS----------SSSCCHHHHHHHHHHHHHT
T ss_pred CC----------CCCCCHHHHHHHHHHHHHc
Confidence 11 1122355889999998876
No 327
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=49.14 E-value=3.1e+02 Score=30.29 Aligned_cols=117 Identities=13% Similarity=0.102 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHH----H
Q 000194 147 ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRAC----L 222 (1880)
Q Consensus 147 ~~~v~~~~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~----~ 222 (1880)
+.+.+..++..++. +.+.+...|.-.+.++.+.+..-+ .+.+.+++.++..++|+++.|-+.+..+...+ +
T Consensus 48 p~ll~~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l 122 (257)
T 3gs3_A 48 AELAEEFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGL 122 (257)
T ss_dssp GGGHHHHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34556666666664 344555666667778777774433 46778888899999999999887777766554 4
Q ss_pred HHHhhhch-h--hHHHH--HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000194 223 RVIEKRET-R--WRVQW--YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1880)
Q Consensus 223 ~~i~~r~~-~--~~~~~--~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1880)
+.+..... . ....| +..+-..+.+-+.+.+ .-++-.++..+..++-
T Consensus 123 ~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n-~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 123 QYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNEN-DGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSC-HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCC-cchHHHHHHHHHHHHH
Confidence 44443211 0 12334 5667777777666543 5778888887777664
No 328
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=48.80 E-value=26 Score=42.71 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=52.1
Q ss_pred HHhccchhhhhhhccchhcccccc--cCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc---------hhh----hhh
Q 000194 1295 AEKCRAFAKALHYKEMEFEGARSN--RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK---------ELD----VQL 1359 (1880)
Q Consensus 1295 a~~c~a~a~AL~y~E~~~~~~~~~--~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~---------~~~----~~~ 1359 (1880)
+.+.|.|..|+-+.|......... ...+....+...|..+|..+|+.|.|.-+.+.+-. +++ ...
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 334556666666555543221100 01112235667888899999999988877664321 111 122
Q ss_pred cHHHHHHhcCHHHHHHHHHHHHh
Q 000194 1360 KESWYEKLQRWDDALKAYTNKAS 1382 (1880)
Q Consensus 1360 ~~~~~e~lg~W~~Al~~y~~~~~ 1382 (1880)
.+..|...|+|++|+..|++.+.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 34468888999999999988764
No 329
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.66 E-value=32 Score=41.87 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=60.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh----cCCCChHHHHhHHHHHHHHH
Q 000194 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY----WTPAEPAARLEMAPMAANAA 1437 (1880)
Q Consensus 1362 ~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~----~~~~~~~~~~~~~~~~a~aa 1437 (1880)
..|.+.|++++|+++|.+.......+....+...+.||+....++|..+..+.... ....+++.+..+..+.....
T Consensus 139 ~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~ 218 (429)
T 4b4t_R 139 EYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHC 218 (429)
T ss_dssp HHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 34788999999999999876654444344678899999999999998887666531 12223444555555666666
Q ss_pred HHcCChhhHHH
Q 000194 1438 WNMGEWDQMAE 1448 (1880)
Q Consensus 1438 w~l~~Wd~~~~ 1448 (1880)
|..++|.....
T Consensus 219 l~~r~f~~Aa~ 229 (429)
T 4b4t_R 219 LAVRNFKEAAK 229 (429)
T ss_dssp GGTSCHHHHHH
T ss_pred HHhChHHHHHH
Confidence 77777765433
No 330
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=46.56 E-value=81 Score=35.55 Aligned_cols=129 Identities=17% Similarity=0.133 Sum_probs=79.5
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhH
Q 000194 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMR 1399 (1880)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~ 1399 (1880)
..+..-.+...+...|+++.+..++...... . ..-.....+-+.|+|++|+..++.... .+++........-+=.
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WPDKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCcccHHHHHHHHHH
Confidence 3455567888999999999998888633211 1 111223358899999999999985543 1222100123444556
Q ss_pred HHHHhhCHHHHHHHHhhhcCCCC-hHHHHhHHHHHHHHHHHcCChhhHHHHHhhc
Q 000194 1400 CLAALARWEELNNLCKEYWTPAE-PAARLEMAPMAANAAWNMGEWDQMAEYVSRL 1453 (1880)
Q Consensus 1400 cl~~Lg~w~~l~~~~~~~~~~~~-~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~ 1453 (1880)
++..||+++.-....+..-.... +..........+.+..++|+-+.-....+.+
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78999999887776665422211 3222333445667888899988876655543
No 331
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=45.37 E-value=1e+02 Score=37.29 Aligned_cols=86 Identities=6% Similarity=-0.006 Sum_probs=54.7
Q ss_pred HHhcCHHHHHHHHHHHHhcc-----CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhh-------hcCCCChHHHHhHHHH
Q 000194 1365 EKLQRWDDALKAYTNKASQA-----SNPHIVLEATLGRMRCLAALARWEELNNLCKE-------YWTPAEPAARLEMAPM 1432 (1880)
Q Consensus 1365 e~lg~W~~Al~~y~~~~~~~-----~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~-------~~~~~~~~~~~~~~~~ 1432 (1880)
.+.|+|++|+..|++.+... ++..+.......+...|..+|+|+.-..+.+. ......++.-..+..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n- 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK- 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH-
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-
Confidence 45789999999999987532 11112233455677778889999877666543 223334444433333
Q ss_pred HHHHHHHcCChhhHHHHHh
Q 000194 1433 AANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1433 ~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
.+...|..|+|+.-..+..
T Consensus 388 La~~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHH
Confidence 3568899999988776544
No 332
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=43.76 E-value=1.4e+02 Score=34.16 Aligned_cols=109 Identities=7% Similarity=0.017 Sum_probs=64.7
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHhhcC--ccchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh-hchhhHHH
Q 000194 159 DWLRGDRVEYRRFAAVLILKEMAENAS--TVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK-RETRWRVQ 235 (1880)
Q Consensus 159 ~~l~~~~~~~~R~aA~~~l~~la~~~p--~~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~-r~~~~~~~ 235 (1880)
..+.++....-+.-++.++.-+..+.. ..+..+..++++.+...+.+++..+|.|++..+-++.....+ ++....
T Consensus 154 ~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~-- 231 (304)
T 3ebb_A 154 NLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK-- 231 (304)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH--
T ss_pred HhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH--
Confidence 334333333334444444444444322 245567788999888888889999999998888776654432 221111
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc
Q 000194 236 WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT 271 (1880)
Q Consensus 236 ~~~~~l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~ 271 (1880)
..++..+..-+....+.|..++++.+||.|+...
T Consensus 232 --~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 232 --AQCLSLISTILEVVQDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp --HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCC
Confidence 2233333333333335799999999999998643
No 333
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=43.59 E-value=1.2e+02 Score=30.34 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=66.7
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHH--HHHHHHHHHH
Q 000194 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTY 648 (1880)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~ 648 (1880)
.++|+..-..+++.++... -...+.++.|..-++..++.|...|+.+|..++++++..|...+ ++++..+..-
T Consensus 15 ~~~dw~~~leicD~I~~~~-----~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl 89 (148)
T 1mhq_A 15 SEQDWSAIQNFCEQVNTDP-----NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKV 89 (148)
T ss_dssp SSCCHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHcCC-----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHH
Confidence 3567777667777665211 11245788888888999999999999999999999976553333 3444443333
Q ss_pred Hhc----CCCChHhHHHHHHHHHHHHHhCcc
Q 000194 649 LEQ----SSADNKCREESAKLLGCLIRNCER 675 (1880)
Q Consensus 649 l~~----~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1880)
+.. ...+..+++..+.++..-+...+.
T Consensus 90 ~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 90 LSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp TCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 321 113567888888888888776653
No 334
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=39.92 E-value=41 Score=44.80 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=54.6
Q ss_pred cHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH--hhCchhhHHHHHHHhcCCcHHHHHHHHH
Q 000194 1782 TEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIG--QSHPQALMYPLLVACKSISNLRRAAAQE 1859 (1880)
Q Consensus 1782 ~~~v~~~~~~~~~~ip~~~wl~~ipQLiaRi~~~~~~v~~~l~~lL~~i~--~~hPqa~ly~L~~~~kS~~~~R~~~a~~ 1859 (1880)
++.|.+.-.+.+...|.+.|+..+|||+-.|-+..-.-..+..-||.+-. ....|+++|.|.+-..+ +....+...
T Consensus 485 d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~--~~~~~r~~~ 562 (940)
T 2wxf_A 485 DCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHV--PSVALRFGL 562 (940)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGCSSSSCHHHHHHHHHHHHCHHHHHHHHHHHHTTTTC--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhChHHHHHHHHHheecccC--chHHHHHHH
Confidence 35677777788999999999999999999997753110122222333333 24678999998775443 344556666
Q ss_pred HHHHHhh
Q 000194 1860 VVDKVRQ 1866 (1880)
Q Consensus 1860 Il~~~~~ 1866 (1880)
|++.+..
T Consensus 563 ile~~~~ 569 (940)
T 2wxf_A 563 IMEAYCR 569 (940)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7776654
No 335
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=36.84 E-value=64 Score=42.82 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=31.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000194 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1880)
Q Consensus 1363 ~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1880)
..++.|+++.|..+|.+. .+ ....+++|..+|+|+.-..+++..
T Consensus 732 ~a~~~~~~~~A~~~~~~~----g~-------~~~a~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 732 DAETTGKFNLAFNAYWIA----GD-------IQGAKDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp HHHHTTCHHHHHHHHHHH----TC-------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHcCchHHHHHHHHHc----CC-------HHHHHHHHHHcCChHHHHHHHHHh
Confidence 356778888888777542 11 234677888899999988888875
No 336
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=35.61 E-value=3.5e+02 Score=31.00 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=49.2
Q ss_pred HHHHHhcCCChhHHHHHHHhccCCCCc----chhhccHhhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcc
Q 000194 565 LLIAAVADADVTVRHSIFSSLYGNRGF----DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA 632 (1880)
Q Consensus 565 Ll~~~~~d~~~~vR~~~l~~l~~~~~f----d~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1880)
|+.+ +.+.+.++..-+|.+|...-.+ +....+++.++.++..++.....|.+.|+++|..++.+.+.
T Consensus 165 Li~v-i~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~ 235 (339)
T 3dad_A 165 LIRV-GAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN 235 (339)
T ss_dssp HHHH-HTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHH-HHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc
Confidence 4443 4667888888888888521111 12234678899999888888889999999999999888754
No 337
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=35.23 E-value=1.3e+02 Score=40.23 Aligned_cols=86 Identities=8% Similarity=0.054 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCChHHHhHHHHHHhc-----------hhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHh
Q 000194 1325 VAVVEALIHINNQLHQHEAAVGILTYAQK-----------ELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEA 1393 (1880)
Q Consensus 1325 ~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-----------~~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~ 1393 (1880)
.-++..|++-|.+-|+.|.|..++..... .+..-+. -|-+.|++++|++.|++-...+-.|+ .-.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~--Glck~G~~~eA~~Lf~eM~~~G~~PD--vvT 202 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML--GWARQGAFKELVYVLFMVKDAGLTPD--LLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHTTCCCC--HHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHH--HHHhCCCHHHHHHHHHHHHHcCCCCc--HHH
Confidence 45788999999999999999999964221 1122223 37899999999999998665544554 235
Q ss_pred HhhHhHHHHHhhCH-HHHHHHH
Q 000194 1394 TLGRMRCLAALARW-EELNNLC 1414 (1880)
Q Consensus 1394 ~~g~m~cl~~Lg~w-~~l~~~~ 1414 (1880)
...+|.|+.+.|++ +....+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll 224 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCL 224 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHH
Confidence 67899999999985 4433333
No 338
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=34.48 E-value=1.6e+02 Score=36.31 Aligned_cols=87 Identities=9% Similarity=-0.002 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcCCcc--cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHH---HHHHHHHh
Q 000194 1551 VWQALLAVRALVLPPTE--DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMY---AYLKYQWS 1625 (1880)
Q Consensus 1551 ~w~~iL~~R~~vl~~~e--~~~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~---~~ak~lw~ 1625 (1880)
..++.|..|.-++.+.. ...++-.++.+.+..|+++.|.....+++..... .....+|.+.. -.++++|.
T Consensus 331 l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~-----~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 331 LCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK-----LYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHH
Confidence 56788899999998754 4788899999999999999999988776643110 11113565544 56788899
Q ss_pred cCCcchHHHHHHHHHHHHHH
Q 000194 1626 LGEDLKRKEAFARLQTLAME 1645 (1880)
Q Consensus 1626 ~g~~~~~~~Al~~L~~~~~~ 1645 (1880)
+|+ ..+|...+++-+.-
T Consensus 406 ~G~---~~eA~~~~~~Al~i 422 (490)
T 3n71_A 406 AGH---IEVGHGMICKAYAI 422 (490)
T ss_dssp TTC---HHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHH
Confidence 995 68999998886543
No 339
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=34.47 E-value=2e+02 Score=26.51 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=41.0
Q ss_pred HhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCC
Q 000194 1397 RMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDD 1455 (1880)
Q Consensus 1397 ~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~ 1455 (1880)
++-+|-+-|.|+.-..+.+.... ..+-|++|-|+|++|--+.++.++..+..
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c~-------pdlepw~ALce~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLAY-------PDLEPWLALCEYRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCC-------GGGHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHcchhHHHHHHhcCCCCC-------chHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45568889999998888776532 23558999999999999999999866654
No 340
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=34.38 E-value=1.6e+02 Score=35.56 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=51.5
Q ss_pred HHHhcCHHHHHHHHHHHHhccC-----CCchhHHhHhhHhHHHHHhhCHHHHHHHHhh-------hcCCCChHHHHhHHH
Q 000194 1364 YEKLQRWDDALKAYTNKASQAS-----NPHIVLEATLGRMRCLAALARWEELNNLCKE-------YWTPAEPAARLEMAP 1431 (1880)
Q Consensus 1364 ~e~lg~W~~Al~~y~~~~~~~~-----~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~-------~~~~~~~~~~~~~~~ 1431 (1880)
+.+.|+|++|++.|++.+.... +..........+..-|..+|+|+.-..+.+. ......+..-..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 4456788999998888875321 1111233345566667788888776655543 222333444333333
Q ss_pred HHHHHHHHcCChhhHHHHHh
Q 000194 1432 MAANAAWNMGEWDQMAEYVS 1451 (1880)
Q Consensus 1432 ~~a~aaw~l~~Wd~~~~~~~ 1451 (1880)
.+...|..|+|+.-..+..
T Consensus 377 -La~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 377 -VGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp -HHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHhcCCHHHHHHHHH
Confidence 3557888999988766544
No 341
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.96 E-value=1.6e+02 Score=31.82 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=69.5
Q ss_pred HHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHHhhcCcc
Q 000194 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1880)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~~~~~~~ 764 (1880)
++.++.++.++.....+......++..|. .. ... -.+.+..|.+.|+.. +..+...|+..|..++.++|..
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~ileicD~I~----~~--~~~--~k~a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~ 79 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWESILQICDLIR----QG--DTQ--AKYAVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQT 79 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHH----TT--SSC--HHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHh----CC--Ccc--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchH
Confidence 34455666554332345555444444432 21 111 256788888888854 5667788899999999999975
Q ss_pred cccCCcchHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 765 i~p~~~~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+..-.--.++++.|..+++...+..|+..++.++..-+
T Consensus 80 f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 80 VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 32221124677778777766667899999998886654
No 342
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=33.43 E-value=3.7e+02 Score=30.79 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=68.0
Q ss_pred HHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhcccc
Q 000194 24 DALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVAL 101 (1880)
Q Consensus 24 ~~~~~l~~~l~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~ 101 (1880)
-.+..+++.|.+++. +.++|...|+.++. -+.++...|++. =...+.+++...+.+..--++.|+.+|.....
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q-----~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~ 192 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQ-----EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD 192 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhh-----cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc
Confidence 456778888887653 55557777777552 112233333311 02335566667788888889999999976522
Q ss_pred CcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC
Q 000194 102 GENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142 (1880)
Q Consensus 102 ~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~l~~L~~~~ 142 (1880)
|- ...+ ..|..-+-.++. +.+..|.+.|.+.|-.++...
T Consensus 193 Gm-~gvvs~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 193 GM-LGVVAHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HH-HHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHC
T ss_pred cc-cchhCCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccC
Confidence 21 1111 234444444443 467899999999998888763
No 343
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=32.99 E-value=1.4e+02 Score=36.10 Aligned_cols=58 Identities=14% Similarity=-0.028 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhcCChHHHhHHHHHHhch---------hh----hhhcHHHHHHhcCHHHHHHHHHHHHh
Q 000194 1325 VAVVEALIHINNQLHQHEAAVGILTYAQKE---------LD----VQLKESWYEKLQRWDDALKAYTNKAS 1382 (1880)
Q Consensus 1325 ~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---------~~----~~~~~~~~e~lg~W~~Al~~y~~~~~ 1382 (1880)
..+...|..+|..+|+.|.|....+.+-.. ++ ....+..|-..|+|++|+..|++.+.
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 356678888999999999887766532211 11 11234468889999999999998774
No 344
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=32.42 E-value=1.1e+02 Score=35.45 Aligned_cols=101 Identities=11% Similarity=-0.074 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch-----------------HHHHHHHHHHHHHHHhhhccC
Q 000194 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG-----------------KAWHSWALFNTAVMSHYTLRG 1733 (1880)
Q Consensus 1671 ~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~-----------------k~w~~wA~~n~~~~~~~~~~~ 1733 (1880)
.+..+..+|...... ...++.+..|.+|++++|+.. .+|+.+|..+.+ .+
T Consensus 178 ~a~~~~~~g~~~~~~------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-------~g 244 (338)
T 2if4_A 178 AADRRKMDGNSLFKE------EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-------LK 244 (338)
T ss_dssp HHHHHHHHHHHTCSS------SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-------TT
T ss_pred HHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-------cC
Confidence 466677777765433 456899999999999988754 255555544332 11
Q ss_pred CCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000194 1734 LPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1880)
Q Consensus 1734 ~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1880)
-...|+..|-+++.+. ........++=.+++..|...+....+++.+..-|
T Consensus 245 -------~~~~A~~~~~~al~~~------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 245 -------RYDEAIGHCNIVLTEE------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp -------CCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred -------CHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 2237889999999875 23456678888888888988888888887765444
No 345
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=32.05 E-value=3.1e+02 Score=28.15 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcC--------CCCcchHHHHHHHHHhh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRI--------PAERDSGFIALGEMAGA 351 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~--------~~~r~~a~~alg~la~~ 351 (1880)
+.+..+...+.++++.|+..++.++..+...++..|...+- ..++..|...+.. ...|..++..|..-+.+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45556667778999999999999999999998888854322 4566666666642 11356788888887777
Q ss_pred chhhhhhhhhHHHHHHHH
Q 000194 352 LDGELFHYLPTITSHLRE 369 (1880)
Q Consensus 352 v~~~~~p~l~~i~~~l~~ 369 (1880)
.++ .|++.+....++.
T Consensus 130 f~~--~~~i~~~y~~Lk~ 145 (171)
T 1juq_A 130 LPE--EAKIKDAYHMLKR 145 (171)
T ss_dssp CTT--CHHHHHHHHHHHH
T ss_pred cCC--CcHHHHHHHHHHH
Confidence 765 3455555555544
No 346
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=31.50 E-value=2e+02 Score=37.89 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=57.8
Q ss_pred HHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHH
Q 000194 1334 INNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNL 1413 (1880)
Q Consensus 1334 iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~e~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~ 1413 (1880)
++-++|+.|.|.-+.+.......-...+..+.+.|+++.|..+|.+.- + ..+.+..+..+|.++.+...
T Consensus 661 ~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~----d-------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAH----D-------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----C-------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc----C-------hhhhHHHHHHcCCHHHHHHH
Confidence 344556666555443321111111223334778888888888887531 1 24566666678877777666
Q ss_pred HhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhc
Q 000194 1414 CKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRL 1453 (1880)
Q Consensus 1414 ~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~ 1453 (1880)
++..-. ......+..+++.+|+++.-.+....+
T Consensus 730 ~~~a~~-------~~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-------TGKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-------TTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-------cCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 543211 111134566888899999887765543
No 347
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=31.34 E-value=62 Score=43.70 Aligned_cols=116 Identities=15% Similarity=0.117 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhhccccCCCcchHHhHHHHHHHH-------------HhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHH
Q 000194 1744 HAVTGYFHSIACAAHAKGVDDSLQDILRLLTLW-------------FNHGATEEVQIALQKGFAHVNINTWLVVLPQIIA 1810 (1880)
Q Consensus 1744 ~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLw-------------f~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLia 1810 (1880)
.|+.-|++|+..+ .......+..||.-| ..|. ++.|.+.-.+.+...|.+.++..+|||+-
T Consensus 593 ~aL~k~l~sv~w~-----~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~-d~~VR~yAV~~L~~~~d~~l~~yLpQLVQ 666 (1092)
T 2y3a_A 593 QSLPKLLLSIKWN-----KLEDVAQLQALLQIWPKLPPREALELLDFNYP-DQYVREYAVGCLRQMSDEELSQYLLQLVQ 666 (1092)
T ss_dssp GGHHHHHHHSCTT-----CHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCC-CTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCC-----CHHHHHHHHHHHccCCCCCHHHHHHhcCccCC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555566665442 222344455555555 2333 23566666788899999999999999999
Q ss_pred hccCCChhHHHHHHHHHHHHHh--hCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 000194 1811 RIHSNNRAVRELIQSLLVRIGQ--SHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQH 1867 (1880)
Q Consensus 1811 Ri~~~~~~v~~~l~~lL~~i~~--~hPqa~ly~L~~~~kS~~~~R~~~a~~Il~~~~~~ 1867 (1880)
.|-+..-.-..+..-||.+-.+ ...|+++|.|.+-..+ +....+...|++.+...
T Consensus 667 aLkyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~--~~~~~r~~~lle~~~~~ 723 (1092)
T 2y3a_A 667 VLKYEPFLDCALSRFLLERALDNRRIGQFLFWHLRSEVHT--PAVSVQFGVILEAYCRG 723 (1092)
T ss_dssp HHHHCSSSSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHH
T ss_pred HHhcccccccHHHHHHHHHHhhChHHHHHHHHHeeecccC--chHHHHHHHHHHHHHhh
Confidence 9966531111233333444333 3678899999887654 33445566677776543
No 348
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=31.25 E-value=53 Score=24.85 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=26.3
Q ss_pred hhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHh
Q 000194 1507 QLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQ 1543 (1880)
Q Consensus 1507 ~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~ 1543 (1880)
.|.|||..++......+.....++.+.+...|..|-.
T Consensus 13 rldelekalealsaedghddvgqrlesllrrwnsrra 49 (60)
T 1pzq_A 13 RLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRA 49 (60)
T ss_dssp HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccc
Confidence 4788999888776555543334677888899988754
No 349
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=29.78 E-value=8.1e+02 Score=29.48 Aligned_cols=140 Identities=16% Similarity=0.055 Sum_probs=93.8
Q ss_pred ccHHHHHHHHHHHHhc-----CChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 000194 1567 EDVETWLKFASLCRKS-----GRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641 (1880)
Q Consensus 1567 e~~~~~lk~a~laRk~-----g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~ 1641 (1880)
.+...+..++.+..+. ++++.|...+.++... +++...+..+.+....|...+..+|+..+++
T Consensus 289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~------------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ------------GDATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4567788888888887 8999999988887654 2355666666666655533346788888887
Q ss_pred HHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000194 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1880)
Q Consensus 1642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1880)
.+.. . .+.++..+|.+...-. + ...+.++.+..|++|.+.. ...+|+..|.+
T Consensus 357 a~~~-~-----------------------~~~a~~~Lg~~y~~g~-g-~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~ 408 (490)
T 2xm6_A 357 AAAK-G-----------------------EKAAQFNLGNALLQGK-G-VKKDEQQAAIWMRKAAEQG--LSAAQVQLGEI 408 (490)
T ss_dssp HHHT-T-----------------------CHHHHHHHHHHHHHTS-S-SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHC-C-----------------------CHHHHHHHHHHHHcCC-C-CCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 5532 0 1345667777765421 1 1357899999999998864 57788888877
Q ss_pred HHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1722 NTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1722 n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
...-. + ...-...|+..|-+++..+
T Consensus 409 y~~g~------g----~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 409 YYYGL------G----VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTS------S----SCCCHHHHHHHHHHHHHHH
T ss_pred HHcCC------C----CCCCHHHHHHHHHHHHHCC
Confidence 55310 1 1123458899999988775
No 350
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=29.75 E-value=6.9e+02 Score=29.34 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHhhcCc--cchhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhc--hhhHHHHHHHH---
Q 000194 168 YRRFAAVLILKEMAENAST--VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TRWRVQWYYRM--- 240 (1880)
Q Consensus 168 ~~R~aA~~~l~~la~~~p~--~l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~~~~~~--- 240 (1880)
...+..+.+|+++..+... .+.. -+..+..|..+|..+++.+|..|.+-|..+..+ ...+ ....-+.+..+
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~-~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~-~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLE-TEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL-PQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHT-CSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC-CSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHc-ChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC-cCcCCcHHHHHHHHHHHHHh
Confidence 4457778888887654321 1111 123566778888888999999999888765432 2101 00011111111
Q ss_pred -----HHHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000194 241 -----FEATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1880)
Q Consensus 241 -----l~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1880)
|..+..+|.+....+...+++..++.++.+..
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence 34455667665567888999999999998654
No 351
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=29.55 E-value=2.7e+02 Score=28.08 Aligned_cols=111 Identities=11% Similarity=0.126 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC-CCCHhHHHHHHHHHHhhhcCCcccccH
Q 000194 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLP 636 (1880)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~fd~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p 636 (1880)
+...+++...-...++|+..-..+++.++.... ...+.++.|..-++ ..++.|+..|+.+|..++++++..+..
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~-----~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ 91 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEE-----GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHV 91 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSS-----HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCc-----cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 344444433323345777777777777752111 12467888888886 578999999999999999998765543
Q ss_pred HH--HHHHHH-HHHHHhc-CCCChHhHHHHHHHHHHHHHhC
Q 000194 637 AL--RRHLIQ-LLTYLEQ-SSADNKCREESAKLLGCLIRNC 673 (1880)
Q Consensus 637 ~l--~~~l~~-~l~~l~~-~~~~~~~r~~a~~~L~~l~~~~ 673 (1880)
.+ ++++.+ ++..+.. ......+|+.++.++..-....
T Consensus 92 eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 92 LVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 22 334444 2333322 1133567888887777776654
No 352
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=28.14 E-value=4.7e+02 Score=26.20 Aligned_cols=88 Identities=11% Similarity=0.001 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCC
Q 000194 1612 PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDD 1691 (1880)
Q Consensus 1612 ~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~ 1691 (1880)
.++..+.|+-.|-..++.....+++..|++++..- .+.....|++.+|-=...+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--------------------~p~~~rd~lY~LAv~~~kl------ 84 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--------------------SKEEQRDYVFYLAVGNYRL------ 84 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--------------------CHHHHHHHHHHHHHHHHHT------
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------------------CccchHHHHHHHHHHHHHc------
Confidence 46788888888877664444679999999987631 0113445555555544444
Q ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000194 1692 ESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1880)
Q Consensus 1692 ~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1880)
...+...+++..+.+.+|+|..+..--..+.+.+
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999988877555554443
No 353
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=28.07 E-value=3.7e+02 Score=27.25 Aligned_cols=89 Identities=10% Similarity=-0.023 Sum_probs=58.1
Q ss_pred HHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH--hHHHHHHHHHhcCC
Q 000194 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGA 742 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~l~p~l~~~l~d~~ 742 (1880)
-|+++++..+. -....+..+.+++... ++.+...++..+..++..+|..|...+. .++..+.+.+....
T Consensus 38 eicD~I~~~~~----~~keA~ral~krl~~~-----n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~ 108 (163)
T 1x5b_A 38 DICDKVGSTPN----GAKDCLKAIMKRVNHK-----VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKA 108 (163)
T ss_dssp HHHHHHHHSSS----HHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCc----cHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCC
Confidence 34555554321 1245566777888764 7888888899999999999986654332 35666666665434
Q ss_pred chhhHHHHHHHHHHHHhhcC
Q 000194 743 AVTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 743 ~~~~r~~Al~~Lg~l~~~~~ 762 (1880)
+..+|+.++..+..-....+
T Consensus 109 ~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 109 HPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 56788777776666655544
No 354
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=27.90 E-value=2e+02 Score=26.47 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=40.2
Q ss_pred HhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCC
Q 000194 1397 RMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDD 1455 (1880)
Q Consensus 1397 ~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~ 1455 (1880)
++-+|-+-|.|+.-..+.+.... ..+-|++|-|+|++|--+.++.++..+..
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c~-------pdlepw~ALce~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNPW-------PALEPWFALCEWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCCC-------GGGHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcchhHHHHHHhcCCCCC-------chHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45568889999988877766431 24568999999999999999998865543
No 355
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=27.67 E-value=4e+02 Score=31.28 Aligned_cols=186 Identities=10% Similarity=0.079 Sum_probs=100.7
Q ss_pred hhHHHHHHHhCCCCHhHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhCccccc
Q 000194 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1880)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1880)
.++..|+..++.+++.-|.....++.++-.... ...+.+|+.+...+...-+......--.+.++++|.++....-.++
T Consensus 174 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~-~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLK 252 (392)
T 2jak_A 174 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 252 (392)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCc
Confidence 567778888888999999999999988765543 2357778877766655544312222335788899999987653344
Q ss_pred C-chHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 000194 679 P-YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1880)
Q Consensus 679 p-y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l 757 (1880)
+ +..-+..+++|..+... -........+|+....+..+....+.+. .+++. .-..+..+...=+.-+..+
T Consensus 253 eehk~Fl~~vLlPLhk~~~----l~~y~~qL~ycv~qf~eKDp~L~~~vi~----~LLk~-WP~tns~KevlFL~eleei 323 (392)
T 2jak_A 253 EEHKIFLLKVLLPLHKVKS----LSVYHPQLAYCVVQFLEKDSTLTEPVVM----ALLKY-WPKTHSPKEVMFLNELEEI 323 (392)
T ss_dssp HHHHHHHHHTTGGGGTSGG----GGGTHHHHHHHHHHHHHHCGGGHHHHHH----HHHHS-SCSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhccCCc----HHHhHHHHHHHHHHHHhcCchhHHHHHH----HHHHh-CCCCCchHHHHHHHHHHHH
Confidence 3 33334566677665431 2223345556666555544332222221 11111 0112233433445556666
Q ss_pred HhhcCcccccCC-cchHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000194 758 VQSTGYVITPYN-EYPQLLGLLLKMLNGELVWSTRREVLKV 797 (1880)
Q Consensus 758 ~~~~~~~i~p~~-~~p~ll~~Ll~~L~~~~~~~vr~~~l~~ 797 (1880)
.+.++.. .+. ....+...+...+.+ .+-.|...|+..
T Consensus 324 Le~~~~~--~f~~i~~~lF~~la~ci~S-~hfqVAErAL~~ 361 (392)
T 2jak_A 324 LDVIEPS--EFVKIMEPLFRQLAKCVSS-PHFQVAERALYY 361 (392)
T ss_dssp HHTCCHH--HHHHHHHHHHHHHHHHHTC-SSHHHHHHHHGG
T ss_pred HHhCCHH--HHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHH
Confidence 6655332 010 113344444444544 356676666544
No 356
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=27.60 E-value=3.5e+02 Score=27.16 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000194 1612 PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME-LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1880)
Q Consensus 1612 ~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~ 1690 (1880)
+|..=..|++.+=+.|+.. ....+..+.+.-.. +... .+.....-+..+.....++.|. ++
T Consensus 12 ~yd~W~~yl~llE~~g~p~-~d~~l~rlrd~YerAia~~-----------Pp~k~~~wrrYI~LWIrYA~~~-ei----- 73 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPL-SDALLNKLIGRYSQAIEAL-----------PPDKYGQNESFARIQVRFAELK-AI----- 73 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSC-CHHHHHHHHHHHHHHHHHS-----------CGGGGTTCHHHHHHHHHHHHHH-HH-----
T ss_pred CHHHHHHHHHHHHHcCCCc-hhhHHHHHHHHHHHHHHcC-----------CccccccHHHHHHHHHHHHHHH-Hh-----
Confidence 4677777888887777641 12233333322211 1110 0111234466788999999995 33
Q ss_pred CCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000194 1691 DESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1880)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~ 1756 (1880)
.++++..+.|+.|.+++++-.|.|..+|.| |+- ..-+..|-+=..+||.++
T Consensus 74 -~D~d~aR~vy~~a~~~hKkFAKiwi~~AqF--EiR------------qgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 -QEPDDARDYFQMARANCKKFAFVHISFAQF--ELS------------QGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -HCGGGCHHHHHHHHHHCTTBHHHHHHHHHH--HHH------------TTCHHHHHHHHHHHHHTT
T ss_pred -cCHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHH------------cccHHHHHHHHHHHhccC
Confidence 346788899999988899999999999986 321 124456666677777664
No 357
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=27.44 E-value=4.7e+02 Score=26.01 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC--------CCcchHHHHHHHHHhh
Q 000194 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP--------AERDSGFIALGEMAGA 351 (1880)
Q Consensus 281 ~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~--------~~r~~a~~alg~la~~ 351 (1880)
+.+..+...+.++++.++..++.++..+...++..|....- ..+|..|...+.+. ..|..++..|..-+.+
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34556666678999999999999999999999888854322 56777777776531 1356777777777766
Q ss_pred chh
Q 000194 352 LDG 354 (1880)
Q Consensus 352 v~~ 354 (1880)
.++
T Consensus 118 f~~ 120 (148)
T 1mhq_A 118 FPE 120 (148)
T ss_dssp CTT
T ss_pred cCC
Confidence 654
No 358
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=26.88 E-value=1.2e+02 Score=29.94 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHH
Q 000194 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVT 318 (1880)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~ 318 (1880)
.+.+++..+-..-...+.++++.++..++++++.+..-++.+|..|+....+.|+.
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~ 86 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRR 86 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHH
Confidence 55666653322111345789999999999999999999999999999998888876
No 359
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=26.13 E-value=3.5e+02 Score=26.64 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=42.0
Q ss_pred CcchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 165 RVEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 165 ~~~~~R~aA~~~l~~la~~~p~~l~~~l--~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
++...-.-|+.+|..+..||+..|...+ ..+++.+...+..+++.||+.....+..-..
T Consensus 54 ~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 54 KDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3444566788899999999999887554 4456555555556788999888877665443
No 360
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=25.35 E-value=1.7e+02 Score=32.13 Aligned_cols=138 Identities=18% Similarity=0.277 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhCc---ccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhH--HhHHHHHH
Q 000194 661 ESAKLLGCLIRNCE---RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIV 735 (1880)
Q Consensus 661 ~a~~~L~~l~~~~~---~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~l~p~l~ 735 (1880)
+|+.+|..+|.+.. .+++..++- -+.|.+...+..++...++.+++..+|.|++....++..|+ .+++|..+
T Consensus 75 naLaLlQcvAshpetr~~Fl~a~ipl---yLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 75 NALALLQCVASHPETRSAFLAAHIPL---FLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHTTGGG---GTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHcCcchhhHHHHccchH---HhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 45556666665321 122222222 23444443322123456788889999999988777777776 47899999
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhhc-C--cccccCCc---chHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 000194 736 EALLDGAAVTKREVAVSTLGQVVQST-G--YVITPYNE---YPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 736 ~~l~d~~~~~~r~~Al~~Lg~l~~~~-~--~~i~p~~~---~p~ll~~Ll~~L~~~~~~~vr~~~l~~lg~lg 802 (1880)
+.+.-+ +.-.|..|...+.++...- | +...-+.. .-.++..+...+..+.++.+-+.+++|.-.+.
T Consensus 152 rime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 152 RIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred HHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 999876 3456667777676665321 1 11111111 12344444444445557777777777765553
No 361
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=25.13 E-value=1.1e+02 Score=33.44 Aligned_cols=70 Identities=4% Similarity=0.020 Sum_probs=49.9
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 000194 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1880)
Q Consensus 154 ~~~~~~~l~~~~~~~~R~aA~~~l~~la~~~p~~-l~~~l~~i~~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1880)
...+.+|+.++..+.+|.|-+.-...++...... =..++..+++.+-..+.|++..||.|...+|+.+..
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk 180 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI 180 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Confidence 4457789988888887777552211223222121 236788899989899999999999999999988764
No 362
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=24.93 E-value=3.5e+02 Score=27.30 Aligned_cols=115 Identities=9% Similarity=0.118 Sum_probs=70.7
Q ss_pred CchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHHhHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 000194 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1880)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l~p~l~~~l~d~~~~~~r~~Al~~Lg~l~ 758 (1880)
||-.+ +..++.++.++...+.+......++..|. ... . --.+.+..+.+.|+...+..+...|+.-|..++
T Consensus 12 p~~s~-~~~~IekATs~~l~~~Dw~~~leicD~I~----~~~--~--~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~v 82 (157)
T 1elk_A 12 PFSSP-VGQRIEKATDGSLQSEDWALNMEICDIIN----ETE--E--GPKDALRAVKKRIVGNKNFHEVMLALTVLETCV 82 (157)
T ss_dssp GGGSH-HHHHHHHHTCTTCSSCCHHHHHHHHHHHH----HSS--S--HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHcCCCCCCcCHHHHHHHHHHHh----CCC--c--cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44333 45666666665433446655555554432 211 1 235677788888874334566778999999999
Q ss_pred hhcCcccccCCcchHHHHH-HHHHhc--CCCCHHHHHHHHHHHHHHc
Q 000194 759 QSTGYVITPYNEYPQLLGL-LLKMLN--GELVWSTRREVLKVLGIMG 802 (1880)
Q Consensus 759 ~~~~~~i~p~~~~p~ll~~-Ll~~L~--~~~~~~vr~~~l~~lg~lg 802 (1880)
.++|..+..-.--.++++. |..++. ...+..||..++.++..-+
T Consensus 83 kNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 83 KNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 9999764321112467776 677773 2335789998888876543
No 363
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.89 E-value=7.7e+02 Score=30.11 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHH
Q 000194 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYF 1750 (1880)
Q Consensus 1671 ~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~y~ 1750 (1880)
.-+|+.-+|+-..- ....+....+|.+|..+.|+.+.+||++|...-. + .....|+-.|.
T Consensus 151 ~hr~l~~LGDL~RY------~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-------~-------~~~l~a~y~y~ 210 (497)
T 1ya0_A 151 CQHCLVHLGDIARY------RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-------K-------GDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-------T-------TCHHHHHHHHH
T ss_pred HHHHHHHcccHHHH------HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-------c-------cccHHHHHHHH
Confidence 34666667764321 1346788999999999999999999999966432 0 13346889999
Q ss_pred HHHhhccccCCCcchHHhHHHHHHHHH
Q 000194 1751 HSIACAAHAKGVDDSLQDILRLLTLWF 1777 (1880)
Q Consensus 1751 ~si~~~~~~~~~~~~~q~~~RlLtLwf 1777 (1880)
||+.... ....+...+.+++.-++
T Consensus 211 rsl~~~~---Pf~~a~~nL~~~f~~~~ 234 (497)
T 1ya0_A 211 RSIAVKF---PFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHSSSB---CCHHHHHHHHHHHHHHT
T ss_pred HHHhcCC---CChhHHHHHHHHHHHHH
Confidence 9987631 12224444555554433
No 364
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=22.35 E-value=1.8e+02 Score=28.33 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHH
Q 000194 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLA 131 (1880)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~Li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~a 131 (1880)
.+|++.+.+-++...++.|++.++.+|.++.-.... .......|.+.|..++....|++..+..
T Consensus 39 ~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl 103 (132)
T 4flb_A 39 STIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSV 103 (132)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHH
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445666666666677889999999999998654222 2234455666666666543344444433
No 365
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=22.33 E-value=2.9e+02 Score=27.62 Aligned_cols=85 Identities=11% Similarity=0.082 Sum_probs=56.3
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC--------CCcchHHHHHHHHHhhc
Q 000194 282 VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP--------AERDSGFIALGEMAGAL 352 (1880)
Q Consensus 282 i~~~ll~~~~~~~~~Vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~--------~~r~~a~~alg~la~~v 352 (1880)
.+..+...+.++++.++..++.++..+...++..|-...- .+++..|...+.+. ..|...+..|..-+.+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4455666678999999999999999999999988843221 45666666666421 13567777777777766
Q ss_pred hhhhhhhhhHHHHHHH
Q 000194 353 DGELFHYLPTITSHLR 368 (1880)
Q Consensus 353 ~~~~~p~l~~i~~~l~ 368 (1880)
++. |.+.++...++
T Consensus 129 ~~~--p~i~~~Y~~Lk 142 (149)
T 3g2s_A 129 PEE--VKIAEAYQMLK 142 (149)
T ss_dssp TTC--HHHHHHHHHHH
T ss_pred CCC--chHHHHHHHHH
Confidence 552 33444444443
No 366
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=22.08 E-value=4.4e+02 Score=23.83 Aligned_cols=87 Identities=6% Similarity=0.085 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000194 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1880)
Q Consensus 1613 ~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~ 1692 (1880)
+.-.++.+++...+|+ -..|+.-++..+......... + + ....--..++.|+.++|+
T Consensus 5 a~dc~~lG~~~~~~~~---y~~A~~W~~~Al~~~~~~~~~-~-----~--~~~~i~~~L~~~~~~~g~------------ 61 (104)
T 2v5f_A 5 AEDCFELGKVAYTEAD---YYHTELWMEQALRQLDEGEIS-T-----I--DKVSVLDYLSYAVYQQGD------------ 61 (104)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCCC-S-----S--CHHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHHHccc---hHHHHHHHHHHHHhhhccCCC-c-----c--cHHHHHHHHHHHHHHccC------------
Confidence 4556788889999885 678999998877654321100 0 0 000011234555555554
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000194 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1880)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1880)
.+..+..|++|.+++|+...+.+.++.+..
T Consensus 62 -~~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 62 -LDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 467889999999999999998888874433
No 367
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=21.12 E-value=9.4e+02 Score=27.27 Aligned_cols=178 Identities=12% Similarity=-0.044 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000194 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1880)
Q Consensus 1570 ~~~lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~~~ak~lw~~g~~~~~~~Al~~L~~~~~~~~~~ 1649 (1880)
..+.-.+.++...|+++.|...+.+++...+...+. .........+...+..|+ ..+|...+++.+.-...
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~- 85 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY-----SRIVATSVLGEVLHCKGE---LTRSLALMQQTEQMARQ- 85 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH-----HHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh-----HHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHh-
Confidence 445666778889999999999988877654321000 001234455677788885 57898888876543221
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--------chHHHHHHHHH
Q 000194 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--------WGKAWHSWALF 1721 (1880)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~lg~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--------~~k~w~~wA~~ 1721 (1880)
..+....+.++..+|...... ...++....|..+.+..+. ...++..+|..
T Consensus 86 ---------------~~~~~~~~~~~~~la~~~~~~------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 86 ---------------HDVWHYALWSLIQQSEILFAQ------GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred ---------------cCcHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 112233455556666655443 3568888999998877642 22334444433
Q ss_pred HHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhc
Q 000194 1722 NTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKG 1792 (1880)
Q Consensus 1722 n~~~~~~~~~~~~~~~~~~~~~~ai~~y~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~ 1792 (1880)
..+ .+ -...|...|-+++..... .|..........+-.+.+..|+..+....+.+.
T Consensus 145 ~~~-------~g-------~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 145 LWA-------WA-------RLDEAEASARSGIEVLSS-YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHH-------TT-------CHHHHHHHHHHHHHHTTT-SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH-------hc-------CHHHHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222 11 233566667776665421 111112222333444556667766655555443
No 368
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=21.05 E-value=4.7e+02 Score=25.88 Aligned_cols=83 Identities=11% Similarity=0.200 Sum_probs=48.3
Q ss_pred HHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh----ccchhhHHHHHHhccccc--
Q 000194 927 VSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR----THLPVILPCCIQVLSDAE-- 1000 (1880)
Q Consensus 927 v~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~----~yl~~l~p~ll~~l~~~~-- 1000 (1880)
..++..++ .+.+.|+..+...+.... +.....++-++.+++...+.... +|.+.+.+.+.+.+.+.-
T Consensus 30 T~~a~~~~-~~~~~IV~~~~~~i~k~~------~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~~ 102 (145)
T 3d9j_A 30 TKAAIKAI-KFYKHVVQSVEKFIQKCK------PEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRC 102 (145)
T ss_dssp HHHHHHTG-GGHHHHHHHHHHHHHHSC------GGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhCC------ccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHhC
Confidence 33334444 466788888877766543 23456899999999999988443 455555555554443210
Q ss_pred ccCchhhHHHHHHHHH
Q 000194 1001 RCNDYTYVLDILHTLE 1016 (1880)
Q Consensus 1001 ~~~~~~~~~~il~~l~ 1016 (1880)
....+....+++....
T Consensus 103 ~~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 103 PGDDKSKIVRVLNLWQ 118 (145)
T ss_dssp CGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhc
Confidence 1223444555665554
No 369
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.92 E-value=7.7e+02 Score=26.20 Aligned_cols=89 Identities=10% Similarity=0.006 Sum_probs=58.6
Q ss_pred HHHHHHHhCcccccCchHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHhcCCchhhhHH--hHHHHHHHHHhcCC
Q 000194 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGA 742 (1880)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~l~p~l~~~l~d~~ 742 (1880)
-|.+++...+. -....+..+.+++... ++.+...++..+..++..+|..|...+. .++..+...+.+..
T Consensus 28 eicd~i~~~~~----~~k~a~r~l~krl~~~-----n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~ 98 (220)
T 1dvp_A 28 LICDEINQKDV----TPKNAFAAIKKKMNSP-----NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTP 98 (220)
T ss_dssp HHHHHHHTTSS----CHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCS
T ss_pred HHHHhhcCCCc----CHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCC
Confidence 35566654332 2346677788888864 7888888898999999998876644332 35555555555555
Q ss_pred chhhHHHHHHHHHHHHhhcC
Q 000194 743 AVTKREVAVSTLGQVVQSTG 762 (1880)
Q Consensus 743 ~~~~r~~Al~~Lg~l~~~~~ 762 (1880)
+..+|+.++.-+..-....+
T Consensus 99 ~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 99 HENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 66788877777666665544
No 370
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=20.09 E-value=3.4e+02 Score=27.88 Aligned_cols=114 Identities=8% Similarity=0.079 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHhhccCCHHHHHHH
Q 000194 1476 NGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQAL 1555 (1880)
Q Consensus 1476 ~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~ELeE~i~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~i 1555 (1880)
+..++.|+...++-...|.+.|-..++-++--=.+.|.|......-.+........-+..+.|++||-. .+-++...+
T Consensus 49 ~e~L~~Ai~~a~ri~~~earRRQlqyIGKLmR~~D~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~--~gd~al~e~ 126 (176)
T 2p0t_A 49 TDALRKALAEAPKHTANIARKRHILFIGKLMRDQDQEAILVLLDQLDASTRQYNERFHNLERWRDRLIA--GDDADLEKF 126 (176)
T ss_dssp CHHHHHHHHHGGGCCSHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHh--CCHHHHHHH
Confidence 357888998887765677899998888666543344444332211000000122233456889999864 334555555
Q ss_pred HHHHHhhcCCcccHHHHHHHHHHHHhc---CChhHHHHHHHHHh
Q 000194 1556 LAVRALVLPPTEDVETWLKFASLCRKS---GRISQARSTLVKLL 1596 (1880)
Q Consensus 1556 L~~R~~vl~~~e~~~~~lk~a~laRk~---g~~~~a~~~L~~l~ 1596 (1880)
+. - -|.-|....-+++.-|+|. ++...+.+.|++.+
T Consensus 127 ~~----~-~P~~DrQ~LRqLiR~A~kE~~~~kppka~ReLFqyL 165 (176)
T 2p0t_A 127 VI----E-YPDADRQQLRSLIRQAQHEVARNKPPATSRKIFKYI 165 (176)
T ss_dssp HH----H-STTSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HH----H-CchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 54 2 2555655555555555554 66666666665543
No 371
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=20.01 E-value=1.5e+02 Score=29.64 Aligned_cols=56 Identities=11% Similarity=0.158 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchh
Q 000194 925 TLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPV 987 (1880)
Q Consensus 925 ~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~ 987 (1880)
.+..+...| ..+.+.|+..+.+.+.... +......+-++.+++...|..|..+...
T Consensus 29 ~LT~~a~~~-~~~a~~Iv~~i~~~i~k~~------p~~KL~~LYL~DsIvkN~g~~y~~~F~~ 84 (144)
T 1sz9_A 29 TLTKLAEEN-ISCAQYFVDAIESRIEKCM------PKQKLYAFYALDSICKNVGSPYTIYFSR 84 (144)
T ss_dssp HHHHHHHHT-GGGHHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHTCTTHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhccCC------HhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 344444555 3578889988888877543 2345688999999999998877664333
Done!