BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000196
(1874 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 21/190 (11%)
Query: 1002 CNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTR-LIPRV 1060
C D +LD LD +++++P ++ FK +P IR A+ + + +I R
Sbjct: 156 CEDSAEILD--------SDVLDRPLNIMIPKFLQFFKHSSP-KIRSHAVACVNQFIISRT 206
Query: 1061 Q-VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIXXXXXXXXX 1119
Q + HI S + +L + + E+RK+ AL L + + +I
Sbjct: 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266
Query: 1120 XXXE---FEEIEGRLRRREPLILGSTAAQQLSRRVPVEVISDPLNDVD-----SDPYEDG 1171
E E E L E I + L + +PV V +D+D D ED
Sbjct: 267 DQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDE 326
Query: 1172 T--DAQKQLR 1179
T D+++ +R
Sbjct: 327 TIPDSEQDIR 336
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 645 LLTYLEQSSADN--KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702
+LT + Q D + R+ S LLG L + C + ++P IA L GT +N
Sbjct: 668 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL------GTNLNPEF 721
Query: 703 -GIISGVLVTVGDLARVGGFGMRQYISELMPLIVE---------ALLDGAAVT 745
+ + +G+++ G M+ YI ++ +VE LL+ A+T
Sbjct: 722 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 774
Score = 31.2 bits (69), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Query: 259 GSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVT 318
+L +G + + M+ E+ +++ L + LVR L R AH++ +
Sbjct: 416 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 475
Query: 319 NYLKICMNHILTVL-----RIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAP 373
YLK M +L + R+ S F L E A EL YL I L A +
Sbjct: 476 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT---ELVPYLAYILDTLVFAFSK 532
Query: 374 RRGKPSLEALACVGNIARAMG 394
+ K L +G +A ++G
Sbjct: 533 YQHKNLLILYDAIGTLADSVG 553
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 33.9 bits (76), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 1002 CNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTR-LIPRV 1060
C D +LD LD +++++P ++ FK +P IR A+ + + +I R
Sbjct: 156 CEDSAEILD--------SDVLDRPLNIMIPKFLQFFKHSSP-KIRSHAVACVNQFIISRT 206
Query: 1061 Q-VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095
Q + HI S + +L + + E+RK+ AL L
Sbjct: 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV 317
+L +G + + M+ E+ +++ L + LVR L R AH++ +
Sbjct: 390 ESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 449
Query: 318 TNYLKICMNHILTVL-----RIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIA 372
YLK M +L + R+ S F L E A EL YL I L A +
Sbjct: 450 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT---ELVPYLAYILDTLVFAFS 506
Query: 373 PRRGKPSLEALACVGNIARAMG 394
+ K L +G +A ++G
Sbjct: 507 KYQHKNLLILYDAIGTLADSVG 528
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 645 LLTYLEQSSADN--KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702
+LT + Q D + R+ S LLG L + C + ++P IA L GT +N
Sbjct: 643 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL------GTNLNPEF 696
Query: 703 -GIISGVLVTVGDLARVGGFGMRQYISELMPLIVE---------ALLDGAAVT 745
+ + +G+++ G M+ YI ++ +VE LL+ A+T
Sbjct: 697 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 749
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 33.9 bits (76), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 1002 CNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTR-LIPRV 1060
C D +LD LD +++++P ++ FK +P IR A+ + + +I R
Sbjct: 156 CEDSAEILD--------SDVLDRPLNIMIPKFLQFFKHSSP-KIRSHAVACVNQFIISRT 206
Query: 1061 Q-VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095
Q + HI S + +L + + E+RK+ AL L
Sbjct: 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFV 317
+L +G + + M+ E+ +++ L + LVR L R AH++ +
Sbjct: 377 ESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 436
Query: 318 TNYLKICMNHILTVL-----RIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIA 372
YLK M +L + R+ S F L E A EL YL I L A +
Sbjct: 437 DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT---ELVPYLAYILDTLVFAFS 493
Query: 373 PRRGKPSLEALACVGNIARAMG 394
+ K L +G +A ++G
Sbjct: 494 KYQHKNLLILYDAIGTLADSVG 515
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 645 LLTYLEQSSADN--KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702
+LT + Q D + R+ S LLG L + C + ++P IA L GT +N
Sbjct: 630 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL------GTNLNPEF 683
Query: 703 -GIISGVLVTVGDLARVGGFGMRQYISELMPLIVE---------ALLDGAAVT 745
+ + +G+++ G M+ YI ++ +VE LL+ A+T
Sbjct: 684 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 736
>pdb|3OBK|A Chain A, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In
Complex With The Reaction Product Porphobilinogen
pdb|3OBK|B Chain B, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In
Complex With The Reaction Product Porphobilinogen
pdb|3OBK|C Chain C, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In
Complex With The Reaction Product Porphobilinogen
pdb|3OBK|D Chain D, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In
Complex With The Reaction Product Porphobilinogen
pdb|3OBK|E Chain E, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In
Complex With The Reaction Product Porphobilinogen
pdb|3OBK|F Chain F, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In
Complex With The Reaction Product Porphobilinogen
pdb|3OBK|G Chain G, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In
Complex With The Reaction Product Porphobilinogen
pdb|3OBK|H Chain H, Crystal Structure Of Delta-Aminolevulinic Acid Dehydratase
(Porphobilinogen Synthase) From Toxoplasma Gondii Me49 In
Complex With The Reaction Product Porphobilinogen
Length = 356
Score = 33.9 bits (76), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 1797 NINTWLVVLP-QIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLV 1844
N N V LP Q R + NRAVR+L+Q LV+ P +L+YPL V
Sbjct: 9 NNNYGEVWLPIQARPRRNRKNRAVRQLVQENLVK-----PSSLIYPLFV 52
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 148 DEVEFQVKMALDW--LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIW 200
D VE +V+ L+ RGD V R +A+L L+EM +N T + E+VD IW
Sbjct: 148 DLVEMEVRDLLNQYEFRGDEVRVIRGSALLALEEMHKNRKTKRGEN--EWVDKIW 200
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 30.8 bits (68), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 18/169 (10%)
Query: 610 DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCL 669
D+DF + A+ + L+E + + R I L Y + R+ S LLG L
Sbjct: 637 DKDFXI--VALDLLSGLAEGLGGNIEQLVARSNILTLXYQCXQDKXPEVRQSSFALLGDL 694
Query: 670 IRNCERLIRPYIAPIHKALVARLLEGTGINANN-GIISGVLVTVGDLARVGGFGMRQYIS 728
+ C + ++P IA L GT +N + + +G+++ G + YI
Sbjct: 695 TKACFQHVKPCIADFXPIL------GTNLNPEFISVCNNATWAIGEISIQXGIEXQPYIP 748
Query: 729 ELMPLIVE---------ALLDGAAVTKREVAVSTLGQVVQSTGYVITPY 768
++ +VE LL+ A+T + +V I P+
Sbjct: 749 XVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPXLQQFIRPW 797
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,925,179
Number of Sequences: 62578
Number of extensions: 2016467
Number of successful extensions: 4386
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4368
Number of HSP's gapped (non-prelim): 27
length of query: 1874
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1761
effective length of database: 7,902,023
effective search space: 13915462503
effective search space used: 13915462503
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)