Query 000196
Match_columns 1874
No_of_seqs 495 out of 2426
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 22:57:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0891 DNA-dependent protein 100.0 8E-152 2E-156 1529.8 124.3 1754 24-1872 5-1812(2341)
2 KOG0890 Protein kinase of the 100.0 5E-56 1.1E-60 579.4 77.9 636 1192-1871 1237-1961(2382)
3 COG5032 TEL1 Phosphatidylinosi 100.0 4.2E-53 9.1E-58 595.0 72.3 1507 275-1872 50-1617(2105)
4 KOG0889 Histone acetyltransfer 100.0 7E-39 1.5E-43 429.9 122.0 562 1209-1846 2336-2967(3550)
5 KOG2171 Karyopherin (importin) 100.0 1.4E-42 3.1E-47 431.8 58.1 684 43-787 223-985 (1075)
6 KOG2023 Nuclear transport rece 100.0 1.7E-37 3.6E-42 359.0 40.8 626 21-762 125-820 (885)
7 PF02259 FAT: FAT domain; Int 100.0 8.7E-37 1.9E-41 377.8 30.4 311 1430-1774 1-352 (352)
8 KOG2171 Karyopherin (importin) 100.0 9.5E-29 2.1E-33 308.9 77.8 904 24-1118 4-980 (1075)
9 KOG1241 Karyopherin (importin) 100.0 4.1E-29 9E-34 295.8 62.3 751 52-1106 22-820 (859)
10 KOG2023 Nuclear transport rece 100.0 4.7E-27 1E-31 272.9 36.1 537 508-1116 134-751 (885)
11 COG5215 KAP95 Karyopherin (imp 100.0 7.3E-23 1.6E-27 233.8 59.4 691 52-1037 26-780 (858)
12 KOG0892 Protein kinase ATM/Tel 99.9 3.5E-25 7.6E-30 293.3 39.6 616 1185-1872 1617-2377(2806)
13 KOG1824 TATA-binding protein-i 99.9 1.2E-20 2.6E-25 227.7 68.7 802 151-1115 46-901 (1233)
14 KOG1824 TATA-binding protein-i 99.9 1.7E-19 3.6E-24 217.9 67.5 918 12-1114 116-1114(1233)
15 KOG1241 Karyopherin (importin) 99.9 1.2E-20 2.6E-25 224.6 44.3 584 483-1134 111-753 (859)
16 PF11865 DUF3385: Domain of un 99.9 3.6E-24 7.8E-29 224.1 11.0 160 764-931 1-160 (160)
17 COG5215 KAP95 Karyopherin (imp 99.9 3.6E-18 7.7E-23 195.9 42.9 561 486-1118 118-732 (858)
18 KOG0213 Splicing factor 3b, su 99.7 1.3E-13 2.7E-18 163.1 49.9 557 123-798 488-1102(1172)
19 KOG0213 Splicing factor 3b, su 99.7 6E-13 1.3E-17 157.5 54.2 725 111-1017 400-1142(1172)
20 PLN03200 cellulose synthase-in 99.7 5.9E-12 1.3E-16 172.6 62.9 718 19-928 8-764 (2102)
21 COG5181 HSH155 U2 snRNP splice 99.7 1.7E-12 3.7E-17 150.9 43.2 563 122-801 292-868 (975)
22 KOG0915 Uncharacterized conser 99.7 3.7E-12 8E-17 163.3 48.5 589 70-728 819-1480(1702)
23 PLN03200 cellulose synthase-in 99.6 8.6E-12 1.9E-16 171.0 55.0 784 124-1098 28-861 (2102)
24 COG5181 HSH155 U2 snRNP splice 99.6 1.3E-12 2.9E-17 151.7 39.4 682 125-984 219-922 (975)
25 KOG0915 Uncharacterized conser 99.6 2.2E-10 4.7E-15 147.5 51.8 443 592-1080 993-1452(1702)
26 KOG0212 Uncharacterized conser 99.5 3.1E-12 6.7E-17 148.7 26.9 368 28-407 4-423 (675)
27 KOG1242 Protein containing ada 99.5 9.1E-12 2E-16 149.4 29.1 375 6-409 114-498 (569)
28 KOG1242 Protein containing ada 99.4 1.5E-10 3.4E-15 139.0 30.1 316 22-396 94-449 (569)
29 KOG0212 Uncharacterized conser 99.2 2.8E-07 6.1E-12 108.3 39.7 418 198-785 4-427 (675)
30 PF01602 Adaptin_N: Adaptin N 99.1 1.2E-07 2.6E-12 124.4 40.1 417 47-533 27-485 (526)
31 PTZ00429 beta-adaptin; Provisi 99.1 1.1E-06 2.4E-11 114.0 46.0 444 25-533 33-509 (746)
32 PF01602 Adaptin_N: Adaptin N 99.0 6E-08 1.3E-12 127.2 29.9 438 503-1056 80-522 (526)
33 KOG1992 Nuclear export recepto 99.0 0.00015 3.3E-09 89.8 55.5 681 109-913 5-777 (960)
34 KOG1991 Nuclear transport rece 99.0 0.0004 8.6E-09 88.4 63.4 297 600-951 463-780 (1010)
35 KOG1248 Uncharacterized conser 99.0 0.00051 1.1E-08 89.2 64.4 207 856-1108 696-910 (1176)
36 KOG1248 Uncharacterized conser 99.0 0.00059 1.3E-08 88.6 63.2 775 66-996 90-920 (1176)
37 KOG1943 Beta-tubulin folding c 99.0 0.00046 1E-08 88.4 59.5 202 190-410 337-550 (1133)
38 PTZ00429 beta-adaptin; Provisi 99.0 1.3E-05 2.7E-10 104.5 47.0 472 155-806 35-510 (746)
39 PRK09687 putative lyase; Provi 98.9 2.2E-07 4.8E-12 108.1 25.5 241 569-919 31-273 (280)
40 KOG1943 Beta-tubulin folding c 98.9 0.00068 1.5E-08 87.0 55.9 146 516-686 442-589 (1133)
41 PRK09687 putative lyase; Provi 98.9 2.7E-07 5.8E-12 107.4 24.9 239 482-799 40-278 (280)
42 KOG0166 Karyopherin (importin) 98.9 1.9E-07 4.1E-12 112.5 22.2 360 21-392 63-437 (514)
43 PRK13800 putative oxidoreducta 98.8 1.8E-07 4E-12 127.8 24.7 271 506-924 625-895 (897)
44 KOG0166 Karyopherin (importin) 98.7 9.3E-07 2E-11 106.6 23.0 351 510-930 74-438 (514)
45 KOG1991 Nuclear transport rece 98.7 0.0036 7.9E-08 80.0 57.5 375 23-409 126-591 (1010)
46 KOG0211 Protein phosphatase 2A 98.7 3.1E-05 6.8E-10 99.5 35.4 551 123-802 94-663 (759)
47 KOG2274 Predicted importin 9 [ 98.6 0.009 2E-07 75.6 58.0 199 555-759 485-689 (1005)
48 KOG1020 Sister chromatid cohes 98.5 0.0039 8.6E-08 82.7 47.2 149 146-308 810-958 (1692)
49 PRK13800 putative oxidoreducta 98.5 6.3E-06 1.4E-10 112.9 23.0 255 478-799 634-895 (897)
50 PF10508 Proteasom_PSMB: Prote 98.5 0.00023 5E-09 90.9 35.5 322 74-411 43-386 (503)
51 KOG1992 Nuclear export recepto 98.5 0.014 2.9E-07 73.3 54.5 400 649-1103 370-799 (960)
52 KOG0891 DNA-dependent protein 98.4 0.048 1E-06 78.7 58.4 184 605-802 535-718 (2341)
53 KOG0211 Protein phosphatase 2A 98.3 0.0018 4E-08 83.7 38.6 521 168-802 97-624 (759)
54 KOG1060 Vesicle coat complex A 98.3 0.001 2.2E-08 82.2 32.9 474 74-649 40-549 (968)
55 KOG1060 Vesicle coat complex A 98.3 0.0012 2.6E-08 81.6 33.0 319 558-952 140-516 (968)
56 PF10508 Proteasom_PSMB: Prote 98.2 0.00037 8E-09 89.0 29.0 310 29-350 43-366 (503)
57 KOG2274 Predicted importin 9 [ 98.2 0.05 1.1E-06 69.2 55.3 141 198-354 8-161 (1005)
58 KOG1062 Vesicle coat complex A 98.2 0.012 2.6E-07 73.7 39.3 404 290-801 116-542 (866)
59 PF12755 Vac14_Fab1_bd: Vacuol 98.2 1.3E-05 2.9E-10 76.1 11.2 93 168-266 1-93 (97)
60 TIGR02917 PEP_TPR_lipo putativ 98.2 0.044 9.5E-07 77.5 51.4 499 1290-1869 300-834 (899)
61 PF12460 MMS19_C: RNAPII trans 98.1 0.0017 3.8E-08 81.3 30.7 300 25-330 91-413 (415)
62 KOG0392 SNF2 family DNA-depend 98.1 0.11 2.5E-06 68.2 48.7 230 76-313 84-328 (1549)
63 KOG4535 HEAT and armadillo rep 98.0 0.0076 1.7E-07 70.4 30.0 123 656-782 498-622 (728)
64 TIGR02917 PEP_TPR_lipo putativ 98.0 0.27 5.9E-06 69.4 54.1 61 1569-1642 499-559 (899)
65 KOG1240 Protein kinase contain 98.0 0.00019 4.2E-09 92.2 18.0 220 165-392 435-686 (1431)
66 PF12460 MMS19_C: RNAPII trans 98.0 0.009 2E-07 74.9 33.1 343 60-410 33-413 (415)
67 KOG1059 Vesicle coat complex A 97.9 0.089 1.9E-06 65.3 38.9 231 482-798 126-360 (877)
68 PF12348 CLASP_N: CLASP N term 97.9 0.00013 2.7E-09 83.9 14.9 180 609-802 17-205 (228)
69 COG5064 SRP1 Karyopherin (impo 97.9 0.00052 1.1E-08 76.3 18.1 353 25-392 72-444 (526)
70 PF12348 CLASP_N: CLASP N term 97.9 0.00028 6.1E-09 81.0 17.2 183 163-355 17-211 (228)
71 COG5240 SEC21 Vesicle coat com 97.8 0.16 3.5E-06 61.2 39.2 260 69-354 65-336 (898)
72 KOG1993 Nuclear transport rece 97.8 0.024 5.3E-07 70.7 31.9 232 168-407 412-663 (978)
73 PF12755 Vac14_Fab1_bd: Vacuol 97.8 9.9E-05 2.1E-09 70.2 9.4 88 128-216 3-90 (97)
74 KOG1062 Vesicle coat complex A 97.8 0.029 6.2E-07 70.5 32.6 311 105-444 137-470 (866)
75 KOG1058 Vesicle coat complex C 97.8 0.017 3.7E-07 71.5 29.5 375 291-762 67-466 (948)
76 KOG1020 Sister chromatid cohes 97.8 0.082 1.8E-06 70.9 37.5 132 555-695 811-943 (1692)
77 PF05004 IFRD: Interferon-rela 97.8 0.0032 6.9E-08 74.7 22.9 201 24-226 43-260 (309)
78 KOG1059 Vesicle coat complex A 97.7 0.26 5.7E-06 61.4 38.5 348 274-719 136-492 (877)
79 KOG1993 Nuclear transport rece 97.7 0.009 1.9E-07 74.3 25.8 253 857-1116 526-792 (978)
80 KOG4224 Armadillo repeat prote 97.7 0.00045 9.7E-09 77.6 13.5 406 616-1098 25-447 (550)
81 PF13513 HEAT_EZ: HEAT-like re 97.7 2.8E-05 6.2E-10 66.2 3.2 54 167-220 1-54 (55)
82 KOG1077 Vesicle coat complex A 97.7 0.19 4.2E-06 62.1 35.4 362 25-412 12-454 (938)
83 KOG0392 SNF2 family DNA-depend 97.6 0.56 1.2E-05 62.2 45.4 161 966-1134 796-960 (1549)
84 TIGR00990 3a0801s09 mitochondr 97.6 0.41 8.8E-06 64.1 41.6 81 1363-1449 136-216 (615)
85 KOG1240 Protein kinase contain 97.5 0.0074 1.6E-07 78.4 22.5 297 71-395 424-729 (1431)
86 PRK11447 cellulose synthase su 97.5 0.29 6.3E-06 70.4 41.6 386 1290-1795 274-700 (1157)
87 KOG2022 Nuclear transport rece 97.5 0.046 1E-06 69.4 27.7 159 633-801 458-617 (982)
88 KOG2259 Uncharacterized conser 97.4 0.043 9.2E-07 67.3 25.3 103 115-224 203-311 (823)
89 KOG1967 DNA repair/transcripti 97.4 0.95 2.1E-05 58.4 55.0 151 895-1092 863-1019(1030)
90 TIGR00990 3a0801s09 mitochondr 97.3 1.5 3.3E-05 58.6 43.1 135 1567-1756 363-497 (615)
91 KOG4224 Armadillo repeat prote 97.2 0.014 3E-07 66.0 17.5 194 601-807 87-284 (550)
92 PF05804 KAP: Kinesin-associat 97.2 0.14 3.1E-06 66.6 29.1 415 143-631 210-652 (708)
93 KOG2259 Uncharacterized conser 97.2 0.21 4.5E-06 61.6 27.6 183 158-351 203-440 (823)
94 KOG4535 HEAT and armadillo rep 97.1 0.12 2.7E-06 60.8 24.6 328 17-355 43-467 (728)
95 KOG2032 Uncharacterized conser 97.1 0.25 5.4E-06 59.3 27.4 146 164-315 228-376 (533)
96 KOG2956 CLIP-associating prote 97.1 0.012 2.6E-07 69.5 16.4 196 199-404 291-491 (516)
97 KOG4653 Uncharacterized conser 97.1 0.0077 1.7E-07 75.8 15.7 223 570-802 736-963 (982)
98 PF03378 CAS_CSE1: CAS/CSE pro 97.1 0.07 1.5E-06 66.2 24.2 258 855-1131 24-298 (435)
99 COG5064 SRP1 Karyopherin (impo 97.1 0.003 6.4E-08 70.6 10.6 191 599-802 157-355 (526)
100 KOG1061 Vesicle coat complex A 97.1 0.038 8.3E-07 69.7 21.4 52 479-532 100-151 (734)
101 TIGR02270 conserved hypothetic 97.1 0.084 1.8E-06 65.0 23.8 214 504-808 88-301 (410)
102 PF13513 HEAT_EZ: HEAT-like re 97.0 0.00047 1E-08 58.6 2.9 55 702-757 1-55 (55)
103 KOG4626 O-linked N-acetylgluco 97.0 0.41 8.9E-06 58.6 27.2 153 1569-1780 354-510 (966)
104 COG5240 SEC21 Vesicle coat com 97.0 1.6 3.5E-05 53.1 41.1 164 571-758 388-554 (898)
105 KOG2956 CLIP-associating prote 97.0 0.033 7.1E-07 66.0 17.8 157 142-310 319-477 (516)
106 KOG4653 Uncharacterized conser 96.9 0.08 1.7E-06 67.1 22.0 219 75-307 733-961 (982)
107 KOG1820 Microtubule-associated 96.9 0.024 5.1E-07 74.4 18.2 194 69-273 253-447 (815)
108 PF05804 KAP: Kinesin-associat 96.9 0.047 1E-06 71.0 20.3 366 661-1097 268-649 (708)
109 TIGR02270 conserved hypothetic 96.9 0.059 1.3E-06 66.2 20.2 179 562-802 88-266 (410)
110 PRK11788 tetratricopeptide rep 96.8 0.67 1.5E-05 58.2 30.2 118 1291-1417 41-167 (389)
111 PLN03081 pentatricopeptide (PP 96.8 1.9 4E-05 58.8 36.3 330 1283-1644 187-556 (697)
112 KOG0168 Putative ubiquitin fus 96.8 0.14 3E-06 64.7 22.4 198 562-779 169-377 (1051)
113 PF13646 HEAT_2: HEAT repeats; 96.8 0.0096 2.1E-07 56.5 10.2 87 563-667 2-88 (88)
114 KOG1061 Vesicle coat complex A 96.8 1 2.3E-05 57.3 29.9 197 63-273 115-312 (734)
115 PF05004 IFRD: Interferon-rela 96.7 0.15 3.2E-06 60.7 21.9 219 149-370 40-281 (309)
116 KOG1967 DNA repair/transcripti 96.7 0.022 4.7E-07 72.5 15.2 194 22-217 813-1018(1030)
117 PRK15174 Vi polysaccharide exp 96.7 2 4.4E-05 57.5 34.9 333 1287-1712 44-386 (656)
118 PF13251 DUF4042: Domain of un 96.7 0.022 4.7E-07 61.1 13.1 142 169-310 2-174 (182)
119 COG1413 FOG: HEAT repeat [Ener 96.6 0.07 1.5E-06 65.4 18.9 184 569-802 51-241 (335)
120 PRK11447 cellulose synthase su 96.6 7.8 0.00017 56.0 48.1 194 1567-1797 301-526 (1157)
121 PLN03081 pentatricopeptide (PP 96.5 1.5 3.3E-05 59.6 32.8 477 1270-1832 106-603 (697)
122 PLN03077 Protein ECB2; Provisi 96.5 5.1 0.00011 56.0 38.7 463 1285-1832 288-766 (857)
123 KOG1077 Vesicle coat complex A 96.5 3.7 8E-05 51.6 39.1 351 169-648 90-452 (938)
124 KOG1058 Vesicle coat complex C 96.5 1.1 2.3E-05 56.5 27.1 160 483-673 298-465 (948)
125 PF13646 HEAT_2: HEAT repeats; 96.5 0.01 2.2E-07 56.3 8.2 88 685-799 1-88 (88)
126 KOG1078 Vesicle coat complex C 96.5 4.4 9.4E-05 51.8 33.1 54 43-99 40-94 (865)
127 PLN03218 maturation of RBCL 1; 96.4 4.2 9.2E-05 56.8 35.4 65 1567-1644 717-782 (1060)
128 PF12717 Cnd1: non-SMC mitotic 96.3 0.059 1.3E-06 58.8 13.8 108 515-650 1-111 (178)
129 PF12717 Cnd1: non-SMC mitotic 96.3 0.25 5.3E-06 54.0 18.3 113 124-251 1-113 (178)
130 KOG1820 Microtubule-associated 96.2 0.13 2.8E-06 67.8 18.3 193 109-313 252-446 (815)
131 PF11865 DUF3385: Domain of un 96.2 0.035 7.6E-07 58.9 11.0 153 592-759 3-157 (160)
132 PF02985 HEAT: HEAT repeat; I 96.2 0.0075 1.6E-07 44.1 4.0 29 195-223 1-29 (31)
133 PF03378 CAS_CSE1: CAS/CSE pro 96.1 0.68 1.5E-05 57.7 23.2 229 720-998 17-253 (435)
134 PRK11788 tetratricopeptide rep 96.1 6 0.00013 49.5 33.4 213 1569-1841 107-319 (389)
135 KOG0168 Putative ubiquitin fus 96.1 1.7 3.7E-05 55.6 25.8 208 153-372 168-390 (1051)
136 KOG2025 Chromosome condensatio 96.1 4.2 9E-05 51.3 28.6 183 22-219 3-189 (892)
137 COG1413 FOG: HEAT repeat [Ener 96.0 0.47 1E-05 58.1 21.4 213 505-799 46-269 (335)
138 PRK10049 pgaA outer membrane p 96.0 11 0.00024 51.8 39.5 375 1324-1756 14-423 (765)
139 cd00020 ARM Armadillo/beta-cat 95.9 0.025 5.4E-07 57.2 8.0 100 654-759 19-120 (120)
140 KOG2062 26S proteasome regulat 95.9 0.2 4.4E-06 62.4 16.4 161 191-376 516-679 (929)
141 cd00020 ARM Armadillo/beta-cat 95.8 0.025 5.5E-07 57.2 7.5 112 599-716 7-119 (120)
142 KOG2081 Nuclear transport regu 95.7 7.9 0.00017 48.0 30.2 205 187-406 333-552 (559)
143 KOG4524 Uncharacterized conser 95.7 11 0.00025 49.6 44.2 76 1041-1116 815-900 (1014)
144 PF13251 DUF4042: Domain of un 95.7 0.17 3.7E-06 54.3 13.4 164 615-806 2-177 (182)
145 PRK10747 putative protoheme IX 95.7 3.8 8.2E-05 51.4 27.8 63 1567-1643 326-388 (398)
146 PF04826 Arm_2: Armadillo-like 95.7 0.3 6.4E-06 56.0 16.2 175 153-338 13-190 (254)
147 KOG2022 Nuclear transport rece 95.7 11 0.00024 49.1 47.8 158 251-410 478-639 (982)
148 COG5656 SXM1 Importin, protein 95.6 7.1 0.00015 49.5 28.0 248 855-1115 458-732 (970)
149 KOG2032 Uncharacterized conser 95.6 2.9 6.4E-05 50.6 23.9 146 79-225 227-373 (533)
150 PF04826 Arm_2: Armadillo-like 95.6 0.85 1.8E-05 52.4 19.3 189 562-763 14-209 (254)
151 PRK15174 Vi polysaccharide exp 95.5 5.4 0.00012 53.5 29.7 295 1290-1645 81-381 (656)
152 KOG1078 Vesicle coat complex C 95.5 12 0.00026 48.2 36.8 69 281-354 245-315 (865)
153 PF11864 DUF3384: Domain of un 95.4 12 0.00025 47.9 34.6 72 855-927 248-329 (464)
154 PF12719 Cnd3: Nuclear condens 95.3 0.61 1.3E-05 55.7 18.1 113 558-672 24-144 (298)
155 PF05918 API5: Apoptosis inhib 95.3 4.9 0.00011 50.9 25.8 142 68-226 58-203 (556)
156 KOG0414 Chromosome condensatio 95.2 0.31 6.7E-06 64.4 15.6 110 105-222 914-1026(1251)
157 cd00256 VATPase_H VATPase_H, r 95.2 2.6 5.7E-05 51.9 22.8 290 203-532 110-426 (429)
158 cd00256 VATPase_H VATPase_H, r 95.1 5.2 0.00011 49.4 25.0 326 701-1097 67-425 (429)
159 KOG0547 Translocase of outer m 95.0 12 0.00025 45.6 27.0 320 1363-1757 124-493 (606)
160 PF02985 HEAT: HEAT repeat; I 95.0 0.035 7.5E-07 40.6 3.9 30 600-629 1-30 (31)
161 PF10274 ParcG: Parkin co-regu 95.0 0.23 4.9E-06 52.9 11.3 74 659-737 55-132 (183)
162 COG5096 Vesicle coat complex, 95.0 18 0.0004 47.5 34.8 128 248-392 28-157 (757)
163 TIGR00540 hemY_coli hemY prote 94.8 10 0.00022 47.7 28.0 61 1570-1644 336-398 (409)
164 smart00802 UME Domain in UVSB 94.8 0.15 3.3E-06 49.6 8.7 92 315-408 3-101 (107)
165 COG5096 Vesicle coat complex, 94.7 21 0.00045 47.0 39.9 171 168-367 35-209 (757)
166 PF08167 RIX1: rRNA processing 94.7 0.5 1.1E-05 50.7 13.4 132 599-738 25-164 (165)
167 PF08064 UME: UME (NUC010) dom 94.7 0.16 3.6E-06 49.7 8.8 92 316-409 4-102 (107)
168 PF08167 RIX1: rRNA processing 94.4 0.77 1.7E-05 49.2 13.9 136 65-203 21-164 (165)
169 PF05918 API5: Apoptosis inhib 94.3 5.1 0.00011 50.8 22.7 282 71-374 25-322 (556)
170 PF10274 ParcG: Parkin co-regu 94.1 0.3 6.6E-06 52.0 9.7 132 599-732 38-179 (183)
171 PF12719 Cnd3: Nuclear condens 94.0 6.4 0.00014 47.0 22.4 126 665-801 6-141 (298)
172 COG5116 RPN2 26S proteasome re 93.9 1 2.2E-05 54.5 14.6 155 505-695 519-674 (926)
173 PLN03077 Protein ECB2; Provisi 93.8 42 0.00092 47.0 42.0 95 1766-1867 625-720 (857)
174 KOG2160 Armadillo/beta-catenin 93.8 1.2 2.6E-05 52.1 14.7 156 601-760 126-283 (342)
175 PRK10370 formate-dependent nit 93.8 1.3 2.9E-05 49.2 14.8 137 1536-1711 36-177 (198)
176 KOG2021 Nuclear mRNA export fa 93.7 28 0.0006 44.7 57.0 161 613-782 413-585 (980)
177 KOG0946 ER-Golgi vesicle-tethe 93.7 21 0.00044 46.1 25.4 203 598-800 165-396 (970)
178 PF05536 Neurochondrin: Neuroc 93.4 33 0.00071 44.5 29.9 186 660-892 75-266 (543)
179 KOG2933 Uncharacterized conser 93.4 1 2.3E-05 51.2 12.8 144 243-394 92-237 (334)
180 PF08713 DNA_alkylation: DNA a 93.2 2.3 5E-05 48.1 15.9 150 45-222 33-183 (213)
181 KOG1822 Uncharacterized conser 93.1 59 0.0013 46.5 43.3 242 113-364 879-1141(2067)
182 PF08569 Mo25: Mo25-like; Int 93.0 9.7 0.00021 45.8 21.0 196 111-311 77-284 (335)
183 KOG2076 RNA polymerase III tra 93.0 39 0.00084 44.6 27.0 103 1298-1410 152-260 (895)
184 KOG2933 Uncharacterized conser 92.8 0.64 1.4E-05 52.8 10.1 148 600-761 89-236 (334)
185 KOG0414 Chromosome condensatio 92.8 51 0.0011 44.9 63.4 133 175-313 297-431 (1251)
186 PF12231 Rif1_N: Rap1-interact 92.7 32 0.0007 42.5 28.8 281 82-395 6-307 (372)
187 PF04733 Coatomer_E: Coatomer 92.7 2 4.3E-05 50.8 14.9 174 1245-1454 81-263 (290)
188 PF14500 MMS19_N: Dos2-interac 92.5 13 0.00029 43.0 20.9 233 165-408 11-255 (262)
189 KOG2160 Armadillo/beta-catenin 92.5 15 0.00032 43.4 20.9 183 79-269 93-282 (342)
190 PLN03076 ARF guanine nucleotid 92.3 56 0.0012 48.1 30.4 359 616-996 1109-1511(1780)
191 KOG1822 Uncharacterized conser 92.2 75 0.0016 45.6 62.0 99 700-801 888-986 (2067)
192 COG5116 RPN2 26S proteasome re 92.2 1.8 3.9E-05 52.6 13.2 170 555-756 514-684 (926)
193 KOG1949 Uncharacterized conser 92.2 3.2 6.9E-05 52.0 15.5 181 602-793 177-361 (1005)
194 PF13429 TPR_15: Tetratricopep 92.1 0.65 1.4E-05 55.2 10.2 254 1330-1644 13-276 (280)
195 PLN03076 ARF guanine nucleotid 92.0 51 0.0011 48.5 29.5 129 202-334 1355-1513(1780)
196 PF12530 DUF3730: Protein of u 91.9 11 0.00023 43.3 19.1 196 569-782 9-208 (234)
197 PF14500 MMS19_N: Dos2-interac 91.7 31 0.00067 40.1 23.8 240 74-329 4-256 (262)
198 smart00802 UME Domain in UVSB 91.6 0.72 1.6E-05 44.9 7.8 88 861-950 15-106 (107)
199 KOG2076 RNA polymerase III tra 91.5 9.1 0.0002 50.0 19.2 183 1614-1848 140-330 (895)
200 TIGR02521 type_IV_pilW type IV 91.5 19 0.0004 40.7 21.3 166 1568-1794 30-197 (234)
201 PF08064 UME: UME (NUC010) dom 91.3 2.4 5.2E-05 41.7 11.2 98 273-371 3-105 (107)
202 COG5095 TAF6 Transcription ini 91.3 3.6 7.7E-05 46.2 13.4 168 558-738 199-381 (450)
203 KOG1525 Sister chromatid cohes 90.9 92 0.002 44.1 29.6 100 507-629 305-406 (1266)
204 PF04118 Dopey_N: Dopey, N-ter 90.9 5.2 0.00011 47.3 15.3 119 856-980 53-172 (307)
205 PF05536 Neurochondrin: Neuroc 90.7 64 0.0014 41.9 30.7 244 21-272 2-264 (543)
206 KOG0567 HEAT repeat-containing 90.7 7.1 0.00015 43.8 14.9 186 570-800 78-277 (289)
207 PF08767 CRM1_C: CRM1 C termin 90.7 45 0.00098 40.2 25.8 132 120-251 85-226 (319)
208 PF08767 CRM1_C: CRM1 C termin 90.6 46 0.001 40.1 27.0 169 169-337 43-228 (319)
209 KOG4413 26S proteasome regulat 90.5 38 0.00083 38.9 21.2 282 495-803 75-377 (524)
210 PF08569 Mo25: Mo25-like; Int 90.4 5.1 0.00011 48.1 15.0 197 598-803 75-283 (335)
211 PRK15359 type III secretion sy 90.3 2.9 6.2E-05 43.8 11.6 100 1613-1757 24-123 (144)
212 PRK15359 type III secretion sy 90.1 6.2 0.00013 41.3 13.9 111 1572-1723 27-137 (144)
213 KOG1155 Anaphase-promoting com 90.1 2.2 4.8E-05 51.1 11.2 110 1672-1794 364-494 (559)
214 PF01603 B56: Protein phosphat 90.0 12 0.00026 46.8 18.6 238 69-317 133-377 (409)
215 COG5095 TAF6 Transcription ini 89.8 14 0.00031 41.6 16.3 148 190-349 193-358 (450)
216 PF12231 Rif1_N: Rap1-interact 89.8 60 0.0013 40.1 29.0 220 87-310 64-303 (372)
217 smart00638 LPD_N Lipoprotein N 89.8 4 8.6E-05 54.1 15.1 137 68-219 392-541 (574)
218 TIGR03302 OM_YfiO outer membra 89.7 13 0.00028 42.6 17.8 112 1611-1756 31-145 (235)
219 PF08506 Cse1: Cse1; InterPro 89.6 21 0.00045 43.8 19.6 204 126-336 111-359 (370)
220 PF12895 Apc3: Anaphase-promot 89.5 1.1 2.5E-05 41.8 7.1 81 1367-1451 2-82 (84)
221 cd08050 TAF6 TATA Binding Prot 89.3 5.2 0.00011 48.6 14.2 141 570-715 187-338 (343)
222 TIGR02521 type_IV_pilW type IV 89.3 25 0.00055 39.6 19.8 160 1568-1786 64-223 (234)
223 KOG4626 O-linked N-acetylgluco 89.2 4 8.7E-05 50.4 12.6 211 1528-1794 116-348 (966)
224 KOG2002 TPR-containing nuclear 89.1 96 0.0021 41.5 44.3 67 1744-1814 698-769 (1018)
225 KOG1517 Guanine nucleotide bin 89.0 6.4 0.00014 51.8 14.8 157 70-226 513-674 (1387)
226 PF04118 Dopey_N: Dopey, N-ter 88.6 27 0.00059 41.4 18.8 229 63-305 5-249 (307)
227 PRK10049 pgaA outer membrane p 88.6 1.2E+02 0.0025 41.9 38.3 358 1289-1721 53-436 (765)
228 PF08623 TIP120: TATA-binding 88.5 4.4 9.6E-05 43.0 11.1 93 187-287 2-112 (169)
229 PF08506 Cse1: Cse1; InterPro 88.5 15 0.00033 45.0 17.4 132 114-252 214-359 (370)
230 KOG2549 Transcription initiati 88.4 9.6 0.00021 47.1 15.2 139 654-803 219-370 (576)
231 COG5218 YCG1 Chromosome conden 88.1 27 0.00058 43.3 18.3 109 147-264 86-194 (885)
232 PF11864 DUF3384: Domain of un 87.8 79 0.0017 40.5 24.1 168 44-225 151-329 (464)
233 PF12765 Cohesin_HEAT: HEAT re 87.7 0.79 1.7E-05 36.2 3.8 40 176-217 2-41 (42)
234 COG5656 SXM1 Importin, protein 87.6 1E+02 0.0022 40.0 61.8 290 601-950 462-780 (970)
235 PF11919 DUF3437: Domain of un 87.3 1 2.2E-05 42.3 4.9 55 168-223 4-58 (90)
236 PRK12370 invasion protein regu 87.2 1.1E+02 0.0024 40.2 26.5 193 1584-1839 276-476 (553)
237 PF12688 TPR_5: Tetratrico pep 86.9 3.6 7.9E-05 41.3 9.0 86 1363-1448 10-96 (120)
238 KOG2137 Protein kinase [Signal 86.4 45 0.00097 43.1 19.8 184 936-1131 345-534 (700)
239 PLN03218 maturation of RBCL 1; 86.3 1.7E+02 0.0037 41.4 45.9 160 1286-1454 438-606 (1060)
240 KOG2025 Chromosome condensatio 86.3 8 0.00017 48.9 13.0 109 680-800 82-190 (892)
241 KOG2021 Nuclear mRNA export fa 86.2 1.2E+02 0.0026 39.4 48.1 55 896-950 530-586 (980)
242 PRK15179 Vi polysaccharide bio 86.1 7.6 0.00016 51.7 14.0 154 1247-1414 49-211 (694)
243 PF13429 TPR_15: Tetratricopep 85.8 13 0.00028 44.0 14.9 117 1566-1723 143-259 (280)
244 PF01603 B56: Protein phosphat 85.7 25 0.00054 44.0 17.6 204 598-809 132-376 (409)
245 KOG1155 Anaphase-promoting com 85.5 23 0.00049 43.0 15.6 86 1291-1382 404-494 (559)
246 PF12530 DUF3730: Protein of u 85.5 74 0.0016 36.4 19.9 177 606-799 8-185 (234)
247 PF09295 ChAPs: ChAPs (Chs5p-A 85.4 9.4 0.0002 46.9 13.3 109 1569-1724 172-280 (395)
248 KOG2062 26S proteasome regulat 85.3 1.3E+02 0.0028 39.0 43.7 153 507-695 524-677 (929)
249 KOG1949 Uncharacterized conser 85.2 3.1 6.8E-05 52.0 8.8 106 507-630 225-333 (1005)
250 KOG1126 DNA-binding cell divis 85.1 84 0.0018 40.2 21.0 74 1369-1447 334-407 (638)
251 smart00638 LPD_N Lipoprotein N 84.9 23 0.00049 47.0 17.9 174 154-345 359-540 (574)
252 KOG0889 Histone acetyltransfer 84.8 3E+02 0.0065 42.8 45.3 55 1042-1096 1246-1305(3550)
253 KOG4524 Uncharacterized conser 84.7 1.6E+02 0.0035 39.6 26.8 112 283-394 591-706 (1014)
254 PF01347 Vitellogenin_N: Lipop 84.4 13 0.00028 49.9 15.5 171 154-345 397-584 (618)
255 KOG4413 26S proteasome regulat 84.2 87 0.0019 36.2 29.4 200 166-377 53-270 (524)
256 COG5098 Chromosome condensatio 84.0 1.4E+02 0.003 38.3 27.9 103 701-808 312-420 (1128)
257 KOG1851 Uncharacterized conser 84.0 34 0.00075 47.7 18.2 140 161-309 1535-1677(1710)
258 PLN03088 SGT1, suppressor of 84.0 15 0.00032 45.2 14.4 114 1571-1725 4-117 (356)
259 PF10521 DUF2454: Protein of u 84.0 13 0.00029 43.8 13.5 142 599-741 119-277 (282)
260 KOG1125 TPR repeat-containing 83.8 56 0.0012 41.1 18.4 81 1551-1644 301-381 (579)
261 PF10521 DUF2454: Protein of u 83.5 22 0.00047 42.1 15.0 147 145-292 112-276 (282)
262 cd08050 TAF6 TATA Binding Prot 83.5 26 0.00057 42.5 16.0 151 602-756 181-337 (343)
263 PF13414 TPR_11: TPR repeat; P 83.2 5.1 0.00011 35.5 7.5 66 1567-1644 1-66 (69)
264 PF11707 Npa1: Ribosome 60S bi 83.1 1E+02 0.0022 37.5 20.8 81 600-685 205-313 (330)
265 PF13414 TPR_11: TPR repeat; P 83.0 6.8 0.00015 34.7 8.2 50 1693-1755 18-67 (69)
266 KOG0567 HEAT repeat-containing 82.8 77 0.0017 36.0 17.2 97 599-720 187-283 (289)
267 PRK10747 putative protoheme IX 82.6 1.4E+02 0.0031 37.4 29.5 130 1567-1755 261-390 (398)
268 KOG3678 SARM protein (with ste 82.5 43 0.00094 40.2 16.1 58 123-183 276-337 (832)
269 PF14559 TPR_19: Tetratricopep 82.4 2.8 6.1E-05 37.1 5.5 49 1366-1417 3-51 (68)
270 KOG1517 Guanine nucleotide bin 81.7 22 0.00048 47.2 14.5 157 600-761 513-673 (1387)
271 PF12895 Apc3: Anaphase-promot 81.5 2.7 5.9E-05 39.2 5.3 77 1299-1379 3-83 (84)
272 cd03561 VHS VHS domain family; 81.4 15 0.00033 37.8 11.1 101 570-675 13-116 (133)
273 KOG0495 HAT repeat protein [RN 81.0 1.8E+02 0.0038 37.4 22.0 33 1569-1601 584-616 (913)
274 KOG1173 Anaphase-promoting com 80.9 1.7E+02 0.0036 37.1 22.5 120 1563-1723 238-357 (611)
275 PF13428 TPR_14: Tetratricopep 80.9 4.3 9.3E-05 32.4 5.4 41 1674-1720 3-43 (44)
276 COG5098 Chromosome condensatio 80.9 4.3 9.2E-05 50.7 7.7 91 1024-1116 929-1019(1128)
277 TIGR02552 LcrH_SycD type III s 80.9 32 0.0007 35.2 13.7 108 1567-1715 15-122 (135)
278 PF13001 Ecm29: Proteasome sta 80.8 21 0.00046 46.0 14.5 141 573-721 295-447 (501)
279 PRK09782 bacteriophage N4 rece 80.1 2.8E+02 0.006 39.1 47.1 141 1299-1455 122-275 (987)
280 PF01347 Vitellogenin_N: Lipop 80.1 47 0.001 44.5 18.4 101 982-1093 481-585 (618)
281 KOG2137 Protein kinase [Signal 80.1 1.4E+02 0.003 38.9 20.5 225 88-333 271-518 (700)
282 KOG0553 TPR repeat-containing 79.5 21 0.00045 41.2 11.9 100 1579-1719 91-190 (304)
283 KOG1851 Uncharacterized conser 79.3 3.1E+02 0.0067 39.2 35.6 154 557-719 1523-1680(1710)
284 PF05843 Suf: Suppressor of fo 79.0 20 0.00043 42.4 12.6 113 1571-1723 3-118 (280)
285 PF13001 Ecm29: Proteasome sta 78.9 27 0.00058 45.1 14.6 198 595-801 268-486 (501)
286 PF03224 V-ATPase_H_N: V-ATPas 78.8 1.6E+02 0.0034 35.5 21.1 71 111-183 107-180 (312)
287 KOG0803 Predicted E3 ubiquitin 78.8 2.2E+02 0.0047 40.7 23.4 194 22-228 39-268 (1312)
288 cd06561 AlkD_like A new struct 78.6 64 0.0014 35.7 16.1 118 85-223 52-170 (197)
289 KOG1126 DNA-binding cell divis 78.3 13 0.00028 47.2 10.7 196 1571-1792 355-583 (638)
290 TIGR02552 LcrH_SycD type III s 78.1 13 0.00029 38.1 9.8 90 1290-1385 22-116 (135)
291 PRK12370 invasion protein regu 78.1 2.4E+02 0.0051 37.2 28.1 205 1581-1850 316-523 (553)
292 PF10363 DUF2435: Protein of u 78.0 23 0.0005 33.7 10.1 84 643-741 6-89 (92)
293 TIGR02795 tol_pal_ybgF tol-pal 77.5 37 0.0008 33.6 12.6 110 1569-1713 2-111 (119)
294 KOG2549 Transcription initiati 77.4 1.2E+02 0.0026 38.1 18.2 148 71-223 209-370 (576)
295 KOG1293 Proteins containing ar 76.5 2.4E+02 0.0052 36.4 22.5 164 114-287 380-554 (678)
296 cd03569 VHS_Hrs_Vps27p VHS dom 76.3 41 0.0009 35.0 12.4 111 558-674 5-117 (142)
297 KOG1915 Cell cycle control pro 76.2 1.9E+02 0.0041 35.6 18.8 255 1493-1812 128-418 (677)
298 PRK11189 lipoprotein NlpI; Pro 75.5 1.8E+02 0.004 34.6 23.4 164 1584-1807 41-206 (296)
299 cd00189 TPR Tetratricopeptide 75.5 26 0.00056 32.2 10.4 61 1571-1644 2-62 (100)
300 PF12397 U3snoRNP10: U3 small 74.6 25 0.00055 35.5 10.2 103 1023-1132 1-104 (121)
301 PRK15179 Vi polysaccharide bio 74.5 76 0.0017 42.5 17.3 116 1567-1723 84-199 (694)
302 TIGR02795 tol_pal_ybgF tol-pal 74.1 15 0.00033 36.4 8.7 92 1362-1453 10-102 (119)
303 KOG2149 Uncharacterized conser 74.0 40 0.00086 40.6 12.8 132 601-739 60-192 (393)
304 PF03224 V-ATPase_H_N: V-ATPas 73.9 38 0.00081 40.8 13.3 180 611-798 69-264 (312)
305 PF14938 SNAP: Soluble NSF att 73.6 1.1E+02 0.0024 36.1 17.1 192 1569-1797 35-227 (282)
306 PF14222 MOR2-PAG1_N: Cell mor 73.6 93 0.002 40.5 17.3 200 18-222 29-248 (552)
307 KOG2842 Interferon-related pro 73.4 2.1E+02 0.0046 34.4 20.7 213 12-227 45-277 (427)
308 COG5032 TEL1 Phosphatidylinosi 73.4 2.9E+02 0.0064 42.4 24.5 78 1327-1406 1125-1207(2105)
309 cd03568 VHS_STAM VHS domain fa 73.2 38 0.00082 35.3 11.2 98 571-674 14-113 (144)
310 PF14664 RICTOR_N: Rapamycin-i 73.2 94 0.002 38.2 16.4 228 71-309 27-268 (371)
311 PRK11189 lipoprotein NlpI; Pro 72.8 1.6E+02 0.0034 35.2 18.3 124 1632-1799 42-165 (296)
312 PF13176 TPR_7: Tetratricopept 72.8 4 8.7E-05 30.9 3.0 21 1361-1381 6-26 (36)
313 KOG1243 Protein kinase [Genera 72.6 12 0.00025 47.9 8.5 187 25-226 331-518 (690)
314 KOG0495 HAT repeat protein [RN 72.6 1E+02 0.0022 39.3 16.0 187 1547-1799 598-786 (913)
315 smart00288 VHS Domain present 72.0 40 0.00087 34.7 11.0 100 570-674 13-114 (133)
316 PF13432 TPR_16: Tetratricopep 71.5 9.1 0.0002 33.4 5.5 50 1363-1415 6-55 (65)
317 KOG0803 Predicted E3 ubiquitin 71.1 1.5E+02 0.0032 42.2 19.0 220 111-334 43-287 (1312)
318 PF08389 Xpo1: Exportin 1-like 71.0 18 0.00038 37.9 8.6 65 1026-1092 80-148 (148)
319 cd07064 AlkD_like_1 A new stru 70.9 1.4E+02 0.003 33.5 15.9 131 71-223 48-179 (208)
320 PF14664 RICTOR_N: Rapamycin-i 70.7 2.5E+02 0.0054 34.6 19.3 233 558-806 23-272 (371)
321 PF13431 TPR_17: Tetratricopep 70.7 5.4 0.00012 29.9 3.2 25 1700-1724 1-25 (34)
322 PLN03088 SGT1, suppressor of 70.6 27 0.00058 43.0 11.1 107 1290-1405 7-118 (356)
323 PF12569 NARP1: NMDA receptor- 70.1 47 0.001 42.7 13.4 201 1617-1872 8-228 (517)
324 KOG2149 Uncharacterized conser 70.1 29 0.00063 41.7 10.5 114 643-764 61-175 (393)
325 TIGR03302 OM_YfiO outer membra 70.0 2E+02 0.0044 32.7 19.4 122 1568-1718 32-155 (235)
326 KOG3961 Uncharacterized conser 69.6 11 0.00024 40.6 6.2 76 875-950 131-209 (262)
327 cd05804 StaR_like StaR_like; a 69.5 1.8E+02 0.004 35.5 18.6 155 1290-1453 119-290 (355)
328 KOG2002 TPR-containing nuclear 69.4 4.1E+02 0.009 36.0 31.6 311 1250-1643 400-743 (1018)
329 KOG4500 Rho/Rac GTPase guanine 69.0 2.7E+02 0.006 33.9 20.2 179 114-299 227-420 (604)
330 PF10602 RPN7: 26S proteasome 68.9 48 0.001 36.0 11.4 88 1362-1449 44-135 (177)
331 PF10363 DUF2435: Protein of u 68.8 42 0.0009 32.0 9.4 74 240-315 4-77 (92)
332 KOG0413 Uncharacterized conser 68.4 3.6E+02 0.0078 36.3 19.8 258 127-403 947-1270(1529)
333 PRK14574 hmsH outer membrane p 68.2 4.6E+02 0.01 36.2 37.6 124 1569-1723 367-495 (822)
334 PF04733 Coatomer_E: Coatomer 68.2 1.4E+02 0.003 35.5 16.0 113 1567-1718 129-241 (290)
335 KOG1129 TPR repeat-containing 67.8 34 0.00074 39.5 9.9 90 1290-1386 228-322 (478)
336 PF00790 VHS: VHS domain; Int 67.1 51 0.0011 34.2 10.8 111 558-673 6-120 (140)
337 KOG3961 Uncharacterized conser 67.0 22 0.00047 38.5 7.7 121 600-722 115-244 (262)
338 PRK02603 photosystem I assembl 66.4 1.1E+02 0.0023 33.2 13.7 116 1613-1756 35-150 (172)
339 PF11698 V-ATPase_H_C: V-ATPas 66.3 13 0.00027 37.0 5.6 72 728-801 42-113 (119)
340 KOG4500 Rho/Rac GTPase guanine 66.2 2.3E+02 0.005 34.5 16.3 145 651-800 325-472 (604)
341 KOG1525 Sister chromatid cohes 66.2 5.8E+02 0.013 36.6 42.3 260 110-385 45-323 (1266)
342 cd03567 VHS_GGA VHS domain fam 65.6 91 0.002 32.3 11.9 100 570-674 14-119 (139)
343 PRK10370 formate-dependent nit 65.5 1.8E+02 0.004 32.2 15.5 130 1691-1858 52-185 (198)
344 PF09976 TPR_21: Tetratricopep 65.4 1.1E+02 0.0024 31.8 13.2 82 1364-1448 58-139 (145)
345 PRK14720 transcript cleavage f 65.2 4.8E+02 0.01 36.0 21.4 69 1533-1601 187-255 (906)
346 PRK14720 transcript cleavage f 65.1 3.1E+02 0.0066 37.8 19.6 147 1567-1750 29-180 (906)
347 PF12074 DUF3554: Domain of un 64.9 3.3E+02 0.0071 33.2 21.0 69 152-223 22-90 (339)
348 PF12054 DUF3535: Domain of un 64.4 3.9E+02 0.0084 33.9 24.7 79 125-207 101-181 (441)
349 PRK15363 pathogenicity island 64.2 1.2E+02 0.0026 32.0 12.4 99 1613-1756 35-133 (157)
350 PF13432 TPR_16: Tetratricopep 63.8 30 0.00065 30.1 7.2 59 1574-1645 2-60 (65)
351 TIGR00540 hemY_coli hemY prote 63.3 3.9E+02 0.0085 33.6 29.3 120 1567-1724 261-382 (409)
352 PF00514 Arm: Armadillo/beta-c 62.4 12 0.00027 29.2 3.9 29 194-222 12-40 (41)
353 PF12569 NARP1: NMDA receptor- 62.0 4.6E+02 0.01 33.9 27.7 151 1568-1751 227-387 (517)
354 PF14938 SNAP: Soluble NSF att 61.1 2E+02 0.0042 34.1 15.7 117 1326-1452 95-221 (282)
355 PF09295 ChAPs: ChAPs (Chs5p-A 61.0 1E+02 0.0022 38.1 13.3 112 1292-1415 176-292 (395)
356 KOG2041 WD40 repeat protein [G 61.0 27 0.00057 44.1 8.1 79 1329-1418 764-849 (1189)
357 KOG4199 Uncharacterized conser 60.5 3.4E+02 0.0075 32.0 21.5 293 570-919 116-435 (461)
358 PF14631 FancD2: Fanconi anaem 59.5 83 0.0018 45.7 13.8 153 185-348 426-579 (1426)
359 PF12765 Cohesin_HEAT: HEAT re 58.7 11 0.00024 29.8 3.0 27 597-623 16-42 (42)
360 KOG1293 Proteins containing ar 58.4 5.3E+02 0.011 33.5 35.1 112 560-673 419-535 (678)
361 KOG1243 Protein kinase [Genera 58.2 84 0.0018 40.6 12.0 107 984-1095 327-435 (690)
362 KOG1988 Uncharacterized conser 57.6 4.2E+02 0.0091 35.4 17.8 214 558-801 61-279 (970)
363 PRK15363 pathogenicity island 57.6 79 0.0017 33.3 9.8 82 1692-1793 49-130 (157)
364 PRK10803 tol-pal system protei 57.0 1.6E+02 0.0035 34.4 13.5 109 1569-1712 142-251 (263)
365 PF08623 TIP120: TATA-binding 57.0 44 0.00094 35.7 8.0 80 609-693 37-116 (169)
366 COG4783 Putative Zn-dependent 56.4 1.8E+02 0.0038 36.2 13.7 68 1567-1647 338-405 (484)
367 PF14559 TPR_19: Tetratricopep 56.2 16 0.00036 32.1 4.2 52 1580-1644 2-53 (68)
368 PF12333 Ipi1_N: Rix1 complex 55.5 30 0.00065 33.7 6.1 63 631-695 2-65 (102)
369 PF12830 Nipped-B_C: Sister ch 55.5 67 0.0015 35.3 9.7 67 570-638 17-84 (187)
370 PF13424 TPR_12: Tetratricopep 55.4 25 0.00054 32.0 5.4 53 1363-1415 14-70 (78)
371 CHL00033 ycf3 photosystem I as 54.8 1.3E+02 0.0029 32.2 11.9 113 1569-1712 35-154 (168)
372 KOG3060 Uncharacterized conser 54.7 2.8E+02 0.0061 31.6 13.7 132 1582-1729 99-242 (289)
373 KOG2005 26S proteasome regulat 54.6 2.9E+02 0.0064 35.5 15.3 64 730-803 641-704 (878)
374 PF13371 TPR_9: Tetratricopept 54.1 34 0.00074 30.5 6.1 51 1363-1416 4-54 (73)
375 PF06552 TOM20_plant: Plant sp 53.5 49 0.0011 35.5 7.5 73 1694-1773 51-123 (186)
376 PF09976 TPR_21: Tetratricopep 53.5 1.2E+02 0.0026 31.6 10.9 63 1569-1641 48-110 (145)
377 PF13174 TPR_6: Tetratricopept 53.1 16 0.00034 26.6 3.0 26 1361-1386 7-32 (33)
378 PF12333 Ipi1_N: Rix1 complex 52.9 54 0.0012 32.0 7.4 63 273-335 3-65 (102)
379 PF14668 RICTOR_V: Rapamycin-i 52.6 19 0.00041 32.4 3.8 55 746-802 3-57 (73)
380 PF07719 TPR_2: Tetratricopept 52.3 30 0.00065 25.3 4.4 34 1672-1711 1-34 (34)
381 KOG2396 HAT (Half-A-TPR) repea 52.1 1.4E+02 0.003 37.2 11.8 79 1540-1628 75-154 (568)
382 PF07719 TPR_2: Tetratricopept 52.1 20 0.00043 26.3 3.4 25 1361-1385 8-32 (34)
383 cd03565 VHS_Tom1 VHS domain fa 52.0 1.8E+02 0.0038 30.3 11.4 100 570-674 14-118 (141)
384 PF13371 TPR_9: Tetratricopept 51.7 44 0.00096 29.8 6.4 57 1576-1645 2-58 (73)
385 cd00189 TPR Tetratricopeptide 51.5 91 0.002 28.3 9.1 82 1364-1450 10-91 (100)
386 PF10350 DUF2428: Putative dea 51.5 4.5E+02 0.0097 30.6 16.2 164 126-291 62-250 (255)
387 COG5218 YCG1 Chromosome conden 51.0 6.4E+02 0.014 32.2 51.1 182 22-218 9-194 (885)
388 PF00515 TPR_1: Tetratricopept 50.6 31 0.00067 25.4 4.3 33 1672-1710 1-33 (34)
389 PF00515 TPR_1: Tetratricopept 50.4 21 0.00046 26.3 3.3 25 1361-1385 8-32 (34)
390 PF08161 NUC173: NUC173 domain 50.0 2.3E+02 0.0049 31.5 12.5 59 875-933 17-75 (198)
391 PF12783 Sec7_N: Guanine nucle 49.5 70 0.0015 34.5 8.5 99 657-760 37-147 (168)
392 PF12688 TPR_5: Tetratrico pep 49.5 1.6E+02 0.0035 29.6 10.3 81 1331-1412 7-96 (120)
393 PRK02603 photosystem I assembl 48.6 2.8E+02 0.006 29.9 13.2 139 1548-1712 14-154 (172)
394 PF07571 DUF1546: Protein of u 48.4 66 0.0014 30.6 7.0 60 654-716 18-77 (92)
395 KOG1173 Anaphase-promoting com 47.3 2.1E+02 0.0046 36.2 12.6 127 1582-1756 393-519 (611)
396 PF00514 Arm: Armadillo/beta-c 47.1 32 0.0007 26.8 4.0 29 599-627 12-40 (41)
397 PF07571 DUF1546: Protein of u 46.6 63 0.0014 30.8 6.6 59 742-802 18-77 (92)
398 PF12830 Nipped-B_C: Sister ch 46.5 4E+02 0.0087 29.3 13.9 70 600-678 9-81 (187)
399 COG3071 HemY Uncharacterized e 45.9 6.4E+02 0.014 30.8 23.1 213 1364-1601 128-360 (400)
400 PF13525 YfiO: Outer membrane 45.8 3.7E+02 0.008 29.9 13.9 179 1566-1783 2-195 (203)
401 PF04388 Hamartin: Hamartin pr 45.7 76 0.0016 42.4 9.5 79 656-738 82-161 (668)
402 COG4235 Cytochrome c biogenesi 45.5 4.1E+02 0.0088 31.2 13.9 83 1551-1643 138-220 (287)
403 PF08389 Xpo1: Exportin 1-like 45.5 3E+02 0.0065 28.4 12.6 69 275-345 76-148 (148)
404 KOG1222 Kinesin associated pro 45.4 6.9E+02 0.015 31.0 27.0 87 282-371 346-435 (791)
405 PF11841 DUF3361: Domain of un 45.3 1.8E+02 0.0039 30.8 10.0 97 125-222 31-130 (160)
406 PRK09782 bacteriophage N4 rece 45.1 1.1E+03 0.024 33.3 36.0 111 1569-1720 609-719 (987)
407 PF03542 Tuberin: Tuberin; In 44.7 4.7E+02 0.01 31.9 15.1 148 856-1019 140-302 (356)
408 KOG3723 PH domain protein Melt 43.8 7.8E+02 0.017 31.1 16.6 69 172-252 181-249 (851)
409 KOG1125 TPR repeat-containing 43.6 1.1E+02 0.0023 38.7 9.4 123 1693-1835 300-425 (579)
410 KOG1586 Protein required for f 43.6 3.5E+02 0.0076 30.4 12.1 126 1567-1721 32-163 (288)
411 KOG0890 Protein kinase of the 43.1 4.1E+02 0.009 39.8 16.0 188 615-809 896-1119(2382)
412 cd03572 ENTH_epsin_related ENT 43.1 98 0.0021 31.2 7.5 63 263-327 21-83 (122)
413 KOG2759 Vacuolar H+-ATPase V1 42.3 7.4E+02 0.016 30.5 26.2 53 479-531 381-438 (442)
414 KOG0553 TPR repeat-containing 41.7 1.7E+02 0.0038 34.0 10.1 82 1669-1781 119-200 (304)
415 PF04388 Hamartin: Hamartin pr 41.7 2.3E+02 0.0049 38.0 12.9 91 600-693 71-162 (668)
416 PF13428 TPR_14: Tetratricopep 41.3 56 0.0012 25.9 4.7 32 1570-1601 2-33 (44)
417 smart00299 CLH Clathrin heavy 40.9 1E+02 0.0022 31.9 8.0 88 1285-1379 7-94 (140)
418 KOG0547 Translocase of outer m 40.6 5E+02 0.011 32.4 14.0 154 1567-1775 426-579 (606)
419 KOG2122 Beta-catenin-binding p 40.4 1.4E+03 0.03 33.1 20.6 43 290-334 447-492 (2195)
420 PF12074 DUF3554: Domain of un 40.1 5.8E+02 0.013 31.1 15.6 183 19-207 56-257 (339)
421 KOG1087 Cytosolic sorting prot 40.0 2.1E+02 0.0046 36.1 11.4 105 564-673 8-114 (470)
422 PF11698 V-ATPase_H_C: V-ATPas 39.8 80 0.0017 31.5 6.2 68 154-222 45-114 (119)
423 PF03542 Tuberin: Tuberin; In 39.1 5.1E+02 0.011 31.6 14.2 93 295-391 211-303 (356)
424 cd03568 VHS_STAM VHS domain fa 39.0 4.1E+02 0.0089 27.8 11.8 77 682-763 36-114 (144)
425 PF08631 SPO22: Meiosis protei 38.9 7.1E+02 0.015 29.3 19.2 118 1578-1710 2-119 (278)
426 PF00790 VHS: VHS domain; Int 38.5 4.7E+02 0.01 27.1 13.8 91 664-763 27-122 (140)
427 cd03572 ENTH_epsin_related ENT 38.2 1.1E+02 0.0023 30.9 6.9 43 599-641 38-80 (122)
428 KOG1174 Anaphase-promoting com 38.1 1.6E+02 0.0034 35.6 9.2 74 1614-1719 439-512 (564)
429 KOG1127 TPR repeat-containing 36.9 1.2E+03 0.027 32.0 17.5 32 1693-1724 52-83 (1238)
430 PF09477 Type_III_YscG: Bacter 36.9 1.8E+02 0.004 28.3 7.7 54 1395-1455 44-97 (116)
431 PF04781 DUF627: Protein of un 36.3 1E+02 0.0022 30.3 6.3 84 1619-1719 2-85 (111)
432 PF13181 TPR_8: Tetratricopept 35.9 44 0.00096 24.5 3.1 24 1361-1384 8-31 (34)
433 KOG3036 Protein involved in ce 35.8 3.7E+02 0.008 30.4 10.9 103 699-802 136-246 (293)
434 cd03561 VHS VHS domain family; 35.2 2.1E+02 0.0046 29.4 9.0 73 282-354 38-116 (133)
435 PF09324 DUF1981: Domain of un 35.0 97 0.0021 29.1 5.8 65 1029-1093 18-84 (86)
436 PF04078 Rcd1: Cell differenti 34.8 2.4E+02 0.0051 32.5 9.7 101 701-802 109-217 (262)
437 PF11919 DUF3437: Domain of un 34.7 48 0.001 31.3 3.7 53 255-308 4-56 (90)
438 PF12054 DUF3535: Domain of un 34.5 1.1E+03 0.023 30.0 20.2 56 168-226 102-158 (441)
439 COG5657 CSE1 CAS/CSE protein i 34.4 1.4E+03 0.03 31.3 44.2 121 613-739 507-627 (947)
440 PF14868 DUF4487: Domain of un 34.3 1.2E+03 0.025 30.6 16.9 204 21-229 337-558 (559)
441 KOG2973 Uncharacterized conser 34.2 1.7E+02 0.0038 34.0 8.5 107 601-717 5-111 (353)
442 COG3063 PilF Tfp pilus assembl 33.7 7.1E+02 0.015 28.2 12.7 116 1567-1721 67-182 (250)
443 CHL00033 ycf3 photosystem I as 33.0 6.3E+02 0.014 26.9 14.5 113 1616-1756 38-150 (168)
444 PF13181 TPR_8: Tetratricopept 32.8 86 0.0019 22.9 4.2 32 1673-1710 2-33 (34)
445 PF11701 UNC45-central: Myosin 32.5 3.1E+02 0.0067 29.1 9.9 122 205-336 16-141 (157)
446 KOG0276 Vesicle coat complex C 31.6 2.8E+02 0.0061 35.3 10.3 170 1339-1544 600-778 (794)
447 COG5537 IRR1 Cohesin [Cell div 31.6 9.6E+02 0.021 30.9 14.6 113 556-670 270-385 (740)
448 KOG0548 Molecular co-chaperone 31.5 2.1E+02 0.0046 35.9 9.3 52 1340-1404 422-473 (539)
449 KOG0550 Molecular chaperone (D 31.4 1.8E+02 0.004 35.2 8.4 91 1569-1683 249-339 (486)
450 KOG3723 PH domain protein Melt 31.3 1.2E+03 0.026 29.6 16.9 87 965-1059 181-267 (851)
451 KOG2005 26S proteasome regulat 30.9 9.1E+02 0.02 31.5 14.4 62 73-140 456-518 (878)
452 PLN02789 farnesyltranstransfer 30.7 1E+03 0.022 28.7 23.4 135 1569-1756 37-172 (320)
453 KOG2085 Serine/threonine prote 30.6 3.6E+02 0.0079 32.8 10.6 90 938-1037 297-389 (457)
454 PF10350 DUF2428: Putative dea 30.5 8.6E+02 0.019 28.2 14.0 144 106-251 92-252 (255)
455 cd05804 StaR_like StaR_like; a 30.4 1E+03 0.023 28.7 26.1 105 1536-1644 231-335 (355)
456 PF10373 EST1_DNA_bind: Est1 D 30.4 2.8E+02 0.0061 32.5 10.5 44 1698-1755 2-45 (278)
457 COG2956 Predicted N-acetylgluc 30.3 1E+03 0.022 28.4 14.4 179 1324-1516 65-273 (389)
458 PF12397 U3snoRNP10: U3 small 30.3 2.1E+02 0.0046 28.8 7.9 71 725-802 2-73 (121)
459 KOG0543 FKBP-type peptidyl-pro 30.2 2.8E+02 0.0061 33.8 9.8 60 1670-1756 262-321 (397)
460 PF04510 DUF577: Family of unk 29.0 68 0.0015 34.1 4.0 88 323-410 3-91 (174)
461 COG4700 Uncharacterized protei 28.9 7.8E+02 0.017 26.8 13.2 124 1567-1726 122-245 (251)
462 COG4783 Putative Zn-dependent 28.7 4E+02 0.0087 33.3 10.9 109 1576-1725 313-421 (484)
463 smart00386 HAT HAT (Half-A-TPR 28.6 1.1E+02 0.0023 21.8 4.1 28 1694-1721 3-30 (33)
464 PRK05255 hypothetical protein; 28.4 6.6E+02 0.014 27.1 11.2 114 1476-1596 50-166 (171)
465 PF08146 BP28CT: BP28CT (NUC21 28.4 3.4E+02 0.0075 28.7 9.3 75 149-223 56-147 (153)
466 smart00185 ARM Armadillo/beta- 28.1 78 0.0017 24.3 3.5 27 195-221 13-39 (41)
467 cd00197 VHS_ENTH_ANTH VHS, ENT 28.1 2.9E+02 0.0063 27.4 8.5 71 598-668 36-112 (115)
468 smart00288 VHS Domain present 28.0 6.7E+02 0.015 25.7 11.2 77 682-763 36-115 (133)
469 PF14961 BROMI: Broad-minded p 27.9 1.1E+03 0.024 33.3 15.5 74 1030-1103 163-237 (1296)
470 PF14222 MOR2-PAG1_N: Cell mor 27.7 1.5E+03 0.033 29.7 27.6 155 254-412 145-320 (552)
471 COG4235 Cytochrome c biogenesi 27.7 6.3E+02 0.014 29.7 11.8 102 1694-1812 172-274 (287)
472 PRK15180 Vi polysaccharide bio 27.4 74 0.0016 38.6 4.4 79 1362-1445 331-409 (831)
473 PF10193 Telomere_reg-2: Telom 27.2 5.1E+02 0.011 25.8 9.7 103 643-756 6-112 (114)
474 PF11701 UNC45-central: Myosin 26.9 3.2E+02 0.0069 29.0 8.9 95 124-222 18-116 (157)
475 PF00637 Clathrin: Region in C 26.8 32 0.00069 35.8 1.4 111 1289-1416 11-121 (143)
476 KOG2199 Signal transducing ada 26.3 4.2E+02 0.009 32.0 10.0 58 572-634 23-80 (462)
477 PF14225 MOR2-PAG1_C: Cell mor 26.1 1.1E+03 0.024 27.5 17.4 75 1023-1101 183-258 (262)
478 KOG1070 rRNA processing protei 26.1 2.2E+03 0.048 31.1 21.5 191 1564-1811 1454-1647(1710)
479 KOG0543 FKBP-type peptidyl-pro 26.1 3.8E+02 0.0082 32.8 9.9 21 1292-1312 222-242 (397)
480 PF09324 DUF1981: Domain of un 25.9 2.8E+02 0.0062 26.0 7.3 66 641-712 18-83 (86)
481 PF02184 HAT: HAT (Half-A-TPR) 25.8 1.1E+02 0.0025 22.7 3.4 26 1695-1721 4-29 (32)
482 PF04751 DUF615: Protein of un 25.8 3.8E+02 0.0081 28.5 8.9 113 1477-1596 40-155 (157)
483 KOG4199 Uncharacterized conser 25.6 1.2E+03 0.026 27.8 17.5 147 601-756 285-441 (461)
484 smart00185 ARM Armadillo/beta- 25.6 97 0.0021 23.7 3.6 28 1069-1096 13-40 (41)
485 KOG0624 dsRNA-activated protei 25.5 1.1E+03 0.023 28.3 12.7 31 1693-1723 53-83 (504)
486 KOG3678 SARM protein (with ste 25.4 1.4E+03 0.029 28.3 16.3 148 72-223 183-336 (832)
487 PRK10803 tol-pal system protei 25.1 5.3E+02 0.011 30.1 11.0 52 1364-1415 190-241 (263)
488 PRK10866 outer membrane biogen 24.8 1.1E+03 0.024 27.1 19.4 179 1567-1784 30-230 (243)
489 TIGR03092 SASP_sspI small, aci 24.5 1.1E+02 0.0024 26.6 3.7 27 1232-1258 39-65 (65)
490 PF14225 MOR2-PAG1_C: Cell mor 23.9 1.2E+03 0.026 27.2 17.4 200 178-394 47-257 (262)
491 KOG3060 Uncharacterized conser 23.9 1.2E+03 0.025 27.0 22.5 152 1573-1785 56-207 (289)
492 KOG2041 WD40 repeat protein [G 23.7 1E+03 0.022 31.1 13.0 183 1253-1456 644-851 (1189)
493 KOG4162 Predicted calmodulin-b 23.6 1.9E+03 0.041 29.4 22.1 224 1511-1797 300-544 (799)
494 PF13041 PPR_2: PPR repeat fam 23.6 1.4E+02 0.0031 24.3 4.4 37 1363-1401 12-48 (50)
495 PF04184 ST7: ST7 protein; In 23.3 1.5E+03 0.032 28.9 14.2 32 1613-1647 259-290 (539)
496 KOG2047 mRNA splicing factor [ 23.2 1.8E+03 0.039 29.0 15.5 214 1532-1796 43-278 (835)
497 KOG3687 Tuberin - Rap/ran-GTPa 22.9 2.1E+03 0.045 29.7 21.1 49 164-212 484-532 (1697)
498 KOG1048 Neural adherens juncti 22.5 7.6E+02 0.016 32.9 12.3 108 158-270 524-642 (717)
499 PF04510 DUF577: Family of unk 22.4 9.9E+02 0.022 25.7 13.3 97 258-356 60-167 (174)
500 PF08161 NUC173: NUC173 domain 22.0 1.1E+03 0.024 26.1 15.6 165 915-1095 16-197 (198)
No 1
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=100.00 E-value=8.5e-152 Score=1529.83 Aligned_cols=1754 Identities=41% Similarity=0.693 Sum_probs=1527.8
Q ss_pred HHHHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccC
Q 000196 24 DALNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~-~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~ 102 (1874)
..+..++..|++++.. +.+|++|+..+|....++++.+.+.+|.+.+++.++++.++.+.+.+.||+.+...++.+...
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t 84 (2341)
T KOG0891|consen 5 SVLKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGT 84 (2341)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhc
Confidence 3788999999998754 445999999999999999999999999999999999999999999999999999999888622
Q ss_pred c-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHH
Q 000196 103 E-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMA 181 (1874)
Q Consensus 103 ~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la 181 (1874)
. ......++.+||+.+++ +.|..++..|++++|.++..++...+++++++++.+++|+ ++..+.+|++|+..++.++
T Consensus 85 ~~~~~~~s~~~n~l~~l~~-~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~-~~~~~~~~~~a~~~~~~l~ 162 (2341)
T KOG0891|consen 85 EHDRKNISRLANYLRYLLP-SNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWL-GERQEYRRLAAVLIIKELA 162 (2341)
T ss_pred ccccchhHhHHHHHHHhhc-cCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-hhhhhhhhHHHHHhhhhHh
Confidence 2 34557899999999998 5699999999999999999999999999999999999999 6777889999999999999
Q ss_pred hhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000196 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1874)
Q Consensus 182 ~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al 261 (1874)
.++|..++|+++.++..+|.+++|+++.+|..|+.|++.++..+.+|+.....+||+.+++.+..++..+. .-.|+++
T Consensus 163 ~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~~rcvd~~~~~l~~~~--~~~~~~~ 240 (2341)
T KOG0891|consen 163 DNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLKPQWYQRCVDEARHGLSSDG--VKIHASL 240 (2341)
T ss_pred hcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhhhHHHHHHHHhccccccchH--HHhhhHH
Confidence 99999999999999999999999999999999999999999999988877788999999999999987653 2289999
Q ss_pred HHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchH
Q 000196 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSG 341 (1874)
Q Consensus 262 ~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a 341 (1874)
++++++++....++ .++..++.........++..++..+...+|.+|.+.+..|...|++..|.+++..+.+.+ ..+
T Consensus 241 ~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~ 317 (2341)
T KOG0891|consen 241 LVYNELLRISDPFL-EKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK--TRA 317 (2341)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc--hhH
Confidence 99999999776555 777788888888888999999999999999999999999988999999999999988433 899
Q ss_pred HHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCC---CCCchhHHHHHHHHHHhCCCchHHH-HHHHHHHHhcCCCHHH
Q 000196 342 FIALGEMAGALDGELFHYLPTITSHLREAIAPRRG---KPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTL 417 (1874)
Q Consensus 342 ~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~---~~~~~a~~~l~~l~~~~g~~~~p~l-~~ll~~ll~~~ls~~l 417 (1874)
+..||.+|.+++..+.+|...+...+.+.+..... +-....|.|++.++.++|+.+..++ ..+|+.++.+++++.+
T Consensus 318 ~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~il~~~~~~~~~~~l 397 (2341)
T KOG0891|consen 318 FVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLLASALGPADQKDLNKDILEQMFKCTLSDSL 397 (2341)
T ss_pred HHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHHhhccCHHHHHhHHHHHHHHHhcCCchHHH
Confidence 99999999999999999998888888887744311 1134789999999999999766666 7899999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-cCCCccccccCCchhHHHHHHhhcccccCC
Q 000196 418 VDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNV-MNIPQQVSDLNGSAPVQLALQTLARFNFKG 496 (1874)
Q Consensus 418 ~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~ 496 (1874)
.+++..++..+|++.+.+++++++.++.++.|..+.+............ .....+.++ +...+.+|+++++.|.|.+
T Consensus 398 ~e~l~~l~~rl~~l~~~i~~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p~~~~~~~~~--~~~~~~~a~~~l~~~~~~~ 475 (2341)
T KOG0891|consen 398 LERLFILSQRIPKLGQSIQDRLLNMTSQVLSGKAFIQPGQFTVLPKLAIPKAILQKTGD--STDDIQLAFKTLGGFKFSG 475 (2341)
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHhCccccCccccCccchhcccchhhhhccc--ccHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999998876533211110000 001112222 2223788999999999999
Q ss_pred CcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChh
Q 000196 497 HDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVT 576 (1874)
Q Consensus 497 ~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~ 576 (1874)
+....|++.++..|++++++++|+.|+.+|+.++..+.. +.+++....+++..++.+++..+++|+++.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~-----------~~~~~~~~~~~v~~vl~~ll~~aia~~~~~ 544 (2341)
T KOG0891|consen 476 YSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDII-----------CSQTSPHALQVVKEVLSALLTVAIADTDPD 544 (2341)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhh-----------hhcccchHHHHHHHHHHHHHHHhccCCCcc
Confidence 999999999999999999999999999999999986652 224555566789999999999999999999
Q ss_pred HHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCCh
Q 000196 577 VRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADN 656 (1874)
Q Consensus 577 vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~ 656 (1874)
+|.+++.+++ .+|+++++|+++++.++.+++|+...++.++..++|+++..||++++|.+|+.++..++.++.+ +..
T Consensus 545 i~~~v~~~l~--~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~s-g~~ 621 (2341)
T KOG0891|consen 545 IRIRVLSSLN--ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFS-GMA 621 (2341)
T ss_pred hhhhHHhhhc--cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhc-chH
Confidence 9999999996 7999999999999999999999999999999999999999999999999999999999999998 888
Q ss_pred HhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHH
Q 000196 657 KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE 736 (1874)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~ 736 (1874)
+..++++..++.++...+..+.||+.+++..+++.+.+. .+.+..++..++++|+.++|+.+..+++.+++.+.+
T Consensus 622 r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~-----~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~ 696 (2341)
T KOG0891|consen 622 RTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDP-----SSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIK 696 (2341)
T ss_pred HhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhcc-----chhhHHHHHHHHHHHHHhccchhhhccchHHHHHHH
Confidence 889999999999999999999999999999999999986 668888999999999999999999999999999999
Q ss_pred HHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccC
Q 000196 737 ALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLS 816 (1874)
Q Consensus 737 ~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~ 816 (1874)
.+.|.++..+|.++.+++|++++..|+++.||.++|.+++.+.+.++++....+|+++++.+|.+|++|||+++......
T Consensus 697 ~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~ 776 (2341)
T KOG0891|consen 697 MLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTS 776 (2341)
T ss_pred HHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhh
Confidence 99998889999999999999999999999999999999999999999998999999999999999999999987654311
Q ss_pred CCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCC
Q 000196 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1874)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~ 896 (1874)
. . ............+....... .+..++||+.+.+..|+.+++|++++.+|..++++++.|+.++|.+|..|
T Consensus 777 ~-~----~~~~~~~k~~~~~~~~~~~~---~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~ 848 (2341)
T KOG0891|consen 777 A-S----KISSEQIKSDIDISLLESGV---NPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLF 848 (2341)
T ss_pred h-H----hhhhccccccchHHHHHhhh---hhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhh
Confidence 0 0 00000000000111111111 23448899999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHH
Q 000196 897 LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLA 976 (1874)
Q Consensus 897 l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~ 976 (1874)
+++++|.++.+.+.+.++.+++++.+++.++..+++|+++|++.++..+..+|.... .+..+++.+++.+..+
T Consensus 849 l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~~~~-------~l~~~~~~l~~~i~~~ 921 (2341)
T KOG0891|consen 849 LDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWPPDT-------SLQITIISLIEDIAVA 921 (2341)
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhhhHH-------HHHHHHHHHHHHHHHH
Confidence 999999999999999899999999999999999999999999999999999997321 2345778899999999
Q ss_pred hhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHh
Q 000196 977 LNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTR 1055 (1874)
Q Consensus 977 l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~-~~~~vr~~ai~~l~~ 1055 (1874)
++.+|+.|++..++.++..+ ..+++.++....++++++..+|...+.|.|.+.|.++++++.. .+..+|..++.+++.
T Consensus 922 l~~~f~~~l~~~~~~~l~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~ 1000 (2341)
T KOG0891|consen 922 LGGEFKKYLPELLPTMLTVL-QHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGR 1000 (2341)
T ss_pred HHhHHHHhhhhhccchheee-cccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHH
Confidence 99999999999999999999 5577778888889999999999999999999999999999875 677899999999999
Q ss_pred hcccccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCCCCchhHHHHHHHHhcCC
Q 000196 1056 LIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRRRE 1135 (1874)
Q Consensus 1056 l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~~~~~~~~~~~~~~~~~~ 1135 (1874)
+..++++..|.++|++++.|.+... ++++..+++.+|.+..++|.+|.+|+|++.+.+...++.|..|+..+.++..+.
T Consensus 1001 l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (2341)
T KOG0891|consen 1001 LAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLGKDFAIFIPMVNKKLVEHRIQHSTYDELVSKLLQNE 1079 (2341)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCceeehHHHHHHHHhhhhhhhHHHHHHHHHHhcCC
Confidence 9999999999999999999999987 999999999999999999999999999999999999999999999999999988
Q ss_pred CcccCchhHhhhhccCCccccCCCCCCCCCCCCCCCchhhh-hcccccccCCCChhhHHHHHHHHHHHHHhcCCCHHHHH
Q 000196 1136 PLILGSTAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQK-QLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPALRT 1214 (1874)
Q Consensus 1136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~W~~~~~~~ll~~sps~~ir~ 1214 (1874)
+++.+......+. .|.... .+...+.. +...... ..+.|...++.+++||.+|.++.++.+++++||+++|+
T Consensus 1080 ~l~~~~~~~~~~~--~~~~~~----~~~~~~~~-~l~~~~~~l~~~w~~~~~~s~d~~~e~~~~~~i~~lk~~~s~~lr~ 1152 (2341)
T KOG0891|consen 1080 PLPDDVLSAGESD--RPSRQM----NSDPADVT-KLPVNQNALKKAWESSQRVSKDDWQEWIRRLSIELLKESPSHALRA 1152 (2341)
T ss_pred ccCcccccccccc--Cccccc----cccccccc-hhhhhHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhcchhhHHH
Confidence 7765432211100 000000 00000000 1111111 12334467889999999999999999999999999999
Q ss_pred HHHHHhhChhHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 000196 1215 CARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGAL 1294 (1874)
Q Consensus 1215 c~~La~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~p~~i~~~ll~l~e~m~~~~~~l~i~~~~l~~~ 1294 (1874)
|..++..+.++++++||++|.|||.++++..|..+.+.++.+++++++| +++|+++|++|||||.++|+||+..+|+..
T Consensus 1153 ~~~l~~~~~~l~r~~f~~~~~s~w~e~~~~~q~~l~~~le~~~~~~~i~-e~~q~l~nl~ef~eh~~~plpi~~~~L~~~ 1231 (2341)
T KOG0891|consen 1153 CSSLAQAYYPLARDLFNAAFVSCWTELDSSYQNDLIKSLEIALSSPDIP-EIIQTLLNLAEFMEHDDKPLPIPIKTLGLY 1231 (2341)
T ss_pred HHhhhhhccccchhhhhHHHHHHhhhcccchhhhhhhhHHHHHhCCccH-HHHHhhhhHHHHHHhcccCCCcchhhHHHH
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHH
Q 000196 1295 AEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDAL 1374 (1874)
Q Consensus 1295 a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al 1374 (1874)
+.+|++|++||+|+|.+|... ...++++.++.+++.++++|.+.|+.++++++...+++++|||++.+|++|+
T Consensus 1232 ~~~c~a~~~~l~y~el~~~~~-------~~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~l~~~e~w~e~l~~~~d~l 1304 (2341)
T KOG0891|consen 1232 AEKCRAYAKALHYKELEFLKE-------PSPDTIESLISINNKLQQREAAIGVLKYAQQHSELQLKETWYEKLHRWEDAL 1304 (2341)
T ss_pred HHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHhhcccchhHHHhccHHHHHHhHHHHHHhhhcccccccchhHh
Confidence 999999999999999999754 2358899999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcC
Q 000196 1375 KAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLD 1454 (1874)
Q Consensus 1375 ~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~ 1454 (1874)
.+|+........ ..+...|.|+|+.++|+|+.+.......|.....+.+..++|.++.++|.+++|+.+.+|++.++
T Consensus 1305 ~a~~~~~~~~~~---~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~~~~~~~~~~ap~a~~~~~~~~~w~~~~~~~s~~~ 1381 (2341)
T KOG0891|consen 1305 AAYELREKAGDS---SFELRMGKMRCLEALGDWDELSQLASEKWEVAGQEAKHKMAPLAAAAAWGLGQWDTMAEYVSVMS 1381 (2341)
T ss_pred hhhhcccchhhh---hHHHHhhhhhhhhhhhhHHHHhhhhcccCCCcchhHHHHHHHHHHHhhhccccchhhhhhccccc
Confidence 999987543222 25678999999999999999998888999888888899999999999999999999999999877
Q ss_pred CCCcchhhccccccccCCCCCchHHHHHHHHHHhcC----------------------hhhhHHHHHHHHHHhHhhhhHH
Q 000196 1455 DGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK----------------------VLESYERAYSNMVRVQQLSELE 1512 (1874)
Q Consensus 1455 ~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~----------------------~~esy~ray~~l~~lq~L~Ele 1512 (1874)
.. +.+..|+++++++|+.. ..|||+|+|..++..|++.|+|
T Consensus 1382 ~~-----------------~~~~~~~~a~~a~~~~~~~~~~~~~~~~~dll~~e~~~~~~Es~sr~y~~~~~~~~~~e~E 1444 (2341)
T KOG0891|consen 1382 ED-----------------SQDKAFFRAILALHRDEFEKAVKLIERARDLLDTELTAMAGESYNRAYGVMVRAQMLAELE 1444 (2341)
T ss_pred cc-----------------chhhHHHHHHHhhhhhHHHHHHHhcccHHHHHHHHHHHHHhhHHhhchhhhhhhhhhhhHH
Confidence 53 56788999999888743 4699999999999999999999
Q ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHH
Q 000196 1513 EVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTL 1592 (1874)
Q Consensus 1513 Eii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L 1592 (1874)
|+++|++.+ +++..+.+.|.+|+.+|+...++|++++.+|.++++|+++..+|+||+.+|||+|+..++.+.+
T Consensus 1445 ~~~~~k~~~-------~r~~~i~~~~~~~l~~~q~~~~~wq~~lr~~~~v~~p~~~~~~~ik~a~~cr~s~~~~l~~~~l 1517 (2341)
T KOG0891|consen 1445 EIIEYKKLP-------ERRPIIAKTWWKRLQGCQKNVDDWQRILRVRSLVLSPQEDMEMWIKFASLCRKSGRLALARKLL 1517 (2341)
T ss_pred HHHHhhccc-------chhHHHHHHHHhhHHHhhccHHHHHHHHHHhhhccCCCcchHHHHHHHHHhHHhHHHHHHHHHH
Confidence 999999765 4677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc-ccc-ccccCcchhh
Q 000196 1593 VKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS-TSL-TTATSTNVPL 1670 (1874)
Q Consensus 1593 ~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~l 1670 (1874)
..+++-.+............|.+++++.|++|..+. ..+|++.+..+...+..+....++.. ... .........+
T Consensus 1518 ~~~L~~~~~~~~~~~~~~~~P~~v~a~~~~~~~~~~---~~~~~~~~~~~~s~l~~d~~~~~~~~~~~~~~~~~~~~~~l 1594 (2341)
T KOG0891|consen 1518 NELLERDPSSDLPLPLKARLPQVVYAYLKYLWATDS---KDEAINTLQEFTSTLNSDLGSDPDELLSEPTEAEKQEYTKL 1594 (2341)
T ss_pred HHHHhcCccccccccccccChHHHHHHHhHHHhhcc---chHHHHHhHHHHHHHHhhcCCCchhhhhcccchhhhHHHHH
Confidence 998876654432222244579999999999999985 67899999987766554322111000 000 1112445788
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhc---c---------------
Q 000196 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTL---R--------------- 1732 (1874)
Q Consensus 1671 ~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~---~--------------- 1732 (1874)
.|+|++++|+|......+++...++.++++|..|+.+++.|||+||.||..||+.+..... .
T Consensus 1595 ~a~~~l~~~~w~~~~~~s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~~V~~l~~~~~~~~~~~~~~~~~~~~~ 1674 (2341)
T KOG0891|consen 1595 LARCFLKLGEWQQLLQDSWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFEVVQMLKQVTKAKYAPGANIWNMPDYL 1674 (2341)
T ss_pred HHHHHHhhccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccccchhhc
Confidence 9999999999999988888888899999999999999999999999999999998875211 1
Q ss_pred ---CCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHH
Q 000196 1733 ---GLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQII 1809 (1874)
Q Consensus 1733 ---~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLi 1809 (1874)
.+......|+++|++|||+++.++ .++.+||++|+++|||+||+..+|..++..++..++++.|+.++|||+
T Consensus 1675 ~~~~~~~~~~~~~v~avk~ff~~~~~~-----~~s~lqdtlrl~~L~f~~g~~~~v~q~i~~~~~~~~i~~wl~~ipqLi 1749 (2341)
T KOG0891|consen 1675 GSNSDLMLIHHYAVPAVKGFFRSISLS-----PGSSLQDTLRLLTLWFDFGDNKDVYQALLEGINLIPIDTWLEVIPQLI 1749 (2341)
T ss_pred cCcCCccchHHHHHHHHHHHHHHHhhc-----ccccHHHHHHHHHHHHhcCCCchHHHHHHhhhhHhhHHHHHHhHHHHH
Confidence 111234569999999999999986 345599999999999999999999999999999999999999999999
Q ss_pred HhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCccc
Q 000196 1810 ARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGTTR 1872 (1874)
Q Consensus 1810 ari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~~~~R~~~a~~Il~~~~~~~~~l~ 1872 (1874)
|||+.|...+++.+++++..+|+.||||++|+++++++|.+..|+++|..|+++|++|+|.|+
T Consensus 1750 ari~~~~~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~r~~~a~~ile~m~~~~~~Lv 1812 (2341)
T KOG0891|consen 1750 ARIHTPDQLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVARQKAALSILEKMREHSPTLV 1812 (2341)
T ss_pred HHHhccchHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHHHHHhHHHHHHHHHHhhHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 2
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5e-56 Score=579.39 Aligned_cols=636 Identities=17% Similarity=0.272 Sum_probs=495.7
Q ss_pred HHHHHHHHHHHHHhcCC----CHHHHHHHHHHhhChhHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCC------
Q 000196 1192 WAEWMRHLSIELLKESP----SPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPN------ 1261 (1874)
Q Consensus 1192 w~~W~~~~~~~ll~~sp----s~~ir~c~~La~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~------ 1261 (1874)
+.+|+.+++..+|...+ ++.+.+|+.....+..+...|.|++.+-|....+++.|..+.+.+..+|....
T Consensus 1237 ~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~~~~~~t~ns 1316 (2382)
T KOG0890|consen 1237 YREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLDEAATNTINS 1316 (2382)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhccccccccc
Confidence 88999999999988843 46777777777777789999999999999999999889999988888887632
Q ss_pred ----CChHHHHHHHHHHHHhhhCC----------C----------------------------CC-CCCHHHHHHHHHhc
Q 000196 1262 ----IPPEILATLLNLAEFMEHDE----------K----------------------------PL-PIDIRLLGALAEKC 1298 (1874)
Q Consensus 1262 ----~p~~i~~~ll~l~e~m~~~~----------~----------------------------~l-~i~~~~l~~~a~~c 1298 (1874)
..+-..|+++.+.||+.+.- + .| -||..+|+.++.+|
T Consensus 1317 ~~~~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R~~~~~~~~Tt~~~~~~~v~~fL~~iP~~tLa~aSfrc 1396 (2382)
T KOG0890|consen 1317 RGTASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNRFWKSIMSWTTTGEDIEGVQSFLDLIPSDTLARASFRC 1396 (2382)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhheeeeccccCCCchhhhHHHHhhccHHHHHHHHHhh
Confidence 11346788888888876541 0 02 47788999999999
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHH
Q 000196 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYT 1378 (1874)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~ 1378 (1874)
++|++|++|+|.++.+.... .......-.|..+|..|+|||++.|+.........+..+-.-+|..|+|.+|..||+
T Consensus 1397 ~~y~RalmylEs~~~~ek~~---~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~~qil~~e~~g~~~da~~Cye 1473 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEK---ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLYQQILEHEASGNWADAAACYE 1473 (2382)
T ss_pred HHHHHHHHHHHHhccccchh---HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHHHHHHHHHhhccHHHHHHHHH
Confidence 99999999999984322110 111223445666999999999999999843333333333345999999999999999
Q ss_pred HHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCc
Q 000196 1379 NKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDE 1458 (1874)
Q Consensus 1379 ~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~ 1458 (1874)
+..+.+++. ...+.|.++|..++|+++.+....++.|.+ ..++..++..+..+|+|++++||.+++|.. +.+..
T Consensus 1474 ~~~q~~p~~---~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~--~~n~e 1547 (2382)
T KOG0890|consen 1474 RLIQKDPDK---EKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS--DRNIE 1547 (2382)
T ss_pred HhhcCCCcc---ccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh--ccccc
Confidence 998765442 235789999999999999999999988865 456677888899999999999999999988 33222
Q ss_pred chhhc-cccccccCCCCCchHHHHHHHHHHhcC--------hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhh
Q 000196 1459 SKLRG-LGNTAANGDGSSNGTFFRAVLLVRRGK--------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEG 1529 (1874)
Q Consensus 1459 ~~~~~-~~~~~~~~~~~~~~~f~~a~~~i~~~~--------~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~ 1529 (1874)
+.-.. +|..+........-.|+..+-..+... ..+||.|+|+.++++|++.|+++.++.......+.
T Consensus 1548 ~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~---- 1623 (2382)
T KOG0890|consen 1548 YWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDE---- 1623 (2382)
T ss_pred chhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccc----
Confidence 22122 455544444444445555543333211 23499999999999999999999998664322111
Q ss_pred HHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCc-------ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 000196 1530 RRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPT-------EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPET 1602 (1874)
Q Consensus 1530 ~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~-------e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~ 1602 (1874)
.-..-...|..|+..+++++...++||+.|+.++... +.+++|+++|++|||+|+++.|.++|.++...
T Consensus 1624 ~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---- 1699 (2382)
T KOG0890|consen 1624 DSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES---- 1699 (2382)
T ss_pred cccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----
Confidence 1111237899999999999999999999999998632 34899999999999999999999999988764
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccccccccc-ccCcchhhHHHHHHHHhhh
Q 000196 1603 SHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTT-ATSTNVPLIARVYLKLGSW 1681 (1874)
Q Consensus 1603 ~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~a~~~~~~g~w 1681 (1874)
..|.+.+|+||++|.+|+ ...|+..|++.+...-.+. +. +..+ ....+-....++.+++|+|
T Consensus 1700 --------r~~~i~~E~AK~lW~~gd---~~~Al~~Lq~~l~~~~~~~--~~----~~~~~p~~~n~~i~~~~~L~~~~~ 1762 (2382)
T KOG0890|consen 1700 --------RLPEIVLERAKLLWQTGD---ELNALSVLQEILSKNFPDL--HT----PYTDTPQSVNLLIFKKAKLKITKY 1762 (2382)
T ss_pred --------ccchHHHHHHHHHHhhcc---HHHHHHHHHHHHHhhcccc--cC----CccccchhhhhhhhhhHHHHHHHH
Confidence 258999999999999997 5789999999885432210 00 0000 0112234566899999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCC--CchhhHHHHHHHHHHHHHhhcccc
Q 000196 1682 KRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLP--SVAPQFVVHAVTGYFHSIACAAHA 1759 (1874)
Q Consensus 1682 ~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~--~~~~~~~~~ai~~f~~si~~~~~~ 1759 (1874)
+.++. .-..++++++|+.|+...|+|++.+++.|.|+++++..+.....+ .....|++ ++..|++|+.+|
T Consensus 1763 ~~es~----n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~-~~~~~~~sl~yg--- 1834 (2382)
T KOG0890|consen 1763 LEESG----NFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLK-AIYFFGRALYYG--- 1834 (2382)
T ss_pred HHHhc----chhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHH-HHHHHHHHHHhc---
Confidence 99874 245799999999999999999999999999999998876432211 13345777 999999999875
Q ss_pred CCCcchHHhHHHHHHHHHhcCCcH-----------------HHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHH
Q 000196 1760 KGVDDSLQDILRLLTLWFNHGATE-----------------EVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVREL 1822 (1874)
Q Consensus 1760 ~~~~~~~q~~~RlLtLwf~~g~~~-----------------~v~~~~~~~~~~ip~~~wl~~ipQLiari~~~~~~v~~~ 1822 (1874)
+.+.+|.||||+|||+++|... .++..+.+++..+|+|.|+++.+||+|||+||+.+|.++
T Consensus 1835 --~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~dV~~v 1912 (2382)
T KOG0890|consen 1835 --NQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQDVARV 1912 (2382)
T ss_pred --chhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCchHHHHH
Confidence 6889999999999999985432 245567788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCcc
Q 000196 1823 IQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGTT 1871 (1874)
Q Consensus 1823 l~~ll~~i~~~hPqa~ly~L~v~~kS~~~~R~~~a~~Il~~~~~~~~~l 1871 (1874)
|.+||.++..+|||+++|.+++.+||..+.|+++|++|+++-+.+++..
T Consensus 1913 l~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~~ 1961 (2382)
T KOG0890|consen 1913 LKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPDY 1961 (2382)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCccH
Confidence 9999999999999999999999999999999999999999999888764
No 3
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.2e-53 Score=594.99 Aligned_cols=1507 Identities=22% Similarity=0.252 Sum_probs=1090.8
Q ss_pred hHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchh
Q 000196 275 MMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 275 ~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~ 354 (1874)
+.+.++.++........+....++ .+.-+++..+.+.+.-|.. |.+..|+.++....+...+..... +++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~s~~f~~-~~~~~~~~i~~~~~~~~~~~~~~~-------~~~- 119 (2105)
T COG5032 50 LSNVNDLVRNSTQSLLNTISNLIK-IVKFVLPLKSFFLSPIFAK-LRALPMTKILCISADTYCLSLSIK-------ALA- 119 (2105)
T ss_pred hcchHHHHHhhhhhhhhhhhhhhh-HHHHHHHHHHhhccHHHHH-HhccchhHHhhhhhhhhhhcccch-------hhh-
Confidence 445566666666666667677777 7888899999999999998 988888886655543322222222 222
Q ss_pred hhhhhhHHHHHHHHHhhcCCC-CCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChH
Q 000196 355 ELFHYLPTITSHLREAIAPRR-GKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLP 433 (1874)
Q Consensus 355 ~~~p~l~~i~~~l~~~L~~~~-~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~ 433 (1874)
+.++++.+...+++.+ .+- -+.+ ..|.|+|..+..+++.+..++..++.....+.+++........+.+.++.+.+
T Consensus 120 -~~~~~~~~~~~~~~~~-~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~e~~~~~~~ 196 (2105)
T COG5032 120 -DDESLTTILKTIRELL-SKFLLRLR-LLFLFIGLLAQKFSEAQSKLFFKLLLSILKEILSDAYEALLNDLLENLKSLKE 196 (2105)
T ss_pred -ccHHHhHHHHHHHHHh-HHHHHHHH-HHHHHHHHHhhhhhHHHHhhhhhhhhhcchHHHHHHHHHHHHHHHhhcccchH
Confidence 5678888888888888 432 1222 67899999999988877777765555555666777788788888899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCc-------cCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHH
Q 000196 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNV-------MNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506 (1874)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~ 506 (1874)
++++++.+.+...+.|..|.............. .....-.....+.+.....+..+..+.+. ..+..+++..
T Consensus 197 ~~~~~l~~~l~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~-~~~~~~~~~~ 275 (2105)
T COG5032 197 TLQNRLLPLLFNISDGNYFKVEIGRKLLDHLNALGQILDCQKIAKITKSFRSLPVIIKKFLNLLLIKVS-YYLPSFFRLS 275 (2105)
T ss_pred HHHHHHHHHHHhhcCccceeccccccchhhHHHhhhhhhccchhhhhhhhcCChhHHHHHHHHhhhHhe-eeccchhhhh
Confidence 999999999998888876654322211000000 00000000011112223333333333222 2345677888
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
...|.++.+..+++.+...|+.++..... +.+...+..+.+...+.+++...+.++.+++|..++..+.
T Consensus 276 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~i-----------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (2105)
T COG5032 276 LLSYLDHFETDLFKTFLVTSCFLFFVDEI-----------CKPESEHLAEEVSEKLSKFLTIEIIDSFPEIRISALSSLL 344 (2105)
T ss_pred hhHhhcCcchhHHHHHHhhheeeeeeccc-----------cCcccccchHHHHHHHHHHHhhhcccccHHHHHHHHhccc
Confidence 88999998999999999888777654331 1122233455567777788888888999999999666663
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHH
Q 000196 587 GNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLL 666 (1874)
Q Consensus 587 ~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L 666 (1874)
..|+.+++.++.+...+....|.....+..+....+++...+|+.++|.+++.+....+.+..+ +.....+.+...+
T Consensus 345 --~~fd~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~ 421 (2105)
T COG5032 345 --VIFDYHLALPDAVRLLFGESNDKVFLISELALDSTGRLLRVLPARVLPSLFEFLLSLLTVLKIS-GLILEFEISAQLL 421 (2105)
T ss_pred --cccCccccCHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccHHhhhhHHHHHHHHhhhhhhhc-chHHHHHHHHHHH
Confidence 5788889999999999999999999999999999999999999999999999999999988887 7777788888888
Q ss_pred HHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc-cchhhcHHhHHHHHHHHHhcCcchh
Q 000196 667 GCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 667 ~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
..++........++..+.+..+++...|. ........+..+|++...+| ..+.+|....++.+...+++..+..
T Consensus 422 ~~~i~~~~~l~~~~~~~~~~~~l~~~~d~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 496 (2105)
T COG5032 422 CNLIRSSNQLLTSLISPYFLFILPKCIDS-----SNSEISYRVENLGELKDILGLDRITDYQALSLRLIIVSIQLRSFVF 496 (2105)
T ss_pred HHHHhhhHHhhhhhcchhHHhhhhHhhcc-----ccHHHHHHHHHHHHHHHHhhhhhccHHHHHhhhHhHHHHHHhhccc
Confidence 89999888888888888888888888875 35566677888999999888 5778888888888888888887778
Q ss_pred hHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCccccccc
Q 000196 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1874)
+|+++..++++++. .++.++.++|+.+.....+.+......+|..+.++.|.+|++||+.+..........
T Consensus 497 ~~~~~~~~~~~l~~---~~~~~~l~~~~~~~~p~~I~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~s~~~------ 567 (2105)
T COG5032 497 KREAINQIFKQLAS---IVIKPFLDYPKRLDLPIKIVTVVYVALLRRPTEKLSGVLGSIDKYSHIESEEMSSSD------ 567 (2105)
T ss_pred hhhHHHHHHHHHHH---hhhhhhhhhHHHhCcceeEEEeecchhhhHHHHHHHHHHHHhhHHHHHHHhcccccC------
Confidence 99999999999987 667888888887777777776666666799999999999999998776443311100
Q ss_pred CCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 000196 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLF 905 (1874)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll 905 (1874)
.........+ ...-+....++.+++|.++....|+.+|+++..+.+|.+++++++.++..++..+.++.+.. |.++
T Consensus 568 -~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 643 (2105)
T COG5032 568 -FPWTKNPVGL--QLLAVYGFIRSIDDLYFTVSDPTLIEILKLPVLSIVHSAIIEAIMLIKLSLGSESSQFEDLN-PSFL 643 (2105)
T ss_pred -ChhHhcchhh--HHHHHhccccccchhhhhhhhHHHHHHhhhHHhhcccCchHHHHHHHHHHHHhhhccccccC-chHH
Confidence 0000000011 00001111366778888888889999999998877776679999999999999999999988 9999
Q ss_pred HHHhcCCcchhHHHHHH-HHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhcc
Q 000196 906 HTVRTCDDYLKDYITWK-LGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTH 984 (1874)
Q Consensus 906 ~~l~~~~~~~~~~~~~~-l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~y 984 (1874)
....+......+..+++ +..++..+.++++.++..+......+|.... ..+..+++.++.+...+..+++.+
T Consensus 644 ~i~~n~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~e~~~~ 716 (2105)
T COG5032 644 YIFSNNSISDILFYFQNFLELIVIAFFPLIRSEIIGIVLISSLFSKTWI-------LLKLLLIAFISKLISALQGELKML 716 (2105)
T ss_pred HHHHhccHhHHHHHHHHHHHHHHHhhccchHHHHHhHHHHHHHHHHhhh-------hhHhhHHHHHHHHHHHhccchhhh
Confidence 99988877666666666 7888889999999998888877776665311 012234467777777777788888
Q ss_pred chhhHHHHHHhcccc-cccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHH-HHhhcccccc
Q 000196 985 LPVILPCCIQVLSDA-ERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIET-LTRLIPRVQV 1062 (1874)
Q Consensus 985 l~~llp~ll~~l~~~-~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~-l~~l~~~~~~ 1062 (1874)
.+.++...+.....- +..-+......++..+..++..+..|++.++|.+.++.+.... .....+.-+ ++.++...++
T Consensus 717 ~~~~~~~~~~l~~~~~~~~~s~~~~~~i~~~~~~~~~~l~~~~~~~l~~i~~~~e~~~~-~l~~~~~i~~~~~f~~~~n~ 795 (2105)
T COG5032 717 APTLFTLFLVLVERYLDVEYSSVSFKLLLVILVYFGGNLESLVLLILDLIVMLVEYTEL-GLQESIFIERLSQFFKFKNL 795 (2105)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhcccChhHHHHHHHHHHHHHHHhhhhcc-ccHHHhHHHHHHHHHHhhhh
Confidence 888888777666410 1111111123455666678888899999999988888865422 233333333 6677777888
Q ss_pred cchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccccc-chhhHHHHH-HhCCCCchhHHHHHHHHhcCCCcccC
Q 000196 1063 TGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTI-FIPSIHKLL-LKHRLRHKEFEEIEGRLRRREPLILG 1140 (1874)
Q Consensus 1063 ~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~-~ip~i~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1140 (1874)
..+++++++++.+.+... ..++....+..+.+..+.+.++.. |+|.+...+ ...++.|+.+..++++-.++++++..
T Consensus 796 ~~~~~~l~~~l~~~l~~~-~~l~~~~~~~~~~l~~~~~~~~~~~fi~~~~~~l~~~~~~~~~~l~~l~~~~~k~~~~~~~ 874 (2105)
T COG5032 796 SENASRLLPPLMDNLSKS-HELRCVSEDDVSALLIQLLTDRVICFIPVINSSLGDSRRIFLSLLAQLLDDSLKEESLPYN 874 (2105)
T ss_pred HHHHHHHHHHHHHHHhhh-HHHHhhhHhhHHHHHHHHhhhhhhhhhhhHHHhhHHHHHHHHHHHHHHhhcccccccchhh
Confidence 889999999999999877 889999999999999999999998 999888877 56667888888888888877766542
Q ss_pred chhHhhhhccCCccccCCCCCCCCCCCCCCCchhhh--------hcccccccCCCChhhHHHHHHHHHHHHHhcCCCHHH
Q 000196 1141 STAAQQLSRRVPVEVISDPLNDVDSDPYEDGTDAQK--------QLRGHQASQRSTKEDWAEWMRHLSIELLKESPSPAL 1212 (1874)
Q Consensus 1141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~w~~W~~~~~~~ll~~sps~~i 1212 (1874)
..-. ..... .+. ....+...+... ....|..++..++++|++|..++.+++.++.|..++
T Consensus 875 l~~~------~~~~~--~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~l 942 (2105)
T COG5032 875 LNVD------RGTDL--REF----FQTVKSKAEVLSMLPFVQSILFEAWNRVDFLLKDFWQEELDNLLVALLKELPFMAL 942 (2105)
T ss_pred ccee------eceec--ccc----ccChHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHhccchHHh
Confidence 1100 00000 000 000000000001 001122456789999999999999999999999999
Q ss_pred HHHHHHHhhChhHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCChHHHHHHH---HHHHHhhhCCCCCCCCHH
Q 000196 1213 RTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSPNIPPEILATLL---NLAEFMEHDEKPLPIDIR 1289 (1874)
Q Consensus 1213 r~c~~La~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~~~p~~i~~~ll---~l~e~m~~~~~~l~i~~~ 1289 (1874)
+.|+.++..+.++++++|+..+..||.++...+++.+...+..++..+..|+.+.+..+ |+.||++|..++++++..
T Consensus 943 ~~~s~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~ 1022 (2105)
T COG5032 943 RDCSILSDLYFMLGRELWNSVSFECWLELMNSYKRLLIKSLKSKLHLPTIPILILQMLLDSKNLTEFTEHQLKNLPLPSL 1022 (2105)
T ss_pred hhcchhHHHHhhccHHHHhHHhHHHHHHHhhhhhHHHHHhHHHHhhcCCCCchhhhhhhhhcchhhhhhhhhheecchhh
Confidence 99999999999999999999999999999988999999999999999999999999999 999999999999999888
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcC
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQR 1369 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~ 1369 (1874)
..+.....|+.+++++|+.|.++-.. .....++.+++++..+++.|...|+..........++++.|++.+++
T Consensus 1023 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1095 (2105)
T COG5032 1023 SIGFYESLCSFLAKLLHDEELYFFPL-------LFVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQLKPHLVKYLQR 1095 (2105)
T ss_pred hhhHHHHHHHHHHHHhHHHHHHhccc-------chHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhhhHHHHHHHHH
Confidence 88889999999999999999998532 12478899999999999999999977665555556667899999999
Q ss_pred HHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHH
Q 000196 1370 WDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEY 1449 (1874)
Q Consensus 1370 W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~ 1449 (1874)
|.+++..|....... . ...+...+.+++....+.|+....+++..|-......|.-..+.++.++|..|.|.....+
T Consensus 1096 ~~~~l~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~q~~ 1172 (2105)
T COG5032 1096 WYEALNRYFELLSKG-D--RLFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRRRKLLETLVATAYEQVGEWYKAQQL 1172 (2105)
T ss_pred HHHHHHHHHHHHhhc-c--chhHHHHhhhhhhhHHHHHHHHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHhHHHHHHH
Confidence 999999998877543 2 2245678999999999999998888876553333334456778999999999999999999
Q ss_pred HhhcCCCCc-chhhccccccccCCCCCchHHHHHHHHHHh-c---------ChhhhHHHHHHHHHHhHhhhhHHHHHH--
Q 000196 1450 VSRLDDGDE-SKLRGLGNTAANGDGSSNGTFFRAVLLVRR-G---------KVLESYERAYSNMVRVQQLSELEEVID-- 1516 (1874)
Q Consensus 1450 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~-~---------~~~esy~ray~~l~~lq~L~EleEii~-- 1516 (1874)
.+.+..... ...... ...... ...+...-..+..+.. . ...++|.+++....+.+...|++|++.
T Consensus 1173 ~e~~~~k~~~~~~~~s-~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~~~~~~~~~~e~~~~~ 1250 (2105)
T COG5032 1173 YEVAQRKARSKEFPFS-LQYLYW-HINDIDCADKLQSVLAELSLVTGISELLLEESWRRALFSNIKDSLESELEEIIDGM 1250 (2105)
T ss_pred HHHHhhhcccccCchh-hHHHHH-cccchhhHhhhhhhhhhcccccchhhhccchhHHHHHhhhHHhhhhhhhhHHhhhh
Confidence 887754210 000000 000000 0000111111111111 0 146789999999999999999999998
Q ss_pred hhcCCCCCCchhhH--HHHHHHHHHHHhhh---ccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcC-ChhHHHH
Q 000196 1517 YCTLPVGNPVAEGR--RAIIRNMWTERIQG---TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSG-RISQARS 1590 (1874)
Q Consensus 1517 ~~~~~~~~~~~~~~--~~~l~~~W~~Rl~~---~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g-~~~~a~~ 1590 (1874)
+++.... ... ...+.+.|..++.+ +...+..|..+...+..+..+.+....|+++++.|++.+ +..+...
T Consensus 1251 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1326 (2105)
T COG5032 1251 YKSNEDF----GALMLLSLSAELWDKILEGRSSCSKSIKLSLNIWLDLSIVVSPKDEPELFIKFVELCEASSIRSKLLEK 1326 (2105)
T ss_pred hhcccch----HHHHHHHHHHhccchhhcchhhhhHHHHHHHHHHHHHhhhcCHhhhhhHHHHHHHHHhhhhHHHHhcch
Confidence 5443211 122 34566799999999 999999999999999999988776789999999999999 7777777
Q ss_pred HHHHHhcCCC-CCCcccc-cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc----ccccccc--
Q 000196 1591 TLVKLLQYDP-ETSHENV-RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA----ASTSLTT-- 1662 (1874)
Q Consensus 1591 ~L~~l~~~~~-~~~~~~~-~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~----~~~~~~~-- 1662 (1874)
.+..+.+-.. ...+.+. ....+|.+.+...+..|+... +..+......+...+....+.++. ...+...
T Consensus 1327 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1403 (2105)
T COG5032 1327 NIQELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWR---QNAFLRINPELLPLLSSLLNLQSSSLSKQLVSRGSSE 1403 (2105)
T ss_pred hHHHHHhccccccchhhhhhhcCCCCchhhhhhhhhhHHH---Hhhhhhhchhhccccchhhhccchhccccccccchhh
Confidence 7777664321 1111111 122346778888888887763 222333333322211111010100 0000000
Q ss_pred ---ccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH-HHHHHHHHHHhhhccCC----
Q 000196 1663 ---ATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS-WALFNTAVMSHYTLRGL---- 1734 (1874)
Q Consensus 1663 ---~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~-wA~~n~~~~~~~~~~~~---- 1734 (1874)
..........++....+.|......+....+.......|..+..+...|+++|+. |+..|++.+.+......
T Consensus 1404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1483 (2105)
T COG5032 1404 SAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLCRLGRRELKAGLNVWNLTNLELFSDIQESEFFEWG 1483 (2105)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 0001123344555555788776655545566777888999999999999999999 99999887765422110
Q ss_pred CCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhh-HHHHHHHHHHhcc
Q 000196 1735 PSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINT-WLVVLPQIIARIH 1813 (1874)
Q Consensus 1735 ~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~-wl~~ipQLiari~ 1813 (1874)
......+..++++..+.++... +.-..++.+|...+|+..|....+.++...+........ |+.++||+..+++
T Consensus 1484 ~~~~~~~~~~~~~~~~~s~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1558 (2105)
T COG5032 1484 KNLKLLSIIPPIEEIFLSNALS-----CYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLS 1558 (2105)
T ss_pred hhhHHhccCCchhHHHHhhhcc-----chHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhhhh
Confidence 1112345667888888888775 456799999999999999998777777777777777665 9999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCccc
Q 000196 1814 SNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGTTR 1872 (1874)
Q Consensus 1814 ~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~~~~R~~~a~~Il~~~~~~~~~l~ 1872 (1874)
.........++.++.++|+.|||++.|++.++.+|....+...+..+.++.+.|.|.++
T Consensus 1559 ~l~~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~~~~~~~~~~~~~~v 1617 (2105)
T COG5032 1559 SLSLLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVALSLENKSRTHDPSLV 1617 (2105)
T ss_pred hcchhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHHHHhhhhhcCChhhH
Confidence 98888889999999999999999999999999999999999999999999999998765
No 4
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7e-39 Score=429.89 Aligned_cols=562 Identities=20% Similarity=0.296 Sum_probs=430.3
Q ss_pred CHHHHHHHHHHhhChhHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCC------CCChHHHHHHHHHHHHhhhCCC
Q 000196 1209 SPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNATSQKHLVQSLEMAFSSP------NIPPEILATLLNLAEFMEHDEK 1282 (1874)
Q Consensus 1209 s~~ir~c~~La~~~~~la~~Lf~~aF~s~w~~l~~~~~~~l~~~l~~~l~~~------~~p~~i~~~ll~l~e~m~~~~~ 1282 (1874)
+..+-+...++..+...|..+|..-|...|+.++++++..+++.+...+++. +.-|.++.++ +|-+..+..
T Consensus 2336 ~~~l~~l~~i~~~~~~~a~~~w~~~Fp~~w~~l~~de~~~~~~~~i~flS~~~h~~q~~~~pnvln~~---v~s~~~~~~ 2412 (3550)
T KOG0889|consen 2336 ADFLDPLLQIQHHDDKVAEKLWVGLFPIVWSSLSKDEIRNLAGSIIPFLSSGYHIKQQGCRPNVLNAL---VESLVKIVP 2412 (3550)
T ss_pred HhhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCHhhhhcccchhccccccchhhhhhccchhHHHHH---HHHHHhhcc
Confidence 4566777888888899999999999999999999999999999999999885 2335666664 455777888
Q ss_pred CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHH
Q 000196 1283 PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKES 1362 (1874)
Q Consensus 1283 ~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~ 1362 (1874)
++++++.++...+...|+|++++.++|.+..+. +.+......++.++|.+||.+|+|.|..+|+|+..... ..+..+.
T Consensus 2413 ~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~-~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~-~eT~~a~ 2490 (3550)
T KOG0889|consen 2413 PIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNK-EMENTKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKF-PETMVAL 2490 (3550)
T ss_pred CCCCCHHHHHHHhccchHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhcc-HHHHHHH
Confidence 889999999999999999999999999886543 11112334678899999999999999999999976553 4566788
Q ss_pred HHHHhcCHHHHHHHHHHHHhcc---CCCchhHH---hHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHH
Q 000196 1363 WYEKLQRWDDALKAYTNKASQA---SNPHIVLE---ATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANA 1436 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~---~~~~~~~~---~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~a 1436 (1874)
.||+.|.|++|+..|++.+... .-|.+..| +...||+|...|.||+.+.++++..-. . .+..++
T Consensus 2491 s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~---~-------~llle~ 2560 (3550)
T KOG0889|consen 2491 SYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGN---Y-------ELLLEC 2560 (3550)
T ss_pred HHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---c-------eeeeeh
Confidence 8999999999999999987432 11211122 568999999999999999999965321 1 266799
Q ss_pred HHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC----------hh--------------
Q 000196 1437 AWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK----------VL-------------- 1492 (1874)
Q Consensus 1437 aw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~----------~~-------------- 1492 (1874)
+||+.||+.+++.+.+....... .......+|+++.++++.. +.
T Consensus 2561 aWrlsdw~~~~~~l~~~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP 2628 (3550)
T KOG0889|consen 2561 AWRLSDWNDQKDALEQKAKSLSD------------VPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLP 2628 (3550)
T ss_pred hccCCcchhHHHHHHHhhhccCC------------CCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999987765432111 0133456777777665521 11
Q ss_pred h-hHHHHHHHHHHhHhhhhHHHHHHhh-cCCCCC----CchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcC--
Q 000196 1493 E-SYERAYSNMVRVQQLSELEEVIDYC-TLPVGN----PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP-- 1564 (1874)
Q Consensus 1493 e-sy~ray~~l~~lq~L~EleEii~~~-~~~~~~----~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~-- 1564 (1874)
+ ++...++.+..+|++.|++|..++. ....++ ...-...+.+.++|++|+++.++|++.|.++++||+.+++
T Consensus 2629 ~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I 2708 (3550)
T KOG0889|consen 2629 ERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMI 2708 (3550)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 2 2233478899999999999998854 333332 1113456778999999999999999999999999998864
Q ss_pred -----C------------------cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHH
Q 000196 1565 -----P------------------TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLK 1621 (1874)
Q Consensus 1565 -----~------------------~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k 1621 (1874)
+ ++.++.-++||+.|||+|-.+.|.+-|.++.++ |+ -.+.-++.|
T Consensus 2709 ~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L~~iytl-p~-----------veiqdaF~K 2776 (3550)
T KOG0889|consen 2709 NKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQLAKIYTL-PN-----------VEIQDAFQK 2776 (3550)
T ss_pred HHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcc-Cc-----------chHHHHHHH
Confidence 2 133667789999999999999999999988765 21 245555656
Q ss_pred HHHhcCCcchHHHHHHHHHHH---HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH
Q 000196 1622 YQWSLGEDLKRKEAFARLQTL---AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEII 1698 (1874)
Q Consensus 1622 ~lw~~g~~~~~~~Al~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~ 1698 (1874)
+- +++...++.- ...++...+ ++. ..-..+..|..+.+.|.++.+++ ..++..
T Consensus 2777 ~r---------eq~~c~l~~~~e~~~gLevi~s----TNl-----~yF~~~q~aeff~lkG~f~~kL~------~~eeAn 2832 (3550)
T KOG0889|consen 2777 LR---------EQAKCYLQNKNELKTGLEVIES----TNL-----MYFSDRQKAEFFTLKGMFLEKLG------KFEEAN 2832 (3550)
T ss_pred HH---------HHHHHHhcChHHHHHHHHHHhc----ccH-----HHHhhHHHHHHHHhhhHHHHHhc------CcchhH
Confidence 52 3344444321 111111000 000 11235678999999999999985 347889
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh
Q 000196 1699 AAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN 1778 (1874)
Q Consensus 1699 ~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~ 1778 (1874)
+.|..|++++..-.|+|..||.|++..++... ....++.+||.||++++.+.+ .+.++..+.|+|+|.--
T Consensus 2833 ~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~------~ni~~a~~avsCyLqA~~~~~----~skaRk~iakvLwLls~ 2902 (3550)
T KOG0889|consen 2833 KAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEP------VNISFACNAVSCYLQAARLYN----SSKARKLIAKVLWLLSF 2902 (3550)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccC------cccHHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999986431 114799999999999998864 34567778888888766
Q ss_pred cCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHh
Q 000196 1779 HGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVAC 1846 (1874)
Q Consensus 1779 ~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~ 1846 (1874)
+.+...+.+++.+.+..||+|.|+.|||||+.-+.+.+ ...+..+|.+|++.||||+.||+..+.
T Consensus 2903 dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e---~~~~~~iL~kia~~yPQal~f~lRta~ 2967 (3550)
T KOG0889|consen 2903 DDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKE---AKLVRLILIKIAKSYPQALYFPLRTAR 2967 (3550)
T ss_pred ccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccc---hhHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 66666889999999999999999999999999999988 477899999999999999999998764
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-42 Score=431.79 Aligned_cols=684 Identities=17% Similarity=0.170 Sum_probs=500.0
Q ss_pred HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc-
Q 000196 43 ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV- 121 (1874)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~- 121 (1874)
|...|..+. ++.+..+..++.++.++.+...+++++++.++-. ...||..|+.+.. ..+.+.++..+|+..+++.
T Consensus 223 a~~~l~~l~--El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~-R~~ALe~ivs~~e-~Ap~~~k~~~~~~~~lv~~~ 298 (1075)
T KOG2171|consen 223 AKSALEALI--ELLESEPKLLRPHLSQIIQFSLEIAKNKELENSI-RHLALEFLVSLSE-YAPAMCKKLALLGHTLVPVL 298 (1075)
T ss_pred HHHHHHHHH--HHHhhchHHHHHHHHHHHHHHHHHhhcccccHHH-HHHHHHHHHHHHH-hhHHHhhhchhhhccHHHHH
Confidence 344444444 5668889999999999999988988876654322 4455555554431 1455666666666655542
Q ss_pred -------CCC--------------hHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 122 -------KRD--------------REILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 122 -------~~d--------------~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
..| ......|.++++|++.+ ||... ++..++.+-..| ...+|..|+||+++|+.
T Consensus 299 l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v---~p~~~~~l~~~l-~S~~w~~R~AaL~Als~ 374 (1075)
T KOG2171|consen 299 LAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV---LPPLFEALEAML-QSTEWKERHAALLALSV 374 (1075)
T ss_pred HHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe---hHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 111 23678899999999987 43332 222233232233 46778999999999999
Q ss_pred HHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCC-hhHHH
Q 000196 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP-VHSIH 258 (1874)
Q Consensus 180 la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~ 258 (1874)
+++||++.|.+.+++|+++++++|+||||+||.||++|++++.+.+. +..+.+++..+.+.+...+.++.. +...|
T Consensus 375 i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~---p~iqk~~~e~l~~aL~~~ld~~~~~rV~ah 451 (1075)
T KOG2171|consen 375 IAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ---PEIQKKHHERLPPALIALLDSTQNVRVQAH 451 (1075)
T ss_pred HHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc---HHHHHHHHHhccHHHHHHhcccCchHHHHH
Confidence 99999999999999999999999999999999999999999987765 446677888888888888877643 66778
Q ss_pred HHHHHHHHHHHcchhhhHHHHHHHHH-HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000196 259 GSLLAVGELLRNTGEFMMSRYREVAE-IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1874)
Q Consensus 259 ~al~~l~~ll~~~~~~~~~~~~~i~~-~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1874)
+|..+++...++.++.+.||++.+++ .+...++++.+.||+.|+++|+++|..+...|.+ |++.+||+|.++|.+.+
T Consensus 452 Aa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p-Y~d~~Mp~L~~~L~n~~~ 530 (1075)
T KOG2171|consen 452 AAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP-YFDRLMPLLKNFLQNADD 530 (1075)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh-HHHHHHHHHHHHHhCCCc
Confidence 99888888888999999999999999 6666678899999999999999999999999986 88999999999998754
Q ss_pred -----CcchHHHHHHHHHhhchh-hhhhhhHHHHHHHHHh---hcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH
Q 000196 337 -----ERDSGFIALGEMAGALDG-ELFHYLPTITSHLREA---IAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDI 407 (1874)
Q Consensus 337 -----~R~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~---L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ 407 (1874)
.|+..++|+|.++.+||+ .|.|+...+|+.+.+. ..+.+...+.+.+.+|+++|+.+|++|.||++.+||+
T Consensus 531 ~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmpp 610 (1075)
T KOG2171|consen 531 KDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPP 610 (1075)
T ss_pred hhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHH
Confidence 268899999999999996 5778888888887766 3333333346789999999999999999999999999
Q ss_pred HHhc-CCCHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHH
Q 000196 408 MFSA-GLSTTLVDALEQITV-SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLA 485 (1874)
Q Consensus 408 ll~~-~ls~~l~~~l~~i~~-~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 485 (1874)
++.+ .+.|+..-. ..-+. ....+ .. ++.+. +.++. ...+ .++ ...+++.|
T Consensus 611 l~~ta~~~p~~~~~-d~~d~e~~~~~-~~-----~e~~~--~~~~e--------------~~~I--~Ts---vl~eK~~A 662 (1075)
T KOG2171|consen 611 LLKTARLDPDVALS-DEEDEEEEQDL-DG-----WEVVE--LGDKE--------------NIGI--RTS---VLDEKETA 662 (1075)
T ss_pred HHHhhccCCcccCc-Cchhhhhcccc-cc-----chhhc--cCCce--------------eeee--eeh---hHHHHHHH
Confidence 9975 233322100 00000 00000 00 00000 00000 0000 011 12245789
Q ss_pred HHhhccccc-CCCcchhhHHHHHh---hhc-cCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHH
Q 000196 486 LQTLARFNF-KGHDLLEFARDSVV---LYL-DDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560 (1874)
Q Consensus 486 l~~L~~~~f-~~~~l~~~v~~~~~---~~l-~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1874)
+++|++|.- .+..|.||+.+++. +.+ .+.|++||++|+.+++.++.+....+. + ......+++..
T Consensus 663 ~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~--~--------~p~~l~~l~~~ 732 (1075)
T KOG2171|consen 663 CEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQ--G--------GPEYLKQLWEA 732 (1075)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhc--c--------ChHHHHHHHHH
Confidence 999999943 24567788887643 333 467999999999999888876543220 0 11146788999
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhccCC-CC------cchhhccH--hhHHHHH---HHhC---------CCC-------
Q 000196 561 LVEKLLIAAVADADVTVRHSIFSSLYGN-RG------FDDFLAQA--DCLSAIF---AALN---------DED------- 612 (1874)
Q Consensus 561 vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~------f~~~L~~~--~~l~~L~---~~l~---------D~~------- 612 (1874)
+.+.++.....+|+++|-.+++++|+.+ +. ++++...- .+...+. ...+ |.+
T Consensus 733 ~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~ 812 (1075)
T KOG2171|consen 733 IRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDL 812 (1075)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 9999999999999999999999998631 11 11111000 0011111 0011 111
Q ss_pred ----HHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHH
Q 000196 613 ----FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKAL 688 (1874)
Q Consensus 613 ----~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~l 688 (1874)
..+-..+.+++..+++...+.+.|.+..+....+..+... .... |+.|.+.++++++.+++...+|.+.+++.+
T Consensus 813 ~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~-~~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~ 890 (1075)
T KOG2171|consen 813 DEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSK-KTVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLV 890 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcC-CcHH-HHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 1234567788899999999999999999888777777665 4445 999999999999999999999999999999
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCc-----chhhHHHHHHHHHHHHhhccc
Q 000196 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA-----AVTKREVAVSTLGQVVQSTGY 763 (1874)
Q Consensus 689 l~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~-----~~~~r~~A~~~Lg~l~~~~~~ 763 (1874)
+..+.+. ++.|++++.+++|.+++.+|...++.+...+|.+...++... +...+++|+.++++++.+...
T Consensus 891 ~~~~~d~-----~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~ 965 (1075)
T KOG2171|consen 891 LEALQDS-----DPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPN 965 (1075)
T ss_pred HHHcCCC-----CHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCc
Confidence 9999985 899999999999999999999999999999999999987542 223458999999999988766
Q ss_pred cccccccchHHHHHHHHHhcCCCC
Q 000196 764 VITPYNEYPQLLGLLLKMLNGELV 787 (1874)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~l~~~~~ 787 (1874)
.+ | ++++++.+++.|-..++
T Consensus 966 ~i-~---vdqvl~~~l~~LPl~~D 985 (1075)
T KOG2171|consen 966 RI-P---VDQVLPAWLSWLPLKED 985 (1075)
T ss_pred cC-c---HHHHHHHHHHhCCCccc
Confidence 53 2 46899999998854433
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-37 Score=358.97 Aligned_cols=626 Identities=17% Similarity=0.230 Sum_probs=469.9
Q ss_pred CcHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000196 21 GSLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~ 99 (1874)
.=|+++.++.+.|.++. +..++|..+|.+++|+.+..++.+...+.++-+..++.++++++++..|.-|+.++|++|-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 34899999999999987 67888989999999999999999999999999999999999999999999999999999877
Q ss_pred ccCcchhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc---CCCcchhHHHHH
Q 000196 100 ALGENASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAV 174 (1874)
Q Consensus 100 ~~~~~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~---~~~~~~~r~aA~ 174 (1874)
. ++...-+...||..+|.. +.|++||+..+.+|..|.+. .++-+.+++..++|++- .+.+++.-..|+
T Consensus 205 ~---~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev----r~dkl~phl~~IveyML~~tqd~dE~VALEAC 277 (885)
T KOG2023|consen 205 Q---TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV----RPDKLVPHLDNIVEYMLQRTQDVDENVALEAC 277 (885)
T ss_pred C---cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh----cHHhcccchHHHHHHHHHHccCcchhHHHHHH
Confidence 4 445566677888888764 45689999999999999886 33333445666666652 466778899999
Q ss_pred HHHHHHHhh--cCccchhchHHHHHHHHHhhcCCch--------------------------------------------
Q 000196 175 LILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTL-------------------------------------------- 208 (1874)
Q Consensus 175 ~~l~~la~~--~p~~~~~~l~~il~~i~~~l~D~~~-------------------------------------------- 208 (1874)
.+|..+|+. +++.+.||+++++|.++.+|+-.+.
T Consensus 278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDddd 357 (885)
T KOG2023|consen 278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDD 357 (885)
T ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccc
Confidence 999999998 6678999999999999999863221
Q ss_pred ------------hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhH
Q 000196 209 ------------AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276 (1874)
Q Consensus 209 ------------~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~ 276 (1874)
.+|...+.||..+..+ .+.+.+..++|-+...|.+. .|.+++++++++|++++++.++|.
T Consensus 358 De~DDdD~~~dWNLRkCSAAaLDVLanv-------f~~elL~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~ 429 (885)
T KOG2023|consen 358 DEDDDDDAFSDWNLRKCSAAALDVLANV-------FGDELLPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFV 429 (885)
T ss_pred cccccccccccccHhhccHHHHHHHHHh-------hHHHHHHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcc
Confidence 2455556666555443 33456778888888888775 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC-CC-CcchHHHHHHHHHhhchh
Q 000196 277 SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI-PA-ERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 277 ~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~-~~-~R~~a~~alg~la~~v~~ 354 (1874)
||+.+++..++.+++++.+.||...|+++++.+.|.-.+--..|+.++|..++..+-+ .+ ..++|..++..+-+..|.
T Consensus 430 p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 430 PHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred cchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999998765433445888888887776543 33 357999999999999999
Q ss_pred hhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCch--HHHHHHHHHHHhc-C-CCHHHHHHHHHHHHhCCC
Q 000196 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVME--PHVRGLLDIMFSA-G-LSTTLVDALEQITVSIPS 430 (1874)
Q Consensus 355 ~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~--p~l~~ll~~ll~~-~-ls~~l~~~l~~i~~~~p~ 430 (1874)
++.||+..|++.+.-+++....+.-.-.+.++|++|..+|..+. .|++-+||+|++. . ++++- +.
T Consensus 510 eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D-----------Kd 578 (885)
T KOG2023|consen 510 ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD-----------KD 578 (885)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc-----------ch
Confidence 99999999999999999776656556788999999999998764 4999999998862 1 22211 11
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhh
Q 000196 431 LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLY 510 (1874)
Q Consensus 431 l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~ 510 (1874)
+.| |++.++.+ +.|| |..|.||...+...-
T Consensus 579 LfP-----LLEClSsi------------------------------------a~AL---------~~gF~P~~~~Vy~Rc 608 (885)
T KOG2023|consen 579 LFP-----LLECLSSI------------------------------------ASAL---------GVGFLPYAQPVYQRC 608 (885)
T ss_pred HHH-----HHHHHHHH------------------------------------HHHH---------hccccccCHHHHHHH
Confidence 111 22222211 1122 112223322221110
Q ss_pred ccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCC
Q 000196 511 LDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRG 590 (1874)
Q Consensus 511 l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~ 590 (1874)
++ -+++ |..+..+....-..-...++.. -.+..+++.+. +.|+ ..
T Consensus 609 ~~----il~~-----t~q~~~~~~~~~~~~~pdkdfi----I~sLDL~SGLa--------------------egLg--~~ 653 (885)
T KOG2023|consen 609 FR----ILQK-----TLQLLAKVQQDPTVEAPDKDFI----IVSLDLLSGLA--------------------EGLG--SH 653 (885)
T ss_pred HH----HHHH-----HHHHHHhccCCccccCCCcceE----EEeHHHHhHHH--------------------HHhh--hc
Confidence 00 0110 1111111100000000000000 00123333332 2333 34
Q ss_pred cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHH
Q 000196 591 FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1874)
Q Consensus 591 f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1874)
..+.+++.+++..++.|+.|+.++||++++.++|.+++.++..|.|.+..++.-+...+... ....-.+|+|++|+++
T Consensus 654 ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~--~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 654 IEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPE--NISVCNNAIWAIGEIA 731 (885)
T ss_pred hHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChh--hchHHHHHHHHHHHHH
Confidence 45667777889999999999999999999999999999999999999998776655444322 2344568999999999
Q ss_pred HhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHH
Q 000196 671 RNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVA 750 (1874)
Q Consensus 671 ~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A 750 (1874)
...+...+||+.+++..|+..++... ...++..+...++|.|+...++.++|+++.++..++..++.-.+.+.++.|
T Consensus 732 ~k~g~~~~~~v~~vl~~L~~iin~~~---~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sA 808 (885)
T KOG2023|consen 732 LKMGLKMKQYVSPVLEDLITIINRQN---TPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESA 808 (885)
T ss_pred HHhchhhhhHHHHHHHHHHHHhcccC---chHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHH
Confidence 99999999999999999999988652 467788999999999999999999999999999999999877778899999
Q ss_pred HHHHHHHHhhcc
Q 000196 751 VSTLGQVVQSTG 762 (1874)
Q Consensus 751 ~~~Lg~l~~~~~ 762 (1874)
..+++.++.-..
T Consensus 809 FrG~c~mi~vNp 820 (885)
T KOG2023|consen 809 FRGLCNMINVNP 820 (885)
T ss_pred HHHHHHheeeCc
Confidence 999999876543
No 7
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=100.00 E-value=8.7e-37 Score=377.85 Aligned_cols=311 Identities=37% Similarity=0.628 Sum_probs=251.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC-------------------
Q 000196 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK------------------- 1490 (1874)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~------------------- 1490 (1874)
||++++|||++|+||.|+++++..+.+ +.+..||+++.++++++
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~~~~-----------------~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l 63 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQSNED-----------------SPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDEL 63 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhccCC-----------------ChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999977642 33567888888887653
Q ss_pred ---hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcC---
Q 000196 1491 ---VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP--- 1564 (1874)
Q Consensus 1491 ---~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~--- 1564 (1874)
..+||.|+|+.|+++|+|+||||++++......+ ....+.+.+.|++|++++++++++|++||++|+++++
T Consensus 64 ~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~---~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~ 140 (352)
T PF02259_consen 64 SALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQN---PQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLIL 140 (352)
T ss_pred HHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhccc---HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccc
Confidence 4689999999999999999999999998432221 4567789999999999999999999999999999999
Q ss_pred -CcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000196 1565 -PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1565 -~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~ 1643 (1874)
+.+..++|++|+++|||+|++++|.++|.++.++++..+. ..|.+.+|+||++|++|+ +.+|+..|+.++
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~------~~~~v~~e~akllw~~g~---~~~Ai~~L~~~~ 211 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES------LLPRVFLEYAKLLWAQGE---QEEAIQKLRELL 211 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC------CCcchHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 8899999999999999999999999999999876543211 268999999999999996 689999999988
Q ss_pred H-HhcCCCcccc---c--------cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1644 M-ELSSCPVIQS---A--------ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1644 ~-~~~~~~~~~~---~--------~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
+ .+........ . ..............+.|++++++|+|..+++.....++.+++.+.|++|++++|+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 7 4432210000 0 00000011245578899999999999998721134578999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCC---CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000196 1712 GKAWHSWALFNTAVMSHYTLRGLP---SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1874)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~---~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1874)
+|+||+||.+|+++++........ +...+|+..||+||++|+.+| ++++++++|||||
T Consensus 292 ~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~-----~~~~~~~~~RlLt 352 (352)
T PF02259_consen 292 EKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLG-----SKYVRQDLPRLLT 352 (352)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhC-----CCchHHHhhHhcC
Confidence 999999999999999876432110 246789999999999999986 5789999999996
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.5e-29 Score=308.94 Aligned_cols=904 Identities=15% Similarity=0.181 Sum_probs=569.0
Q ss_pred HHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhhcccc
Q 000196 24 DALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~li~~~~ 101 (1874)
.-+.+++++|.|+.+++++ |-+.|...- + ++. +...+..+. +++++.-|.-|...+..++....
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~----~--~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w 69 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLA----K--TEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHW 69 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhh----c--ccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHh
Confidence 4588999999999887776 533333222 1 111 222233333 35666656555555555543321
Q ss_pred Cc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 102 GE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGG-AMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 102 ~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g-~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
.. +.....+.-.-|..++..-....|++.-|.++..+++.-. ..|+++++++++.+ .+.+...|..|+.+|..
T Consensus 70 ~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~-----~S~~~~~rE~al~il~s 144 (1075)
T KOG2171|consen 70 SRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQST-----KSPNPSLRESALLILSS 144 (1075)
T ss_pred hcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHh-----cCCCcchhHHHHHHHHh
Confidence 11 2222333434444444334578999999999999998622 26888877766654 34666899999999999
Q ss_pred HHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhc----cCCCChh
Q 000196 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL----GRNAPVH 255 (1874)
Q Consensus 180 la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l----~~~~~~~ 255 (1874)
+.+.-+..+.+|+..+.+....++.||+..||-+|.+|++.+...+. .+. ...+.+..++|.++..+ .+. +.+
T Consensus 145 ~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~-~~~-~~~~~~~~llP~~l~vl~~~i~~~-d~~ 221 (1075)
T KOG2171|consen 145 LPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLE-NNK-SEVDKFRDLLPSLLNVLQEVIQDG-DDD 221 (1075)
T ss_pred hhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhc-cch-HHHHHHHHHhHHHHHHhHhhhhcc-chH
Confidence 99999999999999999999999999988899999999999988764 111 22233455555554443 333 346
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhHhHhhhChhhH--HHHHHHHHHHHHHHh
Q 000196 256 SIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEH--RDRLVRLSITSLLPRIAHFLRDRF--VTNYLKICMNHILTV 331 (1874)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~--~~~~vr~~~~~~i~~la~~~~~~f--~~~yl~~~~~~Ll~~ 331 (1874)
....++.+|.++++..+.++.+++.++++..+...++ -+..+|..++..|-.+++++|..- ...|.+++++.++..
T Consensus 222 ~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~ 301 (1075)
T KOG2171|consen 222 AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAM 301 (1075)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHh
Confidence 6788888999999999999999999999988887765 478899999999999999977532 123667777777776
Q ss_pred hcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhc-CCCCCCCchhHHHHHHHHHHhCC-CchHHHHHHHHHHH
Q 000196 332 LRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIA-PRRGKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMF 409 (1874)
Q Consensus 332 L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~-~~~~~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll 409 (1874)
+....+- . ...+ .+.+. +....+...+.+++.+++..+|+ .+.|-+-+.++.|+
T Consensus 302 mte~~~D---------------~---ew~~------~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 302 MTEEEDD---------------D---EWSN------EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAML 357 (1075)
T ss_pred cCCcccc---------------h---hhcc------ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHh
Confidence 6432110 0 0000 00000 00112234555666666666664 34444444444444
Q ss_pred hcCCCHHHH-HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHh
Q 000196 410 SAGLSTTLV-DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQT 488 (1874)
Q Consensus 410 ~~~ls~~l~-~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~ 488 (1874)
++.- -..+ .+|- .++.+-.|.+ + .+
T Consensus 358 ~S~~-w~~R~AaL~-------------------Als~i~EGc~--------------------------~--------~m 383 (1075)
T KOG2171|consen 358 QSTE-WKERHAALL-------------------ALSVIAEGCS--------------------------D--------VM 383 (1075)
T ss_pred cCCC-HHHHHHHHH-------------------HHHHHHcccH--------------------------H--------HH
Confidence 3210 0000 0010 1111100000 0 00
Q ss_pred hcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHH
Q 000196 489 LARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIA 568 (1874)
Q Consensus 489 L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~ 568 (1874)
.+ ..+-+-+.+++++.|+|+.||.||..+++++-.... +.......+.+..++..
T Consensus 384 ~~--------~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-----------------p~iqk~~~e~l~~aL~~ 438 (1075)
T KOG2171|consen 384 IG--------NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-----------------PEIQKKHHERLPPALIA 438 (1075)
T ss_pred HH--------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-----------------HHHHHHHHHhccHHHHH
Confidence 00 113344566788999999999999999888753211 01222334444333322
Q ss_pred HhcCCC-hhHHHHHHHhc---cC---CCCcchhhccHhhHH-HHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHH
Q 000196 569 AVADAD-VTVRHSIFSSL---YG---NRGFDDFLAQADCLS-AIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRR 640 (1874)
Q Consensus 569 ~~~d~~-~~vR~~~l~~l---~~---~~~f~~~L~~~~~l~-~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~ 640 (1874)
...++. +.|...+..++ .+ ...+.+|| +.++. .+..+++...+.||+.++..||.++......+.||+..
T Consensus 439 ~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~ 516 (1075)
T KOG2171|consen 439 LLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR 516 (1075)
T ss_pred HhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH
Confidence 333433 35555444433 11 23345666 45566 55556677789999999999999999988889999999
Q ss_pred HHHHHHHHHhhCCCChH---hHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 641 HLIQLLTYLEQSSADNK---CREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 641 ~l~~~l~~l~~~~~~~~---~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
+|..+...+++. ++.+ .|....++++.++.+.+ +.|.|+...+++.++....+. .+.+...++..+..++.++
T Consensus 517 ~Mp~L~~~L~n~-~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~--~~~dd~~~sy~~~~warmc 593 (1075)
T KOG2171|consen 517 LMPLLKNFLQNA-DDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSD--QDDDDPLRSYMIAFWARMC 593 (1075)
T ss_pred HHHHHHHHHhCC-CchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccc--hhhccccHHHHHHHHHHHH
Confidence 887777777765 3222 35567788888888876 789999999999998875322 1224556677788999999
Q ss_pred HhcccchhhcHHhHHHHHHHHHhc--------Cc---------------------------chhhHHHHHHHHHHHHhhc
Q 000196 717 RVGGFGMRQYISELMPLIVEALLD--------GA---------------------------AVTKREVAVSTLGQVVQST 761 (1874)
Q Consensus 717 ~~~g~~~~~~~~~llp~l~~~l~d--------~~---------------------------~~~~r~~A~~~Lg~l~~~~ 761 (1874)
+..|++|.||++.+||.++...+- +. -.+.++.|...|+.++..+
T Consensus 594 ~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~l 673 (1075)
T KOG2171|consen 594 RILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKEL 673 (1075)
T ss_pred HHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987631 10 0245678999999999999
Q ss_pred cccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCcccccc
Q 000196 762 GYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPM 841 (1874)
Q Consensus 762 ~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 841 (1874)
+..+.||.. +++...+..++-..+..||.+++.+++.+-. -. ++...+ . +. ...
T Consensus 674 k~~F~pYve--~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~--~~-~~A~~~---------------~----p~--~l~ 727 (1075)
T KOG2171|consen 674 KEAFAPYVE--QVVELMVPLLKFYFHDGVRKAAAESMPQLLT--CA-LKACQG---------------G----PE--YLK 727 (1075)
T ss_pred hhhhhhHHH--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HH-HHHhcc---------------C----hH--HHH
Confidence 988999975 5677555666666678999999999887531 00 000000 0 00 001
Q ss_pred ccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCC--CCccchhHHHHHHHhcCCcchhHHH
Q 000196 842 DLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV--PYLPKVLPDLFHTVRTCDDYLKDYI 919 (1874)
Q Consensus 842 ~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~--~~l~~ilp~ll~~l~~~~~~~~~~~ 919 (1874)
.+ -..+.+.++..+.++...+.-..+.+++...++.+|..|. +++..++-.++..+..
T Consensus 728 ~l-----------~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~--------- 787 (1075)
T KOG2171|consen 728 QL-----------WEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQ--------- 787 (1075)
T ss_pred HH-----------HHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHH---------
Confidence 11 1356778888888776667777888888899999997763 3444443333332211
Q ss_pred HHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccc
Q 000196 920 TWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDA 999 (1874)
Q Consensus 920 ~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~ 999 (1874)
.+...-..+-...-++....-.+.....+ ......+..++.+++.+.+++|.|++..+.|.++..+...
T Consensus 788 -----~~~~~~~r~~~~~eed~d~~eee~~~e~d------~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~ 856 (1075)
T KOG2171|consen 788 -----HFKRMQDRQEEDDEEDDDIEEEEDLDEQD------AYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSK 856 (1075)
T ss_pred -----HHHHHHhhhhhhhhhhhhhHHHHHHhhhh------HHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcC
Confidence 00000000000000000000001111110 0011245666777788899999999999999999999753
Q ss_pred cccCchhhHHHHHHHH-HHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHH
Q 000196 1000 ERCNDYTYVLDILHTL-EVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLV 1076 (1874)
Q Consensus 1000 ~~~~~~~~~~~il~~l-~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~ 1076 (1874)
. ...|.-...++.-+ .-.|+....|...++|.+...+... .++||++|...+|.++.. .++.+.+....+.|..+
T Consensus 857 ~-~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~-~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~ 934 (1075)
T KOG2171|consen 857 K-TVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDS-DPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQV 934 (1075)
T ss_pred C-cHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 3 32355444444433 3356777888889999999998754 789999999999999986 34666777788888888
Q ss_pred hCCCCH------HHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCC
Q 000196 1077 LDGKND------ELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHR 1118 (1874)
Q Consensus 1077 l~~~~~------~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~ 1118 (1874)
+...+. ...+++..+++-++..-.. -.+ ++++.+.+...-
T Consensus 935 iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~-~i~-vdqvl~~~l~~L 980 (1075)
T KOG2171|consen 935 LQPPLARTEENRRATENAIGAIAKILLFNPN-RIP-VDQVLPAWLSWL 980 (1075)
T ss_pred HcChhhhhHHHhHHHHHHHHHHHHHHHhCCc-cCc-HHHHHHHHHHhC
Confidence 876542 2346666677666655432 234 777777776653
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-29 Score=295.76 Aligned_cols=751 Identities=17% Similarity=0.219 Sum_probs=500.1
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHH-----------HHHhhcc
Q 000196 52 EEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSN-----------YMRTVFE 120 (1874)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~-----------~L~~~l~ 120 (1874)
+..+.+++.++|.+|+.-+.+-+. --++++..+..+|+...|.|..-+.........||.. ++.+.+.
T Consensus 22 e~~l~~~~~~nf~~F~~~Ls~vl~-n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~ 100 (859)
T KOG1241|consen 22 EKQLEQAQSQNFPQFLVLLSEVLA-NDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLG 100 (859)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh-ccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 345667778889998876665221 1234566677889999999988864444566677763 5555553
Q ss_pred cCCChHHHHHHHHHHHHHhhh--CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHHHH
Q 000196 121 VKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVD 197 (1874)
Q Consensus 121 ~~~d~~v~~~aa~~lg~l~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~-~p~~~~~~l~~il~ 197 (1874)
+.++.....|+++++.+|.. +.+.|+++++.++..+.+ +.....|.+++.+++++++. .|..+..+.+.|+.
T Consensus 101 -~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~----~~~~~~k~~slealGyice~i~pevl~~~sN~iLt 175 (859)
T KOG1241|consen 101 -SPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE----EQASMVKESSLEALGYICEDIDPEVLEQQSNDILT 175 (859)
T ss_pred -CCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc----ccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHH
Confidence 46788999999999999874 677899888887777653 44447899999999999998 78899999999999
Q ss_pred HHHHhhc--CCchhHHHHHHHHHHHHHHHHhh-cch-hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000196 198 AIWVALR--DPTLAVRERAVEALRACLRVIEK-RET-RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1874)
Q Consensus 198 ~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~-r~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1874)
.|..+++ .|+..||-||..||-.+++++.. .+. .+++.+++.+++... .+ +.+++++|+.+|..+....-+
T Consensus 176 aIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq----~~-d~~i~~aa~~ClvkIm~LyY~ 250 (859)
T KOG1241|consen 176 AIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQ----SP-DEEIQVAAFQCLVKIMSLYYE 250 (859)
T ss_pred HHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeeccc----CC-cHHHHHHHHHHHHHHHHHHHH
Confidence 9999997 77899999999999999998873 221 144455555555443 33 578999998888888877778
Q ss_pred hhHHHHHH-HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhc
Q 000196 274 FMMSRYRE-VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGAL 352 (1874)
Q Consensus 274 ~~~~~~~~-i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v 352 (1874)
||.+|+.+ ++..-+....+.++.|...+++-+.++++- ++ +-.+. +....+++.. ...+ + ++
T Consensus 251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeE---Ei-----D~~~e-~~e~~d~~~~-p~~~---~-fa--- 313 (859)
T KOG1241|consen 251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEE---EI-----DLAIE-YGEAVDQGLP-PSSK---Y-FA--- 313 (859)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH---HH-----HHHHH-HHHHhhcCCC-chhh---H-HH---
Confidence 99999998 666556666688899999888888877641 11 00000 0011111000 0000 0 00
Q ss_pred hhhhhhhhHHHHHHHHHhhcCCCCCC-------CchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 000196 353 DGELFHYLPTITSHLREAIAPRRGKP-------SLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQIT 425 (1874)
Q Consensus 353 ~~~~~p~l~~i~~~l~~~L~~~~~~~-------~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~ 425 (1874)
..-++.+++.+.+.|...+.+. ...+=.|+..+++.+|.++.|++ +
T Consensus 314 ----~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~V---l-------------------- 366 (859)
T KOG1241|consen 314 ----RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHV---L-------------------- 366 (859)
T ss_pred ----HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhh---H--------------------
Confidence 0112344455555553221111 12455666666666665544422 2
Q ss_pred HhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHH
Q 000196 426 VSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARD 505 (1874)
Q Consensus 426 ~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~ 505 (1874)
||++
T Consensus 367 ---------------------------------------------------------------------------~Fie- 370 (859)
T KOG1241|consen 367 ---------------------------------------------------------------------------PFIE- 370 (859)
T ss_pred ---------------------------------------------------------------------------HHHH-
Confidence 2222
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.-+.+|++.-|.+|+.+.+..+.- |++.-+.
T Consensus 371 ---e~i~~pdwr~reaavmAFGSIl~g----------------------------------------p~~~~Lt------ 401 (859)
T KOG1241|consen 371 ---ENIQNPDWRNREAAVMAFGSILEG----------------------------------------PEPDKLT------ 401 (859)
T ss_pred ---HhcCCcchhhhhHHHHHHHhhhcC----------------------------------------Cchhhhh------
Confidence 124456777777777776655421 1100000
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccch--HHHHHHHHHHHHHhhCCCChHhHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLP--ALRRHLIQLLTYLEQSSADNKCREESA 663 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p--~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1874)
+.. +..++.+...+.|++.-||.++.+.+|+++.++|..+.+ ++...+.-++..+.+ .++...++|
T Consensus 402 -------~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D---ePrva~N~C 469 (859)
T KOG1241|consen 402 -------PIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND---EPRVASNVC 469 (859)
T ss_pred -------HHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh---CchHHHHHH
Confidence 000 123666777788999999999999999999999976543 223333344445543 478888999
Q ss_pred HHHHHHHHhCcc---------ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHH
Q 000196 664 KLLGCLIRNCER---------LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734 (1874)
Q Consensus 664 ~~L~~l~~~~~~---------~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l 734 (1874)
|.+..+++++.+ ...||++.|+..|+......+ ...++.+.++..+|+++.........+-+..+.+.+
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i 547 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 999999975432 345788999999888755421 136778999999999999998887777766666666
Q ss_pred HHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcc
Q 000196 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1874)
Q Consensus 735 ~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~ 814 (1874)
...|... +. +++...... ..+-+|-..|.+.|.. -+| .+| |
T Consensus 548 l~kl~q~---------i~--~~~l~~~dr-----~q~~eLQs~Lc~~Lq~----i~r--------k~~---~-------- 588 (859)
T KOG1241|consen 548 LEKLDQT---------IS--SQILSLADR-----AQLNELQSLLCNTLQS----IIR--------KVG---S-------- 588 (859)
T ss_pred HHHHHHH---------HH--HHhccHhhH-----HHHHHHHHHHHHHHHH----HHH--------Hcc---c--------
Confidence 6555321 11 111100000 0011222222222210 011 000 0
Q ss_pred cCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCC
Q 000196 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCV 894 (1874)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~ 894 (1874)
+ -.-+.+.+++.+++++..+.-...|+.++-|+..+..++|..|.
T Consensus 589 --------------------~---------------~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~ 633 (859)
T KOG1241|consen 589 --------------------D---------------IREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA 633 (859)
T ss_pred --------------------c---------------chhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH
Confidence 0 00134678899999997754456789999999999999999999
Q ss_pred CCccchhHHHHHHHhcCCcc-hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000196 895 PYLPKVLPDLFHTVRTCDDY-LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1874)
Q Consensus 895 ~~l~~ilp~ll~~l~~~~~~-~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1874)
.|++.+.|-+...++++.+. +-..+....|.+.+.++..|.||.++++..+.+.++.+.++.. ....++++.+.|
T Consensus 634 kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~----vKP~IlS~FgDI 709 (859)
T KOG1241|consen 634 KYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRN----VKPAILSVFGDI 709 (859)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCcccccc----ccchHHHHHHHH
Confidence 99999999999999887654 3345556789999999999999999999999999988765433 234899999999
Q ss_pred HHHhhhhhhccchhhHHHHHHhcc-cccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHH
Q 000196 974 CLALNDEFRTHLPVILPCCIQVLS-DAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIET 1052 (1874)
Q Consensus 974 ~~~l~~~f~~yl~~llp~ll~~l~-~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~ 1052 (1874)
+.++|.+|.+|+..++|.+...-+ ..|.. + ....+|+ .++|+.++++
T Consensus 710 AlaIg~~F~~Yl~~vm~llq~as~~~~d~~-~---------------~~~~dYv----------------d~LRe~~lea 757 (859)
T KOG1241|consen 710 ALAIGADFEPYLEMVMPLLQQASSVQTDPA-D---------------DSMVDYV----------------DELREGILEA 757 (859)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhccCCCC-c---------------ccHHHHH----------------HHHHHHHHHH
Confidence 999999999999999998766542 11110 0 0111222 4556666666
Q ss_pred HHhhccc-------ccccchhHhHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHhccccccc
Q 000196 1053 LTRLIPR-------VQVTGHISSLVHHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIF 1106 (1874)
Q Consensus 1053 l~~l~~~-------~~~~~~~~~ii~~l~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~~ 1106 (1874)
...+..+ ..+.||+++|++.+-++-..++ ..+...|+..+++|+..+|++...|
T Consensus 758 y~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~ 820 (859)
T KOG1241|consen 758 YTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKL 820 (859)
T ss_pred HHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhh
Confidence 5555443 2256899999999888887654 4688999999999999999775543
No 10
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.7e-27 Score=272.87 Aligned_cols=537 Identities=20% Similarity=0.273 Sum_probs=397.4
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG 587 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~ 587 (1874)
...+++++...-.-|..++.++..-... +. ++.-..+.++.+++++++- +..+++.+|..++.+++
T Consensus 134 ~~~L~s~d~n~~EgA~~AL~KIcEDsa~------~l------ds~~~~rpl~~mipkfl~f-~~h~spkiRs~A~~cvN- 199 (885)
T KOG2023|consen 134 CELLDSPDYNTCEGAFGALQKICEDSAQ------FL------DSDVLTRPLNIMIPKFLQF-FKHPSPKIRSHAVGCVN- 199 (885)
T ss_pred HHHhcCCcccccchhHHHHHHHHhhhHH------HH------hhhcccCchHHhHHHHHHH-HhCCChhHHHHHHhhhh-
Confidence 3445555555555566666665432211 00 0001235578889999875 68899999999999986
Q ss_pred CCCcchh------hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 588 NRGFDDF------LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 588 ~~~f~~~------L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
.|... ..-..++..+|...+|++++||..++..+.-|.+..|..++|+++.++.-.+...+. .+....-+
T Consensus 200 --q~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd--~dE~VALE 275 (885)
T KOG2023|consen 200 --QFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQD--VDENVALE 275 (885)
T ss_pred --heeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccC--cchhHHHH
Confidence 22211 112357889999999999999999999999999999999999999876555554443 35557789
Q ss_pred HHHHHHHHHHh--CccccccchHHHHHHHHHHhhccC----------C----C---------------------------
Q 000196 662 SAKLLGCLIRN--CERLIRPYIAPIHKALVARLLEGT----------G----I--------------------------- 698 (1874)
Q Consensus 662 a~~~L~~l~~~--~~~~~~py~~~il~~ll~~l~~~~----------~----~--------------------------- 698 (1874)
||+.+..+++. +...+.||++.++++|+..+.-.+ + +
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDd 355 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDD 355 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccc
Confidence 99999999986 678899999999999998764210 0 0
Q ss_pred C----------CChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccccccc
Q 000196 699 N----------ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPY 768 (1874)
Q Consensus 699 ~----------~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~ 768 (1874)
+ .+.+++...+.+++.|+.+.|+++ ++.++|.+.+.|... .+.+|++++.+||.+++++-.-+.||
T Consensus 356 ddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el---L~~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~ 431 (885)
T KOG2023|consen 356 DDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL---LPILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPH 431 (885)
T ss_pred cccccccccccccccHhhccHHHHHHHHHhhHHHH---HHHHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccc
Confidence 0 125677788889999999988765 557788888888754 68999999999999999987766676
Q ss_pred ccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCC
Q 000196 769 NEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFA 848 (1874)
Q Consensus 769 ~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 848 (1874)
. |+|++.+++.|.+ +.+-||.-++++++..| +|. . ..
T Consensus 432 L--peLip~l~~~L~D-KkplVRsITCWTLsRys---~wv---~----------------------------------~~ 468 (885)
T KOG2023|consen 432 L--PELIPFLLSLLDD-KKPLVRSITCWTLSRYS---KWV---V----------------------------------QD 468 (885)
T ss_pred h--HHHHHHHHHHhcc-CccceeeeeeeeHhhhh---hhH---h----------------------------------cC
Confidence 4 8999999999964 46789988877777644 111 0 01
Q ss_pred CCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 000196 849 TSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928 (1874)
Q Consensus 849 ~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~ 928 (1874)
..++|+..+.. .|++.+-|.. ..++++++.|+..+-+..|...+||+..|+..+..+++.....-.-.+++++|++.+
T Consensus 469 ~~~~~f~pvL~-~ll~~llD~N-K~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 469 SRDEYFKPVLE-GLLRRLLDSN-KKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLAD 546 (885)
T ss_pred ChHhhhHHHHH-HHHHHHhccc-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHH
Confidence 12345555444 4444444543 246778888888888889999999999999999999987765545577899999999
Q ss_pred HHHHhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccc-------
Q 000196 929 IVRQHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDA------- 999 (1874)
Q Consensus 929 ~~~~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~------- 999 (1874)
.+|.+.. .|++-+++-+.+.|...+. + ++...+++.|+++++.+++..|.||.++++....+++.+.
T Consensus 547 svg~~Ln~~~YiqiLmPPLi~KW~~lsd--~--DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~ 622 (885)
T KOG2023|consen 547 SVGHALNKPAYIQILMPPLIEKWELLSD--S--DKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKV 622 (885)
T ss_pred HHHHhcCcHHHHHHhccHHHHHHHhcCc--c--cchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhc
Confidence 9999874 7999999999999986542 1 2234589999999999999999999999999988888621
Q ss_pred --cc---cCch---hhHHHHHHHHHH-Hhcchhhhhhh--hHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchh
Q 000196 1000 --ER---CNDY---TYVLDILHTLEV-FGGTLDEHMHL--LLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHI 1066 (1874)
Q Consensus 1000 --~~---~~~~---~~~~~il~~l~~-~g~~~~~~~~~--ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~ 1066 (1874)
+. ..++ .+++.+++.+.. +|+.+++.+.. ++..+...+.. ...+||++|...+|++++. ..+.|++
T Consensus 623 ~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D-~~peVRQS~FALLGDltk~c~~~v~p~~ 701 (885)
T KOG2023|consen 623 QQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD-EVPEVRQSAFALLGDLTKACFEHVIPNL 701 (885)
T ss_pred cCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHhccchH
Confidence 00 1122 224566666654 67766665532 44455555544 4688999999999999886 4467888
Q ss_pred HhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHh
Q 000196 1067 SSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1067 ~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~ 1116 (1874)
...+..+...++..+-...++|..++|.++.++|.+..+|++.|..-+.-
T Consensus 702 ~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~ 751 (885)
T KOG2023|consen 702 ADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLIT 751 (885)
T ss_pred HHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHH
Confidence 88888887777766678999999999999999999999998777765543
No 11
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.95 E-value=7.3e-23 Score=233.83 Aligned_cols=691 Identities=15% Similarity=0.157 Sum_probs=432.0
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHhhh--cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHH-------HHH----hh
Q 000196 52 EEQARDLGGEAFSRFMDQLYDRISGLL--ESNDAAENLGALRAIDELIDVALGENASKVSKFSN-------YMR----TV 118 (1874)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~l~~~i~~l~--~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~-------~L~----~~ 118 (1874)
|.++.+++...|.+|+.-+.+ .++ ++.+.-+-.+|+...++|+.-++....+...||.. +++ +.
T Consensus 26 E~ql~~l~~~dF~qf~~ll~q---vl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~a 102 (858)
T COG5215 26 EAQLLELQSGDFEQFISLLVQ---VLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRA 102 (858)
T ss_pred HHHHHHhccccHHHHHHHHHH---HHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 457889999999999877776 344 33444445678888899987764333444455542 332 23
Q ss_pred cccCCChHHHHHHHHHHHHHhhh--CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHH
Q 000196 119 FEVKRDREILVLASKVLGHLARA--GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEF 195 (1874)
Q Consensus 119 l~~~~d~~v~~~aa~~lg~l~~~--~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~-~p~~~~~~l~~i 195 (1874)
+. +.++.....|++.++.+|.- +.+.++++++..+..+- ++..++.+.+++.+++.+++. +|..+...-+.+
T Consensus 103 L~-s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg----~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~i 177 (858)
T COG5215 103 LK-SPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVG----DEQPVSGKCESLGICGYHCESEAPEDLIQMSNVI 177 (858)
T ss_pred hc-CCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhcc----ccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHH
Confidence 32 46789999999999999874 67788888777776654 456778899999999999998 676777777777
Q ss_pred HHHHHHhhc--CCchhHHHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc
Q 000196 196 VDAIWVALR--DPTLAVRERAVEALRACLRVIEKRE--TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT 271 (1874)
Q Consensus 196 l~~i~~~l~--D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~ 271 (1874)
+-.|..+-+ .+...||-+|..||-..+..+...- ..+++.+++.+++... . ++.+.+|++.-+|..+....
T Consensus 178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq----~-~d~e~q~aafgCl~kim~Ly 252 (858)
T COG5215 178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQ----G-NDEELQHAAFGCLNKIMMLY 252 (858)
T ss_pred HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhcc----C-CcHHHHHHHHHHHHHHHHHH
Confidence 777766543 6788999999999998666665421 1245555666655443 2 35788999888888877766
Q ss_pred hhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhh----------Ch------hhHHHHHHHHHHHHHHHhhcC
Q 000196 272 GEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHF----------LR------DRFVTNYLKICMNHILTVLRI 334 (1874)
Q Consensus 272 ~~~~~~~~~~i~~~l-l~~~~~~~~~vr~~~~~~i~~la~~----------~~------~~f~~~yl~~~~~~Ll~~L~~ 334 (1874)
-+||.+|+++.+..+ .+...+.+..|...+++-+..+++- .| ..|.......++|.|++.|.+
T Consensus 253 Y~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~ 332 (858)
T COG5215 253 YKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEK 332 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHh
Confidence 689999999866544 4556788999999999999888742 11 124444456688888888866
Q ss_pred CCC---------cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCC-CchHHHHHH
Q 000196 335 PAE---------RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVRGL 404 (1874)
Q Consensus 335 ~~~---------R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~-~~~p~l~~l 404 (1874)
..+ ..+|-.||..+++.+|+.+ +.++...+.+.+...+-+.++.+..+||.+...-.+ -++|++++.
T Consensus 333 q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i---~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qa 409 (858)
T COG5215 333 QGEDYYGDDWNPSMAASSCLQLFAQLKGDKI---MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQA 409 (858)
T ss_pred cCCCccccccchhhhHHHHHHHHHHHhhhHh---HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhh
Confidence 321 2478888888888888753 233555555555444334445667777766552111 144555554
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHH
Q 000196 405 LDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQL 484 (1874)
Q Consensus 405 l~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (1874)
+|-+.
T Consensus 410 lp~i~--------------------------------------------------------------------------- 414 (858)
T COG5215 410 LPGIE--------------------------------------------------------------------------- 414 (858)
T ss_pred hHHHH---------------------------------------------------------------------------
Confidence 44322
Q ss_pred HHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHH
Q 000196 485 ALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEK 564 (1874)
Q Consensus 485 Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~ 564 (1874)
T Consensus 415 -------------------------------------------------------------------------------- 414 (858)
T COG5215 415 -------------------------------------------------------------------------------- 414 (858)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHH
Q 000196 565 LLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHL 642 (1874)
Q Consensus 565 Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l 642 (1874)
..++|+..-|...+.+++|+++.+.|..+.|.- ....
T Consensus 415 -----------------------------------------n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v 453 (858)
T COG5215 415 -----------------------------------------NEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV 453 (858)
T ss_pred -----------------------------------------HhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence 111111112222222222222222211111100 0000
Q ss_pred HHHHHHHhhCCCChHhHHHHHHHHHHHHH-------hCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHH
Q 000196 643 IQLLTYLEQSSADNKCREESAKLLGCLIR-------NCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1874)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~~l~~-------~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1874)
...+..+.+ .++....++|.+..++. +.++.+.||...|+..|+...... ..+.+.+...+.++|.|
T Consensus 454 sa~liGl~D---~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~---~Ne~n~R~s~fsaLgtl 527 (858)
T COG5215 454 SASLIGLMD---CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA---LNESNLRVSLFSALGTL 527 (858)
T ss_pred HHHHhhhhc---cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHH
Confidence 011111211 12333334444444443 335667788889999888875432 13566778889999999
Q ss_pred HHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHH
Q 000196 716 ARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1874)
Q Consensus 716 a~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al 795 (1874)
....++...+.+..+.....+.| +..+..+|++...-.. ....++...++..
T Consensus 528 i~~~~d~V~~~~a~~~~~~~~kl---------~~~isv~~q~l~~eD~-----~~~~elqSN~~~v-------------- 579 (858)
T COG5215 528 ILICPDAVSDILAGFYDYTSKKL---------DECISVLGQILATEDQ-----LLVEELQSNYIGV-------------- 579 (858)
T ss_pred HhhcchhHHHHHHHHHHHHHHHH---------HHHHHHhhhhhhhHHH-----HHHHHHHHHHHHH--------------
Confidence 98887766665555444444333 2334445543321110 0011222222222
Q ss_pred HHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhH
Q 000196 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYH 875 (1874)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~ 875 (1874)
+.|+-.-+ + ++++. -.+.+++.++++|........|
T Consensus 580 -----l~aiir~~-------~-----------------~~ie~---------------v~D~lm~Lf~r~les~~~t~~~ 615 (858)
T COG5215 580 -----LEAIIRTR-------R-----------------RDIED---------------VEDQLMELFIRILESTKPTTAF 615 (858)
T ss_pred -----HHHHHHhc-------C-----------------CCccc---------------HHHHHHHHHHHHHhccCCchhh
Confidence 21110000 0 01110 1245778888888755455678
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCC
Q 000196 876 QKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLP 955 (1874)
Q Consensus 876 ~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~ 955 (1874)
..|..||..+..+++.+|..|++.++|-+...++..+.-+...+...+|.+...++..|++|.+.++..+.+.+....++
T Consensus 616 ~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~ 695 (858)
T COG5215 616 GDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATH 695 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhc
Confidence 89999999999999999999999999999999944443455667778899999999999999999999999988875533
Q ss_pred cccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCc--------hhhHHHHHHHHHHHhcchhhhhh
Q 000196 956 ATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCND--------YTYVLDILHTLEVFGGTLDEHMH 1027 (1874)
Q Consensus 956 ~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~--------~~~~~~il~~l~~~g~~~~~~~~ 1027 (1874)
. .+...++++.+.|+.++|.+|.+|+..++-++.+.-+- +...+ ......+..+++.+|....+.+.
T Consensus 696 R----~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~-~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~ 770 (858)
T COG5215 696 R----DLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASEL-DPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVR 770 (858)
T ss_pred c----ccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-CCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 2 23458999999999999999999999999877665431 11111 11123455566666666555555
Q ss_pred hhHHHHHHhh
Q 000196 1028 LLLPALIRLF 1037 (1874)
Q Consensus 1028 ~ilp~l~~~~ 1037 (1874)
.++|.+..++
T Consensus 771 ~v~Pyv~sif 780 (858)
T COG5215 771 SVLPYVISIF 780 (858)
T ss_pred HhhhHHHHHH
Confidence 5555554433
No 12
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3.5e-25 Score=293.25 Aligned_cols=616 Identities=18% Similarity=0.217 Sum_probs=385.8
Q ss_pred CCCChhhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHhhChhHHHHhhhHHHHHHHHhhcHH---HHHHHHHHHH-HH
Q 000196 1185 QRSTKEDWAEWMRHLSIELLKES----PSPALRTCARLAQLQPFVGRELFAAGFVSCWSQLNAT---SQKHLVQSLE-MA 1256 (1874)
Q Consensus 1185 ~~~~~~~w~~W~~~~~~~ll~~s----ps~~ir~c~~La~~~~~la~~Lf~~aF~s~w~~l~~~---~~~~l~~~l~-~~ 1256 (1874)
+..+.+.|..|+..++..++... +-.. +..++--....+-.-|.+|....++. ........|. .+
T Consensus 1617 ~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~-------~st~~~~~~t~i~~~i~~~l~~~s~~~~~~~~~~~~yi~~~~ 1689 (2806)
T KOG0892|consen 1617 QQTNNESLSNWLSEFALKLFNMCGRSSTTHS-------LSTYMANFSTSICQLIICLLLLESDFNPGNNLKQKDYIFELI 1689 (2806)
T ss_pred hhhhccchhhHHHHHHHHHHHHHhccCCchh-------hccccccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 45678899999999998876541 2121 12233333333444445555444443 2222333332 23
Q ss_pred hCCC-CCChHHHHHHHHHHHHhhhCCC-----------CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCc
Q 000196 1257 FSSP-NIPPEILATLLNLAEFMEHDEK-----------PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP 1324 (1874)
Q Consensus 1257 l~~~-~~p~~i~~~ll~l~e~m~~~~~-----------~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~ 1324 (1874)
+.+- ....++..+-+|+.++..++.. .++++.......+.+|..|...+.+.-.+.... ...
T Consensus 1690 ~~sl~~n~~~~~~m~~ni~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k~------k~~ 1763 (2806)
T KOG0892|consen 1690 LSSLLKNSNSIFKMDMNILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPKN------KRD 1763 (2806)
T ss_pred hhccccchhHHHHHHHHHHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCccc------chh
Confidence 3332 2335688888999999877543 356666677777778888877776654433211 112
Q ss_pred HHHHHHHHHH----HhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHH
Q 000196 1325 VAVVEALIHI----NNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRC 1400 (1874)
Q Consensus 1325 ~~~~e~L~~i----y~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~c 1400 (1874)
...+..|+++ |.++|+||+.+|+........ .++ .-+|+.++|..|+..|+-.- ..+. .+...|.++.
T Consensus 1764 e~~~~~lqDil~~~y~~I~~pD~lyG~~~~~~~~~-~~l--~~~~he~~w~~aL~~~d~~~-~~~s----s~~~~~~~~s 1835 (2806)
T KOG0892|consen 1764 ELDITLLQDILKKAYESINCPDALYGIKRPTSLKN-LIL--ITAEHEKNWPRALSYYDLAD-MYPS----SEDEAGFINS 1835 (2806)
T ss_pred HHHHHHHHHHHHHHHhhCCCcchhcccCCcccccc-ccc--chhhhhhhHHHHHHhhcchh-hccc----hHhHhHHHHH
Confidence 3444555555 999999999999987543322 222 23899999999999998653 2222 2455999999
Q ss_pred HHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhh---cCCCCcchhhccccccccCCCCCch
Q 000196 1401 LAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSR---LDDGDESKLRGLGNTAANGDGSSNG 1477 (1874)
Q Consensus 1401 l~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 1477 (1874)
|.+.|.-.-+.-+.++.|.. +..++......-++|||++|+||....+... .. ++. .+ .
T Consensus 1836 Lq~~g~~~I~~~y~~Gl~~~-~~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~~~~~~-~~~--y~--------------e 1897 (2806)
T KOG0892|consen 1836 LQNAGFFHILEFYIDGLKSN-DKIDEPSNEELVYEAAWRLGKWDILTLSLVDQNKTK-GDY--YH--------------E 1897 (2806)
T ss_pred HHHhcchhHHHHHhcChhhh-hhhhhhhhhhhhHHHHHhcCCcccCCcchhhhhhhh-chh--HH--------------H
Confidence 99999988888888887754 2455555556778999999999998776622 11 110 00 1
Q ss_pred HHHHHHHHHHhcC----------------------hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHH
Q 000196 1478 TFFRAVLLVRRGK----------------------VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIR 1535 (1874)
Q Consensus 1478 ~f~~a~~~i~~~~----------------------~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~ 1535 (1874)
..|.+..+++... ..|+-.--|..+.++|.+.++|-+.+.--.... +.....+.
T Consensus 1898 ~~f~~l~al~ere~e~~yl~le~a~~~~v~~i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~~~~----~~~~~~~~ 1973 (2806)
T KOG0892|consen 1898 SLFEALRALHEREIEGSYLHLEDARNKKVLLINPNSEESSLSFYATLYDLQFLVTLEPIRCLQSTADK----HQSNTDIL 1973 (2806)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhhhcc----hhhhhHHH
Confidence 1233333333321 345666679999999999999999874432111 23334566
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhhcCCc-----------ccHHH-----HHHHHHHHHhcCChhHHHH---HHHHHh
Q 000196 1536 NMWTERIQGTKRNVEVWQALLAVRALVLPPT-----------EDVET-----WLKFASLCRKSGRISQARS---TLVKLL 1596 (1874)
Q Consensus 1536 ~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~-----------e~~~~-----wlk~a~laRk~g~~~~a~~---~L~~l~ 1596 (1874)
-.|++-++...+.++..+..+.-|+.+++.. ++... -+....++|.....+.-.+ ++....
T Consensus 1974 ~k~~t~~q~~~~~~~~~~~~~~d~n~l~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~ 2053 (2806)
T KOG0892|consen 1974 QKWKTNLQLSSQLMECLSLLIEDRNVLLSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIARAFPVIM 2053 (2806)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHHhhHHHH
Confidence 7788888888888888888888888776522 11100 1122233333332222222 111111
Q ss_pred cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHH
Q 000196 1597 QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYL 1676 (1874)
Q Consensus 1597 ~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 1676 (1874)
... .-...++.+...|+.+.. +..+++-.....-++..- ..+. ........+.....|+.
T Consensus 2054 ~~~------------~~~~~~s~aq~~~k~~~~-~~~e~iL~~~~~kne~~~--~~s~-----~~~~~~~lk~~~~~~~a 2113 (2806)
T KOG0892|consen 2054 LSI------------KLLCKFSLAQENLKHDID-KLSEAILWQRDEKNEAII--SLSE-----SLAKNNSLKEFPSDIYA 2113 (2806)
T ss_pred HHH------------HHHhhhhhhhhhccchhh-hhHHHHHHHHHhhhhHHH--HHHh-----hhhhcchhhhhHHHHHH
Confidence 100 011122333344444332 112222111111000000 0000 00001112355678999
Q ss_pred HHhhhHhhcCCCCCCCCHHHHHHHHHH-HHhhcccc------------hHHHHHHHHHHHHHHHhhhcc-----------
Q 000196 1677 KLGSWKRALPPGLDDESIPEIIAAYRN-ATQCATKW------------GKAWHSWALFNTAVMSHYTLR----------- 1732 (1874)
Q Consensus 1677 ~~g~w~~~~~~~~~~~~~~~i~~~y~~-a~~~~~~~------------~k~w~~wA~~n~~~~~~~~~~----------- 1732 (1874)
.+|+|..+++ .+....|++.|.. |.....++ .++|.+.|+|-|..+...+.+
T Consensus 2114 ~~g~Wlaetk----~ens~~i~e~yl~~a~~~ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~ 2189 (2806)
T KOG0892|consen 2114 VLGKWLAETK----SENSALISEKYLEKAVSLAEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKD 2189 (2806)
T ss_pred HHHHHHHHhh----ccchhhhHHHHHHHHHHHhhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHH
Confidence 9999999886 3566777777754 43332221 368888888877665432210
Q ss_pred -------C--------------------------------CCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000196 1733 -------G--------------------------------LPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1874)
Q Consensus 1733 -------~--------------------------------~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlL 1773 (1874)
+ .+..+.+|+..|++||++++..+ .+|...-+.|..
T Consensus 2190 l~k~~~~~~~~~~er~~q~~~~~~~~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~-----~~~D~~~i~R~c 2264 (2806)
T KOG0892|consen 2190 LQKLERSTVEASNEREEQMRKNHHVRVQRQLILDEEELLALSEDRSKFLTLALTNYLNCLSES-----DEYDVDLIFRCC 2264 (2806)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHhhc-----ccccHHHHHHHh
Confidence 0 01245679999999999999885 567777899999
Q ss_pred HHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCC---
Q 000196 1774 TLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIH-SNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSI--- 1849 (1874)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~-~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~--- 1849 (1874)
++||++.+..++++.+++.+.+||+|+|++|+.||.||++ ..+..+++.+..|+.+++++||+|++|.|+......
T Consensus 2265 slWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~ 2344 (2806)
T KOG0892|consen 2265 SLWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDN 2344 (2806)
T ss_pred hhhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcCh
Confidence 9999999999999999999999999999999999999999 688899999999999999999999999999876322
Q ss_pred ----------cHHHHHHHHHHHHHHhhccCccc
Q 000196 1850 ----------SNLRRAAAQEVVDKVRQHSGTTR 1872 (1874)
Q Consensus 1850 ----------~~~R~~~a~~Il~~~~~~~~~l~ 1872 (1874)
+..|+.+|+.++...+.-.|.+|
T Consensus 2345 e~~n~sr~sl~~~rki~a~l~~~~v~~~~~~~v 2377 (2806)
T KOG0892|consen 2345 EDENRSRGSIDRDRKIAAELDLCDVNQGAGNMV 2377 (2806)
T ss_pred hhhhhcccccchhHHHHHHHhhhHhhccchhHH
Confidence 25677888888888777766655
No 13
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.94 E-value=1.2e-20 Score=227.68 Aligned_cols=802 Identities=17% Similarity=0.185 Sum_probs=492.7
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcch
Q 000196 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET 230 (1874)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1874)
...++-++..| +|++.....-|+..++-++...|. -++..+++.+..++-......|+.+.-+|......+.-...
T Consensus 46 ~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsKvke---~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~ 121 (1233)
T KOG1824|consen 46 RKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSKVKE---DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSS 121 (1233)
T ss_pred hHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhhchH---HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccc
Confidence 33455555555 455556677788888888854443 47778888888887777778888888888876554431111
Q ss_pred -hhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000196 231 -RWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1874)
Q Consensus 231 -~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~l 308 (1874)
.......+.+.+.+..++....+ ..++--++-.++.++...|+++.+.-..+...++..+.+....||+.++.+|+.+
T Consensus 122 ~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~l 201 (1233)
T KOG1824|consen 122 SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHL 201 (1233)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHH
Confidence 12334566777777776654332 2356667778888888788888775555677777777888899999999999999
Q ss_pred hhhChhhHHHHHHHHHHHHHHHhhcCCC---CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCC---CCCCCchh
Q 000196 309 AHFLRDRFVTNYLKICMNHILTVLRIPA---ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR---RGKPSLEA 382 (1874)
Q Consensus 309 a~~~~~~f~~~yl~~~~~~Ll~~L~~~~---~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~---~~~~~~~a 382 (1874)
|.+.+.. .+..++.+|+.-|.+.. .-....+|||.++++.|.++..+++.+++.+.++.... +.+.++..
T Consensus 202 a~~~~~~----ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~ 277 (1233)
T KOG1824|consen 202 ASSCNRD----LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYC 277 (1233)
T ss_pred HHhcCHH----HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHH
Confidence 9988763 23677888888776542 23478899999999999999999999999999988433 22334678
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 000196 383 LACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPI 462 (1874)
Q Consensus 383 ~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~ 462 (1874)
+++++.+......++.||.++++..+++ .|+ |+|
T Consensus 278 lQale~fl~rcp~ei~p~~pei~~l~l~-------------------------------yis-------YDP-------- 311 (1233)
T KOG1824|consen 278 LQALESFLRRCPKEILPHVPEIINLCLS-------------------------------YIS-------YDP-------- 311 (1233)
T ss_pred HHHHHHHHHhChhhhcccchHHHHHHHH-------------------------------Hhc-------cCC--------
Confidence 8999999988888888998887776442 221 111
Q ss_pred CCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC--ChHHHHHHHHHhHHhhhccCCCCccc
Q 000196 463 RGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE--DKATRKDAALCCCKLVANSFSGVSFT 540 (1874)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~--~~~VR~aAa~~~~~l~~~~~~~~~~~ 540 (1874)
+. ..+++|. ++ + +++..-+. + + .-..|-|++ .+.||+||++++..++..-.+
T Consensus 312 --Ny---~yd~~eD-ed-----~-~~~ed~eD--d---e----~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E----- 365 (1233)
T KOG1824|consen 312 --NY---NYDTEED-ED-----A-MFLEDEED--D---E----QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLE----- 365 (1233)
T ss_pred --CC---CCCCccc-hh-----h-hhhhcccc--c---h----hccccccccchhHHHHHHHHHHHHHHHhccHH-----
Confidence 00 0000000 00 0 00000000 0 0 012555544 589999999998888753221
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc----CCC-----------------Ccch-hhc--
Q 000196 541 QFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY----GNR-----------------GFDD-FLA-- 596 (1874)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~----~~~-----------------~f~~-~L~-- 596 (1874)
........+-+.++. -+.|.++.|+..++.++- ... .++. +|.
T Consensus 366 ------------~L~~~~q~l~p~lI~-RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~ 432 (1233)
T KOG1824|consen 366 ------------MLPDFYQTLGPALIS-RFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQ 432 (1233)
T ss_pred ------------HHHHHHHHhCHHHHH-HHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhh
Confidence 122233333333443 368889999988777641 001 1111 121
Q ss_pred cHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHH-HHHHHHHhCcc
Q 000196 597 QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAK-LLGCLIRNCER 675 (1874)
Q Consensus 597 ~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~-~L~~l~~~~~~ 675 (1874)
.+.+++.+-..+.+.+-..|..++..|..+....|....+++...+.-....+.+-+.....+..++. +.+.++.+.++
T Consensus 433 ~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~ 512 (1233)
T KOG1824|consen 433 VPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPE 512 (1233)
T ss_pred hHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChh
Confidence 23456666666677777789999999999999999877666665555555544332123334445544 44556677889
Q ss_pred ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc-------ccchhhcHHhHHHHHHHHHhcC-cchhhH
Q 000196 676 LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-------GFGMRQYISELMPLIVEALLDG-AAVTKR 747 (1874)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-------g~~~~~~~~~llp~l~~~l~d~-~~~~~r 747 (1874)
.|.||+..+.+.++....++ .+.+...++.+.+.+..+. +-+..||+.+++...++.|... .+.++|
T Consensus 513 ~fhp~~~~Ls~~v~~aV~d~-----fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVk 587 (1233)
T KOG1824|consen 513 VFHPHLSALSPPVVAAVGDP-----FYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVK 587 (1233)
T ss_pred hcccchhhhhhHHHHHhcCc-----hHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHH
Confidence 99999999999999998875 7888888888888888754 3467899999999999988632 367899
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCC
Q 000196 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAAS 827 (1874)
Q Consensus 748 ~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~ 827 (1874)
+.|+.++|+++...|+... .+.|..++.++.-++++ .+|..|+|++..+.. .|...
T Consensus 588 eraIscmgq~i~~fgD~l~--~eL~~~L~il~eRl~nE---iTRl~AvkAlt~Ia~-S~l~i------------------ 643 (1233)
T KOG1824|consen 588 ERAISCMGQIIANFGDFLG--NELPRTLPILLERLGNE---ITRLTAVKALTLIAM-SPLDI------------------ 643 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhh--hhhHHHHHHHHHHHhch---hHHHHHHHHHHHHHh-cccee------------------
Confidence 9999999999999997644 34688999999998866 689999999887642 11110
Q ss_pred CCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCC-ccchhHHHHH
Q 000196 828 DSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY-LPKVLPDLFH 906 (1874)
Q Consensus 828 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~-l~~ilp~ll~ 906 (1874)
+ + .+. .+-+++.|...++-.. .....+...++..++++.+....++ ++.++-.+..
T Consensus 644 ---------~-----l---~~~-----l~~il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~ 700 (1233)
T KOG1824|consen 644 ---------D-----L---SPV-----LTEILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPP 700 (1233)
T ss_pred ---------e-----h---hhh-----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhh
Confidence 0 0 010 1223333333332211 1223345666667777776655433 3444444444
Q ss_pred HHhcCCcchhHHHHHHHHHHHHHH----HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh
Q 000196 907 TVRTCDDYLKDYITWKLGTLVSIV----RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982 (1874)
Q Consensus 907 ~l~~~~~~~~~~~~~~l~~lv~~~----~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~ 982 (1874)
.+..++-.+-+.++..+.++...- -.+-.+++++|+..+.. +-++.. . ...++....+++..-..++.
T Consensus 701 Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S----pllqg~---a-l~~~l~~f~alV~t~~~~l~ 772 (1233)
T KOG1824|consen 701 LISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS----PLLQGG---A-LSALLLFFQALVITKEPDLD 772 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC----ccccch---H-HHHHHHHHHHHHhcCCCCcc
Confidence 444443334445555555554322 23345667776666543 222110 0 01233333333333333333
Q ss_pred ccchhhHHHHHHhccccccc-----CchhhHHHHHHHHHHHhcchhhhhhhhHHHH-HHhhcCCCcHHHHHHHHHHHHhh
Q 000196 983 THLPVILPCCIQVLSDAERC-----NDYTYVLDILHTLEVFGGTLDEHMHLLLPAL-IRLFKVDAPVDIRRAAIETLTRL 1056 (1874)
Q Consensus 983 ~yl~~llp~ll~~l~~~~~~-----~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l-~~~~~~~~~~~vr~~ai~~l~~l 1056 (1874)
| -.++..+..+-.. ..+..-..+-.|...+.....+--..+.-.+ .++........+|.-|+-++|++
T Consensus 773 -y-----~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl 846 (1233)
T KOG1824|consen 773 -Y-----ISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGEL 846 (1233)
T ss_pred -H-----HHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhh
Confidence 3 3344444332110 1111111222222222222222222222222 33333346788999999999999
Q ss_pred cccccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHH
Q 000196 1057 IPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLL 1115 (1874)
Q Consensus 1057 ~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~ 1115 (1874)
.+..+.++.. .+-..++..+++++++++.+|-.+||.+.. | ....|+|-|...+.
T Consensus 847 gr~~~~s~~~-e~~~~iieaf~sp~edvksAAs~ALGsl~v--g-nl~~yLpfil~qi~ 901 (1233)
T KOG1824|consen 847 GRRKDLSPQN-ELKDTIIEAFNSPSEDVKSAASYALGSLAV--G-NLPKYLPFILEQIE 901 (1233)
T ss_pred ccCCCCCcch-hhHHHHHHHcCCChHHHHHHHHHHhhhhhc--C-chHhHHHHHHHHHh
Confidence 9987765532 223355688999999999999999999976 1 23345555555443
No 14
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.93 E-value=1.7e-19 Score=217.88 Aligned_cols=918 Identities=15% Similarity=0.168 Sum_probs=539.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHcCCC---CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHH----HHHHHhhhcCCChh
Q 000196 12 GPPAPGAGGGSLDALNRILADLCTHG---NPKEGASLALRKHIEEQARDLGGEAFSRFMDQL----YDRISGLLESNDAA 84 (1874)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~L~s~~---~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l----~~~i~~l~~s~~~~ 84 (1874)
+|| -....-++.++.++...|++.. ++..++--+..+++...+.. |..+++.. ...+.--+.++-..
T Consensus 116 l~P-~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr-----~g~ll~~fh~~il~~l~~ql~s~R~a 189 (1233)
T KOG1824|consen 116 LPP-SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR-----FGTLLPNFHLSILKCLLPQLQSPRLA 189 (1233)
T ss_pred CCC-ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh-----hcccCcchHHHHHHHHhhcccChHHH
Confidence 677 4556778889999999998764 33333333333443333222 22222222 23233335677778
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc--
Q 000196 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-- 162 (1874)
Q Consensus 85 ~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-- 162 (1874)
.|+.++.|++.|.....++ ........|..=+++.......+.--++++.++...|.....+.++.++.+.+|..
T Consensus 190 VrKkai~~l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~ 266 (1233)
T KOG1824|consen 190 VRKKAITALGHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI 266 (1233)
T ss_pred HHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhccc
Confidence 8899999999997654222 11222333333333334567778888999999998777777777888888888874
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~ 241 (1874)
++.++..|...+++++.+.+.||.-+.||.+.|+..++..+. ||+..=-.. -+--.+.++. .+...+
T Consensus 267 e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~-eDed~~~~ed---~eDde~-------- 334 (1233)
T KOG1824|consen 267 EEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTE-EDEDAMFLED---EEDDEQ-------- 334 (1233)
T ss_pred ccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCc-cchhhhhhhc---cccchh--------
Confidence 445567999999999999999999999999999999999986 887532110 1111111111 111110
Q ss_pred HHHHhhccCCC--ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC-------
Q 000196 242 EATQDGLGRNA--PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL------- 312 (1874)
Q Consensus 242 ~~~~~~l~~~~--~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~------- 312 (1874)
.+.-.|.+ +|.+|.+|+.++..++....|.+...+..++..+.+.++.|++.|+..++++.-.+-...
T Consensus 335 ---~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 335 ---DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred ---ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccc
Confidence 01112222 499999999999999998888888889999999999999999999999887765543111
Q ss_pred ---------hhhHHHHHHHHHHHHHHHhhcC------CCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCC
Q 000196 313 ---------RDRFVTNYLKICMNHILTVLRI------PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGK 377 (1874)
Q Consensus 313 ---------~~~f~~~yl~~~~~~Ll~~L~~------~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~ 377 (1874)
+..|-..++.+..+.+.+.+.+ -+.|..+|..|.++....++.+.++++.+++.|.-.|.+++..
T Consensus 412 ~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 1112235777777777766643 2356789999999999999889999999999999999876543
Q ss_pred C--CchhHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCC
Q 000196 378 P--SLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQ 454 (1874)
Q Consensus 378 ~--~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~ 454 (1874)
. ...++.++..+....|+ .|.|++..+.+++..+--.+...-+..++. +...+.+.|. +..
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~---------v~~~lvkvir------pl~- 555 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALL---------VCQQLVKVIR------PLQ- 555 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHH---------HHHHHHHHhc------ccC-
Confidence 2 24566666665555565 799999998888775422222111111100 0001111110 000
Q ss_pred CCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHH---HHHhhhcc--CCChHHHHHHHHHhHHh
Q 000196 455 ARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFAR---DSVVLYLD--DEDKATRKDAALCCCKL 529 (1874)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~---~~~~~~l~--~~~~~VR~aAa~~~~~l 529 (1874)
++ ..|+ ..||+. ++.+..+. +.+.+||..|..+++.+
T Consensus 556 --~~-------------------------------~~~d-----~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~ 597 (1233)
T KOG1824|consen 556 --PP-------------------------------SSFD-----ASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQI 597 (1233)
T ss_pred --CC-------------------------------ccCC-----CChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 00 0111 123333 34444443 45789999999888888
Q ss_pred hhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC----CCCcc--hhhccHhhHHH
Q 000196 530 VANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG----NRGFD--DFLAQADCLSA 603 (1874)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~----~~~f~--~~L~~~~~l~~ 603 (1874)
+..... ....-+..+++.+++....|+ .|.+++.+++. .-.++ +.| .++++-
T Consensus 598 i~~fgD-----------------~l~~eL~~~L~il~eRl~nEi---TRl~AvkAlt~Ia~S~l~i~l~~~l--~~il~~ 655 (1233)
T KOG1824|consen 598 IANFGD-----------------FLGNELPRTLPILLERLGNEI---TRLTAVKALTLIAMSPLDIDLSPVL--TEILPE 655 (1233)
T ss_pred HHHHhh-----------------hhhhhhHHHHHHHHHHHhchh---HHHHHHHHHHHHHhccceeehhhhH--HHHHHH
Confidence 764321 022335566667776655443 67777777641 11122 112 245555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHH
Q 000196 604 IFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1874)
Q Consensus 604 L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1874)
+...+.......|.+....+..|.+.....+.+++-+.++.-+..+-.. .+.+.-+.|..++..++...+..+.....+
T Consensus 656 l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise-sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~ 734 (1233)
T KOG1824|consen 656 LASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE-SDLHVTQLAVAFLTTLAIIQPSSLLKISNP 734 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHhcccHHHHHHhhh
Confidence 5555554455678888888888888876666666655444444444333 466777889999999998887777777778
Q ss_pred HHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC----cchhhHHHH----HHHHH
Q 000196 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG----AAVTKREVA----VSTLG 755 (1874)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~----~~~~~r~~A----~~~Lg 755 (1874)
+++.++..++.+.. ........+..+..+.....+.+. |. .++..++.+ ........| ..+.+
T Consensus 735 iL~~ii~ll~Spll---qg~al~~~l~~f~alV~t~~~~l~-y~-----~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA 805 (1233)
T KOG1824|consen 735 ILDEIIRLLRSPLL---QGGALSALLLFFQALVITKEPDLD-YI-----SLLSLLTAPVYEQVTDGLHKQAYYSIAKCVA 805 (1233)
T ss_pred hHHHHHHHhhCccc---cchHHHHHHHHHHHHHhcCCCCcc-HH-----HHHHHHcCCcccccccchhHHHHHHHHHHHH
Confidence 88888888875421 111112222222233333223332 22 233333321 111122233 34444
Q ss_pred HHHhhccccccccccchHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCC
Q 000196 756 QVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQ 834 (1874)
Q Consensus 756 ~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~-~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (1874)
.++..++.+ -+.+...+..-+.+. .+..+|.-|+-.+|.+|--.+.
T Consensus 806 ~Lt~~~~~~------s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--------------------------- 852 (1233)
T KOG1824|consen 806 ALTCACPQK------SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--------------------------- 852 (1233)
T ss_pred HHHHhcccc------chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC---------------------------
Confidence 444444432 234566665555433 3567787788888888721000
Q ss_pred CccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcc
Q 000196 835 PMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDY 914 (1874)
Q Consensus 835 ~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~ 914 (1874)
....+ |+++++ ..++.|+. +...++..|++.+ + +--++.++|.++..+.+. |.
T Consensus 853 -------------s~~~e-~~~~ii----eaf~sp~e-dvksAAs~ALGsl----~---vgnl~~yLpfil~qi~sq-pk 905 (1233)
T KOG1824|consen 853 -------------SPQNE-LKDTII----EAFNSPSE-DVKSAASYALGSL----A---VGNLPKYLPFILEQIESQ-PK 905 (1233)
T ss_pred -------------Ccchh-hHHHHH----HHcCCChH-HHHHHHHHHhhhh----h---cCchHhHHHHHHHHHhcc-hH
Confidence 00111 334444 44655542 3333444444433 2 345677888888887764 33
Q ss_pred hhHHHHHHHHHHHHHHH-HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHH
Q 000196 915 LKDYITWKLGTLVSIVR-QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCI 993 (1874)
Q Consensus 915 ~~~~~~~~l~~lv~~~~-~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll 993 (1874)
.+..++..|-.++.... ..++||++.|..++........ +.+| ..+-.|++.++.. -=..++|.+-
T Consensus 906 ~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e--egtR----~vvAECLGkL~l~-------epesLlpkL~ 972 (1233)
T KOG1824|consen 906 RQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE--EGTR----NVVAECLGKLVLI-------EPESLLPKLK 972 (1233)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch--hhhH----HHHHHHhhhHHhC-------ChHHHHHHHH
Confidence 34445555555544332 3468999999999988766443 1222 1334444444332 2256778777
Q ss_pred HhcccccccCchhhHHHHHHHHHH-HhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc-c-ccchhHhHH
Q 000196 994 QVLSDAERCNDYTYVLDILHTLEV-FGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV-Q-VTGHISSLV 1070 (1874)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~~-~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~-~-~~~~~~~ii 1070 (1874)
..+.... +..|..+..++....+ =..-+++++...+...+.+++.+ +.+||+.|+.++...+..- + +.+.++.+.
T Consensus 973 ~~~~S~a-~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpslIrDllpeLL 1050 (1233)
T KOG1824|consen 973 LLLRSEA-SNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSLIRDLLPELL 1050 (1233)
T ss_pred HHhcCCC-cchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhHHHHHHHHHH
Confidence 7775422 2223332222111111 12235666666677777777654 7899999999998877651 1 233444444
Q ss_pred HH----------HHHHhCCC--------CHHHHHHHHHHHHHHHHHhc--cccccchhhHHHHH
Q 000196 1071 HH----------LKLVLDGK--------NDELRKDAVDALCCLAHALG--EDFTIFIPSIHKLL 1114 (1874)
Q Consensus 1071 ~~----------l~~~l~~~--------~~~l~~~al~~L~~l~~~~g--~~f~~~ip~i~~~l 1114 (1874)
+. ++|.+.-+ .-++|+.|++|+.+|..+.- .+...|+.-+...+
T Consensus 1051 p~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL 1114 (1233)
T KOG1824|consen 1051 PLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGL 1114 (1233)
T ss_pred HHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhc
Confidence 43 44444322 24799999999999998732 34445555443333
No 15
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.2e-20 Score=224.64 Aligned_cols=584 Identities=13% Similarity=0.177 Sum_probs=391.4
Q ss_pred HHHHHhhcccccCCCcchhhHHHHHhhhccCC-ChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHH
Q 000196 483 QLALQTLARFNFKGHDLLEFARDSVVLYLDDE-DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1874)
Q Consensus 483 ~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~-~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1874)
..++..+.++..+.....+++...+ .-..++ ...+++++..+++-+...... .-..+..+.+
T Consensus 111 aq~va~IA~~ElP~n~wp~li~~lv-~nv~~~~~~~~k~~slealGyice~i~p----------------evl~~~sN~i 173 (859)
T KOG1241|consen 111 AQCVAAIACIELPQNQWPELIVTLV-SNVGEEQASMVKESSLEALGYICEDIDP----------------EVLEQQSNDI 173 (859)
T ss_pred HHHHHHHHHhhCchhhCHHHHHHHH-HhcccccchHHHHHHHHHHHHHHccCCH----------------HHHHHHHhHH
Confidence 3344445555443333334444333 333333 335888777777765431110 0133445666
Q ss_pred HHHHHHHHh-cCCChhHHHHHHHhccCC-----CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc
Q 000196 562 VEKLLIAAV-ADADVTVRHSIFSSLYGN-----RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL 635 (1874)
Q Consensus 562 l~~Ll~~~~-~d~~~~vR~~~l~~l~~~-----~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~ 635 (1874)
+..++..+. .+++..||.+++.+|-.+ ..|.......-+++.+..+-+-++.+||.+|+.+|.++...+-.+..
T Consensus 174 LtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~ 253 (859)
T KOG1241|consen 174 LTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFME 253 (859)
T ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655444 578999999999988421 12322111111345555566778899999999999999998866666
Q ss_pred hHHHHHHHH-HHHHHhhCCCChHhHHHHHHHHHHHHHh-------Cccccc----c----c----hHHHHHHHHHHhhc-
Q 000196 636 PALRRHLIQ-LLTYLEQSSADNKCREESAKLLGCLIRN-------CERLIR----P----Y----IAPIHKALVARLLE- 694 (1874)
Q Consensus 636 p~l~~~l~~-~l~~l~~~~~~~~~r~~a~~~L~~l~~~-------~~~~~~----p----y----~~~il~~ll~~l~~- 694 (1874)
|++.+.|.. .+..+. + ++.+..-++.+..+.+++. .++.+. | | +..+++.|+..+..
T Consensus 254 ~yM~~alfaitl~amk-s-~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kq 331 (859)
T KOG1241|consen 254 PYMEQALFAITLAAMK-S-DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQ 331 (859)
T ss_pred HHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhC
Confidence 777664433 444454 4 4667777888887766531 122211 2 1 23566666666653
Q ss_pred -cCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc-ccccccch
Q 000196 695 -GTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYP 772 (1874)
Q Consensus 695 -~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~-i~p~~~~p 772 (1874)
++..+.+++..-++-.||..+|+..|+++.| .++|.+-+.++.+ ++..|++|+.++|.+..+-... ..|+. +
T Consensus 332 de~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~---~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV--~ 405 (859)
T KOG1241|consen 332 DEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP---HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV--I 405 (859)
T ss_pred CCCcccccCcHHHHHHHHHHHHHHHhcccchh---hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH--h
Confidence 2222345677778888999999999998877 6788888888876 7999999999999988765433 45543 6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCcc
Q 000196 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1874)
Q Consensus 773 ~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1874)
+.++.+++.+. +++--+|..+-+++|.+.-.-|.. ...+
T Consensus 406 qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e~----------------------------------------~~n~ 444 (859)
T KOG1241|consen 406 QALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPEA----------------------------------------IINQ 444 (859)
T ss_pred hhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchhh----------------------------------------cccH
Confidence 78889998887 557788999999999875222210 0112
Q ss_pred chHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHh----CC-----CCCCCccchhHHHHHHHhcC---CcchhHHHH
Q 000196 853 YYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM----GL-----GCVPYLPKVLPDLFHTVRTC---DDYLKDYIT 920 (1874)
Q Consensus 853 ~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~----~~-----~~~~~l~~ilp~ll~~l~~~---~~~~~~~~~ 920 (1874)
-+...++.+|+.-|.|..- .-..++-|+..+.+.. .. ..-||.+.|+..++..-... +.++|..++
T Consensus 445 ~~l~~~l~~l~~gL~DePr--va~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAY 522 (859)
T KOG1241|consen 445 ELLQSKLSALLEGLNDEPR--VASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAY 522 (859)
T ss_pred hhhhHHHHHHHHHhhhCch--HHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHH
Confidence 2346678889999987642 2335677777777542 11 12367788888888775542 346899999
Q ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCC----CCCcccc---cccchhHHHHHHHHHHHhhhhhhccchhhHHHHH
Q 000196 921 WKLGTLVSIVRQHIRKYLQELFSLISELWSSF----SLPATNR---TYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCI 993 (1874)
Q Consensus 921 ~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~----~~~~~~~---~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll 993 (1874)
.+|+.+|....+...|-+..+...+.+.++.. -+.-++| .+++..+..++..+-..++.++.++.+.+|..++
T Consensus 523 eALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lfl 602 (859)
T KOG1241|consen 523 EALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFL 602 (859)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHH
Confidence 99999999887777666655555554433211 0000111 1233455667777777888899999999999999
Q ss_pred HhcccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHH
Q 000196 994 QVLSDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLV 1070 (1874)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii 1070 (1874)
+.|+...+..-.+.+.-.+.++. .+|..|..|+..+.|.+..-++.-..-.|..+|++.+|+|++. .++.||...++
T Consensus 603 ri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~m 682 (859)
T KOG1241|consen 603 RIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELM 682 (859)
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 99976222212233444445554 4899999999999999999886555677889999999999998 56899999999
Q ss_pred HHHHHHhCCCC--HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCCCC-----chhHHHHHHHHhcC
Q 000196 1071 HHLKLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLR-----HKEFEEIEGRLRRR 1134 (1874)
Q Consensus 1071 ~~l~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~~~-----~~~~~~~~~~~~~~ 1134 (1874)
..|+..|++++ .++|..++.++++++..+|.+|.+|+..|+..|.+.... +.....++.+|.+|
T Consensus 683 t~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~ 753 (859)
T KOG1241|consen 683 TVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREG 753 (859)
T ss_pred HHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHH
Confidence 99999999875 689999999999999999999999999999999886511 12334455666554
No 16
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=99.90 E-value=3.6e-24 Score=224.08 Aligned_cols=160 Identities=49% Similarity=0.827 Sum_probs=131.5
Q ss_pred cccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCcccccccc
Q 000196 764 VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDL 843 (1874)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 843 (1874)
|+.||.+||+|++.|+++|++++++.+|++++|++|+|||+|||++|.+....+... ..+......+......+.
T Consensus 1 Vv~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 1 VVDPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-----SENSNDESTDISLPMMGI 75 (160)
T ss_pred CcchHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc-----cccccccchhhHHhhccC
Confidence 578999999999999999999999999999999999999999999986654111000 000000000111111111
Q ss_pred CCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHH
Q 000196 844 WPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKL 923 (1874)
Q Consensus 844 ~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l 923 (1874)
.++.++||+++++++|+++|+|++++++|.++++|++.||+++|.+|+||+++|+|.+++++++++++++|+++++|
T Consensus 76 ---~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 76 ---SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 000196 924 GTLVSIVR 931 (1874)
Q Consensus 924 ~~lv~~~~ 931 (1874)
+.++.++|
T Consensus 153 ~~lv~ivk 160 (160)
T PF11865_consen 153 ADLVSIVK 160 (160)
T ss_pred HHHHHHhC
Confidence 99998764
No 17
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.86 E-value=3.6e-18 Score=195.88 Aligned_cols=561 Identities=12% Similarity=0.137 Sum_probs=359.2
Q ss_pred HHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHH
Q 000196 486 LQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKL 565 (1874)
Q Consensus 486 l~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~L 565 (1874)
+..+..+.........++...+..-=+.....+..++..+|+......- +....+..+-++-.+
T Consensus 118 ~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~----------------Pe~li~~sN~il~ai 181 (858)
T COG5215 118 LAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEA----------------PEDLIQMSNVILFAI 181 (858)
T ss_pred HHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccC----------------HHHHHHHhhHHHHHH
Confidence 3344444443333444555444332222233455566777776654321 011233334444444
Q ss_pred HHHHh-cCCChhHHHHHHHhccCC-----CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH
Q 000196 566 LIAAV-ADADVTVRHSIFSSLYGN-----RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR 639 (1874)
Q Consensus 566 l~~~~-~d~~~~vR~~~l~~l~~~-----~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~ 639 (1874)
+..+. ++++..||.+++.+|-+. ..|...-...-+++....+-+.++.+++.+|+-++.++...+-..+.|++.
T Consensus 182 v~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE 261 (858)
T COG5215 182 VMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME 261 (858)
T ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 578999999999998520 111110000113455556667788999999999999999887666667777
Q ss_pred HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC--cccc---------c------cchHHHHHHHHHHhhcc--CCCCC
Q 000196 640 RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC--ERLI---------R------PYIAPIHKALVARLLEG--TGINA 700 (1874)
Q Consensus 640 ~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~--~~~~---------~------py~~~il~~ll~~l~~~--~~~~~ 700 (1874)
+.|..+......+ ...+...+|.+..+.+++.- +... + .-+..+++.+++.+... +..+.
T Consensus 262 ~aL~alt~~~mks-~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D 340 (858)
T COG5215 262 NALAALTGRFMKS-QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD 340 (858)
T ss_pred HHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 7777766665566 55677778888887776421 1111 1 12556888888887642 22224
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc-ccccccchHHHHHHH
Q 000196 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLLL 779 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll 779 (1874)
++++.-++..|+...++..|+.+.. .++..+-+.++.. ++..|++|+.++|.+...-..+ .+|+ .|+.++.+.
T Consensus 341 dWn~smaA~sCLqlfaq~~gd~i~~---pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~--V~qalp~i~ 414 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGDKIMR---PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKI--VPQALPGIE 414 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhhHhHH---HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhh--HHhhhHHHH
Confidence 5666677788899999998876432 2555555666654 7899999999999988765443 3554 378888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhcc-----cCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccch
Q 000196 780 KMLNGELVWSTRREVLKVLGIMGA-----LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYY 854 (1874)
Q Consensus 780 ~~l~~~~~~~vr~~al~~lg~lga-----ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 854 (1874)
+... ++.--++..+.+|+|.+.. ++|-. +.
T Consensus 415 n~m~-D~~l~vk~ttAwc~g~iad~va~~i~p~~--------------------------------------------Hl 449 (858)
T COG5215 415 NEMS-DSCLWVKSTTAWCFGAIADHVAMIISPCG--------------------------------------------HL 449 (858)
T ss_pred Hhcc-cceeehhhHHHHHHHHHHHHHHHhcCccc--------------------------------------------cc
Confidence 8776 4456788888999988752 12211 11
Q ss_pred HHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC-------CCCCccchhHHHHHHHhc--CCcchhHHHHHHHHH
Q 000196 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-------CVPYLPKVLPDLFHTVRT--CDDYLKDYITWKLGT 925 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~-------~~~~l~~ilp~ll~~l~~--~~~~~~~~~~~~l~~ 925 (1874)
+..+- +.+..|.|..... ..+.-+.+.++.++.+. ..+|.+.|+..+++.-.. .+.+.|..+|..||+
T Consensus 450 ~~~vs-a~liGl~D~p~~~--~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgt 526 (858)
T COG5215 450 VLEVS-ASLIGLMDCPFRS--INCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGT 526 (858)
T ss_pred cHHHH-HHHhhhhccchHH--hhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 12222 3333344432211 12333444444443221 234555566666554332 234589999999999
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHhhcCC----C----C-CcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhc
Q 000196 926 LVSIVRQHIRKYLQELFSLISELWSSF----S----L-PATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVL 996 (1874)
Q Consensus 926 lv~~~~~~i~~y~~~i~~~i~~~~~~~----~----~-~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l 996 (1874)
++.+..+.+.+.+-.+.+.+.+.+... . + .+..-+.++..++.+++++....+.++.+--+.++.++++++
T Consensus 527 li~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~l 606 (858)
T COG5215 527 LILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRIL 606 (858)
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 999887766655544444443333210 0 0 000112244567889999999999999999999999999999
Q ss_pred ccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHH
Q 000196 997 SDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHL 1073 (1874)
Q Consensus 997 ~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l 1073 (1874)
++.+.+.-..-+.-.++++. ++++.++.|+..++|.+.+.+.. ....+-..|++.+|+|++. .+|.+|...++..|
T Consensus 607 es~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~-~d~~v~~~avglvgdlantl~~df~~y~d~~ms~L 685 (858)
T COG5215 607 ESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC-TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSL 685 (858)
T ss_pred hccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc-hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 75422111111222333333 36778899999999999998843 4667889999999999997 57889999999999
Q ss_pred HHHhCCCC--HHHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCC
Q 000196 1074 KLVLDGKN--DELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHR 1118 (1874)
Q Consensus 1074 ~~~l~~~~--~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~ 1118 (1874)
...|+++. .++|.+++.++++++..+|.+|.+|+..|+-.+.+..
T Consensus 686 vQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas 732 (858)
T COG5215 686 VQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQAS 732 (858)
T ss_pred HHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 99998764 5899999999999999999999999999999888753
No 18
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.75 E-value=1.3e-13 Score=163.12 Aligned_cols=557 Identities=17% Similarity=0.206 Sum_probs=344.1
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhh----cCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH
Q 000196 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWL----RGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA 198 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l----~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~ 198 (1874)
.|+-|+...+.+++-.+.+-| ++.++++| ++.++|..||.++.+..+||.-.+-...||+..++..
T Consensus 488 ~deYVRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~i 557 (1172)
T KOG0213|consen 488 KDEYVRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKI 557 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHH
Confidence 478899999999998888743 22233333 3667899999999999999999888888999999999
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHH
Q 000196 199 IWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSR 278 (1874)
Q Consensus 199 i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~ 278 (1874)
|-.+|.|.+..||-.++.|++.+++... .....-+..++.-+-.|..++.. ..--+-+.|+|.|+--+...-..|
T Consensus 558 i~~gl~De~qkVR~itAlalsalaeaa~----Pygie~fDsVlkpLwkgir~hrg-k~laafLkAigyliplmd~eya~y 632 (1172)
T KOG0213|consen 558 IEHGLKDEQQKVRTITALALSALAEAAT----PYGIEQFDSVLKPLWKGIRQHRG-KELAAFLKAIGYLIPLMDAEYASY 632 (1172)
T ss_pred HHHhhcccchhhhhHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHHHHccC-hHHHHHHHHHhhccccccHHHHHH
Confidence 9999999999999999999998877543 34455677777777777765531 223344446776665433333344
Q ss_pred H-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC---CCc---chHHHHHHHHHh
Q 000196 279 Y-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP---AER---DSGFIALGEMAG 350 (1874)
Q Consensus 279 ~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~---~~R---~~a~~alg~la~ 350 (1874)
| .+++-.+.+-+++++...++.++..+...|.-.+.+ +.|+ .+++|.++...... -+| ..-..+-..+|.
T Consensus 633 yTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~--~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 633 YTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE--PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred hHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC--HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 4 356767777788999999999999999988755432 2343 46667666554321 122 133444555777
Q ss_pred hchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 000196 351 ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIP 429 (1874)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p 429 (1874)
.+|. .+++..+...+.+....-+.-+.+.+..+...+|. +|..-+
T Consensus 711 KvG~------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl---------------------------- 756 (1172)
T KOG0213|consen 711 KVGS------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL---------------------------- 756 (1172)
T ss_pred HhCc------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH----------------------------
Confidence 7876 23333333333222111112245555555555553 332221
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCC--CcchhhHHH
Q 000196 430 SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKG--HDLLEFARD 505 (1874)
Q Consensus 430 ~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~f~~--~~l~~~v~~ 505 (1874)
.+++++-|...+..+. . ++ ..-|..+|.. .|.+ ..+.+.+..
T Consensus 757 ------eE~lidgil~Afqeqt------------------------t-~d---~vml~gfg~V~~~lg~r~kpylpqi~s 802 (1172)
T KOG0213|consen 757 ------EERLIDGILYAFQEQT------------------------T-ED---SVMLLGFGTVVNALGGRVKPYLPQICS 802 (1172)
T ss_pred ------HHHHHHHHHHHHHhcc------------------------c-ch---hhhhhhHHHHHHHHhhccccchHHHHH
Confidence 1122222211111000 0 00 0111112211 1211 122344455
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.++..+.+..+.||..|+..|+.+..-- +.| .+ ......++-| +--.+.+..++|--.++.++
T Consensus 803 tiL~rLnnksa~vRqqaadlis~la~Vl-ktc----------~e--e~~m~~lGvv----LyEylgeeypEvLgsILgAi 865 (1172)
T KOG0213|consen 803 TILWRLNNKSAKVRQQAADLISSLAKVL-KTC----------GE--EKLMGHLGVV----LYEYLGEEYPEVLGSILGAI 865 (1172)
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHH-Hhc----------cH--HHHHHHhhHH----HHHhcCcccHHHHHHHHHHH
Confidence 5677889999999999999988875421 111 00 0011112222 22234667777777776666
Q ss_pred cC-------CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccch-HHHHHHHHHHHHHhhCCCChH
Q 000196 586 YG-------NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLP-ALRRHLIQLLTYLEQSSADNK 657 (1874)
Q Consensus 586 ~~-------~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p-~l~~~l~~~l~~l~~~~~~~~ 657 (1874)
.. ...+-| -.++++.|.-.|...+..|++.+++++|+++...|.++-+ .+.++...++..|+.. ...
T Consensus 866 kaI~nvigm~km~pP---i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah--kK~ 940 (1172)
T KOG0213|consen 866 KAIVNVIGMTKMTPP---IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH--KKE 940 (1172)
T ss_pred HHHHHhccccccCCC---hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH--HHH
Confidence 31 111111 1357888888888999999999999999999999998763 3344555566655543 456
Q ss_pred hHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccC------------------------------CCCCChhHHHH
Q 000196 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGT------------------------------GINANNGIISG 707 (1874)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~------------------------------~~~~~~~v~~~ 707 (1874)
.|..|...+|.|++..++ ..++..|+..++-.. ..-++.+|..+
T Consensus 941 iRRaa~nTfG~IakaIGP------qdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen 941 IRRAAVNTFGYIAKAIGP------QDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred HHHHHHhhhhHHHHhcCH------HHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHh
Confidence 788888899998877652 234444444333110 00135667889
Q ss_pred HHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhc---C
Q 000196 708 VLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN---G 784 (1874)
Q Consensus 708 ~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~---~ 784 (1874)
++.++.-+.+..|+.-..|+-.+.|.+.++|.|. +...|..|...+..++-+... ...-+.+-.|++++= -
T Consensus 1015 VLkalsf~FeyigemskdYiyav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg~~g-----~g~eda~iHLLN~iWpNIl 1088 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR-DLVHRQTAMNVIKHLALGVPG-----TGCEDALIHLLNLIWPNIL 1088 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcCCCC-----cCcHHHHHHHHHHhhhhhc
Confidence 9999999999999999999999999999999986 677899998888877654321 111234444444331 1
Q ss_pred CCCHHHHHHHHHHH
Q 000196 785 ELVWSTRREVLKVL 798 (1874)
Q Consensus 785 ~~~~~vr~~al~~l 798 (1874)
+.++.+-.+...++
T Consensus 1089 e~sPhviqa~~e~~ 1102 (1172)
T KOG0213|consen 1089 ETSPHVIQAFDEAM 1102 (1172)
T ss_pred CCChHHHHHHHHHH
Confidence 33566666655555
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.74 E-value=6e-13 Score=157.47 Aligned_cols=725 Identities=17% Similarity=0.183 Sum_probs=414.3
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~ 190 (1874)
|...|..++.+.-|.+-+..-.++++|+.-.-+...-.||...+-.+-+++- +.+--+|..+-.++..|+..|+-
T Consensus 400 fnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvVieplli-ded~yar~egreIisnLakaaGl---- 474 (1172)
T KOG0213|consen 400 FNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI-DEDYYARVEGREIISNLAKAAGL---- 474 (1172)
T ss_pred HHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeeccee-cchHHHhhchHHHHHHHHHHhhh----
Confidence 3344444554443455566667777777654222222222221111112221 23334566777788888776552
Q ss_pred chHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 191 ~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
...+..+-.-+-..++.||..++.|++.+.+.+. +..++|-+....++..+|..||.++.+...+...
T Consensus 475 --a~mistmrpDidn~deYVRnttarafavvasalg----------ip~llpfLkavc~SkkSwqaRhTgIkivqqIail 542 (1172)
T KOG0213|consen 475 --ATMISTMRPDIDNKDEYVRNTTARAFAVVASALG----------IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAIL 542 (1172)
T ss_pred --HHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC----------cHHHHHHHHHHhccccchhhhchhhHHHHHHHHH
Confidence 2233333334445678999999999988766544 2333443333344555699999999999999887
Q ss_pred chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCc--chHHHHHHHH
Q 000196 271 TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAER--DSGFIALGEM 348 (1874)
Q Consensus 271 ~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R--~~a~~alg~l 348 (1874)
.|--+.||+..++..+-..+.+.+.-||.....++..+|+.+..-=.+ .++.++--|-.-++..+-+ .+-+.|+|-+
T Consensus 543 ~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie-~fDsVlkpLwkgir~hrgk~laafLkAigyl 621 (1172)
T KOG0213|consen 543 SGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIE-QFDSVLKPLWKGIRQHRGKELAAFLKAIGYL 621 (1172)
T ss_pred hcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHccChHHHHHHHHHhhc
Confidence 777888999999998888889999999999999999999765431111 2355554444444322222 2344556655
Q ss_pred Hhhchhhhhh-hhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHH
Q 000196 349 AGALDGELFH-YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITV 426 (1874)
Q Consensus 349 a~~v~~~~~p-~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~-~ll~~ll~~~ls~~l~~~l~~i~~ 426 (1874)
+--...+-.- |-..+|-.+...+...+.+....++..+..+|...|-+ ..|+. +++|..|.+--...+ ++
T Consensus 622 iplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~y~r~dilp~ff~~fw~rrm--A~----- 693 (1172)
T KOG0213|consen 622 IPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PAYIRFDILPEFFFSFWGRRM--AL----- 693 (1172)
T ss_pred cccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HHHHhhhhhHHHHhhhhhhhh--hc-----
Confidence 5444443333 33456666666554333222234677777777766643 12443 566665542100000 00
Q ss_pred hCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHH
Q 000196 427 SIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDS 506 (1874)
Q Consensus 427 ~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~ 506 (1874)
....+.+ .-+ .+..+| .-+|+ .+.+..+
T Consensus 694 ---------------------drr~ykq---------------------lv~-ttv~ia-~KvG~--------~~~v~R~ 721 (1172)
T KOG0213|consen 694 ---------------------DRRNYKQ---------------------LVD-TTVEIA-AKVGS--------DPIVSRV 721 (1172)
T ss_pred ---------------------cccchhh---------------------HHH-HHHHHH-HHhCc--------hHHHHHH
Confidence 0000000 000 011111 11221 1344455
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCCh--hHH----HH
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADV--TVR----HS 580 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~--~vR----~~ 580 (1874)
+.+| .++.+..|+.++.+..+++...... .+ +.....++++.++ . ++.+.+. .|. -+
T Consensus 722 v~~l-kde~e~yrkm~~etv~ri~~~lg~~----di-------derleE~lidgil----~-Afqeqtt~d~vml~gfg~ 784 (1172)
T KOG0213|consen 722 VLDL-KDEPEQYRKMVAETVSRIVGRLGAA----DI-------DERLEERLIDGIL----Y-AFQEQTTEDSVMLLGFGT 784 (1172)
T ss_pred hhhh-ccccHHHHHHHHHHHHHHHhccccc----cc-------cHHHHHHHHHHHH----H-HHHhcccchhhhhhhHHH
Confidence 5554 3457788999988888877543210 00 0001233444443 3 2333222 222 24
Q ss_pred HHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc----cchHHHHHHHHHHHHHhhCCCCh
Q 000196 581 IFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY----VLPALRRHLIQLLTYLEQSSADN 656 (1874)
Q Consensus 581 ~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~----v~p~l~~~l~~~l~~l~~~~~~~ 656 (1874)
+..+|+ .+.-+|+ +.++..+...|+.+++.||+.|.+++++++...... .+.++.-+|.+.+- . ..+
T Consensus 785 V~~~lg--~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg----e-eyp 855 (1172)
T KOG0213|consen 785 VVNALG--GRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG----E-EYP 855 (1172)
T ss_pred HHHHHh--hccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC----c-ccH
Confidence 455554 3445666 457888888999999999999999999988754332 33444433333331 1 234
Q ss_pred HhHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHH--
Q 000196 657 KCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL-- 733 (1874)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~-- 733 (1874)
+.-...+.+|..|....+ ....|=+..+++.|.|.+++. ...|..+.+.-+|.++..+++.+.. .+-|.+
T Consensus 856 EvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-----heKVqen~IdLvg~IadrgpE~v~a--REWMRIcf 928 (1172)
T KOG0213|consen 856 EVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-----HEKVQENCIDLVGTIADRGPEYVSA--REWMRICF 928 (1172)
T ss_pred HHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-----HHHHHHHHHHHHHHHHhcCcccCCH--HHHHHHHH
Confidence 433333444444444433 224555788999999999975 7788888888999999887764322 233333
Q ss_pred -HHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhh
Q 000196 734 -IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRN 812 (1874)
Q Consensus 734 -l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~ 812 (1874)
+++.|.. ...+.|.+|+.+||-|++..|. .++|..|++.|+.. ....|.-+--.|+++|
T Consensus 929 eLlelLka-hkK~iRRaa~nTfG~IakaIGP--------qdVLatLlnnLkvq-eRq~RvcTtvaIaIVa---------- 988 (1172)
T KOG0213|consen 929 ELLELLKA-HKKEIRRAAVNTFGYIAKAIGP--------QDVLATLLNNLKVQ-ERQNRVCTTVAIAIVA---------- 988 (1172)
T ss_pred HHHHHHHH-HHHHHHHHHHhhhhHHHHhcCH--------HHHHHHHHhcchHH-HHHhchhhhhhhhhhh----------
Confidence 3344443 2456889999999999988764 26899999988754 2233322212222221
Q ss_pred cccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC
Q 000196 813 QQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG 892 (1874)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~ 892 (1874)
+-.-+-.|+++||.--+-|.. .++..+..|+.++|+..|..
T Consensus 989 --------------------------------------E~c~pFtVLPalmneYrtPe~-nVQnGVLkalsf~Feyigem 1029 (1172)
T KOG0213|consen 989 --------------------------------------ETCGPFTVLPALMNEYRTPEA-NVQNGVLKALSFMFEYIGEM 1029 (1172)
T ss_pred --------------------------------------hhcCchhhhHHHHhhccCchh-HHHHhHHHHHHHHHHHHHHH
Confidence 000123567788776666654 45678999999999999988
Q ss_pred CCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHH
Q 000196 893 CVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQ 972 (1874)
Q Consensus 893 ~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~ 972 (1874)
...|+-.+.|.+..++.+.+...|..+...+.-++- +..---..+.++.++.-.|.+.-.+. |.....+..+++.
T Consensus 1030 skdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~L--g~~g~g~eda~iHLLN~iWpNIle~s---Phviqa~~e~~eg 1104 (1172)
T KOG0213|consen 1030 SKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLAL--GVPGTGCEDALIHLLNLIWPNILETS---PHVIQAFDEAMEG 1104 (1172)
T ss_pred hhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhc--CCCCcCcHHHHHHHHHHhhhhhcCCC---hHHHHHHHHHHHH
Confidence 889999999999999988887777665543332221 10001224566677777787643221 1122245677888
Q ss_pred HHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHH
Q 000196 973 LCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEV 1017 (1874)
Q Consensus 973 l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~ 1017 (1874)
+..+++.. .++..+++-|-++.+. -|....++...+..
T Consensus 1105 ~r~~Lg~~------~~~~Y~~QGLFHPark-VR~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1105 LRVALGPQ------AMLKYCLQGLFHPARK-VRKRYWTVYNSMYH 1142 (1172)
T ss_pred HHHHhchH------HHHHHHHHhccCcHHH-HHHHHHHHHHhHhh
Confidence 88887754 2344555555454322 24444555554443
No 20
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.70 E-value=5.9e-12 Score=172.58 Aligned_cols=718 Identities=14% Similarity=0.087 Sum_probs=379.5
Q ss_pred CCCcHHHHHHHHHHHcCC--C-CchhhHHHHHHHHHHHHHhhhChHHHHHHHH---HHHHHHHhhhcCCChhhhhhHHHH
Q 000196 19 GGGSLDALNRILADLCTH--G-NPKEGASLALRKHIEEQARDLGGEAFSRFMD---QLYDRISGLLESNDAAENLGALRA 92 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~--~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~---~l~~~i~~l~~s~~~~~r~~~i~a 92 (1874)
..++...+..++++|++. + ++++.|+.+|+.+.+.. .+ .++++- .....+..++++.+...|.-++.+
T Consensus 8 ~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~-----~e-nR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaa 81 (2102)
T PLN03200 8 PDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTR-----EE-ARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAV 81 (2102)
T ss_pred ccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcC-----hH-HHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 355677899999999976 3 34445888888887322 22 234332 245566677888888788777777
Q ss_pred HhHhhccccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCC-C-cchH-HH-HHHHHHHHhhhcCC-C
Q 000196 93 IDELIDVALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGG-A-MTAD-EV-EFQVKMALDWLRGD-R 165 (1874)
Q Consensus 93 i~~li~~~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g-~-~~~~-~v-~~~~~~~~~~l~~~-~ 165 (1874)
+..|-..+ +...++- -..+.|..++. ..+.+.++.|+.+|..|+..+. . .... .+ ..-++.+++.+++. +
T Consensus 82 L~nLS~~e--~nk~~Iv~~GaIppLV~LL~-sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk 158 (2102)
T PLN03200 82 LGVLCKEE--DLRVKVLLGGCIPPLLSLLK-SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNK 158 (2102)
T ss_pred HHHHhcCH--HHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCch
Confidence 77774332 2222221 23456666775 4589999999999999987531 1 1101 11 22345555555532 1
Q ss_pred cc-hhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHH
Q 000196 166 VE-YRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFE 242 (1874)
Q Consensus 166 ~~-~~r~aA~~~l~~la~~~p~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~i~~ 242 (1874)
.+ ..+..|+.+|..|+.+....-..-+ ...+|.+...|.++++.++..|+.++...+.. .+. .+.... ...+|
T Consensus 159 ~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass---~ee-~~~aVIeaGaVP 234 (2102)
T PLN03200 159 QDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMA---FES-SISKVLDAGAVK 234 (2102)
T ss_pred hhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---ChH-HHHHHHHCCCHH
Confidence 12 2344567788888876543211111 24778888899999999999998887654321 111 111111 23455
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcc---------hhHHHHHHHHHhHhHhhhC
Q 000196 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHR---------DRLVRLSITSLLPRIAHFL 312 (1874)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~---------~~~vr~~~~~~i~~la~~~ 312 (1874)
.+..-+.+.++..++..|+.+|+.|...+.++-..-.+ ..++.++..+..+ +...++.++++++.+|.-.
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~ 314 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM 314 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc
Confidence 55555644334567888888888887643321110000 1122333333322 2334556666666665321
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 313 RDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 313 ~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
..++++|...+...++......++|.++..+.. ++.-.+.++ .+. ...+..++..+++.
T Consensus 315 ---------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l-----~d~~~~~~~-~i~------~~~v~~~LV~Llr~ 373 (2102)
T PLN03200 315 ---------SALILYLGELSESPRSPAPIADTLGALAYALMV-----FDSSAESTR-AFD------PTVIEQILVKLLKP 373 (2102)
T ss_pred ---------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh-----cCCchhhhh-hcc------ccccHHHHHHHhCC
Confidence 234444444444333322222222332211100 000000000 000 00111122222221
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000196 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1874)
Q Consensus 393 ~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1874)
++-.+....+.+.|-..--++.+...+.+
T Consensus 374 --k~p~~vqe~V~eALasl~gN~~l~~~L~~------------------------------------------------- 402 (2102)
T PLN03200 374 --RDTKLVQERIIEALASLYGNAYLSRKLNH------------------------------------------------- 402 (2102)
T ss_pred --CCCchhHHHHHHHHHHhcCChHHHHHHHh-------------------------------------------------
Confidence 11000001111111000000000000000
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCccccccccccccccc
Q 000196 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1874)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1874)
.=....++.++...+.+++..++.++..+.......
T Consensus 403 ----------------------------~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~---------------- 438 (2102)
T PLN03200 403 ----------------------------AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGL---------------- 438 (2102)
T ss_pred ----------------------------ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHH----------------
Confidence 000112334555556677766666665554221100
Q ss_pred chhHH-HHHHHHHHHHHHhcCCChhHHHHHHHhcc---CCCCc-chhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhh
Q 000196 553 KRRRL-IEELVEKLLIAAVADADVTVRHSIFSSLY---GNRGF-DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLS 627 (1874)
Q Consensus 553 ~~~~~-~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~---~~~~f-~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~ 627 (1874)
...+ -...++.|+.. +..++..++..++..++ ..... -..+.....++.|..+|..++..+|+.|+++|+.++
T Consensus 439 -~~aIi~~ggIp~LV~L-L~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 439 -WEALGGREGVQLLISL-LGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC 516 (2102)
T ss_pred -HHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 0000 01123333332 34456677766655552 11100 011223456889999999999999999999999999
Q ss_pred cCCcCccchHHH--HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHH
Q 000196 628 EKNPAYVLPALR--RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGII 705 (1874)
Q Consensus 628 ~~~p~~v~p~l~--~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~ 705 (1874)
...+ .+...+. ..+..++..+ .+ ++.+.++.|+++|..++...... .++.++..+... ++.+.
T Consensus 517 ~~~~-qir~iV~~aGAIppLV~LL-~s-gd~~~q~~Aa~AL~nLi~~~d~~-------~I~~Lv~LLlsd-----d~~~~ 581 (2102)
T PLN03200 517 CHSE-DIRACVESAGAVPALLWLL-KN-GGPKGQEIAAKTLTKLVRTADAA-------TISQLTALLLGD-----LPESK 581 (2102)
T ss_pred CCcH-HHHHHHHHCCCHHHHHHHH-hC-CCHHHHHHHHHHHHHHHhccchh-------HHHHHHHHhcCC-----ChhHH
Confidence 8532 1111111 1222233333 34 57888999999999998764322 234445545443 56777
Q ss_pred HHHHHHHHHHHHhccc-chhhc---HHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 000196 706 SGVLVTVGDLARVGGF-GMRQY---ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1874)
Q Consensus 706 ~~~~~~l~~La~~~g~-~~~~~---~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1874)
..++.++|.+...... ++..- ....+|.+.+.+..+ +...++.|+++|+.++.+......... .-..++-|+..
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv-~agaIpPLV~L 659 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLA-TDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHH-HcCCHHHHHHH
Confidence 7788888887664432 11111 135788999988866 567888999999999876543211111 12356666677
Q ss_pred hcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccc-hHHHHHH
Q 000196 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDY-YSTVAIN 860 (1874)
Q Consensus 782 l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~vi~ 860 (1874)
|++. +.++++++.++|+.+..- .... ...+ ...-+++
T Consensus 660 Lss~-~~~v~keAA~AL~nL~~~--~~~~---------------------------------------q~~~~v~~GaV~ 697 (2102)
T PLN03200 660 LTNN-TEAVATQSARALAALSRS--IKEN---------------------------------------RKVSYAAEDAIK 697 (2102)
T ss_pred HhcC-ChHHHHHHHHHHHHHHhC--CCHH---------------------------------------HHHHHHHcCCHH
Confidence 7654 567899999998876420 0000 0000 1123466
Q ss_pred HHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCC-ccchhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 000196 861 SLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928 (1874)
Q Consensus 861 ~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~-l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~ 928 (1874)
.|++.|++++. .....+..++.++++.-... ... -..++|.+...++..++..|+.+...|..+..
T Consensus 698 pL~~LL~~~d~-~v~e~Al~ALanLl~~~e~~-~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 698 PLIKLAKSSSI-EVAEQAVCALANLLSDPEVA-AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHHHhCCCh-HHHHHHHHHHHHHHcCchHH-HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 78888887754 45567888888888754222 111 14668999999999999999999888877765
No 21
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.66 E-value=1.7e-12 Score=150.90 Aligned_cols=563 Identities=15% Similarity=0.182 Sum_probs=341.3
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH
Q 000196 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV 201 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~ 201 (1874)
+.|+-|+...+.++|-.+.+-| ..++.+ .++.+. .+.++|..||.++.+..+|++-.+....+|+..++..|-.
T Consensus 292 ~~deYVRnvt~ra~~vva~alg--v~~llp-fl~a~c---~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~ 365 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALG--VEELLP-FLEALC---GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISK 365 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhC--cHHHHH-HHHHHh---cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHH
Confidence 3578899999999998888743 111111 112111 3567899999999999999999888888999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc-chhhhHHHHH
Q 000196 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN-TGEFMMSRYR 280 (1874)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~-~~~~~~~~~~ 280 (1874)
++.|.+..||-.++.+++.+++... ......+..++.-+-.|..++.. ..--+-+.|.|.++-. .+++.--+-.
T Consensus 366 ~l~D~~~~vRi~tA~alS~lae~~~----Pygie~fd~vl~pLw~g~~~hrg-k~l~sfLkA~g~iiplm~peYa~h~tr 440 (975)
T COG5181 366 LLKDRSRFVRIDTANALSYLAELVG----PYGIEQFDEVLCPLWEGASQHRG-KELVSFLKAMGFIIPLMSPEYACHDTR 440 (975)
T ss_pred HhhccceeeeehhHhHHHHHHHhcC----CcchHHHHHHHHHHHHHHHhcCC-chHHHHHHHhccccccCChHhhhhhHH
Confidence 9999999999999999998877644 24445566677666666654421 1233334456655542 3345545566
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---CCCcc---hHHHHHHHHHhhchh
Q 000196 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---PAERD---SGFIALGEMAGALDG 354 (1874)
Q Consensus 281 ~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---~~~R~---~a~~alg~la~~v~~ 354 (1874)
+.++.+++.+++++...++.+.......++....+ -..|.+++.|.+++..-. ..+|. ....+-.-+|.-+|.
T Consensus 441 e~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~t-p~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~ 519 (975)
T COG5181 441 EHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDT-PWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGD 519 (975)
T ss_pred HHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCC-HHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCC
Confidence 78899999999988888877765555444443322 234568888888876532 12321 111222224444554
Q ss_pred hhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCC-CchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChH
Q 000196 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLP 433 (1874)
Q Consensus 355 ~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~ 433 (1874)
+.+...+.+.+.+....-+.-+....+++...+|. .|..-
T Consensus 520 ------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dEr--------------------------------- 560 (975)
T COG5181 520 ------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDER--------------------------------- 560 (975)
T ss_pred ------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHH---------------------------------
Confidence 44555556655443211112233444444444443 23221
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHH-hhcccccCCCcchhhHHHHHhhhcc
Q 000196 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ-TLARFNFKGHDLLEFARDSVVLYLD 512 (1874)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~-~L~~~~f~~~~l~~~v~~~~~~~l~ 512 (1874)
..+++++.+...+..+... + ..+--++. ++.+.+|.+..+.+.+-..++..+.
T Consensus 561 -leerl~d~il~Afqeq~~t------------------------~-~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~ 614 (975)
T COG5181 561 -LEERLYDSILNAFQEQDTT------------------------V-GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLR 614 (975)
T ss_pred -HHHHHHHHHHHHHHhcccc------------------------c-cEEEecccceeeehhhccCcchHHHHHHHHHHhc
Confidence 1222222222211111000 0 00000000 0112234444333434445678899
Q ss_pred CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC---CC
Q 000196 513 DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG---NR 589 (1874)
Q Consensus 513 ~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~~ 589 (1874)
++.++||..|+..|+.+..- .+.| . -...++.+= .++--.+.+..++|--.++.++.. ..
T Consensus 615 ~k~p~vR~~aadl~~sl~~v-lk~c----------~-----e~~~l~klg-~iLyE~lge~ypEvLgsil~Ai~~I~sv~ 677 (975)
T COG5181 615 SKPPDVRIRAADLMGSLAKV-LKAC----------G-----ETKELAKLG-NILYENLGEDYPEVLGSILKAICSIYSVH 677 (975)
T ss_pred CCCccHHHHHHHHHHHHHHH-HHhc----------c-----hHHHHHHHh-HHHHHhcCcccHHHHHHHHHHHHHHhhhh
Confidence 99999999999998887542 2222 0 011122211 122224567778888777777631 12
Q ss_pred Ccchhh-ccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccch-HHHHHHHHHHHHHhhCCCChHhHHHHHHHHH
Q 000196 590 GFDDFL-AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLP-ALRRHLIQLLTYLEQSSADNKCREESAKLLG 667 (1874)
Q Consensus 590 ~f~~~L-~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p-~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1874)
.|+..- .-..+++.|.-.|...+..|....++++|.++...|.++-+ .+.++...++..|... ..+.|..|...+|
T Consensus 678 ~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~--nKeiRR~A~~tfG 755 (975)
T COG5181 678 RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW--NKEIRRNATETFG 755 (975)
T ss_pred cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh--hHHHHHhhhhhhh
Confidence 333210 01246788888888899999999999999999999998764 3334455566666554 5678889999999
Q ss_pred HHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhH
Q 000196 668 CLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKR 747 (1874)
Q Consensus 668 ~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r 747 (1874)
.+.+..++ ..++..|+..++-. ....+.+...+|+..|+.+|.. .++|.++.--..+ +..+.
T Consensus 756 ~Is~aiGP------qdvL~~LlnnLkvq-----eRq~RvctsvaI~iVae~cgpf------sVlP~lm~dY~TP-e~nVQ 817 (975)
T COG5181 756 CISRAIGP------QDVLDILLNNLKVQ-----ERQQRVCTSVAISIVAEYCGPF------SVLPTLMSDYETP-EANVQ 817 (975)
T ss_pred hHHhhcCH------HHHHHHHHhcchHH-----HHHhhhhhhhhhhhhHhhcCch------hhHHHHHhcccCc-hhHHH
Confidence 99998763 56788888877643 2333444455777788887753 4677776654433 45677
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 748 ~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
.-.+++++.+.+++|..-.-|.. .+.+.|-..|.+. ++.-|..+..++.-+
T Consensus 818 nGvLkam~fmFeyig~~s~dYvy--~itPlleDAltDr-D~vhRqta~nvI~Hl 868 (975)
T COG5181 818 NGVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDR-DPVHRQTAMNVIRHL 868 (975)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhccc-chHHHHHHHHHHHHH
Confidence 78899999999999876444432 4666666666543 566676666665443
No 22
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=3.7e-12 Score=163.25 Aligned_cols=589 Identities=16% Similarity=0.147 Sum_probs=345.5
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc--chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCcc
Q 000196 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGE--NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMT 146 (1874)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~--~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~-g~~~ 146 (1874)
+.+.+..++.+++++.|+|+-.=+-+++...+.. ...+.+....-...++. .+|.=+-+.|++.+|-.=+.| +...
T Consensus 819 ~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Ls-d~dEf~QDvAsrGlglVYelgd~~~k 897 (1702)
T KOG0915|consen 819 ILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLS-DNDEFSQDVASRGLGLVYELGDSSLK 897 (1702)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhc-ccHHHHHHHHhcCceEEEecCCchhH
Confidence 4455667888999999999988887777665211 12222333333334442 456666666666655332222 2233
Q ss_pred hHHHHHHHHHHHhhh-----------------------------------------------------cCCCcchhHHHH
Q 000196 147 ADEVEFQVKMALDWL-----------------------------------------------------RGDRVEYRRFAA 173 (1874)
Q Consensus 147 ~~~v~~~~~~~~~~l-----------------------------------------------------~~~~~~~~r~aA 173 (1874)
.++|+.+++.+.+.= .....|+-|.+|
T Consensus 898 ~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~Ga 977 (1702)
T KOG0915|consen 898 KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGA 977 (1702)
T ss_pred HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccch
Confidence 333333333332210 123357889999
Q ss_pred HHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCC
Q 000196 174 VLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP 253 (1874)
Q Consensus 174 ~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~ 253 (1874)
...++.|+..+...+.||+.+++|.+..-=-||++.||.+-..--+.+.. ........++..|++++..++.+. .
T Consensus 978 AfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~----D~k~~vd~y~neIl~eLL~~lt~k-e 1052 (1702)
T KOG0915|consen 978 AFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALIT----DSKKVVDEYLNEILDELLVNLTSK-E 1052 (1702)
T ss_pred hhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHHHhccch-h
Confidence 99999999999999999999999999998889999999876654443322 112244578899999999999987 4
Q ss_pred hhHHHHHHHHHHHHHHcc-hhhhHHHHHHHHHHHHHHhhcchhHHHHHH---HHHhHhHhhh----ChhhHHHHHHHHHH
Q 000196 254 VHSIHGSLLAVGELLRNT-GEFMMSRYREVAEIVLRYLEHRDRLVRLSI---TSLLPRIAHF----LRDRFVTNYLKICM 325 (1874)
Q Consensus 254 ~~~~~~al~~l~~ll~~~-~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~---~~~i~~la~~----~~~~f~~~yl~~~~ 325 (1874)
|++|+++++||..|+++. -+.+..++.+++.++++..++=.+.||+++ +.+++.++.- ....=.+..++.++
T Consensus 1053 wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1053 WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence 999999999999999954 367888999999999999999999999986 4455544321 11111234677788
Q ss_pred HHHHHh--hcC-CCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHH
Q 000196 326 NHILTV--LRI-PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR 402 (1874)
Q Consensus 326 ~~Ll~~--L~~-~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~ 402 (1874)
|+|+.. +.+ +..|..++.++-.++...|+.+.||++.+++.+.+....-.+ ..+.-+ +-.. ...-.
T Consensus 1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~----~vLnYl---s~r~----~~~e~ 1201 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEP----QVLNYL---SLRL----INIET 1201 (1702)
T ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccch----HHHHHH---HHhh----hhhHH
Confidence 887753 322 235889999999999999999999999999999887744321 111111 1111 01111
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCch
Q 000196 403 GLLDIMFSAG-LSTTLVDALEQITVSIP-SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSA 480 (1874)
Q Consensus 403 ~ll~~ll~~~-ls~~l~~~l~~i~~~~p-~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1874)
+.++.+...+ -+.++.+.+.....++- ..+..+-.++.+.+. |. . +-+ ...|. ..=
T Consensus 1202 ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R----~s-V---gl~--Tkvg~------------A~f 1259 (1702)
T KOG0915|consen 1202 EALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVR----GS-V---GLG--TKVGC------------ASF 1259 (1702)
T ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHh----cc-C---CCC--cchhH------------HHH
Confidence 2333333221 22222222222211110 011122223333322 10 0 000 00000 000
Q ss_pred hHHHHHHhhccc-ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHH
Q 000196 481 PVQLALQTLARF-NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559 (1874)
Q Consensus 481 ~~~~Al~~L~~~-~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1874)
...++.+...++ +|.|. +...+.+.+.+-++.||++-+.+|+.++.-.-. .....++.
T Consensus 1260 I~~L~~r~~~emtP~sgK-----ll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~----------------dq~qKLie 1318 (1702)
T KOG0915|consen 1260 ISLLVQRLGSEMTPYSGK-----LLRALFPGAKDRNESVRKAFASAMGYLAKFSSP----------------DQMQKLIE 1318 (1702)
T ss_pred HHHHHHHhccccCcchhH-----HHHHHhhccccccHHHHHHHHHHHHHHHhcCCh----------------HHHHHHHH
Confidence 122333433333 22221 223446778889999999999999999853210 01233444
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 560 ELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
.++..++. -.++...++.+.+..+.. .+.+..| ...++|.+|..++++..+....=-++|..++...-..+.=+
T Consensus 1319 ~~l~~~l~--k~es~~siscatis~Ian~s~e~Lkn~--asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~ 1394 (1702)
T KOG0915|consen 1319 TLLADLLG--KDESLKSISCATISNIANYSQEMLKNY--ASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLY 1394 (1702)
T ss_pred HHHHHHhc--cCCCccchhHHHHHHHHHhhHHHHHhh--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhh
Confidence 44433331 112222555555443431 0112221 24589999999998765555555566766665543333225
Q ss_pred HHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc-cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR-PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~-py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
+...+........++ .....|.+++..+-.++......+. |++-.+...+...+..+. .+=.+..+.++....
T Consensus 1395 ~~eiLn~iceni~nn-~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRi-----wdGKe~iLKAl~~~~ 1468 (1702)
T KOG0915|consen 1395 LLEILNLICENITNN-ESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRI-----WDGKEEILKALASAF 1468 (1702)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccc-----cccHHHHHHHHHHHH
Confidence 555555555545555 4578888999998888877665554 777777777777776552 222344555666555
Q ss_pred HhcccchhhcHH
Q 000196 717 RVGGFGMRQYIS 728 (1874)
Q Consensus 717 ~~~g~~~~~~~~ 728 (1874)
..++..+....+
T Consensus 1469 ~a~~~~v~~~~~ 1480 (1702)
T KOG0915|consen 1469 EAGLADVKRNMS 1480 (1702)
T ss_pred HHhHHHHHHhch
Confidence 555554444444
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.65 E-value=8.6e-12 Score=171.01 Aligned_cols=784 Identities=16% Similarity=0.138 Sum_probs=422.0
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcchHHH---HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC--ccchhchHHHHHH
Q 000196 124 DREILVLASKVLGHLARAGGAMTADEV---EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS--TVFNVHVAEFVDA 198 (1874)
Q Consensus 124 d~~v~~~aa~~lg~l~~~~g~~~~~~v---~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p--~~~~~~l~~il~~ 198 (1874)
..+..+.|...+-.+++.+... -.++ ...++.++..|.++ +...|.-|+.++..++.... ..+. ....+|.
T Consensus 28 s~~~~~~Al~~Lr~Lak~~~en-R~~Ia~~aGaIP~LV~lL~sg-~~~vk~nAaaaL~nLS~~e~nk~~Iv--~~GaIpp 103 (2102)
T PLN03200 28 SPQEKELTTARLLELAKTREEA-RKAIGSHSQAMPLLVSLLRSG-TLGAKVNAAAVLGVLCKEEDLRVKVL--LGGCIPP 103 (2102)
T ss_pred CHHHHHHHHHHHHHHHhcChHH-HHHHHHccCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCHHHHHHHH--HcCChHH
Confidence 3566666677776776653211 1111 11355555566543 34566666677778876521 1111 2567777
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHHHhhccCCCChh--HHHHHHHHHHHHHHcchhh
Q 000196 199 IWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNAPVH--SIHGSLLAVGELLRNTGEF 274 (1874)
Q Consensus 199 i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~i~~~~~~~l~~~~~~~--~~~~al~~l~~ll~~~~~~ 274 (1874)
++..|++-++..|++|+.||..+...-. .+ ..+... -....|.+..-+.+.+..+ .+..++.+|..|....+.+
T Consensus 104 LV~LL~sGs~eaKe~AA~AL~sLS~~~~-~D-~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~ 181 (2102)
T PLN03200 104 LLSLLKSGSAEAQKAAAEAIYAVSSGGL-SD-HVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGF 181 (2102)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHcCcc-hh-hhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccch
Confidence 8888888899999999999987654211 01 011111 1233444444444432112 2344456777776644332
Q ss_pred hHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC---CcchHHHHHHHHH
Q 000196 275 MMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA---ERDSGFIALGEMA 349 (1874)
Q Consensus 275 ~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~---~R~~a~~alg~la 349 (1874)
-..-.+ ..++.++.++++.++.++..++.++..++...++. .+.-. ...+|.|...|++.. .|..|..+|++|+
T Consensus 182 ~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~-~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLA 260 (2102)
T PLN03200 182 WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESS-ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALS 260 (2102)
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHH-HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHh
Confidence 222111 25667788888999999999999998888664431 11112 356888888887532 4788999999998
Q ss_pred hhchhhhhhhh--HHHHHHHHHhhcCCCCC---------CCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHH
Q 000196 350 GALDGELFHYL--PTITSHLREAIAPRRGK---------PSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLV 418 (1874)
Q Consensus 350 ~~v~~~~~p~l--~~i~~~l~~~L~~~~~~---------~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~ 418 (1874)
....+ ....+ ...++.+.+.+...... .+..+.-+++.|+... +.+.|++..++.. +.....+.
T Consensus 261 s~s~e-~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~-~~ll~~L~~ll~s---~rd~~~~a 335 (2102)
T PLN03200 261 SQSKE-AKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM-SALILYLGELSES---PRSPAPIA 335 (2102)
T ss_pred cCCHH-HHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc-hhhHHHHHHhhcc---cchHHHHH
Confidence 64322 11111 11233344334221111 1235666666666432 1233333222210 00000000
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCc
Q 000196 419 DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHD 498 (1874)
Q Consensus 419 ~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~ 498 (1874)
++...++ .++.. +.+. +. ...+ +...
T Consensus 336 da~gALa------------yll~l----~d~~---------------------------~~--~~~~--------i~~~- 361 (2102)
T PLN03200 336 DTLGALA------------YALMV----FDSS---------------------------AE--STRA--------FDPT- 361 (2102)
T ss_pred HHHhhHH------------HHHHh----cCCc---------------------------hh--hhhh--------cccc-
Confidence 1000000 00000 0000 00 0000 0000
Q ss_pred chhhHHHHHhhhccCCChHH-HHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhH
Q 000196 499 LLEFARDSVVLYLDDEDKAT-RKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTV 577 (1874)
Q Consensus 499 l~~~v~~~~~~~l~~~~~~V-R~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~v 577 (1874)
-+...+..++.+.++.. ...++.++..++.+ +..
T Consensus 362 ---~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN------------------------------------------~~l 396 (2102)
T PLN03200 362 ---VIEQILVKLLKPRDTKLVQERIIEALASLYGN------------------------------------------AYL 396 (2102)
T ss_pred ---ccHHHHHHHhCCCCCchhHHHHHHHHHHhcCC------------------------------------------hHH
Confidence 01112223333332221 21222222222110 000
Q ss_pred HHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChH
Q 000196 578 RHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1874)
Q Consensus 578 R~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1874)
-..+...+.++.|+..+.-.+.++|..++..|..++..++....-....-..+.|-.+..+ ++..
T Consensus 397 --------------~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-~s~~ 461 (2102)
T PLN03200 397 --------------SRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL-SSEQ 461 (2102)
T ss_pred --------------HHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-CCHH
Confidence 0111122446667777777778899999999988887765432111111112222222233 4677
Q ss_pred hHHHHHHHHHHHHHhCccccccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH--hHHHHH
Q 000196 658 CREESAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLI 734 (1874)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~llp~l 734 (1874)
.++.|++.|+.++....+.....++ ..++.|+..++.+ +..++..++.+|+.++.. .++....+. ..+|.+
T Consensus 462 iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-----~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppL 535 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-----SQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPAL 535 (2102)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHH
Confidence 8889999999998654332221111 3566777777654 678889999999998863 344555552 578899
Q ss_pred HHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcc
Q 000196 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQ 814 (1874)
Q Consensus 735 ~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~ 814 (1874)
++.|.+. +...++.|+++|..++..... ..++.+..+|.++ ++.++..+++++|.+..+-.......+
T Consensus 536 V~LL~sg-d~~~q~~Aa~AL~nLi~~~d~---------~~I~~Lv~LLlsd-d~~~~~~aL~vLgnIlsl~~~~d~~~~- 603 (2102)
T PLN03200 536 LWLLKNG-GPKGQEIAAKTLTKLVRTADA---------ATISQLTALLLGD-LPESKVHVLDVLGHVLSVASLEDLVRE- 603 (2102)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHhccch---------hHHHHHHHHhcCC-ChhHHHHHHHHHHHHHhhcchhHHHHH-
Confidence 9999876 578889999999998765322 2345566667554 567888889988876432211100000
Q ss_pred cCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC-
Q 000196 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC- 893 (1874)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~- 893 (1874)
. .. ..-.++.|..+|+.++. ..+..++.++.+++..-...+
T Consensus 604 --------------------g--------------~~---~~ggL~~Lv~LL~sgs~-~ikk~Aa~iLsnL~a~~~d~~~ 645 (2102)
T PLN03200 604 --------------------G--------------SA---ANDALRTLIQLLSSSKE-ETQEKAASVLADIFSSRQDLCE 645 (2102)
T ss_pred --------------------h--------------hh---ccccHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCChHHHH
Confidence 0 00 01246778888887754 455677788888876322211
Q ss_pred CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh-HHHhHH-HHHHHHHHhhcCCCCCcccccccchhHHHHHH
Q 000196 894 VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQH-IRKYLQ-ELFSLISELWSSFSLPATNRTYRGLPVLHLVQ 971 (1874)
Q Consensus 894 ~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~-i~~y~~-~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~ 971 (1874)
.--....+|.++..++..+...+..+.++|+.+.....+. ...++. ..++.+.+.+...+. .....++.+++
T Consensus 646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~------~v~e~Al~ALa 719 (2102)
T PLN03200 646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSI------EVAEQAVCALA 719 (2102)
T ss_pred HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCCh------HHHHHHHHHHH
Confidence 1233578999999999988888888889988888643322 222232 244445555554331 11225566666
Q ss_pred HHHHHhh--hhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhc---chhhhhhh--hHHHHHHhhcCC-CcH
Q 000196 972 QLCLALN--DEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGG---TLDEHMHL--LLPALIRLFKVD-APV 1043 (1874)
Q Consensus 972 ~l~~~l~--~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~---~~~~~~~~--ilp~l~~~~~~~-~~~ 1043 (1874)
.++..-+ .++.. ...+|.+.+++++.. ...+..+..++..+..-++ .+.++++. .+.+++.++... ...
T Consensus 720 nLl~~~e~~~ei~~--~~~I~~Lv~lLr~G~-~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~ 796 (2102)
T PLN03200 720 NLLSDPEVAAEALA--EDIILPLTRVLREGT-LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDS 796 (2102)
T ss_pred HHHcCchHHHHHHh--cCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcch
Confidence 6654332 23333 355789999997643 2234444444444432221 23344443 578888888653 222
Q ss_pred HHHHHHHHHHHhhccc---cccc--ch-----hHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000196 1044 DIRRAAIETLTRLIPR---VQVT--GH-----ISSLVHHLKLVLDGKNDELRKDAVDALCCLAHA 1098 (1874)
Q Consensus 1044 ~vr~~ai~~l~~l~~~---~~~~--~~-----~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~ 1098 (1874)
..-..|++.++.+++. .++. ++ .+.=+.+|++.+..+++++.+.|+++|..++.-
T Consensus 797 ~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 797 SATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 2334588888888874 2221 12 123366788888888899999999999998854
No 24
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.64 E-value=1.3e-12 Score=151.73 Aligned_cols=682 Identities=17% Similarity=0.155 Sum_probs=389.0
Q ss_pred hHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhc
Q 000196 125 REILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR 204 (1874)
Q Consensus 125 ~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~ 204 (1874)
.+-+....++++++.-.-+...-.||...+-.+-+++- +.+-.+|-.+-.++..|+..|+--+ ++..+-.-+.
T Consensus 219 Dqerhl~vk~idr~Ly~lddl~~pyvhkILvVv~plli-ded~~~r~~g~eii~nL~~~~Gl~~------~vs~mrpDi~ 291 (975)
T COG5181 219 DQERHLVVKLIDRLLYGLDDLKVPYVHKILVVVGPLLI-DEDLKRRCMGREIILNLVYRCGLGF------SVSSMRPDIT 291 (975)
T ss_pred hhhhHhHHHHHHHHHHhcccccccceeeEEEEeecccc-CccHHHhcccHHHHHHHHHHhccce------eeeeccCCcc
Confidence 34455566677776654333333333332222222221 2222345555566666766655321 1111223344
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHH
Q 000196 205 DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAE 284 (1874)
Q Consensus 205 D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~ 284 (1874)
..++.||..+..|.+.+.+.+. ..-+..+++.++ .+..+|+.||.++.+...+....|.-..+|+..++.
T Consensus 292 ~~deYVRnvt~ra~~vva~alg-------v~~llpfl~a~c---~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ 361 (975)
T COG5181 292 SKDEYVRNVTGRAVGVVADALG-------VEELLPFLEALC---GSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLK 361 (975)
T ss_pred cccHHHHHHHHHHHHHHHHhhC-------cHHHHHHHHHHh---cCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHH
Confidence 6678999999999988766544 122334444444 344469999999999999888777778889999999
Q ss_pred HHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcch----HHHHHHHHHhhchhhh-hhh
Q 000196 285 IVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS----GFIALGEMAGALDGEL-FHY 359 (1874)
Q Consensus 285 ~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~----a~~alg~la~~v~~~~-~p~ 359 (1874)
.+-..+.+++..||-.+.+++..+|+....-=.+ .++.++-.|-.-.+. .|+. -+.|+|.+.--...+- .-|
T Consensus 362 ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie-~fd~vl~pLw~g~~~--hrgk~l~sfLkA~g~iiplm~peYa~h~ 438 (975)
T COG5181 362 CISKLLKDRSRFVRIDTANALSYLAELVGPYGIE-QFDEVLCPLWEGASQ--HRGKELVSFLKAMGFIIPLMSPEYACHD 438 (975)
T ss_pred HHHHHhhccceeeeehhHhHHHHHHHhcCCcchH-HHHHHHHHHHHHHHh--cCCchHHHHHHHhccccccCChHhhhhh
Confidence 8888889999999999999999999765431111 234444333333322 2333 2333333332222221 223
Q ss_pred hHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHH-HHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHH
Q 000196 360 LPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHV-RGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDR 438 (1874)
Q Consensus 360 l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l-~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ 438 (1874)
-...|+.+...+...+.+. ...+..+-.+|.++|.+-..++ .++.|.+|++- ...+
T Consensus 439 tre~m~iv~ref~spdeem-kk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~f----------------------w~rr 495 (975)
T COG5181 439 TREHMEIVFREFKSPDEEM-KKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPF----------------------WRRR 495 (975)
T ss_pred HHHHHHHHHHHhCCchhhc-chhHHHHHHHHhccCCCCHHHHHHhhcHHhhchH----------------------HHhh
Confidence 4567888888775443221 2455566677888887544444 45666655420 0000
Q ss_pred HHHHHHHHhcCCC--CCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCCh
Q 000196 439 LLDCISFVLSKSH--YSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDK 516 (1874)
Q Consensus 439 ll~~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~ 516 (1874)
. .|+. +.+ . ...+..+| +++|+ +++-+-++.++.|+.+
T Consensus 496 ~--------A~dr~~~k~---------------------v-~~ttvilA-k~~g~---------~~v~~kil~~~~De~e 535 (975)
T COG5181 496 S--------AGDRRSYKQ---------------------V-VLTTVILA-KMGGD---------PRVSRKILEYYSDEPE 535 (975)
T ss_pred h--------cccccccce---------------------e-ehhHHHHH-HHcCC---------hHHHHHHHhhccCCcc
Confidence 0 0100 000 0 00011112 22221 5566667788888888
Q ss_pred HHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHH------HHHHhccCCCC
Q 000196 517 ATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRH------SIFSSLYGNRG 590 (1874)
Q Consensus 517 ~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~------~~l~~l~~~~~ 590 (1874)
..|+.+|.+..+.+...... .+. .....++++.+ +. ++.+.+..+.. +++.++. -+
T Consensus 536 p~r~m~a~~vsri~~~lg~~----~~d-------Erleerl~d~i----l~-Afqeq~~t~~~il~~f~tv~vsl~--~r 597 (975)
T COG5181 536 PYRKMNAGLVSRIFSRLGRL----GFD-------ERLEERLYDSI----LN-AFQEQDTTVGLILPCFSTVLVSLE--FR 597 (975)
T ss_pred hhhhhhhHHHHHHHHhcccc----ccc-------HHHHHHHHHHH----HH-HHHhccccccEEEecccceeeehh--hc
Confidence 99999888877776533210 010 00122333333 32 34443333211 1222221 12
Q ss_pred cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc----cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHH
Q 000196 591 FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY----VLPALRRHLIQLLTYLEQSSADNKCREESAKLL 666 (1874)
Q Consensus 591 f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~----v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L 666 (1874)
..+|+ +.++..++..|+.+.+.||+.|.++.|.|+....+. .+.++..+|.+.+ .. ..++.-...+.++
T Consensus 598 ~kp~l--~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~l----ge-~ypEvLgsil~Ai 670 (975)
T COG5181 598 GKPHL--SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENL----GE-DYPEVLGSILKAI 670 (975)
T ss_pred cCcch--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhc----Cc-ccHHHHHHHHHHH
Confidence 23455 357888889999999999999999998877643321 1222332222222 11 2344333334444
Q ss_pred HHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchh--hcHHhHHHHHHHHHhcCcc
Q 000196 667 GCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMR--QYISELMPLIVEALLDGAA 743 (1874)
Q Consensus 667 ~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~--~~~~~llp~l~~~l~d~~~ 743 (1874)
..+..... +.++|=+..|++.+.|.+++. ...|..+-+.-+|.++..+++.+. .++.-.+ -+++.|... +
T Consensus 671 ~~I~sv~~~~~mqpPi~~ilP~ltPILrnk-----h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcf-eLvd~Lks~-n 743 (975)
T COG5181 671 CSIYSVHRFRSMQPPISGILPSLTPILRNK-----HQKVVANTIALVGTICMNSPEYIGVREWMRICF-ELVDSLKSW-N 743 (975)
T ss_pred HHHhhhhcccccCCchhhccccccHhhhhh-----hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHh-h
Confidence 44444332 457788899999999999975 667777777788888887776432 2222222 234455533 5
Q ss_pred hhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCccccc
Q 000196 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVT 823 (1874)
Q Consensus 744 ~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~ 823 (1874)
.+.|.+|..++|.|.+..|. .+++..|++.|+.. ....|.-+--.+|++|-.
T Consensus 744 KeiRR~A~~tfG~Is~aiGP--------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~------------------- 795 (975)
T COG5181 744 KEIRRNATETFGCISRAIGP--------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEY------------------- 795 (975)
T ss_pred HHHHHhhhhhhhhHHhhcCH--------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhh-------------------
Confidence 67899999999999888764 26899999988754 233443332333333210
Q ss_pred ccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHH
Q 000196 824 RAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPD 903 (1874)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ 903 (1874)
.-+-.|+++||.--..|.. .++..+..|++.+|+..|.....|+-.|.|.
T Consensus 796 -----------------------------cgpfsVlP~lm~dY~TPe~-nVQnGvLkam~fmFeyig~~s~dYvy~itPl 845 (975)
T COG5181 796 -----------------------------CGPFSVLPTLMSDYETPEA-NVQNGVLKAMCFMFEYIGQASLDYVYSITPL 845 (975)
T ss_pred -----------------------------cCchhhHHHHHhcccCchh-HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 0012455666655544542 4567899999999999999888999999999
Q ss_pred HHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh-hh
Q 000196 904 LFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE-FR 982 (1874)
Q Consensus 904 ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~-f~ 982 (1874)
+-.++.+.++..|..+...+.-++-.. --.-..+..+.++.-.|.+.-.+.+ .....+...+++++.+++.. |-
T Consensus 846 leDAltDrD~vhRqta~nvI~Hl~Lnc--~gtg~eda~IHLlNllwpNIle~sP---hvi~~~~Eg~e~~~~~lg~g~~m 920 (975)
T COG5181 846 LEDALTDRDPVHRQTAMNVIRHLVLNC--PGTGDEDAAIHLLNLLWPNILEPSP---HVIQSFDEGMESFATVLGSGAMM 920 (975)
T ss_pred HHhhhcccchHHHHHHHHHHHHHhcCC--CCcccHHHHHHHHHHhhhhccCCCc---HHHHHHHHHHHHHHHHhccHHHH
Confidence 999999888877776654333332111 0012345566677777876532221 11225677888899998865 44
Q ss_pred cc
Q 000196 983 TH 984 (1874)
Q Consensus 983 ~y 984 (1874)
.|
T Consensus 921 ~Y 922 (975)
T COG5181 921 KY 922 (975)
T ss_pred HH
Confidence 44
No 25
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=2.2e-10 Score=147.48 Aligned_cols=443 Identities=15% Similarity=0.204 Sum_probs=294.6
Q ss_pred chhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHH
Q 000196 592 DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1874)
Q Consensus 592 ~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1874)
.||+ ..++|-|+..--|++..||.+...+|+.|.......+-.|+.+++.+++..+.+ ..+|.||.+|.+|.++++
T Consensus 993 ~p~l--~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~--kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen 993 EPYL--KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTS--KEWRVREASCLALADLLQ 1068 (1702)
T ss_pred hhHH--HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHc
Confidence 3454 357888888889999999999999999999876666778888888888888765 579999999999999998
Q ss_pred hCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHH---HHHHHHHHHhc-----ccchhhcHHhHHHHHHHHHhcCc
Q 000196 672 NCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGV---LVTVGDLARVG-----GFGMRQYISELMPLIVEALLDGA 742 (1874)
Q Consensus 672 ~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~---~~~l~~La~~~-----g~~~~~~~~~llp~l~~~l~d~~ 742 (1874)
.-+ +.+...++.+...+...+.|- ..+|+.++ +.+++.+.... |..-...++.++|.+++-=--..
T Consensus 1069 g~~~~~~~e~lpelw~~~fRvmDDI-----KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~ 1143 (1702)
T KOG0915|consen 1069 GRPFDQVKEKLPELWEAAFRVMDDI-----KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSK 1143 (1702)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccc
Confidence 754 345555666666666665553 45565443 45555544322 34456677778887776211123
Q ss_pred chhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcccCccchhhhcccCCCccc
Q 000196 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI-MGALDPHAHKRNQQLSGSHGE 821 (1874)
Q Consensus 743 ~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~-lgaldp~~~~~~~~~~~~~~~ 821 (1874)
-.++|..++.++-.++.+.|..+.||. |.|++.|++....-++..+-.-++++.++ ..|+|..+-.
T Consensus 1144 v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s----------- 1210 (1702)
T KOG0915|consen 1144 VNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRAS----------- 1210 (1702)
T ss_pred hHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHh-----------
Confidence 467999999999999999999999985 89999999998655566677777777554 2333322100
Q ss_pred ccccCCCCCCC-CCCccccccccCCCCCCCccchHHHHHHHHHHHccCC-CchhhHHHHHHHHHHHHHHhCCCCCCCccc
Q 000196 822 VTRAASDSGQH-IQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP-SLASYHQKVVGSLMFIFKSMGLGCVPYLPK 899 (1874)
Q Consensus 822 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~-s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ 899 (1874)
.....| ++.++... +..+.....-.++-+.+.++.. .+. ....+...+..+...+|.+.-||.++
T Consensus 1211 -----~aksspmmeTi~~ci-------~~iD~~vLeelip~l~el~R~sVgl~-Tkvg~A~fI~~L~~r~~~emtP~sgK 1277 (1702)
T KOG0915|consen 1211 -----AAKSSPMMETINKCI-------NYIDISVLEELIPRLTELVRGSVGLG-TKVGCASFISLLVQRLGSEMTPYSGK 1277 (1702)
T ss_pred -----hhcCCcHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHhccCCCC-cchhHHHHHHHHHHHhccccCcchhH
Confidence 000001 01111100 0011111122334444444432 121 12356677777888899999999999
Q ss_pred hhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh
Q 000196 900 VLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQ-HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN 978 (1874)
Q Consensus 900 ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~-~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~ 978 (1874)
++..++..+++.+++.+..+..++|-++....+ .+..++... +..++...+.+ +. ....++..|+.-..
T Consensus 1278 ll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~---l~~~l~k~es~------~s-iscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1278 LLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETL---LADLLGKDESL------KS-ISCATISNIANYSQ 1347 (1702)
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HHHHhccCCCc------cc-hhHHHHHHHHHhhH
Confidence 999999999998888888888888888876554 455555444 44455544311 12 44555555888999
Q ss_pred hhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhh-hhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhc
Q 000196 979 DEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE-HMHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057 (1874)
Q Consensus 979 ~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~-~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~ 1057 (1874)
+.++.|...++|++.=...+.++ ...+.-.++.+.++..|...-. |...++-.+|.-+..+.+..+|..+...+..++
T Consensus 1348 e~Lkn~asaILPLiFLa~~ee~K-a~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a 1426 (1702)
T KOG0915|consen 1348 EMLKNYASAILPLIFLAMHEEEK-ANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIA 1426 (1702)
T ss_pred HHHHhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc
Confidence 99999999999988655533211 1123334566666655544333 666677777766666678999999999999998
Q ss_pred cccc---ccchhHhHHHHHHHHhCCC
Q 000196 1058 PRVQ---VTGHISSLVHHLKLVLDGK 1080 (1874)
Q Consensus 1058 ~~~~---~~~~~~~ii~~l~~~l~~~ 1080 (1874)
.+.. ..|++-.+...+...+++.
T Consensus 1427 ~~~sss~~~p~ilkl~~~ll~~L~GR 1452 (1702)
T KOG0915|consen 1427 EGLSSSAPIPVILKLALSLLDTLNGR 1452 (1702)
T ss_pred ccccccCChHHHHHHHHHHHHHhhcc
Confidence 8733 2356777777777777654
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=3.1e-12 Score=148.70 Aligned_cols=368 Identities=15% Similarity=0.144 Sum_probs=260.3
Q ss_pred HHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchh
Q 000196 28 RILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENAS 106 (1874)
Q Consensus 28 ~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~ 106 (1874)
.+.++|.++..++|+ ||.||.+.|++...+-.-++..+.+.++.. +.+.+++.+.|.||+.|+.+..-..+.+..+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~---d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAG---DYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH---HhccCcccccccchHHHHHHHHHHhccccHH
Confidence 366788888888887 899999999988888777778887776665 7888999999999999999984333233444
Q ss_pred HHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCc------------------------chHHHHHHHHHH----
Q 000196 107 KVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAM------------------------TADEVEFQVKMA---- 157 (1874)
Q Consensus 107 ~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~-g~~------------------------~~~~v~~~~~~~---- 157 (1874)
.+.+..+-+..+|. +.|..|+-.|++.+..+++.. |.. .+++.+.+++..
T Consensus 81 Y~~~iv~Pv~~cf~-D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFS-DQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhcc-CccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 66666666667774 578999999999999888863 222 111111111111
Q ss_pred ---------HhhhcC---CCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 000196 158 ---------LDWLRG---DRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRV 224 (1874)
Q Consensus 158 ---------~~~l~~---~~~~~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~ 224 (1874)
++.|.+ ..+...|..-+.-|. +....|. -|..|++.+++.+++.|.|+++.||.-+-.++++++..
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~-~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e 238 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLY-VLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE 238 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 111110 112223333222222 2334555 68899999999999999999999999999999999988
Q ss_pred HhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhH-HHHHHHH
Q 000196 225 IEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRL-VRLSITS 303 (1874)
Q Consensus 225 i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~-vr~~~~~ 303 (1874)
|....... -+..+.+.+...+.++. .+.+.-|+..+.+++...|..+.+++..++..++.+..+.++. ++..+..
T Consensus 239 I~s~P~s~---d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~ 314 (675)
T KOG0212|consen 239 IRSSPSSM---DYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQM 314 (675)
T ss_pred HhcCcccc---CcccchhhccccccCCc-HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHH
Confidence 77422111 24556666777777774 6778888999999999999989999999999999998877664 6655433
Q ss_pred HhHhHhh-----hChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCC
Q 000196 304 LLPRIAH-----FLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRG 376 (1874)
Q Consensus 304 ~i~~la~-----~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~ 376 (1874)
.-+.+-. ..++++ -+..++..+...+.+.. .|..++..+..+-...+.++..+.++|.+.+...|.+.++
T Consensus 315 ~n~~l~~l~s~~~~~~~i---d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 315 VNGLLLKLVSSERLKEEI---DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHHhhhhhcccc---chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh
Confidence 3332221 112221 23688888888887654 5889999999999999999999999999999999987765
Q ss_pred CCCchhHHHHHHHHHHhCC-CchHHHHHHHHH
Q 000196 377 KPSLEALACVGNIARAMGP-VMEPHVRGLLDI 407 (1874)
Q Consensus 377 ~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ 407 (1874)
.+-..++..++.+|..-.. ...+++.++++.
T Consensus 392 ~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSNSPNLRKFLLSLLEM 423 (675)
T ss_pred HHHHHHHHHHHHHhcCcccccHHHHHHHHHHH
Confidence 5444566666666665443 466777777764
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=9.1e-12 Score=149.35 Aligned_cols=375 Identities=15% Similarity=0.150 Sum_probs=249.7
Q ss_pred ccccccCCCCC-CCCCCcHHHHHHHHHHHcCC-C-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-C
Q 000196 6 QSLRYIGPPAP-GAGGGSLDALNRILADLCTH-G-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-N 81 (1874)
Q Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~s~-~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~ 81 (1874)
+..--|+||.. -.++.+.+.+...+..+.+. . .++.+|+.++..+|....-+.-.+ .. +...+.+.+.. .
T Consensus 114 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--~~----~l~~l~~ai~dk~ 187 (569)
T KOG1242|consen 114 RAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE--FG----FLDNLSKAIIDKK 187 (569)
T ss_pred HHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh--hh----HHHHHHHHhcccc
Confidence 34456999998 66777777666666666543 2 466679999999985554433222 12 33334444544 4
Q ss_pred ChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhh
Q 000196 82 DAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDW 160 (1874)
Q Consensus 82 ~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~ 160 (1874)
....|.++..|+..+....+....+.+..+.+.+...+ .+.+..|+..|..+...+... .......++++.+....+
T Consensus 188 ~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~- 265 (569)
T KOG1242|consen 188 SALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNF-GDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLE- 265 (569)
T ss_pred hhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHh-hccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHH-
Confidence 45566689999999977653222334444444444444 245688999888888887764 222233454544444433
Q ss_pred hcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 000196 161 LRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRM 240 (1874)
Q Consensus 161 l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i 240 (1874)
. .|+.+.+++..++.+++++|.++.-++++++|.+...|.|.++.||+++.+++..+.+++.+.+ ...+
T Consensus 266 ---~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-------I~~~ 334 (569)
T KOG1242|consen 266 ---A-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-------IQKI 334 (569)
T ss_pred ---H-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-------HHHH
Confidence 3 7899999999999999999999999999999999999999999999999999999988776433 6788
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC--hhhHHH
Q 000196 241 FEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL--RDRFVT 318 (1874)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~--~~~f~~ 318 (1874)
+|.+.+++.++. ..+. .++..|+.--. -...-.|-+.-+++.|-+.++.++..+++.++.+++.++..- +.. +.
T Consensus 335 ip~Lld~l~dp~-~~~~-e~~~~L~~ttF-V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~-la 410 (569)
T KOG1242|consen 335 IPTLLDALADPS-CYTP-ECLDSLGATTF-VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD-LA 410 (569)
T ss_pred HHHHHHHhcCcc-cchH-HHHHhhcceee-eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH-Hh
Confidence 899999998874 2222 22222221100 011122556666777778888999999999999999998755 433 45
Q ss_pred HHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC-CchhHHHHHHHHHHhCC
Q 000196 319 NYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP-SLEALACVGNIARAMGP 395 (1874)
Q Consensus 319 ~yl~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~-~~~a~~~l~~l~~~~g~ 395 (1874)
.|++.++|.+...+..+ ..|..+..++|.+-+.+|.. +.++..+.+.+.+....... +..+.+.++.+...+|.
T Consensus 411 pfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v 487 (569)
T KOG1242|consen 411 PFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV 487 (569)
T ss_pred hhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc
Confidence 69999999999888764 46999999999999999874 23566666666654332222 22344455554444442
Q ss_pred CchHHHHHHHHHHH
Q 000196 396 VMEPHVRGLLDIMF 409 (1874)
Q Consensus 396 ~~~p~l~~ll~~ll 409 (1874)
.++...++.++
T Consensus 488 ---~~~~~~~~~~~ 498 (569)
T KOG1242|consen 488 ---EKVEDILPEIL 498 (569)
T ss_pred ---hHHHHHHHHHH
Confidence 34444444443
No 28
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.5e-10 Score=138.97 Aligned_cols=316 Identities=18% Similarity=0.202 Sum_probs=222.9
Q ss_pred cHHHHHHHHHHHcCCCCchhhH-HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000196 22 SLDALNRILADLCTHGNPKEGA-SLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~~~~~~a-a~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~ 100 (1874)
.-..+.+++..|.+++...++| +..|...+... ...+++.+ ...+.+++++....+|.|+..++..++...
T Consensus 94 ~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~-~~~~~~~~-------l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~ 165 (569)
T KOG1242|consen 94 PISIIEILLEELDTPSKSVQRAVSTCLPPLVVLS-KGLSGEYV-------LELLLELLTSTKIAERAGAAYGLAGLVNGL 165 (569)
T ss_pred hhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHh-hccCHHHH-------HHHHHHHhccccHHHHhhhhHHHHHHHcCc
Confidence 3457888899998887666654 33344443222 23333322 334456777888899999999999888664
Q ss_pred cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHH
Q 000196 101 LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180 (1874)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~l 180 (1874)
.... ..+... +......+++.+...+|.++..+....
T Consensus 166 ~i~~-----------------~~~~~~--------------------------l~~l~~ai~dk~~~~~re~~~~a~~~~ 202 (569)
T KOG1242|consen 166 GIES-----------------LKEFGF--------------------------LDNLSKAIIDKKSALNREAALLAFEAA 202 (569)
T ss_pred HHhh-----------------hhhhhH--------------------------HHHHHHHhcccchhhcHHHHHHHHHHH
Confidence 2210 000111 111112222333334556888888888
Q ss_pred HhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHH
Q 000196 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGS 260 (1874)
Q Consensus 181 a~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~a 260 (1874)
..+.+..+.||+..++|.|+..+.|..+.||+||.+|..+++..+.. +-.+.+++.++.++... .|+.+.++
T Consensus 203 ~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~-------~aVK~llpsll~~l~~~-kWrtK~as 274 (569)
T KOG1242|consen 203 QGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA-------YAVKLLLPSLLGSLLEA-KWRTKMAS 274 (569)
T ss_pred HHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc-------chhhHhhhhhHHHHHHH-hhhhHHHH
Confidence 88888999999999999999999999999999999999998876552 23456677777666655 59999999
Q ss_pred HHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---------------------------
Q 000196 261 LLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--------------------------- 313 (1874)
Q Consensus 261 l~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~--------------------------- 313 (1874)
+..+|.+..+.+..+...+.++.+.+-..+-+..+.||++...++-.+.....
T Consensus 275 lellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~ 354 (569)
T KOG1242|consen 275 LELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLD 354 (569)
T ss_pred HHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHH
Confidence 99999999999988888999999998888889999999998777766553221
Q ss_pred ----hhHHHH----HHHHHHHHHHHhhcC--CCCcchHHHHHHHHHhhc--hhhhhhhhHHHHHHHHHhhcCCCCCCCch
Q 000196 314 ----DRFVTN----YLKICMNHILTVLRI--PAERDSGFIALGEMAGAL--DGELFHYLPTITSHLREAIAPRRGKPSLE 381 (1874)
Q Consensus 314 ----~~f~~~----yl~~~~~~Ll~~L~~--~~~R~~a~~alg~la~~v--~~~~~p~l~~i~~~l~~~L~~~~~~~~~~ 381 (1874)
.+|+.. -+.-++|.|..-+.. ...+..+...+|+++.-+ ..++.||++.+++.++..+.+..++++..
T Consensus 355 ~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 355 SLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred hhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHH
Confidence 123221 122223333222221 112357889999999999 45788999999999999998877777788
Q ss_pred hHHHHHHHHHHhCCC
Q 000196 382 ALACVGNIARAMGPV 396 (1874)
Q Consensus 382 a~~~l~~l~~~~g~~ 396 (1874)
+..+++.+.+..|..
T Consensus 435 aarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 435 AARALGALLERLGEV 449 (569)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999974
No 29
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=2.8e-07 Score=108.33 Aligned_cols=418 Identities=15% Similarity=0.137 Sum_probs=258.2
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000196 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1874)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1874)
.|.++|.|.-.+=|.||+--+.......-+ .....++.++++.+...+..+.....+.|++..+.+..-+-|..-.+
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~---~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~ 80 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVN---NNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG 80 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHc---cCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH
Confidence 467899999999999999888766553332 12346788888877665443222334669998888876655555556
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhh
Q 000196 278 RYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGE 355 (1874)
Q Consensus 278 ~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~~ 355 (1874)
|.+.++.-++.++.+.+..||--+|..+-.+|..+..++.. |++.+...+...-... ..|+.|=..-+.+-..|-+.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~-~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV-YFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc-chHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999888877654 7788888777765443 23444332222222222211
Q ss_pred hhh-hhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHH
Q 000196 356 LFH-YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPT 434 (1874)
Q Consensus 356 ~~p-~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~ 434 (1874)
-.. .++.+++.+++-+-..++.. ..|+-.=+.. -...|+
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~t-------------------R~flv~Wl~~-----------------Lds~P~---- 199 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMT-------------------RQFLVSWLYV-----------------LDSVPD---- 199 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchH-------------------HHHHHHHHHH-----------------HhcCCc----
Confidence 101 23445555554442211100 0011000000 000000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCC
Q 000196 435 IQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDE 514 (1874)
Q Consensus 435 i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~ 514 (1874)
+++++ ..|.+.+-+..++.|+
T Consensus 200 ---------------------------------------------------~~m~~--------yl~~~ldGLf~~LsD~ 220 (675)
T KOG0212|consen 200 ---------------------------------------------------LEMIS--------YLPSLLDGLFNMLSDS 220 (675)
T ss_pred ---------------------------------------------------HHHHh--------cchHHHHHHHHHhcCC
Confidence 01111 1233344455677888
Q ss_pred ChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh
Q 000196 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF 594 (1874)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~ 594 (1874)
+++||..+-.++..++ ....++|+. ++
T Consensus 221 s~eVr~~~~t~l~~fL------------------------------------~eI~s~P~s---------------~d-- 247 (675)
T KOG0212|consen 221 SDEVRTLTDTLLSEFL------------------------------------AEIRSSPSS---------------MD-- 247 (675)
T ss_pred cHHHHHHHHHHHHHHH------------------------------------HHHhcCccc---------------cC--
Confidence 8899864433322222 111233321 01
Q ss_pred hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
-.+.++.+..-++.+++.++..|+.-+..+++..|..++|++.+++...+..+.++ .....++.+...=+.+.+-+.
T Consensus 248 --~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s 324 (675)
T KOG0212|consen 248 --YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVS 324 (675)
T ss_pred --cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHh
Confidence 02346666667778889999999999999999999999999998887777666554 222234444333333332221
Q ss_pred c-ccc--cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHH
Q 000196 675 R-LIR--PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAV 751 (1874)
Q Consensus 675 ~-~~~--py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~ 751 (1874)
. ..+ --+.+|++++.+.+.++ ....+.+++.=+-.+-...|.++..|.+++++.++..|.|. +.++-..++
T Consensus 325 ~~~~~~~id~~~ii~vl~~~l~~~-----~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L 398 (675)
T KOG0212|consen 325 SERLKEEIDYGSIIEVLTKYLSDD-----REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR-SDEVVLLAL 398 (675)
T ss_pred hhhhccccchHHHHHHHHHHhhcc-----hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc-hhHHHHHHH
Confidence 1 111 12348999999998875 44556677777777778889999999999999999999997 566777788
Q ss_pred HHHHHHHhhccccccccccchHHHHHHHHHhcCC
Q 000196 752 STLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE 785 (1874)
Q Consensus 752 ~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~ 785 (1874)
..++.+|...... ++-..+..|+++.+.+
T Consensus 399 ~lla~i~~s~~~~-----~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 399 SLLASICSSSNSP-----NLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHhcCcccc-----cHHHHHHHHHHHHhhh
Confidence 8888888766432 3345666667766544
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.14 E-value=1.2e-07 Score=124.44 Aligned_cols=417 Identities=16% Similarity=0.159 Sum_probs=242.0
Q ss_pred HHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChH
Q 000196 47 LRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDRE 126 (1874)
Q Consensus 47 l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~ 126 (1874)
+.+++--. +.+..+.. +...+.+++.+++...|.-|-+++..+..... ..+.-..|.+.+=+. ++++.
T Consensus 27 l~kli~~~---~~G~~~~~----~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~-~~n~~ 94 (526)
T PF01602_consen 27 LKKLIYLM---MLGYDISF----LFMEVIKLISSKDLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLN-SPNPY 94 (526)
T ss_dssp HHHHHHHH---HTT---GS----THHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHC-SSSHH
T ss_pred HHHHHHHH---HcCCCCch----HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhc-CCCHH
Confidence 66666333 34444432 34455678889999999999999998876542 223335667777665 56889
Q ss_pred HHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCC
Q 000196 127 ILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDP 206 (1874)
Q Consensus 127 v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~ 206 (1874)
++..|-++++.+. .++..+..++.+.+.+. ++++..|.+|++++..+....|+.+... +++.+...|.|+
T Consensus 95 ~~~lAL~~l~~i~------~~~~~~~l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~ 164 (526)
T PF01602_consen 95 IRGLALRTLSNIR------TPEMAEPLIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDK 164 (526)
T ss_dssp HHHHHHHHHHHH-------SHHHHHHHHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHS
T ss_pred HHHHHHhhhhhhc------ccchhhHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCC
Confidence 9999999999976 35666666776766665 4555888899999999999988876544 677888889999
Q ss_pred chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChh-----------------HH--HHHHHHHHHH
Q 000196 207 TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVH-----------------SI--HGSLLAVGEL 267 (1874)
Q Consensus 207 ~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~-----------------~~--~~al~~l~~l 267 (1874)
++.|+.+|..++..+ . ..++........++..+.+.+..+++|. .. ...+..+..+
T Consensus 165 ~~~V~~~a~~~l~~i-~----~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~ 239 (526)
T PF01602_consen 165 DPSVVSAALSLLSEI-K----CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNL 239 (526)
T ss_dssp SHHHHHHHHHHHHHH-H----CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH-c----cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHH
Confidence 999999999988877 1 1111100233344444433333333232 11 1111122222
Q ss_pred HHcchh---------h-----hHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000196 268 LRNTGE---------F-----MMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1874)
Q Consensus 268 l~~~~~---------~-----~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1874)
+...+. + -.+....++..+..++.++++.+|..++..+..++...+..+ . +... ....+.
T Consensus 240 l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v-~-~~~~----~~~~l~ 313 (526)
T PF01602_consen 240 LQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV-F-NQSL----ILFFLL 313 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH-G-THHH----HHHHHH
T ss_pred hhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh-h-hhhh----hhheec
Confidence 211110 0 001233445555566666666666666666666665442211 1 1011 111222
Q ss_pred CCC---CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCC-CCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000196 334 IPA---ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR-RGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1874)
Q Consensus 334 ~~~---~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~-~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll 409 (1874)
..+ -|..++..+..++..-. ...|++.+...+.+. +...+..++..++.++..+.+....+++.+++.+-
T Consensus 314 ~~~d~~Ir~~~l~lL~~l~~~~n------~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~ 387 (526)
T PF01602_consen 314 YDDDPSIRKKALDLLYKLANESN------VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE 387 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--HHH------HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHhhcccccc------hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh
Confidence 211 24555555555543221 223444445555211 22234578899999999998888889988888776
Q ss_pred hcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHH
Q 000196 410 SAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQ 487 (1874)
Q Consensus 410 ~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~ 487 (1874)
..+ ...+....+..+....|.....+-..+.+.+.. ..+++....++.
T Consensus 388 ~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~------------------------------~~~~~~~~~~~w 437 (526)
T PF01602_consen 388 ISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLED------------------------------ISSPEALAAAIW 437 (526)
T ss_dssp CTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS------------------------------SSSHHHHHHHHH
T ss_pred hccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH------------------------------hhHHHHHHHHHh
Confidence 433 555666777788788888766666666555431 113335678999
Q ss_pred hhcccccC-CC--cchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhcc
Q 000196 488 TLARFNFK-GH--DLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANS 533 (1874)
Q Consensus 488 ~L~~~~f~-~~--~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~ 533 (1874)
++|+|... +. ....+++.++.. ....++.||.....++.++....
T Consensus 438 ilGEy~~~~~~~~~~~~~~~~l~~~-~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 438 ILGEYGELIENTESAPDILRSLIEN-FIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp HHHHHCHHHTTTTHHHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHHHHS
T ss_pred hhcccCCcccccccHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHhhC
Confidence 99998321 11 122333333333 33345778888777787877543
No 31
>PTZ00429 beta-adaptin; Provisional
Probab=99.12 E-value=1.1e-06 Score=114.02 Aligned_cols=444 Identities=13% Similarity=0.084 Sum_probs=251.6
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcc
Q 000196 25 ALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGEN 104 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~ 104 (1874)
.+..|-+.|.+++..+++ ..+.+++...... +....++.++. +++.+++...|+=+-+.+..+....
T Consensus 33 e~~ELr~~L~s~~~~~kk--~alKkvIa~mt~G---~DvS~LF~dVv----k~~~S~d~elKKLvYLYL~~ya~~~---- 99 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKK--AAVKRIIANMTMG---RDVSYLFVDVV----KLAPSTDLELKKLVYLYVLSTARLQ---- 99 (746)
T ss_pred hHHHHHHHHHCCCHHHHH--HHHHHHHHHHHCC---CCchHHHHHHH----HHhCCCCHHHHHHHHHHHHHHcccC----
Confidence 345566777776543332 2266666444333 33444444444 5788889988887777777665432
Q ss_pred hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhc
Q 000196 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENA 184 (1874)
Q Consensus 105 ~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~ 184 (1874)
+....-..|.+++=+. +.++.+|..|-++++.+-. +++++..+..+-..+ .+++.-.|.+|++++..+-...
T Consensus 100 pelalLaINtl~KDl~-d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 100 PEKALLAVNTFLQDTT-NSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred hHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhC
Confidence 2222333566666554 4688999999999987643 445555544444444 3566677888888888888888
Q ss_pred CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000196 185 STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAV 264 (1874)
Q Consensus 185 p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l 264 (1874)
|+.+.. ..+++.+...|.|+++.|...|..+|..+... .+. .-......+..++..+.+-++|-+. .+|
T Consensus 172 pelv~~--~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~----~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi----~IL 240 (746)
T PTZ00429 172 MQLFYQ--QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY----GSE-KIESSNEWVNRLVYHLPECNEWGQL----YIL 240 (746)
T ss_pred cccccc--cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh----Cch-hhHHHHHHHHHHHHHhhcCChHHHH----HHH
Confidence 876431 13444555668999999988888877766431 111 1122344455556666554456533 455
Q ss_pred HHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC-CCcchHHH
Q 000196 265 GELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP-AERDSGFI 343 (1874)
Q Consensus 265 ~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~-~~R~~a~~ 343 (1874)
+.|....+.. ......++..+...++|.|+.|--+++.++-.+..+...+..+..+..+-+-++..+.++ ..|-.++.
T Consensus 241 ~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr 319 (746)
T PTZ00429 241 ELLAAQRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSRRDAETQYIVCK 319 (746)
T ss_pred HHHHhcCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHH
Confidence 5555532211 223456888888889999999998888888777655433344444444444444444433 34667777
Q ss_pred HHHHHHhhchhhhhhhhHH------------------------------HHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 344 ALGEMAGALDGELFHYLPT------------------------------ITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 344 alg~la~~v~~~~~p~l~~------------------------------i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
.|..++..-+.-+.+++.. |+..+.++..+.+......++.++|.+|..+
T Consensus 320 ~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~ 399 (746)
T PTZ00429 320 NIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV 399 (746)
T ss_pred HHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC
Confidence 7777766555444333321 2222223332221111246889999999877
Q ss_pred CCCchHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000196 394 GPVMEPHVRGLLDIMFSAG-LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1874)
Q Consensus 394 g~~~~p~l~~ll~~ll~~~-ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1874)
.......++.+++.+-... ...+....++++.+..|.. .+...+.+.+ ..
T Consensus 400 ~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~--~il~~L~~~~----~~----------------------- 450 (746)
T PTZ00429 400 DSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL--LMLDTLVTDY----GA----------------------- 450 (746)
T ss_pred hHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH--HHHHHHHHhh----cc-----------------------
Confidence 6555556666665543211 2223445666666666652 1222222110 00
Q ss_pred ccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhcc
Q 000196 473 VSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANS 533 (1874)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~-f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~ 533 (1874)
++..+.+.++..+.+||+|. +-+. -..+++..+..+.+ ++..||.+...++.+++...
T Consensus 451 -~~i~e~~AKaaiiWILGEy~~~I~~-a~~~L~~~i~~f~~-E~~~VqlqlLta~vKlfl~~ 509 (746)
T PTZ00429 451 -DEVVEEEAKVSLLWMLGEYCDFIEN-GKDIIQRFIDTIME-HEQRVQLAILSAAVKMFLRD 509 (746)
T ss_pred -cccccHHHHHHHHHHHHhhHhhHhh-HHHHHHHHHhhhcc-CCHHHHHHHHHHHHHHHhcC
Confidence 11224445566688999983 2111 12333343333333 46789988888888888654
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.03 E-value=6e-08 Score=127.24 Aligned_cols=438 Identities=17% Similarity=0.148 Sum_probs=254.9
Q ss_pred HHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 000196 503 ARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIF 582 (1874)
Q Consensus 503 v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l 582 (1874)
+-..+.+-+.++++.+|-.|..+++.+..+ .++..+++.+ ...+.|+++.||+.++
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-----------------------~~~~~l~~~v-~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP-----------------------EMAEPLIPDV-IKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-----------------------HHHHHHHHHH-HHHHHSSSHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc-----------------------chhhHHHHHH-HHHhcCCchHHHHHHH
Confidence 334455667889999999998888887532 2233333333 3346799999999988
Q ss_pred HhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHH
Q 000196 583 SSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREES 662 (1874)
Q Consensus 583 ~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a 662 (1874)
.++..-...++.+....+++.+..++.|+++.|+.+|+.++..+ +.+|....+.++.....+...+ .. .++-.+...
T Consensus 136 ~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l-~~-~~~~~q~~i 212 (526)
T PF01602_consen 136 LALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLL-SD-PDPWLQIKI 212 (526)
T ss_dssp HHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHH-TC-CSHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcc-cc-cchHHHHHH
Confidence 88741111123222122588888999999999999999999999 5555432233333222222222 33 455555555
Q ss_pred HHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCc
Q 000196 663 AKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA 742 (1874)
Q Consensus 663 ~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~ 742 (1874)
++++..++...+..... ..+++.+.+.+... ++.|.-.++.++-.+ .+. .+.+..+++.+...+.+.
T Consensus 213 l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~-----~~~V~~e~~~~i~~l---~~~--~~~~~~~~~~L~~lL~s~- 279 (526)
T PF01602_consen 213 LRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS-----SPSVVYEAIRLIIKL---SPS--PELLQKAINPLIKLLSSS- 279 (526)
T ss_dssp HHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH---SSS--HHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHhcccCChhhhhH--HHHHHHHHHHhhcc-----ccHHHHHHHHHHHHh---hcc--hHHHHhhHHHHHHHhhcc-
Confidence 55555443322221100 45777777777753 566665555444433 222 126778899999999854
Q ss_pred chhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccc
Q 000196 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEV 822 (1874)
Q Consensus 743 ~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~ 822 (1874)
+...|-.|+.+|..++......+. .+. ..+..+..+++..+|..++.++..++- +.
T Consensus 280 ~~nvr~~~L~~L~~l~~~~~~~v~----~~~---~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~--------------- 335 (526)
T PF01602_consen 280 DPNVRYIALDSLSQLAQSNPPAVF----NQS---LILFFLLYDDDPSIRKKALDLLYKLAN--ES--------------- 335 (526)
T ss_dssp SHHHHHHHHHHHHHHCCHCHHHHG----THH---HHHHHHHCSSSHHHHHHHHHHHHHH----HH---------------
T ss_pred cchhehhHHHHHHHhhcccchhhh----hhh---hhhheecCCCChhHHHHHHHHHhhccc--cc---------------
Confidence 677999999999999877622221 111 223344555678999999998877641 00
Q ss_pred cccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhH
Q 000196 823 TRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLP 902 (1874)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp 902 (1874)
-...+++.|+..+.+.+..+....++.++..+.... .+..+.++.
T Consensus 336 -------------------------------n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~----~~~~~~~v~ 380 (526)
T PF01602_consen 336 -------------------------------NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKF----PPDAEWYVD 380 (526)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH----GSSHHHHHH
T ss_pred -------------------------------chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhcc----CchHHHHHH
Confidence 013456667777754433446677888888887766 345677888
Q ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh
Q 000196 903 DLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR 982 (1874)
Q Consensus 903 ~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~ 982 (1874)
.++..+....+.....+...+..++....+.- ..++..+.+....... ..++..+.++..-.++.+.
T Consensus 381 ~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~----~~~l~~L~~~l~~~~~---------~~~~~~~~wilGEy~~~~~ 447 (526)
T PF01602_consen 381 TLLKLLEISGDYVSNEIINVIRDLLSNNPELR----EKILKKLIELLEDISS---------PEALAAAIWILGEYGELIE 447 (526)
T ss_dssp HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH----HHHHHHHHHHHTSSSS---------HHHHHHHHHHHHHHCHHHT
T ss_pred HHHHhhhhccccccchHHHHHHHHhhcChhhh----HHHHHHHHHHHHHhhH---------HHHHHHHHhhhcccCCccc
Confidence 88888887666666555555555543322111 2233334444433221 1345555555444444444
Q ss_pred c--cchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhhhhhHHHHHHhhc-CCCcHHHHHHHHHHHHhh
Q 000196 983 T--HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHMHLLLPALIRLFK-VDAPVDIRRAAIETLTRL 1056 (1874)
Q Consensus 983 ~--yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~~~ilp~l~~~~~-~~~~~~vr~~ai~~l~~l 1056 (1874)
. ..+.++..+.+.+.+. ...+...++.++..+....+ +....+++.+.+... ++.+.+||+.|...+.-+
T Consensus 448 ~~~~~~~~~~~l~~~~~~~----~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 448 NTESAPDILRSLIENFIEE----SPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp TTTHHHHHHHHHHHHHTTS----HHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhhccc----cHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 4 5666677666666431 23456677888877654433 222345555555554 245788888887766544
No 33
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=0.00015 Score=89.78 Aligned_cols=681 Identities=17% Similarity=0.223 Sum_probs=360.0
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHh-h---
Q 000196 109 SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-RVEYRRFAAVLILKEMAE-N--- 183 (1874)
Q Consensus 109 ~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~-~~~~~r~aA~~~l~~la~-~--- 183 (1874)
....+||.+.+. .|+.+++.|-++|..+..-.| ..- .++..+.++ -+...|+||...++--.. +
T Consensus 5 e~l~~~l~qTl~--pdps~rk~aEr~L~~~e~q~~-y~l--------~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~ 73 (960)
T KOG1992|consen 5 ETLANYLLQTLS--PDPSVRKPAERALRSLEGQQN-YPL--------LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIP 73 (960)
T ss_pred HHHHHHHHhcCC--CCCccCchHHHHHHHhccCCC-chH--------HHHHHHhccCcChhHHHHHHHHHHHHHHhccCc
Confidence 346778888874 489999999998877654321 111 122233222 366889999999988766 2
Q ss_pred ---cCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHH
Q 000196 184 ---AST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHG 259 (1874)
Q Consensus 184 ---~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 259 (1874)
.|. ....--..|...|+..+-.....|+..=.+|+. .+.+++ +- +--+.+++++...+++. |-.+..|
T Consensus 74 ~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~----~Ig~~D--FP-~kWptLl~dL~~~ls~~-D~~~~~g 145 (960)
T KOG1992|consen 74 AEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALS----LIGKRD--FP-DKWPTLLPDLVARLSSG-DFNVING 145 (960)
T ss_pred CCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH----HHhccc--cc-hhhHHHHHHHHhhcccc-chHHHHH
Confidence 232 233456667778888887777777666555554 455443 22 22357888888888865 3555666
Q ss_pred HHHHHHHHHHc------ch------hhhHHHHHHHHHHHHHH----hh-c-chhH-------HHHHHHHHhHhHhhhChh
Q 000196 260 SLLAVGELLRN------TG------EFMMSRYREVAEIVLRY----LE-H-RDRL-------VRLSITSLLPRIAHFLRD 314 (1874)
Q Consensus 260 al~~l~~ll~~------~~------~~~~~~~~~i~~~ll~~----~~-~-~~~~-------vr~~~~~~i~~la~~~~~ 314 (1874)
.+..-..+... +. .+...++.+-+..+++. .+ + .+.. |...++.+.-++..-+-.
T Consensus 146 VL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiP 225 (960)
T KOG1992|consen 146 VLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIP 225 (960)
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccch
Confidence 55554444431 11 11222222222222221 11 1 1111 111222333333333445
Q ss_pred hHHHHHHHHHHHHHHHhhcC--C-----C--------CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCC
Q 000196 315 RFVTNYLKICMNHILTVLRI--P-----A--------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379 (1874)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~--~-----~--------~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~ 379 (1874)
+|.+..++.-|+...+.|+. + + .|....+.+...+....+++.||+++++...+.-|......++
T Consensus 226 EFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~k 305 (960)
T KOG1992|consen 226 EFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTK 305 (960)
T ss_pred HHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCcc
Confidence 67777889999998888762 1 1 1456677777777778888999999999999998865544443
Q ss_pred -----chhHHHHHHHHHHhCC--Cch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000196 380 -----LEALACVGNIARAMGP--VME--PHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1874)
Q Consensus 380 -----~~a~~~l~~l~~~~g~--~~~--p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1874)
..|++++..+++.-.- -|. ..+..+.+.+.-..+ .+++...++.+ +.-++.+..-+.|
T Consensus 306 yD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~--~lR~eDeElFE----------D~pleYiRRDlEG- 372 (960)
T KOG1992|consen 306 YDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNL--ILREEDEELFE----------DNPLEYIRRDLEG- 372 (960)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhccccc--ccchhhHHHhc----------cCHHHHHHHhccc-
Confidence 2467777777664211 010 111111111110000 00111111111 0011222111111
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc--ccCCC---cchhhHHHHHhhhccCCChH--HHHHHH
Q 000196 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF--NFKGH---DLLEFARDSVVLYLDDEDKA--TRKDAA 523 (1874)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~--~f~~~---~l~~~v~~~~~~~l~~~~~~--VR~aAa 523 (1874)
+|. +.....|++.++.+ .|.+. .+..++...+..|..+|+.+ -...|.
T Consensus 373 -----------------------sDv--dTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~ai 427 (960)
T KOG1992|consen 373 -----------------------SDV--DTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAI 427 (960)
T ss_pred -----------------------CCc--chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhh
Confidence 111 11346788888877 46543 23345555556666666432 222233
Q ss_pred HHhHHhhhcc---CCCCcccccccccccccccchhHH----HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc
Q 000196 524 LCCCKLVANS---FSGVSFTQFGASRSNRTGGKRRRL----IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA 596 (1874)
Q Consensus 524 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~ 596 (1874)
..+..+..+. ..|+. .+. ....+ ...+++.|....+ .+.|.++..+++-.- .|-..+.
T Consensus 428 yL~talaik~~t~~~Gvt----------stn-~lvdv~~Ff~~~ilp~L~s~~v-n~~pilka~aIKy~~---~FR~ql~ 492 (960)
T KOG1992|consen 428 YLVTALAIKGQTAKHGVT----------STN-ELVDVVDFFANQILPDLLSPNV-NEFPILKADAIKYIY---TFRNQLG 492 (960)
T ss_pred hhhHHHHhhcchhhccee----------ecc-ccccHHHHHHHHhhHHhccCcc-ccccchhhcccceee---eecccCC
Confidence 3333332221 11110 010 01222 2233333332111 233445555554331 2333333
Q ss_pred cH---hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC---------cCccchHHHHHHHHHHHHHhhCCCChHhHHHHHH
Q 000196 597 QA---DCLSAIFAALNDEDFDVREYAISVAGRLSEKN---------PAYVLPALRRHLIQLLTYLEQSSADNKCREESAK 664 (1874)
Q Consensus 597 ~~---~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~---------p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~ 664 (1874)
.+ ..++.+...+.-++..|-.-|..++.++-... |..+.|+....+.+++..+... + ...-+...+
T Consensus 493 ~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p-~-~~EneylmK 570 (960)
T KOG1992|consen 493 KEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLP-G-KAENEYLMK 570 (960)
T ss_pred hHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCC-c-ccccHHHHH
Confidence 22 35677778888888888888888777754322 2234566666666666555433 2 244567788
Q ss_pred HHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc----cchhhcHHhHHHHHHHHHhc
Q 000196 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG----FGMRQYISELMPLIVEALLD 740 (1874)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g----~~~~~~~~~llp~l~~~l~d 740 (1874)
++-.++.-.++.+.||.+.++..|.+.+...+.-..+|..-...++++|.+....+ ..+..+...++|.+...|+.
T Consensus 571 aImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 571 AIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE 650 (960)
T ss_pred HHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999988888766432212355555666777777665443 45678889999999998863
Q ss_pred CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHH---HHHHHHHHhcccCccchhhhcccCC
Q 000196 741 GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR---EVLKVLGIMGALDPHAHKRNQQLSG 817 (1874)
Q Consensus 741 ~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~---~al~~lg~lgaldp~~~~~~~~~~~ 817 (1874)
. -.+----++.-++.+++..+..+- ..|..+++.|+ ++.-|+.+- +.++++-.+---+|..
T Consensus 651 D-I~EfiPYvfQlla~lve~~~~~ip--~~~~~l~~~lL----sp~lW~r~gNipalvrLl~aflk~g~~~--------- 714 (960)
T KOG1992|consen 651 D-IQEFIPYVFQLLAVLVEHSSGTIP--DSYSPLFPPLL----SPNLWKRSGNIPALVRLLQAFLKTGSQI--------- 714 (960)
T ss_pred H-HHHHHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHhc----CHHHHhhcCCcHHHHHHHHHHHhcCchh---------
Confidence 2 112223567888888888876321 11223444333 333333332 2222222110000000
Q ss_pred CcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC-CCCC
Q 000196 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPY 896 (1874)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~-~~~~ 896 (1874)
. .. .++ ..-++..+-+..-.++. +|| .+.-+.+|+....+. ..||
T Consensus 715 -----------~----~~---------------~~~-l~~iLGifqkLiaSka~-Dh~--GF~LLn~i~~~~~~~~~~py 760 (960)
T KOG1992|consen 715 -----------V----EA---------------ADK-LSGILGIFQKLIASKAN-DHH--GFYLLNTIIESIPPNELAPY 760 (960)
T ss_pred -----------h----cc---------------ccc-chhHHHHHHHHhcCccc-chh--HHHHHHHHHhcCCHhhhhHH
Confidence 0 00 000 02233333344434433 233 455677777776554 4689
Q ss_pred ccchhHHHHHHHhcCCc
Q 000196 897 LPKVLPDLFHTVRTCDD 913 (1874)
Q Consensus 897 l~~ilp~ll~~l~~~~~ 913 (1874)
+.+|.-.+++.++++..
T Consensus 761 ~k~i~~llf~RlqnskT 777 (960)
T KOG1992|consen 761 MKQIFGLLFQRLQNSKT 777 (960)
T ss_pred HHHHHHHHHHHHhccCc
Confidence 99999999999998753
No 34
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=0.0004 Score=88.35 Aligned_cols=297 Identities=15% Similarity=0.125 Sum_probs=167.0
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc---cc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE---RL 676 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~---~~ 676 (1874)
++.-++-.++++.--.|..|++++++++...-. -...+++.+....+.+.++ .+.-.|-+|+-+|..+++++. +.
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~-d~~~l~~ale~t~~~l~~d-~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSIDFK-DPNNLSEALELTHNCLLND-NELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhccCC-ChHHHHHHHHHHHHHhccC-CcCchhhHHHHHHHHHHhcchhhhhh
Confidence 345667778899889999999999999954311 1234566555556666666 667788999999999999876 45
Q ss_pred cccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHH----HHhc-----CcchhhH
Q 000196 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE----ALLD-----GAAVTKR 747 (1874)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~----~l~d-----~~~~~~r 747 (1874)
++|+++++|+.++...++. +.... -.++..+....++++.||..++...+.+ .+++ ..+.++.
T Consensus 541 ~~~hvp~~mq~lL~L~ne~-----End~L---t~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~ 612 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEV-----ENDDL---TNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKA 612 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhc-----chhHH---HHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHH
Confidence 9999999999999998875 22222 3455667777888899988877666655 4452 1122333
Q ss_pred HHHHHHHHH---HHhhcccccccc-ccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCccccc
Q 000196 748 EVAVSTLGQ---VVQSTGYVITPY-NEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVT 823 (1874)
Q Consensus 748 ~~A~~~Lg~---l~~~~~~~i~p~-~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~ 823 (1874)
.+|.+.|.. +..+....-..+ .-.|.+++.+..+|+++- .++-++++..+.-+....|
T Consensus 613 iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i-~dfyeE~~ei~~~~t~~~~----------------- 674 (1010)
T KOG1991|consen 613 IAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDI-TDFYEELLEIVSSLTFLSK----------------- 674 (1010)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhhhhhc-----------------
Confidence 444333333 332222210000 012445555555555442 2344444433322111000
Q ss_pred ccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC--CCCccchh
Q 000196 824 RAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC--VPYLPKVL 901 (1874)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~--~~~l~~il 901 (1874)
.+. -.+ .-+...++..++|+. ..+.+.+.-++-+++..-++.+ .|...+++
T Consensus 675 -----------~Is---p~m------------W~ll~li~e~~~~~~-~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il 727 (1010)
T KOG1991|consen 675 -----------EIS---PIM------------WGLLELILEVFQDDG-IDYFTDMMPALHNYVTYGTPSLLSNPDYLQIL 727 (1010)
T ss_pred -----------ccC---HHH------------HHHHHHHHHHHhhhh-HHHHHHHHHHHhhheeeCchhhhccchHHHHH
Confidence 000 001 234455556565553 2334444444444432212211 24334444
Q ss_pred HHHHHHHhcC---CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcC
Q 000196 902 PDLFHTVRTC---DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSS 951 (1874)
Q Consensus 902 p~ll~~l~~~---~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~ 951 (1874)
-.++..+-++ .++=.+.+++.+..++-.++..+..|+|..+.+.......
T Consensus 728 ~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~ 780 (1010)
T KOG1991|consen 728 LEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTR 780 (1010)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhc
Confidence 4444433332 2233455777777777777777777888888877776665
No 35
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=0.00051 Score=89.18 Aligned_cols=207 Identities=19% Similarity=0.259 Sum_probs=129.9
Q ss_pred HHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH
Q 000196 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR 935 (1874)
Q Consensus 856 ~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~ 935 (1874)
..+.+.|...+++-+ +......+.++-.|++.++.....++++.+|.++-..+..+...|...|..|-.+.. |.
T Consensus 696 ~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~ 769 (1176)
T KOG1248|consen 696 DDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA-----IQ 769 (1176)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH-----HH
Confidence 345566666554433 223456788888999988866667888888888777766666677777665433322 22
Q ss_pred HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHH---HHH
Q 000196 936 KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVL---DIL 1012 (1874)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~---~il 1012 (1874)
.+++.. +. . ....+.+|++.|.+- +-. +. .+..+. .+-
T Consensus 770 ~~~d~g-----------~e----------~-----------~~~~lnefl~~Isag----l~g-d~--~~~~as~Ivai~ 810 (1176)
T KOG1248|consen 770 SSLDDG-----------NE----------P-----------ASAILNEFLSIISAG----LVG-DS--TRVVASDIVAIT 810 (1176)
T ss_pred hhhccc-----------cc----------c-----------hHHHHHHHHHHHHhh----hcc-cH--HHHHHHHHHHHH
Confidence 222110 00 0 011123333333332 111 11 112222 222
Q ss_pred HHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc---cccchhHhHHHHHHHHhCCCCHHHHHHH
Q 000196 1013 HTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV---QVTGHISSLVHHLKLVLDGKNDELRKDA 1088 (1874)
Q Consensus 1013 ~~l~~~g~~~-~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~---~~~~~~~~ii~~l~~~l~~~~~~l~~~a 1088 (1874)
+.+..++..+ +++++.++..++-++..+ ..+++++|+..+..++... .+.+|.+.+++.+.+.+.+....+|..+
T Consensus 811 ~il~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kv 889 (1176)
T KOG1248|consen 811 HILQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKV 889 (1176)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2333455555 367778888888777654 7899999999999998873 4788999999999998887778899999
Q ss_pred HHHHHHHHHHhcccc-ccchh
Q 000196 1089 VDALCCLAHALGEDF-TIFIP 1108 (1874)
Q Consensus 1089 l~~L~~l~~~~g~~f-~~~ip 1108 (1874)
-..|-.|+...|.+. ..|.|
T Consensus 890 r~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 890 RLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHhCHHHHHhhCH
Confidence 999999999988653 35666
No 36
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=0.00059 Score=88.63 Aligned_cols=775 Identities=14% Similarity=0.114 Sum_probs=370.7
Q ss_pred HHHHHHHHHHhhhc--CCChhhhhhHHHHHhHhhccccCcchhH---HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhh
Q 000196 66 FMDQLYDRISGLLE--SNDAAENLGALRAIDELIDVALGENASK---VSKFSNYMRTVFEVKRDREILVLASKVLGHLAR 140 (1874)
Q Consensus 66 ~~~~l~~~i~~l~~--s~~~~~r~~~i~ai~~li~~~~~~~~~~---~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~ 140 (1874)
-+.++.+.+..+++ +.+-..+..++.+++.|+-.+.....+. .+-+...|.-.+ .+-+.+++.|..++..+..
T Consensus 90 kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~--h~~pkvRk~a~~~i~~VL~ 167 (1176)
T KOG1248|consen 90 KFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA--HKKPKVRKAAQRGIAAVLK 167 (1176)
T ss_pred HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHc
Confidence 34444555555554 6666677778888888876542222221 111222222222 3458889999988887776
Q ss_pred hCCCcc-hHH--HHHHHHHHHhhhcCCCcchhHHH---HHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHH
Q 000196 141 AGGAMT-ADE--VEFQVKMALDWLRGDRVEYRRFA---AVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1874)
Q Consensus 141 ~~g~~~-~~~--v~~~~~~~~~~l~~~~~~~~r~a---A~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA 214 (1874)
.+...+ +++ .-+..+.++..+.+.-.+..-.. .+.+|+.+....| .+.+..+-+.++..+...+..|+-.+
T Consensus 168 ~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p---~~li~sl~e~lL~i~~~s~v~v~~~~ 244 (1176)
T KOG1248|consen 168 GPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFP---RPLIKSLCEVLLNITTESPVLVLLEV 244 (1176)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHhhcccchHHHHHHH
Confidence 432111 111 01122223333321111112222 3334444444444 35667788888899999999998888
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHH----HcchhhhHHHHHHHHHHHHHHh
Q 000196 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELL----RNTGEFMMSRYREVAEIVLRYL 290 (1874)
Q Consensus 215 ~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll----~~~~~~~~~~~~~i~~~ll~~~ 290 (1874)
..++..++. .+.+..-......++..+...--+.+|....-+=+.+++..- ...++........+....+.+.
T Consensus 245 ~q~l~~lf~---~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~ 321 (1176)
T KOG1248|consen 245 LQCLHSLFK---KHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL 321 (1176)
T ss_pred HHHHHHHHh---cCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH
Confidence 888876654 233333344556666666553323222221222222222221 1223334444555555555666
Q ss_pred hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC---cchHHHHHHHHHhhchhhhhhhhHHHHHHH
Q 000196 291 EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE---RDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1874)
Q Consensus 291 ~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~---R~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1874)
.+..+.+-+++.+.+..+-..+.. +.+.+-...+..+.+.+- -..+++.+..+-+.+|+...||+-..++.|
T Consensus 322 ~s~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l 396 (1176)
T KOG1248|consen 322 ESLIEELVQAASQSLKEILKESVT-----VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELTKTLEGL 396 (1176)
T ss_pred hcccHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Confidence 677777666766666665543332 111111111112212221 235788888888888887678887777666
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHH---------HHH-----HHHHHHHhCCCChH
Q 000196 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTT---------LVD-----ALEQITVSIPSLLP 433 (1874)
Q Consensus 368 ~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~---------l~~-----~l~~i~~~~p~l~~ 433 (1874)
..-=...+.....+.=+|+|.-..++||.. +-.++|.=+..+ +.. +++ .|.-+.++|-++..
T Consensus 397 ~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~---vL~~lpLnl~~~-s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~ 472 (1176)
T KOG1248|consen 397 CDLRASPDFFHKLQLDQCIGSAVRAMGPER---VLTILPLNLHAE-SLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAM 472 (1176)
T ss_pred HHhhcCCCCccHHHHHHHHHHHHHhhCHHH---HHHHcchhcccc-ccccchhHhHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 532111111112356689999999999841 222233222111 111 111 01111111111111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhc--------ccccCCCcchh---h
Q 000196 434 TIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLA--------RFNFKGHDLLE---F 502 (1874)
Q Consensus 434 ~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~--------~~~f~~~~l~~---~ 502 (1874)
+++-+..+. . +. +. ... -+++|+ .|...+-.+.. .
T Consensus 473 sl~~K~~~l----------~---------------------~~-~~-~~~-~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~ 518 (1176)
T KOG1248|consen 473 SLQLKAKKL----------K---------------------EA-GS-QVS-LYDTLVDQLWSLLPGFCNYPVDLAESFTD 518 (1176)
T ss_pred HHHHHHHhh----------h---------------------hc-cC-cHH-HHHHHHHHHHHhChhhhCCCccHHHHHHH
Confidence 111111000 0 00 00 000 111111 11000000000 0
Q ss_pred HHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 000196 503 ARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIF 582 (1874)
Q Consensus 503 v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l 582 (1874)
+..++...+. ..++.|..-..++.. |++....-.+..=+.+++
T Consensus 519 la~~l~~al~-~~~elr~~Ic~sL~~------------------------------------Lv~~n~~~~~a~e~~e~~ 561 (1176)
T KOG1248|consen 519 LAPILGAALL-KRPELRETICNSLRM------------------------------------LVEQNKPSSDAAENKEVL 561 (1176)
T ss_pred HHHHHHHHHh-cchHhHHHHHHHHHH------------------------------------HHHcCCCcchHHHHHHHH
Confidence 0000000000 011222111111111 111100001111111222
Q ss_pred HhccCCCCcchhhccHhhHHHHHHHhCC------CCHHHHHHHHHHHH-hhhcCCcCccchHHHHHHHHHHHHHhhCCCC
Q 000196 583 SSLYGNRGFDDFLAQADCLSAIFAALND------EDFDVREYAISVAG-RLSEKNPAYVLPALRRHLIQLLTYLEQSSAD 655 (1874)
Q Consensus 583 ~~l~~~~~f~~~L~~~~~l~~L~~~l~D------~~~~VR~~a~~~l~-~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~ 655 (1874)
.... ..+++.+|..-.. .....|...+.++. ...+..|..+.-.|..-+.+...... +
T Consensus 562 s~~A-----------knfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~----~ 626 (1176)
T KOG1248|consen 562 SNDA-----------KNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLD----E 626 (1176)
T ss_pred hhhh-----------hHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccch----h
Confidence 2111 1345555543321 23456666666665 56666666554444433332222111 1
Q ss_pred hHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHh--cccchhhcHHhHHHH
Q 000196 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV--GGFGMRQYISELMPL 733 (1874)
Q Consensus 656 ~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~--~g~~~~~~~~~llp~ 733 (1874)
.......+.+|..++...+-.-..++..+. .+.+..... .++.+..-+...|+++... +......+++.+...
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~----~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~ 701 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENS----SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNS 701 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhcc----ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 111123344444444333222222233333 333333322 3667777777788887776 223567788888888
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhc
Q 000196 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQ 813 (1874)
Q Consensus 734 l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~ 813 (1874)
+.+.+++. +...|..++.+|..+.+.++....- -.|.+++-++=.+ ++.+...|+.++.||-.+|++..+..
T Consensus 702 L~ds~qs~-~~~~~~~rl~~L~~L~~~~~~e~~~--~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d---- 773 (1176)
T KOG1248|consen 702 LLDSFQSS-SSPAQASRLKCLKRLLKLLSAEHCD--LIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLD---- 773 (1176)
T ss_pred HHHHHhcc-chHHHHHHHHHHHHHHHhccHHHHH--HHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhc----
Confidence 88888876 4557778899999998888722111 1234444444334 45578899999999988886322210
Q ss_pred ccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHH-HHHHHHHHHHhCCC
Q 000196 814 QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKV-VGSLMFIFKSMGLG 892 (1874)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v-~~al~~i~~~~~~~ 892 (1874)
+.+.+ . ....++|. .++...+ ..|. .++.+. +-|+..|+...+..
T Consensus 774 --------------~g~e~--~-----------~~~lnefl-~~Isagl---~gd~---~~~~as~Ivai~~il~e~~~~ 819 (1176)
T KOG1248|consen 774 --------------DGNEP--A-----------SAILNEFL-SIISAGL---VGDS---TRVVASDIVAITHILQEFKNI 819 (1176)
T ss_pred --------------ccccc--h-----------HHHHHHHH-HHHHhhh---cccH---HHHHHHHHHHHHHHHHHHhcc
Confidence 00000 0 00111222 2222221 1222 233233 56677777765544
Q ss_pred C-CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHH
Q 000196 893 C-VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLV 970 (1874)
Q Consensus 893 ~-~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i 970 (1874)
. .+++++++..+-..+....+.++..+...+..++... ..++.+|+|++++.+........ +. ....+..++
T Consensus 820 ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-----~~-~r~Kvr~Ll 893 (1176)
T KOG1248|consen 820 LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-----IK-VRKKVRLLL 893 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-----HH-HHHHHHHHH
Confidence 3 4788888888888888888888888888888888766 46778999999999988433222 01 122566677
Q ss_pred HHHHHHhh-hhhhccchhhHHHHHHhc
Q 000196 971 QQLCLALN-DEFRTHLPVILPCCIQVL 996 (1874)
Q Consensus 971 ~~l~~~l~-~~f~~yl~~llp~ll~~l 996 (1874)
+.++...| +++.+|+|...-.++.-+
T Consensus 894 ekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 894 EKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred HHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 77777666 446677775555444444
No 37
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=0.00046 Score=88.40 Aligned_cols=202 Identities=17% Similarity=0.173 Sum_probs=117.7
Q ss_pred hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000196 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1874)
Q Consensus 190 ~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1874)
.++..+++.++.+++|.+..||+.|+..++.... |.+ ......++..+++-+.-.++....|||+++|++|..
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~----rlp---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTS----RLP---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHc----cCc---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 5677888999999999999999999998886543 433 222334444444422222234678999999999976
Q ss_pred cchhhhHHHHHHHHHHHHHHh--------hcchhHHHHHHHHHhHhHhh-hChhhHHHHHHHHHHHHHHHhhcCC---CC
Q 000196 270 NTGEFMMSRYREVAEIVLRYL--------EHRDRLVRLSITSLLPRIAH-FLRDRFVTNYLKICMNHILTVLRIP---AE 337 (1874)
Q Consensus 270 ~~~~~~~~~~~~i~~~ll~~~--------~~~~~~vr~~~~~~i~~la~-~~~~~f~~~yl~~~~~~Ll~~L~~~---~~ 337 (1874)
- |=.+...++++++.++..+ -.....||.++|-++-+++. |.+.+ .++|+..+...|+..--.+ +-
T Consensus 410 r-GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~-l~p~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 410 R-GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD-LKPVLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred c-CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh-hhHHHHHHHHHHHHHHhcCchhhH
Confidence 3 2233345666666665443 12357799998877776665 55544 4557887887776543222 24
Q ss_pred cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000196 338 RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1874)
Q Consensus 338 R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~ 410 (1874)
|.+|..|+-+....-|. .|+--+++..+- ...- ..--.|+..++..+. .|..|...+++.++.
T Consensus 488 RRAAsAAlqE~VGR~~n--~p~Gi~Lis~~d-y~sV------~~rsNcy~~l~~~ia-~~~~y~~~~f~~L~t 550 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGN--FPHGISLISTID-YFSV------TNRSNCYLDLCVSIA-EFSGYREPVFNHLLT 550 (1133)
T ss_pred hHHHHHHHHHHhccCCC--CCCchhhhhhcc-hhhh------hhhhhHHHHHhHHHH-hhhhHHHHHHHHHHh
Confidence 66777776664433332 244333332211 1100 011235665555442 344566666666553
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=98.97 E-value=1.3e-05 Score=104.46 Aligned_cols=472 Identities=12% Similarity=0.037 Sum_probs=257.4
Q ss_pred HHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHH
Q 000196 155 KMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRV 234 (1874)
Q Consensus 155 ~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~ 234 (1874)
..+-+-|.+.....+|.+--.++..+..| . -+..+++.++..+..++..+|+-..-.+..+.. ..+
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G--~----DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~--------~~p 100 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMG--R----DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR--------LQP 100 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCC--C----CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--------cCh
Confidence 33334444444444555555577766666 2 344677777788888999999988877665432 223
Q ss_pred HHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh
Q 000196 235 QWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD 314 (1874)
Q Consensus 235 ~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~ 314 (1874)
+..-...+.+.+-+.+++ ..+|--|+..++.+- . ....+.+...+.+.+.++++.||++++-++..+-..+++
T Consensus 101 elalLaINtl~KDl~d~N-p~IRaLALRtLs~Ir---~---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 101 EKALLAVNTFLQDTTNSS-PVVRALAVRTMMCIR---V---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC---c---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 334455667777777765 455555544444321 1 122333555666777899999999999999998777775
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 315 RFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
.+.+ ....+.|...|.+.+ ....|+.++-++...-+..+. ...
T Consensus 174 lv~~---~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~------------------------------- 218 (746)
T PTZ00429 174 LFYQ---QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSN------------------------------- 218 (746)
T ss_pred cccc---cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHH-------------------------------
Confidence 4321 123334444454322 345566666555433322110 001
Q ss_pred hCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCcc
Q 000196 393 MGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQ 472 (1874)
Q Consensus 393 ~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (1874)
+++..++..+-++ .+..+-.+++.+.. +. |
T Consensus 219 ------~~~~~Ll~~L~e~--------------------~EW~Qi~IL~lL~~------y~---P--------------- 248 (746)
T PTZ00429 219 ------EWVNRLVYHLPEC--------------------NEWGQLYILELLAA------QR---P--------------- 248 (746)
T ss_pred ------HHHHHHHHHhhcC--------------------ChHHHHHHHHHHHh------cC---C---------------
Confidence 1111111111000 00111112222210 10 0
Q ss_pred ccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCccccccccccccccc
Q 000196 473 VSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGG 552 (1874)
Q Consensus 473 ~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 552 (1874)
+ +++ .+. .+.+.+.+.+.|.++.|.-+|++++..+..... ..
T Consensus 249 -~---~~~---e~~---------------~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~----------------~~ 290 (746)
T PTZ00429 249 -S---DKE---SAE---------------TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCS----------------QE 290 (746)
T ss_pred -C---CcH---HHH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC----------------HH
Confidence 0 000 011 122334566777788888777777666542100 00
Q ss_pred chhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcC
Q 000196 553 KRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA 632 (1874)
Q Consensus 553 ~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1874)
...+.+..+...|+.. ...++++|..++..+..-..-.+.+-++ .++..|...+|+.+ ||...+++|-.++...
T Consensus 291 ~~~~~~~rl~~pLv~L--~ss~~eiqyvaLr~I~~i~~~~P~lf~~-~~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~-- 364 (746)
T PTZ00429 291 LIERCTVRVNTALLTL--SRRDAETQYIVCKNIHALLVIFPNLLRT-NLDSFYVRYSDPPF-VKLEKLRLLLKLVTPS-- 364 (746)
T ss_pred HHHHHHHHHHHHHHHh--hCCCccHHHHHHHHHHHHHHHCHHHHHH-HHHhhhcccCCcHH-HHHHHHHHHHHHcCcc--
Confidence 0112222222333332 4567788888887763100001222122 36666677788876 8999999999988644
Q ss_pred ccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHH
Q 000196 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1874)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1874)
.+ ..++.++..... + .+...+..+.+.+|.++...+. ..+.++..|+..+.+. ..+...++..+
T Consensus 365 Nv----~~IL~EL~eYa~-d-~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll~~~------~~~v~e~i~vi 428 (746)
T PTZ00429 365 VA----PEILKELAEYAS-G-VDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIVDRR------PELLPQVVTAA 428 (746)
T ss_pred cH----HHHHHHHHHHhh-c-CCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHhcCC------chhHHHHHHHH
Confidence 22 223333333222 2 4567788999999999987754 3556677777777643 22344566777
Q ss_pred HHHHHhcccchhhcHHhHHHHHHHHH--hcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHH
Q 000196 713 GDLARVGGFGMRQYISELMPLIVEAL--LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWST 790 (1874)
Q Consensus 713 ~~La~~~g~~~~~~~~~llp~l~~~l--~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~v 790 (1874)
..+.+..++.. +++.++..+ .+-.+.+.|.+.+|.+|..+..... .|.++..+++-+..+ +..|
T Consensus 429 k~IlrkyP~~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-------a~~~L~~~i~~f~~E-~~~V 494 (746)
T PTZ00429 429 KDIVRKYPELL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-------GKDIIQRFIDTIMEH-EQRV 494 (746)
T ss_pred HHHHHHCccHH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-------HHHHHHHHHhhhccC-CHHH
Confidence 77777655431 345555433 2234567888889999998765432 356776666655444 6789
Q ss_pred HHHHHHHHHHhcccCc
Q 000196 791 RREVLKVLGIMGALDP 806 (1874)
Q Consensus 791 r~~al~~lg~lgaldp 806 (1874)
|.+.+.+...+-...|
T Consensus 495 qlqlLta~vKlfl~~p 510 (746)
T PTZ00429 495 QLAILSAAVKMFLRDP 510 (746)
T ss_pred HHHHHHHHHHHHhcCc
Confidence 9888877776654333
No 39
>PRK09687 putative lyase; Provisional
Probab=98.92 E-value=2.2e-07 Score=108.12 Aligned_cols=241 Identities=14% Similarity=0.150 Sum_probs=167.7
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
.+.|++..||..++.+|.. + ..++.+..+..+++|+++.+|..++.+||.+...... ..+.+ ..|..
T Consensus 31 ~L~d~d~~vR~~A~~aL~~---~----~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~-~~L~~ 97 (280)
T PRK09687 31 LLDDHNSLKRISSIRVLQL---R----GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVF-NILNN 97 (280)
T ss_pred HHhCCCHHHHHHHHHHHHh---c----CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHH-HHHHH
Confidence 3589999999999999952 1 1245677788888999999999999999998753211 11222 22222
Q ss_pred -HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH
Q 000196 649 -LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1874)
Q Consensus 649 -l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1874)
+..+ .++.+|..|+..||.+..... .+....+..+...+.+. ++.|+..++.++|.+..
T Consensus 98 l~~~D-~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~-----~~~VR~~a~~aLg~~~~---------- 157 (280)
T PRK09687 98 LALED-KSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDK-----STNVRFAVAFALSVIND---------- 157 (280)
T ss_pred HHhcC-CCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCC-----CHHHHHHHHHHHhccCC----------
Confidence 2345 678999999999999853221 12345566666777764 78899888888865421
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCcc
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPH 807 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~ 807 (1874)
+..++.++..+.|. +..+|..|+.+||.+. . ..|...+.|+..|.++ ++.||.+|+..||.+|.
T Consensus 158 ~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~----~------~~~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~---- 221 (280)
T PRK09687 158 EAAIPLLINLLKDP-NGDVRNWAAFALNSNK----Y------DNPDIREAFVAMLQDK-NEEIRIEAIIGLALRKD---- 221 (280)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHhcCC----C------CCHHHHHHHHHHhcCC-ChHHHHHHHHHHHccCC----
Confidence 45788999999987 5789999999999861 1 1357888888888654 78999999999988651
Q ss_pred chhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHH
Q 000196 808 AHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFK 887 (1874)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~ 887 (1874)
..+++.|++.|+++.. ...++.|+ .
T Consensus 222 ------------------------------------------------~~av~~Li~~L~~~~~---~~~a~~AL----g 246 (280)
T PRK09687 222 ------------------------------------------------KRVLSVLIKELKKGTV---GDLIIEAA----G 246 (280)
T ss_pred ------------------------------------------------hhHHHHHHHHHcCCch---HHHHHHHH----H
Confidence 2356778888888753 22344333 3
Q ss_pred HhCCCCCCCccchhHHHHHHHh-cCCcchhHHH
Q 000196 888 SMGLGCVPYLPKVLPDLFHTVR-TCDDYLKDYI 919 (1874)
Q Consensus 888 ~~~~~~~~~l~~ilp~ll~~l~-~~~~~~~~~~ 919 (1874)
.+|. ++.+|.+...+. +.++.++..+
T Consensus 247 ~ig~------~~a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 247 ELGD------KTLLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred hcCC------HhHHHHHHHHHhhCCChhHHHHH
Confidence 4454 378888888886 4444444443
No 40
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=0.00068 Score=86.97 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCC-CCcchh
Q 000196 516 KATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGN-RGFDDF 594 (1874)
Q Consensus 516 ~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~f~~~ 594 (1874)
..||.+|.-.|+.+...- + . ....+++..+...|+.+++.|++..+|+++..+|.+. .++..
T Consensus 442 ~~VRDaAcY~~WAf~Ray-s--------------~-~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n- 504 (1133)
T KOG1943|consen 442 QHVRDAACYVCWAFARAY-S--------------P-SDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGN- 504 (1133)
T ss_pred cchHHHHHHHHHHHHhcC-C--------------h-hhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCC-
Confidence 479999998888876421 1 0 1134567778888999999999999999998888420 11111
Q ss_pred hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
-|.=++. ....++-+-..|..+..-+++-...+|.+..|.++..+..- +.+. +...|+.+++.|..+....+
T Consensus 505 --~p~Gi~L-is~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~K---v~HW--d~~irelaa~aL~~Ls~~~p 576 (1133)
T KOG1943|consen 505 --FPHGISL-ISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKK---VCHW--DVKIRELAAYALHKLSLTEP 576 (1133)
T ss_pred --CCCchhh-hhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcc---cccc--cHHHHHHHHHHHHHHHHhhH
Confidence 0111111 11223333345666677777777777766666655533222 3444 56778888888888877776
Q ss_pred cccc-cchHHHHH
Q 000196 675 RLIR-PYIAPIHK 686 (1874)
Q Consensus 675 ~~~~-py~~~il~ 686 (1874)
+.+. -|++++++
T Consensus 577 k~~a~~~L~~lld 589 (1133)
T KOG1943|consen 577 KYLADYVLPPLLD 589 (1133)
T ss_pred Hhhcccchhhhhh
Confidence 6655 33444444
No 41
>PRK09687 putative lyase; Provisional
Probab=98.89 E-value=2.7e-07 Score=107.41 Aligned_cols=239 Identities=15% Similarity=0.102 Sum_probs=145.3
Q ss_pred HHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHH
Q 000196 482 VQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1874)
Q Consensus 482 ~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1874)
...|+..|+.+. + +-+...+..++.++++.+|..|+.+++.+-.... ....+
T Consensus 40 R~~A~~aL~~~~--~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~----------------------~~~~a 91 (280)
T PRK09687 40 RISSIRVLQLRG--G----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR----------------------CQDNV 91 (280)
T ss_pred HHHHHHHHHhcC--c----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------------------chHHH
Confidence 345666666552 1 1233344456677788888888888777632110 01233
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHH
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1874)
++.|......|+++.||..++.+|+.... ......+..+..+..++.|++..||..++..||.+.. +. .
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~-~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~~--------a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCK-KNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--EA--------A 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcccc-cccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--HH--------H
Confidence 44444445678888888888888863110 0001123456666677788888888888888876542 11 1
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhccc
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1874)
+..++..+. + +++..|..|+..||.+-.. -+.+.+.|+..+.|. +..|+..++.+||.+..
T Consensus 161 i~~L~~~L~-d-~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~-----~~~VR~~A~~aLg~~~~---- 221 (280)
T PRK09687 161 IPLLINLLK-D-PNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDK-----NEEIRIEAIIGLALRKD---- 221 (280)
T ss_pred HHHHHHHhc-C-CCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCC-----ChHHHHHHHHHHHccCC----
Confidence 222222232 3 4667888888888877111 235566677777664 77788888877776422
Q ss_pred chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000196 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1874)
Q Consensus 722 ~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg 799 (1874)
+..+|.+++.|.+.. .|..|+.+||.+- . |..++.|.++++...+..+++.++..+.
T Consensus 222 ------~~av~~Li~~L~~~~---~~~~a~~ALg~ig----~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 ------KRVLSVLIKELKKGT---VGDLIIEAAGELG----D--------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ------hhHHHHHHHHHcCCc---hHHHHHHHHHhcC----C--------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 367788888887642 5667778888752 1 4677777777764557788877776653
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.9e-07 Score=112.47 Aligned_cols=360 Identities=15% Similarity=0.121 Sum_probs=227.9
Q ss_pred CcHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhc
Q 000196 21 GSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDELID 98 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~li~ 98 (1874)
......+..++.+.|.....+ .|...+++.... +..+.--......+++++.+++. ..++..+.-|.-|+-.+..
T Consensus 63 ~~~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~---~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs 139 (514)
T KOG0166|consen 63 SQASNLELMLAALYSDDPQQQLTATQAFRKLLSK---ERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIAS 139 (514)
T ss_pred HHhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHcc---CCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhc
Confidence 333447778888877654333 366666666532 22221111111245666667665 5567789999999999977
Q ss_pred cccCcchhHH-HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH--HHHHHHHhhhcCCCcchhHHHHHH
Q 000196 99 VALGENASKV-SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE--FQVKMALDWLRGDRVEYRRFAAVL 175 (1874)
Q Consensus 99 ~~~~~~~~~~-~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~--~~~~~~~~~l~~~~~~~~r~aA~~ 175 (1874)
+......-.+ ....+.+..++. +.+.+|++.|.|+||.+|..+... .++|- ..++.++..+.....-.-.+-+.+
T Consensus 140 gtse~T~~vv~agavp~fi~Ll~-s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW 217 (514)
T KOG0166|consen 140 GTSEQTKVVVDAGAVPIFIQLLS-SPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSDKLSMLRNATW 217 (514)
T ss_pred CchhhccccccCCchHHHHHHhc-CCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhccccchHHHHHHHH
Confidence 6422111010 012234455554 568999999999999999864322 22222 145555555554333345667789
Q ss_pred HHHHHHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHHHhhccCCC
Q 000196 176 ILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNA 252 (1874)
Q Consensus 176 ~l~~la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~i~~~~~~~l~~~~ 252 (1874)
+|.-++.+. |.-=...+..++|.+...+.+.++.|...|++|++.+.+. +....+. -..+++.+...|..++
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-----~ne~iq~vi~~gvv~~LV~lL~~~~ 292 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-----SNEKIQMVIDAGVVPRLVDLLGHSS 292 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-----ChHHHHHHHHccchHHHHHHHcCCC
Confidence 999999996 6655568899999999999999999999999999876432 2222222 2356777777776653
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhh-cchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHH
Q 000196 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHIL 329 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~-~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll 329 (1874)
..++-.|+.++|-++.+.++..+--++ ..++.+..++. ++...+|+.+|++|..+++-.+++. +..+ ..++|.|+
T Consensus 293 -~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qi-qaVida~l~p~Li 370 (514)
T KOG0166|consen 293 -PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQI-QAVIDANLIPVLI 370 (514)
T ss_pred -cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHH-HHHHHcccHHHHH
Confidence 355778888888877665543222222 13334444444 6777799999999999998666543 3333 58999999
Q ss_pred HhhcCCC--CcchHHHHHHHHHhhchhhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 330 TVLRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 330 ~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
..|++.+ .|-.|.-+|++++..-..+...|+ ..+++.+...|.-.+.+....++.++..|.+.
T Consensus 371 ~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 371 NLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 9998765 466788899997655444555665 23666666666433333333566777766654
No 43
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.84 E-value=1.8e-07 Score=127.79 Aligned_cols=271 Identities=21% Similarity=0.244 Sum_probs=177.3
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.+..+++|+++.||++|+..++.+-. ..+++.|. .++.|+++.||..++.+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~---------------------------~~~~~~L~-~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP---------------------------PGFGPALV-AALGDGAAAVRRAAAEGL 676 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc---------------------------hhHHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 44577888999999999887776531 11223333 346899999999998888
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
.. +...+ ...+.+...+.|+++.||..|+..|+.+....+ ..+ +..+. + .++..|..|+..
T Consensus 677 ~~---l~~~~---~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~--------~~l---~~~L~-D-~d~~VR~~Av~a 737 (897)
T PRK13800 677 RE---LVEVL---PPAPALRDHLGSPDPVVRAAALDVLRALRAGDA--------ALF---AAALG-D-PDHRVRIEAVRA 737 (897)
T ss_pred HH---HHhcc---CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCH--------HHH---HHHhc-C-CCHHHHHHHHHH
Confidence 51 11101 123456677888899999999999988653221 112 22233 3 578888888888
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
|+.+-. .+.++..+.|+ ++.|+..++.+|+.+....+ ..+|.+...++|. +..
T Consensus 738 L~~~~~-------------~~~l~~~l~D~-----~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~-d~~ 790 (897)
T PRK13800 738 LVSVDD-------------VESVAGAATDE-----NREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDP-DPL 790 (897)
T ss_pred HhcccC-------------cHHHHHHhcCC-----CHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCC-CHH
Confidence 886511 02345556664 78899888888887643211 1256777788876 588
Q ss_pred hHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCccccccc
Q 000196 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRA 825 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~ 825 (1874)
+|..|+.+||.+- . + +.+...+...|+++ ++.||.+|++.||.+|.
T Consensus 791 VR~aA~~aLg~~g----~---~----~~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~---------------------- 836 (897)
T PRK13800 791 VRAAALAALAELG----C---P----PDDVAAATAALRAS-AWQVRQGAARALAGAAA---------------------- 836 (897)
T ss_pred HHHHHHHHHHhcC----C---c----chhHHHHHHHhcCC-ChHHHHHHHHHHHhccc----------------------
Confidence 9999999998752 1 1 23445577777654 78999999999887651
Q ss_pred CCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHH
Q 000196 826 ASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLF 905 (1874)
Q Consensus 826 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll 905 (1874)
...+..|+..|+|++. .++..++.+|..+ +--+...+.+.
T Consensus 837 ------------------------------~~a~~~L~~~L~D~~~-~VR~~A~~aL~~~---------~~~~~a~~~L~ 876 (897)
T PRK13800 837 ------------------------------DVAVPALVEALTDPHL-DVRKAAVLALTRW---------PGDPAARDALT 876 (897)
T ss_pred ------------------------------cchHHHHHHHhcCCCH-HHHHHHHHHHhcc---------CCCHHHHHHHH
Confidence 1123567888888864 3445566555543 11246778888
Q ss_pred HHHhcCCcchhHHHHHHHH
Q 000196 906 HTVRTCDDYLKDYITWKLG 924 (1874)
Q Consensus 906 ~~l~~~~~~~~~~~~~~l~ 924 (1874)
..+.+.++.+|..+...|.
T Consensus 877 ~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 877 TALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHhCCCHHHHHHHHHHHh
Confidence 8888888888888776654
No 44
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=9.3e-07 Score=106.64 Aligned_cols=351 Identities=16% Similarity=0.144 Sum_probs=222.7
Q ss_pred hccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--
Q 000196 510 YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-- 587 (1874)
Q Consensus 510 ~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-- 587 (1874)
.+.+++...+..|..+.++++..... ++...-....+++.+++..-.+..+.++..+--+|+.
T Consensus 74 ~~~S~~~~~q~~a~~~~rkllS~~~~---------------ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIA 138 (514)
T KOG0166|consen 74 ALYSDDPQQQLTATQAFRKLLSKERN---------------PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIA 138 (514)
T ss_pred HHhCCCHHHHHHHHHHHHHHHccCCC---------------CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHh
Confidence 34444555566677778887754321 1112233456778888776667778888876555531
Q ss_pred CCC--cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH------HHHHHHHhhCCCChHhH
Q 000196 588 NRG--FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQSSADNKCR 659 (1874)
Q Consensus 588 ~~~--f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~~~~~~~~r 659 (1874)
... --........++.+..++..++..|++.|+++||.++...|. +|.++ ..++..+..+ ......
T Consensus 139 sgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~-----~Rd~vl~~g~l~pLl~~l~~~-~~~~~l 212 (514)
T KOG0166|consen 139 SGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD-----CRDYVLSCGALDPLLRLLNKS-DKLSML 212 (514)
T ss_pred cCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH-----HHHHHHhhcchHHHHHHhccc-cchHHH
Confidence 000 001122345688888999999999999999999999988754 44443 3344444443 223456
Q ss_pred HHHHHHHHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH-hHHHHHHHH
Q 000196 660 EESAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEA 737 (1874)
Q Consensus 660 ~~a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~llp~l~~~ 737 (1874)
..+.|+|..+++.. |..-..-+.++++.|...+... +..|...++.++..|+....+.+.-.++ .++|.+++.
T Consensus 213 Rn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-----D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~l 287 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-----DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDL 287 (514)
T ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHH
Confidence 78999999999876 3322234667888888888765 7889999999999998765554433333 568889998
Q ss_pred HhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCC
Q 000196 738 LLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSG 817 (1874)
Q Consensus 738 l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~ 817 (1874)
|... +..++..|+.++|.++.+++....- ..-...++.|..++.......+|.+|+++++-|+|=.+...+
T Consensus 288 L~~~-~~~v~~PaLRaiGNIvtG~d~QTq~-vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq------- 358 (514)
T KOG0166|consen 288 LGHS-SPKVVTPALRAIGNIVTGSDEQTQV-VINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ------- 358 (514)
T ss_pred HcCC-CcccccHHHhhccceeeccHHHHHH-HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH-------
Confidence 8765 4567889999999988776553111 112467888889887665667999999999998762221100
Q ss_pred CcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc
Q 000196 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL 897 (1874)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l 897 (1874)
. ....-+++.|+.+|..... ..+..++=||.++...-..+-..||
T Consensus 359 -----------------a-----------------Vida~l~p~Li~~l~~~ef-~~rKEAawaIsN~ts~g~~~qi~yL 403 (514)
T KOG0166|consen 359 -----------------A-----------------VIDANLIPVLINLLQTAEF-DIRKEAAWAISNLTSSGTPEQIKYL 403 (514)
T ss_pred -----------------H-----------------HHHcccHHHHHHHHhccch-HHHHHHHHHHHhhcccCCHHHHHHH
Confidence 0 0112345667777765443 2344566666665544333334454
Q ss_pred --cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 000196 898 --PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV 930 (1874)
Q Consensus 898 --~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~ 930 (1874)
..+++.|...+.-.+......++..+..+....
T Consensus 404 v~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 404 VEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred HHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 347788877773334445555666666655443
No 45
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.0036 Score=80.03 Aligned_cols=375 Identities=17% Similarity=0.177 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHH------hhhChHHHHHHHHHHHHHHHhhhcCCChhhh-hhHHHHH-
Q 000196 23 LDALNRILADLCTHG-NPKEGASLALRKHIEEQA------RDLGGEAFSRFMDQLYDRISGLLESNDAAEN-LGALRAI- 93 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~------~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r-~~~i~ai- 93 (1874)
+.+++.+-.-|.+.. +..=+|-..|+.++.+.= |.--+..+..+++.|.+.+..+++..+...- .+-+...
T Consensus 126 p~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKi 205 (1010)
T KOG1991|consen 126 PGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKI 205 (1010)
T ss_pred hhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 344555544455443 233356666666665431 1111223566677777777778776544221 1111111
Q ss_pred -hHhhc--cccC-cchhHHHHHHHHHHhhccc-------CCChHH---------HHHHHHHHHHHhhhCCCc---ch---
Q 000196 94 -DELID--VALG-ENASKVSKFSNYMRTVFEV-------KRDREI---------LVLASKVLGHLARAGGAM---TA--- 147 (1874)
Q Consensus 94 -~~li~--~~~~-~~~~~~~~~~~~L~~~l~~-------~~d~~v---------~~~aa~~lg~l~~~~g~~---~~--- 147 (1874)
-+++- ++.. -..+....|......++.- .-|+++ -+=|.-.+.|+-.-.|.. ..
T Consensus 206 fks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~ 285 (1010)
T KOG1991|consen 206 FKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYK 285 (1010)
T ss_pred HHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhH
Confidence 23322 2211 1244556677777666652 124443 344555666776654432 11
Q ss_pred HH--------HHHHHHHHHhhhc--CCCcc-hhH--HHHHHHHHHHHhhcC--ccchhchHHHHHH-HHHhh--------
Q 000196 148 DE--------VEFQVKMALDWLR--GDRVE-YRR--FAAVLILKEMAENAS--TVFNVHVAEFVDA-IWVAL-------- 203 (1874)
Q Consensus 148 ~~--------v~~~~~~~~~~l~--~~~~~-~~r--~aA~~~l~~la~~~p--~~~~~~l~~il~~-i~~~l-------- 203 (1874)
+| ++..++..+..+. ..+-| ..| .-++.++......+. +++.||+.-|+.. |+..|
T Consensus 286 ~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~dee 365 (1010)
T KOG1991|consen 286 EFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEE 365 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHH
Confidence 11 2222222222221 11111 112 223333333332222 3678999998855 66655
Q ss_pred ---cCCchhHH-------------HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhcc-------CCCChhHHHHH
Q 000196 204 ---RDPTLAVR-------------ERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLG-------RNAPVHSIHGS 260 (1874)
Q Consensus 204 ---~D~~~~VR-------------~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~-------~~~~~~~~~~a 260 (1874)
.||+.-|| -||...+-.+ .+.|.. +-++++++-+.+-++ .+++.+.+.||
T Consensus 366 lwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~---~~KR~k----e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGA 438 (1010)
T KOG1991|consen 366 LWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTL---VSKRGK----ETLPKILSFIVDILTRYKEASPPNKNPRQKDGA 438 (1010)
T ss_pred HHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHH---HHhcch----hhhhhHHHHHHHHHHhhcccCCCccChhhhhhH
Confidence 36667777 2344333322 233422 223333333332222 22346789999
Q ss_pred HHHHHHHHHcc--hhhhHHHHHH-HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000196 261 LLAVGELLRNT--GEFMMSRYRE-VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1874)
Q Consensus 261 l~~l~~ll~~~--~~~~~~~~~~-i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1874)
+.++|.|.+.- ..-....++. +...|+..++++--..|..+|+.++.++...-.. +.-+...+....++|.+.+
T Consensus 439 L~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~d~~ 516 (1010)
T KOG1991|consen 439 LRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLNDNE 516 (1010)
T ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhccCCc
Confidence 99999998621 1122233333 2345667778888889999999999888532111 1234566666667776433
Q ss_pred --CcchHHHHHHHHHhhchh---hhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000196 337 --ERDSGFIALGEMAGALDG---ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1874)
Q Consensus 337 --~R~~a~~alg~la~~v~~---~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll 409 (1874)
.|..|..||..+..+... .+.|++|++|+.+..-...... ...-.++..++..+++.+.||..++++.|.
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En---d~Lt~vme~iV~~fseElsPfA~eL~q~La 591 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN---DDLTNVMEKIVCKFSEELSPFAVELCQNLA 591 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Confidence 467888888888877653 3889999999888765533222 245678888899999999999988877654
No 46
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=3.1e-05 Score=99.51 Aligned_cols=551 Identities=19% Similarity=0.150 Sum_probs=296.3
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhc----CccchhchHHHH-H
Q 000196 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENA----STVFNVHVAEFV-D 197 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~----p~~~~~~l~~il-~ 197 (1874)
+|...+..+..-+..++...|.... -..+++.+-+.+ .+.. .++..+|++- +..-.|.+..++ +
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~t--r~~lipf~~e~~-~~~d--------ev~~~~a~~~~~~~~~v~~~~~~~~ll~ 162 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERT--RLELIPFLTEAE-DDED--------EVLLDLAEQLGTFLPDVGGPEYAHMLLP 162 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchh--hhhhhhHHHHhc-cchh--------HHHHHHHHHhcccchhccchhHHHHhhH
Confidence 4556666666666666655444332 112333333333 1111 2333444443 333344444444 4
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhH-HHHHHHHHHHHHHcch-hhh
Q 000196 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHS-IHGSLLAVGELLRNTG-EFM 275 (1874)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~-~~~al~~l~~ll~~~~-~~~ 275 (1874)
.+-....+....||+.+.+.+........+. .....+.+ +...+... +|.+ |-.++-+++...-... +.+
T Consensus 163 ~le~l~~~eet~vr~k~ve~l~~v~~~~~~~------~~~~~lv~-l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~v 234 (759)
T KOG0211|consen 163 PLELLATVEETGVREKAVESLLKVAVGLPKE------KLREHLVP-LLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAV 234 (759)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhcChH------HHHHHHHH-HHHHccch-hhhhcchhhhhhhHHhccCCChHHH
Confidence 4555566888889999999888766544321 11122222 22222222 2332 2333334444433222 344
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhch
Q 000196 276 MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALD 353 (1874)
Q Consensus 276 ~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~ 353 (1874)
......++. ..-++..+.||.++..-++.+|...+.+.+. ..+++.+.+.+.... .|.+|+.+++.+.....
T Consensus 235 k~elr~~~~---~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 235 KRELRPIVQ---SLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHH---hhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 443333333 3346889999999999999999887765432 456666666665543 58899999998877765
Q ss_pred hhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHH-HHhcCCCHHHHHHHHHHHHhCCCCh
Q 000196 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDI-MFSAGLSTTLVDALEQITVSIPSLL 432 (1874)
Q Consensus 354 ~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~-ll~~~ls~~l~~~l~~i~~~~p~l~ 432 (1874)
... +....+.+.+.+...+...+...-....+..+...+|+.... ..+.++ +...+..+..... +++...
T Consensus 309 ~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~--~~~~~~~~~l~~~~~~e~r~--a~a~~~---- 379 (759)
T KOG0211|consen 309 DDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATR--TQLVPPVSNLLKDEEWEVRY--AIAKKV---- 379 (759)
T ss_pred Cch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCc--ccchhhHHHHhcchhhhhhH--Hhhcch----
Confidence 532 333344555555554443332223344445566666652111 000000 0001111000000 000000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccC---CCcchhhHHHHHh
Q 000196 433 PTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFK---GHDLLEFARDSVV 508 (1874)
Q Consensus 433 ~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~f~---~~~l~~~v~~~~~ 508 (1874)
.-+...... .+. .....|+++.
T Consensus 380 ---------------------------------------------------~~l~~~l~~~~~~~i~~~~ilp~~~~--- 405 (759)
T KOG0211|consen 380 ---------------------------------------------------QKLACYLNASCYPNIPDSSILPEVQV--- 405 (759)
T ss_pred ---------------------------------------------------HHHhhhcCcccccccchhhhhHHHHH---
Confidence 000000000 000 0111243333
Q ss_pred hhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc--
Q 000196 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY-- 586 (1874)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~-- 586 (1874)
+..+.+..||.+.+..+..+....+ +. +.+...++ ++.....|..+.||...+.-+.
T Consensus 406 -lv~d~~~~vr~a~a~~~~~~~p~~~---------k~----------~ti~~llp-~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 406 -LVLDNALHVRSALASVITGLSPILP---------KE----------RTISELLP-LLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred -HHhcccchHHHHHhccccccCccCC---------cC----------cCccccCh-hhhhhcchhhHHHHHhhHHHHHHH
Confidence 3455678888766644333321111 00 11222222 2222457888889988774221
Q ss_pred -C-CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc-cchHHHHHHHHHHHHHhhCCCChHhHHHHH
Q 000196 587 -G-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1874)
Q Consensus 587 -~-~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1874)
. .........+...++.+.....|....+|.+.++.+..++...+.. +-+.+..++...+. + .....|+.|+
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~----d-~v~~Ir~~aa 539 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLP----D-HVYSIREAAA 539 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhh----h-hHHHHHHHHH
Confidence 1 0111112223446777777777888999999999998888876522 23444443333322 2 3446788999
Q ss_pred HHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcc
Q 000196 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743 (1874)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~ 743 (1874)
..+..++...| -.=+...+++.++....++ +.-++.+.+.++..++.++|..+ +..+++|.+.....|. .
T Consensus 540 ~~l~~l~~~~G--~~w~~~~~i~k~L~~~~q~-----~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~D~-v 609 (759)
T KOG0211|consen 540 RNLPALVETFG--SEWARLEEIPKLLAMDLQD-----NYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVKDP-V 609 (759)
T ss_pred HHhHHHHHHhC--cchhHHHhhHHHHHHhcCc-----ccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhccCC-c
Confidence 99999999888 2233455666666655543 56678888999999999999865 4578999999988887 5
Q ss_pred hhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 744 ~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
.++|-++++.|-.+....... ..--.+.+.+. .|..+++..+|..|...+|.+.
T Consensus 610 anVR~nvak~L~~i~~~L~~~----~~~~~v~pll~-~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 610 ANVRINVAKHLPKILKLLDES----VRDEEVLPLLE-TLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred hhhhhhHHHHHHHHHhhcchH----HHHHHHHHHHH-HhccCcccchhHHHHHHHHHHH
Confidence 789999999999887655331 11123444444 4445667889999988888765
No 47
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.56 E-value=0.009 Score=75.57 Aligned_cols=199 Identities=13% Similarity=0.137 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhh---ccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC
Q 000196 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFL---AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630 (1874)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~f~~~L---~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~ 630 (1874)
.++...++...+.....|.-+-+|.+++.++.. | .+++ -+|.+++.|.+...+.+.+|-...+++|+..++.+
T Consensus 485 ~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~d 561 (1005)
T KOG2274|consen 485 PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLD 561 (1005)
T ss_pred hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccC
Confidence 455666677777777777778899999998852 1 1111 24788999999999999999999999999999999
Q ss_pred cCccchHHHHHHHHHHHH-HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHH
Q 000196 631 PAYVLPALRRHLIQLLTY-LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVL 709 (1874)
Q Consensus 631 p~~v~p~l~~~l~~~l~~-l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~ 709 (1874)
|+.--..-.++....+.. ++++ +++-.-..+-.++-++... ..-..|+....++.+++.+..+... ..+.....++
T Consensus 562 pef~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~-~~~~g~m~e~~iPslisil~~~~~~-~~~~l~~~ai 638 (1005)
T KOG2274|consen 562 PEFAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQI-AANYGPMQERLIPSLISVLQLNADK-APAGLCAIAI 638 (1005)
T ss_pred hhhhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHH-HHhhcchHHHHHHHHHHHHcCcccc-cCchhhHHHH
Confidence 874211111111111111 3455 6675555555555554432 1223467777778888877754211 1233444555
Q ss_pred HHHHHHHHhcccchh-hcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 710 VTVGDLARVGGFGMR-QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 710 ~~l~~La~~~g~~~~-~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
..|..+.+..+..+. ..+...+|.+.++.-...+.+.-.+|-.+|..++.
T Consensus 639 dvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 639 DVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 566666676665543 35567778877776544444444455555554443
No 48
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.50 E-value=0.0039 Score=82.67 Aligned_cols=149 Identities=14% Similarity=0.221 Sum_probs=115.7
Q ss_pred chHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
....+++.++..+..|. +..-+.|--|+.+|..+++-.|..+. -+.+..+|-.-+.|.+..||+||.+-+|.+.-
T Consensus 810 f~~sfD~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~--~~dvq~~Vh~R~~DssasVREAaldLvGrfvl-- 884 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLS--RPDVQEAVHGRLNDSSASVREAALDLVGRFVL-- 884 (1692)
T ss_pred HHHhhHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhc--CHHHHHHHHHhhccchhHHHHHHHHHHhhhhh--
Confidence 34456778888887776 55568899999999999999888653 45667778889999999999999999887642
Q ss_pred hhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 226 ~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
..++.+.++|+.+..++.|+. .-+|..++.++..+.+..++| +.+.++|..+++..++.+..|++.|+.++
T Consensus 885 ------~~~e~~~qyY~~i~erIlDtg-vsVRKRvIKIlrdic~e~pdf--~~i~~~cakmlrRv~DEEg~I~kLv~etf 955 (1692)
T KOG1020|consen 885 ------SIPELIFQYYDQIIERILDTG-VSVRKRVIKILRDICEETPDF--SKIVDMCAKMLRRVNDEEGNIKKLVRETF 955 (1692)
T ss_pred ------ccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHhCCCh--hhHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 223466777888888888874 678999999999998877665 34567888888877777777888887766
Q ss_pred HhH
Q 000196 306 PRI 308 (1874)
Q Consensus 306 ~~l 308 (1874)
-.+
T Consensus 956 ~kl 958 (1692)
T KOG1020|consen 956 LKL 958 (1692)
T ss_pred HHH
Confidence 554
No 49
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.48 E-value=6.3e-06 Score=112.92 Aligned_cols=255 Identities=22% Similarity=0.154 Sum_probs=136.9
Q ss_pred CchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH
Q 000196 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1874)
Q Consensus 478 ~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1874)
+......|+..|+.+.- +-....+...++|+++.||.+|+.++..+................ ........
T Consensus 634 d~~VR~~Av~~L~~~~~------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~----~d~~VR~~ 703 (897)
T PRK13800 634 DPGVRRTAVAVLTETTP------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS----PDPVVRAA 703 (897)
T ss_pred CHHHHHHHHHHHhhhcc------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC----CCHHHHHH
Confidence 33455677777777631 112233446778899999999999988774311100000000000 00000000
Q ss_pred HHHHHH-------HHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC
Q 000196 558 IEELVE-------KLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630 (1874)
Q Consensus 558 ~~~vl~-------~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~ 630 (1874)
.-..+. ..+...+.|+|+.||..++.+|.. ++. .+.|..+++|++++||..+...|+.+....
T Consensus 704 A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~---~~~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 704 ALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS---VDD-------VESVAGAATDENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc---ccC-------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc
Confidence 101110 112224567777777777777752 111 123445677777777777777777765543
Q ss_pred cCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 000196 631 PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710 (1874)
Q Consensus 631 p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~ 710 (1874)
+.. .|. |..+..+ .++..|..|+..|+.+-.. ..+...++..+.++ ++.|+.+++.
T Consensus 774 ~~~-~~~--------L~~ll~D-~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~-----d~~VR~~Aa~ 829 (897)
T PRK13800 774 APA-GDA--------VRALTGD-PDPLVRAAALAALAELGCP---------PDDVAAATAALRAS-----AWQVRQGAAR 829 (897)
T ss_pred chh-HHH--------HHHHhcC-CCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCC-----ChHHHHHHHH
Confidence 211 111 1122233 4567777777776665211 11223355556653 6677777777
Q ss_pred HHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHH
Q 000196 711 TVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWST 790 (1874)
Q Consensus 711 ~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~v 790 (1874)
+|+.+.. ++.++.++..|.|. +..+|..|+.+||.+ .+ -|...+.|...+++ .+..|
T Consensus 830 aL~~l~~----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~---~~--------~~~a~~~L~~al~D-~d~~V 886 (897)
T PRK13800 830 ALAGAAA----------DVAVPALVEALTDP-HLDVRKAAVLALTRW---PG--------DPAARDALTTALTD-SDADV 886 (897)
T ss_pred HHHhccc----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc---CC--------CHHHHHHHHHHHhC-CCHHH
Confidence 7765431 23456777777776 577888888888774 01 13456666666653 36778
Q ss_pred HHHHHHHHH
Q 000196 791 RREVLKVLG 799 (1874)
Q Consensus 791 r~~al~~lg 799 (1874)
|.+|.+.|+
T Consensus 887 r~~A~~aL~ 895 (897)
T PRK13800 887 RAYARRALA 895 (897)
T ss_pred HHHHHHHHh
Confidence 888777764
No 50
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.48 E-value=0.00023 Score=90.90 Aligned_cols=322 Identities=14% Similarity=0.206 Sum_probs=194.4
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-H
Q 000196 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-F 152 (1874)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~ 152 (1874)
++.+++.++.+.-.-+...|+.+++.. .......++.++|...+. ..++.|+..+++.+++++.+.+....-+++ .
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL--SPDSLLPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 667777654444444555566666543 223336778889999997 468999999999999998864322211222 2
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc---chhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV---FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~---~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
.++.++..|. +.+.....+|..+|+.++.+.+.. |.+.+ ++.+...+..++..+|..+.+.+..+...-.
T Consensus 120 l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~--- 192 (503)
T PF10508_consen 120 LLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGLEQLFDSNL---LSKLKSLMSQSSDIVRCRVYELLVEIASHSP--- 192 (503)
T ss_pred HHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhHHHHhCcch---HHHHHHHHhccCHHHHHHHHHHHHHHHhcCH---
Confidence 4555555554 445566788889999999764321 12222 6666777777788899888887766543211
Q ss_pred hhhHHHHH--HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhc--chhHHH----H
Q 000196 230 TRWRVQWY--YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEH--RDRLVR----L 299 (1874)
Q Consensus 230 ~~~~~~~~--~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~--~~~~vr----~ 299 (1874)
..-+.. ..+++.+...+.+ +|.-++..++.++.+|..... +++... .+++.+...+.+ .++..+ -
T Consensus 193 --~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~--gi~~~L~~~l~~~~~dp~~~~~~l~ 267 (503)
T PF10508_consen 193 --EAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQ--GIFDKLSNLLQDSEEDPRLSSLLLP 267 (503)
T ss_pred --HHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhC--CHHHHHHHHHhccccCCcccchhhh
Confidence 111222 2488888888888 457789999999999988321 333321 244444444432 222111 1
Q ss_pred HHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchh-hhh-----hhhHHHHHHHHHhh
Q 000196 300 SITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDG-ELF-----HYLPTITSHLREAI 371 (1874)
Q Consensus 300 ~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~-~~~-----p~l~~i~~~l~~~L 371 (1874)
..+...+.++...+..+...| +.++..+...+... ..+..|++++|.++..+.. .+. +-+..++..+-...
T Consensus 268 g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 268 GRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred hHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 234566667777777776644 78888888777654 3689999999999977744 222 12223334444444
Q ss_pred cCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Q 000196 372 APRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSA 411 (1874)
Q Consensus 372 ~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~ 411 (1874)
.....+.+..+++|++.+...-.+.-...+..+....++.
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~ 386 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYES 386 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 3333333457889999887644332333444555555543
No 51
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=0.014 Score=73.26 Aligned_cols=400 Identities=15% Similarity=0.168 Sum_probs=212.7
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc-----c---
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-----G--- 720 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-----g--- 720 (1874)
++.+ +....|..|+.++..+.++....+.+-+...+..++...... ++.++.-...+++-+..+|..+ |
T Consensus 370 lEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~n--PS~nWk~kd~aiyL~talaik~~t~~~Gvts 446 (960)
T KOG1992|consen 370 LEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKN--PSGNWKKKDRAIYLVTALAIKGQTAKHGVTS 446 (960)
T ss_pred cccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccC--CCccccccchhhhhhHHHHhhcchhhcceee
Confidence 4444 222336678889999998887667776777777666654432 2335555555666666666543 2
Q ss_pred -cchhhcHHhHHHHHHHHHhcC---cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000196 721 -FGMRQYISELMPLIVEALLDG---AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1874)
Q Consensus 721 -~~~~~~~~~llp~l~~~l~d~---~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~ 796 (1874)
..+.+..+-+...+..-|... ..+..|..|++-+-..-.. +.| .+.-.+++.+.+.|+.+ +..|..=|..
T Consensus 447 tn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~q----l~~-~~lm~~~p~li~~L~a~-s~vvhsYAA~ 520 (960)
T KOG1992|consen 447 TNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQ----LGK-EHLMALLPRLIRFLEAE-SRVVHSYAAI 520 (960)
T ss_pred ccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeeccc----CCh-HHHHHHHHHHHHhccCc-chHHHHHHHH
Confidence 123333333333333333321 1233343333322111111 111 12235677777888765 4445544444
Q ss_pred HHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHH
Q 000196 797 VLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQ 876 (1874)
Q Consensus 797 ~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~ 876 (1874)
++-.+-.++ ++ +..+ +. .+..-.-|....+..|.+.++-|.- ...+
T Consensus 521 aiEkil~vr-----------e~----------~~~~---if---------~~~~iap~~~~ll~nLf~a~s~p~~-~Ene 566 (960)
T KOG1992|consen 521 AIEKLLTVR-----------EN----------SNAK---IF---------GAEDIAPFVEILLTNLFKALSLPGK-AENE 566 (960)
T ss_pred HHHhccccc-----------cC----------cccc---cc---------chhhcchHHHHHHHHHHHhccCCcc-cccH
Confidence 433221110 00 0000 00 0000011334556666666654432 3345
Q ss_pred HHHHHHHHHHHHhCCCCCCCccchhHHHHHHHh----c-CCcchhHHHHHHHHHHHHHHHH----hHHHhHHHHHHHHHH
Q 000196 877 KVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVR----T-CDDYLKDYITWKLGTLVSIVRQ----HIRKYLQELFSLISE 947 (1874)
Q Consensus 877 ~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~----~-~~~~~~~~~~~~l~~lv~~~~~----~i~~y~~~i~~~i~~ 947 (1874)
....|++.++........|+.+.+++.+-..+. + ++|..-.++|..+|.++...+. .+..+...+++++..
T Consensus 567 ylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~ 646 (960)
T KOG1992|consen 567 YLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQT 646 (960)
T ss_pred HHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 688999999988877777888888888776543 3 2445667888999999887753 245677777766655
Q ss_pred hhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHH--HhcccccccCchhhHHHHHHHHHHHhcchh--
Q 000196 948 LWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCI--QVLSDAERCNDYTYVLDILHTLEVFGGTLD-- 1023 (1874)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll--~~l~~~~~~~~~~~~~~il~~l~~~g~~~~-- 1023 (1874)
.+...- ...-..++++++.+...-+...-+....++|.++ .++ +++.......+++.++..-|+..-
T Consensus 647 Il~eDI------~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW---~r~gNipalvrLl~aflk~g~~~~~~ 717 (960)
T KOG1992|consen 647 ILSEDI------QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLW---KRSGNIPALVRLLQAFLKTGSQIVEA 717 (960)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHH---hhcCCcHHHHHHHHHHHhcCchhhcc
Confidence 544211 0001145666666655444422222223333333 122 223345556788888877665542
Q ss_pred -hhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc---ccchhHhHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHH
Q 000196 1024 -EHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ---VTGHISSLVHHLKLVLDGKN-DELRKDAVDALCCLAHA 1098 (1874)
Q Consensus 1024 -~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~---~~~~~~~ii~~l~~~l~~~~-~~l~~~al~~L~~l~~~ 1098 (1874)
+.+..|+..+.+++.+-..+ ..+...+..+....+ +.||...|...+.+=+++.. +.-.+..+-.++..+.+
T Consensus 718 ~~~l~~iLGifqkLiaSka~D---h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik 794 (960)
T KOG1992|consen 718 ADKLSGILGIFQKLIASKAND---HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIK 794 (960)
T ss_pred cccchhHHHHHHHHhcCcccc---hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 44556666666666432122 345555555555433 56788888888777776543 55556666667777777
Q ss_pred hcccc
Q 000196 1099 LGEDF 1103 (1874)
Q Consensus 1099 ~g~~f 1103 (1874)
.|..+
T Consensus 795 ~~~~~ 799 (960)
T KOG1992|consen 795 KGGLM 799 (960)
T ss_pred hhhHH
Confidence 77665
No 52
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.42 E-value=0.048 Score=78.74 Aligned_cols=184 Identities=18% Similarity=0.250 Sum_probs=114.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHH
Q 000196 605 FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPI 684 (1874)
Q Consensus 605 ~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~i 684 (1874)
..+..|.++.+|......+. ..+.|....|.+-+.+...+ ++ +....++.+...+|.++...+..+.|++..+
T Consensus 535 ~~aia~~~~~i~~~v~~~l~--~~~~~~laQ~~~lr~~~~al----~~-~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~ 607 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN--ERFDAQLAQPDLLRLLFIAL----HD-ENFAIQELATVIIGRLSSYNPAYVLPSLRKT 607 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc--cchhhhhcCchhHHHHHHHh----hh-hhhhhHHhHHhhccccccccHHHHhHHHHHH
Confidence 34567889999988887776 12222223343333322222 22 3344566777778878777777777777766
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc
Q 000196 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1874)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~ 764 (1874)
...+...+.-. ....+......-+..+.....--+.+|++.++-.++..+++.+ ..+-.+++.++|.+|..+|..
T Consensus 608 ~l~~~s~l~~s----g~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~-s~~~~~~~~~~~eL~~v~g~~ 682 (2341)
T KOG0891|consen 608 LLELLTELEFS----GMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPS-SGVEKAVLETIGELCAVGGEE 682 (2341)
T ss_pred HHHHhchhhhc----chHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccc-hhhHHHHHHHHHHHHHhccch
Confidence 65555554432 1111112112222223232334567888888888888888874 345567899999999999976
Q ss_pred ccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 765 i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+..+.+ +++..+...+.+..+..-|+++++++|.+.
T Consensus 683 ~~~~~~--~~~~~~~~~l~~~s~~~rr~aslk~l~~l~ 718 (2341)
T KOG0891|consen 683 MVKWVD--ELFSLIIKMLQDQSSLGKRLAALKALGQLE 718 (2341)
T ss_pred hhhccc--hHHHHHHHHHHHhhhhhchhHHHHHhhhhh
Confidence 666655 567777776655445677889999998864
No 53
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.34 E-value=0.0018 Score=83.70 Aligned_cols=521 Identities=15% Similarity=0.084 Sum_probs=284.4
Q ss_pred hhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000196 168 YRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~--~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~ 245 (1874)
..|..+...++.++-. -+.. ...++|.+.... |..-.|+.+++.-++.+...+. .+++...+++.+.
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~t----r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~------~~~~~~~ll~~le 165 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVERT----RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG------GPEYAHMLLPPLE 165 (759)
T ss_pred hhhhhhhccccchhhhcccchh----hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc------chhHHHHhhHHHH
Confidence 3455554444444332 2222 345666666777 8888999999988887765433 1223333444444
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH
Q 000196 246 DGLGRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC 324 (1874)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~ 324 (1874)
...... .+.+++.++-.+..++.... +-...++-.+...+- ...-..-|-.++.+++..+-..++.+++. +.
T Consensus 166 ~l~~~e-et~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~---~~d~~~sr~sacglf~~~~~~~~~~~vk~---el 238 (759)
T KOG0211|consen 166 LLATVE-ETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLA---TGDWFQSRLSACGLFGKLYVSLPDDAVKR---EL 238 (759)
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHcc---chhhhhcchhhhhhhHHhccCCChHHHHH---HH
Confidence 433333 46778888887777766332 211222222222111 11111234455666666655555555543 22
Q ss_pred HHHHHHhhcC--CCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHH
Q 000196 325 MNHILTVLRI--PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR 402 (1874)
Q Consensus 325 ~~~Ll~~L~~--~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~ 402 (1874)
-+...+.-+. +..|..+..-+|.+|..++.+.. ...+++...+...+....++..|+.++..+...+..+- +...
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~--~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~ 315 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIV--KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVK 315 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHH--HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhh
Confidence 3333333232 34688899999999999987421 22334444444444444456678888887776655432 3344
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhH
Q 000196 403 GLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPV 482 (1874)
Q Consensus 403 ~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1874)
.+.+.+++..-++.-+. +..+.+...+..
T Consensus 316 ~~~~~l~~~~~d~~~~v------------~~~~~~~~~~L~--------------------------------------- 344 (759)
T KOG0211|consen 316 SLTESLVQAVEDGSWRV------------SYMVADKFSELS--------------------------------------- 344 (759)
T ss_pred hhhHHHHHHhcChhHHH------------HHHHhhhhhhHH---------------------------------------
Confidence 45555443211110000 000111111110
Q ss_pred HHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHH
Q 000196 483 QLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELV 562 (1874)
Q Consensus 483 ~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 562 (1874)
..+|. .-.... ........+.+...++|.+++.-+..+-...... ++.+ ... +.++
T Consensus 345 ----~~~~~-~~~~~~----~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~----------~~~~--i~~---~~il 400 (759)
T KOG0211|consen 345 ----SAVGP-SATRTQ----LVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS----------CYPN--IPD---SSIL 400 (759)
T ss_pred ----HHhcc-ccCccc----chhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc----------cccc--cch---hhhh
Confidence 00111 000000 0112224456667788888776555543211100 0000 011 1112
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHH
Q 000196 563 EKLLIAAVADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1874)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1874)
+ .+...+.|++..||.+........ ..+...-.-...++.....++|+.++||...++.+..+-..++..-...+.+.
T Consensus 401 p-~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~s 479 (759)
T KOG0211|consen 401 P-EVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNS 479 (759)
T ss_pred H-HHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhh
Confidence 2 223456899999998876654311 11100001123466777789999999999999877666665543323334444
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHH-HhhccCCCCCChhHHHHHHHHHHHHHHhcc
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVA-RLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~-~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1874)
++..+.++..+ ..++.|....+.+..++...+ .+++++.+..+.. .+.+ .-..++.++...+-.++...|
T Consensus 480 lLp~i~el~~d-~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d-----~v~~Ir~~aa~~l~~l~~~~G 550 (759)
T KOG0211|consen 480 LLPAIVELAED-LLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPD-----HVYSIREAAARNLPALVETFG 550 (759)
T ss_pred hhhhhhhhccc-hhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhh-----hHHHHHHHHHHHhHHHHHHhC
Confidence 55555566554 457888888888888887665 3444444333333 2333 256788888899999998888
Q ss_pred cchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 721 ~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
. .-+...++|.++....+. +.-.|.+.+.++..++.-.|..+. ...+++.+..+.. +..+.||-.+++.+-.
T Consensus 551 ~--~w~~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~g~ei~----~~~Llp~~~~l~~-D~vanVR~nvak~L~~ 622 (759)
T KOG0211|consen 551 S--EWARLEEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVLGQEIT----CEDLLPVFLDLVK-DPVANVRINVAKHLPK 622 (759)
T ss_pred c--chhHHHhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHhccHHH----HHHHhHHHHHhcc-CCchhhhhhHHHHHHH
Confidence 3 335567888888877654 567899999999999988886532 2367777777654 5578999999988877
Q ss_pred hc
Q 000196 801 MG 802 (1874)
Q Consensus 801 lg 802 (1874)
++
T Consensus 623 i~ 624 (759)
T KOG0211|consen 623 IL 624 (759)
T ss_pred HH
Confidence 65
No 54
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.001 Score=82.23 Aligned_cols=474 Identities=16% Similarity=0.180 Sum_probs=242.1
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHH
Q 000196 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ 153 (1874)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~ 153 (1874)
+..|++|+.-..|.-|+-=|-+++.- |.+. ---|...++++- +++.+|.+..--=|-|-|+--..+.= +-=..
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~--G~dv--S~~Fp~VVKNVa--skn~EVKkLVyvYLlrYAEeqpdLAL-LSInt 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAK--GKDV--SLLFPAVVKNVA--SKNIEVKKLVYVYLLRYAEEQPDLAL-LSINT 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhc--CCcH--HHHHHHHHHHhh--ccCHHHHHHHHHHHHHHhhcCCCcee-eeHHH
Confidence 56788887777787777777777644 3321 123455666664 56899988877777777764222110 00011
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhH
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR 233 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~ 233 (1874)
+++++ .|.+.-.|-.|+.++..|= +....+-++-+|-.+.+|+.+.||..|+.|+-.+-+. +
T Consensus 113 fQk~L----~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL----d---- 174 (968)
T KOG1060|consen 113 FQKAL----KDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL----D---- 174 (968)
T ss_pred HHhhh----cCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC----C----
Confidence 22222 3555556666655544321 1112223334456778999999999999998766432 1
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh
Q 000196 234 VQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313 (1874)
Q Consensus 234 ~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~ 313 (1874)
...+..+.+.+..-|.|.+ .-+.-+|++++.++.-..-+.+.++|+++|..+...-+=+ |-. +|..|-.|+.
T Consensus 175 ~e~k~qL~e~I~~LLaD~s-plVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWg----Qvv---lI~mL~RYAR 246 (968)
T KOG1060|consen 175 PEQKDQLEEVIKKLLADRS-PLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWG----QVV---LINMLTRYAR 246 (968)
T ss_pred hhhHHHHHHHHHHHhcCCC-CcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhh----HHH---HHHHHHHHHH
Confidence 1223344444444455664 5678888888887755444789999999997665322111 112 2222333333
Q ss_pred hhHHHHHH---------------------------HHHHHHHHHhhcCC-CCcch-HHHHHHHHHhhchhhhhh--hhHH
Q 000196 314 DRFVTNYL---------------------------KICMNHILTVLRIP-AERDS-GFIALGEMAGALDGELFH--YLPT 362 (1874)
Q Consensus 314 ~~f~~~yl---------------------------~~~~~~Ll~~L~~~-~~R~~-a~~alg~la~~v~~~~~p--~l~~ 362 (1874)
..|.++.. +.=+..|++..+.- .-|.. ...+...+-- .+.| -...
T Consensus 247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y----~lAP~~~~~~ 322 (968)
T KOG1060|consen 247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFY----HLAPKNQVTK 322 (968)
T ss_pred hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHH----hhCCHHHHHH
Confidence 33322100 11111122211100 01211 1111111100 1111 1223
Q ss_pred HHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHH-----HHHHhCCCChHHHHH
Q 000196 363 ITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALE-----QITVSIPSLLPTIQD 437 (1874)
Q Consensus 363 i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~-----~i~~~~p~l~~~i~~ 437 (1874)
|...+...|. .+..++.-.++++..++.....-|.||+.... -+.-++.....++ .++..- --+.|..
T Consensus 323 i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf----v~ssDp~~vk~lKleiLs~La~es--ni~~ILr 395 (968)
T KOG1060|consen 323 IAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFF----VRSSDPTQVKILKLEILSNLANES--NISEILR 395 (968)
T ss_pred HHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceE----eecCCHHHHHHHHHHHHHHHhhhc--cHHHHHH
Confidence 4444444332 23344456889999999887778899887532 1222333322222 111100 0001111
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChH
Q 000196 438 RLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKA 517 (1874)
Q Consensus 438 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~ 517 (1874)
.+...|. ..|.+-++.|.++||.+.-.-....+....-++.++.+.++.
T Consensus 396 E~q~YI~-------------------------------s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~ 444 (968)
T KOG1060|consen 396 ELQTYIK-------------------------------SSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDEL 444 (968)
T ss_pred HHHHHHh-------------------------------cCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccch
Confidence 1111110 012235577888888873221222333333445667766888
Q ss_pred HHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhcc
Q 000196 518 TRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQ 597 (1874)
Q Consensus 518 VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~ 597 (1874)
|--+|+..+..|+..++.. -.+++.+|....-+=.-+.-|.+++=-+++.....+.+ -
T Consensus 445 Vv~eaV~vIk~Llq~~p~~---------------------h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri-~ 502 (968)
T KOG1060|consen 445 VVAEAVVVIKRLLQKDPAE---------------------HLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRI-A 502 (968)
T ss_pred hHHHHHHHHHHHHhhChHH---------------------HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchh-c
Confidence 8888888888888655421 12233333222101111233444433343211112222 2
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHH
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL 649 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l 649 (1874)
|++++.+...+.|+..+|+-.++.+-.+|--.++.. -+.+.+++.++
T Consensus 503 PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~-----~kll~~Yv~~L 549 (968)
T KOG1060|consen 503 PDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ-----TKLLVQYVFEL 549 (968)
T ss_pred hHHHHHHHHhhccccchhhHHHHHhhhhheEechhh-----HHHHHHHHHHH
Confidence 688999999999999999999999888887777654 34455666555
No 55
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0012 Score=81.60 Aligned_cols=319 Identities=14% Similarity=0.139 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
+..++---+..+++|+.+.||.++-.++....+.++... ++++..+-.+|.|.++-|--+|+-++..++..+-..+-++
T Consensus 140 IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k-~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkn 218 (968)
T KOG1060|consen 140 IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK-DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKN 218 (968)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH-HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHH
Confidence 333433334445677777777777666643333333221 2455556667777777777777776666555443344455
Q ss_pred HHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh-Cccc-----------------------cccc-----hHHHHHHH
Q 000196 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERL-----------------------IRPY-----IAPIHKAL 688 (1874)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~-----------------------~~py-----~~~il~~l 688 (1874)
+|++ .+++..+... + +...+.+|..-+++ .++. =.|| ..-+++..
T Consensus 219 yrkl-C~ll~dvdeW-g----QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~st 292 (968)
T KOG1060|consen 219 YRKL-CRLLPDVDEW-G----QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQST 292 (968)
T ss_pred HHHH-Hhhccchhhh-h----HHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhc
Confidence 5652 3333333222 1 11122222222221 0100 0233 22233333
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccccccc
Q 000196 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPY 768 (1874)
Q Consensus 689 l~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~ 768 (1874)
-+.+... ++.|..+++.+.-.+|... -...+...++..|+. +.+++...+..+..++.....-+.||
T Consensus 293 kpLl~S~-----n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~~~~~lF~P~ 359 (968)
T KOG1060|consen 293 KPLLQSR-----NPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS--NREVQYVVLQNIATISIKRPTLFEPH 359 (968)
T ss_pred cHHHhcC-----CcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc--CCcchhhhHHHHHHHHhcchhhhhhh
Confidence 3344432 5666655555554444321 223445555555553 34566667777777666655555555
Q ss_pred cc----------------------------chHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcc
Q 000196 769 NE----------------------------YPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHG 820 (1874)
Q Consensus 769 ~~----------------------------~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~ 820 (1874)
.+ .++++.-+...+++. +..+.-.++++||.||..-
T Consensus 360 lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~--------------- 423 (968)
T KOG1060|consen 360 LKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRI--------------- 423 (968)
T ss_pred hhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhh---------------
Confidence 21 123333333333333 3356667777777776200
Q ss_pred cccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccch
Q 000196 821 EVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKV 900 (1874)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~i 900 (1874)
. -.++.+++.|+..|+..+- . .++++++.|=+-+... ..-..+|
T Consensus 424 --------------------~-----------sv~~tCL~gLv~Llsshde--~--Vv~eaV~vIk~Llq~~-p~~h~~i 467 (968)
T KOG1060|consen 424 --------------------G-----------SVTDTCLNGLVQLLSSHDE--L--VVAEAVVVIKRLLQKD-PAEHLEI 467 (968)
T ss_pred --------------------C-----------chhhHHHHHHHHHHhcccc--h--hHHHHHHHHHHHHhhC-hHHHHHH
Confidence 0 0236788889888865532 1 3455555543333222 1223346
Q ss_pred hHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCC
Q 000196 901 LPDLFHTVRTC-DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSF 952 (1874)
Q Consensus 901 lp~ll~~l~~~-~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~ 952 (1874)
+-.+...+.+- -|..|..++|.+|..+.+ +-..+|+++..+.+.+...
T Consensus 468 i~~La~lldti~vp~ARA~IiWLige~~e~----vpri~PDVLR~laksFs~E 516 (968)
T KOG1060|consen 468 LFQLARLLDTILVPAARAGIIWLIGEYCEI----VPRIAPDVLRKLAKSFSDE 516 (968)
T ss_pred HHHHHHHhhhhhhhhhhceeeeeehhhhhh----cchhchHHHHHHHHhhccc
Confidence 66665555443 244566777777776654 2345667777776666543
No 56
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.23 E-value=0.00037 Score=89.04 Aligned_cols=310 Identities=14% Similarity=0.150 Sum_probs=188.4
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH
Q 000196 29 ILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKV 108 (1874)
Q Consensus 29 ~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~ 108 (1874)
+|.+|.+.+.+.-. ...+++...+....++.. .+++...+...+++++...|.-++.++..++.-..+ ....+
T Consensus 43 lf~~L~~~~~e~v~---~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~ 115 (503)
T PF10508_consen 43 LFDCLNTSNREQVE---LICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLL 115 (503)
T ss_pred HHHHHhhcChHHHH---HHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHh
Confidence 88888866422221 123444444455566554 445566667788899999999999998888754322 11111
Q ss_pred --HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHH-HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC
Q 000196 109 --SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ-VKMALDWLRGDRVEYRRFAAVLILKEMAENAS 185 (1874)
Q Consensus 109 --~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~-~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p 185 (1874)
......+..++. ..|..|.+.|++++.+|+.+.... ..+++.. +..+...+ ...++..|.-+..++..++..++
T Consensus 116 ~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 116 VDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred cCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCH
Confidence 234566777775 678999999999999999863211 1222222 22222222 23345567778888889998888
Q ss_pred ccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHhhccCC-CChhHHHHHH
Q 000196 186 TVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR--WRVQWYYRMFEATQDGLGRN-APVHSIHGSL 261 (1874)
Q Consensus 186 ~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~--~~~~~~~~i~~~~~~~l~~~-~~~~~~~~al 261 (1874)
..+.-.. ..+++.++..+.+.+..||..|.+.+..+... . .... .+...+++++..+...-.++ ...-..-|.+
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~ 270 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-P-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM 270 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-h-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence 8764333 24999999999999999999999988877651 1 1111 11112333443333332222 1111233444
Q ss_pred HHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh-hHH-H---HHHHHHHHHHHHhhcCCC
Q 000196 262 LAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD-RFV-T---NYLKICMNHILTVLRIPA 336 (1874)
Q Consensus 262 ~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~-~f~-~---~yl~~~~~~Ll~~L~~~~ 336 (1874)
..++.+....+..+...+..+...+....++.++..+..+++++|.++..... .+. . .-++.++..+....++.+
T Consensus 271 ~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 271 KFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 45555555444455567778888888888999999999999999999864332 222 1 122333444444444433
Q ss_pred --CcchHHHHHHHHHh
Q 000196 337 --ERDSGFIALGEMAG 350 (1874)
Q Consensus 337 --~R~~a~~alg~la~ 350 (1874)
-|..++.|++.+..
T Consensus 351 ~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 351 TELKLRALHALASILT 366 (503)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 46778888888753
No 57
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.22 E-value=0.05 Score=69.19 Aligned_cols=141 Identities=13% Similarity=0.121 Sum_probs=93.3
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh---
Q 000196 198 AIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF--- 274 (1874)
Q Consensus 198 ~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~--- 274 (1874)
.++.+..++++.+|.+|...+++... ...+...+.+.+.++.. +...|++|+..|...++..|..
T Consensus 8 ~~L~~~ls~d~~vr~~AE~~l~qle~---------~~~f~~aL~~va~~~~~---sl~lRQ~A~v~L~~yie~hW~~~~E 75 (1005)
T KOG2274|consen 8 ELLSGSLSADQNVRSQAETQLKQLEL---------TEGFGVALAEVAANKDA---SLPLRQIALVLLKRYIEKHWSPNFE 75 (1005)
T ss_pred HHHHhhcCCChhHHHHHHHHHhcccc---------chHHHHHHHHHHhCccc---CchHHHHHHHHHHHHHHHhCCChHh
Confidence 34567789999999999998876421 11233344444443322 2456889998888888854411
Q ss_pred -------hHHHHHH-HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC--cchHHHH
Q 000196 275 -------MMSRYRE-VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIA 344 (1874)
Q Consensus 275 -------~~~~~~~-i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~--R~~a~~a 344 (1874)
....... +-+.++..+.+.+..+|.++..++..+|.++-. .-|+++++.+...+...++ -..|+++
T Consensus 76 ~fr~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~P----d~WpElv~~i~~~l~~~n~n~i~~am~v 151 (1005)
T KOG2274|consen 76 AFRYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYP----DEWPELVPFILKLLSSGNENSIHGAMRV 151 (1005)
T ss_pred hccCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCc----hhhHHHHHHHHHHHhccchhhhhhHHHH
Confidence 1112222 223445555678889999999999999987643 2479999999999986443 3478888
Q ss_pred HHHHHhhchh
Q 000196 345 LGEMAGALDG 354 (1874)
Q Consensus 345 lg~la~~v~~ 354 (1874)
+.++...+-.
T Consensus 152 L~el~~ev~~ 161 (1005)
T KOG2274|consen 152 LAELSDEVDV 161 (1005)
T ss_pred HHHHHHHHHH
Confidence 8888776643
No 58
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.012 Score=73.71 Aligned_cols=404 Identities=17% Similarity=0.161 Sum_probs=203.7
Q ss_pred hhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhhhhhhhHHHHHHH
Q 000196 290 LEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1874)
Q Consensus 290 ~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1874)
++|++..|...|+.+++.++. .+.+ +.+.|.+-..|+.. -.|-+|..|.-.+.+.+++-+.-|++. .
T Consensus 116 L~s~nq~vVglAL~alg~i~s---~Ema----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~----~ 184 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICS---PEMA----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIA----F 184 (866)
T ss_pred ccCCCeeehHHHHHHhhccCC---HHHh----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHH----H
Confidence 467888899999999998863 2333 44555555555543 358899999999888887754444443 3
Q ss_pred HHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHH----------HhCCCChHHHHH
Q 000196 368 REAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQIT----------VSIPSLLPTIQD 437 (1874)
Q Consensus 368 ~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~----------~~~p~l~~~i~~ 437 (1874)
+..|.+++..+-...+..+..+++. +++...|.+.+.+.++ .-|+.+. ..+| .|.+|=
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr~l~~~lV---------~iLk~l~~~~yspeydv~gi~--dPFLQi 252 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKI-SPDALSYFRDLVPSLV---------KILKQLTNSGYSPEYDVHGIS--DPFLQI 252 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHHHHHHHHH---------HHHHHHhcCCCCCccCccCCC--chHHHH
Confidence 4444445444444566666666654 3333344444443332 1222222 1112 244555
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc----ccCCCcchhhHHHHHhhhcc-
Q 000196 438 RLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF----NFKGHDLLEFARDSVVLYLD- 512 (1874)
Q Consensus 438 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~----~f~~~~l~~~v~~~~~~~l~- 512 (1874)
++|..+.. .|+... + ....-.+.|+.. +-+...-...+-+||..-++
T Consensus 253 ~iLrlLri--LGq~d~------------------d--------aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I 304 (866)
T KOG1062|consen 253 RILRLLRI--LGQNDA------------------D--------ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI 304 (866)
T ss_pred HHHHHHHH--hcCCCc------------------c--------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc
Confidence 55555541 222110 0 001112222222 11111112334455544444
Q ss_pred CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcc
Q 000196 513 DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFD 592 (1874)
Q Consensus 513 ~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~ 592 (1874)
.++.+.|..|+..+++++...-.. .+++. +..|+.+...||+..-
T Consensus 305 ~~~~~LrvlainiLgkFL~n~d~N------------------irYva--Ln~L~r~V~~d~~avq--------------- 349 (866)
T KOG1062|consen 305 RSNSGLRVLAINILGKFLLNRDNN------------------IRYVA--LNMLLRVVQQDPTAVQ--------------- 349 (866)
T ss_pred cCCchHHHHHHHHHHHHhcCCccc------------------eeeee--hhhHHhhhcCCcHHHH---------------
Confidence 456788888888888877543211 11111 1122222223332211
Q ss_pred hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh
Q 000196 593 DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN 672 (1874)
Q Consensus 593 ~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~ 672 (1874)
.+=..+..|++|++..+|+.|+++.-.|...+ . ++.++.+++..|..+ +..-+...+.-+..+++.
T Consensus 350 ------rHr~tIleCL~DpD~SIkrralELs~~lvn~~--N----v~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 350 ------RHRSTILECLKDPDVSIKRRALELSYALVNES--N----VRVMVKELLEFLESS--DEDFKADIASKIAELAEK 415 (866)
T ss_pred ------HHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--c----HHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHh
Confidence 12345667888999999999999998887755 2 333333444444443 556778888888899988
Q ss_pred CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHH-HHhcCcchhhHHHHH
Q 000196 673 CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE-ALLDGAAVTKREVAV 751 (1874)
Q Consensus 673 ~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~-~l~d~~~~~~r~~A~ 751 (1874)
..+.=+=|++.++.++... .+- .+.++..+.+.-|+ ...++.-..-+..+.-.+.. .+.+-+....-..|.
T Consensus 416 faP~k~W~idtml~Vl~~a-G~~----V~~dv~~nll~LIa---~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~ 487 (866)
T KOG1062|consen 416 FAPDKRWHIDTMLKVLKTA-GDF----VNDDVVNNLLRLIA---NAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS 487 (866)
T ss_pred cCCcchhHHHHHHHHHHhc-ccc----cchhhHHHHHHHHh---cCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 7665555677766665443 211 13344444433322 22122111111122222221 122222233456899
Q ss_pred HHHHHHHhhc---cccccccc-cchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHh
Q 000196 752 STLGQVVQST---GYVITPYN-EYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIM 801 (1874)
Q Consensus 752 ~~Lg~l~~~~---~~~i~p~~-~~p~ll~~Ll~~l~~~~-~~~vr~~al~~lg~l 801 (1874)
|++|.--... +....|.. .-.+++..+...+.... +..++-=++-++-.+
T Consensus 488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KL 542 (866)
T KOG1062|consen 488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKL 542 (866)
T ss_pred HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 9999643221 11112221 12468888888875443 345554454444443
No 59
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.20 E-value=1.3e-05 Score=76.10 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~ 247 (1874)
+.|.+|+..|.+++.+.+..+.+|++.|++.|+.++.|++.+||..|+++|.++...... ..-.++..+|+.+...
T Consensus 1 n~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~----~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG----EILPYFNEIFDALCKL 76 (97)
T ss_pred CchhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999998876541 2234678899999998
Q ss_pred ccCCCChhHHHHHHHHHHH
Q 000196 248 LGRNAPVHSIHGSLLAVGE 266 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ 266 (1874)
+.|++ ..++.||- .|..
T Consensus 77 ~~D~d-~~Vr~~a~-~Ld~ 93 (97)
T PF12755_consen 77 SADPD-ENVRSAAE-LLDR 93 (97)
T ss_pred HcCCc-hhHHHHHH-HHHH
Confidence 88885 56677763 4433
No 60
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.16 E-value=0.044 Score=77.47 Aligned_cols=499 Identities=15% Similarity=0.111 Sum_probs=255.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-----~~~~~~~~~ 1364 (1874)
.++....+.+.|..|+.+++...... +........+..+|...|+.+.+...+....... ........+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA------PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAY 373 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45667777888889988887665432 2334566778889999999999988876543211 112234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWD 1444 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd 1444 (1874)
-+.|++++|+..|++.....++. ......+..|+...|+++.-.......... ++.. .......+.+..+.|+++
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~-~~~~~~l~~~~~~~~~~~ 448 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELDPEN---AAARTQLGISKLSQGDPSEAIADLETAAQL-DPEL-GRADLLLILSYLRSGQFD 448 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhh-CCcc-hhhHHHHHHHHHhcCCHH
Confidence 88899999999999887643332 345567778888999987555444332211 1111 112234456777889998
Q ss_pred hHHHHHhhcCCCC--cc-hhhccccccccCCCCCchHHHHHHHHHHhcC-hhhhHHHHHHHHHHh-HhhhhHHHHHHhhc
Q 000196 1445 QMAEYVSRLDDGD--ES-KLRGLGNTAANGDGSSNGTFFRAVLLVRRGK-VLESYERAYSNMVRV-QQLSELEEVIDYCT 1519 (1874)
Q Consensus 1445 ~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~-~~esy~ray~~l~~l-q~L~EleEii~~~~ 1519 (1874)
.....+..+.... .. .+..+|...... +.+-+|+....+.. ....+..++..+..+ ....+.++.+++..
T Consensus 449 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 449 KALAAAKKLEKKQPDNASLHNLLGAIYLGK-----GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8777666543211 00 011111111000 01111111111000 000001111111111 11112222222110
Q ss_pred C-CCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 000196 1520 L-PVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQY 1598 (1874)
Q Consensus 1520 ~-~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~ 1598 (1874)
. ...++........+.... ....+.+.-...+ +..+-....+...|+.++....+.|+++.|...+.++...
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLY-----LRTGNEEEAVAWL--EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHH-----HHcCCHHHHHHHH--HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 0 000000000000010110 0112222111111 1111111244678888999999999999999988887654
Q ss_pred CCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHH
Q 000196 1599 DPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKL 1678 (1874)
Q Consensus 1599 ~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~ 1678 (1874)
.+ ..+......+..+...|+ ..+|+..++..+...... ......++.++...
T Consensus 597 ~~----------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 597 AP----------DSPEAWLMLGRAQLAAGD---LNKAVSSFKKLLALQPDS---------------ALALLLLADAYAVM 648 (899)
T ss_pred CC----------CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHc
Confidence 33 235667777788888884 678888888776431100 01112334444444
Q ss_pred hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH---------HHhhhccCCCCc------------
Q 000196 1679 GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV---------MSHYTLRGLPSV------------ 1737 (1874)
Q Consensus 1679 g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~---------~~~~~~~~~~~~------------ 1737 (1874)
|+ .++....|+++.+.+|+...+|..++....+. ++...... +..
T Consensus 649 ~~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 649 KN-------------YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred CC-------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 43 46677888888888888888888777654321 11000000 100
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH-HHHHHHHHhccCCC
Q 000196 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL-VVLPQIIARIHSNN 1816 (1874)
Q Consensus 1738 ~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl-~~ipQLiari~~~~ 1816 (1874)
...-...|++.|-+++... ++. +....+..++...|...+..+.+.+.+..-|.+... ..+-.+..+.+...
T Consensus 715 ~~g~~~~A~~~~~~~~~~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRA-----PSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HCCCHHHHHHHHHHHHhhC-----CCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 0112357888888888764 222 556778888888898888877777777766665422 22223333333322
Q ss_pred hhHHHHHHHHHHHHHhhCchhhH--HHHHHH-hcCCcHHHHHHHHHHHHHHhhccC
Q 000196 1817 RAVRELIQSLLVRIGQSHPQALM--YPLLVA-CKSISNLRRAAAQEVVDKVRQHSG 1869 (1874)
Q Consensus 1817 ~~v~~~l~~ll~~i~~~hPqa~l--y~L~v~-~kS~~~~R~~~a~~Il~~~~~~~~ 1869 (1874)
--..++.++.+.+|.... ..+... .+... ..|...++++-...|
T Consensus 788 -----~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~----~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 788 -----KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD----PRALEYAEKALKLAP 834 (899)
T ss_pred -----HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHHhhCC
Confidence 233445555566665432 222222 22222 226677776655444
No 61
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.10 E-value=0.0017 Score=81.26 Aligned_cols=300 Identities=14% Similarity=0.147 Sum_probs=191.5
Q ss_pred HHHHHHHHHcCCC--Cch--hhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHh-----hh--cCCCh-hhhhhHHHH
Q 000196 25 ALNRILADLCTHG--NPK--EGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISG-----LL--ESNDA-AENLGALRA 92 (1874)
Q Consensus 25 ~~~~~~~~L~s~~--~~~--~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~-----l~--~s~~~-~~r~~~i~a 92 (1874)
++.++++...+.. +.. ......+.+.+....+.++.+.-.+..++++..+.. -+ .++.. .....-+..
T Consensus 91 lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (415)
T PF12460_consen 91 LVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVIL 170 (415)
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHH
Confidence 5556666554332 111 224444677777778899999888877777765440 01 11111 122223333
Q ss_pred HhHh-hccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHH
Q 000196 93 IDEL-IDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRF 171 (1874)
Q Consensus 93 i~~l-i~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~ 171 (1874)
+..+ ..++..-..+....+.+-+..+.-...+...+..++++++.|+..-. ..+.++..++...+-+.+......|.
T Consensus 171 ~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~--~~~~l~~~l~~~~~~~~~~~~~~~~~ 248 (415)
T PF12460_consen 171 FSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP--DDDDLDEFLDSLLQSISSSEDSELRP 248 (415)
T ss_pred HHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC--ChhhHHHHHHHHHhhhcccCCcchhH
Confidence 3344 44442222222333433333333235568889999999999987511 12233344444443332234445677
Q ss_pred HHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh---cch--h----hHHHHHHHHHH
Q 000196 172 AAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK---RET--R----WRVQWYYRMFE 242 (1874)
Q Consensus 172 aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~---r~~--~----~~~~~~~~i~~ 242 (1874)
.++.++..++.+.=---.|.-..+++.++..+.| +.+...|+++++.++..... ++. . ++.+++..++|
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 7777777766653222245666777888888888 67888899999887754222 111 1 34566777888
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000196 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1874)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl 321 (1874)
.+.++..+.+ .+.+..-+.+|.-++.+.+ ..+.++++++++.++..++..+..++.+++.++..+..-.++.+. .|+
T Consensus 327 ~L~~~~~~~~-~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~-~hl 404 (415)
T PF12460_consen 327 KLLEGFKEAD-DEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS-EHL 404 (415)
T ss_pred HHHHHHhhcC-hhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH-HHH
Confidence 8888887764 3478888899999999655 567889999999999999999999999999999999887766554 489
Q ss_pred HHHHHHHHH
Q 000196 322 KICMNHILT 330 (1874)
Q Consensus 322 ~~~~~~Ll~ 330 (1874)
+.+++.|++
T Consensus 405 ~sLI~~LL~ 413 (415)
T PF12460_consen 405 SSLIPRLLK 413 (415)
T ss_pred HHHHHHHHh
Confidence 999998875
No 62
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.09 E-value=0.11 Score=68.21 Aligned_cols=230 Identities=13% Similarity=0.057 Sum_probs=130.1
Q ss_pred hhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhccc-------C--CChHHHHHHHHHHHHHhhhCCCc
Q 000196 76 GLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEV-------K--RDREILVLASKVLGHLARAGGAM 145 (1874)
Q Consensus 76 ~l~~s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~-------~--~d~~v~~~aa~~lg~l~~~~g~~ 145 (1874)
+.+-++.|..|-||..|+-.+....++. ....+....--+..++.. + --..|+...||+||.+.++ .
T Consensus 84 ~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~---~ 160 (1549)
T KOG0392|consen 84 NDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKH---M 160 (1549)
T ss_pred HHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHh---h
Confidence 3455799999999999999998775332 111111111111111110 1 1247899999999999886 2
Q ss_pred chHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
-...+...++.....+.. ..|+.|+++++.+++...---+.+...++.+++.+..+|.|.+..||..|+..+-......
T Consensus 161 ~~s~~~~~~~il~q~~~q-~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 161 DESLIKETLDILLQMLRQ-PNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred hhHhhHHHHHHHHHHHcC-cchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 233333444444333333 3789999999999886553334556888899999999999999999988888877665544
Q ss_pred hhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHH-HHHHHHHcc--hhh-hHHHH-HHHHHHHHHHhhcchhHHHHH
Q 000196 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLL-AVGELLRNT--GEF-MMSRY-REVAEIVLRYLEHRDRLVRLS 300 (1874)
Q Consensus 226 ~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~-~l~~ll~~~--~~~-~~~~~-~~i~~~ll~~~~~~~~~vr~~ 300 (1874)
.....+........+...+..... - .+. .+.+. .+.++.... -++ ..... ..+.+.++..+.|.-..+|.+
T Consensus 240 v~l~~~~i~~lv~~l~~~l~~ldd-l-~~s--~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a 315 (1549)
T KOG0392|consen 240 VKLMVQKIAKLVHTLWSFLLELDD-L-SSS--TASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRA 315 (1549)
T ss_pred HhhhHhHHHHHHHHHHHHHHHhhh-c-chh--hHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH
Confidence 222222222222333333332222 1 111 11111 111211100 000 11111 134556666677777788889
Q ss_pred HHHHhHhHhhhCh
Q 000196 301 ITSLLPRIAHFLR 313 (1874)
Q Consensus 301 ~~~~i~~la~~~~ 313 (1874)
++..+..+.+...
T Consensus 316 ~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 316 ALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHhcCC
Confidence 9888888776543
No 63
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.0076 Score=70.43 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=88.7
Q ss_pred hHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc--cchhhcHHhHHHH
Q 000196 656 NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG--FGMRQYISELMPL 733 (1874)
Q Consensus 656 ~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g--~~~~~~~~~llp~ 733 (1874)
.+.+.+|.+.|+.+........++-...+++.-+..+.+.......-.|+-++++++|.|..+-. -+-.++.+.++|+
T Consensus 498 dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 46788899999998876665666666666666555555433223466788999999999987533 3457889999999
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh
Q 000196 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1874)
Q Consensus 734 l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l 782 (1874)
++..+.+..+..+|..|..+|.......++- .+||-....++.+|
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~----d~~~Lsw~~lv~aL 622 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPGKREQYG----DQYALSWNALVTAL 622 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCCCcccch----hHHhHHHHHHHHHH
Confidence 9999998888889999999998765544432 34555666666655
No 64
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.99 E-value=0.27 Score=69.40 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
...|..++.+..+.|+++.|...+.++....|. ........+.+....|+ ..+|+..++..
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~~ 559 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK----------NLRAILALAGLYLRTGN---EEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 445555555666666666665555555443321 13344444555555553 34555555544
No 65
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.96 E-value=0.00019 Score=92.17 Aligned_cols=220 Identities=14% Similarity=0.153 Sum_probs=147.2
Q ss_pred CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 000196 165 RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1874)
Q Consensus 165 ~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~ 244 (1874)
+....|.+|+.+|..++....+ ..-++.|+|.++..++|+...||-+|.++|-+++..+.+-.+....-+..=++|.+
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 3345688898888888877554 35788999999999999999999999999999998887533222222333466666
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHH-------------cch----------------hhhHHHHHHHHHHHHHHhhcchh
Q 000196 245 QDGLGRNAPVHSIHGSLLAVGELLR-------------NTG----------------EFMMSRYREVAEIVLRYLEHRDR 295 (1874)
Q Consensus 245 ~~~l~~~~~~~~~~~al~~l~~ll~-------------~~~----------------~~~~~~~~~i~~~ll~~~~~~~~ 295 (1874)
..-+.+++..-+|-+-...|..|+. +.| ...+.-...+-+.+..++.+.++
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 6655553222233322223333222 111 01112222234456667778889
Q ss_pred HHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhHHHHHHHHHhhc
Q 000196 296 LVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTITSHLREAIA 372 (1874)
Q Consensus 296 ~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~-~~p~l~~i~~~l~~~L~ 372 (1874)
.||++.++.|..|+.|=+.+ .-=+-++++|.+.|.+.+ .|++-|+.|.-++..||.. .. +.+++.+.++|+
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~lt 666 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLT 666 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhcc
Confidence 99999999999999763321 112568889999996543 5899999999888889874 33 345677788998
Q ss_pred CCCCCCCchhHHHHHHHHHH
Q 000196 373 PRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 373 ~~~~~~~~~a~~~l~~l~~~ 392 (1874)
|...-+-..|+.|+..|++.
T Consensus 667 D~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHh
Confidence 87655556788999888874
No 66
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.95 E-value=0.009 Score=74.91 Aligned_cols=343 Identities=10% Similarity=0.103 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHHHHHhhhcCC-ChhhhhhHHHHHhHhhccccCcc-hhH---------HHHHHHHHHhhcccCC--ChH
Q 000196 60 GEAFSRFMDQLYDRISGLLESN-DAAENLGALRAIDELIDVALGEN-ASK---------VSKFSNYMRTVFEVKR--DRE 126 (1874)
Q Consensus 60 ~~~~~~~~~~l~~~i~~l~~s~-~~~~r~~~i~ai~~li~~~~~~~-~~~---------~~~~~~~L~~~l~~~~--d~~ 126 (1874)
++-+......|.+++...+++. +...-.+.+.++-.+++-...+. ... +.++........+... |..
T Consensus 33 ~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~ 112 (415)
T PF12460_consen 33 PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDR 112 (415)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchH
Confidence 4445666666777766666543 33333444455554443321111 011 1222222222221122 468
Q ss_pred HHHHHHHHHHHHhhhC-CCcchHHHHHHHHHHH-----hhhcCCCc---chhHHHHHHHHHHHHhhcCccchhchHHHHH
Q 000196 127 ILVLASKVLGHLARAG-GAMTADEVEFQVKMAL-----DWLRGDRV---EYRRFAAVLILKEMAENASTVFNVHVAEFVD 197 (1874)
Q Consensus 127 v~~~aa~~lg~l~~~~-g~~~~~~v~~~~~~~~-----~~l~~~~~---~~~r~aA~~~l~~la~~~p~~~~~~l~~il~ 197 (1874)
+...++..++.++..- .....++++......+ .-++.+.. +..+..-.++-+.++.--|+.-.|....++.
T Consensus 113 ~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~ 192 (415)
T PF12460_consen 113 VLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQ 192 (415)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHH
Confidence 8888888888887752 2223334333333332 00111111 1222222233334444345555567778888
Q ss_pred HHHHhh-cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhH
Q 000196 198 AIWVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMM 276 (1874)
Q Consensus 198 ~i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~ 276 (1874)
.++... ...++.+|.+++.++..++.-.. .. +.+..+++.....+.+..+...+..++.++.-+..+-=--..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~--~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWP--DD----DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCC--Ch----hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 877654 45568889998888776554311 11 134455555544441111233455555554333221000011
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh------------hHHHHHHHHHHHHHHHhhcCCC--CcchHH
Q 000196 277 SRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD------------RFVTNYLKICMNHILTVLRIPA--ERDSGF 342 (1874)
Q Consensus 277 ~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~------------~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~ 342 (1874)
|...++...++..+++ +.+...+...++.+....++ -+-+.++..++|.+.+..+... .|...+
T Consensus 267 ~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL 344 (415)
T PF12460_consen 267 PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYL 344 (415)
T ss_pred chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHH
Confidence 3344455566666666 66777777777777654221 1233567788888887776544 478899
Q ss_pred HHHHHHHhhchhhh-hhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000196 343 IALGEMAGALDGEL-FHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFS 410 (1874)
Q Consensus 343 ~alg~la~~v~~~~-~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~ 410 (1874)
.|++.+...++..+ .++++.+++.+.++|...+.+....+++++..+.+.-.+.+.+|++.+++.|++
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99999999999874 589999999999999655554556788888888887666788899999988774
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.089 Score=65.30 Aligned_cols=231 Identities=23% Similarity=0.212 Sum_probs=118.3
Q ss_pred HHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHH
Q 000196 482 VQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1874)
Q Consensus 482 ~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1874)
+-.||.-|++|.- +.+..-+-+-+..++.+.-+.||+.|+..+-+++..-+ ..+...
T Consensus 126 ~giAL~GLS~fvT--pdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP---------------------eAlr~~ 182 (877)
T KOG1059|consen 126 VGLALSGLSCIVT--PDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP---------------------EALRPC 182 (877)
T ss_pred hhheecccccccC--chhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh---------------------HhHhhh
Confidence 3568888888732 12221122234577888889999988876666654221 112222
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHH
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1874)
. +-|..-|.|+++.|..+|+.+++.|+..||...+| |.+.
T Consensus 183 F---------------------------------------prL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-LAP~ 222 (877)
T KOG1059|consen 183 F---------------------------------------PRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-LAPL 222 (877)
T ss_pred H---------------------------------------HHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-ccHH
Confidence 2 23334567888888888999999999999876554 2222
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHh---
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV--- 718 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~--- 718 (1874)
+..+++ .+.+++ .-..-+.+++.+.---|.+-+..++++. ..+.. ..-.+-+.+|+..+..+
T Consensus 223 ffkllt---tSsNNW-mLIKiiKLF~aLtplEPRLgKKLieplt----~li~s-------T~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 223 FYKLLV---TSSNNW-VLIKLLKLFAALTPLEPRLGKKLIEPIT----ELMES-------TVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred HHHHHh---ccCCCe-ehHHHHHHHhhccccCchhhhhhhhHHH----HHHHh-------hHHHHHHHHHHHHheeehhc
Confidence 333333 221221 1122333444443222333333333332 22221 11122233454443322
Q ss_pred -cccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000196 719 -GGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKV 797 (1874)
Q Consensus 719 -~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~ 797 (1874)
++.+-..-+.-.+.-+...+.| ++...|=.++-+++.++..+...+.- --+.+++.|. +.++.+|..|+.+
T Consensus 288 ~g~~d~~asiqLCvqKLr~fied-sDqNLKYlgLlam~KI~ktHp~~Vqa------~kdlIlrcL~-DkD~SIRlrALdL 359 (877)
T KOG1059|consen 288 SGMSDHSASIQLCVQKLRIFIED-SDQNLKYLGLLAMSKILKTHPKAVQA------HKDLILRCLD-DKDESIRLRALDL 359 (877)
T ss_pred cCCCCcHHHHHHHHHHHhhhhhc-CCccHHHHHHHHHHHHhhhCHHHHHH------hHHHHHHHhc-cCCchhHHHHHHH
Confidence 1111111122222233333344 35677888888999888776554332 3345566664 3467899888877
Q ss_pred H
Q 000196 798 L 798 (1874)
Q Consensus 798 l 798 (1874)
+
T Consensus 360 l 360 (877)
T KOG1059|consen 360 L 360 (877)
T ss_pred H
Confidence 6
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.93 E-value=0.00013 Score=83.94 Aligned_cols=180 Identities=19% Similarity=0.235 Sum_probs=118.8
Q ss_pred CCCCHHHHHHHHHHHHhhhcCC-cC----ccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHH
Q 000196 609 NDEDFDVREYAISVAGRLSEKN-PA----YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1874)
Q Consensus 609 ~D~~~~VR~~a~~~l~~l~~~~-p~----~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1874)
.+.+.+.|..|+.-|.+++..+ +. .+.+.+++++..+...+.+. -......|+.++..++...+..+.||++.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 5677888888888888887776 22 23344443333333333221 23445689999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhH-HHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc
Q 000196 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISEL-MPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l-lp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~ 762 (1874)
+++.|+..+.+. ...++..+..|+..+....+ +.+.+ .+.+...+.+. ++..|..++..+..++...+
T Consensus 95 ~l~~Ll~~~~~~-----~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 95 LLPPLLKKLGDS-----KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSK-NPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHGGG--------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHcc
Confidence 999999999975 66788888899998887654 33455 55566666655 68899999999999998888
Q ss_pred ---ccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 763 ---YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 763 ---~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
..+.....++.+.+.+...+.+ .+++||..+-+++..+-
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D-~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSD-ADPEVREAARECLWALY 205 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTS-S-HHHHHHHHHHHHHHH
T ss_pred chHhhhcccchHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
Confidence 3333322346788888888865 47899999999988763
No 69
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.91 E-value=0.00052 Score=76.30 Aligned_cols=353 Identities=12% Similarity=0.090 Sum_probs=191.1
Q ss_pred HHHHHHHHHcCCCCch-hhHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCCCh-hhhhhHHHHHhHhhcccc
Q 000196 25 ALNRILADLCTHGNPK-EGASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESNDA-AENLGALRAIDELIDVAL 101 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~-~~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~~~-~~r~~~i~ai~~li~~~~ 101 (1874)
.+.++.++|.|..-+. -.|..+.+.++ .+|-++- ....+ .-.+.++.+++.+.+. --+.-|.-|+..+.++..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~L---S~E~~PP-Iq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLL---SKETSPP-IQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHh---ccccCCC-chhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence 5688888898864222 23655566555 5555543 22222 1245667777744222 234556777777765532
Q ss_pred CcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH--HHHHHHHhhhcCCCc-chhHHHHHH
Q 000196 102 GENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE--FQVKMALDWLRGDRV-EYRRFAAVL 175 (1874)
Q Consensus 102 ~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~--~~~~~~~~~l~~~~~-~~~r~aA~~ 175 (1874)
.+ +++ ....+.+-.++. +.+.+|++.|.|+||.+|..+.. --|+|- ..++.++..+.+... -.--.-|.+
T Consensus 148 ~Q--TkvVvd~~AVPlfiqlL~-s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TW 223 (526)
T COG5064 148 QQ--TKVVVDAGAVPLFIQLLS-STEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATW 223 (526)
T ss_pred cc--eEEEEeCCchHHHHHHHc-CchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHH
Confidence 21 111 112233333442 45789999999999999864211 122221 134455555554332 122234678
Q ss_pred HHHHHHhh-cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHhhccCCC
Q 000196 176 ILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNA 252 (1874)
Q Consensus 176 ~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~i~~~~~~~l~~~~ 252 (1874)
.|+-++.+ -|.---..+.+.+|.+.+.+...+++|-..|++|++-+.+. +.+..+.. ..+-..+...|..++
T Consensus 224 tLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg-----~~E~i~avld~g~~~RLvElLs~~s 298 (526)
T COG5064 224 TLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG-----PNEKIQAVLDVGIPGRLVELLSHES 298 (526)
T ss_pred HHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC-----cHHHHHHHHhcCCcHHHHHHhcCcc
Confidence 88889987 34333567788899998988888888888999999865431 11111111 011222333333332
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHH
Q 000196 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILT 330 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~ 330 (1874)
..++.-++..+|-++.+....-+--+. ..+..+...++++...+|+.+|++|..+.+-..++. +..+ ..+.|.|..
T Consensus 299 -a~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqi-qavid~nliPpLi~ 376 (526)
T COG5064 299 -AKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQI-QAVIDANLIPPLIH 376 (526)
T ss_pred -ccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHH-HHHHhcccchHHHH
Confidence 334455555666555433211000000 012233334678888999999999999876555432 2222 356677777
Q ss_pred hhcCCC--CcchHHHHHHHHHhhc-h-hhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 331 VLRIPA--ERDSGFIALGEMAGAL-D-GELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 331 ~L~~~~--~R~~a~~alg~la~~v-~-~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
.|...+ .|-.|+-++.+..... + .++..|+ ...+..+...|.-...+...-++.||..+.+.
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 776543 4556777777743221 1 1233444 23445555555333333445578888877653
No 70
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.91 E-value=0.00028 Score=81.04 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=124.6
Q ss_pred CCCcchhHHHHHHHHHHHHhhc-----CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENA-----STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY 237 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~-----p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~ 237 (1874)
++.+|..|..|+.-|+.+..+. +..+.+++.++++.|...+.|....|-..|+.++..+...+.. ....+.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----~~~~~~ 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----HFEPYA 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG----GGHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH----hHHHHH
Confidence 6788999999999999998876 3345566777778999999999999999999999888876653 234557
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i-~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~--- 313 (1874)
..++|.+...+.+++ ..++.+|..+|..++..++ +..++ ...+.....++++.+|..++..+..+....+
T Consensus 93 ~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 93 DILLPPLLKKLGDSK-KFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 888999998888875 5778898889999988554 11233 4455566789999999999988888765444
Q ss_pred hhHHH-HHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000196 314 DRFVT-NYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1874)
Q Consensus 314 ~~f~~-~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~ 355 (1874)
..+.. .+++.+.+.+...+.+++ .|..|-.++..+....|+.
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 33322 245788888888887654 6999999999998888874
No 71
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.16 Score=61.19 Aligned_cols=260 Identities=15% Similarity=0.072 Sum_probs=127.8
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchH
Q 000196 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTAD 148 (1874)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~ 148 (1874)
.+.=.|.+++++.|.--|++--.||..|-.+..+. -+.. +-+.+=+....+..+.-.|-+.|-+.... ....+
T Consensus 65 ~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv--lm~t---ssiMkD~~~g~~~~~kp~AiRsL~~Vid~--~tv~~ 137 (898)
T COG5240 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV--LMGT---SSIMKDLNGGVPDDVKPMAIRSLFSVIDG--ETVYD 137 (898)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh--hHHH---HHHHHhhccCCccccccHHHHHHHHhcCc--chhhh
Confidence 45556788999999999998888999886664221 1111 11111111222334444555555544331 11111
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhH---------HHHHHHHHH
Q 000196 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAV---------RERAVEALR 219 (1874)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~V---------R~aA~~al~ 219 (1874)
++..++.++ =++...+|-||+..-.-|--+.-.....+.+..-++++..-.-|+..= --.-..|+|
T Consensus 138 -~er~l~~a~----Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalG 212 (898)
T COG5240 138 -FERYLNQAF----VSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALG 212 (898)
T ss_pred -HHHHhhhhc----cccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHH
Confidence 122233222 133445566655432222222223445566666666655333332100 000122333
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000196 220 ACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1874)
Q Consensus 220 ~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~ 299 (1874)
-+-+ +. |-. +...-.+.+.+..+......||.++.+....+...+- .+.+..+.+.+-..+.++-.+|..
T Consensus 213 lLyq-~k-r~d-------kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n-~q~~~q~rpfL~~wls~k~emV~l 282 (898)
T COG5240 213 LLYQ-SK-RTD-------KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN-SQALLQLRPFLNSWLSDKFEMVFL 282 (898)
T ss_pred HHHH-Hh-ccc-------HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhC-hHHHHHHHHHHHHHhcCcchhhhH
Confidence 2111 11 100 0011122233333322233566665554443311100 012333444555666777888988
Q ss_pred HHHHHhHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchh
Q 000196 300 SITSLLPRIAHFL-RDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 300 ~~~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~ 354 (1874)
.+..++-+++.-. ..+ ++++++..|...|+..+ .|-.|++.|..+|+..+.
T Consensus 283 E~Ar~v~~~~~~nv~~~----~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~ 336 (898)
T COG5240 283 EAARAVCALSEENVGSQ----FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ 336 (898)
T ss_pred HHHHHHHHHHHhccCHH----HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc
Confidence 8888877776533 333 45778888888888765 478999999999987664
No 72
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.024 Score=70.68 Aligned_cols=232 Identities=16% Similarity=0.181 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh-----cCCchhHH-HHHHHHHHHHHHHHhhcchhhHHHHHH-HH
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-----RDPTLAVR-ERAVEALRACLRVIEKRETRWRVQWYY-RM 240 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l-----~D~~~~VR-~aA~~al~~~~~~i~~r~~~~~~~~~~-~i 240 (1874)
+.|=+|=-++..+-+.-+..+.|++-.++....... .|-+..++ +|...|.+.....+.+.- .-.+|+. .+
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~--dF~~Wl~~~l 489 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNIL--DFDKWLQEAL 489 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHhh
Confidence 455555555555555555555555555554333333 23333444 555666666555444211 2345764 45
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHhHhHh---hhChhh
Q 000196 241 FEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHR-DRLVRLSITSLLPRIA---HFLRDR 315 (1874)
Q Consensus 241 ~~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~-~~~vr~~~~~~i~~la---~~~~~~ 315 (1874)
+|++...- ++.+-.|...+..+|.=+. ...+...+ -++...+.++++. +..||-++..++..+. .|.++.
T Consensus 490 lpEl~~~~--~~~RiiRRRVa~ilg~Wvsvq~~~e~k~---l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~ds 564 (978)
T KOG1993|consen 490 LPELANDH--GNSRIIRRRVAWILGQWVSVQQKLELKP---LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDS 564 (978)
T ss_pred CHHhhhcc--cchhHHHHHHHHHHhhhhheechHhHHH---HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhh
Confidence 66665211 1123455566667776655 22233333 2344555666665 7778999888888775 477888
Q ss_pred HHHHHHHHHHHHHHHhhcCC---CCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC--CchhHHHHHHHH
Q 000196 316 FVTNYLKICMNHILTVLRIP---AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIA 390 (1874)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~---~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~--~~~a~~~l~~l~ 390 (1874)
|.+ |++.+...+...++.. +.|...+..+|.+...+++.+.||...+++.+-.--......+ +...+..+-.++
T Consensus 565 Flp-~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV 643 (978)
T KOG1993|consen 565 FLP-YLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLV 643 (978)
T ss_pred hhh-hHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHH
Confidence 876 8888888888888643 3588999999999999999888998887766544332222222 345677888899
Q ss_pred HHhCC---CchHHHHHHHHH
Q 000196 391 RAMGP---VMEPHVRGLLDI 407 (1874)
Q Consensus 391 ~~~g~---~~~p~l~~ll~~ 407 (1874)
.++|. .+-|++-.+++.
T Consensus 644 ~alg~qS~~~~~fL~pVIel 663 (978)
T KOG1993|consen 644 NALGAQSFEFYPFLYPVIEL 663 (978)
T ss_pred HHhccCCccchHHHHHHHHH
Confidence 99996 466777666654
No 73
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.82 E-value=9.9e-05 Score=70.23 Aligned_cols=88 Identities=20% Similarity=0.078 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCc
Q 000196 128 LVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT 207 (1874)
Q Consensus 128 ~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~ 207 (1874)
++.+..+|...+..-|....++++..++.++..+ ++.+++.|++|+..|..++..+...+.+|+++|++.++..+.|++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4555666666666655567888999999998877 467778999999999999999999999999999999999999999
Q ss_pred hhHHHHHHH
Q 000196 208 LAVRERAVE 216 (1874)
Q Consensus 208 ~~VR~aA~~ 216 (1874)
+.||.+|.-
T Consensus 82 ~~Vr~~a~~ 90 (97)
T PF12755_consen 82 ENVRSAAEL 90 (97)
T ss_pred hhHHHHHHH
Confidence 999998843
No 74
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.029 Score=70.50 Aligned_cols=311 Identities=16% Similarity=0.179 Sum_probs=161.7
Q ss_pred hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhc
Q 000196 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENA 184 (1874)
Q Consensus 105 ~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~ 184 (1874)
+.+++..++-+.+++. ..|+-+++.|+-|+-|+... .+++++..+...-..|. +++-..=.+++.++-++++..
T Consensus 137 ~EmardlapeVe~Ll~-~~~~~irKKA~Lca~r~irK----~P~l~e~f~~~~~~lL~-ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 137 PEMARDLAPEVERLLQ-HRDPYIRKKAALCAVRFIRK----VPDLVEHFVIAFRKLLC-EKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred HHHhHHhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHc----CchHHHHhhHHHHHHHh-hcCCceeeeHHHHHHHHHhcC
Confidence 4566777778888886 47899999999999999985 66777777777766664 344456678999999999987
Q ss_pred Ccc---chhchHHHHHHH---HH----------hhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhc
Q 000196 185 STV---FNVHVAEFVDAI---WV----------ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1874)
Q Consensus 185 p~~---~~~~l~~il~~i---~~----------~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l 248 (1874)
|+. |...+++++..+ .. ++.||--.| .... +++++.+.+. .-.+.+..++.++...-
T Consensus 211 ~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi--~iLr----lLriLGq~d~-daSd~M~DiLaqvatnt 283 (866)
T KOG1062|consen 211 PDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQI--RILR----LLRILGQNDA-DASDLMNDILAQVATNT 283 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHH--HHHH----HHHHhcCCCc-cHHHHHHHHHHHHHhcc
Confidence 764 333333333222 11 122333333 2333 2333332222 23344555555554433
Q ss_pred cCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHH-HHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHH
Q 000196 249 GRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIV-LRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326 (1874)
Q Consensus 249 ~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~l-l~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~ 326 (1874)
.++. .++=.+|-+.++ ...=...+-+..+.-.+ -+++.+++.-+|-.+++.+.++...++.... +-=.
T Consensus 284 dssk-----N~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq-----rHr~ 353 (866)
T KOG1062|consen 284 DSSK-----NAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ-----RHRS 353 (866)
T ss_pred cccc-----cchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH-----HHHH
Confidence 2221 111112222111 11111112222222222 2334566777788888888877777665322 2234
Q ss_pred HHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHH
Q 000196 327 HILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGL 404 (1874)
Q Consensus 327 ~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~l 404 (1874)
.++.||+.++ -|..|++.+-.+...- ++ ..+++.+.+.|.....+.......-+..+++.+.|+=.=|++..
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~~--Nv----~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtm 427 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNES--NV----RVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTM 427 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhccc--cH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 5667887765 3666777665554332 22 33444444444222211122333333344444444322255544
Q ss_pred HHHHHhcC--CCHHHHH-HHHHHHHhCCCChHHHHHHHHHHHH
Q 000196 405 LDIMFSAG--LSTTLVD-ALEQITVSIPSLLPTIQDRLLDCIS 444 (1874)
Q Consensus 405 l~~ll~~~--ls~~l~~-~l~~i~~~~p~l~~~i~~~ll~~l~ 444 (1874)
+.-+-..| .+++... .++-|+..++++-.+..-+++..++
T Consensus 428 l~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~ 470 (866)
T KOG1062|consen 428 LKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALS 470 (866)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHh
Confidence 44333344 4555544 3445556667776677777766654
No 75
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.017 Score=71.49 Aligned_cols=375 Identities=16% Similarity=0.171 Sum_probs=186.1
Q ss_pred hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhh----cCCCC--cchHHHHHHHHHhhchhhhhhhhHHHH
Q 000196 291 EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVL----RIPAE--RDSGFIALGEMAGALDGELFHYLPTIT 364 (1874)
Q Consensus 291 ~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L----~~~~~--R~~a~~alg~la~~v~~~~~p~l~~i~ 364 (1874)
-.++.++++...--+-.+=+.+++.- -++ =|-.+.+.. +.|++ |+..++-+..+ .+ ...++++|
T Consensus 67 ps~~~elKKLly~ywE~vPKt~~dgk---l~~-EMILvcna~RkDLQHPNEyiRG~TLRFLckL----kE--~ELlepl~ 136 (948)
T KOG1058|consen 67 PSRNHELKKLLYYYWELVPKTDSDGK---LLH-EMILVCNAYRKDLQHPNEYIRGSTLRFLCKL----KE--PELLEPLM 136 (948)
T ss_pred ccCchHHHHHHHHHHHHccccCCCcc---cHH-HHHHHHHHHhhhccCchHhhcchhhhhhhhc----Cc--HHHhhhhH
Confidence 35667777765433332222222110 111 133334444 34443 77776655443 21 23567888
Q ss_pred HHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHH-HHHHHHH---------------HHhC
Q 000196 365 SHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTL-VDALEQI---------------TVSI 428 (1874)
Q Consensus 365 ~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l-~~~l~~i---------------~~~~ 428 (1874)
+.++.+|...+.-++..|+-|+..|-+. ++.+.|..++++...+....++.. +.|+-.+ .+.+
T Consensus 137 p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi 215 (948)
T KOG1058|consen 137 PSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQI 215 (948)
T ss_pred HHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhc
Confidence 8999999776665666777788877766 567778888888776654433332 2222222 2233
Q ss_pred CCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcc-hhhHHHHH
Q 000196 429 PSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDL-LEFARDSV 507 (1874)
Q Consensus 429 p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l-~~~v~~~~ 507 (1874)
|.+.+.++--+.+.|..+- ...... ..|+ .|+
T Consensus 216 ~~~~~~LqlViVE~Irkv~----------------------------------------------~~~p~~~~~~i-~~i 248 (948)
T KOG1058|consen 216 PSFNDSLQLVIVELIRKVC----------------------------------------------LANPAEKARYI-RCI 248 (948)
T ss_pred cCccHHHHHHHHHHHHHHH----------------------------------------------hcCHHHhhHHH-HHH
Confidence 3333322222222221110 000000 0122 244
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG 587 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~ 587 (1874)
..++.+.++.|+-.||.++..+.. ..+.+......++..+..++|-.+..-++.-|.+
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS~----------------------~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~ 306 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLSN----------------------DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSE 306 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEccC----------------------CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHH
Confidence 455655566666666554433321 1122333333444555566666665555444421
Q ss_pred CCCc-chhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC-cCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 588 NRGF-DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKN-PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 588 ~~~f-~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~-p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
-..- ...+ .+.+--++..++.++.+||..++.+.-.|+... -..+.-.|.+-+...-.. +.. ...+-|. +
T Consensus 307 l~~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d-~~~~yRq----l 378 (948)
T KOG1058|consen 307 LKALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESD-DNGKYRQ----L 378 (948)
T ss_pred HhhhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccc-cchHHHH----H
Confidence 0000 0001 122333445678899999999999877776654 222333333322211111 111 1111133 3
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
|..-+..|.-.+..+...+++.++..+.|. ++.....++.-+.+..+..+..- ..++..+++.+..-.+..
T Consensus 379 Liktih~cav~Fp~~aatvV~~ll~fisD~-----N~~aas~vl~FvrE~iek~p~Lr----~~ii~~l~~~~~~irS~k 449 (948)
T KOG1058|consen 379 LIKTIHACAVKFPEVAATVVSLLLDFISDS-----NEAAASDVLMFVREAIEKFPNLR----ASIIEKLLETFPQIRSSK 449 (948)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHhCchHH----HHHHHHHHHhhhhhcccc
Confidence 333333444445567788999999999985 55555555665666555443321 123334444443333455
Q ss_pred hHHHHHHHHHHHHhhcc
Q 000196 746 KREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~ 762 (1874)
....|+|.+|..|+..+
T Consensus 450 i~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 450 ICRGALWILGEYCEGLS 466 (948)
T ss_pred cchhHHHHHHHHHhhhH
Confidence 66789999998876654
No 76
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.78 E-value=0.082 Score=70.94 Aligned_cols=132 Identities=17% Similarity=0.273 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcch-hhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc
Q 000196 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDD-FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY 633 (1874)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~-~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1874)
.+.++..+..++.. ..+|...+|..++.+|+.-...|+ .|+.+++-..+-.-++|.+..||++|++++|+.+-.+|..
T Consensus 811 ~~sfD~yLk~Il~~-l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 811 SQSFDPYLKLILSV-LGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHhhHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 45577777666654 569999999999999963223344 3566777788888899999999999999999999999877
Q ss_pred cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhcc
Q 000196 634 VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1874)
Q Consensus 634 v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1874)
+..+..++ ...+.+ +...+|..+++.+.++++..|++-+ +..+.-.++.+..|+
T Consensus 890 ~~qyY~~i----~erIlD--tgvsVRKRvIKIlrdic~e~pdf~~--i~~~cakmlrRv~DE 943 (1692)
T KOG1020|consen 890 IFQYYDQI----IERILD--TGVSVRKRVIKILRDICEETPDFSK--IVDMCAKMLRRVNDE 943 (1692)
T ss_pred HHHHHHHH----HhhcCC--CchhHHHHHHHHHHHHHHhCCChhh--HHHHHHHHHHHhccc
Confidence 65555543 333333 3567888999999999998876421 234444455555554
No 77
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.76 E-value=0.0032 Score=74.65 Aligned_cols=201 Identities=15% Similarity=0.124 Sum_probs=140.8
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHh-hcc-cc
Q 000196 24 DALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDEL-IDV-AL 101 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~l-i~~-~~ 101 (1874)
+.+...+..|..++...|.++ |..++.........+++......|...+.+.++.....++.-|..++.-| +.+ .+
T Consensus 43 ~~L~~~Id~l~eK~~~~Re~a--L~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 43 DKLKEAIDLLTEKSSSTREAA--LEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHH--HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 347778888877654333333 77777777788888888888888999888988876667777777766666 332 11
Q ss_pred CcchhHHHHHHHHHHhhcccCC-ChHHHHHHHHHHHHHhhhCCCcchHHHH--HHHHHHH--hhhcCCC---------cc
Q 000196 102 GENASKVSKFSNYMRTVFEVKR-DREILVLASKVLGHLARAGGAMTADEVE--FQVKMAL--DWLRGDR---------VE 167 (1874)
Q Consensus 102 ~~~~~~~~~~~~~L~~~l~~~~-d~~v~~~aa~~lg~l~~~~g~~~~~~v~--~~~~~~~--~~l~~~~---------~~ 167 (1874)
.+.......+.+.|..++.... .+.++..++.+||-++..++.-..+... ..++.++ ..++.++ ..
T Consensus 121 ~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 121 EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 2345666778888988886422 3466677778999887765544322221 2333221 1222222 24
Q ss_pred hhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 168 YRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
...-||+..|+-|+..+|. .+..++...+|.+...|..++..||-||.+++.-+.+...
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999887 4667788899999999999999999999999998877654
No 78
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.26 Score=61.39 Aligned_cols=348 Identities=16% Similarity=0.233 Sum_probs=174.4
Q ss_pred hhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 000196 274 FMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAG 350 (1874)
Q Consensus 274 ~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~ 350 (1874)
|+.|.+. ++...|+.++++..+.||+-++.++-.+.---| ..+..++|-|..-|..++ .-++|...+.++|+
T Consensus 136 fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 136 IVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR 210 (877)
T ss_pred ccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 5556554 577889999999999999988877765532112 246778888888888765 45789999999998
Q ss_pred hchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 000196 351 ALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITVSIP 429 (1874)
Q Consensus 351 ~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~-~ll~~ll~~~ls~~l~~~l~~i~~~~p 429 (1874)
.-++...++-|.+...+...-.++ .-...+..||.|+- +.|-+. .+++++.+- .....+
T Consensus 211 KnPknyL~LAP~ffkllttSsNNW---mLIKiiKLF~aLtp-----lEPRLgKKLieplt~l------i~sT~A------ 270 (877)
T KOG1059|consen 211 KNPQNYLQLAPLFYKLLVTSSNNW---VLIKLLKLFAALTP-----LEPRLGKKLIEPITEL------MESTVA------ 270 (877)
T ss_pred hCCcccccccHHHHHHHhccCCCe---ehHHHHHHHhhccc-----cCchhhhhhhhHHHHH------HHhhHH------
Confidence 888765555555554443221111 11234445554332 222221 233332210 000101
Q ss_pred CChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhh
Q 000196 430 SLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVL 509 (1874)
Q Consensus 430 ~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~ 509 (1874)
..-+.+.+..++++ .+..++ .+..+.+.+|.+-|+.|
T Consensus 271 ------mSLlYECvNTVVa~-s~s~g~-------------------~d~~asiqLCvqKLr~f----------------- 307 (877)
T KOG1059|consen 271 ------MSLLYECVNTVVAV-SMSSGM-------------------SDHSASIQLCVQKLRIF----------------- 307 (877)
T ss_pred ------HHHHHHHHHHheee-hhccCC-------------------CCcHHHHHHHHHHHhhh-----------------
Confidence 01122233323333 111000 01334566676666654
Q ss_pred hccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCC
Q 000196 510 YLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNR 589 (1874)
Q Consensus 510 ~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~ 589 (1874)
+++.++..+.-+..++.+++...+. +.+.-.++ +-.+..|.|+.||..++.-+.+--
T Consensus 308 -iedsDqNLKYlgLlam~KI~ktHp~------------------~Vqa~kdl----IlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 308 -IEDSDQNLKYLGLLAMSKILKTHPK------------------AVQAHKDL----ILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred -hhcCCccHHHHHHHHHHHHhhhCHH------------------HHHHhHHH----HHHHhccCCchhHHHHHHHHHHHh
Confidence 4555667776677777777654331 11222333 233568999999999988774100
Q ss_pred CcchhhccHhhHHHHHHHhCCCCH-HHHHH-HHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHH
Q 000196 590 GFDDFLAQADCLSAIFAALNDEDF-DVREY-AISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLG 667 (1874)
Q Consensus 590 ~f~~~L~~~~~l~~L~~~l~D~~~-~VR~~-a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1874)
.-+. -.++++.|+..+.+.+. ..|.. ...+++-.+..+-.++.. |. ..+..+.+|..-++ .+.-..-+..+-
T Consensus 365 skkN---l~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~Itd-FE-WYlsVlveLa~l~~-~~~G~~I~eQi~ 438 (877)
T KOG1059|consen 365 SKKN---LMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITD-FE-WYLSVLVELARLEG-TRHGSLIAEQII 438 (877)
T ss_pred hhhh---HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhh-HH-HHHHHHHHHHhccc-cchhhHHHHHHH
Confidence 0000 13566766655544333 44543 334454444444333321 11 11222323322211 111111222333
Q ss_pred HHHHhCccccccchHHHHHHHHH--HhhccCCC-CCChhHHHHHHHHHHHHHHhc
Q 000196 668 CLIRNCERLIRPYIAPIHKALVA--RLLEGTGI-NANNGIISGVLVTVGDLARVG 719 (1874)
Q Consensus 668 ~l~~~~~~~~~py~~~il~~ll~--~l~~~~~~-~~~~~v~~~~~~~l~~La~~~ 719 (1874)
+++-.. +.++||.-..+..|+. .+...... .....|..+++.++|+.++..
T Consensus 439 Dv~iRV-~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~v 492 (877)
T KOG1059|consen 439 DVAIRV-PSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFV 492 (877)
T ss_pred HHheec-hhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHh
Confidence 333222 3567776666666555 11111000 124567778888888887754
No 79
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.009 Score=74.34 Aligned_cols=253 Identities=17% Similarity=0.250 Sum_probs=155.0
Q ss_pred HHHHHHHHHccCCCchhhHHHHHHHHHHHHHHh---CCCCCCCccchhHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHH
Q 000196 857 VAINSLMRILRDPSLASYHQKVVGSLMFIFKSM---GLGCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTLVSIVRQ 932 (1874)
Q Consensus 857 ~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~---~~~~~~~l~~ilp~ll~~l~~~-~~~~~~~~~~~l~~lv~~~~~ 932 (1874)
.+-.+.+..|+|...-...-++++++...+.+. ...+.||++.+.-.+...+... .-+-|-.++..+++++..+++
T Consensus 526 l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e 605 (978)
T KOG1993|consen 526 LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE 605 (978)
T ss_pred HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344567777888754445556777777777663 3456888887777777666543 223577888999999999999
Q ss_pred hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhh-H---
Q 000196 933 HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTY-V--- 1008 (1874)
Q Consensus 933 ~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~-~--- 1008 (1874)
+|+||...|+..+-..|...... +-++..++.++..++.++|..=.+..|-++|-+--.. |.. +++... .
T Consensus 606 ~I~P~~~~ivq~lp~LWe~s~~e----~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~-D~~-sP~hv~L~EDg 679 (978)
T KOG1993|consen 606 HIAPYASTIVQYLPLLWEESEEE----PLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST-DPS-SPEHVYLLEDG 679 (978)
T ss_pred hhhHHHHHHHHHHHHHHhhhccC----cHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc-CCC-CCceeehhhhH
Confidence 99999999999999999864311 2345578889999999999876666555666432222 222 222111 1
Q ss_pred HHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHH--HHHHHHHHhhcccccccchhHhHHHHHHHHhCCCCHHHHH
Q 000196 1009 LDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIR--RAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRK 1086 (1874)
Q Consensus 1009 ~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr--~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~ 1086 (1874)
..+-.++......+.+-+-.++|-++..++.+ ...+| -..+.+..-|-..+=+..|...|...+.+.+.+-..+--.
T Consensus 680 meLW~~~L~n~~~l~p~ll~L~p~l~~~iE~s-te~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~ 758 (978)
T KOG1993|consen 680 MELWLTTLMNSQKLTPELLLLFPHLLYIIEQS-TENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQ 758 (978)
T ss_pred HHHHHHHHhcccccCHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 12222222222345555556778777777654 22222 2222222222222334568888888888888654444455
Q ss_pred HHHHHHHHHHHH---hcc-ccccchhhHHHHHHh
Q 000196 1087 DAVDALCCLAHA---LGE-DFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1087 ~al~~L~~l~~~---~g~-~f~~~ip~i~~~l~~ 1116 (1874)
+.+.+++.+++. +|. -|.+-+|.+...+..
T Consensus 759 avLkiveili~t~~il~~~~~~~~L~~lf~~I~~ 792 (978)
T KOG1993|consen 759 AVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAE 792 (978)
T ss_pred HHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHh
Confidence 666666666554 232 344556666666643
No 80
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00045 Score=77.55 Aligned_cols=406 Identities=19% Similarity=0.174 Sum_probs=208.9
Q ss_pred HHHHHHHHHhhhcCCcCccc--hHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhh
Q 000196 616 REYAISVAGRLSEKNPAYVL--PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1874)
Q Consensus 616 R~~a~~~l~~l~~~~p~~v~--p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1874)
|+++...++++-..+.-.+. ..+| .++.+.+++....+| .|+-.+..+.++.-. .--....+.++..+.
T Consensus 25 rEav~~ll~~lEd~~~i~fyS~~plr-----altvL~ySDnlnlqr-saalafAeitek~vr---~Vsres~epvl~llq 95 (550)
T KOG4224|consen 25 REAVADLLNRLEDRNAISFYSASPLR-----ALTVLKYSDNLNLQR-SAALAFAEITEKGVR---RVSRESNEPVLALLQ 95 (550)
T ss_pred HHHHHHHHHhhcccccccccCCCccc-----hheeeeeccccccch-HHHHHHHHHHHHHHH---HhhhhhhhHHHHHHh
Confidence 56666677776665533222 1133 345566762333334 344455555543211 111122222333333
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHhccc-chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccch
Q 000196 694 EGTGINANNGIISGVLVTVGDLARVGGF-GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYP 772 (1874)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~-~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p 772 (1874)
.. ++.+..++..++|.+|..++. .+.--+.-+=|.+.+++.|. .++|.+|++++..++..-......- ..
T Consensus 96 s~-----d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~--vevqcnaVgCitnLaT~d~nk~kiA--~s 166 (550)
T KOG4224|consen 96 SC-----DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG--VEVQCNAVGCITNLATFDSNKVKIA--RS 166 (550)
T ss_pred Cc-----chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC--cEEEeeehhhhhhhhccccchhhhh--hc
Confidence 32 566777788889988887764 34444556677888888875 5788899999998886643332111 11
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCcc
Q 000196 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1874)
Q Consensus 773 ~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1874)
.-+..+.. |.+.++-.+++.+.-.+-.+ .-... +.. ....
T Consensus 167 GaL~pltr-LakskdirvqrnatgaLlnm---Ths~E--nRr----------~LV~------------------------ 206 (550)
T KOG4224|consen 167 GALEPLTR-LAKSKDIRVQRNATGALLNM---THSRE--NRR----------VLVH------------------------ 206 (550)
T ss_pred cchhhhHh-hcccchhhHHHHHHHHHHHh---hhhhh--hhh----------hhhc------------------------
Confidence 22444445 33444556666654333222 11100 000 0000
Q ss_pred chHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHh--CCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 000196 853 YYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSM--GLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV 930 (1874)
Q Consensus 853 ~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~--~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~ 930 (1874)
.-.++.|+..++...+ ..+..++.|+..|.-+- .....+-=|+++|.++..+++.++.++..+-.+|+.+..-.
T Consensus 207 ---aG~lpvLVsll~s~d~-dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 207 ---AGGLPVLVSLLKSGDL-DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred ---cCCchhhhhhhccCCh-hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 0011223333332222 12234555555554321 11223444679999999999999888877666666554321
Q ss_pred HHhHHHh-----HHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCch
Q 000196 931 RQHIRKY-----LQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDY 1005 (1874)
Q Consensus 931 ~~~i~~y-----~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~ 1005 (1874)
.+.++. +|-++.++ +.+..| +...-+.||..++..=..+----=.-++.+++++|+-.| ..
T Consensus 283 -~Yq~eiv~ag~lP~lv~Ll----qs~~~p------lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d---nE 348 (550)
T KOG4224|consen 283 -EYQREIVEAGSLPLLVELL----QSPMGP------LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD---NE 348 (550)
T ss_pred -hhhhHHHhcCCchHHHHHH----hCcchh------HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC---ch
Confidence 122222 23333333 332211 011123333333322111111111224556777786433 23
Q ss_pred hhHHHHHHHHHHHhcchhhhhhh-----hHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccchh--HhHHHHHHHHhC
Q 000196 1006 TYVLDILHTLEVFGGTLDEHMHL-----LLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLD 1078 (1874)
Q Consensus 1006 ~~~~~il~~l~~~g~~~~~~~~~-----ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~ 1078 (1874)
+..+....++-.++.+.+.-... -+|-+..++.. .+.+++...-.++..++..-+...++ +.|++.|+..+.
T Consensus 349 eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~ 427 (550)
T KOG4224|consen 349 EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTG 427 (550)
T ss_pred hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccC
Confidence 34455555555544333222222 24555555543 47888888888999988775544432 357788888888
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 000196 1079 GKNDELRKDAVDALCCLAHA 1098 (1874)
Q Consensus 1079 ~~~~~l~~~al~~L~~l~~~ 1098 (1874)
+.+.+++.++..+|..+...
T Consensus 428 s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 428 SESEEVRGNAAAALINLSSD 447 (550)
T ss_pred ccchhhcccHHHHHHhhhhh
Confidence 88999999999999888754
No 81
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.69 E-value=2.8e-05 Score=66.16 Aligned_cols=54 Identities=28% Similarity=0.255 Sum_probs=50.9
Q ss_pred chhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000196 167 EYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1874)
Q Consensus 167 ~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~ 220 (1874)
|..|.+|+.+|+.++++++..+.++++.+++.+...|.|+++.||.+|+.||++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 357999999999999999999999999999999999999999999999999985
No 82
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.19 Score=62.12 Aligned_cols=362 Identities=16% Similarity=0.174 Sum_probs=188.3
Q ss_pred HHHHHHHHHcCCC--C-chhhHHHHHHHHHHHHH--hhhChHHHHHHHHHHH-----------HH--HHhhhcCCChhhh
Q 000196 25 ALNRILADLCTHG--N-PKEGASLALRKHIEEQA--RDLGGEAFSRFMDQLY-----------DR--ISGLLESNDAAEN 86 (1874)
Q Consensus 25 ~~~~~~~~L~s~~--~-~~~~aa~~l~~~v~~~~--~~~~~~~~~~~~~~l~-----------~~--i~~l~~s~~~~~r 86 (1874)
-+.-++.++++-. + ++.+.-.||..+=...= +-+++-+=++|.-.+. .. -.+|++|+...+|
T Consensus 12 GL~vFISDlRncq~keaE~kRInkELanIRskFk~~K~L~gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEK 91 (938)
T KOG1077|consen 12 GLAVFISDLRNCQSKEAEEKRINKELANIRSKFKGDKTLDGYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEK 91 (938)
T ss_pred hHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHH
Confidence 3666778886532 2 32346666666542221 1244444445543331 11 1367889999999
Q ss_pred hhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc-CCC
Q 000196 87 LGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDR 165 (1874)
Q Consensus 87 ~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-~~~ 165 (1874)
.-|-+.+..|+.-. ...++-..+-+++=+. +.|+.-+-.|..++|.+ ||-...+-+...++.+ |. ++.
T Consensus 92 qIGYl~is~L~n~n----~dl~klvin~iknDL~-srn~~fv~LAL~~I~ni---G~re~~ea~~~DI~Kl---LvS~~~ 160 (938)
T KOG1077|consen 92 QIGYLFISLLLNEN----SDLMKLVINSIKNDLS-SRNPTFVCLALHCIANI---GSREMAEAFADDIPKL---LVSGSS 160 (938)
T ss_pred HHhHHHHHHHHhcc----hHHHHHHHHHHHhhhh-cCCcHHHHHHHHHHHhh---ccHhHHHHhhhhhHHH---HhCCcc
Confidence 99999999998553 2223323445666554 45777777777777654 3333333333344433 33 344
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhH------------
Q 000196 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR------------ 233 (1874)
Q Consensus 166 ~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~------------ 233 (1874)
..-.|..|.+++-.|-...|+.+.+ ......|+..|.|.+..|-.||..-+..+.. +.+...
T Consensus 161 ~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk----~~p~~yk~~~~~avs~L~ 234 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVK----KNPESYKTCLPLAVSRLS 234 (938)
T ss_pred hHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHH----cCCHHHhhhHHHHHHHHH
Confidence 4456666666666777788887654 2455566677888887776666554333221 221111
Q ss_pred -------------------HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh---------------------
Q 000196 234 -------------------VQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE--------------------- 273 (1874)
Q Consensus 234 -------------------~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~--------------------- 273 (1874)
..|+..=+-.+++.+.-+.|.-++..-..++..++....+
T Consensus 235 riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI 314 (938)
T KOG1077|consen 235 RIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAI 314 (938)
T ss_pred HHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHH
Confidence 1232211111111121111122222222333333332110
Q ss_pred -------hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC---cchHHH
Q 000196 274 -------FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE---RDSGFI 343 (1874)
Q Consensus 274 -------~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~---R~~a~~ 343 (1874)
--..-+.+-|..+..++.+++.-+|-.+++.+-.+|.. +|....+..-...+++.|+.+++ |..|++
T Consensus 315 ~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSirrravD 391 (938)
T KOG1077|consen 315 SLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIRRRAVD 391 (938)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 01122333455556666777777777777777666653 22221222223444455553433 556666
Q ss_pred HHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q 000196 344 ALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG 412 (1874)
Q Consensus 344 alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ 412 (1874)
.|=.|+..-. ...|++.+.++|...+...+++...=.+.|++.+..+..=|+..+++.+--.|
T Consensus 392 LLY~mcD~~N------ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 392 LLYAMCDVSN------AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred HHHHHhchhh------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 5555543222 24455556666654433334555556667888888887778888887766554
No 83
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.64 E-value=0.56 Score=62.20 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHH-hcchhhhhhhhHHHHHHhhcCCCcHH
Q 000196 966 VLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVF-GGTLDEHMHLLLPALIRLFKVDAPVD 1044 (1874)
Q Consensus 966 ~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~-g~~~~~~~~~ilp~l~~~~~~~~~~~ 1044 (1874)
-+.+..+++-.+++.+.+ +-+.+|.++...... ..........|+..+ .....+.+..++..++.++.......
T Consensus 796 s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~s~----~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~ 870 (1549)
T KOG0392|consen 796 SFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVRSI----HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFV 870 (1549)
T ss_pred hHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHh
Confidence 455566666677777877 666777777666542 333444445555443 23345666666777777776544444
Q ss_pred HHHHHHHHHHhhccc--ccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchh-hHHHHHHhCCCCc
Q 000196 1045 IRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIP-SIHKLLLKHRLRH 1121 (1874)
Q Consensus 1045 vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip-~i~~~l~~~~~~~ 1121 (1874)
-|..|.+.+..+... ..+.+|..-++.+|.+.+.+....+|.++-.++..++.-++-.-.++=| .+.+-|...+
T Consensus 871 ~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~k--- 947 (1549)
T KOG0392|consen 871 RRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASK--- 947 (1549)
T ss_pred hhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhH---
Confidence 566666677777665 5677899999999999999888899999999999998887655545544 5556665532
Q ss_pred hhHHHHHHHHhcC
Q 000196 1122 KEFEEIEGRLRRR 1134 (1874)
Q Consensus 1122 ~~~~~~~~~~~~~ 1134 (1874)
+++.+.++.+.++
T Consensus 948 e~erkFLeqlldp 960 (1549)
T KOG0392|consen 948 EEERKFLEQLLDP 960 (1549)
T ss_pred HHHHHHHHHhcCc
Confidence 3444455555543
No 84
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.56 E-value=0.41 Score=64.07 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=54.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
-+-+.|+|++|+..|++.+...+++ .....+-.|+..+|+|+.....+...... +++.. ......+.+...+|+
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l-~p~~~-~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALEL-DPDYS-KALNRRANAYDGLGK 209 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc-CCCCH-HHHHHHHHHHHHcCC
Confidence 4678899999999999988755442 34567778999999998777666543321 22221 122345678888999
Q ss_pred hhhHHHH
Q 000196 1443 WDQMAEY 1449 (1874)
Q Consensus 1443 Wd~~~~~ 1449 (1874)
|+.-...
T Consensus 210 ~~eA~~~ 216 (615)
T TIGR00990 210 YADALLD 216 (615)
T ss_pred HHHHHHH
Confidence 9875543
No 85
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.53 E-value=0.0074 Score=78.37 Aligned_cols=297 Identities=14% Similarity=0.098 Sum_probs=173.4
Q ss_pred HHHHHhhhcC-CChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCc----
Q 000196 71 YDRISGLLES-NDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAM---- 145 (1874)
Q Consensus 71 ~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~---- 145 (1874)
...+...+++ ...+.|.+|+..+..|-..- ....++-|..+|+..++. +.+.+|+..|.+++-++...-...
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i--~de~~LDRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYI--DDEVKLDRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhc--chHHHHhhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 3334455554 45667888888887775442 345678899999999996 568899999999999887642222
Q ss_pred chHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH-HHHhhcCCchhHHHHHHHHHHHHHHH
Q 000196 146 TADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA-IWVALRDPTLAVRERAVEALRACLRV 224 (1874)
Q Consensus 146 ~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~-i~~~l~D~~~~VR~aA~~al~~~~~~ 224 (1874)
.--|++.+++.+-..+.+......|.|=...|..||..+-..+ ..-... .-..+.||+.+- +.+
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl----e~~q~~~~~g~~n~~nset---~~~-------- 565 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL----ELTQELRQAGMLNDPNSET---APE-------- 565 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH----HHHHHHHhcccccCccccc---ccc--------
Confidence 2225666666666655554666788887777888887654432 111111 111245665530 111
Q ss_pred HhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHHHHHHhhcchhHHHHHHHH
Q 000196 225 IEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEIVLRYLEHRDRLVRLSITS 303 (1874)
Q Consensus 225 i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~ll~~~~~~~~~vr~~~~~ 303 (1874)
........+.+..+-+....-+.++ +.-++.+=+..+..|.. =|...+-.+ ++..+..++++++...|.+-.+
T Consensus 566 --~~~~~~~~~L~~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~---FFGk~ksND~iLshLiTfLNDkDw~LR~aFfd 639 (1431)
T KOG1240|consen 566 --QNYNTELQALHHTVEQMVSSLLSDS-PPIVKRALLESIIPLCV---FFGKEKSNDVILSHLITFLNDKDWRLRGAFFD 639 (1431)
T ss_pred --cccchHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHH---HhhhcccccchHHHHHHHhcCccHHHHHHHHh
Confidence 0111111122222222222233444 34556664445444433 122222222 4456778889999999999999
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC--cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCch
Q 000196 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE--RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE 381 (1874)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~--R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~ 381 (1874)
.|+-+|.|-+..-++.| ++|+|.+.|.+.++ -..|+.|+.-+... |---++++-+|++.+...|..++.=.+..
T Consensus 640 sI~gvsi~VG~rs~sey---llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~ 715 (1431)
T KOG1240|consen 640 SIVGVSIFVGWRSVSEY---LLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRA 715 (1431)
T ss_pred hccceEEEEeeeeHHHH---HHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHH
Confidence 99999888776545545 78888888877654 24566666665532 21123666666666665554332222346
Q ss_pred hHHHHHHHHHHhCC
Q 000196 382 ALACVGNIARAMGP 395 (1874)
Q Consensus 382 a~~~l~~l~~~~g~ 395 (1874)
++..+..+++.++.
T Consensus 716 ~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 716 VLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHHHHHHhhhhh
Confidence 67777777776664
No 86
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.52 E-value=0.29 Score=70.36 Aligned_cols=386 Identities=19% Similarity=0.173 Sum_probs=204.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhhhhh---------
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELDVQL--------- 1359 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~~~~--------- 1359 (1874)
..+......+.|..|+.+++...... ++..+..-.|..+|.+.|+.+.+...++.+.. ..+...
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 34667777888999998888776532 34456777899999999999999888875432 111100
Q ss_pred ---------cHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHH
Q 000196 1360 ---------KESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMA 1430 (1874)
Q Consensus 1360 ---------~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~ 1430 (1874)
...-+.+.|++++|...|++.+...++. .....++-.++.+.|+|+.-....+..... ++.... +
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~-~p~~~~--a 421 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD---SYAVLGLGDVAMARKDYAAAERYYQQALRM-DPGNTN--A 421 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH--H
Confidence 0112457899999999999988765432 345667778899999998776665543211 111100 0
Q ss_pred HHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhh
Q 000196 1431 PMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSE 1510 (1874)
Q Consensus 1431 ~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~E 1510 (1874)
.......+..++++....++..++... .+++.. +.+.+ ....+..
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~----------------------~~~~~~---------~~~~l----~~~~~~~ 466 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQ----------------------RRSIDD---------IERSL----QNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHH----------------------HHHHHH---------HHHHh----hhhHHHH
Confidence 111111233345555444444332100 000000 00000 0000000
Q ss_pred HHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHH
Q 000196 1511 LEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARS 1590 (1874)
Q Consensus 1511 leEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~ 1590 (1874)
+-++ +... + +.+.-...+ +..+ -+.| ++...+...+.+..+.|+++.|..
T Consensus 467 ~a~~--~~~~--g------~~~eA~~~~--------------~~Al-----~~~P-~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 467 QAEA--LENQ--G------KWAQAAELQ--------------RQRL-----ALDP-GSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHH--HHHC--C------CHHHHHHHH--------------HHHH-----HhCC-CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 0000 0000 0 000000111 1111 1122 235566677777777777777777
Q ss_pred HHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC--------c-----------
Q 000196 1591 TLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP--------V----------- 1651 (1874)
Q Consensus 1591 ~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~--------~----------- 1651 (1874)
.+.++....|. .+...+..+.++...|+ ..+|+..++.+...-.... .
T Consensus 517 ~l~~al~~~P~----------~~~~~~a~al~l~~~~~---~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 517 LMRRLAQQKPN----------DPEQVYAYGLYLSGSDR---DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHHHHcCCC----------CHHHHHHHHHHHHhCCC---HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 77776654432 34555666666655553 4566666554321000000 0
Q ss_pred -cccc--cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1652 -IQSA--ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1652 -~~~~--~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
..+. .-..... ...-....++.+|.|..+. ...++.+..|+++++.+|++..+|..+|......
T Consensus 584 ~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~------g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~--- 650 (1157)
T PRK11447 584 RDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQR------GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ--- 650 (1157)
T ss_pred HHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---
Confidence 0000 0000000 0001123466788887664 4689999999999999999999999998764431
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1874)
+ -...|++.|-+.+... ........++-.+|..-|...+..+.+++.+..
T Consensus 651 ----g-------~~~eA~~~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 651 ----G-------DLAAARAQLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred ----C-------CHHHHHHHHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 1 2236677776666543 223344556677888888887777666666544
No 87
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.046 Score=69.37 Aligned_cols=159 Identities=19% Similarity=0.232 Sum_probs=108.0
Q ss_pred ccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHH
Q 000196 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1874)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1874)
.++..+-..|.+.+...+.++.....-|..+..+-.+++..+..-.+.++..++..-..=- ...++....++...+
T Consensus 458 ~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~----S~~n~ql~~Tss~~i 533 (982)
T KOG2022|consen 458 GLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL----SAPNPQLLSTSSDLI 533 (982)
T ss_pred HHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc----ccCChhHHHHHHHHH
Confidence 3445555556666655443322233345566778888988887777776666554433211 113677888888999
Q ss_pred HHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCC-CCHHHH
Q 000196 713 GDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTR 791 (1874)
Q Consensus 713 ~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~-~~~~vr 791 (1874)
|.++...++. .-|+...+|.+++.|... +.-..|+.+|.++|+.+...+.||.+ +++..+-..+.+. .....|
T Consensus 534 gs~s~~l~e~-P~~ln~sl~~L~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d--~~~a~~~e~l~~~~~~~S~~ 607 (982)
T KOG2022|consen 534 GSLSNWLGEH-PMYLNPSLPLLFQGLHNS---KESEQAISTLKTLCETCPESLDPYAD--QFSAVCYEVLNKSNAKDSDR 607 (982)
T ss_pred HHHHHHHhcC-CcccCchHHHHHHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH--HHHHHHHHHhcccccCchHH
Confidence 9998876653 236677788888888632 34557888899999999999999986 6788887777433 245788
Q ss_pred HHHHHHHHHh
Q 000196 792 REVLKVLGIM 801 (1874)
Q Consensus 792 ~~al~~lg~l 801 (1874)
...++++|-+
T Consensus 608 ~klm~sIGyv 617 (982)
T KOG2022|consen 608 LKLMKSIGYV 617 (982)
T ss_pred HHHHHHHHHH
Confidence 8888998875
No 88
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.043 Score=67.28 Aligned_cols=103 Identities=22% Similarity=0.165 Sum_probs=77.6
Q ss_pred HHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc------
Q 000196 115 MRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF------ 188 (1874)
Q Consensus 115 L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~------ 188 (1874)
|-.+.. +.|..|+..|.+++=.|.+ |.. +-....+++.+.+. |..+..|.||+.++...+..+|...
T Consensus 203 l~~~~~-~~D~~Vrt~A~eglL~L~e--g~k---L~~~~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEH-DQDFRVRTHAVEGLLALSE--GFK---LSKACYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhc-CCCcchHHHHHHHHHhhcc--ccc---ccHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 444453 6799999999998877665 222 22345677777774 5566789999999998888875321
Q ss_pred hhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 000196 189 NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRV 224 (1874)
Q Consensus 189 ~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~ 224 (1874)
.......|..|..+++|-+-.||.-|+++||.+-.+
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 247788899999999999999999999999976543
No 89
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.38 E-value=0.95 Score=58.43 Aligned_cols=151 Identities=21% Similarity=0.253 Sum_probs=105.7
Q ss_pred CCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHH
Q 000196 895 PYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQL 973 (1874)
Q Consensus 895 ~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l 973 (1874)
.|+..|+|.+.+.+.+.+...|..++..|+.++..+ ++.+.|.++.+++++.+.+.-.+. ..+...++++..+
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~------~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDV------IVRVSTLRTIPML 936 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCcc------chhhhHhhhhhHH
Confidence 477899999999999777778999999999888866 567789999999999998876541 1112333333333
Q ss_pred HHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCC--cHHHHHHHHH
Q 000196 974 CLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDA--PVDIRRAAIE 1051 (1874)
Q Consensus 974 ~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~--~~~vr~~ai~ 1051 (1874)
..-.+.-.. +|+..++|.++.+=..+. +..||..|++
T Consensus 937 l~~~~tL~t-----------------------------------------~~~~Tlvp~lLsls~~~~n~~~~VR~~ALq 975 (1030)
T KOG1967|consen 937 LTESETLQT-----------------------------------------EHLSTLVPYLLSLSSDNDNNMMVVREDALQ 975 (1030)
T ss_pred HHhccccch-----------------------------------------HHHhHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 333333333 444444555544433221 4678899999
Q ss_pred HHHhhccc---ccccchhHhHHHHHHHHhCCCCHHHHHHHHHHH
Q 000196 1052 TLTRLIPR---VQVTGHISSLVHHLKLVLDGKNDELRKDAVDAL 1092 (1874)
Q Consensus 1052 ~l~~l~~~---~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L 1092 (1874)
+++.|.+. -.+.+|-+.++..|+..|+++-.-+|+.|.++=
T Consensus 976 cL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 976 CLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 99888774 446788889999999999877677888888763
No 90
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.28 E-value=1.5 Score=58.63 Aligned_cols=135 Identities=16% Similarity=0.160 Sum_probs=99.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|+.++.+....|+++.|...+.++...+|. .+.+.+..+.+.+..|+ ..+|+..+++.+...
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE----------DPDIYYHRAQLHFIKGE---FAQAGKDYQKSIDLD 429 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC
Confidence 45789999999999999999999999998877552 46788889999999995 688999988866421
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. ....+..+|.-...+ ...++.+..|..+++.+|+...+|..+|......
T Consensus 430 P~----------------------~~~~~~~la~~~~~~------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~- 480 (615)
T TIGR00990 430 PD----------------------FIFSHIQLGVTQYKE------GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ- 480 (615)
T ss_pred cc----------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-
Confidence 10 011233333333322 3467889999999999999999998888764431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.-...|++.|-+++.+.
T Consensus 481 -------------g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 481 -------------NKFDEAIEKFDTAIELE 497 (615)
T ss_pred -------------cCHHHHHHHHHHHHhcC
Confidence 12357899999999875
No 91
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.014 Score=66.04 Aligned_cols=194 Identities=11% Similarity=0.088 Sum_probs=100.8
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc-cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
.+.+..+++..+..++.++...+|.++-.+... +...+.- +..++.++..+ ....+-.+..++-.++.....-.+-
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~G-l~~Li~qmmtd--~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLG-LDLLILQMMTD--GVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccC-hHHHHHHhcCC--CcEEEeeehhhhhhhhccccchhhh
Confidence 444455666777889999999999888766432 1111111 11222333222 2344555666666666432111111
Q ss_pred chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
--..-+.++.. +... .+-.++.++..++-.|...-.. ...+ .--+|.+++.+... +..+|.-+..+++.+
T Consensus 164 A~sGaL~pltr-Laks----kdirvqrnatgaLlnmThs~En--Rr~LV~aG~lpvLVsll~s~-d~dvqyycttaisnI 235 (550)
T KOG4224|consen 164 ARSGALEPLTR-LAKS----KDIRVQRNATGALLNMTHSREN--RRVLVHAGGLPVLVSLLKSG-DLDVQYYCTTAISNI 235 (550)
T ss_pred hhccchhhhHh-hccc----chhhHHHHHHHHHHHhhhhhhh--hhhhhccCCchhhhhhhccC-ChhHHHHHHHHhhhh
Confidence 00111222333 2221 2455666665555444321110 0000 12367788877754 567787777777766
Q ss_pred Hhhcccc-ccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCcc
Q 000196 758 VQSTGYV-ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPH 807 (1874)
Q Consensus 758 ~~~~~~~-i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~ 807 (1874)
+-..... +-. ..-|.+++.|+.++.+. +++++-.|--+++.+.+-..|
T Consensus 236 aVd~~~Rk~La-qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 236 AVDRRARKILA-QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hhhHHHHHHHH-hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchh
Confidence 5332211 111 12378999999998765 678888877777777653333
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.21 E-value=0.14 Score=66.64 Aligned_cols=415 Identities=14% Similarity=0.126 Sum_probs=200.1
Q ss_pred CCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 143 GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
|+..-+.++++++|.-.|..+ +...+..++..|..-..| .......-..++..+..+| .|...|-.+.
T Consensus 210 G~l~m~iie~Elkr~~~w~~~----------l~~~~~~~~~~~~~~~~~-~~~~kk~~~l~~kQeqLlr-v~~~lLlNLA 277 (708)
T PF05804_consen 210 GSLCMEIIEHELKRHDLWQEE----------LRKKKKAAEEKPEAKKDY-EKELKKLQTLIRKQEQLLR-VAFYLLLNLA 277 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHhhhhhhccchhhhhhH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 444566677777777666431 111111233333221111 2222333344445555555 4455555544
Q ss_pred HHHhhcchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--hhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000196 223 RVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--GEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1874)
Q Consensus 223 ~~i~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--~~~~~~~~~~i~~~ll~~~~~~~~~vr~ 299 (1874)
+... ...... ..+++-+..-|.+.+ .+....++.+|.-|.-.. .+.|. -..+++.+.+.+.+++..++.
T Consensus 278 ed~~-----ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~ 349 (708)
T PF05804_consen 278 EDPR-----VELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVN 349 (708)
T ss_pred cChH-----HHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHH
Confidence 3322 111221 335555555565543 444444444444443210 11221 123677788888888889999
Q ss_pred HHHHHhHhHhhhCh--hhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhch-hhhhhhhHHHHHHHHHhhcC-CC
Q 000196 300 SITSLLPRIAHFLR--DRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALD-GELFHYLPTITSHLREAIAP-RR 375 (1874)
Q Consensus 300 ~~~~~i~~la~~~~--~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~-~~~~p~l~~i~~~l~~~L~~-~~ 375 (1874)
.++.++-.|+.... ..+++ ..++|.|...|.+++.|..++..|-+++..-. +.+..|-+ .++.+.+.+.. ..
T Consensus 350 ~aLrlL~NLSfd~~~R~~mV~---~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~Td-cIp~L~~~Ll~~~~ 425 (708)
T PF05804_consen 350 VALRLLFNLSFDPELRSQMVS---LGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAYTD-CIPQLMQMLLENSE 425 (708)
T ss_pred HHHHHHHHhCcCHHHHHHHHH---CCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhhcc-hHHHHHHHHHhCCC
Confidence 99999999885332 12221 34677788888877777778888887765322 12333333 34444444422 22
Q ss_pred CCCCchhHHHHHHHHHHhCCCchHHHH-HHHHHHHhc---CCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCC
Q 000196 376 GKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSA---GLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSH 451 (1874)
Q Consensus 376 ~~~~~~a~~~l~~l~~~~g~~~~p~l~-~ll~~ll~~---~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~ 451 (1874)
.+...+++..+-.++..- +...-..+ ..++.|+.. .-++-+...++.++.+-|+......+-+-+.+..+ .
T Consensus 426 ~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v-~--- 500 (708)
T PF05804_consen 426 EEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIV-S--- 500 (708)
T ss_pred ccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-h---
Confidence 222222222222222210 00000000 122333321 11333445666666654433322222222222111 0
Q ss_pred CCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccC---------CCcchhhHHHHHhhhccCCChHHHHHH
Q 000196 452 YSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFK---------GHDLLEFARDSVVLYLDDEDKATRKDA 522 (1874)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~---------~~~l~~~v~~~~~~~l~~~~~~VR~aA 522 (1874)
..++.+....++.+|+.+... .+.+.||+.+.+.+... ++++.-.+
T Consensus 501 -----------------------~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~--~dDl~LE~ 555 (708)
T PF05804_consen 501 -----------------------SGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS--EDDLLLEV 555 (708)
T ss_pred -----------------------cCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC--ChHHHHHH
Confidence 001223456677777766433 24566777777665544 34666666
Q ss_pred HHHhHHhhhccCCCCcccccccccccccccchhHHH--HHHHHHHHHH--HhcCCChhHHHHHHHhccC----CCCcchh
Q 000196 523 ALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIA--AVADADVTVRHSIFSSLYG----NRGFDDF 594 (1874)
Q Consensus 523 a~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~--~~~d~~~~vR~~~l~~l~~----~~~f~~~ 594 (1874)
+..++.+.. +.. ...++ ..++..|+.. +..| |.++...++-+|.. ....+..
T Consensus 556 Vi~~gtla~-d~~------------------~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~l 615 (708)
T PF05804_consen 556 VILLGTLAS-DPE------------------CAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVL 615 (708)
T ss_pred HHHHHHHHC-CHH------------------HHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHH
Confidence 766665542 111 01111 1222233222 1233 44444444444420 1111222
Q ss_pred hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCc
Q 000196 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNP 631 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p 631 (1874)
+.+.+.+..++..++|.+.+||..+-.+|.-++++.+
T Consensus 616 l~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 616 LKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 3445677888899999999999999999988888764
No 93
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.21 Score=61.58 Aligned_cols=183 Identities=16% Similarity=0.081 Sum_probs=121.2
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH--hhcchhhHHH
Q 000196 158 LDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI--EKRETRWRVQ 235 (1874)
Q Consensus 158 ~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i--~~r~~~~~~~ 235 (1874)
+-++-.+.+.+.|-+|+..+-+|.++. .+. ..+.......|+|.+..||.+|..++......- .........+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--ccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 444445666677888888888887741 111 123345568899999999999998876554332 1011123445
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHHH-------------H---------------
Q 000196 236 WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAEI-------------V--------------- 286 (1874)
Q Consensus 236 ~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~~-------------l--------------- 286 (1874)
.+...|..+++++.|- ++.+|--|..+||.+-..+.+++.+.+++ ++.. +
T Consensus 278 l~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hHHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 6777788888888776 47788778888888766666666665553 3321 1
Q ss_pred ----------------------HHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--CCcchHH
Q 000196 287 ----------------------LRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP--AERDSGF 342 (1874)
Q Consensus 287 ----------------------l~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--~~R~~a~ 342 (1874)
+..+++.=-.||++++..+..||...|. |. ...+.+|...+.++ ..|..|+
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-FA----~~aldfLvDMfNDE~~~VRL~ai 431 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-FA----VRALDFLVDMFNDEIEVVRLKAI 431 (823)
T ss_pred CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-cH----HHHHHHHHHHhccHHHHHHHHHH
Confidence 1111222356999999999999987765 43 45677777777654 3588899
Q ss_pred HHHHHHHhh
Q 000196 343 IALGEMAGA 351 (1874)
Q Consensus 343 ~alg~la~~ 351 (1874)
.+|..|+..
T Consensus 432 ~aL~~Is~~ 440 (823)
T KOG2259|consen 432 FALTMISVH 440 (823)
T ss_pred HHHHHHHHH
Confidence 999888766
No 94
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.15 E-value=0.12 Score=60.81 Aligned_cols=328 Identities=15% Similarity=0.122 Sum_probs=177.2
Q ss_pred CCCCCcHHHHHHHHHHHcCCCCchhh-HHHHHHHHHH------HHHhhhChHHHHHHHHHHH-------HH-HHhhhcCC
Q 000196 17 GAGGGSLDALNRILADLCTHGNPKEG-ASLALRKHIE------EQARDLGGEAFSRFMDQLY-------DR-ISGLLESN 81 (1874)
Q Consensus 17 ~~~~~~~~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~------~~~~~~~~~~~~~~~~~l~-------~~-i~~l~~s~ 81 (1874)
++.+++|.+| .-+||+++-.-+. |-.-+..+++ +++..+++.+|..|.--|. .- +.-+....
T Consensus 43 ~~~~g~p~l~---~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~ 119 (728)
T KOG4535|consen 43 TPELGSPSLM---TLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAES 119 (728)
T ss_pred CCCCCCceee---EEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666654 3467777543332 4333444443 3455566666655543332 22 22344444
Q ss_pred ChhhhhhHHHHHhHhhccc-cCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCc--------------
Q 000196 82 DAAENLGALRAIDELIDVA-LGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAM-------------- 145 (1874)
Q Consensus 82 ~~~~r~~~i~ai~~li~~~-~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~-------------- 145 (1874)
.+..-...+.++..|+.-. +.. ..+.+.+|.+.++..+. ..|+.|+-.+.-++|.|+.+....
T Consensus 120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~-~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~ 198 (728)
T KOG4535|consen 120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIR-HKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSS 198 (728)
T ss_pred CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhh-cCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccc
Confidence 4444555677777776543 222 24668889999999997 569999999999999887642211
Q ss_pred --------chHH-------------------------------------------HHHHHHHHHhhhcCCCcchhHHHHH
Q 000196 146 --------TADE-------------------------------------------VEFQVKMALDWLRGDRVEYRRFAAV 174 (1874)
Q Consensus 146 --------~~~~-------------------------------------------v~~~~~~~~~~l~~~~~~~~r~aA~ 174 (1874)
++|. .-..+.++.+... .....|..+.
T Consensus 199 n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~--~ps~~rle~~ 276 (728)
T KOG4535|consen 199 NSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTY--EPSPMRLEAL 276 (728)
T ss_pred cccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCcc--CCchhHHHHH
Confidence 1111 0111112222111 1235788899
Q ss_pred HHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh---hH-----HHHHHHHHHHH--
Q 000196 175 LILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR---WR-----VQWYYRMFEAT-- 244 (1874)
Q Consensus 175 ~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~---~~-----~~~~~~i~~~~-- 244 (1874)
++|..+|.+-+ ....|+.++...|..++.|+.|.+..-++..+..+..-..+++.. .. .-|....+..+
T Consensus 277 qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~ 355 (728)
T KOG4535|consen 277 QVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPR 355 (728)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChh
Confidence 99999888744 336788899999999999999999988888777665544322211 11 11211110000
Q ss_pred --HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHH-HHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH
Q 000196 245 --QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVA-EIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL 321 (1874)
Q Consensus 245 --~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~-~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl 321 (1874)
-++.... -..+.+.++..+.....+-+...-+..+ ..+.++-+|++..|+.+++.+++.+.-.-.-.....+.
T Consensus 356 ~~YDs~~~T----l~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv 431 (728)
T KOG4535|consen 356 ALYDSEHPT----LQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFV 431 (728)
T ss_pred hhhhhcCCC----chhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHH
Confidence 0011110 0223333333332211111111111122 23344446788889999988887654322211112234
Q ss_pred HHHHHHHHHhhcCC--CCcchHHHHHHHHHhhchhh
Q 000196 322 KICMNHILTVLRIP--AERDSGFIALGEMAGALDGE 355 (1874)
Q Consensus 322 ~~~~~~Ll~~L~~~--~~R~~a~~alg~la~~v~~~ 355 (1874)
......++..|.+. ..|.+++-++|+|..++-..
T Consensus 432 ~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~ 467 (728)
T KOG4535|consen 432 ADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVN 467 (728)
T ss_pred HHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcC
Confidence 44555555555432 35889999999998876543
No 95
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.25 Score=59.29 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=117.2
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccch--hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 000196 164 DRVEYRRFAAVLILKEMAENASTVFN--VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1874)
Q Consensus 164 ~~~~~~r~aA~~~l~~la~~~p~~~~--~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~ 241 (1874)
+..|+.|....-++.++.. |..+- +.+..++-.+..-.+||+..+|..|+..|+...+. .+.....+++.++
T Consensus 228 s~~~~~ritd~Af~ael~~--~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~----~P~kv~th~~~~l 301 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKR--PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG----APDKVRTHKTTQL 301 (533)
T ss_pred hhcccchHHHHHHHHHHhC--cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc----CcHHHHHhHHHHH
Confidence 4557788887767666543 33333 67888888888899999999999999988876543 3445567788999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000196 242 EATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
+.+..||-++.+.++.+-++.+|..+++ ..+..+.+++-++...+-.+.++.++.+|.++..+++.|+.+++..
T Consensus 302 daii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 302 DAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC
Confidence 9999999887778899999999998888 4556677888888888888889999999999999999999988743
No 96
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.13 E-value=0.012 Score=69.52 Aligned_cols=196 Identities=18% Similarity=0.208 Sum_probs=131.1
Q ss_pred HHHhhcCC-chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000196 199 IWVALRDP-TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1874)
Q Consensus 199 i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1874)
.+..+++. ...-|+.| +.++...+...+-..=.+++..++..+..-|++..+.-.+.-|+-+|+++++..+.-+..
T Consensus 291 ~l~~~~g~e~a~~~k~a---lsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 291 LLKEISGSERASERKEA---LSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHhccCccchhHHHHH---HHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 44555544 33334443 344444443221112346688888888888887544445777888999999977666666
Q ss_pred HHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcc-hHHHHHHHHHhhchh-
Q 000196 278 RYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERD-SGFIALGEMAGALDG- 354 (1874)
Q Consensus 278 ~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~-~a~~alg~la~~v~~- 354 (1874)
+-+.....++..- +..+..++.++=.++-.++.+.|..-+. .+.+.+++ ....|. +++.++..+.+.+..
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~----~i~~~Ilt---~D~~~~~~~iKm~Tkl~e~l~~E 440 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV----NISPLILT---ADEPRAVAVIKMLTKLFERLSAE 440 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH----HHhhHHhc---CcchHHHHHHHHHHHHHhhcCHH
Confidence 6665555566554 4456677888777788888888864332 23333333 222344 555577888777765
Q ss_pred hhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhC-CCchHHHHHH
Q 000196 355 ELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG-PVMEPHVRGL 404 (1874)
Q Consensus 355 ~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g-~~~~p~l~~l 404 (1874)
++-+.+++|++.+.++.......++-.++-|+-.+...+| +.|.||+..+
T Consensus 441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 4668889999999999977666677789999999999999 7899999765
No 97
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.0077 Score=75.76 Aligned_cols=223 Identities=19% Similarity=0.220 Sum_probs=162.3
Q ss_pred hcCCChhHHHHHHHhccC--CCCcc-hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYG--NRGFD-DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~--~~~f~-~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l 646 (1874)
.-||.+-+|...+..+.. ..+.. +......++......+.|++.=|--.|++.+..|++..|..++|.+-. ++.
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~e---~Y~ 812 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLSE---EYL 812 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHHH---HHH
Confidence 468888999988887741 01111 112223466777778889988888889998888888888877665543 222
Q ss_pred HHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhc
Q 000196 647 TYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726 (1874)
Q Consensus 647 ~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~ 726 (1874)
.. +.- ..++.|-...++++.++.+.|+.+..|...++..++...+++ +...+..++..+|.+.+........+
T Consensus 813 s~-k~k-~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep-----d~~~RaSS~a~lg~Lcq~~a~~vsd~ 885 (982)
T KOG4653|consen 813 SE-KKK-LQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP-----DHEFRASSLANLGQLCQLLAFQVSDF 885 (982)
T ss_pred hc-ccC-CCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc-----hHHHHHhHHHHHHHHHHHHhhhhhHH
Confidence 21 111 123445556689999999999999999999999999999864 56667777888899888766666668
Q ss_pred HHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccc--cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 727 ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYN--EYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 727 ~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~--~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+.+++..++...+...+.-+|.+|+..+..+..++|....|.. ..-++...+....+.+.+..+|..+..|+-.+-
T Consensus 886 ~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 886 FHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 8888888888877555788999999999999999998776643 122456666677777767788888888876553
No 98
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.11 E-value=0.07 Score=66.24 Aligned_cols=258 Identities=14% Similarity=0.216 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhc-----CCcchhHHHHHHHHHHHHH
Q 000196 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRT-----CDDYLKDYITWKLGTLVSI 929 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~-----~~~~~~~~~~~~l~~lv~~ 929 (1874)
...++..|..+++-+.- .....+..|+|.++...+..+.|+.+.+++.+...+.. ++|..-.++|..+|.+++.
T Consensus 24 ~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~ 102 (435)
T PF03378_consen 24 AQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRF 102 (435)
T ss_dssp HHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHh
Confidence 35677778888854322 33457899999999999999999999999988876642 2455677889999999987
Q ss_pred HH----HhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh-hhhhccchhhHHHHHHhcccccccCc
Q 000196 930 VR----QHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN-DEFRTHLPVILPCCIQVLSDAERCND 1004 (1874)
Q Consensus 930 ~~----~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~-~~f~~yl~~llp~ll~~l~~~~~~~~ 1004 (1874)
+. ..+..+-+.+++.+...++..-. .-...++++++.+..... +.+.+....++|.++.---- ++...
T Consensus 103 ~~~~~~~~v~~~E~~L~P~f~~ILq~dV~------EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lW-e~~gn 175 (435)
T PF03378_consen 103 VCEADPEAVSQFEEALFPPFQEILQQDVQ------EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALW-ERRGN 175 (435)
T ss_dssp S-GGGHH---HHHHHHHHHHHHHHHTT-T------TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGG-GSTTT
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchh-ccCCC
Confidence 64 23557888888888888775421 123367778777766665 56666667777776643221 12223
Q ss_pred hhhHHHHHHHHHHHhcch---hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc---cccchhHhHHHHHHHHhC
Q 000196 1005 YTYVLDILHTLEVFGGTL---DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV---QVTGHISSLVHHLKLVLD 1078 (1874)
Q Consensus 1005 ~~~~~~il~~l~~~g~~~---~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~---~~~~~~~~ii~~l~~~l~ 1078 (1874)
.....+.++++..-++.. ..++..++..+.+++.....+ ..+.+.|..+.... .+.+|+..|+..+..=|.
T Consensus 176 iPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D---~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq 252 (435)
T PF03378_consen 176 IPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND---HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQ 252 (435)
T ss_dssp HHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH---HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHh
Confidence 445667888886654432 367777888887887543223 45666666665553 367899999988776665
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHhCCCCchhHHHHHHHH
Q 000196 1079 -GKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRL 1131 (1874)
Q Consensus 1079 -~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~~~~~~~~~~~~~~~~ 1131 (1874)
++.....+..+-.++.++...|.++ +...+. +++..-|..+..++
T Consensus 253 ~skT~kf~~~fv~F~~~~~~~~g~~~------li~~id--~IQ~glF~~il~~v 298 (435)
T PF03378_consen 253 SSKTEKFVKRFVVFLSLFAIKYGPDF------LIQTID--SIQPGLFGMILEKV 298 (435)
T ss_dssp HC--HHHHHHHHHHHHHHHHHH-HHH------HHHHHH--TTSTTHHHHHHHHT
T ss_pred hCCcHHHHHHHHHHHHHHHHHcCHHH------HHHHHH--HhcCCcHHHHHHHH
Confidence 3445677777777888888887765 333332 24555566555543
No 99
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.10 E-value=0.003 Score=70.56 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=127.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH------HHHHHHHhhCCCChHhHHHHHHHHHHHHHh
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQSSADNKCREESAKLLGCLIRN 672 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~ 672 (1874)
..++.+.+.|.+.+.+||+.++++||.++-..+.+ |.++ ..+|.-+..+..+...-..+.|.|+.+++.
T Consensus 157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~-----RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC-----RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred CchHHHHHHHcCchHHHHHHHHHHhccccCCchhH-----HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 45788888999999999999999999998876543 3332 223333333312234456889999999975
Q ss_pred -CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH-hHHHHHHHHHhcCcchhhHHHH
Q 000196 673 -CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALLDGAAVTKREVA 750 (1874)
Q Consensus 673 -~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~llp~l~~~l~d~~~~~~r~~A 750 (1874)
.|+.-..-+...++.|.+.+-.. ++.+...++.+|+.|+....+.+...++ .+.+-+++.|... +.....-|
T Consensus 232 knP~P~w~~isqalpiL~KLiys~-----D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPa 305 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSR-----DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPA 305 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhc-----CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHH
Confidence 34333344556667776666553 7888889999999987654444444343 3456677777754 45567788
Q ss_pred HHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 751 VSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 751 ~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+..+|.++.+....-.. ...-..++.+..+|.+.. ..+|.+++++++-+.
T Consensus 306 lR~vGNIVTG~D~QTqv-iI~~G~L~a~~~lLs~~k-e~irKEaCWTiSNIT 355 (526)
T COG5064 306 LRSVGNIVTGSDDQTQV-IINCGALKAFRSLLSSPK-ENIRKEACWTISNIT 355 (526)
T ss_pred HHhhcCeeecCccceeh-heecccHHHHHHHhcChh-hhhhhhhheeecccc
Confidence 99999998766543111 112346777777776653 489999988876553
No 100
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.038 Score=69.68 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=39.8
Q ss_pred chhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhc
Q 000196 479 SAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1874)
Q Consensus 479 ~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1874)
......|++++|+..+. .+.++..+.+...+.|.++.||+.|+.++.++...
T Consensus 100 p~iR~lAlrtm~~l~v~--~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~ 151 (734)
T KOG1061|consen 100 PLIRALALRTMGCLRVD--KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI 151 (734)
T ss_pred HHHHHHHhhceeeEeeh--HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcC
Confidence 34568899999998663 34466677777788889999999999888887653
No 101
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.05 E-value=0.084 Score=64.96 Aligned_cols=214 Identities=18% Similarity=0.076 Sum_probs=136.6
Q ss_pred HHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHH
Q 000196 504 RDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFS 583 (1874)
Q Consensus 504 ~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~ 583 (1874)
-+.+...+++++++||.+++.+++++-.. .... .|+ ..+.++++.||..++.
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-----------------------~a~~----~L~-~~L~~~~p~vR~aal~ 139 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR-----------------------QAEP----WLE-PLLAASEPPGRAIGLA 139 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCch-----------------------HHHH----HHH-HHhcCCChHHHHHHHH
Confidence 44556778888899999999988765311 1122 222 2357899999999998
Q ss_pred hccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHH
Q 000196 584 SLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1874)
Q Consensus 584 ~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1874)
+++.. . .+-.+.+..+++|+++.||..|+.++|.+.... ..|.+... + .+ .++..|..|+
T Consensus 140 al~~r-~-------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~---a~~~L~~a-------l-~d-~~~~VR~aA~ 199 (410)
T TIGR02270 140 ALGAH-R-------HDPGPALEAALTHEDALVRAAALRALGELPRRL---SESTLRLY-------L-RD-SDPEVRFAAL 199 (410)
T ss_pred HHHhh-c-------cChHHHHHHHhcCCCHHHHHHHHHHHHhhcccc---chHHHHHH-------H-cC-CCHHHHHHHH
Confidence 88521 1 122556777889999999999999999887643 23433321 2 33 5788899988
Q ss_pred HHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcc
Q 000196 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAA 743 (1874)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~ 743 (1874)
..++.+-. + .-...++....+. .......+...++. +|. +..++.+...+++.
T Consensus 200 ~al~~lG~--~--------~A~~~l~~~~~~~-----g~~~~~~l~~~lal----~~~------~~a~~~L~~ll~d~-- 252 (410)
T TIGR02270 200 EAGLLAGS--R--------LAWGVCRRFQVLE-----GGPHRQRLLVLLAV----AGG------PDAQAWLRELLQAA-- 252 (410)
T ss_pred HHHHHcCC--H--------hHHHHHHHHHhcc-----CccHHHHHHHHHHh----CCc------hhHHHHHHHHhcCh--
Confidence 88866522 1 1223344423322 22222222222211 122 26777788888764
Q ss_pred hhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccc
Q 000196 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1874)
Q Consensus 744 ~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~ 808 (1874)
.+|..++.++|.+ | .|..++.|+..+.++ .+|+.+-..+..|..+|...
T Consensus 253 -~vr~~a~~AlG~l----g--------~p~av~~L~~~l~d~---~~aR~A~eA~~~ItG~~l~~ 301 (410)
T TIGR02270 253 -ATRREALRAVGLV----G--------DVEAAPWCLEAMREP---PWARLAGEAFSLITGMDVAL 301 (410)
T ss_pred -hhHHHHHHHHHHc----C--------CcchHHHHHHHhcCc---HHHHHHHHHHHHhhCCCcch
Confidence 3899999999975 2 256788888888654 48999999998876666553
No 102
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.01 E-value=0.00047 Score=58.64 Aligned_cols=55 Identities=24% Similarity=0.324 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 702 NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 702 ~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
+.++.+++.+||.++...++.+.+|+++++|.++..|+|.+ ..+|.+|+++||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~-~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD-DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHhcC
Confidence 45788899999999988899999999999999999999874 58999999999964
No 103
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.96 E-value=0.41 Score=58.56 Aligned_cols=153 Identities=16% Similarity=0.243 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHH-HHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAY-LKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~-~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
.+..-.++++-|..|+++.|.+.-.+++...|... ..+.. +-++=.+| +-.+|+...++.+.-
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a-----------aa~nNLa~i~kqqg---nl~~Ai~~YkealrI-- 417 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA-----------AAHNNLASIYKQQG---NLDDAIMCYKEALRI-- 417 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh-----------hhhhhHHHHHHhcc---cHHHHHHHHHHHHhc--
Confidence 66777889999999999999988877777655321 11122 23333445 357888888875431
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
+...|..|.-+|.=.-++ ...+..++.|.+|++++|....|+..+|..
T Consensus 418 --------------------~P~fAda~~NmGnt~ke~------g~v~~A~q~y~rAI~~nPt~AeAhsNLasi------ 465 (966)
T KOG4626|consen 418 --------------------KPTFADALSNMGNTYKEM------GDVSAAIQCYTRAIQINPTFAEAHSNLASI------ 465 (966)
T ss_pred --------------------CchHHHHHHhcchHHHHh------hhHHHHHHHHHHHHhcCcHHHHHHhhHHHH------
Confidence 245777887788766555 356889999999999999998888887754
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHh---HHHHHHHHHhcC
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQD---ILRLLTLWFNHG 1780 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~---~~RlLtLwf~~g 1780 (1874)
+++. -.+..||..|-.++.+.+. ..+..+. .++.+-=|.++.
T Consensus 466 -~kDs-------Gni~~AI~sY~~aLklkPD---fpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 466 -YKDS-------GNIPEAIQSYRTALKLKPD---FPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred -hhcc-------CCcHHHHHHHHHHHccCCC---CchhhhHHHHHHHHHhcccchH
Confidence 3222 3677899999999998542 2233333 344444455553
No 104
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.96 E-value=1.6 Score=53.10 Aligned_cols=164 Identities=20% Similarity=0.196 Sum_probs=93.0
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC-CCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHH
Q 000196 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND-EDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL 649 (1874)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D-~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l 649 (1874)
+|.=.-|-..++++|. -.|-. .+-.++.+|...|.+ ..++-+..+++++.++.++.|..=-..|. .|..++...
T Consensus 388 SD~FKiI~ida~rsLs--l~Fp~--k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe-~LC~fIEDc 462 (898)
T COG5240 388 SDGFKIIAIDALRSLS--LLFPS--KKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALE-VLCTFIEDC 462 (898)
T ss_pred ccCceEEeHHHHHHHH--hhCcH--HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHH-HHHHHHhhc
Confidence 4444445555566553 22211 112355666554444 46778888888888888777643111111 122222222
Q ss_pred hhCCCChHhHHHHHHHHHHHHHhCcccccc--chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH
Q 000196 650 EQSSADNKCREESAKLLGCLIRNCERLIRP--YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1874)
Q Consensus 650 ~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p--y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1874)
++ -+.+.+.|+-+.+..|..-.| |+..|.+.++- + +.-|+++++.|+...+-...+.+.+
T Consensus 463 ey-------~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iL---E------N~ivRsaAv~aLskf~ln~~d~~~~-- 524 (898)
T COG5240 463 EY-------HQITVRILGILGREGPRAKTPGKYVRHIYNRLIL---E------NNIVRSAAVQALSKFALNISDVVSP-- 524 (898)
T ss_pred ch-------hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHH---h------hhHHHHHHHHHHHHhccCccccccH--
Confidence 22 234666777777666554444 55555544432 1 5678889999988777655544333
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
..+..++..++.|+ +.++|+.|...|-.+-
T Consensus 525 ~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 525 QSVENALKRCLNDQ-DDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHhhcc-cHHHHHHHHHHHHhhh
Confidence 34556667788887 6789999987776653
No 105
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.95 E-value=0.033 Score=65.97 Aligned_cols=157 Identities=13% Similarity=0.086 Sum_probs=113.8
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhH-HHHHHHHHHH
Q 000196 142 GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAV-RERAVEALRA 220 (1874)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~V-R~aA~~al~~ 220 (1874)
+-+.|.+++..++..++|.|.+..++..|.-|+.+|++++++-|.-|+.+..-.+..++.+-.|++..| |.|+.+|+..
T Consensus 319 sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~ 398 (516)
T KOG2956|consen 319 SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTT 398 (516)
T ss_pred chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 345688899999999999998778888999999999999999999999999999999999999998765 5555555554
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH-cchhhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000196 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR-NTGEFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1874)
Q Consensus 221 ~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~-~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~ 299 (1874)
+.++... +.+..+.+.++. . |....-+++.++..+.+ ...|.+.+-+.++.+.++...++.+..||+
T Consensus 399 las~~P~-------~~I~~i~~~Ilt----~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRK 466 (516)
T KOG2956|consen 399 LASHLPL-------QCIVNISPLILT----A-DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRK 466 (516)
T ss_pred HHhhCch-------hHHHHHhhHHhc----C-cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhh
Confidence 4433221 123333333333 2 22223344446777766 455777788888999999989999999999
Q ss_pred HHHHHhHhHhh
Q 000196 300 SITSLLPRIAH 310 (1874)
Q Consensus 300 ~~~~~i~~la~ 310 (1874)
+++-++-.+..
T Consensus 467 taVfCLVamv~ 477 (516)
T KOG2956|consen 467 TAVFCLVAMVN 477 (516)
T ss_pred hHHHhHHHHHH
Confidence 88766655443
No 106
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.08 Score=67.11 Aligned_cols=219 Identities=14% Similarity=0.153 Sum_probs=144.4
Q ss_pred HhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHH
Q 000196 75 SGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQV 154 (1874)
Q Consensus 75 ~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~ 154 (1874)
...++++.+..|-+|+.-+..+++-.....-.+..+........+. ..|.=|.-.|-+.+..|+.. ... ..+
T Consensus 733 i~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk-dedsyvyLnaI~gv~~Lcev---y~e----~il 804 (982)
T KOG4653|consen 733 ISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK-DEDSYVYLNAIRGVVSLCEV---YPE----DIL 804 (982)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc-ccCceeeHHHHHHHHHHHHh---cch----hhH
Confidence 3456778899999999999999985422222222333344444443 45666666777777777775 222 224
Q ss_pred HHHHh-hhcCC----CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc
Q 000196 155 KMALD-WLRGD----RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 155 ~~~~~-~l~~~----~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
+...+ |..+. .+...|.+ .++..++..-+..+..|...++...+.++|||+..-|-.++..+|+++....-+-
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v 882 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV 882 (982)
T ss_pred HHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence 44444 33321 12334444 7778888888999999999999999999999999999999999999998766322
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH----HHHHHHHHh-hcchhHHHHHHHHH
Q 000196 230 TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE----VAEIVLRYL-EHRDRLVRLSITSL 304 (1874)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~----i~~~ll~~~-~~~~~~vr~~~~~~ 304 (1874)
..|+..++..+..-..-.+..-+|.+|+.++..++.+.|+-+.|-++. ....+..+. .+++..+|..++.+
T Consensus 883 ----sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 883 ----SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred ----hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 236666666555544333346789999999999999999877774433 333444433 34555566655544
Q ss_pred hHh
Q 000196 305 LPR 307 (1874)
Q Consensus 305 i~~ 307 (1874)
+..
T Consensus 959 lee 961 (982)
T KOG4653|consen 959 LEE 961 (982)
T ss_pred HHH
Confidence 443
No 107
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.91 E-value=0.024 Score=74.38 Aligned_cols=194 Identities=14% Similarity=0.162 Sum_probs=145.6
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcch
Q 000196 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1874)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~ 147 (1874)
.+...+..-+.+++|.+|..|+-.+...++-..++ ..+...-+.-++...+- +.+..|...|+.++..|+..-+....
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~k-DaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLK-DANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHhcchhhH
Confidence 34444556677899999999999999887665312 23333434445555553 45678999999999999998666666
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh
Q 000196 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1874)
.|+...++.+++.+. ++....|.+++-++..++. ...+..+.+.|..++++.+|.+|......+..++..+..
T Consensus 332 ~~~~~v~p~lld~lk-ekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLK-EKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHhhcchHHHHhh-hccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 677777777777775 4555789999999988887 346678899999999999999999999999988876542
Q ss_pred cchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000196 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1874)
Q Consensus 228 r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1874)
......-...+.+.+..+..|.+ .++|.+|..+++.+.++.|+
T Consensus 405 --~~~~~~t~~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 405 --KTVEKETVKTLVPHLIKHINDTD-KDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred --cCcchhhHHHHhHHHhhhccCCc-HHHHHHHHHHHHHHHHHhhH
Confidence 11233456778888888887774 78999999999999887665
No 108
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.87 E-value=0.047 Score=70.96 Aligned_cols=366 Identities=17% Similarity=0.153 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhccc--chhhcHHhHHHHHHHHH
Q 000196 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF--GMRQYISELMPLIVEAL 738 (1874)
Q Consensus 661 ~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~--~~~~~~~~llp~l~~~l 738 (1874)
.+..+|.++++...-..+-.-..++..|++.+... +..+...++..|..|+-.... .+. -..++|.+...+
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-----n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl 340 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-----NEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHh
Confidence 46677888887654333333345677777777653 556666666677666643221 221 235677788877
Q ss_pred hcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCC
Q 000196 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1874)
Q Consensus 739 ~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~ 818 (1874)
... +...+..|+..|..+....... +....-.+++.|..+|+++ ..+.-+++++..+..-|..+..
T Consensus 341 ~s~-~~~l~~~aLrlL~NLSfd~~~R--~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~-------- 406 (708)
T PF05804_consen 341 PSE-NEDLVNVALRLLFNLSFDPELR--SQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSM-------- 406 (708)
T ss_pred cCC-CHHHHHHHHHHHHHhCcCHHHH--HHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHH--------
Confidence 654 4567888888888876554332 1111123566677777654 3455566666555433322110
Q ss_pred cccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc-
Q 000196 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL- 897 (1874)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l- 897 (1874)
+ . | +-+++.|+++|-..+.......++..+.++...- ++..-+
T Consensus 407 -------------------------f---~-----~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~--rnaqlm~ 450 (708)
T PF05804_consen 407 -------------------------F---A-----Y-TDCIPQLMQMLLENSEEEVQLELIALLINLALNK--RNAQLMC 450 (708)
T ss_pred -------------------------H---h-----h-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH--HHHHHHH
Confidence 0 0 0 1123445554433222221112222222222110 000000
Q ss_pred -cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHH
Q 000196 898 -PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLA 976 (1874)
Q Consensus 898 -~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~ 976 (1874)
...++.++...-...+.+.-.++.+++.=-...+..+.+|+.+++..+.. .+. ....+.+++.++.-
T Consensus 451 ~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~----~~~--------ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 451 EGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSS----GDS--------EEFVVECLGILANL 518 (708)
T ss_pred hcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhc----CCc--------HHHHHHHHHHHHhc
Confidence 12234443322222221111122222211112234466777777766543 110 11456666665543
Q ss_pred h--hhhhhccch--hhHHHHHHhcccccccCchhhHHHHHHHHHHHhc--chhhhh--hhhHHHHHHhhcC-CCcHHHHH
Q 000196 977 L--NDEFRTHLP--VILPCCIQVLSDAERCNDYTYVLDILHTLEVFGG--TLDEHM--HLLLPALIRLFKV-DAPVDIRR 1047 (1874)
Q Consensus 977 l--~~~f~~yl~--~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~--~~~~~~--~~ilp~l~~~~~~-~~~~~vr~ 1047 (1874)
- +.++..++. .++|.+.+.|.... +.+ ...+.++-.+.+++. .....+ ..+++.++.++.. ..+.+.-.
T Consensus 519 ~~~~ld~~~ll~~~~llp~L~~~L~~g~-~~d-Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl 596 (708)
T PF05804_consen 519 TIPDLDWAQLLQEYNLLPWLKDLLKPGA-SED-DLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVL 596 (708)
T ss_pred ccCCcCHHHHHHhCCHHHHHHHHhCCCC-CCh-HHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence 2 335555654 68888888886432 222 222222222222211 111222 2468888888853 24677778
Q ss_pred HHHHHHHhhcccccccchh---HhHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000196 1048 AAIETLTRLIPRVQVTGHI---SSLVHHLKLVLDGKNDELRKDAVDALCCLAH 1097 (1874)
Q Consensus 1048 ~ai~~l~~l~~~~~~~~~~---~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~ 1097 (1874)
..+-++..+.......+++ +.+..-++..+++.|+++|+.+=.+|-.++.
T Consensus 597 Qil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 597 QILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8888888887763322222 3567778899999999999887777765543
No 109
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.85 E-value=0.059 Score=66.24 Aligned_cols=179 Identities=18% Similarity=0.162 Sum_probs=113.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHH
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1874)
+..|+. +..|+++.||..+.++|+.- ..+.....|...+.|+++.||..++..++..... | .+.+
T Consensus 88 ~~~L~~-~L~d~~~~vr~aaa~ALg~i-------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-~---~~~L--- 152 (410)
T TIGR02270 88 LRSVLA-VLQAGPEGLCAGIQAALGWL-------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-P---GPAL--- 152 (410)
T ss_pred HHHHHH-HhcCCCHHHHHHHHHHHhcC-------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-h---HHHH---
Confidence 334444 45789999999999999631 1245677888889999999999999888863321 1 2222
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhccc
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF 721 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~ 721 (1874)
... ++ + .++..|..|+.+||.+-... .++.|...+.+ .++.|+.+++.+++.+..
T Consensus 153 -~~~---L~-d-~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d-----~~~~VR~aA~~al~~lG~---- 207 (410)
T TIGR02270 153 -EAA---LT-H-EDALVRAAALRALGELPRRL----------SESTLRLYLRD-----SDPEVRFAALEAGLLAGS---- 207 (410)
T ss_pred -HHH---hc-C-CCHHHHHHHHHHHHhhcccc----------chHHHHHHHcC-----CCHHHHHHHHHHHHHcCC----
Confidence 222 33 3 68899999999999885421 12224444555 388999998888765522
Q ss_pred chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 722 ~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
++..+.+.....+. ....+..+...++.. |. |..+..|..+++.+ .+|+.++.++|.+
T Consensus 208 ------~~A~~~l~~~~~~~-g~~~~~~l~~~lal~----~~--------~~a~~~L~~ll~d~---~vr~~a~~AlG~l 265 (410)
T TIGR02270 208 ------RLAWGVCRRFQVLE-GGPHRQRLLVLLAVA----GG--------PDAQAWLRELLQAA---ATRREALRAVGLV 265 (410)
T ss_pred ------HhHHHHHHHHHhcc-CccHHHHHHHHHHhC----Cc--------hhHHHHHHHHhcCh---hhHHHHHHHHHHc
Confidence 12333444433332 222333233233321 21 36788888888754 4999999999998
Q ss_pred c
Q 000196 802 G 802 (1874)
Q Consensus 802 g 802 (1874)
|
T Consensus 266 g 266 (410)
T TIGR02270 266 G 266 (410)
T ss_pred C
Confidence 8
No 110
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.80 E-value=0.67 Score=58.17 Aligned_cols=118 Identities=14% Similarity=0.026 Sum_probs=82.1
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh---------hhhcH
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD---------VQLKE 1361 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~---------~~~~~ 1361 (1874)
.+..+..++.|.+|+.+++...... ++.....-.|..+|...|+.+.+.-+++....... .....
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4666778888999998888776532 23345667889999999999988887765432211 11123
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1874)
..|.+.|++++|+..|++.+...+. . ......+..++...|+|+.-.+..+..
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~--~-~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDF--A-EGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcc--h-HHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 4578889999999999988754222 1 345667888899999998776655543
No 111
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.79 E-value=1.9 Score=58.79 Aligned_cols=330 Identities=14% Similarity=0.064 Sum_probs=167.2
Q ss_pred CCCCCHHHHHHHHHhccchhhhhhhccchhccccc-cc-----------------------------CCCCcHHHHHHHH
Q 000196 1283 PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARS-NR-----------------------------MDANPVAVVEALI 1332 (1874)
Q Consensus 1283 ~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~-~~-----------------------------~~~~~~~~~e~L~ 1332 (1874)
+-.+.+..+...-.++|.+..|+.+++.-...... .. .-.....+...|+
T Consensus 187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 187 RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 33466777777778888888888776543221100 00 0001122446789
Q ss_pred HHHhhcCChHHHhHHHHHHhchh--hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000196 1333 HINNQLHQHEAAVGILTYAQKEL--DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1874)
Q Consensus 1333 ~iy~~L~~~D~~~Gi~~~~~~~~--~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1874)
+.|.+.|+.|.|..++......- ..+....-|-+.|++++|++.|++-....-.|+. .....+++++..+|.++..
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~--~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ--FTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhccchHHH
Confidence 99999999999999887543211 1112223488999999999999876544334442 3456788889999998765
Q ss_pred HHHHhhhcCC-CChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHH---H
Q 000196 1411 NNLCKEYWTP-AEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLL---V 1486 (1874)
Q Consensus 1411 ~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~---i 1486 (1874)
.+........ ..++ ..+......+..+.|+++...+..+.+...+...+..++..+. ..+..-+|+.. +
T Consensus 345 ~~i~~~m~~~g~~~d--~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~-----~~G~~~~A~~lf~~M 417 (697)
T PLN03081 345 KQAHAGLIRTGFPLD--IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG-----NHGRGTKAVEMFERM 417 (697)
T ss_pred HHHHHHHHHhCCCCC--eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH-----HcCCHHHHHHHHHHH
Confidence 5443322110 0111 1122244567788899999888888775432222211111100 00111111111 1
Q ss_pred H-hcCh--hhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC-CCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhh
Q 000196 1487 R-RGKV--LESYERAYSNMVRVQQLSELEEVIDYCTLPVG-NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV 1562 (1874)
Q Consensus 1487 ~-~~~~--~esy~ray~~l~~lq~L~EleEii~~~~~~~~-~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v 1562 (1874)
. .|.. ...|........+...+.|-.++.+......+ .|. ......+..... -...++.=..++ +..-
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~-----r~G~~~eA~~~~--~~~~ 489 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLG-----REGLLDEAYAMI--RRAP 489 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHH-----hcCCHHHHHHHH--HHCC
Confidence 1 1110 11122222222222223333333221110000 000 001111112211 112233222332 2221
Q ss_pred cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1563 l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
+ ..+..+|-.+.+.|+++|+++.|..+..++.+.+|.. . .....-+..+-..| +..+|.+.++.+
T Consensus 490 ~--~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~----~------~~y~~L~~~y~~~G---~~~~A~~v~~~m 554 (697)
T PLN03081 490 F--KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK----L------NNYVVLLNLYNSSG---RQAEAAKVVETL 554 (697)
T ss_pred C--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC----C------cchHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 2 2457789999999999999999999999988776531 1 11122334444455 468898888876
Q ss_pred HH
Q 000196 1643 AM 1644 (1874)
Q Consensus 1643 ~~ 1644 (1874)
..
T Consensus 555 ~~ 556 (697)
T PLN03081 555 KR 556 (697)
T ss_pred HH
Confidence 54
No 112
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.14 Score=64.74 Aligned_cols=198 Identities=18% Similarity=0.157 Sum_probs=118.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccC------CCCcchhhccHhhHHHHHHHhCCC-CHHHHHHHHHHHHhhhcCCcCcc
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYG------NRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYV 634 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~------~~~f~~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v 634 (1874)
+.+|++....+.|+.....++.-|.+ ....+.+ .-..+++.|...++++ ++++...|+.++--|++..|..+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~f-pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGF-PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 34566555566677776666554421 1111110 1124678888888877 68999999999999999999642
Q ss_pred chHH----HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 000196 635 LPAL----RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710 (1874)
Q Consensus 635 ~p~l----~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~ 710 (1874)
--.. -.++.+-|..+++- +..|+++.+|-.|.+..+..+..- .-+-.++..+.- ....+...++.
T Consensus 248 a~vV~~~aIPvl~~kL~~Ieyi----DvAEQ~LqALE~iSR~H~~AiL~A--G~l~a~LsylDF-----FSi~aQR~Ala 316 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYI----DVAEQSLQALEKISRRHPKAILQA--GALSAVLSYLDF-----FSIHAQRVALA 316 (1051)
T ss_pred heeecccchHHHHHhhhhhhhh----HHHHHHHHHHHHHHhhccHHHHhc--ccHHHHHHHHHH-----HHHHHHHHHHH
Confidence 1111 12333444445554 567888888888887665443321 011122222221 01222333444
Q ss_pred HHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHH
Q 000196 711 TVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779 (1874)
Q Consensus 711 ~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll 779 (1874)
....++.....+--.|+.+.+|++...|+.. +...-+.+.-++..++... .++|+.++.|.
T Consensus 317 iaaN~Cksi~sd~f~~v~ealPlL~~lLs~~-D~k~ies~~ic~~ri~d~f-------~h~~~kLdql~ 377 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFVMEALPLLTPLLSYQ-DKKPIESVCICLTRIADGF-------QHGPDKLDQLC 377 (1051)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhc-------ccChHHHHHHh
Confidence 4445666666666678889999999999865 3445577888888887654 45566776665
No 113
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.78 E-value=0.0096 Score=56.50 Aligned_cols=87 Identities=29% Similarity=0.392 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH
Q 000196 563 EKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL 642 (1874)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l 642 (1874)
+.|+.....|+++.+|..++.+|+. + ..++.++.|...++|+++.||..|+..||++.. .+.+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~---~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~~ 64 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGE---L----GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEAI 64 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHC---C----THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH---c----CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHHH
Confidence 4455555589999999999999962 2 235789999999999999999999999998752 1122
Q ss_pred HHHHHHHhhCCCChHhHHHHHHHHH
Q 000196 643 IQLLTYLEQSSADNKCREESAKLLG 667 (1874)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~ 667 (1874)
..+...+.++ .+...|..|+..||
T Consensus 65 ~~L~~~l~~~-~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDD-DDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CcHHHHHHHHhhcC
Confidence 2222234444 45566888888775
No 114
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=1 Score=57.34 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC
Q 000196 63 FSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142 (1874)
Q Consensus 63 ~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~ 142 (1874)
+.+....+.+-+.+++++.++-.|..+..++..+..... +.. .-.-|.+.|..++. +.|+.|...|..++..+.+..
T Consensus 115 v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~-~~~-~~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 115 VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP-DLV-EDSGLVDALKDLLS-DSNPMVVANALAALSEIHESH 191 (734)
T ss_pred ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh-hhc-cccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhC
Confidence 345566677778888999888889999999999865531 100 01236778888886 568899999999999888753
Q ss_pred -CCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 000196 143 -GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRAC 221 (1874)
Q Consensus 143 -g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~ 221 (1874)
+.....+..+.+...++-+.+-..|+ -+.++..+++..|+.= .-...|++.+..-|...++.|--.|...+-+.
T Consensus 192 ~~~~~~~l~~~~~~~lL~al~ec~EW~----qi~IL~~l~~y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~ 266 (734)
T KOG1061|consen 192 PSVNLLELNPQLINKLLEALNECTEWG----QIFILDCLAEYVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQL 266 (734)
T ss_pred CCCCcccccHHHHHHHHHHHHHhhhhh----HHHHHHHHHhcCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHH
Confidence 33334444455555555444333332 3567888888888753 45667888888888888888867777766665
Q ss_pred HHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh
Q 000196 222 LRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE 273 (1874)
Q Consensus 222 ~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~ 273 (1874)
+..+.+ .....+.++-+.+...+... + +..+.++.=++.++...++
T Consensus 267 ~~~~~~----~~~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 267 VKYLKQ----VNELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHHHHH----HHHHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChH
Confidence 544331 33345556656565555554 2 7778877777766665443
No 115
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.74 E-value=0.15 Score=60.71 Aligned_cols=219 Identities=15% Similarity=0.084 Sum_probs=138.6
Q ss_pred HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 149 EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 149 ~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~--~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
-++..+..+++.+.+ ++...|.+|+..+..+..+ .+..+..+..++++.+.++++-.+..-+..|+.+++-+.-.+.
T Consensus 40 ~~e~~L~~~Id~l~e-K~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTE-KSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 344557777777754 4467899999988776654 6678888999999999999986665555556666654332211
Q ss_pred hcchhhHHHHHHHHHHHHHhhccCCCC-hhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHh--h-c--------
Q 000196 227 KRETRWRVQWYYRMFEATQDGLGRNAP-VHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYL--E-H-------- 292 (1874)
Q Consensus 227 ~r~~~~~~~~~~~i~~~~~~~l~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~--~-~-------- 292 (1874)
.......++..+.|.+...+.+... ...|.+++.+|+-+...++.-..... -+.++.++... + +
T Consensus 119 --~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 119 --AGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred --CCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 1123456777888877777766532 34556666677776653222111111 13344332211 1 1
Q ss_pred -chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchh---hh-hhhhHHHHH
Q 000196 293 -RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDG---EL-FHYLPTITS 365 (1874)
Q Consensus 293 -~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~---~~-~p~l~~i~~ 365 (1874)
.++.|..+++.+++-|+...+..-+..++...++.|..+|.... .|.+|.++|+.+-+.... ++ .+..+.+++
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~ 276 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLE 276 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHH
Confidence 13578999999999998776654344677889999999998764 588999999988665543 22 233444555
Q ss_pred HHHHh
Q 000196 366 HLREA 370 (1874)
Q Consensus 366 ~l~~~ 370 (1874)
.+++.
T Consensus 277 ~l~~L 281 (309)
T PF05004_consen 277 QLREL 281 (309)
T ss_pred HHHHH
Confidence 54443
No 116
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.74 E-value=0.022 Score=72.45 Aligned_cols=194 Identities=13% Similarity=0.133 Sum_probs=134.8
Q ss_pred cHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHh---h-hChHH---H-HHHHHHHHHHHHhhhcCCChhhhhhHHHHH
Q 000196 22 SLDALNRILADLCTHGNPKEGASLALRKHIEEQAR---D-LGGEA---F-SRFMDQLYDRISGLLESNDAAENLGALRAI 93 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~---~-~~~~~---~-~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai 93 (1874)
+.+...++++.|++++- ...|+..+.-++.+.-. + -..+. + ++++.++++.+.+.++......|--=+.|+
T Consensus 813 s~~ia~klld~Ls~~~~-g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 813 SSEIAEKLLDLLSGPST-GSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEAL 891 (1030)
T ss_pred cchHHHHHHHhcCCccc-cchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHH
Confidence 34455666666666421 11244555555433211 1 01111 1 578888888888877755555666566677
Q ss_pred hHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCc--chhH
Q 000196 94 DELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRV--EYRR 170 (1874)
Q Consensus 94 ~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~--~~~r 170 (1874)
...+.--+-+ .-+.+..+.+.|...+. ..|..|+-.+..++.-+....++...+++...++..+..=.+.++ -..|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls-~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALS-MPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcC-CCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence 7666431111 12334556667777775 579999889999999888878899999999999988765433332 5789
Q ss_pred HHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHH
Q 000196 171 FAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEA 217 (1874)
Q Consensus 171 ~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~a 217 (1874)
..|+..+..|.+..|. .+.+|-+.++.+|.+.|.||+-.||+.|.++
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 9999999999997774 8999999999999999999999999998874
No 117
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.72 E-value=2 Score=57.54 Aligned_cols=333 Identities=15% Similarity=0.069 Sum_probs=187.1
Q ss_pred CHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcH
Q 000196 1287 DIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKE 1361 (1874)
Q Consensus 1287 ~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~ 1361 (1874)
.+.+++....+.|.+..|+-.++...... +...+....|.-.....|+.|.+...++..... . . .....
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~------p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la 117 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA------KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVA 117 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC------CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34567778888899999998887766532 344567777878888899999998888754321 1 1 12234
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHH
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWN 1439 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~ 1439 (1874)
..+.+.|++++|...|++.+...++. .+....+.+++..+|+++.-....+... .+..++.. ....+...
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~---~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~-----~~~~~l~~ 189 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGN---SQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI-----ATCLSFLN 189 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHH
Confidence 45788999999999999988754432 4556778889999999987655444321 11122111 11224667
Q ss_pred cCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhc
Q 000196 1440 MGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCT 1519 (1874)
Q Consensus 1440 l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~ 1519 (1874)
.|+++.-......+-..... .........+......++ |..| +..++.++..
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~-------------~~~~~~~~l~~~l~~~g~----~~eA---------~~~~~~al~~-- 241 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFAL-------------ERQESAGLAVDTLCAVGK----YQEA---------IQTGESALAR-- 241 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCC-------------cchhHHHHHHHHHHHCCC----HHHH---------HHHHHHHHhc--
Confidence 88888876655543110000 000000000000111111 1111 1111122111
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccCCHHH-H-HHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 000196 1520 LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEV-W-QALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLL 1596 (1874)
Q Consensus 1520 ~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~-w-~~iL~~R~~v-l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~ 1596 (1874)
.+.. ......+-.... ...+++. . +-+-..++.+ +.| ++...|..++.+..+.|+++.|...+.++.
T Consensus 242 ~p~~----~~~~~~Lg~~l~-----~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 242 GLDG----AALRRSLGLAYY-----QSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred CCCC----HHHHHHHHHHHH-----HcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1110 111111111111 1111110 0 0111122222 334 468899999999999999999999999998
Q ss_pred cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHH
Q 000196 1597 QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYL 1676 (1874)
Q Consensus 1597 ~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~ 1676 (1874)
..+|. .+.+....+..++..|+ ..+|+..++..+...... .......+.++.
T Consensus 312 ~l~P~----------~~~a~~~La~~l~~~G~---~~eA~~~l~~al~~~P~~---------------~~~~~~~a~al~ 363 (656)
T PRK15174 312 ATHPD----------LPYVRAMYARALRQVGQ---YTAASDEFVQLAREKGVT---------------SKWNRYAAAALL 363 (656)
T ss_pred HhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCccc---------------hHHHHHHHHHHH
Confidence 87653 46777778899999995 689999998776531100 000011233333
Q ss_pred HHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1677 KLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1677 ~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
..| ..++.+..|..+++.+|+..
T Consensus 364 ~~G-------------~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 364 QAG-------------KTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HCC-------------CHHHHHHHHHHHHHhChhhc
Confidence 333 45778888999988888744
No 118
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.72 E-value=0.022 Score=61.09 Aligned_cols=142 Identities=21% Similarity=0.166 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhh-cCccchhchHHHHHHH-----------H-HhhcCCchhHHHHHHHHHHHHHHHHhh-------c
Q 000196 169 RRFAAVLILKEMAEN-ASTVFNVHVAEFVDAI-----------W-VALRDPTLAVRERAVEALRACLRVIEK-------R 228 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i-----------~-~~l~D~~~~VR~aA~~al~~~~~~i~~-------r 228 (1874)
.|.+|+.+|..++.. .|+.|++|-+.++|-- + -.++||+++||-+|+.++..+++-.+. +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 599999999999999 6778999988888754 3 346899999999999999988764332 1
Q ss_pred ch---h------hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhcchhHH
Q 000196 229 ET---R------WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEHRDRLV 297 (1874)
Q Consensus 229 ~~---~------~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~~~~~v 297 (1874)
.. . .-..++..+...+...+.........-..+.++..++.+++ ..=...+.+++..+..+..|+++.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 10 0 01122333334444444433222333444556666665433 2222344556666667777788888
Q ss_pred HHHHHHHhHhHhh
Q 000196 298 RLSITSLLPRIAH 310 (1874)
Q Consensus 298 r~~~~~~i~~la~ 310 (1874)
|-+++.+++.+..
T Consensus 162 ~v~~l~~~~~l~s 174 (182)
T PF13251_consen 162 RVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHc
Confidence 8888777777654
No 119
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.62 E-value=0.07 Score=65.36 Aligned_cols=184 Identities=27% Similarity=0.372 Sum_probs=120.5
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
.+.++++.+|..+...++. + ...+.++.+...+.|+++.||..|...||.+.... ..| .++..
T Consensus 51 ~l~~~~~~vr~~aa~~l~~---~----~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~---a~~-------~li~~ 113 (335)
T COG1413 51 LLEDEDLLVRLSAAVALGE---L----GSEEAVPLLRELLSDEDPRVRDAAADALGELGDPE---AVP-------PLVEL 113 (335)
T ss_pred HHcCCCHHHHHHHHHHHhh---h----chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh---HHH-------HHHHH
Confidence 3577899999999888752 1 12467899999999999999999999888755321 222 23333
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCC-------CCCChhHHHHHHHHHHHHHHhccc
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTG-------INANNGIISGVLVTVGDLARVGGF 721 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~-------~~~~~~v~~~~~~~l~~La~~~g~ 721 (1874)
+..+ .+...|..+++.|+.+-.... +..++..+.+... ......++..+..+++.+..
T Consensus 114 l~~d-~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~---- 178 (335)
T COG1413 114 LEND-ENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD---- 178 (335)
T ss_pred HHcC-CcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC----
Confidence 3434 577889999999888754322 3334444444310 00111344444545444322
Q ss_pred chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 722 ~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
+...+.+...+.+. +..+|..|..+||.+.... ..+...+...+.+ .++.+|..++..+|.+
T Consensus 179 ------~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~-~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 179 ------PEAIPLLIELLEDE-DADVRRAAASALGQLGSEN----------VEAADLLVKALSD-ESLEVRKAALLALGEI 240 (335)
T ss_pred ------hhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcC-CCHHHHHHHHHHhccc
Confidence 34566777788776 4589999999999875432 2455666666654 4789999999998887
Q ss_pred c
Q 000196 802 G 802 (1874)
Q Consensus 802 g 802 (1874)
|
T Consensus 241 ~ 241 (335)
T COG1413 241 G 241 (335)
T ss_pred C
Confidence 6
No 120
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.60 E-value=7.8 Score=56.01 Aligned_cols=194 Identities=13% Similarity=0.010 Sum_probs=118.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccc----cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENV----RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
++...|..++.+..+.|+++.|...+.++...+|....... .........+..+.....+|+ ..+|+..+++.
T Consensus 301 ~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~---~~eA~~~~~~A 377 (1157)
T PRK11447 301 KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN---LAQAERLYQQA 377 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 56889999999999999999999999999877653210000 000000112233455566774 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
+..... .+.++..+|.-.... ...++.++.|+++++.+|+...+|+.++...
T Consensus 378 l~~~P~----------------------~~~a~~~Lg~~~~~~------g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 378 RQVDNT----------------------DSYAVLGLGDVAMAR------KDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHhCCC----------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 653110 012333444443332 2457888999999999999999999887764
Q ss_pred HH-----HHHhhhc--cCCC---------------------CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHH
Q 000196 1723 TA-----VMSHYTL--RGLP---------------------SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLT 1774 (1874)
Q Consensus 1723 ~~-----~~~~~~~--~~~~---------------------~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLt 1774 (1874)
.. .+..... ...+ .....-...|++.|-+++... + .......++-.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P-~~~~~~~~LA~ 503 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----P-GSVWLTYRLAQ 503 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHH
Confidence 21 1100000 0000 000123357888898888875 2 23445677788
Q ss_pred HHHhcCCcHHHHHHHHhcccCCC
Q 000196 1775 LWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1775 Lwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
+++..|+..+....+++.+..-|
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC
Confidence 88888988877777776654333
No 121
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.54 E-value=1.5 Score=59.62 Aligned_cols=477 Identities=12% Similarity=0.084 Sum_probs=232.0
Q ss_pred HHHHHHHhhhCCC--CCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHH
Q 000196 1270 LLNLAEFMEHDEK--PLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGI 1347 (1874)
Q Consensus 1270 ll~l~e~m~~~~~--~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi 1347 (1874)
.+.+.+.|...+. |-...+..+..++.+.+.+..|....+.-.... ..+ ...+...|+..|.+.|+.|.|..+
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g----~~~-~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG----FEP-DQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC----CCc-chHHHHHHHHHHhcCCCHHHHHHH
Confidence 3444455654331 112334566667777777665554443222111 122 346778999999999999999999
Q ss_pred HHHHhch--hhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-CCChH
Q 000196 1348 LTYAQKE--LDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-PAEPA 1424 (1874)
Q Consensus 1348 ~~~~~~~--~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-~~~~~ 1424 (1874)
+...... .........|-+.|++++|++.|++-......|+. ......++++..+|..+.-...-..... ...++
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~--~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP--RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh--hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 8754321 11122223478899999999999987665444432 3446778888888876543332111000 00000
Q ss_pred HHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHH---HHHHh-cC--hhhhHHHH
Q 000196 1425 ARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAV---LLVRR-GK--VLESYERA 1498 (1874)
Q Consensus 1425 ~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~---~~i~~-~~--~~esy~ra 1498 (1874)
..+......+.-+.|+++...+..+.++..+...+..++..+.. .+.+-+|+ ..+.+ +- -.-.|...
T Consensus 259 --~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~-----~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 259 --TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL-----HGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred --ceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 11112345677788999998888888765433222222111110 01111221 11111 11 11234433
Q ss_pred HHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHH
Q 000196 1499 YSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASL 1578 (1874)
Q Consensus 1499 y~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~l 1578 (1874)
.....++..+.+-+++....... +-+........+.....+ ..+++.=..++. -+ +..+..+|--++..
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~---~m--~~~d~~t~n~lI~~ 400 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSK-----WGRMEDARNVFD---RM--PRKNLISWNALIAG 400 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHH-----CCCHHHHHHHHH---hC--CCCCeeeHHHHHHH
Confidence 33444444455544444322110 000000011122222211 122332222221 11 12467889999999
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHH-HHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000196 1579 CRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA-YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1874)
Q Consensus 1579 aRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e-~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~ 1657 (1874)
+-++|+.+.|...+.++..... . |..+++- .+.-+-+.| ..++|.+.++.+..+....++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~--~--------Pd~~T~~~ll~a~~~~g---~~~~a~~~f~~m~~~~g~~p~------ 461 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGV--A--------PNHVTFLAVLSACRYSG---LSEQGWEIFQSMSENHRIKPR------ 461 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--C--------CCHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHhcCCCCC------
Confidence 9999999999999988764321 1 2233332 223333445 467898888887654221111
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCc
Q 000196 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSV 1737 (1874)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~ 1737 (1874)
...-..+...|.+.| .++++.+.|++.- ..| ....|..+...|.. .++
T Consensus 462 -------~~~y~~li~~l~r~G-------------~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~-------~g~--- 509 (697)
T PLN03081 462 -------AMHYACMIELLGREG-------------LLDEAYAMIRRAP-FKP-TVNMWAALLTACRI-------HKN--- 509 (697)
T ss_pred -------ccchHhHHHHHHhcC-------------CHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHH-------cCC---
Confidence 001112233333333 3455656565431 222 34456665554432 110
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHH----HhcccCCChhhHHHHHHHHHH---
Q 000196 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIAL----QKGFAHVNINTWLVVLPQIIA--- 1810 (1874)
Q Consensus 1738 ~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~----~~~~~~ip~~~wl~~ipQLia--- 1810 (1874)
+..|...+-+.+.+.+ .+ ...-.-|..++...|..+++.+.+ ++++...|-+.|+++--+.-.
T Consensus 510 ----~~~a~~~~~~l~~~~p-----~~-~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 579 (697)
T PLN03081 510 ----LELGRLAAEKLYGMGP-----EK-LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFS 579 (697)
T ss_pred ----cHHHHHHHHHHhCCCC-----CC-CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEcc
Confidence 1112222222233321 11 111234666777777776654433 356777788888765322111
Q ss_pred -hccCCC-hhHHHHHHHHHHHHHh
Q 000196 1811 -RIHSNN-RAVRELIQSLLVRIGQ 1832 (1874)
Q Consensus 1811 -ri~~~~-~~v~~~l~~ll~~i~~ 1832 (1874)
--.||. ..+.+.+..++.++.+
T Consensus 580 ~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 580 GDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHH
Confidence 123443 3455556666666654
No 122
>PLN03077 Protein ECB2; Provisional
Probab=96.54 E-value=5.1 Score=56.05 Aligned_cols=463 Identities=13% Similarity=0.081 Sum_probs=229.8
Q ss_pred CCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch--hhhhhcHH
Q 000196 1285 PIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE--LDVQLKES 1362 (1874)
Q Consensus 1285 ~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--~~~~~~~~ 1362 (1874)
.+.+..+..++.+.+....|.-..+...... . .....+...|+..|.+.|+.|.+..++...... ...+....
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g----~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~ 362 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTG----F-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhC----C-ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHH
Confidence 3445555666666666555544333322211 1 123467789999999999999999998854321 01112223
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMG 1441 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~ 1441 (1874)
.|-+.|++++|++.|++-....-.|+. ......+..+.++|+++...+........ ..+. ..+......+..+.|
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~--~~~~n~Li~~y~k~g 438 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDE--ITIASVLSACACLGDLDVGVKLHELAERKGLISY--VVVANALIEMYSKCK 438 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCc--eeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcC
Confidence 488999999999999876544333432 23467788888899887665544322111 0111 122234457788899
Q ss_pred ChhhHHHHHhhcCCCCcchhhccccccc-cCCCCCchHHHHHHHHHHhcC--hhhhHHHHHHHHHHhHhhhhHHHHHHhh
Q 000196 1442 EWDQMAEYVSRLDDGDESKLRGLGNTAA-NGDGSSNGTFFRAVLLVRRGK--VLESYERAYSNMVRVQQLSELEEVIDYC 1518 (1874)
Q Consensus 1442 ~Wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~a~~~i~~~~--~~esy~ray~~l~~lq~L~EleEii~~~ 1518 (1874)
+++...+..+.+...+...+..+...+. .+.....-.+|+.+. .+. -.-.|........++-.+.+-.++..+.
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~---~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML---LTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH---hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 9999999888886543222221111110 000000011222221 111 1112333333333333444444443322
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 000196 1519 TLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQY 1598 (1874)
Q Consensus 1519 ~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~ 1598 (1874)
... +-.........+...+.+ ..+++.-..++.- + ..|..+|--++..+-++|+.+.|...+.++...
T Consensus 516 ~~~-g~~~~~~~~naLi~~y~k-----~G~~~~A~~~f~~---~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~ 583 (857)
T PLN03077 516 LRT-GIGFDGFLPNALLDLYVR-----CGRMNYAWNQFNS---H---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583 (857)
T ss_pred HHh-CCCccceechHHHHHHHH-----cCCHHHHHHHHHh---c---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 110 000000001122233321 1233333332221 1 356889999999999999999999999887643
Q ss_pred CCCCCcccccCCCChHHHHHH-HHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHH
Q 000196 1599 DPETSHENVRYHGPPQVMYAY-LKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLK 1677 (1874)
Q Consensus 1599 ~~~~~~~~~~~~~~~~v~~e~-~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 1677 (1874)
.. .| ..+++.. +.-.-+.| ...+|.+.++.+..+....++ ...-..+..+|.+
T Consensus 584 g~--~P--------d~~T~~~ll~a~~~~g---~v~ea~~~f~~M~~~~gi~P~-------------~~~y~~lv~~l~r 637 (857)
T PLN03077 584 GV--NP--------DEVTFISLLCACSRSG---MVTQGLEYFHSMEEKYSITPN-------------LKHYACVVDLLGR 637 (857)
T ss_pred CC--CC--------CcccHHHHHHHHhhcC---hHHHHHHHHHHHHHHhCCCCc-------------hHHHHHHHHHHHh
Confidence 21 11 1222222 22333445 467899988887754332111 0011122333333
Q ss_pred HhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000196 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1874)
Q Consensus 1678 ~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~ 1757 (1874)
.|+ .+++.+.+++. .+.| ...+|..+-..|.. . + ..+....+.+..+ .+.+
T Consensus 638 ~G~-------------~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~----~---~----~~e~~e~~a~~l~---~l~p 688 (857)
T PLN03077 638 AGK-------------LTEAYNFINKM-PITP-DPAVWGALLNACRI----H---R----HVELGELAAQHIF---ELDP 688 (857)
T ss_pred CCC-------------HHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH----c---C----ChHHHHHHHHHHH---hhCC
Confidence 333 45565666553 2334 34667766555421 1 1 1122223333322 2321
Q ss_pred ccCCCcchHHhHHHHHHHHHhcCCcHHHHH---HH-HhcccCCChhhHHHHHHHHH----HhccCCC-hhHHHHHHHHHH
Q 000196 1758 HAKGVDDSLQDILRLLTLWFNHGATEEVQI---AL-QKGFAHVNINTWLVVLPQII----ARIHSNN-RAVRELIQSLLV 1828 (1874)
Q Consensus 1758 ~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~---~~-~~~~~~ip~~~wl~~ipQLi----ari~~~~-~~v~~~l~~ll~ 1828 (1874)
. ....-.-|.+++...|..+++.+ .| ++++...|-+-|+++=-..= .--.||. ..+...+..|..
T Consensus 689 -----~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 762 (857)
T PLN03077 689 -----N-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYE 762 (857)
T ss_pred -----C-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHH
Confidence 1 12223345567777787776544 33 35688888888886532211 1113443 445666666666
Q ss_pred HHHh
Q 000196 1829 RIGQ 1832 (1874)
Q Consensus 1829 ~i~~ 1832 (1874)
++.+
T Consensus 763 ~~~~ 766 (857)
T PLN03077 763 KMKA 766 (857)
T ss_pred HHHh
Confidence 6654
No 123
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=3.7 Score=51.56 Aligned_cols=351 Identities=16% Similarity=0.205 Sum_probs=178.5
Q ss_pred hHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhc
Q 000196 169 RRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l 248 (1874)
.++-+-+++..|.+...+++ .-+...|-+-|...++.--.-|..+++. +..|+- ...+...+. .-|
T Consensus 90 EKqIGYl~is~L~n~n~dl~----klvin~iknDL~srn~~fv~LAL~~I~n----iG~re~--~ea~~~DI~----KlL 155 (938)
T KOG1077|consen 90 EKQIGYLFISLLLNENSDLM----KLVINSIKNDLSSRNPTFVCLALHCIAN----IGSREM--AEAFADDIP----KLL 155 (938)
T ss_pred HHHHhHHHHHHHHhcchHHH----HHHHHHHHhhhhcCCcHHHHHHHHHHHh----hccHhH--HHHhhhhhH----HHH
Confidence 45666677777776654443 3455556667766666654445554443 333442 222222222 223
Q ss_pred cCCCC-hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHH
Q 000196 249 GRNAP-VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNH 327 (1874)
Q Consensus 249 ~~~~~-~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~ 327 (1874)
-+++. .-+++.|.++|=.|.+..++.+.+ ++-.+.++..+++.+-.|-.++..+|-.++...++.+. .+++.
T Consensus 156 vS~~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk-----~~~~~ 228 (938)
T KOG1077|consen 156 VSGSSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK-----TCLPL 228 (938)
T ss_pred hCCcchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh-----hhHHH
Confidence 23221 346777777888888887776554 23334555667888877888899999999988887543 23332
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhhchhhhhhhh------HHHHHHHHHhh---cCC-CCCCCchhHHHHHHHHHHhCCCc
Q 000196 328 ILTVLRIPAERDSGFIALGEMAGALDGELFHYL------PTITSHLREAI---APR-RGKPSLEALACVGNIARAMGPVM 397 (1874)
Q Consensus 328 Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l------~~i~~~l~~~L---~~~-~~~~~~~a~~~l~~l~~~~g~~~ 397 (1874)
|..-|..++.++|..+..|. |-+.-.+...| ... ++..+...++|+..|.....+-
T Consensus 229 -------------avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~- 294 (938)
T KOG1077|consen 229 -------------AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEP- 294 (938)
T ss_pred -------------HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccC-
Confidence 22333345666665543332 11222222222 111 1111233445554443322110
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccC
Q 000196 398 EPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLN 477 (1874)
Q Consensus 398 ~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1874)
|-...+... ..-..=|++.|+.+..- | .
T Consensus 295 -~~~k~vq~~-------------------------na~naVLFeaI~l~~h~-------------------------D-~ 322 (938)
T KOG1077|consen 295 -PKSKKVQHS-------------------------NAKNAVLFEAISLAIHL-------------------------D-S 322 (938)
T ss_pred -ccccchHhh-------------------------hhHHHHHHHHHHHHHHc-------------------------C-C
Confidence 000000000 00011123333322110 0 1
Q ss_pred CchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH
Q 000196 478 GSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL 557 (1874)
Q Consensus 478 ~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1874)
+++....|+..||.| +.+....+|.-|-.++|.+....+ +...
T Consensus 323 e~~ll~~~~~~Lg~f------------------ls~rE~NiRYLaLEsm~~L~ss~~-------------------s~da 365 (938)
T KOG1077|consen 323 EPELLSRAVNQLGQF------------------LSHRETNIRYLALESMCKLASSEF-------------------SIDA 365 (938)
T ss_pred cHHHHHHHHHHHHHH------------------hhcccccchhhhHHHHHHHHhccc-------------------hHHH
Confidence 233455666666655 455567888888889999876432 1112
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccch
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLP 636 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p 636 (1874)
+..=.+.++...-+|+|..||+.+++-|-. |. ..- -..++.-+++.+...++.+|+..+--+.-|++..... +.
T Consensus 366 vK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~N-ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtD-y~ 440 (938)
T KOG1077|consen 366 VKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSN-AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATD-YS 440 (938)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhh-HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC-cc
Confidence 222222333444569999999998887631 11 111 1235566666666677888876554444455543221 23
Q ss_pred HHHHHHHHHHHH
Q 000196 637 ALRRHLIQLLTY 648 (1874)
Q Consensus 637 ~l~~~l~~~l~~ 648 (1874)
..-.++++++..
T Consensus 441 WyVdviLqLiri 452 (938)
T KOG1077|consen 441 WYVDVILQLIRI 452 (938)
T ss_pred hhHHHHHHHHHH
Confidence 445566666654
No 124
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=1.1 Score=56.55 Aligned_cols=160 Identities=17% Similarity=0.208 Sum_probs=87.4
Q ss_pred HHHHHhhccccc-CCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHH
Q 000196 483 QLALQTLARFNF-KGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEEL 561 (1874)
Q Consensus 483 ~~Al~~L~~~~f-~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 561 (1874)
..-++.|.++.- ....+.+++-++ ++.++.++-+||+.+..-.-.++.. + ...+++..+
T Consensus 298 lIvldrl~~l~~~~~~il~~l~mDv-LrvLss~dldvr~Ktldi~ldLvss-------------r------Nvediv~~L 357 (948)
T KOG1058|consen 298 LIVLDRLSELKALHEKILQGLIMDV-LRVLSSPDLDVRSKTLDIALDLVSS-------------R------NVEDIVQFL 357 (948)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHH-HHHcCcccccHHHHHHHHHHhhhhh-------------c------cHHHHHHHH
Confidence 344555555531 012233444443 5788899999998766544444321 1 122333322
Q ss_pred HHHHHHHHh--cCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH
Q 000196 562 VEKLLIAAV--ADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1874)
Q Consensus 562 l~~Ll~~~~--~d~~~~vR~~~l~~l~~~-~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1874)
-..+....- .|.....|...++.+..| ..| +..+ ..+++.++..+.|.+..--..++..+....+.+| .|
T Consensus 358 kke~~kT~~~e~d~~~~yRqlLiktih~cav~F-p~~a-atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p-----~L 430 (948)
T KOG1058|consen 358 KKEVMKTHNEESDDNGKYRQLLIKTIHACAVKF-PEVA-ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP-----NL 430 (948)
T ss_pred HHHHHhccccccccchHHHHHHHHHHHHHhhcC-hHHH-HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc-----hH
Confidence 222222211 233345688888877533 233 3232 4578999999999998877777777777777665 45
Q ss_pred HHHHHH----HHHHHhhCCCChHhHHHHHHHHHHHHHhC
Q 000196 639 RRHLIQ----LLTYLEQSSADNKCREESAKLLGCLIRNC 673 (1874)
Q Consensus 639 ~~~l~~----~l~~l~~~~~~~~~r~~a~~~L~~l~~~~ 673 (1874)
|..++. .+..+.. ++.-+-|+|.+|+-++..
T Consensus 431 r~~ii~~l~~~~~~irS----~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 431 RASIIEKLLETFPQIRS----SKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHHHHHhhhhhcc----cccchhHHHHHHHHHhhh
Confidence 544333 2333322 334456778887776553
No 125
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.50 E-value=0.01 Score=56.29 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=67.8
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc
Q 000196 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1874)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~ 764 (1874)
++.|+..+.++ .++.++..++.++|.+. -++.+|.+++.+.|. +..+|..|+.+||.+-
T Consensus 1 i~~L~~~l~~~----~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~------ 59 (88)
T PF13646_consen 1 IPALLQLLQND----PDPQVRAEAARALGELG----------DPEAIPALIELLKDE-DPMVRRAAARALGRIG------ 59 (88)
T ss_dssp HHHHHHHHHTS----SSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH------
T ss_pred CHHHHHHHhcC----CCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC------
Confidence 35667777332 38899999998888432 247899999999875 6899999999999762
Q ss_pred ccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000196 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1874)
Q Consensus 765 i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg 799 (1874)
-|+.++.|...+.++.+..+|.+++..||
T Consensus 60 ------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 15678888898988778888999998876
No 126
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=4.4 Score=51.84 Aligned_cols=54 Identities=26% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhhhChHHHH-HHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000196 43 ASLALRKHIEEQARDLGGEAFS-RFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1874)
Q Consensus 43 aa~~l~~~v~~~~~~~~~~~~~-~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~ 99 (1874)
+.+-|.+++--. ..+|.|. .--.+++=.+.+++++.|.-.|..--++|..+-..
T Consensus 40 c~~~lskllyll---~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~i 94 (865)
T KOG1078|consen 40 CRHILSKLLYLL---NQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKI 94 (865)
T ss_pred HHHHHHHHHHHH---hcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhcccc
Confidence 555555554222 3344442 22233444566777777777777777777776444
No 127
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.40 E-value=4.2 Score=56.78 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=44.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS-LGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~-~g~~~~~~~Al~~l~~~~~ 1644 (1874)
.+..+|-.++..+.+.|+++.|...+.++....- .|..+.|..+-..+. .| +..+|.+.+..+.+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi----------~Pd~~Ty~sLL~a~~k~G---~le~A~~l~~~M~k 782 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGL----------CPNTITYSILLVASERKD---DADVGLDLLSQAKE 782 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH
Confidence 4678899999999999999999999988754321 122344443333333 34 36788888888765
No 128
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.31 E-value=0.059 Score=58.83 Aligned_cols=108 Identities=24% Similarity=0.311 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC--CCCcc
Q 000196 515 DKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG--NRGFD 592 (1874)
Q Consensus 515 ~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~--~~~f~ 592 (1874)
|+.||.-++.+++.+..+-+ .+++..++.+.. .+.|+++.||..++..|+. ...+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---------------------~~ve~~~~~l~~-~L~D~~~~VR~~al~~Ls~Li~~d~i 58 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---------------------NLVEPYLPNLYK-CLRDEDPLVRKTALLVLSHLILEDMI 58 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---------------------HHHHhHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHcCce
Confidence 57899999999999886432 345555555544 5789999999999988741 00110
Q ss_pred hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcC-CcCccchHHHHHHHHHHHHHh
Q 000196 593 DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK-NPAYVLPALRRHLIQLLTYLE 650 (1874)
Q Consensus 593 ~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~~l~~l~ 650 (1874)
. ....++..+..++.|++++||..|..++..+... +|..+... +.+++..+.
T Consensus 59 k--~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~----~~e~i~~l~ 111 (178)
T PF12717_consen 59 K--VKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIYNN----FPELISSLN 111 (178)
T ss_pred e--ehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHHHH----HHHHHHHHh
Confidence 1 1123446666788999999999999999999988 77655444 445555554
No 129
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.27 E-value=0.25 Score=53.98 Aligned_cols=113 Identities=20% Similarity=0.177 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh
Q 000196 124 DREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1874)
Q Consensus 124 d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l 203 (1874)
|+.++..+..++|-|+.. -+.+++..++.....|.+ .++..|..|+.++..|...-.--+. ++++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r----~~~~ve~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR----YPNLVEPYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence 467889999999999885 456778888888888864 4567788899999998876333333 45566777888
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCC
Q 000196 204 RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRN 251 (1874)
Q Consensus 204 ~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~ 251 (1874)
.|+++.||..|..++..+... +. +..+...++++...+.+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~---~~----~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK---RN----PNIIYNNFPELISSLNNC 113 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh---cc----chHHHHHHHHHHHHHhCc
Confidence 999999999999988776542 11 234566667776666653
No 130
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.22 E-value=0.13 Score=67.75 Aligned_cols=193 Identities=16% Similarity=0.120 Sum_probs=132.2
Q ss_pred HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc
Q 000196 109 SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF 188 (1874)
Q Consensus 109 ~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~ 188 (1874)
.++...+..-+. +.+-.-+..|.+.+.......+.....-...++...+.....|.+-+.-.-|+..|..||...+..+
T Consensus 252 ~ki~~~l~t~~~-s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 252 SKITKNLETEML-SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred hhcChHHHHhhh-ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 344333333332 3466778888888777666533222222223444444444455555566668889999999999999
Q ss_pred hhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 000196 189 NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELL 268 (1874)
Q Consensus 189 ~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll 268 (1874)
.+|...++|.++..+.|....+|+++..++...+.. .-+..+.+.+...+++.+ ...+......++..+
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns----------~~l~~~~~~I~e~lk~kn-p~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS----------TPLSKMSEAILEALKGKN-PQIKGECLLLLDRKL 399 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHH
Confidence 999999999999999999999999999988877652 124566777777787765 455666677888877
Q ss_pred Hcchh--hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh
Q 000196 269 RNTGE--FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313 (1874)
Q Consensus 269 ~~~~~--~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~ 313 (1874)
+..+. .-.+....++..++...++++..||.++..+++.+...-+
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 75442 2223455677777777778888888888888887765433
No 131
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.21 E-value=0.035 Score=58.89 Aligned_cols=153 Identities=15% Similarity=0.253 Sum_probs=95.4
Q ss_pred chhhccHhhHHHHHHHhC-CCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHH
Q 000196 592 DDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1874)
Q Consensus 592 ~~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1874)
+||...|+.+..|+..++ +.+..+|..+++++|-|....| +-.+.+......-............ ..+.
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP-----~~~k~~~~~~~~~~~~~~~~~~~~~-----~l~~ 72 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDP-----YKHKSIQKSLDSKSSENSNDESTDI-----SLPM 72 (160)
T ss_pred chHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc-----HHHhcccccCCccccccccccchhh-----HHhh
Confidence 466667888999888776 4579999999999999988765 3333221111100000000000000 0011
Q ss_pred HhCccccccch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHH
Q 000196 671 RNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREV 749 (1874)
Q Consensus 671 ~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~ 749 (1874)
.........|. .-.+..|+..++|.+ ...-..+++.++-.+....|....+|+++++|.++..++... ...|+.
T Consensus 73 ~~~~~~~ee~y~~vvi~~L~~iL~D~s----Ls~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~-~~~~e~ 147 (160)
T PF11865_consen 73 MGISPSSEEYYPTVVINALMRILRDPS----LSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP-DSLREF 147 (160)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC-HHHHHH
Confidence 11111222333 346778888888863 333445667777777777888889999999999999999654 478888
Q ss_pred HHHHHHHHHh
Q 000196 750 AVSTLGQVVQ 759 (1874)
Q Consensus 750 A~~~Lg~l~~ 759 (1874)
-+.-|+.++.
T Consensus 148 ~~~qL~~lv~ 157 (160)
T PF11865_consen 148 YFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHH
Confidence 8888887764
No 132
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.17 E-value=0.0075 Score=44.06 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=25.7
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 195 FVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 195 il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
++|.++..+.||++.||.+|+.+|+.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999998765
No 133
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=96.13 E-value=0.68 Score=57.72 Aligned_cols=229 Identities=11% Similarity=0.101 Sum_probs=140.7
Q ss_pred ccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh----cCCCCHHHHHHHH
Q 000196 720 GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREVL 795 (1874)
Q Consensus 720 g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l----~~~~~~~vr~~al 795 (1874)
.+++.|+..+++..++..+....+ ..-+-..+++-+++...+..+.|+. +.+++.|..++ ++..++..--=.+
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s-~ENeylMk~iMRvl~~~~e~~~p~~--~~il~~L~~il~~v~kNPsnP~FnHylF 93 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGS-AENEYLMKCIMRVLSVLQEDILPIA--VEILQHLTAILKEVSKNPSNPRFNHYLF 93 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-S-TC-HHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHhCCCCcchhhhHH
Confidence 467899999999999999975432 3445567888888888788788884 35666666555 5666677666666
Q ss_pred HHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhH
Q 000196 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYH 875 (1874)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~ 875 (1874)
.++|.+-- +..+ .. +..-.-+...+++.+..+|..+- .+..
T Consensus 94 Esi~~lir---~~~~------------------~~-----------------~~~v~~~E~~L~P~f~~ILq~dV-~EF~ 134 (435)
T PF03378_consen 94 ESIGALIR---FVCE------------------AD-----------------PEAVSQFEEALFPPFQEILQQDV-QEFI 134 (435)
T ss_dssp HHHHHHHH---HS-G------------------GG-----------------HH---HHHHHHHHHHHHHHHTT--TTTH
T ss_pred HHHHHHHH---hccC------------------CC-----------------hhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 77666521 1000 00 00001234667777888886542 3677
Q ss_pred HHHHHHHHHHHHHhC-CCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHH--HhHHHHHHHHHHhhcCC
Q 000196 876 QKVVGSLMFIFKSMG-LGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIR--KYLQELFSLISELWSSF 952 (1874)
Q Consensus 876 ~~v~~al~~i~~~~~-~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~--~y~~~i~~~i~~~~~~~ 952 (1874)
+.|+|-+..+++... ....+...+++|.++.-.--.....--.+...|..++..-...+. +++..|+.++.......
T Consensus 135 PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk 214 (435)
T PF03378_consen 135 PYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASK 214 (435)
T ss_dssp HHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCC
Confidence 889998888888765 345567777888877532111111122333444455544444443 67788888887776643
Q ss_pred CCCcccccccchhHHHHHHHHHHHhhh-hhhccchhhHHHHHHhccc
Q 000196 953 SLPATNRTYRGLPVLHLVQQLCLALND-EFRTHLPVILPCCIQVLSD 998 (1874)
Q Consensus 953 ~~~~~~~~~~~~~~l~~i~~l~~~l~~-~f~~yl~~llp~ll~~l~~ 998 (1874)
.. ....+.+++++...++. .+.||++.++..+++.|++
T Consensus 215 ~~--------D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~ 253 (435)
T PF03378_consen 215 AN--------DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQS 253 (435)
T ss_dssp TC--------HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHH
T ss_pred Cc--------chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 31 12578899999999987 4899999999999999975
No 134
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.10 E-value=6 Score=49.55 Aligned_cols=213 Identities=14% Similarity=0.080 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|...+....+.|+++.|...+.++...++. ........+.++...|+ ..+|+..++.+++.-..
T Consensus 107 ~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~ 173 (389)
T PRK11788 107 LLALQELGQDYLKAGLLDRAEELFLQLVDEGDF----------AEGALQQLLEIYQQEKD---WQKAIDVAERLEKLGGD 173 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcc----------hHHHHHHHHHHHHHhch---HHHHHHHHHHHHHhcCC
Confidence 467889999999999999999999988765331 24556677788888884 67899988887653110
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
......+..+..+|.-..+. ...++..+.|.++++.+|+...+|..+|.....
T Consensus 174 -----------------~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---- 226 (389)
T PRK11788 174 -----------------SLRVEIAHFYCELAQQALAR------GDLDAARALLKKALAADPQCVRASILLGDLALA---- 226 (389)
T ss_pred -----------------cchHHHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH----
Confidence 01112344455566554432 457899999999999999988888888766443
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHH
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQI 1808 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQL 1808 (1874)
.+ -...|++-|-+++..+ +.+......++..++...|...+....+++.+..-|....+..+-++
T Consensus 227 ---~g-------~~~~A~~~~~~~~~~~-----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~ 291 (389)
T PRK11788 227 ---QG-------DYAAAIEALERVEEQD-----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQL 291 (389)
T ss_pred ---CC-------CHHHHHHHHHHHHHHC-----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 11 2335677777766543 23333445677788889898888777777766555543322333333
Q ss_pred HHhccCCChhHHHHHHHHHHHHHhhCchhhHHH
Q 000196 1809 IARIHSNNRAVRELIQSLLVRIGQSHPQALMYP 1841 (1874)
Q Consensus 1809 iari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~ 1841 (1874)
..+.+..+ --..++.+..+.+|...-|-
T Consensus 292 ~~~~g~~~-----~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 292 LEEQEGPE-----AAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred HHHhCCHH-----HHHHHHHHHHHhCcCHHHHH
Confidence 33333322 23345555566789876554
No 135
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=1.7 Score=55.57 Aligned_cols=208 Identities=16% Similarity=0.200 Sum_probs=120.8
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhh----cCccchh-chHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHh
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAEN----ASTVFNV-HVAEFVDAIWVALRDP-TLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~----~p~~~~~-~l~~il~~i~~~l~D~-~~~VR~aA~~al~~~~~~i~ 226 (1874)
-++.+++.|+.+.++..... .+.+|++. .-..+.. -+..++|.|...|++. ++.|.--|+.|+-.++++..
T Consensus 168 k~kkLL~gL~~~~Des~Qle---al~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLE---ALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred HHHHHHHhccccCChHHHHH---HHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 47788888887666655444 44555544 2223322 4678899999999876 58899999999998888765
Q ss_pred hcchhhHHH--HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000196 227 KRETRWRVQ--WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSL 304 (1874)
Q Consensus 227 ~r~~~~~~~--~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~ 304 (1874)
+......+ .++.+++.++. -.=.|+.+-++.+|.-+-+-.+..+.. ..-+..++.+++-=+-.+|+.++.+
T Consensus 245 -~S~a~vV~~~aIPvl~~kL~~----IeyiDvAEQ~LqALE~iSR~H~~AiL~--AG~l~a~LsylDFFSi~aQR~Alai 317 (1051)
T KOG0168|consen 245 -RSSAIVVDEHAIPVLLEKLLT----IEYIDVAEQSLQALEKISRRHPKAILQ--AGALSAVLSYLDFFSIHAQRVALAI 317 (1051)
T ss_pred -chhheeecccchHHHHHhhhh----hhhhHHHHHHHHHHHHHHhhccHHHHh--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211111 22223322221 111345555666665554422211100 0012234455555556788888877
Q ss_pred hHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCCCCc--chHHHHHHHHHhhchh---hhhhh-hHHHHHHHHHhhc
Q 000196 305 LPRIAHFL-RDRFVTNYLKICMNHILTVLRIPAER--DSGFIALGEMAGALDG---ELFHY-LPTITSHLREAIA 372 (1874)
Q Consensus 305 i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~~~R--~~a~~alg~la~~v~~---~~~p~-l~~i~~~l~~~L~ 372 (1874)
....|... +++| +|+-+.+|.|.+.|...+.+ ..+..|+..++...-. .+... -.+++..+.+-+.
T Consensus 318 aaN~Cksi~sd~f--~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 318 AANCCKSIRSDEF--HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHhcCCCccc--hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 77777643 4566 58899999999999876554 4666677777665432 22221 2456666666663
No 136
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=4.2 Score=51.26 Aligned_cols=183 Identities=17% Similarity=0.164 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHH--HHhHhhc
Q 000196 22 SLDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALR--AIDELID 98 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~--ai~~li~ 98 (1874)
+..-+..||+..+... ....+. +++++ .-...+.|...+..+++.+.-+-+.+...+|.-..+ -++.|-.
T Consensus 3 ~~~r~~~If~k~Q~s~agh~~kl---~~k~~----em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q 75 (892)
T KOG2025|consen 3 SLERMQLIFNKIQQSDAGHYSKL---LAKVM----EMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQ 75 (892)
T ss_pred HHHHHHHHHHHHHhhhcchHHHH---HHHHH----HhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhc
Confidence 3455677777775432 221211 22222 223333454444445554444556666666653322 2344433
Q ss_pred cccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHH
Q 000196 99 VALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILK 178 (1874)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~ 178 (1874)
.+.++ ..+..+..||.+-.. ++|..||...++.+.++..-.+....++...+.+..+.-+. ++..+.|..|+.+|+
T Consensus 76 ~d~e~--DlV~~~f~hlLRg~E-skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~-Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 76 LDKEE--DLVAGTFYHLLRGTE-SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK-DREPNVRIQAVLALS 151 (892)
T ss_pred cCchh--hHHHHHHHHHHhccc-CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHH
Confidence 33222 234445555555554 67899999999999998874444555566666666666654 455688999999999
Q ss_pred HHHhhcCccchhchHHHHHHHHHhh-cCCchhHHHHHHHHHH
Q 000196 179 EMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALR 219 (1874)
Q Consensus 179 ~la~~~p~~~~~~l~~il~~i~~~l-~D~~~~VR~aA~~al~ 219 (1874)
.+-+...+-=.+-.+. +...+ .||+++||.+|...+.
T Consensus 152 rlQ~d~~dee~~v~n~----l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 152 RLQGDPKDEECPVVNL----LKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHhcCCCCCcccHHHH----HHHHHhcCCcHHHHHHHHHhhc
Confidence 8875322211222222 22223 5999999999987553
No 137
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.02 E-value=0.47 Score=58.13 Aligned_cols=213 Identities=26% Similarity=0.311 Sum_probs=132.1
Q ss_pred HHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000196 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1874)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1874)
+.+..++.+++..+|..|+..++.+-. .+.++.+.. ...|+++.||..+..+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~~---------------------------~~av~~l~~-~l~d~~~~vr~~a~~a 97 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELGS---------------------------EEAVPLLRE-LLSDEDPRVRDAAADA 97 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhch---------------------------HHHHHHHHH-HhcCCCHHHHHHHHHH
Confidence 445577788889999998876444311 222333322 4689999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhC-CCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCC----------
Q 000196 585 LYGNRGFDDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS---------- 653 (1874)
Q Consensus 585 l~~~~~f~~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~---------- 653 (1874)
|+. +. .+..++.+...+. |++..||..+...|+.+..... +. .++..++...
T Consensus 98 Lg~---~~----~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--~~--------~l~~~l~~~~~~~a~~~~~~ 160 (335)
T COG1413 98 LGE---LG----DPEAVPPLVELLENDENEGVRAAAARALGKLGDERA--LD--------PLLEALQDEDSGSAAAALDA 160 (335)
T ss_pred HHc---cC----ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--hH--------HHHHHhccchhhhhhhhccc
Confidence 963 11 1355666776666 8999999999999998877552 22 2222222210
Q ss_pred CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL 733 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~ 733 (1874)
.....|..+...++.+.. +...+.+...+.+. ...++..+..+++.+.... ..+.+.
T Consensus 161 ~~~~~r~~a~~~l~~~~~----------~~~~~~l~~~l~~~-----~~~vr~~Aa~aL~~~~~~~--------~~~~~~ 217 (335)
T COG1413 161 ALLDVRAAAAEALGELGD----------PEAIPLLIELLEDE-----DADVRRAAASALGQLGSEN--------VEAADL 217 (335)
T ss_pred hHHHHHHHHHHHHHHcCC----------hhhhHHHHHHHhCc-----hHHHHHHHHHHHHHhhcch--------hhHHHH
Confidence 011234445544444421 22234455666654 5578888888888765432 566778
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000196 734 IVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1874)
Q Consensus 734 l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg 799 (1874)
+...+.|. +..+|..++.+||.+ | ..+-...+...+..+ ++.++.......+
T Consensus 218 l~~~~~~~-~~~vr~~~~~~l~~~----~--------~~~~~~~l~~~l~~~-~~~~~~~~~~~~~ 269 (335)
T COG1413 218 LVKALSDE-SLEVRKAALLALGEI----G--------DEEAVDALAKALEDE-DVILALLAAAALG 269 (335)
T ss_pred HHHHhcCC-CHHHHHHHHHHhccc----C--------cchhHHHHHHHHhcc-chHHHHHHHHHhc
Confidence 88888876 688999999999873 1 134566677767655 4555555444433
No 138
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.02 E-value=11 Score=51.81 Aligned_cols=375 Identities=13% Similarity=0.053 Sum_probs=189.9
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhc-h-h-h--hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHh
Q 000196 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQK-E-L-D--VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRM 1398 (1874)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~-~-~--~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m 1398 (1874)
.+..+.....|..-.|+.+.+..++..... . . . ....+..+.+.|+|++|++.|++.+...++. .+...++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~la 90 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---DDYQRGLI 90 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 356778899999999999999988875442 1 1 1 2334456899999999999999988754443 35567888
Q ss_pred HHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhc-CCCC-cchh-hccccccccCCCCC
Q 000196 1399 RCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRL-DDGD-ESKL-RGLGNTAANGDGSS 1475 (1874)
Q Consensus 1399 ~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~ 1475 (1874)
.++...|+++.-....+..-.. .|+... ....+.+....|+.+.-....+.. ...+ .... ..++..+...
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~--~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~---- 163 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN--LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN---- 163 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----
Confidence 9999999998777666553221 222222 223356677788777755544433 1111 1111 1111111000
Q ss_pred chHHHHHHHHHHhcChhhhHHH-----HHHHHHHhH----------------hhhhHHHHHHh-hcCCCCCCchhhHHHH
Q 000196 1476 NGTFFRAVLLVRRGKVLESYER-----AYSNMVRVQ----------------QLSELEEVIDY-CTLPVGNPVAEGRRAI 1533 (1874)
Q Consensus 1476 ~~~f~~a~~~i~~~~~~esy~r-----ay~~l~~lq----------------~L~EleEii~~-~~~~~~~~~~~~~~~~ 1533 (1874)
+..-.|+..+.+....-.+.+ ....++++. .+.+++..++. ...+. ....
T Consensus 164 -~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~-------~~~~ 235 (765)
T PRK10049 164 -RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD-------ATAD 235 (765)
T ss_pred -CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc-------cchH
Confidence 000011111111000000000 111111111 22233333321 11111 0111
Q ss_pred HHHHHHHHhhhc--cCCHHHHHHHHHHHHhhcCC---cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccccc
Q 000196 1534 IRNMWTERIQGT--KRNVEVWQALLAVRALVLPP---TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR 1608 (1874)
Q Consensus 1534 l~~~W~~Rl~~~--~~~~~~w~~iL~~R~~vl~~---~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~ 1608 (1874)
....+.+|+... ..+++.= +-..+.++-.. ......|+ +.+....|+++.|...+.++...++.. .
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA--~~~~~~ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~----~- 306 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDV--ISEYQRLKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETI----A- 306 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHH--HHHHHHhhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCC----C-
Confidence 222222222211 1122211 11223332211 12245554 889999999999999999887654321 0
Q ss_pred CCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCC
Q 000196 1609 YHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPG 1688 (1874)
Q Consensus 1609 ~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~ 1688 (1874)
..........+..+-.+| +..+|+..++.+......... .+..............++.+|.-....
T Consensus 307 -~~~~~~~~~L~~a~~~~g---~~~eA~~~l~~~~~~~P~~~~-------~~~~~~~~p~~~~~~a~~~~a~~l~~~--- 372 (765)
T PRK10049 307 -DLSDEELADLFYSLLESE---NYPGALTVTAHTINNSPPFLR-------LYGSPTSIPNDDWLQGQSLLSQVAKYS--- 372 (765)
T ss_pred -CCChHHHHHHHHHHHhcc---cHHHHHHHHHHHhhcCCceEe-------ecCCCCCCCCchHHHHHHHHHHHHHHc---
Confidence 001122222222333455 468999998887643211000 000000011112334555666665543
Q ss_pred CCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1689 LDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1689 ~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
...++.+..|.++....|....+|...|..... ++ ....|++.|-+++.+.
T Consensus 373 ---g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~-------~g-------~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 373 ---NDLPQAEMRARELAYNAPGNQGLRIDYASVLQA-------RG-------WPRAAENELKKAEVLE 423 (765)
T ss_pred ---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cC-------CHHHHHHHHHHHHhhC
Confidence 457889999999999999999999888875332 11 2356777777777764
No 139
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.88 E-value=0.025 Score=57.21 Aligned_cols=100 Identities=18% Similarity=0.146 Sum_probs=77.4
Q ss_pred CChHhHHHHHHHHHHHHHhCccccccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELM 731 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~ll 731 (1874)
+++..|+.++.+|+.++...++....++. .+++.+++.+.+. ++.++..++.+++.++...+....... ..++
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l 93 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-----DEEVVKAALWALRNLAAGPEDNKLIVLEAGGV 93 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-----CHHHHHHHHHHHHHHccCcHHHHHHHHHCCCh
Confidence 46788999999999999876555555555 6788888888874 788999999999999876543333333 3489
Q ss_pred HHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 732 PLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 732 p~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
+.+++.+.+. +...|+.|+++|+.+++
T Consensus 94 ~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 94 PKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 9999999876 57899999999998763
No 140
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.2 Score=62.39 Aligned_cols=161 Identities=16% Similarity=0.098 Sum_probs=105.2
Q ss_pred chHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 191 ~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
.....=+.|-..++|.+|.+|....-++.-. .. ....+...+.+++.+. +|.+ .++|.+|..++|.++..
T Consensus 516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alA--y~----GTgnnkair~lLh~aV---sD~n-DDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 516 RQEDADPLIKELLRDKDPILRYGGMYTLALA--YV----GTGNNKAIRRLLHVAV---SDVN-DDVRRAAVIALGFVLFR 585 (929)
T ss_pred hhhhhHHHHHHHhcCCchhhhhhhHHHHHHH--Hh----ccCchhhHHHhhcccc---cccc-hHHHHHHHHHheeeEec
Confidence 3334445555778899999998887655422 11 1123345556665543 3544 48999999999988764
Q ss_pred chhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH
Q 000196 271 TGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGE 347 (1874)
Q Consensus 271 ~~~~~~~~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~ 347 (1874)
.++ .|..++..+ ++-|+.||..+.-++|..|+-.+. ...+..|-....++. .|..|+.+++.
T Consensus 586 dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-------~eAi~lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 586 DPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-------KEAINLLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred Chh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-------HHHHHHHhhhhcChHHHHHHHHHHHHHH
Confidence 443 334344444 578999999999999987765443 223333333333332 48999999999
Q ss_pred HHhhchhhhhhhhHHHHHHHHHhhcCCCC
Q 000196 348 MAGALDGELFHYLPTITSHLREAIAPRRG 376 (1874)
Q Consensus 348 la~~v~~~~~p~l~~i~~~l~~~L~~~~~ 376 (1874)
|.....+...|-...+-+.+...+.+++.
T Consensus 651 Im~Q~t~~~~pkv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 651 IMIQQTEQLCPKVNGFRKQLEKVINDKHE 679 (929)
T ss_pred HHHhcccccCchHHHHHHHHHHHhhhhhh
Confidence 88777777778888888888777766653
No 141
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.78 E-value=0.025 Score=57.15 Aligned_cols=112 Identities=21% Similarity=0.114 Sum_probs=77.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
..++.+...+.|.+..+|..++.+++.++...|......++.-.++.+..+..+ ++++.+..++++|+.++...+....
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHH
Confidence 357777788888899999999999999999876544333331222333333334 5789999999999999987654333
Q ss_pred cchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 679 PYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 679 py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
.+.. .+++.++..+.+. +..++..++.++..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~-----~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSS-----NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcC-----CHHHHHHHHHHHHHhh
Confidence 3332 3677888888764 6778888888877664
No 142
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=7.9 Score=48.04 Aligned_cols=205 Identities=13% Similarity=0.190 Sum_probs=123.1
Q ss_pred cchhchHHHHHHHHHhhcCCc------------hhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCCh
Q 000196 187 VFNVHVAEFVDAIWVALRDPT------------LAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV 254 (1874)
Q Consensus 187 ~~~~~l~~il~~i~~~l~D~~------------~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~ 254 (1874)
.|.||..+++..+...+.-|. -.-|....+.+..+.-++.+.+ .++.++-.+.. ++.+|
T Consensus 333 ~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e------~lk~~~~~l~e---~~~~W 403 (559)
T KOG2081|consen 333 IFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDE------CLKQMYIRLKE---NNASW 403 (559)
T ss_pred HhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHHHcc---CCCch
Confidence 578999999999888776332 2558888888888877766332 23333333332 34479
Q ss_pred hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC
Q 000196 255 HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI 334 (1874)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~ 334 (1874)
+..+|++..+..++......-.+.+.++++.+++. .. ...+|.+++.++|.+.++-... +.++..+..++...+..
T Consensus 404 e~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl-p~-Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~~~~~~~ 479 (559)
T KOG2081|consen 404 EEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL-PE-QAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYIRQGLQL 479 (559)
T ss_pred HHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC-cc-chhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHhhh
Confidence 99999999999988754433333444555555432 12 2239999999999998875432 23566777777666543
Q ss_pred CCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCch--hHHHHHHHHHHhCC-CchHHHHHHHH
Q 000196 335 PAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLE--ALACVGNIARAMGP-VMEPHVRGLLD 406 (1874)
Q Consensus 335 ~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~--a~~~l~~l~~~~g~-~~~p~l~~ll~ 406 (1874)
..--.+|..+...++.++...+.+.++.+...++.......+. .. .++.++.+...... +..+.++++..
T Consensus 480 ~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~--e~a~l~~~~s~i~~~lp~~k~~~~~~el~~ 552 (559)
T KOG2081|consen 480 KRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINE--EAACLLQGISLIISNLPAHKAKIALEELCE 552 (559)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCHhhhhHHHHHHhh
Confidence 3333456666666777776666666776666555433222111 22 33444444444443 34445554443
No 143
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=11 Score=49.57 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=55.3
Q ss_pred CcHHHHHHHHHHHHhhccc----cc-ccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccc-----cchhhH
Q 000196 1041 APVDIRRAAIETLTRLIPR----VQ-VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFT-----IFIPSI 1110 (1874)
Q Consensus 1041 ~~~~vr~~ai~~l~~l~~~----~~-~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~-----~~ip~i 1110 (1874)
....+|..|++.+....+- -| +-|.+....|+++..+...++-+-..|+.|+..+...-|.-.. .++|.+
T Consensus 815 e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l 894 (1014)
T KOG4524|consen 815 ESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWL 894 (1014)
T ss_pred hhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4677899999988765443 12 5677778888999999988999999999999888887663322 255666
Q ss_pred HHHHHh
Q 000196 1111 HKLLLK 1116 (1874)
Q Consensus 1111 ~~~l~~ 1116 (1874)
...+..
T Consensus 895 ~~~~~~ 900 (1014)
T KOG4524|consen 895 KHLCQD 900 (1014)
T ss_pred HHHHHH
Confidence 655444
No 144
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.68 E-value=0.17 Score=54.35 Aligned_cols=164 Identities=22% Similarity=0.267 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhhcC-CcCccchHHHHHHHH-----------HHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchH
Q 000196 615 VREYAISVAGRLSEK-NPAYVLPALRRHLIQ-----------LLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA 682 (1874)
Q Consensus 615 VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~-----------~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~ 682 (1874)
||..|+.+|..+++. .|..+..++..++.+ +++.+..+ ++++.|..|+.++..+.+... +|+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~D-p~~kvR~aA~~~l~~lL~gsk----~~L~ 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKD-PSPKVRAAAASALAALLEGSK----PFLA 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcC-CchhHHHHHHHHHHHHHHccH----HHHH
Confidence 789999999999998 555555666655433 34555566 688999999999999988754 3322
Q ss_pred HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc
Q 000196 683 PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 683 ~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~ 762 (1874)
. ..+... ...+... .-.++|.+ +.++-..++..|+.+.+...-...+++++.+++.+.
T Consensus 77 ~--------Ae~~~~--~~~sFts-lS~tLa~~-----------i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tP 134 (182)
T PF13251_consen 77 Q--------AEESKG--PSGSFTS-LSSTLASM-----------IMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATP 134 (182)
T ss_pred H--------HHhcCC--CCCCccc-HHHHHHHH-----------HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCC
Confidence 1 222110 0111110 11122222 234444566677765555566677999999998876
Q ss_pred ccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCc
Q 000196 763 YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1874)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp 806 (1874)
|.--+-.-.++++..+...+.+ .+..+|.+++-++|.+-+..|
T Consensus 135 Y~rL~~~ll~~~v~~v~~~l~~-~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 135 YHRLPPGLLTEVVTQVRPLLRH-RDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred hhhcCHhHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCC
Confidence 5422222345666666666655 467899999999998765543
No 145
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=95.68 E-value=3.8 Score=51.39 Aligned_cols=63 Identities=17% Similarity=0.095 Sum_probs=52.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~ 1643 (1874)
++....+-.+++|.++|+++.|..++.++....|+ +......+..+++.|+ ..+|....++-+
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----------~~~~~~La~~~~~~g~---~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----------AYDYAWLADALDRLHK---PEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 66788999999999999999999999999876552 3455789999999996 578888777644
No 146
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.68 E-value=0.3 Score=56.05 Aligned_cols=175 Identities=15% Similarity=0.122 Sum_probs=104.4
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchH--HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcch
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVA--EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET 230 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~--~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1874)
.++.++..|+..++...+..|+.+++..+...... ..+. ..++.|...|.+|++.||+.|..|+........+..
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq--~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~- 89 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ--DIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE- 89 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHH--HHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH-
Confidence 46777777876666667777777777765432221 1111 356778889999999999999999987654322111
Q ss_pred hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000196 231 RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1874)
Q Consensus 231 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~ 310 (1874)
....+...+++.+..+ +-+.+.+.+++.+|..|.-. +....-+...+..++.++..++..+|..++.++-.|+.
T Consensus 90 -~Ik~~i~~Vc~~~~s~---~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 90 -QIKMYIPQVCEETVSS---PLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred -HHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 1123455555555542 21235677888787776321 11122223344556677788999999999999988875
Q ss_pred hChhhHHHHHH-HHHHHHHHHhhcCCCCc
Q 000196 311 FLRDRFVTNYL-KICMNHILTVLRIPAER 338 (1874)
Q Consensus 311 ~~~~~f~~~yl-~~~~~~Ll~~L~~~~~R 338 (1874)
. +.. .+..+ .+++..++..+.+...+
T Consensus 164 n-p~~-~~~Ll~~q~~~~~~~Lf~~~~~~ 190 (254)
T PF04826_consen 164 N-PDM-TRELLSAQVLSSFLSLFNSSESK 190 (254)
T ss_pred C-HHH-HHHHHhccchhHHHHHHccCCcc
Confidence 3 221 22222 34455555555544333
No 147
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=11 Score=49.11 Aligned_cols=158 Identities=12% Similarity=0.182 Sum_probs=122.7
Q ss_pred CCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHH
Q 000196 251 NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHIL 329 (1874)
Q Consensus 251 ~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll 329 (1874)
++.|....+.+..+.++++..|+--.+.+...++..-+-. +..++..-.++..+||+++.|-.++- -|++..+|.|+
T Consensus 478 p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~ln~sl~~L~ 555 (982)
T KOG2022|consen 478 PDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYLNPSLPLLF 555 (982)
T ss_pred chHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--cccCchHHHHH
Confidence 3348888999999999998766544455555554443322 22377778899999999998866542 38899999999
Q ss_pred HhhcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC--CchhHHHHHHHHHHhCC-CchHHHHHHHH
Q 000196 330 TVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP--SLEALACVGNIARAMGP-VMEPHVRGLLD 406 (1874)
Q Consensus 330 ~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~--~~~a~~~l~~l~~~~g~-~~~p~l~~ll~ 406 (1874)
..|.+.+.-..+...+..+++....++.||.+.++....+.+...+.+. +..++.|+|.+.....+ ....|+..++.
T Consensus 556 ~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin 635 (982)
T KOG2022|consen 556 QGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN 635 (982)
T ss_pred HHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence 9998877777888889999999999999999999999999886644332 45789999999998875 45668888888
Q ss_pred HHHh
Q 000196 407 IMFS 410 (1874)
Q Consensus 407 ~ll~ 410 (1874)
++++
T Consensus 636 ~il~ 639 (982)
T KOG2022|consen 636 PILS 639 (982)
T ss_pred HHHH
Confidence 8774
No 148
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=7.1 Score=49.54 Aligned_cols=248 Identities=12% Similarity=0.125 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHH--HHH
Q 000196 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI--VRQ 932 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~--~~~ 932 (1874)
...+++.++..++++.- -....+|+.+..+-..... ..-+-++.....+.+++.+-.++-.+..++..++.. +..
T Consensus 458 e~fiv~hv~P~f~s~yg-fL~Srace~is~~eeDfkd--~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~ 534 (970)
T COG5656 458 EYFIVNHVIPAFRSNYG-FLKSRACEFISTIEEDFKD--NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHE 534 (970)
T ss_pred HHHHHHHhhHhhcCccc-chHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhH
Confidence 35667777777887753 2345677666666333322 123445555555666665444666666667777654 345
Q ss_pred hHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhc--------ccc-c--c
Q 000196 933 HIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVL--------SDA-E--R 1001 (1874)
Q Consensus 933 ~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l--------~~~-~--~ 1001 (1874)
.++.++|++|+-+...-+.-+. ..+-.++++++....+++.||.++++..+.+.+ .++ | .
T Consensus 535 k~sahVp~tmekLLsLSn~fei---------D~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s 605 (970)
T COG5656 535 KFSAHVPETMEKLLSLSNTFEI---------DPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSS 605 (970)
T ss_pred HHHhhhhHHHHHHHHhcccccc---------hHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 6778899988888766554331 146678889999999999999999999888733 121 1 0
Q ss_pred -cCc-hhhHHHHHHHHHHHhcchh------hhhh-hhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHH
Q 000196 1002 -CND-YTYVLDILHTLEVFGGTLD------EHMH-LLLPALIRLFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVH 1071 (1874)
Q Consensus 1002 -~~~-~~~~~~il~~l~~~g~~~~------~~~~-~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~ 1071 (1874)
..+ ...+..++.++.++--+++ .|+. .+.|.+-=+++.+ -.+.-+.|++.+...... -.+.|....|..
T Consensus 606 ~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~pimwgi~E 684 (970)
T COG5656 606 VVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIEPIMWGIFE 684 (970)
T ss_pred cccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhhhhhhHHHH
Confidence 111 2335667777766543332 2222 2344443333332 344555666655444332 224455556666
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHHHHHHhccccc---cchhhHHHHHH
Q 000196 1072 HLKLVLDGKND-ELRKDAVDALCCLAHALGEDFT---IFIPSIHKLLL 1115 (1874)
Q Consensus 1072 ~l~~~l~~~~~-~l~~~al~~L~~l~~~~g~~f~---~~ip~i~~~l~ 1115 (1874)
.+..++.+... .--..+..+|..++.-.|..|. .|...+..+..
T Consensus 685 ll~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~ 732 (970)
T COG5656 685 LLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISK 732 (970)
T ss_pred HHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHH
Confidence 66666665542 4456777888888777666664 24444444433
No 149
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.58 E-value=2.9 Score=50.60 Aligned_cols=146 Identities=13% Similarity=0.053 Sum_probs=98.7
Q ss_pred cCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHH
Q 000196 79 ESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMAL 158 (1874)
Q Consensus 79 ~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~ 158 (1874)
.+.-++.|.+.+..+..+..-..-...+....+...+.+=.. +.+..++..|+.+||+++.......-.+....+..++
T Consensus 227 ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~-dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii 305 (533)
T KOG2032|consen 227 TSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKAT-DPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAII 305 (533)
T ss_pred chhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHH
Confidence 345567788888877777543211111223333333222221 3456899999999999987523333335555666666
Q ss_pred hhhcCCCcchhHHHHHHHHHHHHhhcC-ccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 159 DWLRGDRVEYRRFAAVLILKEMAENAS-TVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 159 ~~l~~~~~~~~r~aA~~~l~~la~~~p-~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
-.|-++.++..-+.|+..|..+.+... ..+.+|+-.+...+-....|.++.+|.+|.-+++++...-
T Consensus 306 ~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 306 RGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 666666667788888888888877744 5788888888888888888999999999999998876643
No 150
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.57 E-value=0.85 Score=52.38 Aligned_cols=189 Identities=16% Similarity=0.203 Sum_probs=112.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhccCCCCcc--h-hhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH
Q 000196 562 VEKLLIAAVADADVTVRHSIFSSLYGNRGFD--D-FLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1874)
Q Consensus 562 l~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~--~-~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1874)
+++|+...-...|+.++..++.+++....|. . ...+...++.+...++++++.||..|+.++..++...+. ...+
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en--~~~I 91 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN--QEQI 91 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh--HHHH
Confidence 4556655556778999999888886432221 1 111224578888899999999999999999988765432 2233
Q ss_pred HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh--CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
...+.+.+..+...+-+...+..++++|..+.-. ....+..|++ .+++.+..+ +..++..++.++..|+
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~----~ll~LL~~G-----~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIP----DLLSLLSSG-----SEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHH----HHHHHHHcC-----ChHHHHHHHHHHHHhc
Confidence 4444444444433323456666778888877422 2233444444 445555544 5556667777777776
Q ss_pred Hhcccchhhc-H-HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccc
Q 000196 717 RVGGFGMRQY-I-SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGY 763 (1874)
Q Consensus 717 ~~~g~~~~~~-~-~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~ 763 (1874)
..- .+.+. + .+.++.++..+....+.+.-..++.-+..+-.+.+.
T Consensus 163 ~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 163 ENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred cCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 531 11111 1 245666776676554455556666666666555543
No 151
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=95.48 E-value=5.4 Score=53.51 Aligned_cols=295 Identities=10% Similarity=-0.013 Sum_probs=161.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++.+....|.+..|+..++...... ++.......|..+|.+.|+++.+.-.++.+-.. .+ .......+
T Consensus 81 ~l~~~~l~~g~~~~A~~~l~~~l~~~------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l 154 (656)
T PRK15174 81 RWVISPLASSQPDAVLQVVNKLLAVN------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTL 154 (656)
T ss_pred HHhhhHhhcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 44555667888999998888776532 344566778899999999999998877754321 11 11233458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWD 1444 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd 1444 (1874)
...|++++|...|++.....+++. +..... ..+...|+|+.-....+..... .+..........+.+.+.+|+++
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P~~~---~a~~~~-~~l~~~g~~~eA~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~ 229 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVPPRG---DMIATC-LSFLNKSRLPEDHDLARALLPF-FALERQESAGLAVDTLCAVGKYQ 229 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCCCCH---HHHHHH-HHHHHcCCHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHCCCHH
Confidence 899999999999987765544442 222232 3478889998777666543221 11011122234567888999999
Q ss_pred hHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCC
Q 000196 1445 QMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGN 1524 (1874)
Q Consensus 1445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~ 1524 (1874)
.-.......-.... ......+.-+......++..+-. -+.+..++.++... |+.
T Consensus 230 eA~~~~~~al~~~p--------------~~~~~~~~Lg~~l~~~G~~~eA~---------~~A~~~~~~Al~l~--P~~- 283 (656)
T PRK15174 230 EAIQTGESALARGL--------------DGAALRRSLGLAYYQSGRSREAK---------LQAAEHWRHALQFN--SDN- 283 (656)
T ss_pred HHHHHHHHHHhcCC--------------CCHHHHHHHHHHHHHcCCchhhH---------HHHHHHHHHHHhhC--CCC-
Confidence 87665553311000 00000011111222222221111 12233344444321 211
Q ss_pred CchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 000196 1525 PVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETS 1603 (1874)
Q Consensus 1525 ~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~ 1603 (1874)
..-...+ .+ +.....+++.-... .++.+ +.| ++...+..++.+..+.|+++.|...+.++...+|.
T Consensus 284 ---~~a~~~l--g~---~l~~~g~~~eA~~~--l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-- 350 (656)
T PRK15174 284 ---VRIVTLY--AD---ALIRTGQNEKAIPL--LQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-- 350 (656)
T ss_pred ---HHHHHHH--HH---HHHHCCCHHHHHHH--HHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--
Confidence 1111111 01 00111222211111 12221 233 44677888899999999999999998888765442
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1604 HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1604 ~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
.+.+..-.+..+...|+ ..+|+..++..+..
T Consensus 351 --------~~~~~~~~a~al~~~G~---~deA~~~l~~al~~ 381 (656)
T PRK15174 351 --------TSKWNRYAAAALLQAGK---TSEAESVFEHYIQA 381 (656)
T ss_pred --------chHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh
Confidence 23344445667778884 68899988886653
No 152
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=12 Score=48.18 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchh
Q 000196 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 281 ~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~ 354 (1874)
.+...+=++++|+...|...+..++-.+....+..+. +.+..|...+..++ .|-+|.+.|..+|+..+.
T Consensus 245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred hHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 3444555667888999988888887777665555443 36667777777765 689999999999988765
No 153
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.45 E-value=12 Score=47.94 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcc--CCCchhhHHHHHHHHHHHHHH----hCCCCCCC--ccc--hhHHHHHHHhcCCcchhHHHHHHHH
Q 000196 855 STVAINSLMRILR--DPSLASYHQKVVGSLMFIFKS----MGLGCVPY--LPK--VLPDLFHTVRTCDDYLKDYITWKLG 924 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~--d~s~~~~~~~v~~al~~i~~~----~~~~~~~~--l~~--ilp~ll~~l~~~~~~~~~~~~~~l~ 924 (1874)
...++..|..+|. |+..... ..++.....+++. .|..-.|- +.. ++|.|..+++..++.+--.++..+.
T Consensus 248 g~~~i~~L~~iL~~~~~~~~~~-~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~ 326 (464)
T PF11864_consen 248 GHSAIRTLCDILRSPDPQNKRD-INVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLIN 326 (464)
T ss_pred HHHHHHHHHHHHcccCcccccc-HHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHH
Confidence 3567788999994 3332211 1222222233332 33343443 344 9999999999777655545555555
Q ss_pred HHH
Q 000196 925 TLV 927 (1874)
Q Consensus 925 ~lv 927 (1874)
.++
T Consensus 327 ~ll 329 (464)
T PF11864_consen 327 RLL 329 (464)
T ss_pred HHH
Confidence 555
No 154
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.33 E-value=0.61 Score=55.71 Aligned_cols=113 Identities=22% Similarity=0.244 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
+..+++.|+.-++..+++.||..++++|+-+.-+|..++ .+.++.++..++.++.+||..|++++.++...++..+...
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 557788888888999999999999999974434445444 2467777777766689999999999999988887654433
Q ss_pred HH--------HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh
Q 000196 638 LR--------RHLIQLLTYLEQSSADNKCREESAKLLGCLIRN 672 (1874)
Q Consensus 638 l~--------~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~ 672 (1874)
.. ..+..++...-.+ .+++.+..|++.++-+.-+
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhc
Confidence 33 2344555554444 4677888899988887644
No 155
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.26 E-value=4.9 Score=50.91 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcch
Q 000196 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1874)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~ 147 (1874)
++-.+.+.+|+...|...|..||-+|-.+..- ++..+.|.++.|.+++. .+|...+..+-++|-.|.... +.
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~----~~~~v~kvaDvL~QlL~-tdd~~E~~~v~~sL~~ll~~d---~k 129 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD----NPEHVSKVADVLVQLLQ-TDDPVELDAVKNSLMSLLKQD---PK 129 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh----HHHHHhHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcC---cH
Confidence 33355677899999999999888888877643 34468899999999997 567788888888888776641 22
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC-ccch--hchHH-HHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS-TVFN--VHVAE-FVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p-~~~~--~~l~~-il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
..+..++..+..- ...++..|.-++.+|+.=....+ ..+. .-+.. |++.|-..|.| | +.+-+..+++
T Consensus 130 ~tL~~lf~~i~~~--~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D----V---TaeEF~l~m~ 200 (556)
T PF05918_consen 130 GTLTGLFSQIESS--KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD----V---TAEEFELFMS 200 (556)
T ss_dssp HHHHHHHHHHH-----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT---------HHHHHHHHH
T ss_pred HHHHHHHHHHHhc--ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh----c---cHHHHHHHHH
Confidence 2223333333210 12456678888877765444433 3444 23434 34556677776 2 2333455555
Q ss_pred HHh
Q 000196 224 VIE 226 (1874)
Q Consensus 224 ~i~ 226 (1874)
++.
T Consensus 201 lL~ 203 (556)
T PF05918_consen 201 LLK 203 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 156
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.22 E-value=0.31 Score=64.36 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHH
Q 000196 105 ASKVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMA 181 (1874)
Q Consensus 105 ~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la 181 (1874)
.+.+.+|++++..+... .+|++...+|.-+|||+.-. .++|.++.++-++..+...+....|--++.+++.+|
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i----Sa~fces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI----SAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 45678898887766532 35799999999999999874 788999999999988876677788888999999999
Q ss_pred hhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 182 ENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 182 ~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
-.-|.++.|+- +.+..-|+|+++.||+.|...+..++
T Consensus 990 v~fpnlie~~T----~~Ly~rL~D~~~~vRkta~lvlshLI 1026 (1251)
T KOG0414|consen 990 VRFPNLIEPWT----EHLYRRLRDESPSVRKTALLVLSHLI 1026 (1251)
T ss_pred hhcccccchhh----HHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 99898877654 45668899999999999999887653
No 157
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.19 E-value=2.6 Score=51.90 Aligned_cols=290 Identities=11% Similarity=0.071 Sum_probs=134.1
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---hhhHHHH
Q 000196 203 LRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---EFMMSRY 279 (1874)
Q Consensus 203 l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---~~~~~~~ 279 (1874)
|..++.-|...|+..+..++..-. ..........+++-+...+.++++.+.+..++.++..|++... -|....
T Consensus 110 L~~~d~~i~~~a~~iLt~l~~~~~---~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~- 185 (429)
T cd00256 110 LNRQDQFIVHMSFSILAKLACFGL---AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLAD- 185 (429)
T ss_pred HcCCchhHHHHHHHHHHHHHhcCc---cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHcc-
Confidence 344566777777777766543211 1111122333444444444443334667777788888887432 111111
Q ss_pred HHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHHHHHH--HHHHHHHHHhhcC-CCCc--chHHHHHHHHHhhc
Q 000196 280 REVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFVTNYL--KICMNHILTVLRI-PAER--DSGFIALGEMAGAL 352 (1874)
Q Consensus 280 ~~i~~~ll~~~~~~--~~~vr~~~~~~i~~la~~~~~~f~~~yl--~~~~~~Ll~~L~~-~~~R--~~a~~alg~la~~v 352 (1874)
....+...++.. +...+-.++-++=.++. .++ .++ .+ ..+++.+..+++. .++| ..++.++-++....
T Consensus 186 --~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF-~~~-~~~-~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 186 --GVPTLVKLLSNATLGFQLQYQSIFCIWLLTF-NPH-AAE-VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred --CHHHHHHHHhhccccHHHHHHHHHHHHHHhc-cHH-HHH-hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 223333333322 33444445544544443 222 222 12 4677777777764 3344 35666677766543
Q ss_pred hh-h-hhhhhHHHHH----HHHHhhcCCCCCCCchhHHHHHHHHHHhC----C--CchHHHHHHHHHHHhcCCCHHHHHH
Q 000196 353 DG-E-LFHYLPTITS----HLREAIAPRRGKPSLEALACVGNIARAMG----P--VMEPHVRGLLDIMFSAGLSTTLVDA 420 (1874)
Q Consensus 353 ~~-~-~~p~l~~i~~----~l~~~L~~~~~~~~~~a~~~l~~l~~~~g----~--~~~p~l~~ll~~ll~~~ls~~l~~~ 420 (1874)
.+ + -..+.+.+++ .+.+.|...+ =.++...+-+..+-+.+. + .|..|..++....+.++..-....-
T Consensus 261 ~~~~~~~~~~~~mv~~~l~~~l~~L~~rk-~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 261 VDREVKKTAALQMVQCKVLKTLQSLEQRK-YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred cccchhhhHHHHHHHcChHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 21 0 0112222222 1122222111 011233333333222222 1 3666777665544444210000111
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccC--CC
Q 000196 421 LEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFK--GH 497 (1874)
Q Consensus 421 l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~f~--~~ 497 (1874)
+++=+..+..- .-.++..+..+|.. .+|+...+.||.=+|+| .+. |.
T Consensus 340 W~EN~~kf~~~----~~~llk~L~~iL~~--------------------------s~d~~~laVAc~Dige~vr~~P~gr 389 (429)
T cd00256 340 WRENADRLNEK----NYELLKILIHLLET--------------------------SVDPIILAVACHDIGEYVRHYPRGK 389 (429)
T ss_pred HHHHHHHHHhc----chHHHHHHHHHHhc--------------------------CCCcceeehhhhhHHHHHHHCccHH
Confidence 22111111100 01223333333311 11334567889989988 222 33
Q ss_pred cchhh--HHHHHhhhccCCChHHHHHHHHHhHHhhhc
Q 000196 498 DLLEF--ARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1874)
Q Consensus 498 ~l~~~--v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1874)
..... .++.+..++.|++++||+.|..++.+++..
T Consensus 390 ~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 390 DVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 22211 456788999999999999999988887653
No 158
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.10 E-value=5.2 Score=49.35 Aligned_cols=326 Identities=13% Similarity=0.119 Sum_probs=154.4
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhhcH------HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHH
Q 000196 701 NNGIISGVLVTVGDLARVGGFGMRQYI------SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~------~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~l 774 (1874)
...+...++.-+++|....+....-|. +.....++..|+.+ +......|...|..++...... .+-...+.+
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~ 144 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ-DQFIVHMSFSILAKLACFGLAK-MEGSDLDYY 144 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC-chhHHHHHHHHHHHHHhcCccc-cchhHHHHH
Confidence 344555555555555554332111111 12233344455533 5667788888888887654321 111223446
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccch
Q 000196 775 LGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYY 854 (1874)
Q Consensus 775 l~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 854 (1874)
++.+...+++..+......++++++.+-..++|+...+.
T Consensus 145 ~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~----------------------------------------- 183 (429)
T cd00256 145 FNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL----------------------------------------- 183 (429)
T ss_pred HHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-----------------------------------------
Confidence 667777776554456677778888887766776532110
Q ss_pred HHHHHHHHHHHccCCCchhhHHHHHHHHHHHH-HHhCCCCCCCc--cchhHHHHHHHhcCCcchhHHHH----HHHHHHH
Q 000196 855 STVAINSLMRILRDPSLASYHQKVVGSLMFIF-KSMGLGCVPYL--PKVLPDLFHTVRTCDDYLKDYIT----WKLGTLV 927 (1874)
Q Consensus 855 ~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~-~~~~~~~~~~l--~~ilp~ll~~l~~~~~~~~~~~~----~~l~~lv 927 (1874)
.-.++.|+.+|+..+.. . +.-.+++..+. -+......+.+ ..++|.+...++.+. +|.+. ..+-.++
T Consensus 184 -~~~v~~L~~~L~~~~~~-~-Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~---KEKvvRv~l~~l~Nll 257 (429)
T cd00256 184 -ADGVPTLVKLLSNATLG-F-QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKEST---KEKVIRIVLAIFRNLI 257 (429)
T ss_pred -ccCHHHHHHHHhhcccc-H-HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhh---hHHHHHHHHHHHHHHh
Confidence 00123444445432210 0 11122222221 11111122222 468888888888765 33222 1222222
Q ss_pred HHH-----HH-hHHH----hHHHHHHHHH-HhhcCCCCCcccccccchhHHHHHHHHHHHhhh------hhhccchhhHH
Q 000196 928 SIV-----RQ-HIRK----YLQELFSLIS-ELWSSFSLPATNRTYRGLPVLHLVQQLCLALND------EFRTHLPVILP 990 (1874)
Q Consensus 928 ~~~-----~~-~i~~----y~~~i~~~i~-~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~------~f~~yl~~llp 990 (1874)
... +. ...- =++.++..+. ..|... .+..-+..+...+.+ .|..|..++..
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~De------------dL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s 325 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDE------------DLTDDLKFLTEELKNSVQDLSSFDEYKSELRS 325 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcH------------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence 211 00 0011 1223333332 234422 345555555555543 36667666555
Q ss_pred HHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccc-hhHh-
Q 000196 991 CCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTG-HISS- 1068 (1874)
Q Consensus 991 ~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~~-~~~~- 1068 (1874)
-.++ .+...+++.. ...-...+++.-..++-.+.++++.+.++.+-..|+.=||.+++.....- .+..
T Consensus 326 g~L~-WSp~H~se~F---------W~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~l 395 (429)
T cd00256 326 GRLH-WSPVHKSEKF---------WRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQL 395 (429)
T ss_pred CCcc-CCCCCCCchH---------HHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHc
Confidence 3331 1211111110 01111122333345666777777544334444666777788877532111 1111
Q ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000196 1069 -LVHHLKLVLDGKNDELRKDAVDALCCLAH 1097 (1874)
Q Consensus 1069 -ii~~l~~~l~~~~~~l~~~al~~L~~l~~ 1097 (1874)
.-..+.+.++.+|+++|..|+.|+.-|+.
T Consensus 396 g~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 396 GGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11224477788899999999999987754
No 159
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=12 Score=45.62 Aligned_cols=320 Identities=18% Similarity=0.233 Sum_probs=172.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
-+=+.|.|++|..+|+..++-.++... ....+--||..+|+|+.+.+.+..-.. .+|.+.+.+. -.|.|.=.||+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~p~epi---FYsNraAcY~~lgd~~~Vied~TkALE-l~P~Y~KAl~-RRA~A~E~lg~ 198 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELCPDEPI---FYSNRAACYESLGDWEKVIEDCTKALE-LNPDYVKALL-RRASAHEQLGK 198 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCCch---hhhhHHHHHHHHhhHHHHHHHHHHHhh-cCcHHHHHHH-HHHHHHHhhcc
Confidence 366789999999999999976665221 235678899999999999877754322 2344432221 23445556777
Q ss_pred hhhHHH--HHhhcCCC----Ccchh--hcc---cc----ccccCC---CCCchHHHHHHHHHHh----------------
Q 000196 1443 WDQMAE--YVSRLDDG----DESKL--RGL---GN----TAANGD---GSSNGTFFRAVLLVRR---------------- 1488 (1874)
Q Consensus 1443 Wd~~~~--~~~~~~~~----~~~~~--~~~---~~----~~~~~~---~~~~~~f~~a~~~i~~---------------- 1488 (1874)
.+.--. .+..+.++ ..... +.+ +. ...... .-+...|......+-.
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 665221 11111111 00000 000 00 000000 0011222222221111
Q ss_pred ----------cChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH--hhhccCC----HHHH
Q 000196 1489 ----------GKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTER--IQGTKRN----VEVW 1552 (1874)
Q Consensus 1489 ----------~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~R--l~~~~~~----~~~w 1552 (1874)
....|+|..+|+.+..-.-..|.+.... .+ ....+.+-....-| +.-...| .+..
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n--------~~-d~~le~~A~al~~~gtF~fL~g~~~~a~~d~ 349 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN--------EI-DAELEYMAEALLLRGTFHFLKGDSLGAQEDF 349 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc--------cc-chhHHHHHHHHHHhhhhhhhcCCchhhhhhH
Confidence 1145678888888765554444443221 11 01112222221111 1111111 2233
Q ss_pred HHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchH
Q 000196 1553 QALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKR 1632 (1874)
Q Consensus 1553 ~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~ 1632 (1874)
+.++.+.... ...+|+.+.+--..++-+...+.+.++..++|+ .|.|.+.++.+..-.+ +.
T Consensus 350 ~~~I~l~~~~------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~----------n~dvYyHRgQm~flL~---q~ 410 (606)
T KOG0547|consen 350 DAAIKLDPAF------NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE----------NPDVYYHRGQMRFLLQ---QY 410 (606)
T ss_pred HHHHhcCccc------chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC----------CCchhHhHHHHHHHHH---HH
Confidence 3333332222 234999999999999999999999999888774 3667776766666555 35
Q ss_pred HHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1633 KEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1633 ~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
.+|+...++-+. +. .....+-+.+-++.+.. ..+.+.++.|+++++-.|+..
T Consensus 411 e~A~aDF~Kai~-L~-------------------pe~~~~~iQl~~a~Yr~--------~k~~~~m~~Fee~kkkFP~~~ 462 (606)
T KOG0547|consen 411 EEAIADFQKAIS-LD-------------------PENAYAYIQLCCALYRQ--------HKIAESMKTFEEAKKKFPNCP 462 (606)
T ss_pred HHHHHHHHHHhh-cC-------------------hhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhCCCCc
Confidence 677776665331 11 11223433333444442 247889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000196 1713 KAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1874)
Q Consensus 1713 k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~ 1757 (1874)
.++..+|.. +.. .+-.-.|++.|=++|.+.+
T Consensus 463 Evy~~fAei----LtD----------qqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 463 EVYNLFAEI----LTD----------QQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred hHHHHHHHH----Hhh----------HHhHHHHHHHHHHHHhhcc
Confidence 998877744 221 1233478999999998864
No 160
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.01 E-value=0.035 Score=40.58 Aligned_cols=30 Identities=30% Similarity=0.437 Sum_probs=25.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcC
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1874)
+++.++.+++|++++||.+|+.+||++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 367888999999999999999999999875
No 161
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.96 E-value=0.23 Score=52.89 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHh-CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHH---HHhcccchhhcHHhHHHHH
Q 000196 659 REESAKLLGCLIRN-CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL---ARVGGFGMRQYISELMPLI 734 (1874)
Q Consensus 659 r~~a~~~L~~l~~~-~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L---a~~~g~~~~~~~~~llp~l 734 (1874)
+-.|...+.+++++ .++.+.|.++.++..+...+..+ ++.|...++.+|..| ....|+.+.||+.+++|.+
T Consensus 55 ~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-----~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 55 RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-----DPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVL 129 (183)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 45677788888888 78889999999999999999875 889999999999999 6778999999999999988
Q ss_pred HHH
Q 000196 735 VEA 737 (1874)
Q Consensus 735 ~~~ 737 (1874)
--.
T Consensus 130 n~f 132 (183)
T PF10274_consen 130 NLF 132 (183)
T ss_pred HHH
Confidence 643
No 162
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.96 E-value=18 Score=47.52 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=82.9
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHH
Q 000196 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNH 327 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~ 327 (1874)
+.+.++.+.+.|.=.++..+ ..|+.|...|.++. +....++..+++.+--=+-.+|+..|+.. --+++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M--~~G~dmssLf~dVi----K~~~trd~ElKrL~ylYl~~yak~~P~~~-----lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQM--SLGEDMSSLFPDVI----KNVATRDVELKRLLYLYLERYAKLKPELA-----LLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHH--hcCCChHHHHHHHH----HHHHhcCHHHHHHHHHHHHHHhccCHHHH-----HHHHHH
Confidence 55544434344433333333 34555666555554 44457899999988777777777666432 224455
Q ss_pred HHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 328 ILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 328 Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
+.+-+..++ .|+.|++.+|.+- +...++.+++.|++++.+.++.++..|.-|++.+-+.
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 555555554 4899999998862 2346677888899999888777777888898887764
No 163
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.83 E-value=10 Score=47.73 Aligned_cols=61 Identities=15% Similarity=-0.017 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH--HhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1570 ETWLKFASLCRKSGRISQARSTLVK--LLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1570 ~~wlk~a~laRk~g~~~~a~~~L~~--l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
....-++.++-+.|+++.|...+.+ .....| .+......+.++|..|+ ..+|.+..++.+.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-----------~~~~~~~La~ll~~~g~---~~~A~~~~~~~l~ 398 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQL-----------DANDLAMAADAFDQAGD---KAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 6677899999999999999999984 444433 24556689999999996 5788888776543
No 164
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.79 E-value=0.15 Score=49.55 Aligned_cols=92 Identities=14% Similarity=0.245 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC------CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHH
Q 000196 315 RFVTNYLKICMNHILTVLRIPA------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGN 388 (1874)
Q Consensus 315 ~f~~~yl~~~~~~Ll~~L~~~~------~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~ 388 (1874)
+|.++++=.++..+-..+.+.+ +|..++.++|.+....|+.+..+.|.|+..++.+|..+ +.+..++.||..
T Consensus 3 ~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~--eL~~~al~~W~~ 80 (107)
T smart00802 3 DFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIP--ELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHH
Confidence 3555565566666666665432 47799999999999999889999999999999999543 445789999999
Q ss_pred HHHHhCC-CchHHHHHHHHHH
Q 000196 389 IARAMGP-VMEPHVRGLLDIM 408 (1874)
Q Consensus 389 l~~~~g~-~~~p~l~~ll~~l 408 (1874)
+...+.+ ++.|.++.++-.+
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAI 101 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHH
Confidence 9999886 4555555444333
No 165
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.71 E-value=21 Score=47.02 Aligned_cols=171 Identities=11% Similarity=0.078 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~ 247 (1874)
.++.|.=.++..+..|-. ++.+++.|++.+...+.++++--..=+. +.+...++......+..+.-
T Consensus 35 ~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~--------~yak~~P~~~lLavNti~kD 100 (757)
T COG5096 35 KKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLE--------RYAKLKPELALLAVNTIQKD 100 (757)
T ss_pred HHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HHhccCHHHHHHHHHHHHhh
Confidence 455566667777776644 5566666666666666776654443222 22233445566677778888
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH-HH
Q 000196 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC-MN 326 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~-~~ 326 (1874)
+.+++ ...|+.|+..++.+= +..-.+.++..+.++++|+++.||+.|.-++..+=..+++. .+.. .-
T Consensus 101 l~d~N-~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l-----~~~~g~~ 168 (757)
T COG5096 101 LQDPN-EEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL-----YHELGLI 168 (757)
T ss_pred ccCCC-HHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh-----hhcccHH
Confidence 88885 688888877776541 22233446666778889999999999999998887766653 3333 33
Q ss_pred HHHHhhc-CC--CCcchHHHHHHHHHhhchhhhhhhhHHHHHHH
Q 000196 327 HILTVLR-IP--AERDSGFIALGEMAGALDGELFHYLPTITSHL 367 (1874)
Q Consensus 327 ~Ll~~L~-~~--~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l 367 (1874)
.++..|- .. .....|+.++..+-.. ...+|...+...+
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i 209 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRI 209 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHh
Confidence 3344433 32 2345666666555333 2345554444333
No 166
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.70 E-value=0.5 Score=50.70 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=101.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc-hHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC---c
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL-PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC---E 674 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~-p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~---~ 674 (1874)
..+..+...+++.+..-|-.++.+++.+++.++..++ ..-...+..++..++.. +....++.++..+..+.... +
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556677888999999999999999999999854433 54455555556666665 56677888898988887542 2
Q ss_pred ----cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHH
Q 000196 675 ----RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL 738 (1874)
Q Consensus 675 ----~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l 738 (1874)
+...|.++.+++.+++.+.+ ..+...++.++..+....+..++||..++-..+...+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~-------~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD-------SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 34578999999999998773 2355678889999999999999999998887776654
No 167
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.69 E-value=0.16 Score=49.73 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhhcC--C----CCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHH
Q 000196 316 FVTNYLKICMNHILTVLRI--P----AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389 (1874)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~--~----~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l 389 (1874)
|.+.++=.++.++-..+.+ . .+|..++.+++.+....|+.+.++.|.|+..++.++..+ +.+..+++||..+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~f 81 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHH
Confidence 5555555566666666544 1 157899999999999888888999999999999999554 4456899999999
Q ss_pred HHHhCC-CchHHHHHHHHHHH
Q 000196 390 ARAMGP-VMEPHVRGLLDIMF 409 (1874)
Q Consensus 390 ~~~~g~-~~~p~l~~ll~~ll 409 (1874)
.+.+++ ++.|.++.++-.++
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~ 102 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILL 102 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHH
Confidence 999986 57777766554443
No 168
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.35 E-value=0.77 Score=49.25 Aligned_cols=136 Identities=18% Similarity=0.153 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCC
Q 000196 65 RFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGG 143 (1874)
Q Consensus 65 ~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g 143 (1874)
...+.+..++.++++|++...|-.|+..+..+++..+.+ ..+....|...|..++...+...+.+.|..++.+|....+
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345567778889999999999999999999998763222 2244556677777777655567889999999999977532
Q ss_pred Cc---chH----HHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh
Q 000196 144 AM---TAD----EVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1874)
Q Consensus 144 ~~---~~~----~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l 203 (1874)
.. .-+ .++..++.+++.+++ ......++.+|..+..+-|+.|.|+-.++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 22 212 233444444444432 3456788999999999999999999999887776543
No 169
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.32 E-value=5.1 Score=50.76 Aligned_cols=282 Identities=15% Similarity=0.138 Sum_probs=137.3
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHH
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEV 150 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v 150 (1874)
+..|.+.++++ ...|.-|..-|-.+.... +....+..+-+..+.. +.|..||..|-+.|..++.. .+++|
T Consensus 25 y~~il~~~kg~-~k~K~Laaq~I~kffk~F----P~l~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~----~~~~v 94 (556)
T PF05918_consen 25 YKEILDGVKGS-PKEKRLAAQFIPKFFKHF----PDLQEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKD----NPEHV 94 (556)
T ss_dssp HHHHHHGGGS--HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T------T-H
T ss_pred HHHHHHHccCC-HHHHHHHHHHHHHHHhhC----hhhHHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHh----HHHHH
Confidence 44566777764 444544444444443322 2233445555666665 57899999999999999986 67788
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcch
Q 000196 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET 230 (1874)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1874)
...+..+.+.|+++.. ..+.+.-..|-.+....|.. -+..++..|... ...+..||+.+...|..-+.-+....-
T Consensus 95 ~kvaDvL~QlL~tdd~-~E~~~v~~sL~~ll~~d~k~---tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~ 169 (556)
T PF05918_consen 95 SKVADVLVQLLQTDDP-VELDAVKNSLMSLLKQDPKG---TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELL 169 (556)
T ss_dssp HHHHHHHHHHTT---H-HHHHHHHHHHHHHHHH-HHH---HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS
T ss_pred hHHHHHHHHHHhcccH-HHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHh
Confidence 8888888888885543 23445555555565555541 222333333321 134567999988877654433321111
Q ss_pred hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh----hHHHHHHHHHHHHHHhh--c-----chhHHHH
Q 000196 231 RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF----MMSRYREVAEIVLRYLE--H-----RDRLVRL 299 (1874)
Q Consensus 231 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~----~~~~~~~i~~~ll~~~~--~-----~~~~vr~ 299 (1874)
....+.-.-+.+.+...|.+-.. +.-+ .+-.++.+..-| -.+...++++.+....+ . ....|.+
T Consensus 170 ~p~~E~e~~i~~~ikkvL~DVTa-eEF~----l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idr 244 (556)
T PF05918_consen 170 TPQKEMEEFIVDEIKKVLQDVTA-EEFE----LFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDR 244 (556)
T ss_dssp ---HHHHHHHHHHHHHHCTT--H-HHHH----HHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHhccH-HHHH----HHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHH
Confidence 11123334455555555654221 1111 222444433221 23455566666664331 1 1233322
Q ss_pred H---HHHHhHhHhhh-ChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchh-hhhhhhHHHHHHHHHhhcCC
Q 000196 300 S---ITSLLPRIAHF-LRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDG-ELFHYLPTITSHLREAIAPR 374 (1874)
Q Consensus 300 ~---~~~~i~~la~~-~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~-~~~p~l~~i~~~l~~~L~~~ 374 (1874)
. +-.++|-.+.. ....|+..+...++|.+-.. .+..|..-+..+.+++..+|. +....++.|.+.+...+...
T Consensus 245 li~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l--~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~ 322 (556)
T PF05918_consen 245 LISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDL--PEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSK 322 (556)
T ss_dssp HHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-------HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS---
T ss_pred HHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhC--ChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCC
Confidence 2 23455554432 23567765556666643333 223466777888888877775 33467777888888777533
No 170
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=94.07 E-value=0.3 Score=52.00 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=95.1
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcC-CcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHH---HhCc
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEK-NPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI---RNCE 674 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~-~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~---~~~~ 674 (1874)
.+++.++..+.+....-|-.|.+.+.++.+. .+..++|.+.+++..+-..+.. .+++....++.+|..++ ...+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~t--r~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNT--RDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhhh
Confidence 3578888888888878888888888888888 7778899999988888777765 47888888999999984 4568
Q ss_pred cccccchHHHHHHHHHHhhcc------CCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHH
Q 000196 675 RLIRPYIAPIHKALVARLLEG------TGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1874)
Q Consensus 675 ~~~~py~~~il~~ll~~l~~~------~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp 732 (1874)
+.+.||+..+++.+--..+.. ..-....++..-+-.++..|-+.+|++--..+.-.+|
T Consensus 116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IP 179 (183)
T PF10274_consen 116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINIKYMIP 179 (183)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHHHHhCC
Confidence 899999999988876332221 0001234455666678888888888764443433333
No 171
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.02 E-value=6.4 Score=47.03 Aligned_cols=126 Identities=17% Similarity=0.226 Sum_probs=86.6
Q ss_pred HHHHHHHhCccccccc--hHHHHHHHH-HHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC
Q 000196 665 LLGCLIRNCERLIRPY--IAPIHKALV-ARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG 741 (1874)
Q Consensus 665 ~L~~l~~~~~~~~~py--~~~il~~ll-~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~ 741 (1874)
....+.+.....+.|. +..+++.++ |.++.. ++.++..++.|+|-.+-.... ...+.++.+...++..
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~-----~~~vR~~al~cLGl~~Lld~~----~a~~~l~l~~~~~~~~ 76 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSS-----DPAVRELALKCLGLCCLLDKE----LAKEHLPLFLQALQKD 76 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHhC
Confidence 3444555544445543 346676555 777654 778999999999988776553 4455666777777543
Q ss_pred cchhhHHHHHHHHHHHHhhccccc-ccccc------chHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 742 AAVTKREVAVSTLGQVVQSTGYVI-TPYNE------YPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 742 ~~~~~r~~A~~~Lg~l~~~~~~~i-~p~~~------~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
+..+|..|++++..++...|..+ ..... ...+++.+...+.++ +++++..+...+..+
T Consensus 77 -~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 77 -DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKL 141 (298)
T ss_pred -CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 67899999999999998888653 22221 246888899998777 677887777766654
No 172
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=1 Score=54.51 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=109.3
Q ss_pred HHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHh
Q 000196 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSS 584 (1874)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1874)
+.+..++.+.++-.|-..+.+++..+.-. + =..++..|+..+++|.+.+||++++-+
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GT-----------------g------n~~vv~~lLh~avsD~nDDVrRAAViA 575 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGT-----------------G------NLGVVSTLLHYAVSDGNDDVRRAAVIA 575 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcC-----------------C------cchhHhhhheeecccCchHHHHHHHHh
Confidence 34556666777888877666655444211 0 124566777888999999999999999
Q ss_pred ccCCCCcchhhccHhhHHHHHHHhCCC-CHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHH
Q 000196 585 LYGNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESA 663 (1874)
Q Consensus 585 l~~~~~f~~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~ 663 (1874)
|+- -+|+. ++.+...+..|.|. ++.||-.+.-+||-.+...+.. .-..+|..|.++ ...-.|+.|+
T Consensus 576 lGf-vc~~D----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~L~~D-~~dfVRQ~Am 642 (926)
T COG5116 576 LGF-VCCDD----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEALMYD-TNDFVRQSAM 642 (926)
T ss_pred eee-eEecC----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHHHhhC-cHHHHHHHHH
Confidence 862 22222 34455555666654 7899999988999877766532 334556666666 5667888899
Q ss_pred HHHHHHHHhCccccccchHHHHHHHHHHhhcc
Q 000196 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1874)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1874)
-.++.+.-.+.+.+-|-+..|.+.+.+.+.+.
T Consensus 643 Ia~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 643 IAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 89999988888888888899999888888764
No 173
>PLN03077 Protein ECB2; Provisional
Probab=93.80 E-value=42 Score=46.99 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=49.4
Q ss_pred HHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhh-HHHHHH
Q 000196 1766 LQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQAL-MYPLLV 1844 (1874)
Q Consensus 1766 ~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPqa~-ly~L~v 1844 (1874)
...---|+.++-+-|..++..+.+++.-..-....|-.++- ..|++. +....+.+.+-+.+ --|... .|-++.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~--ac~~~~-~~e~~e~~a~~l~~---l~p~~~~~y~ll~ 698 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLN--ACRIHR-HVELGELAAQHIFE---LDPNSVGYYILLC 698 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcC-ChHHHHHHHHHHHh---hCCCCcchHHHHH
Confidence 33444566666677776676666665422333556777666 235544 43344444433333 345433 344433
Q ss_pred HhcCCcHHHHHHHHHHHHHHhhc
Q 000196 1845 ACKSISNLRRAAAQEVVDKVRQH 1867 (1874)
Q Consensus 1845 ~~kS~~~~R~~~a~~Il~~~~~~ 1867 (1874)
-.- ....|-.-|.++.+.|+..
T Consensus 699 n~y-a~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 699 NLY-ADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHH-HHCCChHHHHHHHHHHHHc
Confidence 211 1223456677788877764
No 174
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=1.2 Score=52.08 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=95.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
+..+...+++.+..+|..|..++|..+.+||......+. ..+..++..+..+ ++...|..|+.+++.++++.+.....
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhcCcHHHHH
Confidence 444455889999999999999999999999964322221 1233344445544 56677889999999999987655444
Q ss_pred chH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 680 YIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 680 y~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
|.. .=...|.+.+.+.. .+..+..-++.-++.+.......-.-.-...++..+..+....+.+.++.|+.++-...
T Consensus 205 fl~~~G~~~L~~vl~~~~---~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 205 FLKLNGYQVLRDVLQSNN---TSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHhcCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 322 11445666666531 24444555566666666543322222333445555555554445668888877766554
Q ss_pred hh
Q 000196 759 QS 760 (1874)
Q Consensus 759 ~~ 760 (1874)
..
T Consensus 282 ~~ 283 (342)
T KOG2160|consen 282 SE 283 (342)
T ss_pred HH
Confidence 43
No 175
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=93.76 E-value=1.3 Score=49.15 Aligned_cols=137 Identities=11% Similarity=0.067 Sum_probs=89.3
Q ss_pred HHHHHHhhhcc----CCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC
Q 000196 1536 NMWTERIQGTK----RNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG 1611 (1874)
Q Consensus 1536 ~~W~~Rl~~~~----~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 1611 (1874)
..|.+|+..-. ..-+.-+-+...+..+-.-.++.+.|..++.+....|+++.|..++.++..++|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---------- 105 (198)
T PRK10370 36 RAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---------- 105 (198)
T ss_pred HHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------
Confidence 45666654322 1122233344555555333466899999999999999999999999999988763
Q ss_pred ChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000196 1612 PPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1874)
Q Consensus 1612 ~~~v~~e~~k~lw~~-g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~ 1690 (1874)
.+.+...++..+|.+ |+. ...+|...+++.+..-..+ ..-.-++|-++...|+
T Consensus 106 ~~~~~~~lA~aL~~~~g~~-~~~~A~~~l~~al~~dP~~---------------~~al~~LA~~~~~~g~---------- 159 (198)
T PRK10370 106 NAELYAALATVLYYQAGQH-MTPQTREMIDKALALDANE---------------VTALMLLASDAFMQAD---------- 159 (198)
T ss_pred CHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCCC---------------hhHHHHHHHHHHHcCC----------
Confidence 478888899987655 431 1378999998876532110 1112234444444444
Q ss_pred CCCHHHHHHHHHHHHhhcccc
Q 000196 1691 DESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
.++.+.+|+++.+..|..
T Consensus 160 ---~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 160 ---YAQAIELWQKVLDLNSPR 177 (198)
T ss_pred ---HHHHHHHHHHHHhhCCCC
Confidence 567889999998887753
No 176
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=93.73 E-value=28 Score=44.67 Aligned_cols=161 Identities=16% Similarity=0.105 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc-cccc----h-HHHHH
Q 000196 613 FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPY----I-APIHK 686 (1874)
Q Consensus 613 ~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py----~-~~il~ 686 (1874)
.++|..---.+.+++...|..++..+|+.+...+...+. ++...-|.|...+-.+.+..+.. +.-. . .+++.
T Consensus 413 ~e~RkkLk~fqdti~~idpsl~l~~Ir~slS~al~ns~e--~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~ 490 (980)
T KOG2021|consen 413 EEVRKKLKNFQDTIVVIDPSLFLNNIRQSLSAALMNSKE--ESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLF 490 (980)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhccccccccccCccccHHHHHH
Confidence 367887777888888888887777778766555543322 34566678899998888765421 1100 0 11222
Q ss_pred HHHHHhhccCCCC-CChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC-----cchhhHHHHHHHHHHHHhh
Q 000196 687 ALVARLLEGTGIN-ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG-----AAVTKREVAVSTLGQVVQS 760 (1874)
Q Consensus 687 ~ll~~l~~~~~~~-~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~-----~~~~~r~~A~~~Lg~l~~~ 760 (1874)
.+++.+-...... .++.|..-..+.+-.-. .|-.+-.+-+|.++.++-|. .+..+|..|-.-+.+++..
T Consensus 491 ~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~-----kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKl 565 (980)
T KOG2021|consen 491 LNELLLMTSQVLAHDHELVQLLFMELIVRYN-----KFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKL 565 (980)
T ss_pred HHHHHHHHcccccCCchHHHHHHHHHHHHHH-----HHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHH
Confidence 2222222111111 23444433333332211 23333455677777776542 2456888888888888888
Q ss_pred ccccccccccchHHHHHHHHHh
Q 000196 761 TGYVITPYNEYPQLLGLLLKML 782 (1874)
Q Consensus 761 ~~~~i~p~~~~p~ll~~Ll~~l 782 (1874)
....+.||.+ +++..+-..|
T Consensus 566 Lkkqlvpfie--~iln~iqdlL 585 (980)
T KOG2021|consen 566 LKKQLVPFIE--EILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHH--HHHHHHHHHH
Confidence 7766677653 5566555555
No 177
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=21 Score=46.08 Aligned_cols=203 Identities=21% Similarity=0.283 Sum_probs=117.6
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc-chHHHHHHHHHHHHHhhCC--CChHhHHHHHHHHHHHHHhC-
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLIQLLTYLEQSS--ADNKCREESAKLLGCLIRNC- 673 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~~~l~~l~~~~--~~~~~r~~a~~~L~~l~~~~- 673 (1874)
|.-+..++..+.|....||..++-.|..+++.||..- +-.+......++..++..+ +..-+-+.++.+|-.+.+..
T Consensus 165 P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 165 PMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred chhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 3457778888999999999999999999999998531 1223444444444444431 12245677888888888753
Q ss_pred --ccccc--cchHHHHHHHHHH-hhccCCCCCChhHHHHHHHHHH---HHHHhcccchhh-------cHHhHHHHHHHHH
Q 000196 674 --ERLIR--PYIAPIHKALVAR-LLEGTGINANNGIISGVLVTVG---DLARVGGFGMRQ-------YISELMPLIVEAL 738 (1874)
Q Consensus 674 --~~~~~--py~~~il~~ll~~-l~~~~~~~~~~~v~~~~~~~l~---~La~~~g~~~~~-------~~~~llp~l~~~l 738 (1874)
..+|+ .|++.+...|--. ..++.....++.-..++..++. .++.-+...-.. .-..++..++..+
T Consensus 245 SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il 324 (970)
T KOG0946|consen 245 SNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTIL 324 (970)
T ss_pred chhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHH
Confidence 23444 4555544332111 2221111123333344443433 333221111011 1124566666666
Q ss_pred hcC-cchhhHHHHHHHHHHHHhhcc-------cccccccc--chHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 739 LDG-AAVTKREVAVSTLGQVVQSTG-------YVITPYNE--YPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 739 ~d~-~~~~~r~~A~~~Lg~l~~~~~-------~~i~p~~~--~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
..+ -..+++..++-+++.++++.. .+..|+.. .|.++=.++.+....++...|.+++.|+-.
T Consensus 325 ~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s 396 (970)
T KOG0946|consen 325 MHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRS 396 (970)
T ss_pred cCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHH
Confidence 533 345677788888888877653 34456654 466777777777666788999999998755
No 178
>PF05536 Neurochondrin: Neurochondrin
Probab=93.43 E-value=33 Score=44.55 Aligned_cols=186 Identities=16% Similarity=0.166 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhCcc-ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHHH
Q 000196 660 EESAKLLGCLIRNCER-LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEA 737 (1874)
Q Consensus 660 ~~a~~~L~~l~~~~~~-~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~~ 737 (1874)
.-|..+|..++. -++ .-.|-+..-++.++..+.... ...+...++.++..++.. ++.-...+ ...+|.+++.
T Consensus 75 ~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s----~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 75 SLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSS----DLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCC----chhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHH
Confidence 345555555554 122 123556777888888887652 236667778888777732 22111111 2467777877
Q ss_pred HhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh----cCCCCHHHHHHHHHHHHHhcccCccchhhhc
Q 000196 738 LLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREVLKVLGIMGALDPHAHKRNQ 813 (1874)
Q Consensus 738 l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l----~~~~~~~vr~~al~~lg~lgaldp~~~~~~~ 813 (1874)
+.+ .....+.|+..+..++...+... ..+.+..+..++..+ +.. ....+-+.+..++.+=.-.|..
T Consensus 149 ~~~--~~~~~E~Al~lL~~Lls~~~~~~--~~~~~~~l~~il~~La~~fs~~-~~~~kfell~~L~~~L~~~~~~----- 218 (543)
T PF05536_consen 149 IPN--QSFQMEIALNLLLNLLSRLGQKS--WAEDSQLLHSILPSLARDFSSF-HGEDKFELLEFLSAFLPRSPIL----- 218 (543)
T ss_pred HHh--CcchHHHHHHHHHHHHHhcchhh--hhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhcCcCCcc-----
Confidence 765 34578899999998887766432 223334444443333 322 2344555555555431111000
Q ss_pred ccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC
Q 000196 814 QLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG 892 (1874)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~ 892 (1874)
+ .. .+ ...-+...+...|..+|+..-....+..+......++...|.+
T Consensus 219 --~----------------~~------------~~-~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 219 --P----------------LE------------SP-PSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred --c----------------cc------------cC-ChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 0 00 01 1112456777888899987655555666677777777777654
No 179
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=1 Score=51.16 Aligned_cols=144 Identities=15% Similarity=0.109 Sum_probs=94.8
Q ss_pred HHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHH
Q 000196 243 ATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLK 322 (1874)
Q Consensus 243 ~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~ 322 (1874)
++...|.+. +|+..-.++-.+..|.+...+-+.+.+.+++-.|+.-+++....|-+++|.+++.+..+-.....+ -++
T Consensus 92 ~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~-~ld 169 (334)
T KOG2933|consen 92 QALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ-ELD 169 (334)
T ss_pred HHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 344455554 599888889999999887778899999999999998888888889999999999887654332221 233
Q ss_pred HHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhC
Q 000196 323 ICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1874)
Q Consensus 323 ~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g 394 (1874)
.++-.|+.--...+ .|..|-.+|-.+...+.. ..+++.++.++....++.+..+..|+......+|
T Consensus 170 ~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 170 DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 33333322111111 367888888887777654 2244455555555555555566667776666655
No 180
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=93.16 E-value=2.3 Score=48.11 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCC
Q 000196 45 LALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRD 124 (1874)
Q Consensus 45 ~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d 124 (1874)
-.++.+.....++...+ ++......++.+++....|..|+..++...... + .....++...++..++
T Consensus 33 p~lr~lak~~~~~~~~~------~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~--~-----~~~~~~~~~~~~~~~~ 99 (213)
T PF08713_consen 33 PDLRKLAKDIYKELKLS------EELYELADELWESGYREERYLALLILDKRRKKL--T-----EEDLELLEKWLPDIDN 99 (213)
T ss_dssp HHHHHHHHHHHHHHCTS------HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHhhcccc------hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhh--h-----HHHHHHHHHHhccCCc
Confidence 34666666666665544 334455567888888888888888887765332 1 1255677777776666
Q ss_pred hHHHHHH-HHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh
Q 000196 125 REILVLA-SKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL 203 (1874)
Q Consensus 125 ~~v~~~a-a~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l 203 (1874)
-.+.+.. ..+++.+.... +...+.+.+|+.++..+.+|.|.+..+..+.. .+++.++..+-..+
T Consensus 100 W~~~D~~~~~~~~~~~~~~--------~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~ 164 (213)
T PF08713_consen 100 WATCDSLCSKLLGPLLKKH--------PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALL 164 (213)
T ss_dssp HHHHHHHTHHHHHHHHHHH--------GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCT
T ss_pred chhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHc
Confidence 6777766 56677765431 23466788999988888888776665443332 67788888888999
Q ss_pred cCCchhHHHHHHHHHHHHH
Q 000196 204 RDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 204 ~D~~~~VR~aA~~al~~~~ 222 (1874)
.|++..||.|...+|+.+.
T Consensus 165 ~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 165 KDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp TGS-HHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 181
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=59 Score=46.54 Aligned_cols=242 Identities=16% Similarity=0.129 Sum_probs=150.6
Q ss_pred HHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc-hhc
Q 000196 113 NYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF-NVH 191 (1874)
Q Consensus 113 ~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~-~~~ 191 (1874)
.++.+.+. ..++-.+-.++++++||+..-| .+.|+....+..+.-+.+-++...|..-.++++-+-...+... .++
T Consensus 879 ~l~~~sl~-~~~p~~rc~~~ea~arLaq~v~--~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 879 TLIVNSLI-NPNPKLRCAAAEALARLAQVVG--SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHhhhhc-cCChHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 34555553 4578888889999999998643 3457777788888888777888899998899988887765533 357
Q ss_pred hHHHHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh-hccCCCC-hhHHHHHHHHH----
Q 000196 192 VAEFVDAIWVALRDPTL-AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD-GLGRNAP-VHSIHGSLLAV---- 264 (1874)
Q Consensus 192 l~~il~~i~~~l~D~~~-~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~-~l~~~~~-~~~~~~al~~l---- 264 (1874)
+.+-+..++...+|+++ .|+.-+..|+..+++-.. + ..--+....+.-+.. .+..+.. .++..+-=.++
T Consensus 956 l~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~---p-~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 956 LNTSVSILLALATDSTSPVVQTWSLHALALILDSSG---P-MFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred cccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCC---c-eehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 77767777888899986 999999998886654221 1 111111111111111 1122111 11111111122
Q ss_pred --HHHHHcchhhhHHHH--------H-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000196 265 --GELLRNTGEFMMSRY--------R-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1874)
Q Consensus 265 --~~ll~~~~~~~~~~~--------~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1874)
++++.+.|+.+.+.. + .......-.+.+.++.++.+++.++-.+.-|++... .++.+++.+...|.
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~---n~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV---NLDSLVLQLCSLLS 1108 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc---cHHHHHHHHHHHhc
Confidence 255555444333322 2 222222233467799999999999999998888632 35778888888776
Q ss_pred CCC--CcchHHHHHHHHHhhchhhhhhhhHHHH
Q 000196 334 IPA--ERDSGFIALGEMAGALDGELFHYLPTIT 364 (1874)
Q Consensus 334 ~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~ 364 (1874)
..- -|.+++.|+..++..--+....|-.-+.
T Consensus 1109 s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~ 1141 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLVQREASEVCEYAQLLA 1141 (2067)
T ss_pred chhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhh
Confidence 543 5788899999887766555555544333
No 182
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.97 E-value=9.7 Score=45.75 Aligned_cols=196 Identities=17% Similarity=0.166 Sum_probs=109.1
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCc---chHHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcC
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAM---TADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAENAS 185 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~-~g~~---~~~~v~~~~~~~~~~l~-~~~~~~~r~aA~~~l~~la~~~p 185 (1874)
+...|...++ .-|.+.++-++..++.+... .|+. ..+++....+.++.+|- +......-.-+-.+|++.+.+-+
T Consensus 77 ll~~Li~~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 77 LLYLLIRNLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp HHHHHHHTGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence 3344555665 35899999999999999875 2332 35566655555666653 22222222333345555554311
Q ss_pred --c-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHH
Q 000196 186 --T-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLL 262 (1874)
Q Consensus 186 --~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~ 262 (1874)
. .++ ++.+..++.-+..++-.|-..|...++.++..-..-....-...|..++.....-+.++ ...++.-|+.
T Consensus 156 l~~~iL~---~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslk 231 (335)
T PF08569_consen 156 LAKIILY---SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLK 231 (335)
T ss_dssp HHHHHHT---SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHH
T ss_pred HHHHHhC---cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHH
Confidence 1 121 12233344566788888844444444444321110001122233455555444444454 4889999999
Q ss_pred HHHHHHH--cchhhhHHHHHH--HHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000196 263 AVGELLR--NTGEFMMSRYRE--VAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1874)
Q Consensus 263 ~l~~ll~--~~~~~~~~~~~~--i~~~ll~~~~~~~~~vr~~~~~~i~~la~~ 311 (1874)
.||+++. ..-..|..|..+ -+..++..+++++..||-.+.+++....+.
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999987 334567766654 455777888999999999999999876653
No 183
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.95 E-value=39 Score=44.60 Aligned_cols=103 Identities=17% Similarity=0.105 Sum_probs=69.7
Q ss_pred ccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHH------HHHhcCHH
Q 000196 1298 CRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESW------YEKLQRWD 1371 (1874)
Q Consensus 1298 c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~------~E~lg~W~ 1371 (1874)
.|.+..|...+..-+.+ ++.....+..|..||.+.|+..-+.--+..+. ++..+-.+.| .+++|+|+
T Consensus 152 rg~~eeA~~i~~EvIkq------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQ------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred hCCHHHHHHHHHHHHHh------CccchhhHHHHHHHHHHcccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHH
Confidence 36777888777655543 34446788999999999998776553333222 2222333555 69999999
Q ss_pred HHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000196 1372 DALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1874)
Q Consensus 1372 ~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1874)
+|--||.+.++..+.. ++....++.=+.++|+...-
T Consensus 225 qA~~cy~rAI~~~p~n---~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSN---WELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHHHHHHHHHhcCCcc---hHHHHHHHHHHHHhChHHHH
Confidence 9999999999764432 56666677777777776433
No 184
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=0.64 Score=52.79 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=106.8
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
.|...+..|.+++.+..-.++..+.+|+.++|..+.+.|.++++..+..+++- . +..-..|+.+++++.......+..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl-R-S~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL-R-SAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh-H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888899999999999999999999999999999999999988764 2 334557888999999887766666
Q ss_pred chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
-.+..+..|+.+.... +.-|+..+-.+|..+...... ..+++.++..++.. ...+|..+..++...+.
T Consensus 167 ~ld~lv~~Ll~ka~~d-----nrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~-n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQD-----NRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHS-NPRVRAKAALCFSRCVI 234 (334)
T ss_pred HHHHHHHHHHhhhccc-----chHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhh-chhhhhhhhccccccce
Confidence 6666666666665543 556777777888777665432 24566666667654 45566666555554443
Q ss_pred hc
Q 000196 760 ST 761 (1874)
Q Consensus 760 ~~ 761 (1874)
..
T Consensus 235 rl 236 (334)
T KOG2933|consen 235 RL 236 (334)
T ss_pred ec
Confidence 33
No 185
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.76 E-value=51 Score=44.89 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=94.3
Q ss_pred HHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh-cchhhHHHHHH-HHHHHHHhhccCCC
Q 000196 175 LILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK-RETRWRVQWYY-RMFEATQDGLGRNA 252 (1874)
Q Consensus 175 ~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~-r~~~~~~~~~~-~i~~~~~~~l~~~~ 252 (1874)
.+|.++++..|..+.+++..+++ .+...+...|.+-.++++........ .+.....+-.. .+++.+...+.+-+
T Consensus 297 ~fL~elS~~~P~l~~~~l~~lv~----lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvs 372 (1251)
T KOG0414|consen 297 NFLVELSERVPKLMLRQLTLLVD----LLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVS 372 (1251)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH----hcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhccc
Confidence 47788999999999999888887 45566788999988888776543321 11122222233 36777777777764
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh
Q 000196 253 PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR 313 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~ 313 (1874)
.-+|--++.++..|.+...... ....++...+.+.+.+++..||+.|+.++..+-...|
T Consensus 373 -a~vRskVLqv~~~l~~~~s~p~-~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 373 -AYVRSKVLQVFRRLFQQHSIPL-GSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred -HHHHHHHHHHHHHHHHccCCCc-cHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 5678888888888877433222 2466788888888999999999999998887654444
No 186
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.70 E-value=32 Score=42.48 Aligned_cols=281 Identities=11% Similarity=0.147 Sum_probs=147.7
Q ss_pred ChhhhhhHHHHHhHhhccccCc-----chhHHHHHHHHHHhhccc-----C-CChHHHHHHHHHHHHHhhh---CCCcch
Q 000196 82 DAAENLGALRAIDELIDVALGE-----NASKVSKFSNYMRTVFEV-----K-RDREILVLASKVLGHLARA---GGAMTA 147 (1874)
Q Consensus 82 ~~~~r~~~i~ai~~li~~~~~~-----~~~~~~~~~~~L~~~l~~-----~-~d~~v~~~aa~~lg~l~~~---~g~~~~ 147 (1874)
+-..|.-|-..+...+....+. ...++..+..++++=+.. . .|.++...|-+++|.+..+ ...+..
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 3344444444444444332111 133445555555544432 1 2678999999999998765 246778
Q ss_pred HHHHHHHHHHHhhhcCCCcc-hhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHH
Q 000196 148 DEVEFQVKMALDWLRGDRVE-YRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLR 223 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~-~~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~--~~~VR~aA~~al~~~~~ 223 (1874)
++..+.+..+++-+...... ..-..++.+|+. ++ .|..+.......+-.++..+.++ ...|-..+..++..++.
T Consensus 86 d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~ 163 (372)
T PF12231_consen 86 DFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLS 163 (372)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHH
Confidence 88888999999988644332 222333444332 23 44566666666555556666653 33443334444444433
Q ss_pred HHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 000196 224 VIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITS 303 (1874)
Q Consensus 224 ~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~ 303 (1874)
...+.-...-..|++.+++.+++..+ +++..|+.++..+....+ ++..+-+.+..
T Consensus 164 q~p~~M~~~~~~W~~~l~~~l~~~~k-----~ir~~a~~l~~~~~~~l~--------------------~~~~~s~~~~~ 218 (372)
T PF12231_consen 164 QFPQQMIKHADIWFPILFPDLLSSAK-----DIRTKAISLLLEAKKCLG--------------------PNKELSKSVLE 218 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcch-----HHHHHHHHHHHHHHHHhC--------------------hhHHHHHHHHH
Confidence 22211112334699999888876332 345544433332221111 12222222222
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhh-h--hhhhHHHHHHHHHhhcCCCCCCCc
Q 000196 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGE-L--FHYLPTITSHLREAIAPRRGKPSL 380 (1874)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~-~--~p~l~~i~~~l~~~L~~~~~~~~~ 380 (1874)
.+..-- .+..|+ +.+...|...+...++-..|.+.=+.+...+|.. + -+|++..+.....++...++..+.
T Consensus 219 ~~~~~~--~~~~~~----~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~ 292 (372)
T PF12231_consen 219 DLQRSL--ENGKLI----QLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKI 292 (372)
T ss_pred Hhcccc--ccccHH----HHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHH
Confidence 222110 111233 2333444444443222234444444444444542 2 378899999999999776655667
Q ss_pred hhHHHHHHHHHHhCC
Q 000196 381 EALACVGNIARAMGP 395 (1874)
Q Consensus 381 ~a~~~l~~l~~~~g~ 395 (1874)
.|+.||..+.....+
T Consensus 293 ~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 293 QAFKAWRRLIYASNP 307 (372)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999887665
No 187
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=92.68 E-value=2 Score=50.79 Aligned_cols=174 Identities=17% Similarity=0.255 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHhCCCCC-ChHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCC
Q 000196 1245 SQKHLVQSLEMAFSSPNI-PPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDAN 1323 (1874)
Q Consensus 1245 ~~~~l~~~l~~~l~~~~~-p~~i~~~ll~l~e~m~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~ 1323 (1874)
.++..+..++..+..+.. .+++++.+. +.+-...|.|..||.+++.. .
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~--------------------A~i~~~~~~~~~AL~~l~~~-----------~ 129 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLA--------------------ATILFHEGDYEEALKLLHKG-----------G 129 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHH--------------------HHHHCCCCHHHHHHCCCTTT-----------T
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHH--------------------HHHHHHcCCHHHHHHHHHcc-----------C
Confidence 355667777777766543 233333322 23334566777888877543 1
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhch----hhhhhcHHHHH-Hhc--CHHHHHHHHHHHHhccCCCchhHHhHhh
Q 000196 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQKE----LDVQLKESWYE-KLQ--RWDDALKAYTNKASQASNPHIVLEATLG 1396 (1874)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~~~~~~~~~~E-~lg--~W~~Al~~y~~~~~~~~~~~~~~~~~~g 1396 (1874)
..+++-..+.||-.+|++|.|...++..++. .-.++.+.|.- ..| ..++|.-.|++..+..+.. +....|
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t---~~~lng 206 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST---PKLLNG 206 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S---HHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC---HHHHHH
Confidence 2466677899999999999999999876532 22455566632 223 5889999999865432221 455689
Q ss_pred HhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCCh-hhHHHHHhhcC
Q 000196 1397 RMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEW-DQMAEYVSRLD 1454 (1874)
Q Consensus 1397 ~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~W-d~~~~~~~~~~ 1454 (1874)
+..|...+|+|++-....++-... ++.....++. .+-++..+|+. +..++|++.+.
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~-~~~~~d~LaN-liv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEK-DPNDPDTLAN-LIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHH-HHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-ccCCHHHHHH-HHHHHHHhCCChhHHHHHHHHHH
Confidence 999999999998777666654322 2333333343 45688899999 77888988775
No 188
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.53 E-value=13 Score=43.03 Aligned_cols=233 Identities=16% Similarity=0.191 Sum_probs=130.3
Q ss_pred CcchhHHHHHHHHHHHHhhcCc-cc-hhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 000196 165 RVEYRRFAAVLILKEMAENAST-VF-NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFE 242 (1874)
Q Consensus 165 ~~~~~r~aA~~~l~~la~~~p~-~~-~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~ 242 (1874)
.++..|.-|+.+|..+.+..|. .+ ...+.-+++-....|.|.. .+..+ ..++.++... . .........++.
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~-l~gl~~L~~~-~----~~~~~~~~~i~~ 83 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPA-LKGLLALVKM-K----NFSPESAVKILR 83 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHH-HHHHHHHHhC-c----CCChhhHHHHHH
Confidence 4567889999999999999885 34 3467777777778885544 34444 5555554421 1 111222334444
Q ss_pred HHHhhccCCC-ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHh-hhChhhHHHH
Q 000196 243 ATQDGLGRNA-PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIA-HFLRDRFVTN 319 (1874)
Q Consensus 243 ~~~~~l~~~~-~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la-~~~~~~f~~~ 319 (1874)
.+.+...-+. ....|.....++..+++...+.+...=.+.+..++... ..++|.--..+..+++.+. .|...+|.+.
T Consensus 84 ~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~ 163 (262)
T PF14500_consen 84 SLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAED 163 (262)
T ss_pred HHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 4443222111 24568888889988888654444322233444444433 3567766666777777765 3554556655
Q ss_pred HHHHHHHHHHHhhcCCC-C-----cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 320 YLKICMNHILTVLRIPA-E-----RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 320 yl~~~~~~Ll~~L~~~~-~-----R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
+++.+..|.==..+.+. + |..--.+|.. +..... .|-+..++.+.+-|..........+++++...+..+
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~-cl~s~~---~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRN-CLSSTP---LFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHH-HhcCcH---hhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 54444444322233222 1 1111111111 111112 244556677777775554445567888888888899
Q ss_pred CC-CchHHHHHHHHHH
Q 000196 394 GP-VMEPHVRGLLDIM 408 (1874)
Q Consensus 394 g~-~~~p~l~~ll~~l 408 (1874)
|. .+.||+..+-..|
T Consensus 240 ~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 240 GADSLSPHWSTIWNAL 255 (262)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 87 5788887766554
No 189
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=15 Score=43.39 Aligned_cols=183 Identities=17% Similarity=0.178 Sum_probs=106.5
Q ss_pred cCCChhhhhhHHHHHhHhhccccCcchhHHHHH--HHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH-HHH
Q 000196 79 ESNDAAENLGALRAIDELIDVALGENASKVSKF--SNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVK 155 (1874)
Q Consensus 79 ~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~--~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~-~~~ 155 (1874)
.+.+..+|.+++--|.-++.-- ++++.+..+ ..-|...+. ..|.++|..|++++|..+......+..+++. -+.
T Consensus 93 ~s~~le~ke~ald~Le~lve~i--DnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDI--DNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhh--hhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 4578889999988888886532 233333322 223333554 4689999999999999988632222222222 234
Q ss_pred HHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh--chHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHHHHhhcchh
Q 000196 156 MALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV--HVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETR 231 (1874)
Q Consensus 156 ~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~--~l~~il~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1874)
.++..+..+.+...|..|+.+++.+..+-+..... -++. ...+..+|.++ +...+.-|..-++.++..-. .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~--s-- 244 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK--S-- 244 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh--h--
Confidence 44455556777788999999999999886542221 2222 45566788774 45555666666665543211 1
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000196 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1874)
Q Consensus 232 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1874)
.....-...++.....+..+.++++...++.++-.++.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 11111122333333334444446667777766655554
No 190
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.33 E-value=56 Score=48.09 Aligned_cols=359 Identities=11% Similarity=0.089 Sum_probs=184.3
Q ss_pred HHHHHHHHHhhhcCCcCcc---chHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcc--ccc--cchHHHHHHH
Q 000196 616 REYAISVAGRLSEKNPAYV---LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER--LIR--PYIAPIHKAL 688 (1874)
Q Consensus 616 R~~a~~~l~~l~~~~p~~v---~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~--~~~--py~~~il~~l 688 (1874)
|.-++.-|..++.+|..-+ .+.+-.++.+.+...-.. .+...+..|...|..++-..-+ .+. .|-..++..+
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~-~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCS-ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence 4455556666666665432 233333444443333222 2344555566656566543211 111 1234566777
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccc--c
Q 000196 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI--T 766 (1874)
Q Consensus 689 l~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i--~ 766 (1874)
...+... .+..++.-++.|+..|....++.+..=-..++.++-.+..+.+ ...=..|..++..++...-..+ .
T Consensus 1188 e~im~~s----~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~-e~iV~lAFetl~~I~~d~f~~l~~~ 1262 (1780)
T PLN03076 1188 VIVMRKS----NAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDH-KNIVLLAFEIIEKIIREYFPYITET 1262 (1780)
T ss_pred HHHHHhc----CchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHhhhhhcccc
Confidence 6666643 3678999999999999988888887777788888877776553 3344568888888775432222 1
Q ss_pred ccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-c--CccchhhhcccCCCcccccccCCCCCCCCCCcccccccc
Q 000196 767 PYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA-L--DPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDL 843 (1874)
Q Consensus 767 p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga-l--dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 843 (1874)
+..-+..++.++.++.+...+..+-..|+..+..++. + .+.... ......+...+.+.... ...... ..+
T Consensus 1263 ~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~----~~~~~~~~~~~~s~~~~--~~~~~~-~~~ 1335 (1780)
T PLN03076 1263 ETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS----SRNKDKEAPPSSPQSGK--DGKQES-GEF 1335 (1780)
T ss_pred chhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc----ccccccccccccccccc--cccccc-ccc
Confidence 2345678888888887655455666666666665431 0 110000 00000000000000000 000000 000
Q ss_pred CCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCC-C----ccchhHHHHHHHhcC-------
Q 000196 844 WPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVP-Y----LPKVLPDLFHTVRTC------- 911 (1874)
Q Consensus 844 ~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~-~----l~~ilp~ll~~l~~~------- 911 (1874)
. .......++ -.++..|..+..|+. .+++..+++.+-.|+...|..+.| + +.+++-.++..++..
T Consensus 1336 ~-~~~~~~~lW-~pLL~~Ls~l~~D~R-lEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~ 1412 (1780)
T PLN03076 1336 T-DKDDHLYFW-FPLLAGLSELSFDPR-PEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGD 1412 (1780)
T ss_pred c-cchhHHHHH-HHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 0 000001122 134455666566654 356778999999999999988765 3 466777777777632
Q ss_pred ----------Cc--c----hhHHHHHHHHHHHHHHHHhH---HHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHH
Q 000196 912 ----------DD--Y----LKDYITWKLGTLVSIVRQHI---RKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQ 972 (1874)
Q Consensus 912 ----------~~--~----~~~~~~~~l~~lv~~~~~~i---~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~ 972 (1874)
.+ . +.+....+|..+++...+++ .+.++.++.++......... .....-..++..
T Consensus 1413 ~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~------~la~ig~~~l~~ 1486 (1780)
T PLN03076 1413 EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQ------SLAGIGIAAFVR 1486 (1780)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHHHHHHHH
Confidence 00 1 23444445555555555443 35666666666655443220 011122444455
Q ss_pred HHHHhhhhhhc-cchhhHHHHHHhc
Q 000196 973 LCLALNDEFRT-HLPVILPCCIQVL 996 (1874)
Q Consensus 973 l~~~l~~~f~~-yl~~llp~ll~~l 996 (1874)
+...-+..|.+ .+..++..+.+++
T Consensus 1487 li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1487 LMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHH
Confidence 55555555544 3444444444443
No 191
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=75 Score=45.61 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=79.0
Q ss_pred CChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHH
Q 000196 700 ANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLL 779 (1874)
Q Consensus 700 ~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll 779 (1874)
.++..+..+..+++.++.+.|. .+|+..+...+++.+.+..+...|..-.-++|.+-++.|.. .+..++-.-+..++
T Consensus 888 ~~p~~rc~~~ea~arLaq~v~~--~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~-~s~qhl~t~v~ill 964 (2067)
T KOG1822|consen 888 PNPKLRCAAAEALARLAQVVGS--APFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI-GSGQHLNTSVSILL 964 (2067)
T ss_pred CChHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC-CCchhcccHHHHHH
Confidence 3677777888899999998775 57888888999999988777778888889999998888875 45555556566777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh
Q 000196 780 KMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 780 ~~l~~~~~~~vr~~al~~lg~l 801 (1874)
...++..++.|+.-+++.+..+
T Consensus 965 al~~Ds~~p~VqtwSL~al~~i 986 (2067)
T KOG1822|consen 965 ALATDSTSPVVQTWSLHALALI 986 (2067)
T ss_pred HHhhcCCCchhhhhHHHHHHHH
Confidence 7777777889999999888764
No 192
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=1.8 Score=52.55 Aligned_cols=170 Identities=17% Similarity=0.229 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHH-HHhCCCCHHHHHHHHHHHHhhhcCCcCc
Q 000196 555 RRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIF-AALNDEDFDVREYAISVAGRLSEKNPAY 633 (1874)
Q Consensus 555 ~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~-~~l~D~~~~VR~~a~~~l~~l~~~~p~~ 633 (1874)
.++.++++.+| ..|.|+..|..-.-+++. .|... ....+++.++ .+.+|.+.+||++|+-+||-++-..|..
T Consensus 514 qe~add~I~el----l~d~ds~lRy~G~fs~al--Ay~GT-gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~ 586 (926)
T COG5116 514 QEMADDYINEL----LYDKDSILRYNGVFSLAL--AYVGT-GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL 586 (926)
T ss_pred HHHHHHHHHHH----hcCchHHhhhccHHHHHH--HHhcC-CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcch
Confidence 35566666555 478888888765554431 00000 0123455554 4588999999999999999888777543
Q ss_pred cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHH
Q 000196 634 VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVG 713 (1874)
Q Consensus 634 v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~ 713 (1874)
+ ...+.-|..+ .++..|.-.+-+||-.+...+.. ..+..|-+.+.|. ..-|+++++.+++
T Consensus 587 l--------v~tvelLs~s-hN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~-----~dfVRQ~AmIa~~ 646 (926)
T COG5116 587 L--------VGTVELLSES-HNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDT-----NDFVRQSAMIAVG 646 (926)
T ss_pred h--------hHHHHHhhhc-cchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCc-----HHHHHHHHHHHHH
Confidence 2 2223333344 56778887788888877666632 2233344444443 6778999999999
Q ss_pred HHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 000196 714 DLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1874)
Q Consensus 714 ~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~ 756 (1874)
.+.....+.+.|.+..+...+.+.+.|. ++.++.-||.
T Consensus 647 mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K-----he~glaklGA 684 (926)
T COG5116 647 MILMQCNPELNPNVKRIIKKFNRVIVDK-----HESGLAKLGA 684 (926)
T ss_pred HHHhhcCcccChhHHHHHHHHHHHHhhh-----hHhHHHHHHH
Confidence 9888888899999999999999888753 4445555553
No 193
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.16 E-value=3.2 Score=51.96 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=108.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc-chHHHHHHH---HHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccc
Q 000196 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-LPALRRHLI---QLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1874)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~p~l~~~l~---~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1874)
+.|+.+|+-.+.+||..|..++-.+...-.... .......|. ..+..|..+ +-+..|..|...+..+....=..+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d-~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLED-PYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHc
Confidence 345666667778888888877766554332211 111122221 133334445 567888888877776665443333
Q ss_pred ccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
.| .|+.-++.++-|+-..+..++|+.+++.++..++.+ ...-+-+.+++|.+-..|+|. +..+|-+++.-|..+
T Consensus 256 P~---~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~-se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 256 PP---TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDN-SEKVRVAFVDMLLKI 329 (1005)
T ss_pred CH---HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhcc-chhHHHHHHHHHHHH
Confidence 33 455555555554322234567888999999988753 445677889999999999987 577999888887765
Q ss_pred HhhccccccccccchHHHHHHHHHhcCCCCHHHHHH
Q 000196 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRRE 793 (1874)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~ 793 (1874)
-..-. +.-+...| ++.++..|.+++.+..|+.
T Consensus 330 k~vra--~~f~~I~~--~d~~l~~L~~d~~~v~rr~ 361 (1005)
T KOG1949|consen 330 KAVRA--AKFWKICP--MDHILVRLETDSRPVSRRL 361 (1005)
T ss_pred Hhhhh--hhhhcccc--HHHHHHHHhccccHHHHHH
Confidence 33221 12222222 5667777777655444543
No 194
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=92.13 E-value=0.65 Score=55.16 Aligned_cols=254 Identities=19% Similarity=0.225 Sum_probs=68.5
Q ss_pred HHHHHHhhcCChHHHhHHHH-HHhchhhhh------hcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHH
Q 000196 1330 ALIHINNQLHQHEAAVGILT-YAQKELDVQ------LKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLA 1402 (1874)
Q Consensus 1330 ~L~~iy~~L~~~D~~~Gi~~-~~~~~~~~~------~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~ 1402 (1874)
.+..++-+.|+++.+..+++ ......+.. .....++.+|++++|..+|++.+...+.. ......++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~---~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKAN---PQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccc-c
Confidence 45777778888888888774 222210111 12233688999999999999887543221 1223334444 5
Q ss_pred HhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHH
Q 000196 1403 ALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRA 1482 (1874)
Q Consensus 1403 ~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a 1482 (1874)
..++++.-...+...|... ++ .......+..+.+.++|+.....+........ ...+..||..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~-~~--~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~ 151 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD-GD--PRYLLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWLA 151 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHHH
T ss_pred ccccccccccccccccccc-cc--cchhhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHHH
Confidence 6777777766666655432 11 22334556778899999999998886432110 0122334433
Q ss_pred --HHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHH-HH
Q 000196 1483 --VLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLA-VR 1559 (1874)
Q Consensus 1483 --~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~-~R 1559 (1874)
......|+. ..| +.-++.+++. .|++ ..-+ ..-.|. + .-..+.+.-..++. +.
T Consensus 152 ~a~~~~~~G~~----~~A---------~~~~~~al~~--~P~~----~~~~--~~l~~~--l-i~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 152 LAEIYEQLGDP----DKA---------LRDYRKALEL--DPDD----PDAR--NALAWL--L-IDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHCCHH----HHH---------HHHHHHHHHH---TT-----HHHH--HHHHHH--H-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCH----HHH---------HHHHHHHHHc--CCCC----HHHH--HHHHHH--H-HHCCChHHHHHHHHHHH
Confidence 333334431 111 1112222221 1111 1110 111221 1 11112221111111 11
Q ss_pred HhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Q 000196 1560 ALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARL 1639 (1874)
Q Consensus 1560 ~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l 1639 (1874)
... ..+...|..++....+-|+.+.|...+.++...+| .+|.+...++..++..|. ..+|....
T Consensus 208 ~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p----------~d~~~~~~~a~~l~~~g~---~~~A~~~~ 271 (280)
T PF13429_consen 208 KAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP----------DDPLWLLAYADALEQAGR---KDEALRLR 271 (280)
T ss_dssp HH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST----------T-HHHHHHHHHHHT---------------
T ss_pred HHC---cCHHHHHHHHHHHhccccccccccccccccccccc----------cccccccccccccccccc---cccccccc
Confidence 111 23456788899999999999999999999887655 368999999999999995 57888877
Q ss_pred HHHHH
Q 000196 1640 QTLAM 1644 (1874)
Q Consensus 1640 ~~~~~ 1644 (1874)
+....
T Consensus 272 ~~~~~ 276 (280)
T PF13429_consen 272 RQALR 276 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 76543
No 195
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.02 E-value=51 Score=48.48 Aligned_cols=129 Identities=11% Similarity=0.124 Sum_probs=79.3
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHhhcchhhHH-HH---HH----HHHHHHHhhccC--------------C-----CCh
Q 000196 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRV-QW---YY----RMFEATQDGLGR--------------N-----APV 254 (1874)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~-~~---~~----~i~~~~~~~l~~--------------~-----~~~ 254 (1874)
...|+.++||..|...|-.++..- .....+ -| +. .+++.+...... + +.|
T Consensus 1355 l~~D~RlEVR~~ALqtLF~iL~~y---G~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~W 1431 (1780)
T PLN03076 1355 LSFDPRPEIRKSALQVLFDTLRNH---GHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAW 1431 (1780)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhH
Confidence 345999999999999887776432 222222 23 22 223333221110 0 013
Q ss_pred hHHHHHHHHHHHHHHcchh---hhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHh
Q 000196 255 HSIHGSLLAVGELLRNTGE---FMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTV 331 (1874)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~---~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~ 331 (1874)
. .+....+|..+++.-.. .+.+.+++++..+..+....+..+-+.-+.++-.+..-....|.+..|..++..+...
T Consensus 1432 l-~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~l 1510 (1780)
T PLN03076 1432 L-YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEA 1510 (1780)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 2 46667777777653322 2333444555555555666788888888888888888788888888888888888777
Q ss_pred hcC
Q 000196 332 LRI 334 (1874)
Q Consensus 332 L~~ 334 (1874)
.+.
T Consensus 1511 f~~ 1513 (1780)
T PLN03076 1511 ANA 1513 (1780)
T ss_pred HHH
Confidence 653
No 196
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=91.95 E-value=11 Score=43.27 Aligned_cols=196 Identities=13% Similarity=0.105 Sum_probs=107.3
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
...+.++.+....+++|..-...+. ...+.+++.+....+..+.+.+..+..++.++...++..+ |.+++++......
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r 86 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILR 86 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhh
Confidence 4566777777777777742111111 2234567777777777777778889999999999998754 8888877654433
Q ss_pred HhhCC----CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchh
Q 000196 649 LEQSS----ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMR 724 (1874)
Q Consensus 649 l~~~~----~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~ 724 (1874)
...+. ...+..-..+..+..+++..|+ +..+++..+...+++. .++.+...++.++..+.+..--++.
T Consensus 87 ~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~----~~~~~~alale~l~~Lc~~~vvd~~ 158 (234)
T PF12530_consen 87 IPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQS----CDEVAQALALEALAPLCEAEVVDFY 158 (234)
T ss_pred cccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHhhccHH
Confidence 22210 1111122234466677777666 5666777777777321 2555666667777776643333333
Q ss_pred hcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh
Q 000196 725 QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1874)
Q Consensus 725 ~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l 782 (1874)
+...-+.|.+ +.+.|-.-+++|+.++...+.--.....|+.+-..++..+
T Consensus 159 s~w~vl~~~l--------~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~l 208 (234)
T PF12530_consen 159 SAWKVLQKKL--------SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLL 208 (234)
T ss_pred HHHHHHHHhc--------CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHH
Confidence 3333333322 2234444455555544433322122234555555555444
No 197
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.71 E-value=31 Score=40.09 Aligned_cols=240 Identities=13% Similarity=0.127 Sum_probs=136.2
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCc--chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH
Q 000196 74 ISGLLESNDAAENLGALRAIDELIDVALGE--NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1874)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~li~~~~~~--~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~ 151 (1874)
+-+.+++.+...|..|+..+...+.--..+ ..+.+.-+.+|...-+ .|...+..|.+++..|+.. .....+...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl---~D~~~~~~~l~gl~~L~~~-~~~~~~~~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL---DDHACVQPALKGLLALVKM-KNFSPESAV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh---ccHhhHHHHHHHHHHHHhC-cCCChhhHH
Confidence 345677889999999999999987653222 3445666667666655 3778888889999888854 234444555
Q ss_pred HHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHhhcc
Q 000196 152 FQVKMALDWLR-GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 152 ~~~~~~~~~l~-~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
..++.+++... .......|.....++..+.++-+..+...=+.++..++..+. +.+|+-=--+.+-+..++....
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--- 156 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--- 156 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc---
Confidence 66666665443 223346799999999999888655554444556666665552 3334322223333333322211
Q ss_pred hhhHHHHHHHHHHHHHhhc----cCC-CCh--hHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHH
Q 000196 230 TRWRVQWYYRMFEATQDGL----GRN-APV--HSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSI 301 (1874)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~l----~~~-~~~--~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~ 301 (1874)
. .+....+++.+...+ .-+ ++. -.+..=-.+|...+... +.|. -.++.++..+++..+.++..+
T Consensus 157 --~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-----~~fa~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 157 --I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-----PLFAPFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred --c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-----HhhHHHHHHHHHHHHcCCCcHHHHHH
Confidence 2 344556666655543 111 111 01111111222222222 3333 356678888888888899888
Q ss_pred HHHhHhHhh-hChhhHHHHHHHHHHHHHH
Q 000196 302 TSLLPRIAH-FLRDRFVTNYLKICMNHIL 329 (1874)
Q Consensus 302 ~~~i~~la~-~~~~~f~~~yl~~~~~~Ll 329 (1874)
+.++...+. |.+.... .|+..+-..|.
T Consensus 229 L~tL~~c~~~y~~~~~~-~~~~~iw~~lk 256 (262)
T PF14500_consen 229 LQTLKACIENYGADSLS-PHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHCCHHHHH-HHHHHHHHHHH
Confidence 887776543 4444333 35555554443
No 198
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=91.64 E-value=0.72 Score=44.93 Aligned_cols=88 Identities=22% Similarity=0.350 Sum_probs=67.3
Q ss_pred HHHHHccCCC---chhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH-HHhHHH
Q 000196 861 SLMRILRDPS---LASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV-RQHIRK 936 (1874)
Q Consensus 861 ~Ll~iL~d~s---~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~-~~~i~~ 936 (1874)
..-..+.|.. ....+..++.++..+++..|.....+++||+-.+...++ .+++++.++.....++..+ ..++.|
T Consensus 15 ~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ 92 (107)
T smart00802 15 VFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGP 92 (107)
T ss_pred HHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3334455554 334567899999999997776556677777777777665 4569999999999999887 468899
Q ss_pred hHHHHHHHHHHhhc
Q 000196 937 YLQELFSLISELWS 950 (1874)
Q Consensus 937 y~~~i~~~i~~~~~ 950 (1874)
.++.++..+..+|.
T Consensus 93 ll~~~~~~i~~~~~ 106 (107)
T smart00802 93 LLDQIFAAILPLWP 106 (107)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999999986
No 199
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.52 E-value=9.1 Score=50.03 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCC
Q 000196 1614 QVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDES 1693 (1874)
Q Consensus 1614 ~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~ 1693 (1874)
+-.+..|..+.++|+ .++|..++.++++.-. .....|..+|+-..+. .+
T Consensus 140 ~~ll~eAN~lfarg~---~eeA~~i~~EvIkqdp----------------------~~~~ay~tL~~IyEqr------Gd 188 (895)
T KOG2076|consen 140 RQLLGEANNLFARGD---LEEAEEILMEVIKQDP----------------------RNPIAYYTLGEIYEQR------GD 188 (895)
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCc----------------------cchhhHHHHHHHHHHc------cc
Confidence 345678899999995 7899999999886421 1222344444443332 23
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000196 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlL 1773 (1874)
.+..+.....|.+++|+.+.-|..||...-+ ..++..|.-+|-|+|++. ....+.+.+=-
T Consensus 189 ~eK~l~~~llAAHL~p~d~e~W~~ladls~~--------------~~~i~qA~~cy~rAI~~~------p~n~~~~~ers 248 (895)
T KOG2076|consen 189 IEKALNFWLLAAHLNPKDYELWKRLADLSEQ--------------LGNINQARYCYSRAIQAN------PSNWELIYERS 248 (895)
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHh--------------cccHHHHHHHHHHHHhcC------CcchHHHHHHH
Confidence 5667788888999999999999999966332 247889999999999985 34588899999
Q ss_pred HHHHhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHHhccC---CChhHHHHHHHHHHHHH-----hhCchhhHHHHHHH
Q 000196 1774 TLWFNHGATEEVQIALQKGFAHVNINTWLVVLPQIIARIHS---NNRAVRELIQSLLVRIG-----QSHPQALMYPLLVA 1845 (1874)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~~---~~~~v~~~l~~ll~~i~-----~~hPqa~ly~L~v~ 1845 (1874)
+|.-++|+...-.+.+.+-+...|+.-| .++-++|=+.-| .......++..|--.+. -.+|++=+|..+..
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~-er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDI-ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 9999999988777788888888884333 344455554211 11112233333333333 35677777777666
Q ss_pred hcC
Q 000196 1846 CKS 1848 (1874)
Q Consensus 1846 ~kS 1848 (1874)
.++
T Consensus 328 ~~~ 330 (895)
T KOG2076|consen 328 KNK 330 (895)
T ss_pred HhH
Confidence 544
No 200
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=91.52 E-value=19 Score=40.66 Aligned_cols=166 Identities=16% Similarity=0.173 Sum_probs=106.3
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....+...+....+.|+++.|...+.++...+|. .+......+.+.+.+|+ ..+|++.++..+....
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~ 96 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----------DYLAYLALALYYQQLGE---LEKAEDSFRRALTLNP 96 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 3678899999999999999999999988765442 34666778888888885 5789988887664311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc--ccchHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA--TKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~--~~~~k~w~~wA~~n~~~ 1725 (1874)
. . ...+..+|...... ...++..+.|.++.+.. +.....|..+|......
T Consensus 97 ~------------------~----~~~~~~~~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 97 N------------------N----GDVLNNYGTFLCQQ------GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred C------------------C----HHHHHHHHHHHHHc------ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 0 0 11223333333222 24577888888887643 34456676666554321
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
+ -...|+..|-+++...+ ........+-.+++..|+.++....+++.+.
T Consensus 149 -------g-------~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 149 -------G-------DFDKAEKYLTRALQIDP------QRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred -------C-------CHHHHHHHHHHHHHhCc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 23367778888777642 2233455666777777877766666655543
No 201
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=91.34 E-value=2.4 Score=41.65 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHHHHHHhhc----chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHH
Q 000196 273 EFMMSRYREVAEIVLRYLEH----RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEM 348 (1874)
Q Consensus 273 ~~~~~~~~~i~~~ll~~~~~----~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~l 348 (1874)
+|+.+++-.++..+-..+.+ ++..-|+.++..|+.+-+..+. .+..+.+++|..|...++.+..|..|+.|-..+
T Consensus 3 ~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~-~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~f 81 (107)
T PF08064_consen 3 DFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGS-HISSARPQIMACLQSALEIPELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 45555555555444333333 5566788899999998885444 556688999999999998888899999999999
Q ss_pred Hhhchh-hhhhhhHHHHHHHHHhh
Q 000196 349 AGALDG-ELFHYLPTITSHLREAI 371 (1874)
Q Consensus 349 a~~v~~-~~~p~l~~i~~~l~~~L 371 (1874)
...++. ++.|+++.++-.+...+
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999976 57788888777666543
No 202
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.32 E-value=3.6 Score=46.17 Aligned_cols=168 Identities=16% Similarity=0.239 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCC------CHHHHHHHHHHHHhhhcCCc
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDE------DFDVREYAISVAGRLSEKNP 631 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~------~~~VR~~a~~~l~~l~~~~p 631 (1874)
++.|+..| ..+.+...|.+++++|..+. -+ ...++..+..++|. +.++-...+...-.|..+.-
T Consensus 199 F~kvisal----~dEs~~~~r~aAl~sLr~ds----Gl--hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~ 268 (450)
T COG5095 199 FDKVISAL----LDESDEQTRDAALESLRNDS----GL--HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKY 268 (450)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhccCc----cH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCc
Confidence 44444444 45778899999999996422 22 22455555554442 23334444455555555444
Q ss_pred CccchHHHHHHHHHHHHHh-----hCCCC---hHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChh
Q 000196 632 AYVLPALRRHLIQLLTYLE-----QSSAD---NKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNG 703 (1874)
Q Consensus 632 ~~v~p~l~~~l~~~l~~l~-----~~~~~---~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~ 703 (1874)
-++-|++.++|..+++.+- +++.+ -..|.-|+.+++-+.+..++..+..-+.+...+++.+-|... ..+
T Consensus 269 iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k---~~s 345 (450)
T COG5095 269 IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREK---TES 345 (450)
T ss_pred eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccc---ccc
Confidence 4566999999888887653 22111 126778999999999988887777777888888888777532 223
Q ss_pred HHHHHHHHHHHHHHhc-ccchhhcHHhHHHHHHHHH
Q 000196 704 IISGVLVTVGDLARVG-GFGMRQYISELMPLIVEAL 738 (1874)
Q Consensus 704 v~~~~~~~l~~La~~~-g~~~~~~~~~llp~l~~~l 738 (1874)
..-+++.++..|.... ...+.|.++-....+.+.|
T Consensus 346 T~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktl 381 (450)
T COG5095 346 TQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTL 381 (450)
T ss_pred hhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHH
Confidence 3345666666554321 1223444444443443444
No 203
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.91 E-value=92 Score=44.05 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=59.5
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
.+.-+.|-+.+||.+++......+...+... .... .++..-..|.|+++|......+.
T Consensus 305 fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~------------------~~~~----~~~~l~~~~~D~~~rir~~v~i~ 362 (1266)
T KOG1525|consen 305 FLGRFNDISVEVRMECVESIKQCLLNNPSIA------------------KAST----ILLALRERDLDEDVRVRTQVVIV 362 (1266)
T ss_pred HHHHhccCChhhhhhHHHHhHHHHhcCchhh------------------hHHH----HHHHHHhhcCChhhhheeeEEEE
Confidence 3444566788999998888777776543210 1011 11222235677777766555443
Q ss_pred CCC--CcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcC
Q 000196 587 GNR--GFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEK 629 (1874)
Q Consensus 587 ~~~--~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~ 629 (1874)
.+. .|.-.+. +..+..+-.-+.|....||..|+.-+.++-++
T Consensus 363 ~~~v~~~~l~~~-~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 363 ACDVMKFKLVYI-PLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred EeehhHhhhhhh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 2221111 22666777778899999999999988876663
No 204
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=90.90 E-value=5.2 Score=47.27 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=72.8
Q ss_pred HHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC-CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhH
Q 000196 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC-VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHI 934 (1874)
Q Consensus 856 ~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~-~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i 934 (1874)
..+-..|-+.|.-.-.+-+|..+.+....||+.+|... ...+.-..|.++-.+..+.-.+|..++..+-..+--++..+
T Consensus 53 ~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L 132 (307)
T PF04118_consen 53 LQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPAL 132 (307)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHH
Confidence 45667777878554456789999999999999998864 45677777888777777766666666554444443444455
Q ss_pred HHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh
Q 000196 935 RKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE 980 (1874)
Q Consensus 935 ~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~ 980 (1874)
+|.++.++..+.-.+.... ......++.+++.+..+++..
T Consensus 133 ~p~l~~li~slLpGLede~------sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEG------SEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHHHHhccccccCC------chHHHHHHHHHHHHHHhcChh
Confidence 5555555444443333211 011124555555555555554
No 205
>PF05536 Neurochondrin: Neurochondrin
Probab=90.74 E-value=64 Score=41.94 Aligned_cols=244 Identities=14% Similarity=0.081 Sum_probs=133.9
Q ss_pred CcHHHHHHHHHHHcCCCCchhhHHHH-HHHHHHHHHhhhChHHH--HHHHHHHH-HHHHhhhcCCC-------hhhhhhH
Q 000196 21 GSLDALNRILADLCTHGNPKEGASLA-LRKHIEEQARDLGGEAF--SRFMDQLY-DRISGLLESND-------AAENLGA 89 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~~~~~~aa~~-l~~~v~~~~~~~~~~~~--~~~~~~l~-~~i~~l~~s~~-------~~~r~~~ 89 (1874)
..++.+.+.++-|+++.++.+=|+.- +.+++ ..-+.+.. ++.++.+- +.+..|+++.. ..-+--|
T Consensus 2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~----~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~La 77 (543)
T PF05536_consen 2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLL----DADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLA 77 (543)
T ss_pred CchHHHHHHHHHhccCCcHHHHHHHHHHHHcC----CCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 35678999999999987443324332 22232 22221111 12333332 22444555411 2223335
Q ss_pred HHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH-HHHHHHhhhcCCCcc
Q 000196 90 LRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVE 167 (1874)
Q Consensus 90 i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~ 167 (1874)
+..+.++..-+.-- .+.++.+...++ .++....+.++...+.++|..++.++.+ ...+++. -++.+.+.+.. ..
T Consensus 78 vsvL~~f~~~~~~a~~~~~~~~IP~Ll-e~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~--~~ 153 (543)
T PF05536_consen 78 VSVLAAFCRDPELASSPQMVSRIPLLL-EILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPN--QS 153 (543)
T ss_pred HHHHHHHcCChhhhcCHHHHHHHHHHH-HHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHh--Cc
Confidence 55555554432111 234444444444 4443334558899999999999865311 1112221 34445555443 23
Q ss_pred hhHHHHHHHHHHHHhhcCc-c---chhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh--cchhhHHHHHHHHH
Q 000196 168 YRRFAAVLILKEMAENAST-V---FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK--RETRWRVQWYYRMF 241 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~-~---~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~--r~~~~~~~~~~~i~ 241 (1874)
....-|+.+|..+...... . -...+..+++.+-..+...+...+-..++-|..++..... ......+.|...+.
T Consensus 154 ~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~ 233 (543)
T PF05536_consen 154 FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLR 233 (543)
T ss_pred chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHH
Confidence 3455677777666554332 2 1345566777777777666666666666666666543310 11124567998888
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000196 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1874)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1874)
..+.+-+.+.-....|..++.+...+++..|
T Consensus 234 ~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 234 KGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 8888777766557789999999999988544
No 206
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.72 E-value=7.1 Score=43.76 Aligned_cols=186 Identities=21% Similarity=0.182 Sum_probs=103.7
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc----------cchHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY----------VLPALR 639 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~----------v~p~l~ 639 (1874)
..+.++.||..+-++|+. .++ ++.++.+-...+|+..+||+++--++.++--..... +-|.-+
T Consensus 78 desq~pmvRhEAaealga--~~~-----~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p 150 (289)
T KOG0567|consen 78 DESQEPMVRHEAAEALGA--IGD-----PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP 150 (289)
T ss_pred ccccchHHHHHHHHHHHh--hcc-----hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc
Confidence 356788999999999862 222 456777777778999999998777776654332110 111100
Q ss_pred ---HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 640 ---RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 640 ---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
..+.++-..+.......-.|..|...|-++ + .+.-+..+...+.++ +.-++..+..++|.|-
T Consensus 151 ~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----g------~EeaI~al~~~l~~~-----SalfrhEvAfVfGQl~ 215 (289)
T KOG0567|consen 151 ANLSSVHELRAELLDETKPLFERYRAMFYLRNI----G------TEEAINALIDGLADD-----SALFRHEVAFVFGQLQ 215 (289)
T ss_pred cccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----C------cHHHHHHHHHhcccc-----hHHHHHHHHHHHhhcc
Confidence 000000001111000011122221111111 0 122344445555543 4556667777777764
Q ss_pred HhcccchhhcHHhHHHHHHHHHhcC-cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHH
Q 000196 717 RVGGFGMRQYISELMPLIVEALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1874)
Q Consensus 717 ~~~g~~~~~~~~~llp~l~~~l~d~-~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al 795 (1874)
. +.-+|.+.+.|.|. ++..+|..|+.+||.++. ++.++.|-..+.++ .+-||..+.
T Consensus 216 s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------------e~~~~vL~e~~~D~-~~vv~esc~ 272 (289)
T KOG0567|consen 216 S----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------------EDCVEVLKEYLGDE-ERVVRESCE 272 (289)
T ss_pred c----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------------HHHHHHHHHHcCCc-HHHHHHHHH
Confidence 3 35577888888763 467899999999998752 35677777777655 567887765
Q ss_pred HHHHH
Q 000196 796 KVLGI 800 (1874)
Q Consensus 796 ~~lg~ 800 (1874)
-++..
T Consensus 273 valdm 277 (289)
T KOG0567|consen 273 VALDM 277 (289)
T ss_pred HHHHH
Confidence 55544
No 207
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=90.71 E-value=45 Score=40.16 Aligned_cols=132 Identities=15% Similarity=0.209 Sum_probs=95.9
Q ss_pred ccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCc--chhHHHHHHHHHHHHhhcCccch----hchH
Q 000196 120 EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRV--EYRRFAAVLILKEMAENASTVFN----VHVA 193 (1874)
Q Consensus 120 ~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~--~~~r~aA~~~l~~la~~~p~~~~----~~l~ 193 (1874)
|...|++|....+..+.++-..-....+..++..+...++.+.++-. ...|.+=-.+++.+.++|+..+. ..+.
T Consensus 85 p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~ 164 (319)
T PF08767_consen 85 PDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFK 164 (319)
T ss_dssp GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHH
T ss_pred ccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHH
Confidence 33578999998888888876654455667777777777777764332 46788888899999999988654 3678
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH----HHHHHHHHHhhccCC
Q 000196 194 EFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW----YYRMFEATQDGLGRN 251 (1874)
Q Consensus 194 ~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~----~~~i~~~~~~~l~~~ 251 (1874)
.+++.|.-|+++++..|-+.+.+++..+++.+..........+ +..++..+...+.|+
T Consensus 165 ~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 165 LVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 8899999999999999999999999999888775333333344 444455555555554
No 208
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=90.56 E-value=46 Score=40.05 Aligned_cols=169 Identities=12% Similarity=0.141 Sum_probs=112.9
Q ss_pred hHHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 000196 169 RRFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERA-VEALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~~p~---~~~~~l~~il~~i~~~l~D~~~~VR~aA-~~al~~~~~~i~~r~~~~~~~~~~~i~~~~ 244 (1874)
.|..-+.++.....++++ .....++.+++.++.--++..|..|+.- ...+..+...+.+.-....+..+..+++.+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 455566666667777664 2345777778877777777778888764 333334444444332345567778888877
Q ss_pred HhhccCCC--ChhHHHHHHHHHHHHHHcchhhh----HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh----
Q 000196 245 QDGLGRNA--PVHSIHGSLLAVGELLRNTGEFM----MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD---- 314 (1874)
Q Consensus 245 ~~~l~~~~--~~~~~~~al~~l~~ll~~~~~~~----~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~---- 314 (1874)
..-+.++. -++.|.+--..++.+.+.+.+.+ .+.+..+++.++-..+|.++.|....+.++..+......
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~ 202 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE 202 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 77665432 26888888888999888654432 247788899999999999999999999888887654332
Q ss_pred ---hHHHHHHHHHHHHHHHhhcCCCC
Q 000196 315 ---RFVTNYLKICMNHILTVLRIPAE 337 (1874)
Q Consensus 315 ---~f~~~yl~~~~~~Ll~~L~~~~~ 337 (1874)
.|.+.|+-.++..++..+.+...
T Consensus 203 ~~~~F~~~y~~~il~~if~vltD~~H 228 (319)
T PF08767_consen 203 FANQFYQQYYLDILQDIFSVLTDSDH 228 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 56667777778888887766543
No 209
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=38 Score=38.91 Aligned_cols=282 Identities=14% Similarity=0.078 Sum_probs=137.0
Q ss_pred CCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhcCC
Q 000196 495 KGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADA 573 (1874)
Q Consensus 495 ~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~ 573 (1874)
.|..+.|-.+..+...+-+++..|..-|.+.++.++...- .+ .-+. ...++ +++++.++. .+...
T Consensus 75 egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcD-----------tn-aVse-illvvNaeilklild-cIgge 140 (524)
T KOG4413|consen 75 EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCD-----------TN-AVSE-ILLVVNAEILKLILD-CIGGE 140 (524)
T ss_pred cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCc-----------hh-hHHH-HHHHhhhhHHHHHHH-HHcCC
Confidence 3555555555555666777788887767666666654211 00 0000 11222 344444443 56667
Q ss_pred ChhHHHHHHHhccCCCCcchhhccHhhHHHHHHH-hCCC----------CHHHHHHHHHHHHhhhcCCcCccchHHH-HH
Q 000196 574 DVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAA-LNDE----------DFDVREYAISVAGRLSEKNPAYVLPALR-RH 641 (1874)
Q Consensus 574 ~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~-l~D~----------~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~ 641 (1874)
|.+|-.++++++..-..| |.-+..+|.. ++|+ +.-+|..++.++-.+....|......-. ..
T Consensus 141 ddeVAkAAiesikrialf------paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGL 214 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALF------PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGL 214 (524)
T ss_pred cHHHHHHHHHHHHHHHhc------HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhH
Confidence 788888888877521122 2334444421 1221 2246777778887777777653221111 23
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHh-CccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHH---
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR--- 717 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~--- 717 (1874)
+.++..+++.. .|.-.+....++...+++. .+..+.|. ..+++.+-..+...+ .+|--.-.++...|.+..
T Consensus 215 ldlLeaElkGt-eDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGad---sdPfekfralmgfgkffgkea 289 (524)
T KOG4413|consen 215 LDLLEAELKGT-EDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGAD---SDPFEKFRALMGFGKFFGKEA 289 (524)
T ss_pred HHHHHHHhcCC-cceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCC---CCcHHHHHHHHHHHHHhcchH
Confidence 34455666665 5666778888888888864 23333221 234444444444321 122222222333333221
Q ss_pred ---hcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccch-HHHHHHHHHhcCCCCHHHHHH
Q 000196 718 ---VGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYP-QLLGLLLKMLNGELVWSTRRE 793 (1874)
Q Consensus 718 ---~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p-~ll~~Ll~~l~~~~~~~vr~~ 793 (1874)
+..+.+..-+.-.+.-.++++.. .+++..++|+.++|.+-+++...--....-| ..=..+.++.....+ .-..+
T Consensus 290 imdvseeaicealiiaidgsfEmiEm-nDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnah-akqea 367 (524)
T KOG4413|consen 290 IMDVSEEAICEALIIAIDGSFEMIEM-NDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH-AKQEA 367 (524)
T ss_pred HhhcCHHHHHHHHHHHHHhhHHhhhc-CCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccccc-chHHH
Confidence 11122222222222222333332 2566788999999998777654310011123 233333444432222 23456
Q ss_pred HHHHHHHhcc
Q 000196 794 VLKVLGIMGA 803 (1874)
Q Consensus 794 al~~lg~lga 803 (1874)
+++++..+..
T Consensus 368 aihaLaaIag 377 (524)
T KOG4413|consen 368 AIHALAAIAG 377 (524)
T ss_pred HHHHHHHhhc
Confidence 7788776643
No 210
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.45 E-value=5.1 Score=48.09 Aligned_cols=197 Identities=17% Similarity=0.204 Sum_probs=115.6
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc-h---HHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL-P---ALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC 673 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~-p---~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~ 673 (1874)
.+.+..|...+..-+++.|..+..+++.+....+..=. | ++.....+++..+....+.++..-.+..+|-+.++.-
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH
Confidence 46778888888888899999999999999888765422 2 2322112222222111022333333333333333220
Q ss_pred --ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc----ccchhhcHHhHHHHHHHHHhcCcchhhH
Q 000196 674 --ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAAVTKR 747 (1874)
Q Consensus 674 --~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~llp~l~~~l~d~~~~~~r 747 (1874)
...+.. ++.+..+...+.. .+-++.+.++.++.++.... .+.+..+++.++..+...|... +--.|
T Consensus 155 ~l~~~iL~--~~~f~~ff~~~~~-----~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtk 226 (335)
T PF08569_consen 155 SLAKIILY--SECFWKFFKYVQL-----PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTK 226 (335)
T ss_dssp HHHHHHHT--SGGGGGHHHHTTS-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHH
T ss_pred HHHHHHhC--cHHHHHHHHHhcC-----CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEee
Confidence 000000 1122223333333 36778888899998876543 3456677778888666666544 55667
Q ss_pred HHHHHHHHHHHhhccc--cccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 748 EVAVSTLGQVVQSTGY--VITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 748 ~~A~~~Lg~l~~~~~~--~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
..+++-||.+...-.. ++.-|..-|+-|..++.+|++. +..++.+|+.++-..-|
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence 7899999998854433 3466777799999999999754 88999999999876543
No 211
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.28 E-value=2.9 Score=43.84 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~ 1692 (1874)
|...+..+..++..|+ ..+|+..++..+.. .. . ...--..+|.++..+|+|
T Consensus 24 p~~~~~~g~~~~~~g~---~~~A~~~~~~al~~-~P--~------------~~~a~~~lg~~~~~~g~~----------- 74 (144)
T PRK15359 24 PETVYASGYASWQEGD---YSRAVIDFSWLVMA-QP--W------------SWRAHIALAGTWMMLKEY----------- 74 (144)
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHc-CC--C------------cHHHHHHHHHHHHHHhhH-----------
Confidence 4445667888888885 68899988876532 10 0 011123355566666655
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhcc
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAA 1757 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~ 1757 (1874)
++.+..|..|++++|++..+|+.+|...... + -...|++.|-+++.+.+
T Consensus 75 --~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~-------g-------~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 75 --TTAINFYGHALMLDASHPEPVYQTGVCLKMM-------G-------EPGLAREAFQTAIKMSY 123 (144)
T ss_pred --HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-------C-------CHHHHHHHHHHHHHhCC
Confidence 6788999999999999999999999875542 1 12368999999998853
No 212
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=90.09 E-value=6.2 Score=41.32 Aligned_cols=111 Identities=13% Similarity=-0.061 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCc
Q 000196 1572 WLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651 (1874)
Q Consensus 1572 wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~ 1651 (1874)
|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.- ...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~---~~~A~~~y~~Al~l-~p~-- 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW----------SWRAHIALAGTWMMLKE---YTTAINFYGHALML-DAS-- 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhc-CCC--
Confidence 556788888999999999999998887663 46788889999999994 68999999887642 110
Q ss_pred cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
...-.-.++.|+..+|+ .++.+..|..|++.+|+....|..-+....
T Consensus 91 ------------~~~a~~~lg~~l~~~g~-------------~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 ------------HPEPVYQTGVCLKMMGE-------------PGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred ------------CcHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 01111234555554444 578899999999999999999976665543
No 213
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=2.2 Score=51.08 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=74.6
Q ss_pred HHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH------------HHhhhccCCC----
Q 000196 1672 ARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV------------MSHYTLRGLP---- 1735 (1874)
Q Consensus 1672 a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~------------~~~~~~~~~~---- 1735 (1874)
+-+..+.|+=..++. +....+.+|+.|++++|..|+||+.++..+.-+ ...-+. .++
T Consensus 364 ~~aWTLmGHEyvEmK------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~ 436 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMK------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWV 436 (559)
T ss_pred hHHHHHhhHHHHHhc------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHH
Confidence 445777777667764 347789999999999999999998776654321 111100 000
Q ss_pred -----CchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1736 -----SVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1736 -----~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
+....-...||+||-+++.++. ..-.-..||=.|.-+.++..+....+++++.
T Consensus 437 aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 437 ALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1123456899999999999862 2223468888888888888777776766653
No 214
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.04 E-value=12 Score=46.76 Aligned_cols=238 Identities=11% Similarity=0.105 Sum_probs=128.6
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH-HHHHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCcc
Q 000196 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVS-KFSNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMT 146 (1874)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~-~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~-~g~~~ 146 (1874)
.+..++.++++|+|+++|..--..+-.+.+-..+. ...++ .+.+.+.+.+.......-+...-+.+|.+... .-...
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~-r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL-RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 46777889999999999986555555554322122 22222 22333333333233445566677788887764 22455
Q ss_pred hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 147 ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 147 ~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
.++..+....+++......-......=..++..+.+.-|++..+.+..++. .|.. .++.-.| -.|+.+.+++.
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk-~WP~-t~s~Kev-----~FL~el~~il~ 284 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLK-HWPK-TNSQKEV-----LFLNELEEILE 284 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHH-HS-S-S-HHHHH-----HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-hCCC-CCchhHH-----HHHHHHHHHHH
Confidence 777777777777776654444444445556666677777766554444442 2332 2222221 22333333333
Q ss_pred hcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-----hcchhHHHHHH
Q 000196 227 KRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-----EHRDRLVRLSI 301 (1874)
Q Consensus 227 ~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-----~~~~~~vr~~~ 301 (1874)
.-++..-......++..+...+.++. ..+...|+...+.= .--..+..+-+.+++.++..+ +|=+..||..+
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~h-~qVAErAl~~w~n~--~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a 361 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSPH-FQVAERALYFWNNE--YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLA 361 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHGGGGSH--HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHCCH--HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 22233344566777888888887775 55666665543210 000122223333444444443 34588999999
Q ss_pred HHHhHhHhhhChhhHH
Q 000196 302 TSLLPRIAHFLRDRFV 317 (1874)
Q Consensus 302 ~~~i~~la~~~~~~f~ 317 (1874)
..++..+...+++-|-
T Consensus 362 ~~vl~~l~~~d~~lf~ 377 (409)
T PF01603_consen 362 QNVLKILMEMDPKLFD 377 (409)
T ss_dssp HHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHhCHHHHH
Confidence 9999999998887664
No 215
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.76 E-value=14 Score=41.64 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=88.5
Q ss_pred hchHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHH
Q 000196 190 VHVAEFVDAIWVALRDP-TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELL 268 (1874)
Q Consensus 190 ~~l~~il~~i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll 268 (1874)
..+.-.|+.+..+|.|. +...|+||.++|+.=..+ .+..+.+..-+-+++.+.+++ -+.-..-+.+...|+
T Consensus 193 KELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGl-----hQLvPYFi~f~~eqit~Nl~n---l~~LtTv~~m~~sLL 264 (450)
T COG5095 193 KELQMYFDKVISALLDESDEQTRDAALESLRNDSGL-----HQLVPYFIHFFNEQITKNLKN---LEKLTTVVMMYSSLL 264 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-----HHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHh
Confidence 34444556666666554 678999999987631111 123445555566666666654 244555556777888
Q ss_pred HcchhhhHHHHHHHHHHHHHHhh----------cchhHHHHHHHHHhHhHhhhChhhHHHHHH---HHHHHHHHH-hhcC
Q 000196 269 RNTGEFMMSRYREVAEIVLRYLE----------HRDRLVRLSITSLLPRIAHFLRDRFVTNYL---KICMNHILT-VLRI 334 (1874)
Q Consensus 269 ~~~~~~~~~~~~~i~~~ll~~~~----------~~~~~vr~~~~~~i~~la~~~~~~f~~~yl---~~~~~~Ll~-~L~~ 334 (1874)
.+..-|+.||+.++++.++.++- |..-.+|..+..+++.+.. .|...|- +++...++. .|++
T Consensus 265 ~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~----~F~~~YktLkPRvtrTllKafLD~ 340 (450)
T COG5095 265 KNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFS----NFSSSYKTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred cCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHh----hhhHhhhhhchHHHHHHHHHHHhc
Confidence 87778899999999887776541 1223478878887777653 4544442 455555444 3444
Q ss_pred CCCc---chHHHHHHHHH
Q 000196 335 PAER---DSGFIALGEMA 349 (1874)
Q Consensus 335 ~~~R---~~a~~alg~la 349 (1874)
.+.- -.|+.+++-+.
T Consensus 341 ~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 341 EKTESTQYGALKGLSILS 358 (450)
T ss_pred ccccchhhhhhhhhhhhc
Confidence 4432 34555555543
No 216
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=89.76 E-value=60 Score=40.12 Aligned_cols=220 Identities=12% Similarity=0.043 Sum_probs=114.1
Q ss_pred hhHHHHHhHhhccccC--c-chhHHHHHHHHHHhhc-ccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc
Q 000196 87 LGALRAIDELIDVALG--E-NASKVSKFSNYMRTVF-EVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR 162 (1874)
Q Consensus 87 ~~~i~ai~~li~~~~~--~-~~~~~~~~~~~L~~~l-~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~ 162 (1874)
..|+-+++.++-...- . .......+.......+ .+..+-.+...+-+++..=--..+..+.+.++..+. ++.-+.
T Consensus 64 ~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~-~l~~i~ 142 (372)
T PF12231_consen 64 IQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLA-ALHNIK 142 (372)
T ss_pred HHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHH-HHHHhh
Confidence 4466666666533200 0 1112222344433343 223344566666666543111122233444443333 222232
Q ss_pred C-CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh----------
Q 000196 163 G-DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR---------- 231 (1874)
Q Consensus 163 ~-~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~---------- 231 (1874)
+ =+.-+.=..++.+++.+....|..|..+...-+|.++..+-+....+|..|...+-.+...+. .+..
T Consensus 143 ~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~-~~~~~s~~~~~~~~ 221 (372)
T PF12231_consen 143 NRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLG-PNKELSKSVLEDLQ 221 (372)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhC-hhHHHHHHHHHHhc
Confidence 2 222344466788899999999999999999999999999999999999987655544432222 1100
Q ss_pred ---hHHHHHHHHHHHHHhhccCCCChhHHHHHHH--HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhH
Q 000196 232 ---WRVQWYYRMFEATQDGLGRNAPVHSIHGSLL--AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLP 306 (1874)
Q Consensus 232 ---~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~--~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~ 306 (1874)
....+...+.+.+..-+.+++. ..++--. ++-.|++...-.-.+++.+.+...-.++++.++.+|.++..++.
T Consensus 222 ~~~~~~~~~~~~~~~L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~ 299 (372)
T PF12231_consen 222 RSLENGKLIQLYCERLKEMIKSKDE--YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWR 299 (372)
T ss_pred cccccccHHHHHHHHHHHHHhCcCC--cchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0001122222223332333111 1111111 12222221111223466666666667788999999999999999
Q ss_pred hHhh
Q 000196 307 RIAH 310 (1874)
Q Consensus 307 ~la~ 310 (1874)
.+..
T Consensus 300 ~liy 303 (372)
T PF12231_consen 300 RLIY 303 (372)
T ss_pred HHHH
Confidence 8875
No 217
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=89.76 E-value=4 Score=54.11 Aligned_cols=137 Identities=21% Similarity=0.232 Sum_probs=86.4
Q ss_pred HHHHHHHHhhhcCC----ChhhhhhHHHHHhHhhccccCcc----hhHHHHHHHHHHhhccc---CCChHHHHHHHHHHH
Q 000196 68 DQLYDRISGLLESN----DAAENLGALRAIDELIDVALGEN----ASKVSKFSNYMRTVFEV---KRDREILVLASKVLG 136 (1874)
Q Consensus 68 ~~l~~~i~~l~~s~----~~~~r~~~i~ai~~li~~~~~~~----~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~lg 136 (1874)
.++.+.++++++++ +..-+.++++++.+++.....+. ...+..+.+|+...+.. ..|.+.+...-++||
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 34566677787763 44567889999999986421221 12234566666665542 346677788888998
Q ss_pred HHhhhCCCcchHHHHHHHHHHHhhhc--CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHH
Q 000196 137 HLARAGGAMTADEVEFQVKMALDWLR--GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1874)
Q Consensus 137 ~l~~~~g~~~~~~v~~~~~~~~~~l~--~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA 214 (1874)
.+... .. ++....++. .......|.+|+.+|+-++..+|....+.+-+|+- =.+.+++||-+|
T Consensus 472 N~g~~---~~-------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-----n~~e~~EvRiaA 536 (574)
T smart00638 472 NAGHP---SS-------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-----NRAEPPEVRMAA 536 (574)
T ss_pred ccCCh---hH-------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-----CCCCChHHHHHH
Confidence 76543 11 223333333 23345789999999999999999865544443331 124468899999
Q ss_pred HHHHH
Q 000196 215 VEALR 219 (1874)
Q Consensus 215 ~~al~ 219 (1874)
..+|=
T Consensus 537 ~~~lm 541 (574)
T smart00638 537 VLVLM 541 (574)
T ss_pred HHHHH
Confidence 88764
No 218
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=89.74 E-value=13 Score=42.62 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000196 1611 GPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1874)
Q Consensus 1611 ~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~ 1690 (1874)
..+...+..+..+...|+ ..+|+..+++++..... .....+.++.+|....+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~---~~~A~~~~~~~~~~~p~-------------------~~~~~~a~~~la~~~~~~----- 83 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGD---YTEAIKYFEALESRYPF-------------------SPYAEQAQLDLAYAYYKS----- 83 (235)
T ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------------chhHHHHHHHHHHHHHhc-----
Confidence 357788888888888885 68899999987754321 122344566666666543
Q ss_pred CCCHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1691 DESIPEIIAAYRNATQCATKWGK---AWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k---~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
...++.+..|+++++.+|+... +|+..|..+++.+... .........|++.|-+.+...
T Consensus 84 -~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 84 -GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV------DRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred -CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc------cCCHHHHHHHHHHHHHHHHHC
Confidence 3578899999999999997665 6777777766542110 111234567777777777654
No 219
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=89.60 E-value=21 Score=43.81 Aligned_cols=204 Identities=16% Similarity=0.198 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcC----CCcchhHHHHHHHHHHHHhhcC-c-cc--hhchHHHHH
Q 000196 126 EILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG----DRVEYRRFAAVLILKEMAENAS-T-VF--NVHVAEFVD 197 (1874)
Q Consensus 126 ~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~----~~~~~~r~aA~~~l~~la~~~p-~-~~--~~~l~~il~ 197 (1874)
.+...+++.+.+.+..-+.....|++..+..+.+.|.. .+....=..|+.+|..+++... . .| .+++.+|+.
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 34445555555555543222334555555555555532 2222222447778887776532 1 33 478888887
Q ss_pred HH-HHhh--c---------CCchhH------------HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCC
Q 000196 198 AI-WVAL--R---------DPTLAV------------RERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP 253 (1874)
Q Consensus 198 ~i-~~~l--~---------D~~~~V------------R~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~ 253 (1874)
.| +..| + ||.+-| |.||++-++.+.+.-.+.-...-..+...++.+-... ...+
T Consensus 191 ~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~--~~~~ 268 (370)
T PF08506_consen 191 KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASN--PSNN 268 (370)
T ss_dssp HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTT-
T ss_pred HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhC--Cccc
Confidence 64 4444 2 444444 5678887776654321100111122333333322221 1235
Q ss_pred hhHHHHHHHHHHHHHHcc-----h--h-----hhHHHHHHH-HHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHH
Q 000196 254 VHSIHGSLLAVGELLRNT-----G--E-----FMMSRYREV-AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNY 320 (1874)
Q Consensus 254 ~~~~~~al~~l~~ll~~~-----~--~-----~~~~~~~~i-~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~y 320 (1874)
|..+.||+.+++++.... | + -+.+.|... .+.+- --....|.+|..++..+.......+. ..
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~ 343 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQ 343 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HH
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HH
Confidence 899999999999997732 1 0 122333322 12221 11245677888888777766654433 46
Q ss_pred HHHHHHHHHHhhcCCC
Q 000196 321 LKICMNHILTVLRIPA 336 (1874)
Q Consensus 321 l~~~~~~Ll~~L~~~~ 336 (1874)
+..++|.+...|.++.
T Consensus 344 l~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 344 LLQIFPLLVNHLQSSS 359 (370)
T ss_dssp HHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHhCCCC
Confidence 7889999999998765
No 220
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=89.53 E-value=1.1 Score=41.79 Aligned_cols=81 Identities=12% Similarity=0.253 Sum_probs=55.8
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000196 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1874)
.|+|++|+..|++.+...+...+ ......+-.|+..+|+|+.-....+.. ..++. .....-+.+.+.+.+|+|+.-
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~-~~~~~~la~~~~~~~~y~~A~~~~~~~--~~~~~-~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN-SAYLYNLAQCYFQQGKYEEAIELLQKL--KLDPS-NPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH-HHHHHHHHHHHHHTTHHHHHHHHHHCH--THHHC-HHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChh-HHHHHHHHHHHHHCCCHHHHHHHHHHh--CCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 47899999999998876553211 345566889999999999888877651 11111 124445779999999999987
Q ss_pred HHHHh
Q 000196 1447 AEYVS 1451 (1874)
Q Consensus 1447 ~~~~~ 1451 (1874)
.+.+.
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76554
No 221
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=89.29 E-value=5.2 Score=48.56 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=91.1
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC---CCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN---DEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLL 646 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~---D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l 646 (1874)
+.+.+...|..++++|..+....+.+ |-++.++..... +.+..+-...++.+..|..+.--.+.||+..++...+
T Consensus 187 ~~~~~~~~r~~aL~sL~tD~gl~~Ll--Pyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vl 264 (343)
T cd08050 187 LVGSNEEKRREALQSLRTDPGLQQLL--PYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVL 264 (343)
T ss_pred HhCCCHHHHHHHHHHhccCCCchhhh--hHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHH
Confidence 34577889999999997543332211 223333332211 1145555667777777777665567799999888877
Q ss_pred HHHhh--------CCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHH
Q 000196 647 TYLEQ--------SSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1874)
Q Consensus 647 ~~l~~--------~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1874)
+.+.. ..+.+..|+.|+.+++.+++.++....-.-+.|+..+.+.+.++.. .....-+++.+++.+
T Consensus 265 tclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~---~~~~~YGAi~GL~~l 338 (343)
T cd08050 265 TCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKK---PLTTHYGAIVGLSAL 338 (343)
T ss_pred HHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCC---CcchhhHHHHHHHHh
Confidence 76521 1134678999999999999988776655566788888888887631 222345666666554
No 222
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=89.28 E-value=25 Score=39.57 Aligned_cols=160 Identities=13% Similarity=0.110 Sum_probs=101.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++....+. .+......+.++..+|+ ..+|++.++..+....
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~~ 130 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN----------NGDVLNNYGTFLCQQGK---YEQAMQQFEQAIEDPL 130 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHccc---HHHHHHHHHHHHhccc
Confidence 4678888999999999999999999988876542 34566777888888884 6889998888764211
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
.. . .......++.++...| ..++....|.++.+.+|+...+|..+|......
T Consensus 131 ~~-~------------~~~~~~~l~~~~~~~g-------------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 182 (234)
T TIGR02521 131 YP-Q------------PARSLENAGLCALKAG-------------DFDKAEKYLTRALQIDPQRPESLLELAELYYLR-- 182 (234)
T ss_pred cc-c------------chHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc--
Confidence 00 0 0000112344443333 457788999999999999888998888775541
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHH
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQ 1786 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~ 1786 (1874)
+ -...|+..|-+++... ........-+..+....|+..+..
T Consensus 183 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 183 -----G-------QYKDARAYLERYQQTY------NQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred -----C-------CHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHH
Confidence 1 1234555565555542 122333334445556666654433
No 223
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.19 E-value=4 Score=50.44 Aligned_cols=211 Identities=17% Similarity=0.148 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcC-CcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccc
Q 000196 1528 EGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLP-PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHEN 1606 (1874)
Q Consensus 1528 ~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~-~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~ 1606 (1874)
.+..+++-+.|++|=+ .++-|..-+..+. ..+..+.|+-.+...-.+|+.+.|..+...+++++|..-.
T Consensus 116 ae~ysn~aN~~kerg~--------~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c-- 185 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQ--------LQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC-- 185 (966)
T ss_pred HHHHHHHHHHHHHhch--------HHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh--
Confidence 3455667888988743 2222322222222 3355899999999999999999999999999998774210
Q ss_pred ccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcC
Q 000196 1607 VRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALP 1686 (1874)
Q Consensus 1607 ~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~ 1686 (1874)
+.---..++=++|. -.||-....+-+.. . ...|-++.-+|--...
T Consensus 186 --------a~s~lgnLlka~Gr---l~ea~~cYlkAi~~---q-------------------p~fAiawsnLg~~f~~-- 230 (966)
T KOG4626|consen 186 --------ARSDLGNLLKAEGR---LEEAKACYLKAIET---Q-------------------PCFAIAWSNLGCVFNA-- 230 (966)
T ss_pred --------hhcchhHHHHhhcc---cchhHHHHHHHHhh---C-------------------CceeeeehhcchHHhh--
Confidence 00011123333442 23444333332211 0 0112222222222211
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh------hhc----cCCC----------CchhhHHHHHH
Q 000196 1687 PGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH------YTL----RGLP----------SVAPQFVVHAV 1746 (1874)
Q Consensus 1687 ~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~------~~~----~~~~----------~~~~~~~~~ai 1746 (1874)
...+...+++|++|++++|+.-.|++.++.+..+.... |.+ +... +...-.+-.||
T Consensus 231 ----~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 231 ----QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred ----cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence 23567789999999999999999999998887654321 110 0000 01122466889
Q ss_pred HHHHHHHhhccccCCCcchHHh-HHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1747 TGYFHSIACAAHAKGVDDSLQD-ILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1747 ~~f~~si~~~~~~~~~~~~~q~-~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
.+|-|+|.+++ .|.+ -.-|-.-+-+-|+..|-.+.-++++.
T Consensus 307 ~~Ykral~~~P-------~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 307 DTYKRALELQP-------NFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHhcCC-------CchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999998853 1222 23333333444554444444444443
No 224
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=89.06 E-value=96 Score=41.53 Aligned_cols=67 Identities=21% Similarity=0.214 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH-----HHHHHHHHhccC
Q 000196 1744 HAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL-----VVLPQIIARIHS 1814 (1874)
Q Consensus 1744 ~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl-----~~ipQLiari~~ 1814 (1874)
.||+.|=++++- ...++..+-+.+|--.|++-|...+..+.......-.|....+ .|+-|+..-+-.
T Consensus 698 ~AIqmYe~~lkk----f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 698 LAIQMYENCLKK----FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILR 769 (1018)
T ss_pred HHHHHHHHHHHH----hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHh
Confidence 677777777653 2345678889999999999998777666666666666655543 577787777743
No 225
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.01 E-value=6.4 Score=51.84 Aligned_cols=157 Identities=18% Similarity=0.128 Sum_probs=94.9
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHH-HHHHHHhhcccC--CChHHHHHHHHHHHHHhhhCCCcc
Q 000196 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSK-FSNYMRTVFEVK--RDREILVLASKVLGHLARAGGAMT 146 (1874)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~-~~~~L~~~l~~~--~d~~v~~~aa~~lg~l~~~~g~~~ 146 (1874)
|+..+.+|++|+-.+-|--=+.--..++.++.......++. -..|...++.++ -+.+-+..||=+|.-++..-..-+
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 45667788888777666422222223333331111111111 122444444331 135788888888888877411112
Q ss_pred hHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHH
Q 000196 147 ADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRV 224 (1874)
Q Consensus 147 ~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~ 224 (1874)
...++ .++..|++.|.++..+-.|+=.+.+|+.|-++-+. ....-=..-.+.+...|+||-|+||-||.-||+.++..
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 22233 36778888886654567788888888888877443 23333334567788899999999999999999999876
Q ss_pred Hh
Q 000196 225 IE 226 (1874)
Q Consensus 225 i~ 226 (1874)
..
T Consensus 673 ~~ 674 (1387)
T KOG1517|consen 673 GS 674 (1387)
T ss_pred cc
Confidence 54
No 226
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=88.57 E-value=27 Score=41.38 Aligned_cols=229 Identities=10% Similarity=0.055 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhc-cc--cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHh
Q 000196 63 FSRFMDQLYDRISGLLESNDAAENLGALRAIDELID-VA--LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLA 139 (1874)
Q Consensus 63 ~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~-~~--~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~ 139 (1874)
+++|.+++.+.+..+=+.++|.+-.+.+.=+...+. .. ...-+.+ ..+..-|..|+.|.--..|=..|-++.+.+-
T Consensus 5 ~kky~~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k-~~v~krLaqCL~P~LPsGVH~KaLevY~~IF 83 (307)
T PF04118_consen 5 YKKYNAEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHK-LQVSKRLAQCLNPALPSGVHQKALEVYEYIF 83 (307)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 344444444443333334455544444444444433 11 0111111 2244455555554333456667777777665
Q ss_pred hhCCC-cchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHH
Q 000196 140 RAGGA-MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEAL 218 (1874)
Q Consensus 140 ~~~g~-~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al 218 (1874)
+.-|. ...+-+.-....+++.++ ...-..|-.-+-++...-...+..+.|.+..++-.++.||-|...++-+.+...+
T Consensus 84 ~~ig~~~L~~dl~i~~~GLfpl~~-~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll 162 (307)
T PF04118_consen 84 ERIGPDGLAQDLPIYSPGLFPLFS-YASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLL 162 (307)
T ss_pred HhcCHHHHHhhcHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHH
Confidence 54221 112222223344444442 1222344444445544444566688999999999999999999988888888877
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch------------hhhHHHHHHHHHHH
Q 000196 219 RACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG------------EFMMSRYREVAEIV 286 (1874)
Q Consensus 219 ~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~------------~~~~~~~~~i~~~l 286 (1874)
..+...+.. ..+++.+.-.+.. + .+.|.+|+..+..-+.... ..+.+.-+=++..+
T Consensus 163 ~~l~~~v~~------~~F~~~lwl~ii~---s---p~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al 230 (307)
T PF04118_consen 163 DKLKEAVGD------KYFWQCLWLCIIT---S---PSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRAL 230 (307)
T ss_pred HHHHHhcCh------hHHHHHHHHHHhc---C---cchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHH
Confidence 666554431 2455555555443 2 3668887776543322111 01122222244555
Q ss_pred HHHhhcchhHHHHHHHHHh
Q 000196 287 LRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 287 l~~~~~~~~~vr~~~~~~i 305 (1874)
...+++.+..|++..++++
T Consensus 231 ~~~L~D~~iLVqR~~LDlL 249 (307)
T PF04118_consen 231 CACLEDENILVQRGFLDLL 249 (307)
T ss_pred HHHhCCchHHHHHHHHHHH
Confidence 5566666666666655544
No 227
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=88.57 E-value=1.2e+02 Score=41.88 Aligned_cols=358 Identities=13% Similarity=0.029 Sum_probs=188.0
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-h---hhhhhcHHHH
Q 000196 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-E---LDVQLKESWY 1364 (1874)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~---~~~~~~~~~~ 1364 (1874)
..++.+..+-+.+..|+-+++..+... +......-.|..++...|+++.+.-.++.... . .........+
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l 126 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVY 126 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 467778888889999998888766432 33355667888999999999999988875432 1 1122234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhH--HHHHHHHHHHcC-
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEM--APMAANAAWNMG- 1441 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~--~~~~a~aaw~l~- 1441 (1874)
...|+.++|+..|++.+...++. .+....+..++...|+.+.-....+..-. .|+....+ .+.....-+.+.
T Consensus 127 ~~~g~~~~Al~~l~~al~~~P~~---~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~ 201 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPRAPQT---QQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMP 201 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhccc
Confidence 89999999999999998765543 34555677788888887754444333211 22211111 111111111100
Q ss_pred ------ChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC--hhhhHHHHHHH-HHHhHhhhhHH
Q 000196 1442 ------EWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK--VLESYERAYSN-MVRVQQLSELE 1512 (1874)
Q Consensus 1442 ------~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~--~~esy~ray~~-l~~lq~L~Ele 1512 (1874)
++...++. ...++.++...... ....|.+++-. +..+-...+.+
T Consensus 202 ~~~~~~r~~~ad~A---------------------------l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 202 TRSEKERYAIADRA---------------------------LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred ccChhHHHHHHHHH---------------------------HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 00000000 00111111110000 11123333211 11111112333
Q ss_pred HHHH-hhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhh-cCCcc---cHHHHHHHHHHHHhcCChhH
Q 000196 1513 EVID-YCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALV-LPPTE---DVETWLKFASLCRKSGRISQ 1587 (1874)
Q Consensus 1513 Eii~-~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~v-l~~~e---~~~~wlk~a~laRk~g~~~~ 1587 (1874)
+++. |......++..+. -...|--.+.....+++.=...+. .++ .+|.. ....+.+++....+.|+++.
T Consensus 255 eA~~~~~~ll~~~~~~P~----~a~~~la~~yl~~g~~e~A~~~l~--~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPP----WAQRWVASAYLKLHQPEKAQSILT--ELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HHHHHHHHhhccCCCCCH----HHHHHHHHHHHhcCCcHHHHHHHH--HHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 3332 1111111000011 112232222222333333333222 221 22222 14567777777899999999
Q ss_pred HHHHHHHHhcCCCCCCc-cccc---CC-CChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccccccccc
Q 000196 1588 ARSTLVKLLQYDPETSH-ENVR---YH-GPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTT 1662 (1874)
Q Consensus 1588 a~~~L~~l~~~~~~~~~-~~~~---~~-~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~ 1662 (1874)
|...+.++....|.... .... +. ....+.+-.+.++-..|+ ..+|+..+++.+.....
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~---~~eA~~~l~~al~~~P~-------------- 391 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND---LPQAEMRARELAYNAPG-------------- 391 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC--------------
Confidence 99999988766542100 0000 00 112355667778878885 68999999987654211
Q ss_pred ccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1663 ATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1663 ~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
+ ...+..+|.-.... ..+++.++.|++|.+++|+....++..|..
T Consensus 392 ----n----~~l~~~lA~l~~~~------g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 392 ----N----QGLRIDYASVLQAR------GWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred ----C----HHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 1 22344455544332 347889999999999999999988888874
No 228
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=88.54 E-value=4.4 Score=42.97 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=68.1
Q ss_pred cchhchHHHHHHHHHhhc-CC-----------------chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhc
Q 000196 187 VFNVHVAEFVDAIWVALR-DP-----------------TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1874)
Q Consensus 187 ~~~~~l~~il~~i~~~l~-D~-----------------~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l 248 (1874)
++.|+++.++|.++.... ++ --.+|.+|.+++-.+++....+- ....+++.+..|+
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~------~~~~~~~~v~~GL 75 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRI------DISEFLDRVEAGL 75 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHhhc
Confidence 467899999999997654 33 24789999999999887433221 2566788999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHH
Q 000196 249 GRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVL 287 (1874)
Q Consensus 249 ~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll 287 (1874)
+|. .+++.-+..++.-++...++.+.++++.+++.+-
T Consensus 76 ~D~--~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~ 112 (169)
T PF08623_consen 76 KDE--HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLR 112 (169)
T ss_dssp SS---HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 983 6888888889988888888777777776665443
No 229
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=88.48 E-value=15 Score=45.00 Aligned_cols=132 Identities=15% Similarity=0.145 Sum_probs=73.6
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc--CCCcchhHHHHHHHHHHHHhhcCc-----
Q 000196 114 YMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--GDRVEYRRFAAVLILKEMAENAST----- 186 (1874)
Q Consensus 114 ~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~--~~~~~~~r~aA~~~l~~la~~~p~----- 186 (1874)
|+++=+++++-...+++|+..+-.|++..+......+...+...+.-.. ...+|..+.+|+.+++.++....+
T Consensus 214 YIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gv 293 (370)
T PF08506_consen 214 YIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGV 293 (370)
T ss_dssp HHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-
T ss_pred HHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCc
Confidence 6666665432346677777777788775222222222223333332211 346788999999999999865321
Q ss_pred -cch--hchHHHHHH-HHHhhc---CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCC
Q 000196 187 -VFN--VHVAEFVDA-IWVALR---DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA 252 (1874)
Q Consensus 187 -~~~--~~l~~il~~-i~~~l~---D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~ 252 (1874)
... ..+.+++.. |..-|. +.+|.+|-.|++.+..+-.. ...+.+..+++.+...|.+++
T Consensus 294 t~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~-------l~~~~l~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 294 TQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQ-------LPKEQLLQIFPLLVNHLQSSS 359 (370)
T ss_dssp S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG-------S-HHHHHHHHHHHHHHTTSS-
T ss_pred ccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHHhCCCC
Confidence 111 134454433 445555 56788988888876655332 234567789999999998875
No 230
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=88.43 E-value=9.6 Score=47.12 Aligned_cols=139 Identities=19% Similarity=0.264 Sum_probs=88.3
Q ss_pred CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCC---CChhHHHHHHHHHHHHHHhcccchhhcHHhH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGIN---ANNGIISGVLVTVGDLARVGGFGMRQYISEL 730 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~---~~~~v~~~~~~~l~~La~~~g~~~~~~~~~l 730 (1874)
.+...|.+|+..| ....+ +..+++.++.++.+....+ .+-.....++..+-.|..+-.-.+.||+.++
T Consensus 219 ~~~~~r~eAL~sL---~TDsG------L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L 289 (576)
T KOG2549|consen 219 SDEPLRQEALQSL---ETDSG------LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQL 289 (576)
T ss_pred CCHHHHHHHHHhh---ccCcc------HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHH
Confidence 4566677766544 22222 3334444444444432110 1112222333333333333334789999999
Q ss_pred HHHHHHHHhc---------CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 000196 731 MPLIVEALLD---------GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGE-LVWSTRREVLKVLGI 800 (1874)
Q Consensus 731 lp~l~~~l~d---------~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~-~~~~vr~~al~~lg~ 800 (1874)
+|.++.++-. .+.+..|+-|...++.++...+...+ ...|.+...+.+.+.+. .+.....-++..|..
T Consensus 290 ~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~--~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 290 VPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYN--NLQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred hhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 9999998731 23577999999999999999886532 23578899999988655 578899999999988
Q ss_pred hcc
Q 000196 801 MGA 803 (1874)
Q Consensus 801 lga 803 (1874)
+|.
T Consensus 368 lg~ 370 (576)
T KOG2549|consen 368 LGH 370 (576)
T ss_pred hhh
Confidence 884
No 231
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.06 E-value=27 Score=43.33 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 147 ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 147 ~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
.++|...+..++..+. .++-+.|.-.+++|..+..+....=..-.+.++..+..-+-|..+.||..|..+|..+-+..
T Consensus 86 ~~~V~~~~~h~lRg~e-skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~- 163 (885)
T COG5218 86 EELVAGTFYHLLRGTE-SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME- 163 (885)
T ss_pred hHHHHHHHHHHHhccc-CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc-
Confidence 5677777777766653 34446788889999988888766545556777888888889999999999999887664332
Q ss_pred hcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000196 227 KRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAV 264 (1874)
Q Consensus 227 ~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l 264 (1874)
....+.... ++-.+.+ .+| +.++|.+|++-+
T Consensus 164 ---~neen~~~n-~l~~~vq--nDP-S~EVRr~allni 194 (885)
T COG5218 164 ---LNEENRIVN-LLKDIVQ--NDP-SDEVRRLALLNI 194 (885)
T ss_pred ---CChHHHHHH-HHHHHHh--cCc-HHHHHHHHHHHe
Confidence 222222222 2222221 133 357788877653
No 232
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.80 E-value=79 Score=40.47 Aligned_cols=168 Identities=14% Similarity=0.107 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhccc
Q 000196 44 SLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEV 121 (1874)
Q Consensus 44 a~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~ 121 (1874)
...|-.++.+..+-...-.=...+..+.+.+..++++ ++...=.+++..+++++.. |. +...+..+...|-.+..
T Consensus 151 l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y--~~iP~~sl~~~i~vLCsi~~- 227 (464)
T PF11864_consen 151 LSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY--GDIPSESLSPCIEVLCSIVN- 227 (464)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc--CcCChHHHHHHHHHHhhHhc-
Confidence 3445556655554433211124455566666666644 4444557899999999876 44 45667788888888874
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC-----CcchhHHHHHHHHHHHHhhcCccchh--chH-
Q 000196 122 KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-----RVEYRRFAAVLILKEMAENASTVFNV--HVA- 193 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~-----~~~~~r~aA~~~l~~la~~~p~~~~~--~l~- 193 (1874)
. .+..+.+-+++..|+.+.. . ..-+..+.+.|.++ ++.+.-.+|+.+++.+.-+.+..-.| .+.
T Consensus 228 ~--~~l~~~~w~~m~nL~~S~~--g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~ 299 (464)
T PF11864_consen 228 S--VSLCKPSWRTMRNLLKSHL--G----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSP 299 (464)
T ss_pred c--cccchhHHHHHHHHHcCcc--H----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccH
Confidence 3 3777778888888887521 1 12245555566321 22233368999999988776432222 233
Q ss_pred -HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 194 -EFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 194 -~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
.+++.+..+++-+++.| +.+.+..+...+
T Consensus 300 ~~vl~sl~~al~~~~~~v---~~eIl~~i~~ll 329 (464)
T PF11864_consen 300 SSVLPSLLNALKSNSPRV---DYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHHhCCCCee---hHHHHHHHHHHH
Confidence 48899999999888888 444444444444
No 233
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=87.70 E-value=0.79 Score=36.19 Aligned_cols=40 Identities=30% Similarity=0.423 Sum_probs=32.0
Q ss_pred HHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHH
Q 000196 176 ILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEA 217 (1874)
Q Consensus 176 ~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~a 217 (1874)
+|..+.+.-|+.+.. +.+...|...+.|+++.||+||.+.
T Consensus 2 ~l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 456677777776643 3788888899999999999999875
No 234
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=1e+02 Score=39.99 Aligned_cols=290 Identities=13% Similarity=0.095 Sum_probs=160.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh--Cccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN--CERLIR 678 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~--~~~~~~ 678 (1874)
+.-+.-.+.++.--.|..|++.+.++....+.. ..+-+......+.++++ +...+.+|+-++..++.+ ..+.+.
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~eeDfkd~--~ill~aye~t~ncl~nn--~lpv~ieAalAlq~fi~~~q~h~k~s 537 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN--GILLEAYENTHNCLKNN--HLPVMIEAALALQFFIFNEQSHEKFS 537 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHhcC--CcchhhhHHHHHHHHHhchhhhHHHH
Confidence 455555677887778889999999987666542 12233333334444443 556778888899888865 456778
Q ss_pred cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHH----Hh---cCc------chh
Q 000196 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEA----LL---DGA------AVT 745 (1874)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~----l~---d~~------~~~ 745 (1874)
.+++++|+-++..-++- +.++. -.++..+.+..++++.||-++++..+.+. .+ +.+ ..+
T Consensus 538 ahVp~tmekLLsLSn~f-----eiD~L---S~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDD 609 (970)
T COG5656 538 AHVPETMEKLLSLSNTF-----EIDPL---SMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDD 609 (970)
T ss_pred hhhhHHHHHHHHhcccc-----cchHH---HHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccH
Confidence 88999999888865542 22233 23455666777788888888887777662 22 111 112
Q ss_pred hHHHHHHHHHHHHhhccccccccccchHHHHHHHH--------HhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCC
Q 000196 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK--------MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSG 817 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~--------~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~ 817 (1874)
+..+|.+-|..+..- +-.....|.++..+.. +|+++. ..+-.+++..+..+. |..+.
T Consensus 610 KqmaasGiL~T~~sm----iLSlen~p~vLk~le~slypvi~Filkn~i-~dfy~Ea~dildg~t----f~ske------ 674 (970)
T COG5656 610 KQMAASGILRTIESM----ILSLENRPLVLKYLEVSLYPVISFILKNEI-SDFYQEALDILDGYT----FMSKE------ 674 (970)
T ss_pred HHHHHHHHHHHHHHH----HHhcccchHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhhhh----HHHHH------
Confidence 333343333322211 1112223444444433 333332 233344443332111 00000
Q ss_pred CcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC--CC
Q 000196 818 SHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC--VP 895 (1874)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~--~~ 895 (1874)
+. | ...-+...|..+++++....+.+.+..++.+++..=+..+ .+
T Consensus 675 ------------------I~----------p-----imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~ 721 (970)
T COG5656 675 ------------------IE----------P-----IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAG 721 (970)
T ss_pred ------------------hh----------h-----hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccccc
Confidence 00 0 0134566777888777533556677788888876655554 36
Q ss_pred CccchhHHHHHHHhcCCcc---hhHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHhhc
Q 000196 896 YLPKVLPDLFHTVRTCDDY---LKDYITWKLGTLVSIVRQ-HIRKYLQELFSLISELWS 950 (1874)
Q Consensus 896 ~l~~ilp~ll~~l~~~~~~---~~~~~~~~l~~lv~~~~~-~i~~y~~~i~~~i~~~~~ 950 (1874)
...+++-.+....-.+... -+...++.+-.++-.++. ....|+|-..+++.....
T Consensus 722 ~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~ 780 (970)
T COG5656 722 IYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLK 780 (970)
T ss_pred chhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhh
Confidence 7777777777655444332 233445555555555554 445688866666654433
No 235
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=87.30 E-value=1 Score=42.26 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
.+||+|++.|+++....|..+-++++.++..+-...+|| ..|+..+-++|+.+-+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~-~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP-QPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999988888884 5688888888887644
No 236
>PRK12370 invasion protein regulator; Provisional
Probab=87.25 E-value=1.1e+02 Score=40.20 Aligned_cols=193 Identities=12% Similarity=0.013 Sum_probs=103.0
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc---C---CcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000196 1584 RISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL---G---EDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1874)
Q Consensus 1584 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~---g---~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~ 1657 (1874)
.+..|...+.++...+|+ .+......+.+.+.. | ...+..+|+..+++.+.- . +
T Consensus 276 ~~~~A~~~~~~Al~ldP~----------~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-d--P------- 335 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN----------SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-D--H------- 335 (553)
T ss_pred HHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-C--C-------
Confidence 456788888888877663 122222222222211 1 111346788877765532 1 0
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCc
Q 000196 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSV 1737 (1874)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~ 1737 (1874)
..+.++..+|.-.... ...++....|++|++++|+...+|+..|..+... +
T Consensus 336 ------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-------G---- 386 (553)
T PRK12370 336 ------------NNPQALGLLGLINTIH------SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA-------G---- 386 (553)
T ss_pred ------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-------C----
Confidence 1233445555544332 3467899999999999999999999888765431 1
Q ss_pred hhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh-hh-HHHHHHHHHHhccCC
Q 000196 1738 APQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI-NT-WLVVLPQIIARIHSN 1815 (1874)
Q Consensus 1738 ~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~-~~-wl~~ipQLiari~~~ 1815 (1874)
....|+..|-+++.+.+ .+..-... ++.+.+..|..++....+++.+...|+ .. ....+-.+..+.+..
T Consensus 387 ---~~~eAi~~~~~Al~l~P-----~~~~~~~~-~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 387 ---QLEEALQTINECLKLDP-----TRAAAGIT-KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred ---CHHHHHHHHHHHHhcCC-----CChhhHHH-HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 23467888888888753 22211112 233455566666666666665544332 11 122333334444443
Q ss_pred ChhHHHHHHHHHHHHHhhCchhhH
Q 000196 1816 NRAVRELIQSLLVRIGQSHPQALM 1839 (1874)
Q Consensus 1816 ~~~v~~~l~~ll~~i~~~hPqa~l 1839 (1874)
++. .. .+.++....|....
T Consensus 458 ~eA-~~----~~~~~~~~~~~~~~ 476 (553)
T PRK12370 458 ELA-RK----LTKEISTQEITGLI 476 (553)
T ss_pred HHH-HH----HHHHhhhccchhHH
Confidence 321 11 23445556666443
No 237
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=86.93 E-value=3.6 Score=41.27 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=60.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC-CChHHHHhHHHHHHHHHHHcC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTP-AEPAARLEMAPMAANAAWNMG 1441 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~-~~~~~~~~~~~~~a~aaw~l~ 1441 (1874)
.+..+|+.++|...|++.+....+...-.+..+++=.+|..||+.+.-....++.... .+.+....+..+.+.+.+.+|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 4789999999999999998754443333456788999999999997665555432111 122334556677788999999
Q ss_pred ChhhHHH
Q 000196 1442 EWDQMAE 1448 (1874)
Q Consensus 1442 ~Wd~~~~ 1448 (1874)
+++.--+
T Consensus 90 r~~eAl~ 96 (120)
T PF12688_consen 90 RPKEALE 96 (120)
T ss_pred CHHHHHH
Confidence 9887443
No 238
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=86.43 E-value=45 Score=43.13 Aligned_cols=184 Identities=15% Similarity=0.206 Sum_probs=113.0
Q ss_pred HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHH
Q 000196 936 KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTL 1015 (1874)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l 1015 (1874)
.|.+.+++.|...+.... +. +. ...+++=...|..-++.+. ....++|.|...+++.+ ......++..+
T Consensus 345 ~~~~~~~p~l~pi~~~~~-~~---~~-~l~i~e~mdlL~~Kt~~e~--~~~~IlplL~~S~~~~~----~~iQ~~~L~~l 413 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASD-PK---QA-LLFILENMDLLKEKTPPEE--VKEKILPLLYRSLEDSD----VQIQELALQIL 413 (700)
T ss_pred hhhhhhhHHHHHHhccCC-cc---cc-hhhHHhhHHHHHhhCChHH--HHHHHHHHHHHHhcCcc----hhhHHHHHHhh
Confidence 455555555555554322 11 11 1134444444444444433 34678999999997643 33334455555
Q ss_pred HHHhcchh-hhh-hhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000196 1016 EVFGGTLD-EHM-HLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALC 1093 (1874)
Q Consensus 1016 ~~~g~~~~-~~~-~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~ 1093 (1874)
..+.+.++ ..+ +.|+|.|..++-......++..++-|++.+++..+-. -+...+.++.+..+..++++.-..+.+.-
T Consensus 414 ptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~-~v~d~~lpi~~~~~~~dp~iv~~~~~i~~ 492 (700)
T KOG2137|consen 414 PTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA-AVLDELLPILKCIKTRDPAIVMGFLRIYE 492 (700)
T ss_pred hHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 55555554 222 4578888888665668899999999999999765522 23345667778888888888766666655
Q ss_pred HHHHHh--cccccc--chhhHHHHHHhCCCCchhHHHHHHHH
Q 000196 1094 CLAHAL--GEDFTI--FIPSIHKLLLKHRLRHKEFEEIEGRL 1131 (1874)
Q Consensus 1094 ~l~~~~--g~~f~~--~ip~i~~~l~~~~~~~~~~~~~~~~~ 1131 (1874)
.++... |.++.. -+|.+.........+-++|..++..+
T Consensus 493 ~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i 534 (700)
T KOG2137|consen 493 ALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEI 534 (700)
T ss_pred HHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHHHHHH
Confidence 555442 235543 36888888888778888888776544
No 239
>PLN03218 maturation of RBCL 1; Provisional
Probab=86.35 E-value=1.7e+02 Score=41.43 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---hh---hhh
Q 000196 1286 IDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---LD---VQL 1359 (1874)
Q Consensus 1286 i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---~~---~~~ 1359 (1874)
..+..|..++.+++.+..|+..++.-.... . ..+..++..|+..|.+.|+.|.+..++...... .+ ...
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G----l-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAG----L-KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcC----C-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 445566666777777777776665433211 0 122456677777888888877777777654321 01 111
Q ss_pred cHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC---CCChHHHHhHHHHHHHH
Q 000196 1360 KESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT---PAEPAARLEMAPMAANA 1436 (1874)
Q Consensus 1360 ~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~---~~~~~~~~~~~~~~a~a 1436 (1874)
....|-+.|++++|++.|+......-.|+ ......+++++.+.|+++...+...++-. ...++. ........+
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD--~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~--vTynaLI~a 588 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPD--RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH--ITVGALMKA 588 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHH
Confidence 12236777788888877776554433343 23456677777777777766665554421 112221 112233445
Q ss_pred HHHcCChhhHHHHHhhcC
Q 000196 1437 AWNMGEWDQMAEYVSRLD 1454 (1874)
Q Consensus 1437 aw~l~~Wd~~~~~~~~~~ 1454 (1874)
.-+.|+++...++...+.
T Consensus 589 y~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666777777766666553
No 240
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.33 E-value=8 Score=48.93 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
++.+++..++..... .+..|+-.++.-|..+....++--...++.+...+...+.|. .+.+|..|+.+|+.+..
T Consensus 82 lV~~~f~hlLRg~Es-----kdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTES-----KDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR-EPNVRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHHHHhcccC-----cchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhc
Confidence 455666666666554 366787776666666555434433445667777777778886 57899999999998765
Q ss_pred hccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 760 ~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
..+. + --++...+..+++++++++||++++.++..
T Consensus 156 d~~d---e---e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 156 DPKD---E---ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CCCC---C---cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 4332 2 225788888888899999999999887643
No 241
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=86.25 E-value=1.2e+02 Score=39.43 Aligned_cols=55 Identities=13% Similarity=0.358 Sum_probs=40.9
Q ss_pred CccchhHHHHH--HHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhc
Q 000196 896 YLPKVLPDLFH--TVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWS 950 (1874)
Q Consensus 896 ~l~~ilp~ll~--~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~ 950 (1874)
+++-++..++. .+++.+..+|..+-..+..++..++..+.||+++|+..|.+.++
T Consensus 530 ~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~ 586 (980)
T KOG2021|consen 530 KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLH 586 (980)
T ss_pred hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444444443 24555666777777778889999999999999999999998883
No 242
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=86.12 E-value=7.6 Score=51.67 Aligned_cols=154 Identities=10% Similarity=0.087 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhCCC---CCChHHHHHHHHH-HHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCC
Q 000196 1247 KHLVQSLEMAFSSP---NIPPEILATLLNL-AEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDA 1322 (1874)
Q Consensus 1247 ~~l~~~l~~~l~~~---~~p~~i~~~ll~l-~e~m~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~ 1322 (1874)
.++.+..++++... ..|.+-+-.++.+ -.||...+- +.+|+++..++|.|.-|+..+|....-. +
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~La~i~~~~g~~~ea~~~l~~~~~~~------P 117 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELF-----QVLVARALEAAHRSDEGLAVWRGIHQRF------P 117 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHH-----HHHHHHHHHHcCCcHHHHHHHHHHHhhC------C
Confidence 35555666666643 2444422223322 234433222 4689999999999999999999876532 3
Q ss_pred CcHHHHHHHHHHHhhcCChHHHhHHHHHHhc----hhh-hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhH
Q 000196 1323 NPVAVVEALIHINNQLHQHEAAVGILTYAQK----ELD-VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGR 1397 (1874)
Q Consensus 1323 ~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~----~~~-~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~ 1397 (1874)
......-.+..+-.+++..|.+....+..-. +.+ ....+....++|++++|.++|++.+...++. .+...++
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~---~~~~~~~ 194 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF---ENGYVGW 194 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc---HHHHHHH
Confidence 3445566788899999999999887764321 111 2234556799999999999999998743332 4567899
Q ss_pred hHHHHHhhCHHHHHHHH
Q 000196 1398 MRCLAALARWEELNNLC 1414 (1874)
Q Consensus 1398 m~cl~~Lg~w~~l~~~~ 1414 (1874)
=.+|..+|+-+.-....
T Consensus 195 a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 195 AQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 99999999976554333
No 243
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=85.84 E-value=13 Score=44.01 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=83.4
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1566 ~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
..+...|..++.+..+.|+...|...+.+++..+|. ++.+....+-.+...| +..++...++.+...
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~----------~~~~~~~l~~~li~~~---~~~~~~~~l~~~~~~ 209 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD----------DPDARNALAWLLIDMG---DYDEAREALKRLLKA 209 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-----------HHHHHHHHHHHCTTC---HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHH
Confidence 356889999999999999999999999999988763 3666666666666667 456666666665544
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
...++ .--..+|.++..+|+ .++.+..|.++.+.+|+....+.++|.+..
T Consensus 210 ~~~~~---------------~~~~~la~~~~~lg~-------------~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 210 APDDP---------------DLWDALAAAYLQLGR-------------YEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp -HTSC---------------CHCHHHHHHHHHHT--------------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred CcCHH---------------HHHHHHHHHhccccc-------------cccccccccccccccccccccccccccccc
Confidence 32211 112346888877766 367889999999999999998888886643
No 244
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=85.70 E-value=25 Score=43.99 Aligned_cols=204 Identities=14% Similarity=0.180 Sum_probs=117.4
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc---
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--- 674 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--- 674 (1874)
..++..|+..++.+++.-|.....++.++-...+.. .+.+|+.+...+...-+......--.+.++.+|.++....
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~-r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~pl 210 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNL-RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPL 210 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS-
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCC
Confidence 467888889999999999999999999987766543 4667776666655444431233334567888888886432
Q ss_pred ------------------cccccchHHHHHHHHHHhhccCC-------------CCCChhHHHHHHHHHHHHHHhcc-cc
Q 000196 675 ------------------RLIRPYIAPIHKALVARLLEGTG-------------INANNGIISGVLVTVGDLARVGG-FG 722 (1874)
Q Consensus 675 ------------------~~~~py~~~il~~ll~~l~~~~~-------------~~~~~~v~~~~~~~l~~La~~~g-~~ 722 (1874)
+.+..|.+++...+...+..+.. +..++.-....+.-++++....+ +.
T Consensus 211 k~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~ 290 (409)
T PF01603_consen 211 KEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEE 290 (409)
T ss_dssp -HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHH
T ss_pred cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHH
Confidence 22234555666555555543200 00011111122334445555444 46
Q ss_pred hhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHH--HHHhhccccccccccchHHHHHHHHHhc----CCCCHHHHHHHHH
Q 000196 723 MRQYISELMPLIVEALLDGAAVTKREVAVSTLG--QVVQSTGYVITPYNEYPQLLGLLLKMLN----GELVWSTRREVLK 796 (1874)
Q Consensus 723 ~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg--~l~~~~~~~i~p~~~~p~ll~~Ll~~l~----~~~~~~vr~~al~ 796 (1874)
+.+....++..+..++... +..+-+.|+..+. .++.. +..+ ...+++.+...|. +.=+..+|..+..
T Consensus 291 f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~l----i~~~--~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~ 363 (409)
T PF01603_consen 291 FQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSL----ISQN--SRVILPIIFPALYRNSKNHWNQTVRNLAQN 363 (409)
T ss_dssp HHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHH----HHCT--HHHHHHHHHHHHSSTTSS-SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHH----HHhC--hHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777888888888888754 4556555544332 11111 1111 1345666666553 2226689999999
Q ss_pred HHHHhcccCccch
Q 000196 797 VLGIMGALDPHAH 809 (1874)
Q Consensus 797 ~lg~lgaldp~~~ 809 (1874)
++..+.-+||-.+
T Consensus 364 vl~~l~~~d~~lf 376 (409)
T PF01603_consen 364 VLKILMEMDPKLF 376 (409)
T ss_dssp HHHHHHTTSHHHH
T ss_pred HHHHHHHhCHHHH
Confidence 9999988888754
No 245
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.51 E-value=23 Score=43.00 Aligned_cols=86 Identities=23% Similarity=0.179 Sum_probs=63.7
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhh-----hhcHHHHH
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDV-----QLKESWYE 1365 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~-----~~~~~~~E 1365 (1874)
||++=.--++.+-||+|......= .++++..+..|-+.|.+|+.++.|.|..+.+-.-.+. -..+..||
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 566666667777899998655421 2566788999999999999999999998865432222 12344699
Q ss_pred HhcCHHHHHHHHHHHHh
Q 000196 1366 KLQRWDDALKAYTNKAS 1382 (1874)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~ 1382 (1874)
++++.++|-.+|++-++
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999987654
No 246
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=85.46 E-value=74 Score=36.43 Aligned_cols=177 Identities=15% Similarity=0.193 Sum_probs=104.5
Q ss_pred HHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHH
Q 000196 606 AALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIH 685 (1874)
Q Consensus 606 ~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il 685 (1874)
...+..++++....++.|..++.+.- ...|. +.+.+..+... +..+.+..+.+++..+.+..+..+ |++.+++
T Consensus 8 ~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~----v~~~L~~L~~~-~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L 80 (234)
T PF12530_consen 8 KLGKISDPELQLPLLEALPSLACHKN-VCVPP----VLQTLVSLVEQ-GSLELRYVALRLLTLLWKANDRHF-PFLQPLL 80 (234)
T ss_pred HhcCCCChHHHHHHHHHHHHHhccCc-cchhH----HHHHHHHHHcC-CchhHHHHHHHHHHHHHHhCchHH-HHHHHHH
Confidence 35567789999999999999998873 33333 33444444444 334444567778888877766544 6666665
Q ss_pred HHHHHHhhccCC-CCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc
Q 000196 686 KALVARLLEGTG-INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1874)
Q Consensus 686 ~~ll~~l~~~~~-~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~ 764 (1874)
..+.-....... .+.......+...++..++...++ +-.++++.+...|.+.++...+..|+.++..+++.. +
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~--v 154 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE--V 154 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--h
Confidence 554333222111 112333334444566677766555 667788888888833335668888999999998543 3
Q ss_pred ccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000196 765 ITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLG 799 (1874)
Q Consensus 765 i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg 799 (1874)
++.+ .....+..-+..+..+.+-......++
T Consensus 155 vd~~----s~w~vl~~~l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 155 VDFY----SAWKVLQKKLSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred ccHH----HHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 3433 345555555544444444444334433
No 247
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=85.44 E-value=9.4 Score=46.94 Aligned_cols=109 Identities=18% Similarity=0.165 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+..+++. ...++++.|...+.++.+.+ |.+..-.||++-..++ ..+|++.+++.+++...
T Consensus 172 v~~Ll~~l---~~t~~~~~ai~lle~L~~~~-------------pev~~~LA~v~l~~~~---E~~AI~ll~~aL~~~p~ 232 (395)
T PF09295_consen 172 VDTLLKYL---SLTQRYDEAIELLEKLRERD-------------PEVAVLLARVYLLMNE---EVEAIRLLNEALKENPQ 232 (395)
T ss_pred HHHHHHHH---hhcccHHHHHHHHHHHHhcC-------------CcHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCC
Confidence 45555555 44678999999999987643 4566667787776664 57999999987754211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
+ +..+...++++... +..+.+++..++|++..|...++|+.+|..+-.
T Consensus 233 ------------------d----~~LL~~Qa~fLl~k------~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~ 280 (395)
T PF09295_consen 233 ------------------D----SELLNLQAEFLLSK------KKYELALEIAKKAVELSPSEFETWYQLAECYIQ 280 (395)
T ss_pred ------------------C----HHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 1 44455566666543 345788999999999999999999999988654
No 248
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.33 E-value=1.3e+02 Score=39.04 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=108.2
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
+..++.+.++-.|...+.+++.-+.-. + =+.++.+|+.++++|++.+||++++.+|+
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GT-----------------g------nnkair~lLh~aVsD~nDDVrRaAVialG 580 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGT-----------------G------NNKAIRRLLHVAVSDVNDDVRRAAVIALG 580 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhcc-----------------C------chhhHHHhhcccccccchHHHHHHHHHhe
Confidence 335566778889987776665544211 0 13466788899999999999999999986
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCC-CHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 587 GNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 587 ~~~~f~~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
= -.|. .|+.++..+..|.+. ++.||-.|.-+||-.+.-.+.. .-+.+|..+.++ ...-.|+-|+-.
T Consensus 581 F-Vl~~----dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D-~~~fVRQgAlIa 647 (929)
T KOG2062|consen 581 F-VLFR----DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSD-PVDFVRQGALIA 647 (929)
T ss_pred e-eEec----ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcC-hHHHHHHHHHHH
Confidence 1 1222 245566666666654 7899999999999777665421 233555556565 556778888888
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhcc
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEG 695 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~ 695 (1874)
++.+.-.+.+..-|-+..|-+.+.+.+.+.
T Consensus 648 ~amIm~Q~t~~~~pkv~~frk~l~kvI~dK 677 (929)
T KOG2062|consen 648 LAMIMIQQTEQLCPKVNGFRKQLEKVINDK 677 (929)
T ss_pred HHHHHHhcccccCchHHHHHHHHHHHhhhh
Confidence 888877777777788888888888888774
No 249
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.17 E-value=3.1 Score=52.05 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=77.1
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
+..+++++-+.||..|+..+|+.+...+..+ -...+.+++.++....-.|...+||.++++.|+
T Consensus 225 l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i----------------P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~ 288 (1005)
T KOG1949|consen 225 LYSLLEDPYPMVRSTAILGVCKITSKFWEMI----------------PPTILIDLLKKITDELAFDTSSDVRCSVFKGLP 288 (1005)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHHHHc----------------CHHHHHHHHHHHHHHhhhccchheehhHhcCcH
Confidence 4567889999999999999998876555432 134567777777777678888999999999885
Q ss_pred CCCCcchhhcc---HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCC
Q 000196 587 GNRGFDDFLAQ---ADCLSAIFAALNDEDFDVREYAISVAGRLSEKN 630 (1874)
Q Consensus 587 ~~~~f~~~L~~---~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~ 630 (1874)
. -.+.-++. ...++.+-.+++|.+..||.+++++|-++-..-
T Consensus 289 ~--~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr 333 (1005)
T KOG1949|consen 289 M--ILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR 333 (1005)
T ss_pred H--HHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhh
Confidence 2 11111111 124666667889999999999999998876544
No 250
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.12 E-value=84 Score=40.24 Aligned_cols=74 Identities=14% Similarity=0.186 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHH
Q 000196 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMA 1447 (1874)
Q Consensus 1369 ~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~ 1447 (1874)
+|.+|+.+|++..+...|.. =.....-|.+.+|++|+.-....+..-. .+| +|.+--.++--..|||.+=-.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~---wvl~q~GrayFEl~~Y~~a~~~F~~~r~-~~p-~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG---WVLSQLGRAYFELIEYDQAERIFSLVRR-IEP-YRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc-ccccchhHHHHHHHHHHhhHHHH
Confidence 58999999998332222210 0112233445677777655444432210 011 12222246667999998744443
No 251
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.91 E-value=23 Score=46.97 Aligned_cols=174 Identities=14% Similarity=0.102 Sum_probs=89.7
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh--
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR-- 231 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~-- 231 (1874)
+..+.+|+.+.+-.. . .|..++..+....+.-=..++..+++.+-..-.-+++.+|..|.-+++............
T Consensus 359 ~~~i~~~i~~~~~~~-~-ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~ 436 (574)
T smart00638 359 LKFIKQWIKNKKITP-L-EAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP 436 (574)
T ss_pred HHHHHHHHHcCCCCH-H-HHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 666777876543322 2 233344444444322223344444444333333446789999999998776544422211
Q ss_pred --hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000196 232 --WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1874)
Q Consensus 232 --~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la 309 (1874)
...++.+.+...+..+.... +.+.+...+.+||-+-. .-..+.+..++ ......+..+|.+++.++..++
T Consensus 437 ~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLGN~g~---~~~i~~l~~~l----~~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 437 DFVLEELLKYLHELLQQAVSKG-DEEEIQLYLKALGNAGH---PSSIKVLEPYL----EGAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHhcC-CchheeeHHHhhhccCC---hhHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHH
Confidence 12344555555555544443 34556777777764321 11112222221 1122346789999999999888
Q ss_pred hhChhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHH
Q 000196 310 HFLRDRFVTNYLKICMNHILTVLRIP----AERDSGFIAL 345 (1874)
Q Consensus 310 ~~~~~~f~~~yl~~~~~~Ll~~L~~~----~~R~~a~~al 345 (1874)
...+.. +.+.++.+..+. ..|.+|+..|
T Consensus 509 ~~~p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 509 KRDPRK--------VQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HhCchH--------HHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 765543 233344444432 2477777643
No 252
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.85 E-value=3e+02 Score=42.84 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=40.1
Q ss_pred cHHHHHHHHHHHHhhcccccc-----cchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000196 1042 PVDIRRAAIETLTRLIPRVQV-----TGHISSLVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1874)
Q Consensus 1042 ~~~vr~~ai~~l~~l~~~~~~-----~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1874)
...+|..++++++..+...++ .++-..|+..+...+.++.+++...+..++....
T Consensus 1246 l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~ 1305 (3550)
T KOG0889|consen 1246 LVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVL 1305 (3550)
T ss_pred cccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhh
Confidence 345688888888887766543 4567788888888888877888877777665444
No 253
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.72 E-value=1.6e+02 Score=39.61 Aligned_cols=112 Identities=14% Similarity=0.054 Sum_probs=65.6
Q ss_pred HHHHHHHhhcchhHHHHHHHHHhHhHhhh----ChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhh
Q 000196 283 AEIVLRYLEHRDRLVRLSITSLLPRIAHF----LRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFH 358 (1874)
Q Consensus 283 ~~~ll~~~~~~~~~vr~~~~~~i~~la~~----~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p 358 (1874)
.-.|+..+-+.++.|+..+..++-++|.. .+..+++.-.+-++..+...|+....-..+-..+.-+....+.+..|
T Consensus 591 ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L~~~~~s~~~~~Vl~vVl~~s~~~~i~ 670 (1014)
T KOG4524|consen 591 LYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRLNTSGMSPRVPDVLMVVLQYSDYGTIP 670 (1014)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHhccCCCCchhHHHHHHHhhcCCCCchh
Confidence 33455556678888988888777777742 24555544444455555555543322233444444455666667789
Q ss_pred hhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhC
Q 000196 359 YLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1874)
Q Consensus 359 ~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g 394 (1874)
++.++++.+...+-..+...+..-+..+-.+.+..|
T Consensus 671 ~l~dvvq~i~~~lD~yH~~~~~~~~~ll~s~ik~~~ 706 (1014)
T KOG4524|consen 671 NLKDVVQTIFKLLDYYHGYSCLQFFQLLHSIIKEMK 706 (1014)
T ss_pred hHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHh
Confidence 999999999988855544433333333333444444
No 254
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=84.41 E-value=13 Score=49.94 Aligned_cols=171 Identities=15% Similarity=0.189 Sum_probs=86.3
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc----
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE---- 229 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~---- 229 (1874)
+..+.+|+....-... .|..++..+....+.--...+..+++.+-..-..+++.+|.+|.-+++.+..-.....
T Consensus 397 v~~i~~~I~~~~~~~~--ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDD--EAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHTT-S-HH--HHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHcCCCCHH--HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 5566677764332222 2334455555443222234444555444333334567899999999988776554331
Q ss_pred ------hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcc---hhHHHHH
Q 000196 230 ------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHR---DRLVRLS 300 (1874)
Q Consensus 230 ------~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~---~~~vr~~ 300 (1874)
......+...+.+.+..+.... +.+.+..+|.+||-+-. ......+..+.... +..+|.+
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 1122233333444444333333 35667888888876531 12333344444433 7789999
Q ss_pred HHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHH
Q 000196 301 ITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP----AERDSGFIAL 345 (1874)
Q Consensus 301 ~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~----~~R~~a~~al 345 (1874)
|+.++..++...+.. +.+.++.++.+. ..|.+|+..|
T Consensus 544 Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 544 AIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp HHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 999999887665543 333444444443 2477777543
No 255
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=84.22 E-value=87 Score=36.17 Aligned_cols=200 Identities=12% Similarity=0.136 Sum_probs=106.9
Q ss_pred cchhHHH---HHHHHHHHHhh-cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHH----HH
Q 000196 166 VEYRRFA---AVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQ----WY 237 (1874)
Q Consensus 166 ~~~~r~a---A~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~----~~ 237 (1874)
+++.|.- .+.+|.-+-.. -|..+ .+++.|.+-.+|..++..|.--|+..++.+++ +-+.+.... .-
T Consensus 53 NenhrekttlcVscLERLfkakegahl---apnlmpdLQrGLiaddasVKiLackqigcilE---dcDtnaVseillvvN 126 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHL---APNLMPDLQRGLIADDASVKILACKQIGCILE---DCDTNAVSEILLVVN 126 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhh---chhhhHHHHhcccCCcchhhhhhHhhhhHHHh---cCchhhHHHHHHHhh
Confidence 4556655 33344333332 22233 34455666689998888887777777666544 333222222 23
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH-HHH-HHHHHh-hcchhHHHHHHHHHhHhHhhhChh
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE-VAE-IVLRYL-EHRDRLVRLSITSLLPRIAHFLRD 314 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~-i~~-~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~ 314 (1874)
..+++.+...+...+ .++..+|+.-+..+..... .|..-|+. +.+ .=++.+ -..+..+|-.|..+|-.+...++.
T Consensus 127 aeilklildcIgged-deVAkAAiesikrialfpa-aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 127 AEILKLILDCIGGED-DEVAKAAIESIKRIALFPA-ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhcHH-HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 467788888877764 5778888888777654211 11111110 000 000101 123567788888888888777775
Q ss_pred hHHHHHH--HHHHHHHHHhhcCCCC---cchHHHHHHHHHhhchhhhhhhhH--HHHHHHHHhhcCCCCC
Q 000196 315 RFVTNYL--KICMNHILTVLRIPAE---RDSGFIALGEMAGALDGELFHYLP--TITSHLREAIAPRRGK 377 (1874)
Q Consensus 315 ~f~~~yl--~~~~~~Ll~~L~~~~~---R~~a~~alg~la~~v~~~~~p~l~--~i~~~l~~~L~~~~~~ 377 (1874)
.. +|. ..++..|..-|+-.++ +...++....++..-.. ..|++ .+++.|...+...+.+
T Consensus 205 sa--neckkSGLldlLeaElkGteDtLVianciElvteLaeteHg--reflaQeglIdlicnIIsGadsd 270 (524)
T KOG4413|consen 205 SA--NECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHG--REFLAQEGLIDLICNIISGADSD 270 (524)
T ss_pred HH--hHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhh--hhhcchhhHHHHHHHHhhCCCCC
Confidence 32 233 3456666666654343 44555555555544322 24554 3666666666544433
No 256
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=84.04 E-value=1.4e+02 Score=38.30 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=72.8
Q ss_pred ChhHHHHHHHHHHHHHHhcc--cchhh----cHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHH
Q 000196 701 NNGIISGVLVTVGDLARVGG--FGMRQ----YISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g--~~~~~----~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~l 774 (1874)
+-.++.++++.++.+..... +++.. -+..++..+.+.|.|. ++..|..|+..+.+++.....- | ....++
T Consensus 312 s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~sk~--~-~~r~ev 387 (1128)
T COG5098 312 SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDLNSKT--V-GRRHEV 387 (1128)
T ss_pred chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCcccc--c-chHHHH
Confidence 66678888888887765332 23444 4456677777778886 6889999999999998765321 2 123467
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccc
Q 000196 775 LGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1874)
Q Consensus 775 l~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~ 808 (1874)
.......+.+ .+.-||+.|++.++.+-.-.||.
T Consensus 388 ~~lv~r~lqD-rss~VRrnaikl~SkLL~~HPF~ 420 (1128)
T COG5098 388 IRLVGRRLQD-RSSVVRRNAIKLCSKLLMRHPFA 420 (1128)
T ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHhcCChh
Confidence 7777777764 36799999999998776556765
No 257
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.01 E-value=34 Score=47.72 Aligned_cols=140 Identities=12% Similarity=0.093 Sum_probs=87.8
Q ss_pred hcCCCcchhHHHHHHHHHHHHhh--cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 000196 161 LRGDRVEYRRFAAVLILKEMAEN--ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYY 238 (1874)
Q Consensus 161 l~~~~~~~~r~aA~~~l~~la~~--~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~ 238 (1874)
...+..|..|.+.+.++....-+ .+ ........|...+...+.|....||+.|+.+|.-++.--.-... .
T Consensus 1535 ~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~-------~ 1606 (1710)
T KOG1851|consen 1535 TADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFV-------S 1606 (1710)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccc-------h
Confidence 34677889999999998876654 33 45678889999999999999999999999998866532110000 0
Q ss_pred HHHHHHHhhccCC-CChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000196 239 RMFEATQDGLGRN-APVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1874)
Q Consensus 239 ~i~~~~~~~l~~~-~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la 309 (1874)
..-.....+.... .+....|||.+++|+++-..+=.+...+.+.+..+-+..+ .+..+++++-.++....
T Consensus 1607 ~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~-e~~~i~~tvkktvseFr 1677 (1710)
T KOG1851|consen 1607 DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR-ESAAIKQTVKKTVSEFR 1677 (1710)
T ss_pred HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC-CchHHHHHHHHHHHHHH
Confidence 1111111222221 2356789999999999875543333344444433333333 33667777777666443
No 258
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=83.99 E-value=15 Score=45.18 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000196 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1874)
Q Consensus 1571 ~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~ 1650 (1874)
.+.+-++-+.+.|++..|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.- ..
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----------~~~a~~~~a~~~~~~g~---~~eAl~~~~~Al~l-~P-- 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPN----------NAELYADRAQANIKLGN---FTEAVADANKAIEL-DP-- 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-Cc--
Confidence 4667788999999999999999999887663 46777888888888885 68999998887642 10
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
..+.+|+.+|.-...+ ...++.+..|++|++++|+...++...+.....+
T Consensus 68 -------------------~~~~a~~~lg~~~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 -------------------SLAKAYLRKGTACMKL------EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------------------CCHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 1234455555544443 3467889999999999999888766666554444
No 259
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.95 E-value=13 Score=43.81 Aligned_cols=142 Identities=14% Similarity=0.187 Sum_probs=87.3
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc---------chHHHHHHHHHHHHHhhC---CCChHhHHHHHHHH
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV---------LPALRRHLIQLLTYLEQS---SADNKCREESAKLL 666 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v---------~p~l~~~l~~~l~~l~~~---~~~~~~r~~a~~~L 666 (1874)
-+++.++..+.|.+.++|..++.++..+....|... ...+.+.+..++..+-.. +.+...-..+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 467888888888899999999999999988777654 233333344333322111 01122223444455
Q ss_pred HHHHHhC-ccccccc---hHHH-HHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC
Q 000196 667 GCLIRNC-ERLIRPY---IAPI-HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG 741 (1874)
Q Consensus 667 ~~l~~~~-~~~~~py---~~~i-l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~ 741 (1874)
-.++... .+.-.++ +..+ .+.+++.+.-... -..+.++...+..+..+....|-....|+..++|.+.+.+++.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~-~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESS-FSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccc-cCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 5554432 1111122 2222 2335554443210 0147788888888999999999999999999999999988765
No 260
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.80 E-value=56 Score=41.06 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcc
Q 000196 1551 VWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDL 1630 (1874)
Q Consensus 1551 ~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~ 1630 (1874)
.=+-+|..-..|....++++.|.++--.=-..++-+.|..+|.+.++++|+ .-.+.++-|-..-.+|.
T Consensus 301 L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~----------NleaLmaLAVSytNeg~-- 368 (579)
T KOG1125|consen 301 LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT----------NLEALMALAVSYTNEGL-- 368 (579)
T ss_pred chHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHhhhhh--
Confidence 344556666666665567888888877777788899999999999999874 24566666666666664
Q ss_pred hHHHHHHHHHHHHH
Q 000196 1631 KRKEAFARLQTLAM 1644 (1874)
Q Consensus 1631 ~~~~Al~~l~~~~~ 1644 (1874)
..+|+..|.+-+.
T Consensus 369 -q~~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 369 -QNQALKMLDKWIR 381 (579)
T ss_pred -HHHHHHHHHHHHH
Confidence 5789999988654
No 261
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.53 E-value=22 Score=42.09 Aligned_cols=147 Identities=15% Similarity=0.221 Sum_probs=99.2
Q ss_pred cchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc----h-h-chHHHHHHHHHhhc--------CCchhH
Q 000196 145 MTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF----N-V-HVAEFVDAIWVALR--------DPTLAV 210 (1874)
Q Consensus 145 ~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~----~-~-~l~~il~~i~~~l~--------D~~~~V 210 (1874)
...++.+..++.++..+. +.....|.-|+.++..+.+++|... . . ...-+.+++..++. |....+
T Consensus 112 ~i~~~~~liiP~iL~llD-D~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLD-DYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred hHHHhhhHHHhhHHHHhc-CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 345566667777776664 4466788999999999999988643 2 2 34445577888887 777888
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH-HHhhccCCCC---hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHH
Q 000196 211 RERAVEALRACLRVIEKRETRWRVQWYYRMFEA-TQDGLGRNAP---VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIV 286 (1874)
Q Consensus 211 R~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~-~~~~l~~~~~---~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~l 286 (1874)
=.+|..|+..+...........+..++.+++.+ +..++.-... .+.+...+..+..++...|-....|+.++...+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888999988887665433333455555554443 6666543222 455666666777778777778888888887777
Q ss_pred HHHhhc
Q 000196 287 LRYLEH 292 (1874)
Q Consensus 287 l~~~~~ 292 (1874)
...+.+
T Consensus 271 ~~~l~n 276 (282)
T PF10521_consen 271 SQILEN 276 (282)
T ss_pred HHHhcC
Confidence 665544
No 262
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=83.53 E-value=26 Score=42.54 Aligned_cols=151 Identities=14% Similarity=0.103 Sum_probs=94.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccch
Q 000196 602 SAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYI 681 (1874)
Q Consensus 602 ~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~ 681 (1874)
.-+..++.+++...|..|+..|..=.... .++|+|-+++.+.++.-.. .+...-...++++..|+.+..=.+.||+
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~tD~gl~--~LlPyf~~fI~~~v~~n~~--~nl~~L~~lm~~v~ALl~N~~l~le~Yl 256 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRTDPGLQ--QLLPYFVRFIAEGVTVNLD--QNLALLIYLMRMVRALLDNPNLHLEPYL 256 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCCch--hhhhHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHHHhcCCCCchHHhH
Confidence 33444555667778888887765322222 3678888777665543111 0233334455666666666555678999
Q ss_pred HHHHHHHHHHhhccCC-----CCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh-hHHHHHHHHH
Q 000196 682 APIHKALVARLLEGTG-----INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT-KREVAVSTLG 755 (1874)
Q Consensus 682 ~~il~~ll~~l~~~~~-----~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~-~r~~A~~~Lg 755 (1874)
..+++.++..+-.... .+....++..+...++.++...+.......+.++..+.+.|.|..... ..=-|+.+|+
T Consensus 257 h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~ 336 (343)
T cd08050 257 HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLS 336 (343)
T ss_pred HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH
Confidence 9999988877643311 123567888899999999998887665566677778888887754322 2334455544
Q ss_pred H
Q 000196 756 Q 756 (1874)
Q Consensus 756 ~ 756 (1874)
.
T Consensus 337 ~ 337 (343)
T cd08050 337 A 337 (343)
T ss_pred H
Confidence 4
No 263
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=83.20 E-value=5.1 Score=35.53 Aligned_cols=66 Identities=20% Similarity=0.354 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
|+...|...+....+.|+++.|...+.++..++|+ .+.+.+-.+...|.+|+ +..+|+..++..++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~----------~~~~~~~~g~~~~~~~~--~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN----------NAEAYYNLGLAYMKLGK--DYEEAIEDFEKALK 66 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT----------HHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHH
Confidence 45789999999999999999999999999988763 47788999999999984 25789998887653
No 264
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.13 E-value=1e+02 Score=37.50 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=52.2
Q ss_pred hHHHHHHHhCCCCH----HHHHHHHHHHHhhhcCCcCccc------------------------hHHHHHHHHHHHHHhh
Q 000196 600 CLSAIFAALNDEDF----DVREYAISVAGRLSEKNPAYVL------------------------PALRRHLIQLLTYLEQ 651 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~----~VR~~a~~~l~~l~~~~p~~v~------------------------p~l~~~l~~~l~~l~~ 651 (1874)
.+..|......++. .+++.+-+.|..++......+. +.-.+.|..++..+..
T Consensus 205 ~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp 284 (330)
T PF11707_consen 205 TLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKP 284 (330)
T ss_pred HHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCC
Confidence 45555554444444 8999999999998863222221 1223667777776665
Q ss_pred CCCChHhHHHHHHHHHHHHHhCccccccchHHHH
Q 000196 652 SSADNKCREESAKLLGCLIRNCERLIRPYIAPIH 685 (1874)
Q Consensus 652 ~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il 685 (1874)
. ++..+ .+++-.+.+++|+.+.||+...-
T Consensus 285 ~-e~~~q----~~Lvl~Il~~~PeLva~Y~~~~~ 313 (330)
T PF11707_consen 285 W-EDDRQ----QELVLKILKACPELVAPYFNNLP 313 (330)
T ss_pred C-ccHHH----HHHHHHHHHHChHHHHHHHHhhh
Confidence 5 44443 35677888999999999987653
No 265
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.95 E-value=6.8 Score=34.73 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~ 1755 (1874)
..++.+..|.+|++++|+...+|..+|..+.+.- +-...|++.|-++|++
T Consensus 18 ~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-------------~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 18 DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-------------KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-------------THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------------ccHHHHHHHHHHHHHc
Confidence 3578899999999999999999999998876521 1334788888888876
No 266
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=82.78 E-value=77 Score=35.99 Aligned_cols=97 Identities=20% Similarity=0.265 Sum_probs=68.7
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
+.+..+...+.|++.-.|..+..++|+|-.-. -.|.+.+.|.. ....+-+|.+|+.+||.++.
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~---ai~~L~k~L~d-------~~E~pMVRhEaAeALGaIa~------- 249 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQSPA---AIPSLIKVLLD-------ETEHPMVRHEAAEALGAIAD------- 249 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccchh---hhHHHHHHHHh-------hhcchHHHHHHHHHHHhhcC-------
Confidence 56788888999999999999999999986533 35777765532 12457889999999999974
Q ss_pred cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc
Q 000196 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1874)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1874)
+..+++|...+.|+ .+-|+..+..+++.+--..|
T Consensus 250 ---e~~~~vL~e~~~D~-----~~vv~esc~valdm~eyens 283 (289)
T KOG0567|consen 250 ---EDCVEVLKEYLGDE-----ERVVRESCEVALDMLEYENS 283 (289)
T ss_pred ---HHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHHhcc
Confidence 33456666667764 55566666666665543333
No 267
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=82.62 E-value=1.4e+02 Score=37.38 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...+..++....+.|..+.|.+.|.+..+..+ +|.....++.+. .| +..++++.+++..+..
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-----------~~~l~~l~~~l~--~~---~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-----------DERLVLLIPRLK--TN---NPEQLEKVLRQQIKQH 324 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-----------CHHHHHHHhhcc--CC---ChHHHHHHHHHHHhhC
Confidence 5578899999999999999999999998876322 355555555542 24 3577899888877543
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
..+ ..-.-..++.++..++| .+...+|+++.+..|+. ..+..+|....+.
T Consensus 325 P~~---------------~~l~l~lgrl~~~~~~~-------------~~A~~~le~al~~~P~~-~~~~~La~~~~~~- 374 (398)
T PRK10747 325 GDT---------------PLLWSTLGQLLMKHGEW-------------QEASLAFRAALKQRPDA-YDYAWLADALDRL- 374 (398)
T ss_pred CCC---------------HHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc-
Confidence 211 11123456766666666 56778999999999875 4566677664431
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~ 1755 (1874)
+ -...|..+|-+++.+
T Consensus 375 ------g-------~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 375 ------H-------KPEEAAAMRRDGLML 390 (398)
T ss_pred ------C-------CHHHHHHHHHHHHhh
Confidence 1 123568888888765
No 268
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=82.52 E-value=43 Score=40.19 Aligned_cols=58 Identities=31% Similarity=0.369 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcchH-HHHHHHHHHHhhhc---CCCcchhHHHHHHHHHHHHhh
Q 000196 123 RDREILVLASKVLGHLARAGGAMTAD-EVEFQVKMALDWLR---GDRVEYRRFAAVLILKEMAEN 183 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~~g~~~~~-~v~~~~~~~~~~l~---~~~~~~~r~aA~~~l~~la~~ 183 (1874)
.|+.+.+-++-+||..+.+||..... .| =+++-|||- ..+++-.|+-|+++...|+.+
T Consensus 276 t~P~lLRH~ALAL~N~~L~~~~a~qrrmv---eKr~~EWLF~LA~skDel~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 276 TDPALLRHCALALGNCALHGGQAVQRRMV---EKRAAEWLFPLAFSKDELLRLHACLAVAVLATN 337 (832)
T ss_pred CCHHHHHHHHHHhhhhhhhchhHHHHHHH---HhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence 47889999999999999987654322 33 367778974 456888999999998888765
No 269
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=82.39 E-value=2.8 Score=37.07 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=39.7
Q ss_pred HhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000196 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1874)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1874)
+.|+|++|++.|++.+...++. .+...++.+|+.+.|+++.-....+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDN---PEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5689999999999998876553 467789999999999999887776654
No 270
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.69 E-value=22 Score=47.21 Aligned_cols=157 Identities=14% Similarity=0.120 Sum_probs=99.5
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH-HHHHHHHhhCCC-ChHhHHHHHHHHHHHHHhCcccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL-IQLLTYLEQSSA-DNKCREESAKLLGCLIRNCERLI 677 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l-~~~l~~l~~~~~-~~~~r~~a~~~L~~l~~~~~~~~ 677 (1874)
+.+.++.+|+.+-.+.|..-+-|+.++....|..-..-+.+-- .-++..+..++. +++.|..|+-.|..+++..+..-
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 5677888889888999998888999888777653211111100 001111222112 24788899999999998754221
Q ss_pred ccc-hHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhccc-chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHH
Q 000196 678 RPY-IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGF-GMRQYISELMPLIVEALLDGAAVTKREVAVSTLG 755 (1874)
Q Consensus 678 ~py-~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~-~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg 755 (1874)
+.- -..++.+++..+.++ ..+-+++=++.|||.|=+.... .+.--=+..-..++..|.|+ ..++|.+|+.+||
T Consensus 593 ~acl~~~li~iCle~lnd~----~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDD----PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALG 667 (1387)
T ss_pred HHhccccHHHHHHHHhcCC----ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHH
Confidence 111 135677888888874 2567788889999988654321 11111122344566677775 6899999999999
Q ss_pred HHHhhc
Q 000196 756 QVVQST 761 (1874)
Q Consensus 756 ~l~~~~ 761 (1874)
.++.+.
T Consensus 668 tfl~~~ 673 (1387)
T KOG1517|consen 668 TFLSNG 673 (1387)
T ss_pred HHhccc
Confidence 998864
No 271
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=81.49 E-value=2.7 Score=39.20 Aligned_cols=77 Identities=23% Similarity=0.243 Sum_probs=46.3
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc---hhh-hhhcHHHHHHhcCHHHHH
Q 000196 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK---ELD-VQLKESWYEKLQRWDDAL 1374 (1874)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~---~~~-~~~~~~~~E~lg~W~~Al 1374 (1874)
+.|..|+.+.|..+...+++ + ....+-.|...|-+.|+.+.+..+++.... +.+ .-+.+.-+.++|+|++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~---~-~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTN---P-NSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGT---H-HHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCC---h-hHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 67888999988877643210 1 233455578888888888888877754111 111 112244577788888888
Q ss_pred HHHHH
Q 000196 1375 KAYTN 1379 (1874)
Q Consensus 1375 ~~y~~ 1379 (1874)
+.|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 87764
No 272
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=81.38 E-value=15 Score=37.78 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=70.7
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLT 647 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~ 647 (1874)
..++|+..-..+++.++... -...+.++.|-.-++..++.++..|+.+|..++++++..+...+ ++++.+++.
T Consensus 13 ~~~~D~~~il~icd~I~~~~-----~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 13 LEEPDWALNLELCDLINLKP-----NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred cCCccHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 34578888778888775321 11246788888889999999999999999999999987553333 345555444
Q ss_pred HHhhC-CCChHhHHHHHHHHHHHHHhCcc
Q 000196 648 YLEQS-SADNKCREESAKLLGCLIRNCER 675 (1874)
Q Consensus 648 ~l~~~-~~~~~~r~~a~~~L~~l~~~~~~ 675 (1874)
-+... ..+...+..++.++..-....+.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44331 25667888888888888776653
No 273
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=80.95 E-value=1.8e+02 Score=37.38 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1874)
-..|+-+++.--+.|....|...|.++++++|+
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 467888888888888888888888887777665
No 274
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=80.92 E-value=1.7e+02 Score=37.05 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=79.1
Q ss_pred cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1563 LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1563 l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
...+++.+....-|.-|=..+++..+.+....++..+|- ++.+..-++-.+...|+.. +=+..-.++
T Consensus 238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpf----------h~~~~~~~ia~l~el~~~n---~Lf~lsh~L 304 (611)
T KOG1173|consen 238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPF----------HLPCLPLHIACLYELGKSN---KLFLLSHKL 304 (611)
T ss_pred hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCC----------CcchHHHHHHHHHHhcccc---hHHHHHHHH
Confidence 334567778888888899999999999999998887652 3455555666888888642 233222334
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
++.... .|--++-+|-+-.-+ ...++...+|.+|+.+||..+.||..+|+..
T Consensus 305 V~~yP~----------------------~a~sW~aVg~YYl~i------~k~seARry~SKat~lD~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 305 VDLYPS----------------------KALSWFAVGCYYLMI------GKYSEARRYFSKATTLDPTFGPAWLAFGHSF 356 (611)
T ss_pred HHhCCC----------------------CCcchhhHHHHHHHh------cCcHHHHHHHHHHhhcCccccHHHHHHhHHh
Confidence 332211 011122233333222 2357899999999999999999999998764
Q ss_pred H
Q 000196 1723 T 1723 (1874)
Q Consensus 1723 ~ 1723 (1874)
.
T Consensus 357 a 357 (611)
T KOG1173|consen 357 A 357 (611)
T ss_pred h
Confidence 4
No 275
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=80.90 E-value=4.3 Score=32.43 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000196 1674 VYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1874)
Q Consensus 1674 ~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1874)
.++.+|.+..+. ..+++..+.|+++++.+|++..+|+.+|.
T Consensus 3 ~~~~la~~~~~~------G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRL------GQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 355666666654 35789999999999999999999999884
No 276
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.87 E-value=4.3 Score=50.70 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=74.5
Q ss_pred hhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000196 1024 EHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF 1103 (1874)
Q Consensus 1024 ~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f 1103 (1874)
+|...-+|.+.+.+++.+.+.+|..|+-.+|++.-+. ...+..+.+-|.|-|.+.+..+|+.++-++..++..-.-..
T Consensus 929 ~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf--N~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KV 1006 (1128)
T COG5098 929 EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF--NTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKV 1006 (1128)
T ss_pred HHHHHHHHHHHHHHhhCCCcceeccceeeccccceeh--hhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceee
Confidence 4555567888888887777889999999999997764 47788899999999999999999999999999998766666
Q ss_pred ccchhhHHHHHHh
Q 000196 1104 TIFIPSIHKLLLK 1116 (1874)
Q Consensus 1104 ~~~ip~i~~~l~~ 1116 (1874)
.-+++.+...+..
T Consensus 1007 KGqlg~ma~~L~d 1019 (1128)
T COG5098 1007 KGQLGKMALLLTD 1019 (1128)
T ss_pred ccchhhhHhhccC
Confidence 6677777776644
No 277
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=80.87 E-value=32 Score=35.18 Aligned_cols=108 Identities=19% Similarity=0.101 Sum_probs=73.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++.......+..+.+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY----------NSRYWLGLAACCQMLKE---YEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC
Confidence 34667788899999999999999999888776542 46777778888877774 578888887655321
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAW 1715 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w 1715 (1874)
.. .......+|.+|...|+ .+..+..|+.+.+++|+..+.+
T Consensus 82 p~---------------~~~~~~~la~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PD---------------DPRPYFHAAECLLALGE-------------PESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CC---------------ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhccccchHH
Confidence 10 01112234555555544 4667788999999998765533
No 278
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=80.75 E-value=21 Score=46.01 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=95.5
Q ss_pred CChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCC--CHHHHHHHHHHH---HhhhcCCcCccchHHHHHHHHHH-
Q 000196 573 ADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDE--DFDVREYAISVA---GRLSEKNPAYVLPALRRHLIQLL- 646 (1874)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~--~~~VR~~a~~~l---~~l~~~~p~~v~p~l~~~l~~~l- 646 (1874)
.++.+|..++.-|.. +-...-..+.+++.++.++..+ +..+|..+++.+ .....+.+..+...++..+..-+
T Consensus 295 a~~~lq~kIL~~L~k--S~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~ 372 (501)
T PF13001_consen 295 ASPRLQEKILSLLSK--SVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGW 372 (501)
T ss_pred CCHHHHHHHHHHHHH--hHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCc
Confidence 356788888888852 1111111256788899999887 778999999999 77777776655555665554322
Q ss_pred HHHh------hCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc
Q 000196 647 TYLE------QSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG 720 (1874)
Q Consensus 647 ~~l~------~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g 720 (1874)
..+. .+..+...|..+=++||.+++..+..+..= -.++.-|...+.++ .++++.++-.|++.++....
T Consensus 373 p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~-----~~evr~sIqeALssl~~af~ 446 (501)
T PF13001_consen 373 PLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDE-----SPEVRVSIQEALSSLAPAFK 446 (501)
T ss_pred cccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCc-----chHHHHHHHHHHHHHHHHHh
Confidence 2221 111355678889999999999999887433 34556666666543 78888888899999887654
Q ss_pred c
Q 000196 721 F 721 (1874)
Q Consensus 721 ~ 721 (1874)
.
T Consensus 447 ~ 447 (501)
T PF13001_consen 447 D 447 (501)
T ss_pred c
Confidence 3
No 279
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=80.14 E-value=2.8e+02 Score=39.14 Aligned_cols=141 Identities=15% Similarity=0.031 Sum_probs=88.1
Q ss_pred cchhhhhhhccchhcccccccCCCCcHHHHHHHHHH--------HhhcCChHHHhHHHHHHhchhh---hhhc-HHHHHH
Q 000196 1299 RAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHI--------NNQLHQHEAAVGILTYAQKELD---VQLK-ESWYEK 1366 (1874)
Q Consensus 1299 ~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~i--------y~~L~~~D~~~Gi~~~~~~~~~---~~~~-~~~~E~ 1366 (1874)
+.|.+|.-+.|..+... ++.++..-.|..+ |.+.++.+.+-- .+....... ..+. ...|++
T Consensus 122 ~~~~kA~~~ye~l~~~~------P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 PVEVKSVTTVEELLAQQ------KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred ccChhHHHHHHHHHHhC------CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence 88999999988887644 3345666667776 888877776665 432222211 2333 557999
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHH-hhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhh
Q 000196 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAA-LARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQ 1445 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~-Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~ 1445 (1874)
+|+|++|+..|.+.....+... +....+-..+.+ +++ +.+....+.... .+ ..+....++.+-..|+-+.
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~---~~~~~L~~ay~q~l~~-~~a~al~~~~lk-~d----~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSA---AERRQWFDVLLAGQLD-DRLLALQSQGIF-TD----PQSRITYATALAYRGEKAR 265 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhhCH-HHHHHHhchhcc-cC----HHHHHHHHHHHHHCCCHHH
Confidence 9999999999998876544332 222223235555 577 666655322111 11 2233455677888999999
Q ss_pred HHHHHhhcCC
Q 000196 1446 MAEYVSRLDD 1455 (1874)
Q Consensus 1446 ~~~~~~~~~~ 1455 (1874)
..+.+..++.
T Consensus 266 A~~~L~~~~~ 275 (987)
T PRK09782 266 LQHYLIENKP 275 (987)
T ss_pred HHHHHHhCcc
Confidence 8888887754
No 280
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=80.11 E-value=47 Score=44.54 Aligned_cols=101 Identities=25% Similarity=0.232 Sum_probs=59.1
Q ss_pred hccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCC--CcHHHHHHHHHHHHhhccc
Q 000196 982 RTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVD--APVDIRRAAIETLTRLIPR 1059 (1874)
Q Consensus 982 ~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~--~~~~vr~~ai~~l~~l~~~ 1059 (1874)
..-...+++.+.+.+.......+.....-.|.++.++|- ..++|.+...+... .+..+|..|+.++.+++..
T Consensus 481 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 481 RCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred hhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 333444555555555432223344556667778877772 24677777777543 6789999999999987432
Q ss_pred ccccchhHhHHHHHHHHhCC--CCHHHHHHHHHHHH
Q 000196 1060 VQVTGHISSLVHHLKLVLDG--KNDELRKDAVDALC 1093 (1874)
Q Consensus 1060 ~~~~~~~~~ii~~l~~~l~~--~~~~l~~~al~~L~ 1093 (1874)
+...+...+.+++.+ .+.++|-+|+..|.
T Consensus 555 -----~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 555 -----CPEKVREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp ------HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 233444455555543 35789999987663
No 281
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=80.10 E-value=1.4e+02 Score=38.94 Aligned_cols=225 Identities=12% Similarity=0.134 Sum_probs=122.0
Q ss_pred hHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC------------------CCcchHH
Q 000196 88 GALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG------------------GAMTADE 149 (1874)
Q Consensus 88 ~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~------------------g~~~~~~ 149 (1874)
+++-||..|-++..-++.+ -..|..-|..++|.. +..| .-.+.|-.|...- |....+|
T Consensus 271 ~~~~aLrfLD~l~~kdn~q-Ks~Flk~Ls~~ip~f-p~rv--~~~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~ 346 (700)
T KOG2137|consen 271 PGLKALRFLDDLPQKDNSQ-KSSFLKGLSKLIPTF-PARV--LFQKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEF 346 (700)
T ss_pred chhhhhhhcccccccCcHH-HHHHHHHHHHhhccC-CHHH--HHHhhhhHHHHHhccccccccccchhhhhhhccchhhh
Confidence 3666666665554222333 355777788888742 2333 2234444443320 1112334
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHH---HHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKE---MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~---la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
.+..++.+...+.. ..-+.+-+.++.. |.+..|.- .....|+|.|..++.|.+..+++.+...+..+++.+-
T Consensus 347 ~~~~~p~l~pi~~~---~~~~~~~l~i~e~mdlL~~Kt~~e--~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD 421 (700)
T KOG2137|consen 347 GPKMLPALKPIYSA---SDPKQALLFILENMDLLKEKTPPE--EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID 421 (700)
T ss_pred hhhhhHHHHHHhcc---CCcccchhhHHhhHHHHHhhCChH--HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc
Confidence 44444444443332 1223444455543 44444442 3567899999999999999999999998887776543
Q ss_pred hcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhH
Q 000196 227 KRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLP 306 (1874)
Q Consensus 227 ~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~ 306 (1874)
.... =+.++|.+..-........++..++.|++.++.....+ ..-+....++...+.+++.+-...+.+..
T Consensus 422 --~~~v----k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~---~v~d~~lpi~~~~~~~dp~iv~~~~~i~~ 492 (700)
T KOG2137|consen 422 --VPFV----KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA---AVLDELLPILKCIKTRDPAIVMGFLRIYE 492 (700)
T ss_pred --HHHH----HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 1111 23456655543333334567888888999888532211 11122233444445677777777666666
Q ss_pred hHhhhChh--hHHHHHHHHHHHHHHHhhc
Q 000196 307 RIAHFLRD--RFVTNYLKICMNHILTVLR 333 (1874)
Q Consensus 307 ~la~~~~~--~f~~~yl~~~~~~Ll~~L~ 333 (1874)
.++...+. ++. .+.++|.+.....
T Consensus 493 ~l~~~~~~g~ev~---~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 493 ALALIIYSGVEVM---AENVLPLLIPLSV 518 (700)
T ss_pred HHHhhcccceeee---hhhhhhhhhhhhh
Confidence 65543332 332 2456666555543
No 282
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.49 E-value=21 Score=41.18 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=65.6
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccccc
Q 000196 1579 CRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAST 1658 (1874)
Q Consensus 1579 aRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~ 1658 (1874)
+-|+++|+.|...=.++..++|+ .+-...-+|-.+-..|+ ...|++-.+.-+.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~----------nAVyycNRAAAy~~Lg~---~~~AVkDce~Al~-------------- 143 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT----------NAVYYCNRAAAYSKLGE---YEDAVKDCESALS-------------- 143 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC----------cchHHHHHHHHHHHhcc---hHHHHHHHHHHHh--------------
Confidence 34677888888777777777764 12223334444444453 4567666554332
Q ss_pred ccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1659 SLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1659 ~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
...-..|.|.++|.-...+ ..+.+.+.+|++|++++|+|+-.|-.+-
T Consensus 144 --------iDp~yskay~RLG~A~~~~------gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 144 --------IDPHYSKAYGRLGLAYLAL------GKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred --------cChHHHHHHHHHHHHHHcc------CcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 1234788899999887654 4578899999999999999975554433
No 283
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.26 E-value=3.1e+02 Score=39.18 Aligned_cols=154 Identities=20% Similarity=0.195 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHhccC---CCCcc-hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcC
Q 000196 557 LIEELVEKLLIAAVADADVTVRHSIFSSLYG---NRGFD-DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA 632 (1874)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~~~f~-~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1874)
+..+++..+......+..+.+|.++++-+.. ...|. ..+...++-..++..++|...+||+.|.++|.-|.+..-.
T Consensus 1523 l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~ 1602 (1710)
T KOG1851|consen 1523 LQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF 1602 (1710)
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc
Confidence 3555665555433445568899988775531 11222 1122245667788899999999999999999998887755
Q ss_pred ccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHH
Q 000196 633 YVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1874)
Q Consensus 633 ~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1874)
...+.-++........ .+ .+......|...||+++-..|-.+.-+++..+..+-...++ ...+..++-.++
T Consensus 1603 ~~~~~k~d~~~~~~~s--~s-~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e------~~~i~~tvkktv 1673 (1710)
T KOG1851|consen 1603 QFVSDKRDTTSNILQS--KS-KDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARE------SAAIKQTVKKTV 1673 (1710)
T ss_pred ccchHhhhhhhhhhhh--cc-hHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCC------chHHHHHHHHHH
Confidence 5555333332222211 11 22233445778899999998877666777666666665554 344556666666
Q ss_pred HHHHHhc
Q 000196 713 GDLARVG 719 (1874)
Q Consensus 713 ~~La~~~ 719 (1874)
.+.-+..
T Consensus 1674 seFrrth 1680 (1710)
T KOG1851|consen 1674 SEFRRTH 1680 (1710)
T ss_pred HHHHHHh
Confidence 6655443
No 284
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=79.03 E-value=20 Score=42.37 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000196 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1874)
Q Consensus 1571 ~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~ 1650 (1874)
.|+++.+.+|+.+-...|.....++..... ....+..++|.+-|..++. ...|.+.++..++.+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~----------~~~~vy~~~A~~E~~~~~d--~~~A~~Ife~glk~f~~-- 68 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR----------CTYHVYVAYALMEYYCNKD--PKRARKIFERGLKKFPS-- 68 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------S-THHHHHHHHHHHHTCS---HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC----------CCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHCCC--
Confidence 699999999999999999999888874321 2468889999998986652 45699999988876542
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc---hHHHHHHHHHHH
Q 000196 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW---GKAWHSWALFNT 1723 (1874)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~---~k~w~~wA~~n~ 1723 (1874)
-....+.+.+++..++ +.+.+...|+.++..-+.. .+.|..|..|=.
T Consensus 69 --------------------~~~~~~~Y~~~l~~~~------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 69 --------------------DPDFWLEYLDFLIKLN------DINNARALFERAISSLPKEKQSKKIWKKFIEFES 118 (280)
T ss_dssp ---------------------HHHHHHHHHHHHHTT-------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHhC------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 1233555667776653 5788899999998665543 468999987743
No 285
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=78.91 E-value=27 Score=45.06 Aligned_cols=198 Identities=15% Similarity=0.130 Sum_probs=112.9
Q ss_pred hccHhhHHHHHHHhC--C---------CCHHHHHHHHHHHHhhhcCCcC-ccchHHHHHHHHHHHHHhhC-CCChHhHHH
Q 000196 595 LAQADCLSAIFAALN--D---------EDFDVREYAISVAGRLSEKNPA-YVLPALRRHLIQLLTYLEQS-SADNKCREE 661 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~--D---------~~~~VR~~a~~~l~~l~~~~p~-~v~p~l~~~l~~~l~~l~~~-~~~~~~r~~ 661 (1874)
+..++++..|+.... . -++.+|...+..|.+ ..-+ ...|...+++... .++ .+..+.|..
T Consensus 268 ~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~----l~~~~~~~klk~~ 340 (501)
T PF13001_consen 268 LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIAATSFPNILQIVFDG----LYSDNTNSKLKSL 340 (501)
T ss_pred CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHHHhCCccHHHHHhcc----ccCCccccccchh
Confidence 334566776665544 1 245667766666655 2111 1223333333222 233 124577777
Q ss_pred HHHHH---HHHHHhCc-cccccchHHHHHHHHHHhhccCC---CCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHH
Q 000196 662 SAKLL---GCLIRNCE-RLIRPYIAPIHKALVARLLEGTG---INANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734 (1874)
Q Consensus 662 a~~~L---~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~---~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l 734 (1874)
+...+ .....+++ ..+...-+.|...+.+.+.+... ...+...+..+..|||.|+...+..+..- -.++.-+
T Consensus 341 ~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~L 419 (501)
T PF13001_consen 341 ALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFL 419 (501)
T ss_pred cchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHH
Confidence 88888 77777765 34444455556666666631110 12356678888999999999887766343 3566667
Q ss_pred HHHHhcCcchhhHHHHHHHHHHHHhhcccccc-ccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 735 VEALLDGAAVTKREVAVSTLGQVVQSTGYVIT-PYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 735 ~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~-p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
.+.|.+ +..+.|.+.-.+|+.++......-. +.......+..++.....+....+|..|+|....+
T Consensus 420 F~sL~~-~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 420 FDSLED-ESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred HHHhhC-cchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 777754 4678998888888888876643211 11111123333333222344578999998887665
No 286
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.85 E-value=1.6e+02 Score=35.53 Aligned_cols=71 Identities=20% Similarity=0.337 Sum_probs=47.8
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCC---cchhHHHHHHHHHHHHhh
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDR---VEYRRFAAVLILKEMAEN 183 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~---~~~~r~aA~~~l~~la~~ 183 (1874)
|.++++ ++. .+|.-+...|+..+..|+..++......+...++..+.||.+.. +.+....|+.++..+...
T Consensus 107 ~~~fl~-ll~-~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 107 YSPFLK-LLD-RNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHHH-H-S--SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHH-Hhc-CCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 556666 665 56999999999999999998766665555677888888987422 223447778888888754
No 287
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.79 E-value=2.2e+02 Score=40.70 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=114.6
Q ss_pred cHHHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000196 22 SLDALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~ 100 (1874)
-++.+..|++.|..|+. .+.+|-.||...+.+. ..+.....++......-+++.+.+.+.|......+..|+...
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~l 114 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKL 114 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 34568899999988876 5667988888888443 222222234444444557888899999999999999997653
Q ss_pred cCcchhHHHHHHHHHHhhccc------CCChHHHHHHHHHHHHHhhhCCCcchHHHH----HHHHHHHhhh-cC------
Q 000196 101 LGENASKVSKFSNYMRTVFEV------KRDREILVLASKVLGHLARAGGAMTADEVE----FQVKMALDWL-RG------ 163 (1874)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~------~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~----~~~~~~~~~l-~~------ 163 (1874)
-.+.++||+.++|. ..+..|...|..++.-.-. .....+... .....+.+-+ ..
T Consensus 115 -------kk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~--~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slS 185 (1312)
T KOG0803|consen 115 -------KKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFA--EEKDRHVWFKCDPEIFYLVTEILVKETPDSLS 185 (1312)
T ss_pred -------HHHhhHHHHhhhhhhhheecccchHHHHHHHHHHHhhcC--hhhhHHHHHHhhHHHHHHHHHHHhccCccccc
Confidence 14667888888874 2344555555444432111 111222111 1122222221 00
Q ss_pred C----C---cc--hhH--HHHHHHHHHHHhh-cCc----cchhchHHHH--HHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 164 D----R---VE--YRR--FAAVLILKEMAEN-AST----VFNVHVAEFV--DAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 164 ~----~---~~--~~r--~aA~~~l~~la~~-~p~----~~~~~l~~il--~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
+ . .+ ..| ..++..+..+-.. .+. ...+-+..++ ..+|.-+.++.|.||.++.+.+..+.+.+
T Consensus 186 d~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i 265 (1312)
T KOG0803|consen 186 DLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDI 265 (1312)
T ss_pred hhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhh
Confidence 0 0 00 122 2355555554422 221 1234455555 55999999999999999999998888877
Q ss_pred hhc
Q 000196 226 EKR 228 (1874)
Q Consensus 226 ~~r 228 (1874)
..+
T Consensus 266 ~~~ 268 (1312)
T KOG0803|consen 266 LNR 268 (1312)
T ss_pred HHh
Confidence 766
No 288
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=78.57 E-value=64 Score=35.71 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=77.1
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHH-HHHHHHhhhCCCcchHHHHHHHHHHHhhhcC
Q 000196 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLAS-KVLGHLARAGGAMTADEVEFQVKMALDWLRG 163 (1874)
Q Consensus 85 ~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa-~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~ 163 (1874)
.|..+++++..+.... ........|..++. ..++-.+.+..+ .+++.+... .. ..+.+.+|..+
T Consensus 52 ~~~~~~lal~~~~~~~--~~~~~~~~~~~~i~----~~~~W~~~D~~~~~~~~~~~~~----~~-----~~~~~~~w~~s 116 (197)
T cd06561 52 IREAQYLALDLLDKKE--LKEEDLERFEPWIE----YIDNWDLVDSLCANLLGKLLYA----EP-----ELDLLEEWAKS 116 (197)
T ss_pred HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHc----CCchHHHHHHHHHHHHHHHHhc----Cc-----chHHHHHHHhC
Confidence 5777777777775421 11223344555554 233456666433 344444332 11 11567889988
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 164 DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 164 ~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
+..+.+|.|.+..+..+.. ..++..+++.+-..+.|++..||.|...+|+.+..
T Consensus 117 ~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~ 170 (197)
T cd06561 117 ENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGK 170 (197)
T ss_pred CcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 8888888887777665544 45788888888888999999999999999998764
No 289
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=78.28 E-value=13 Score=47.17 Aligned_cols=196 Identities=16% Similarity=0.140 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC-
Q 000196 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC- 1649 (1874)
Q Consensus 1571 ~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~- 1649 (1874)
...+..+.+=.-+.++.|.+++..+...+|-.- .-+--|.-.||+..+ .-++..|-+-+.+....
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv----------~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~~~s 420 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRV----------KGMEIYSTTLWHLQD----EVALSYLAQDLIDTDPNS 420 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----------cchhHHHHHHHHHHh----hHHHHHHHHHHHhhCCCC
Confidence 334566666666778888888777766544211 112236678888753 56777775433222211
Q ss_pred C----------ccccccc--cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH
Q 000196 1650 P----------VIQSAAS--TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS 1717 (1874)
Q Consensus 1650 ~----------~~~~~~~--~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~ 1717 (1874)
+ +.|.+.. ...+.-...-.+-.|=+|.++|.=... .+..+..+++|++|+..+|..|.|||.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~------~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA------TEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh------hHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 0 0010000 000000000011234445566654332 256788999999999999999999999
Q ss_pred HHHHHHHHHH--hhh---cc---CCCC------------chhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHH
Q 000196 1718 WALFNTAVMS--HYT---LR---GLPS------------VAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWF 1777 (1874)
Q Consensus 1718 wA~~n~~~~~--~~~---~~---~~~~------------~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf 1777 (1874)
++..+.+.=+ ..+ ++ -+|. .....-..|+.-|=+|+.+. .++++-. ..--.+.|
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~~-~~~~~il~ 568 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLCK-YHRASILF 568 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchhH-HHHHHHHH
Confidence 9877554211 000 00 0111 11223456777777777664 3444433 33344555
Q ss_pred hcCCcHHHHHHHHhc
Q 000196 1778 NHGATEEVQIALQKG 1792 (1874)
Q Consensus 1778 ~~g~~~~v~~~~~~~ 1792 (1874)
..+...+....+++-
T Consensus 569 ~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 569 SLGRYVEALQELEEL 583 (638)
T ss_pred hhcchHHHHHHHHHH
Confidence 556655555544443
No 290
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=78.08 E-value=13 Score=38.08 Aligned_cols=90 Identities=16% Similarity=-0.000 Sum_probs=51.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1874)
.++....+.+.|..|+.+++..... ++........+..+|..+|+++.+.-.+...... . + .-..+..|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455566667777777777655432 1233455666777777777777776665543211 0 0 01123346
Q ss_pred HHhcCHHHHHHHHHHHHhccC
Q 000196 1365 EKLQRWDDALKAYTNKASQAS 1385 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~ 1385 (1874)
.+.|+|++|+..|+..+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhcc
Confidence 677777777777777665443
No 291
>PRK12370 invasion protein regulator; Provisional
Probab=78.08 E-value=2.4e+02 Score=37.20 Aligned_cols=205 Identities=11% Similarity=0.018 Sum_probs=123.0
Q ss_pred hcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccccccccc
Q 000196 1581 KSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSL 1660 (1874)
Q Consensus 1581 k~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~ 1660 (1874)
..|.+..|...+.++...+|+ .+......+.+++.+|+ ..+|+..+++.+.-..
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~Al~l~P------------- 369 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHN----------NPQALGLLGLINTIHSE---YIVGSLLFKQANLLSP------------- 369 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCC-------------
Confidence 345688999999999888763 46677777888888885 6789999988764211
Q ss_pred ccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhh
Q 000196 1661 TTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQ 1740 (1874)
Q Consensus 1661 ~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~ 1740 (1874)
..+.++..+|.-.... ...++.+..|.+|++++|....+++..+..... ..+
T Consensus 370 ---------~~~~a~~~lg~~l~~~------G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~-------------~g~ 421 (553)
T PRK12370 370 ---------ISADIKYYYGWNLFMA------GQLEEALQTINECLKLDPTRAAAGITKLWITYY-------------HTG 421 (553)
T ss_pred ---------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-------------ccC
Confidence 1133445555544433 346889999999999999876655443332111 012
Q ss_pred HHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHH-HhcCCcHHHHHHHHhcccCCChhhH--HHHHHHHHHhccCCCh
Q 000196 1741 FVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLW-FNHGATEEVQIALQKGFAHVNINTW--LVVLPQIIARIHSNNR 1817 (1874)
Q Consensus 1741 ~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLw-f~~g~~~~v~~~~~~~~~~ip~~~w--l~~ipQLiari~~~~~ 1817 (1874)
| ..|+..|-+++... +.+. .....++... ...|..++....+.+.... ++.-+ ...+-....+.+ .
T Consensus 422 ~-eeA~~~~~~~l~~~-----~p~~-~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g---~ 490 (553)
T PRK12370 422 I-DDAIRLGDELRSQH-----LQDN-PILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS---E 490 (553)
T ss_pred H-HHHHHHHHHHHHhc-----cccC-HHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH---H
Confidence 3 56777777776542 1111 1222333333 3567777777766664433 32222 233333333443 3
Q ss_pred hHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCc
Q 000196 1818 AVRELIQSLLVRIGQSHPQALMYPLLVACKSIS 1850 (1874)
Q Consensus 1818 ~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~~ 1850 (1874)
.....+..++......+=+.-..|++.+..++.
T Consensus 491 ~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~ 523 (553)
T PRK12370 491 RALPTIREFLESEQRIDNNPGLLPLVLVAHGEA 523 (553)
T ss_pred HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhh
Confidence 556778888887777765555577777766643
No 292
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.05 E-value=23 Score=33.68 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=62.3
Q ss_pred HHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccc
Q 000196 643 IQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFG 722 (1874)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~ 722 (1874)
.+.+..+.+ +.+-.|..+...|..+++... ......+.++..++..++++ ++-|--+++.++..|+...+.
T Consensus 6 ~~al~~L~d--p~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-----DsyVYL~aI~~L~~La~~~p~- 76 (92)
T PF10363_consen 6 QEALSDLND--PLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-----DSYVYLNAIKGLAALADRHPD- 76 (92)
T ss_pred HHHHHHccC--CCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHChH-
Confidence 344555543 456689999999999998765 33445788999999999986 677888899999999886543
Q ss_pred hhhcHHhHHHHHHHHHhcC
Q 000196 723 MRQYISELMPLIVEALLDG 741 (1874)
Q Consensus 723 ~~~~~~~llp~l~~~l~d~ 741 (1874)
.++|.+++...|.
T Consensus 77 ------~vl~~L~~~y~~~ 89 (92)
T PF10363_consen 77 ------EVLPILLDEYADP 89 (92)
T ss_pred ------HHHHHHHHHHhCc
Confidence 4677777776654
No 293
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=77.52 E-value=37 Score=33.57 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.+...+....+.|+++.|...+.++....|... ..+...+..+..+...|+ ..+|+..++.++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST-------YAPNAHYWLGEAYYAQGK---YADAAKAFLAVVKKYPK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-------ccHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHCCC
Confidence 36788889999999999999999998876544210 125667888999999885 67899999988754211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1874)
. .....++..+|...... ...++..+.|..+++..|+...
T Consensus 72 ~-------------------~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 72 S-------------------PKAPDALLKLGMSLQEL------GDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred C-------------------CcccHHHHHHHHHHHHh------CChHHHHHHHHHHHHHCcCChh
Confidence 0 11123344444444333 2457788899999988887643
No 294
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=77.44 E-value=1.2e+02 Score=38.07 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=98.0
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCcch
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTA 147 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~lg~l~~~~g~~~~ 147 (1874)
++.|.+.+-+++...|..|+..|.. +. +...++.+|..++..-... .+|.+......+....|...+.-...
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T----Ds-GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~le 283 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET----DS-GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLE 283 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc----Cc-cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchh
Confidence 4445566666777778877665532 21 2344555666655554432 25677777777777777776655566
Q ss_pred HHHHHHHHHHHhhhc---------CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCc--hhHHHHHHH
Q 000196 148 DEVEFQVKMALDWLR---------GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT--LAVRERAVE 216 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~---------~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~--~~VR~aA~~ 216 (1874)
.|+..+++.++..+- .++.|..|--|..++..++.+-++.-..--+.|+..+.+++.|+. ..-...|..
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 688888888877762 356788898888888999988777655545556666778888884 455677777
Q ss_pred HHHHHHH
Q 000196 217 ALRACLR 223 (1874)
Q Consensus 217 al~~~~~ 223 (1874)
.|..+..
T Consensus 364 gL~~lg~ 370 (576)
T KOG2549|consen 364 GLSELGH 370 (576)
T ss_pred HHHHhhh
Confidence 6665543
No 295
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=76.51 E-value=2.4e+02 Score=36.40 Aligned_cols=164 Identities=13% Similarity=0.119 Sum_probs=102.0
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHhhh-----CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cC-c
Q 000196 114 YMRTVFEVKRDREILVLASKVLGHLARA-----GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-AS-T 186 (1874)
Q Consensus 114 ~L~~~l~~~~d~~v~~~aa~~lg~l~~~-----~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~-~p-~ 186 (1874)
-+..+++...|.+++.+|+.++-.++.+ .|-...+..+++++-. .++.....-+++-++.-+.-. +| +
T Consensus 380 ~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-----~dp~~~i~~~~lgai~NlVmefs~~k 454 (678)
T KOG1293|consen 380 SHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-----MDPEIMIMGITLGAICNLVMEFSNLK 454 (678)
T ss_pred HHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-----hCcchhHHHHHHHHHHHHHhhcccHH
Confidence 3444555567899999999988776553 3444556666666544 233333444444444444432 22 1
Q ss_pred -cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000196 187 -VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVG 265 (1874)
Q Consensus 187 -~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~ 265 (1874)
.|.. ...++.+...+.|+++.+|..+.++|+..+=. .+...+.+.+.++....+..+-++.+|.+.++++.+|+
T Consensus 455 skfl~--~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~---~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 455 SKFLR--NNGIDILESMLTDPDFNSRANSLWVLRHLMFN---CDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred HHHHH--cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhc---chHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 1221 24667778888999999999999999986521 11224455667776665555544447999999999998
Q ss_pred HHHHcch---hhhHHHHHHHHHHHH
Q 000196 266 ELLRNTG---EFMMSRYREVAEIVL 287 (1874)
Q Consensus 266 ~ll~~~~---~~~~~~~~~i~~~ll 287 (1874)
-+.-.+- +|+.+.++.+...+.
T Consensus 530 Nl~c~~~~svdfll~~~~~~ld~i~ 554 (678)
T KOG1293|consen 530 NLTCNSRKSVDFLLEKFKDVLDKID 554 (678)
T ss_pred HhhcCcHHHHHHHHHhhhHHHHHHH
Confidence 8876432 566666665554443
No 296
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.28 E-value=41 Score=34.99 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
+.+.+++...-...++|+..-..+++.++.... ...+.++.|-.-++..++.|...|+.+|..++++++..+...
T Consensus 5 ~~~~I~kATs~~l~~~dw~~ileicD~In~~~~-----~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 5 FDELIEKATSELLGEPDLASILEICDMIRSKDV-----QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred HHHHHHHHcCcccCccCHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 344444443334457888888888888863211 234678889888999999999999999999999997654322
Q ss_pred H--HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 638 L--RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 638 l--~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
+ ++++..+..-+... .+++.++..+.++..-+...+
T Consensus 80 vas~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 80 VASREFMDELKDLIKTT-KNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HhhHHHHHHHHHHHccc-CCHHHHHHHHHHHHHHHHHhC
Confidence 2 33443333333333 567888888888887776654
No 297
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.21 E-value=1.9e+02 Score=35.56 Aligned_cols=255 Identities=18% Similarity=0.297 Sum_probs=140.3
Q ss_pred hhHHHHHHHHHHhHhhhh----HHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHH--------
Q 000196 1493 ESYERAYSNMVRVQQLSE----LEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRA-------- 1560 (1874)
Q Consensus 1493 esy~ray~~l~~lq~L~E----leEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~-------- 1560 (1874)
.-++||...|=++-+|.- +||++.-. .. ...+.+.|.+ .+++...|+..+..-.
T Consensus 128 Nv~dRAvt~lPRVdqlWyKY~ymEE~LgNi---------~g-aRqiferW~~----w~P~eqaW~sfI~fElRykeiera 193 (677)
T KOG1915|consen 128 NVWDRAVTILPRVDQLWYKYIYMEEMLGNI---------AG-ARQIFERWME----WEPDEQAWLSFIKFELRYKEIERA 193 (677)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhccc---------HH-HHHHHHHHHc----CCCcHHHHHHHHHHHHHhhHHHHH
Confidence 446677777766666543 67765311 11 2236677753 5677888887754321
Q ss_pred -hhcC----CcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHH
Q 000196 1561 -LVLP----PTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEA 1635 (1874)
Q Consensus 1561 -~vl~----~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~A 1635 (1874)
.+.+ -+.++.+|||+|+.--|+|+...|.+.-.++...-.+ +. ..-.+..++|++-=.+.+ .+.|
T Consensus 194 R~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~---d~----~~e~lfvaFA~fEe~qkE---~ERa 263 (677)
T KOG1915|consen 194 RSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD---DE----EAEILFVAFAEFEERQKE---YERA 263 (677)
T ss_pred HHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh---HH----HHHHHHHHHHHHHHHHHH---HHHH
Confidence 1111 2356899999999999999999998887766543211 00 124566777776533332 2333
Q ss_pred HHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHH-----HHHHHHhhccc
Q 000196 1636 FARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIA-----AYRNATQCATK 1710 (1874)
Q Consensus 1636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~-----~y~~a~~~~~~ 1710 (1874)
--+.+--+..+... .... .|-.+..+--+.. +.+.+++++- .|..-+.-+|-
T Consensus 264 r~iykyAld~~pk~-----------------raee---L~k~~~~fEKqfG---d~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 264 RFIYKYALDHIPKG-----------------RAEE---LYKKYTAFEKQFG---DKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHhcCcc-----------------cHHH---HHHHHHHHHHHhc---chhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 33333333333210 1111 1222233322221 2355666552 57888899999
Q ss_pred chHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHH----
Q 000196 1711 WGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQ---- 1786 (1874)
Q Consensus 1711 ~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~---- 1786 (1874)
+|.+|+-+-.. .+ +.+++ ...-+-|=++|+-.+ +-.--..--|-+-||.+|.-.+++.
T Consensus 321 nYDsWfdylrL----~e---~~g~~-------~~Ire~yErAIanvp----p~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 321 NYDSWFDYLRL----EE---SVGDK-------DRIRETYERAIANVP----PASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred CchHHHHHHHH----HH---hcCCH-------HHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 99999865432 22 11222 234456777776432 1111123568999999997666542
Q ss_pred ----HHHHhcccCCChh------hHHHHHHHHHHhc
Q 000196 1787 ----IALQKGFAHVNIN------TWLVVLPQIIARI 1812 (1874)
Q Consensus 1787 ----~~~~~~~~~ip~~------~wl~~ipQLiari 1812 (1874)
+..+.++.-||.. .||..---.|-++
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~ 418 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQL 418 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHc
Confidence 3456778888854 4555444444444
No 298
>PRK11189 lipoprotein NlpI; Provisional
Probab=75.55 E-value=1.8e+02 Score=34.62 Aligned_cols=164 Identities=14% Similarity=0.097 Sum_probs=100.5
Q ss_pred ChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccc
Q 000196 1584 RISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTA 1663 (1874)
Q Consensus 1584 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~ 1663 (1874)
..+.+...+.+++...+ .++ ...+...++.+...+..|+ ..+|+..+++.+..- +
T Consensus 41 ~~e~~i~~~~~~l~~~~-~~~-----~~~a~~~~~~g~~~~~~g~---~~~A~~~~~~Al~l~---P------------- 95 (296)
T PRK11189 41 QQEVILARLNQILASRD-LTD-----EERAQLHYERGVLYDSLGL---RALARNDFSQALALR---P------------- 95 (296)
T ss_pred HHHHHHHHHHHHHcccc-CCc-----HhhHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHcC---C-------------
Confidence 44555555555554222 111 1246778888999999995 678988887755421 0
Q ss_pred cCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHH
Q 000196 1664 TSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVV 1743 (1874)
Q Consensus 1664 ~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~ 1743 (1874)
-.+..+..+|...... ...++....|.+|++++|++..+|...|...... .-..
T Consensus 96 ------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~--------------g~~~ 149 (296)
T PRK11189 96 ------DMADAYNYLGIYLTQA------GNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG--------------GRYE 149 (296)
T ss_pred ------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------CCHH
Confidence 1244566666665543 3568889999999999999999998888664421 1234
Q ss_pred HHHHHHHHHHhhccccCCCcchHHhHHHHHHHH--HhcCCcHHHHHHHHhcccCCChhhHHHHHHH
Q 000196 1744 HAVTGYFHSIACAAHAKGVDDSLQDILRLLTLW--FNHGATEEVQIALQKGFAHVNINTWLVVLPQ 1807 (1874)
Q Consensus 1744 ~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLw--f~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQ 1807 (1874)
.|++.|-+++... +++.. |.+.+. ...++.++....+.+.....+...|...+.+
T Consensus 150 eA~~~~~~al~~~-----P~~~~----~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~ 206 (296)
T PRK11189 150 LAQDDLLAFYQDD-----PNDPY----RALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVE 206 (296)
T ss_pred HHHHHHHHHHHhC-----CCCHH----HHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHH
Confidence 7888888888774 33332 333222 1234445666666666655666667644333
No 299
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=75.48 E-value=26 Score=32.16 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1571 ~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
.|...+......|+++.|...+.++....+. .+.+.+..+.+++..|+ ..+|++.++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD----------NADAYYNLAAAYYKLGK---YEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 5778889999999999999999988766442 24677788888888874 5789888887654
No 300
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=74.56 E-value=25 Score=35.47 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=71.7
Q ss_pred hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccccccc-hhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000196 1023 DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVTG-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101 (1874)
Q Consensus 1023 ~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~ 1101 (1874)
++++..++|.+.+.+......+.|-++.-.++.++....+.+ .+..++..+.......+. .+.++.+|..++++.+.
T Consensus 1 E~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~ 78 (121)
T PF12397_consen 1 EDILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQEN 78 (121)
T ss_pred CcHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcccc
Confidence 356778899999999855567999999999999999887766 566777666555543222 57899999988866522
Q ss_pred ccccchhhHHHHHHhCCCCchhHHHHHHHHh
Q 000196 1102 DFTIFIPSIHKLLLKHRLRHKEFEEIEGRLR 1132 (1874)
Q Consensus 1102 ~f~~~ip~i~~~l~~~~~~~~~~~~~~~~~~ 1132 (1874)
...+=..+.+.+.+. +.+...+..+.
T Consensus 79 -~~~lp~~~~~~l~~~----~~l~~~L~~l~ 104 (121)
T PF12397_consen 79 -VDSLPRKVFKALLKL----PDLIELLSELS 104 (121)
T ss_pred -cccCCHHHHHHHHcC----ccHHHHHHHHH
Confidence 334455666666653 44555555553
No 301
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=74.55 E-value=76 Score=42.52 Aligned_cols=116 Identities=12% Similarity=0.021 Sum_probs=84.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++.+...-++.+....|+++.|...+..+..+.|. +....+.++..|-..+ +-++|+...+..+..-
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd----------~~~a~~~~a~~L~~~~---~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD----------SSEAFILMLRGVKRQQ---GIEAGRAEIELYFSGG 150 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC----------cHHHHHHHHHHHHHhc---cHHHHHHHHHHHhhcC
Confidence 44788888899999999999999999998888763 4567788888888777 4678888877765421
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
. ..+..+..+|.-+.++ ...++....|.++..-+|+..++|..||....
T Consensus 151 p----------------------~~~~~~~~~a~~l~~~------g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 151 S----------------------SSAREILLEAKSWDEI------GQSEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred C----------------------CCHHHHHHHHHHHHHh------cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1 1233344444444444 23577888999998888888999999987644
No 302
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=74.12 E-value=15 Score=36.42 Aligned_cols=92 Identities=8% Similarity=0.029 Sum_probs=55.9
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCC-ChHHHHhHHHHHHHHHHHc
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPA-EPAARLEMAPMAANAAWNM 1440 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~-~~~~~~~~~~~~a~aaw~l 1440 (1874)
..+.+.|+|++|...|+..+...++.....+....+-+|+.+.|+|+.-....+..-... +...........+.+..++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 89 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL 89 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh
Confidence 346778899999999988876544321112345668888999999876666555432110 1001112233555677778
Q ss_pred CChhhHHHHHhhc
Q 000196 1441 GEWDQMAEYVSRL 1453 (1874)
Q Consensus 1441 ~~Wd~~~~~~~~~ 1453 (1874)
|+++....+....
T Consensus 90 ~~~~~A~~~~~~~ 102 (119)
T TIGR02795 90 GDKEKAKATLQQV 102 (119)
T ss_pred CChHHHHHHHHHH
Confidence 8888877666543
No 303
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.96 E-value=40 Score=40.59 Aligned_cols=132 Identities=19% Similarity=0.206 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh-Ccccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN-CERLIRP 679 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~-~~~~~~p 679 (1874)
+.-|...+.--+..||..|..-+.++...+|..+...+... .+.+.++-.+ .+...|.....++..++.. ++..+.|
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~l-l~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYAL-LQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHH-HHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 44444556677889999999999999998887765555543 3444444444 5667788888888887754 5555788
Q ss_pred chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHh
Q 000196 680 YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL 739 (1874)
Q Consensus 680 y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~ 739 (1874)
++.-++..+...+... .+.++.-++..+..++...++.+..+...+++.+...+.
T Consensus 138 ~~~l~~~yi~~AMThi-----t~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-----TPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred hHHHHHHHHHHHHhhc-----cHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 8888888887777764 677888888899999998888887777777777777664
No 304
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.95 E-value=38 Score=40.85 Aligned_cols=180 Identities=16% Similarity=0.177 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHhhhcCCcCccchHHHH--------HHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchH
Q 000196 611 EDFDVREYAISVAGRLSEKNPAYVLPALRR--------HLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA 682 (1874)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~--------~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~ 682 (1874)
.+.++.+.++.+++++....|.. .+.+.. ....++..+ .. +|.-....|+.++..++...+........
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~-~~~~~~~~~~~~~~~~~~fl~ll-~~-~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~ 145 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSR-VELFLELAKQDDSDPYSPFLKLL-DR-NDSFIQLKAAFILTSLLSQGPKRSEKLVK 145 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSS-HHHHHHHHH-TTH--HHHHHHH--S--SSHHHHHHHHHHHHHHHTSTTT--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCHHH-HHHHHHhcccccchhHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHcCCccccchHH
Confidence 45677777888888888877743 222222 223344433 33 57788899999999999887655554445
Q ss_pred HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHh------cCcchhhHHHHHHHH
Q 000196 683 PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALL------DGAAVTKREVAVSTL 754 (1874)
Q Consensus 683 ~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~------d~~~~~~r~~A~~~L 754 (1874)
.+++.++..+++... ..+.++...++.+++.|...-. .+..+ ...++.+.+.+. ........=.++.++
T Consensus 146 ~~l~~ll~~L~~~l~-~~~~~~~~~av~~L~~LL~~~~--~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~l 222 (312)
T PF03224_consen 146 EALPKLLQWLSSQLS-SSDSELQYIAVQCLQNLLRSKE--YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCL 222 (312)
T ss_dssp HHHHHHHHHHH-TT--HHHH---HHHHHHHHHHHTSHH--HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-CCCcchHHHHHHHHHHHhCcch--hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHH
Confidence 666777776665210 1134455667788888775422 22211 455666666662 111112222334444
Q ss_pred HHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000196 755 GQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1874)
Q Consensus 755 g~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~l 798 (1874)
-.+.-. +..+.-... ..+++.|..+++....++|-|-++.++
T Consensus 223 WlLSF~-~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~l 264 (312)
T PF03224_consen 223 WLLSFE-PEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAIL 264 (312)
T ss_dssp HHHTTS-HHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred HHHhcC-HHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHHH
Confidence 433221 111111111 127888888887654445544444443
No 305
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=73.63 E-value=1.1e+02 Score=36.14 Aligned_cols=192 Identities=13% Similarity=0.042 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.+-+-++.-|..|+++.|-.+..++......... ....--.++.+-.++.+++ ..+|+..+++.+.-...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~-----~~~Aa~~~~~Aa~~~k~~~---~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD-----KFEAAKAYEEAANCYKKGD---PDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHh
Confidence 667778888888888888888877765432111000 0012233455555566663 57899888876653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
......-|+++..+|+...+. ...+++.+++|++|.++....... +.-+.+.-++...
T Consensus 107 ----------------~G~~~~aA~~~~~lA~~ye~~-----~~d~e~Ai~~Y~~A~~~y~~e~~~-~~a~~~~~~~A~l 164 (282)
T PF14938_consen 107 ----------------AGRFSQAAKCLKELAEIYEEQ-----LGDYEKAIEYYQKAAELYEQEGSP-HSAAECLLKAADL 164 (282)
T ss_dssp ----------------CT-HHHHHHHHHHHHHHHCCT-----T--HHHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHH
T ss_pred ----------------cCcHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHHHHHH
Confidence 234566799999999987543 146899999999999887655422 2222222222222
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchH-HhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSL-QDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~-q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
+... . -...|++.|-+.+...-.....++.. +..++.+-+++-.|+.....+.+.++...-|
T Consensus 165 ~~~l------~-~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 165 YARL------G-RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHT------T--HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHh------C-CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2111 1 23577888877665321111123333 3467777788888887777777877765554
No 306
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=73.57 E-value=93 Score=40.48 Aligned_cols=200 Identities=17% Similarity=0.138 Sum_probs=114.8
Q ss_pred CCCCcHHHHHHHHHHHcCCCCchh-hHH----HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhc-CCChhhhh-hHH
Q 000196 18 AGGGSLDALNRILADLCTHGNPKE-GAS----LALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLE-SNDAAENL-GAL 90 (1874)
Q Consensus 18 ~~~~~~~~~~~~~~~L~s~~~~~~-~aa----~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~-s~~~~~r~-~~i 90 (1874)
..++...+.+-+|++||......+ ... ....+.....+..+|...|....+.+..-+.++.+ +++...+. .-+
T Consensus 29 ~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~rF~sVsdRF~~eL~~~~~~~~~~~~~~~~li 108 (552)
T PF14222_consen 29 TEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEIRFVSVSDRFIAELEKLRKDSNDAESKIELLI 108 (552)
T ss_pred CHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHhcccCCchHHHHHHHH
Confidence 355666778888999987643110 011 12334444455666666664433333333333343 23222222 122
Q ss_pred HHHhHh-hccccCcchhHHHHHHHHHHhhcccC-CChHHHHHHHHHHHHHhhh-C--------CCcchHHHHHHHHHHHh
Q 000196 91 RAIDEL-IDVALGENASKVSKFSNYMRTVFEVK-RDREILVLASKVLGHLARA-G--------GAMTADEVEFQVKMALD 159 (1874)
Q Consensus 91 ~ai~~l-i~~~~~~~~~~~~~~~~~L~~~l~~~-~d~~v~~~aa~~lg~l~~~-~--------g~~~~~~v~~~~~~~~~ 159 (1874)
.|+..| +...+.+..+....|..-+-..|... .+.++..+-|+++..|..+ . ...|.++|+...+++.+
T Consensus 109 ~GMr~lrlk~~p~e~~e~s~~Fm~~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~ 188 (552)
T PF14222_consen 109 MGMRYLRLKMYPEEAFEESAEFMQSLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAK 188 (552)
T ss_pred hhcceeeecCCCHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH
Confidence 333333 33332233333344555555555434 4667888999999888654 1 12367788889999999
Q ss_pred hhcCCCcchhHHHHHHHH-HHHHhhcCccchhchH-HHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 160 WLRGDRVEYRRFAAVLIL-KEMAENASTVFNVHVA-EFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 160 ~l~~~~~~~~r~aA~~~l-~~la~~~p~~~~~~l~-~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
|....+.|.. |.-+. ..|+-+.++.|..+-. ++++.+..-++|+ ..|..+.+++..++
T Consensus 189 ~~~K~khw~~---afPL~t~lLCvS~~e~F~~~W~~~~i~~~~~klKdk--~~r~~~l~~l~RLl 248 (552)
T PF14222_consen 189 MMSKPKHWNV---AFPLVTTLLCVSPKEFFLSNWLPSLIESLISKLKDK--ETRPVALECLSRLL 248 (552)
T ss_pred HHhCcchhhh---HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhhcCCh--hhhHHHHHHHHHHH
Confidence 9865444322 33332 3355555667888778 6999999999999 67788888887665
No 307
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=73.36 E-value=2.1e+02 Score=34.35 Aligned_cols=213 Identities=13% Similarity=0.083 Sum_probs=109.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHc---CCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhh
Q 000196 12 GPPAPGAGGGSLDALNRILADLC---THGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENL 87 (1874)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~L~---s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~ 87 (1874)
++-..+..+--.++....++.+- .++. +++.+ |+.+-.....++-+++...-.-.+.+.+..+++.+..++..
T Consensus 45 ~~~il~~s~~~~dl~~~~~d~lde~~dk~AktR~~~---le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~ 121 (427)
T KOG2842|consen 45 GSGILDESGTQEDLEEKLKDDLDEVKDKSAKTRQEA---LEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQL 121 (427)
T ss_pred chhhhcccccHHHHHHHHHHHHHHHHhcchhHHHHH---HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHH
Confidence 44444555666777778777763 3332 33333 33333333334445554444445667777888999988887
Q ss_pred hHHHHHhHhhcccc-Cc-chhHHHHHHHHHHhhccc-CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhh---
Q 000196 88 GALRAIDELIDVAL-GE-NASKVSKFSNYMRTVFEV-KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWL--- 161 (1874)
Q Consensus 88 ~~i~ai~~li~~~~-~~-~~~~~~~~~~~L~~~l~~-~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l--- 161 (1874)
++-..+.++.--.+ +. ......-..+++..++.. +..+..+..++-++|--....-.-..++..+++-.-..|.
T Consensus 122 ~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~ 201 (427)
T KOG2842|consen 122 LAAALIGLLCVQAGPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVY 201 (427)
T ss_pred HHHHHHHHHHHhccCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 76666665532211 11 111122222333333321 1223444444444442221110112222222222222222
Q ss_pred --cCC-------CcchhHHHHHHHHHHHHhhcCccchhchHH-HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh
Q 000196 162 --RGD-------RVEYRRFAAVLILKEMAENASTVFNVHVAE-FVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1874)
Q Consensus 162 --~~~-------~~~~~r~aA~~~l~~la~~~p~~~~~~l~~-il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1874)
.++ ........|+.++..+..-||.....++.. .+|.|-..|.-....+|.+|.+++.-+.++...
T Consensus 202 ~~~~~~~~~~~~~~~~l~~~~~~~~a~~Lti~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~ 277 (427)
T KOG2842|consen 202 LEDDETVVVCACQNLGLLLTCLTAWSLLLTICPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQD 277 (427)
T ss_pred cccCCCccccccchhHHHHHHHHHHHHHHHcCccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhc
Confidence 111 233455566777777777787655555444 557777888877888899998888877666543
No 308
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=73.35 E-value=2.9e+02 Score=42.38 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCc-----hhHHhHhhHhHHH
Q 000196 1327 VVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPH-----IVLEATLGRMRCL 1401 (1874)
Q Consensus 1327 ~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~-----~~~~~~~g~m~cl 1401 (1874)
..+...++|.+|.+.|...|.++.. .+..+..+..+++.|.|..++..|+.......+.. ...-...+++.|.
T Consensus 1125 ~~~~~~~~~~~L~~~~~~~~~~~~r--~~~~~~~~~~~~~~~~~~~~q~~~e~~~~k~~~~~~~~s~~~~~~~~~~~~~a 1202 (2105)
T COG5032 1125 DALGKLELYSSLAEIDMFLSLHRRR--KLLETLVATAYEQVGEWYKAQQLYEVAQRKARSKEFPFSLQYLYWHINDIDCA 1202 (2105)
T ss_pred hHHHHHHHHHHHHHHhhhhccCcch--hhhhHHHHHHHHHHHhHHHHHHHHHHHhhhcccccCchhhHHHHHcccchhhH
Confidence 4456678899999999999988754 45556677779999999999999998764332211 1122345666666
Q ss_pred HHhhC
Q 000196 1402 AALAR 1406 (1874)
Q Consensus 1402 ~~Lg~ 1406 (1874)
..+-+
T Consensus 1203 ~~~~~ 1207 (2105)
T COG5032 1203 DKLQS 1207 (2105)
T ss_pred hhhhh
Confidence 65554
No 309
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=73.16 E-value=38 Score=35.33 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=68.6
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHHHHHH
Q 000196 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTY 648 (1874)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~ 648 (1874)
.++|+.+-..+++.++.. .-. ..+.++.|..-++..++.|...|+.+|..++++++..+...+ ++++..+..-
T Consensus 14 ~~~dw~~il~icD~I~~~-~~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl 88 (144)
T cd03568 14 TSENWGLILDVCDKVKSD-ENG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKL 88 (144)
T ss_pred CCcCHHHHHHHHHHHhcC-Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHH
Confidence 457777777888877632 111 246788888888999999999999999999999987654322 3344443333
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
+... .+...++..+.++..-+...+
T Consensus 89 ~~~~-~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 89 INDR-VHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred hccc-CCHHHHHHHHHHHHHHHHHhC
Confidence 3333 567778888888888777654
No 310
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=73.15 E-value=94 Score=38.23 Aligned_cols=228 Identities=18% Similarity=0.145 Sum_probs=117.0
Q ss_pred HHHHHh-hhcCCChhhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHhhcccCCC-hHHHHHHHHHHHHHhhhCCCcc
Q 000196 71 YDRISG-LLESNDAAENLGALRAIDELIDVALGENASKVSK--FSNYMRTVFEVKRD-REILVLASKVLGHLARAGGAMT 146 (1874)
Q Consensus 71 ~~~i~~-l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~--~~~~L~~~l~~~~d-~~v~~~aa~~lg~l~~~~g~~~ 146 (1874)
...+.. +++++ ...|.+|.-.+.-++.-. .....+.+ ..-|+-..+...+. ..=+..|-+-.-++....+.
T Consensus 27 ~~~i~~~lL~~~-~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-- 101 (371)
T PF14664_consen 27 GERIQCMLLSDS-KEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-- 101 (371)
T ss_pred HHHHHHHHCCCc-HHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC--
Confidence 334443 44444 778999999888887543 11111211 22355566643222 23366777777777776221
Q ss_pred hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 147 ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 147 ~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
++.++.-+-+++=-+-++.+++.|.+++..+.+++-..|..+... .=+..++.++.|+...+-+.. +..++..+.
T Consensus 102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~--gG~~~L~~~l~d~~~~~~~~l---~~~lL~lLd 176 (371)
T PF14664_consen 102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAEC--GGIRVLLRALIDGSFSISESL---LDTLLYLLD 176 (371)
T ss_pred cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHc--CCHHHHHHHHHhccHhHHHHH---HHHHHHHhC
Confidence 111222233333333345667899999999999999999865421 222445566666554443333 334444443
Q ss_pred hcchh--hHH-HHHHHHHHHHHhh-c-cCCCCh--hHHHHHHHHHHHHHHcc-h--hhhHHHHHHHHHHHHHHhhcchhH
Q 000196 227 KRETR--WRV-QWYYRMFEATQDG-L-GRNAPV--HSIHGSLLAVGELLRNT-G--EFMMSRYREVAEIVLRYLEHRDRL 296 (1874)
Q Consensus 227 ~r~~~--~~~-~~~~~i~~~~~~~-l-~~~~~~--~~~~~al~~l~~ll~~~-~--~~~~~~~~~i~~~ll~~~~~~~~~ 296 (1874)
....+ .+. .-+..++....+- . ...++. +...++..++..+++.= | -+..+.+ .-+..++..+..+++.
T Consensus 177 ~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ 255 (371)
T PF14664_consen 177 SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPE 255 (371)
T ss_pred CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHH
Confidence 22211 011 0112222211111 0 111112 35567777887777732 2 1111222 2345566667778888
Q ss_pred HHHHHHHHhHhHh
Q 000196 297 VRLSITSLLPRIA 309 (1874)
Q Consensus 297 vr~~~~~~i~~la 309 (1874)
+|+.+++++=.+-
T Consensus 256 ir~~Ildll~dll 268 (371)
T PF14664_consen 256 IRKAILDLLFDLL 268 (371)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665543
No 311
>PRK11189 lipoprotein NlpI; Provisional
Probab=72.81 E-value=1.6e+02 Score=35.15 Aligned_cols=124 Identities=12% Similarity=0.011 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1632 ~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
.+.++..+..++.... .++...++.|..+|.-.... ...++....|.+|++++|+.
T Consensus 42 ~e~~i~~~~~~l~~~~------------------~~~~~~a~~~~~~g~~~~~~------g~~~~A~~~~~~Al~l~P~~ 97 (296)
T PRK11189 42 QEVILARLNQILASRD------------------LTDEERAQLHYERGVLYDSL------GLRALARNDFSQALALRPDM 97 (296)
T ss_pred HHHHHHHHHHHHcccc------------------CCcHhhHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHcCCCC
Confidence 4678888877664321 12234566677666655443 34577888999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000196 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1874)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1874)
..+|+.+|.+.... .-...|+..|-+++.+. +++ ......+-.+++..|...+..+.+++
T Consensus 98 ~~a~~~lg~~~~~~--------------g~~~~A~~~~~~Al~l~-----P~~-~~a~~~lg~~l~~~g~~~eA~~~~~~ 157 (296)
T PRK11189 98 ADAYNYLGIYLTQA--------------GNFDAAYEAFDSVLELD-----PTY-NYAYLNRGIALYYGGRYELAQDDLLA 157 (296)
T ss_pred HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999775531 12337889999999885 233 33445555666777888887778888
Q ss_pred cccCCChh
Q 000196 1792 GFAHVNIN 1799 (1874)
Q Consensus 1792 ~~~~ip~~ 1799 (1874)
.+..=|.+
T Consensus 158 al~~~P~~ 165 (296)
T PRK11189 158 FYQDDPND 165 (296)
T ss_pred HHHhCCCC
Confidence 77666654
No 312
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=72.77 E-value=4 Score=30.94 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=17.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHH
Q 000196 1361 ESWYEKLQRWDDALKAYTNKA 1381 (1874)
Q Consensus 1361 ~~~~E~lg~W~~Al~~y~~~~ 1381 (1874)
+..|.+.|+|++|.++|++.+
T Consensus 6 g~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 6 GRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 346899999999999999955
No 313
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=72.61 E-value=12 Score=47.91 Aligned_cols=187 Identities=19% Similarity=0.158 Sum_probs=115.6
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcc
Q 000196 25 ALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGEN 104 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~ 104 (1874)
.+.-|++-.+++....| .-|-.+++.....++.+.+ .++|+..+...+...+..-|.-.+.++..|+.....+
T Consensus 331 i~p~l~kLF~~~Dr~iR---~~LL~~i~~~i~~Lt~~~~---~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~- 403 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIR---LLLLQYIEKYIDHLTKQIL---NDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR- 403 (690)
T ss_pred hhhhHHHHhcCcchHHH---HHHHHhHHHHhhhcCHHhh---cchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-
Confidence 33444444444432333 2356666666677776644 3456777777778888888998999999998775222
Q ss_pred hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhh-hcCCCcchhHHHHHHHHHHHHhh
Q 000196 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDW-LRGDRVEYRRFAAVLILKEMAEN 183 (1874)
Q Consensus 105 ~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~-l~~~~~~~~r~aA~~~l~~la~~ 183 (1874)
+.-.....|+...-+ +.+...|....-|+|+++.+- .+..-...+..++.- + .+.-...|.|++..+....+.
T Consensus 404 -~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l---~~~~R~~vL~~aftral-kdpf~paR~a~v~~l~at~~~ 477 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRAL-KDPFVPARKAGVLALAATQEY 477 (690)
T ss_pred -hhcHHHHHHHHhhCc-cccCcccccceeeeccccccc---chhhhccccchhhhhhh-cCCCCCchhhhhHHHhhcccc
Confidence 111223445555544 456778888888888887651 111111112222221 1 233446789998887654433
Q ss_pred cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 184 ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 184 ~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
-.....-.+|+|.+.....|++..||..|..++++++..+.
T Consensus 478 --~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 478 --FDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred --cchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 22345566788888888899999999999999998877554
No 314
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=72.58 E-value=1e+02 Score=39.33 Aligned_cols=187 Identities=19% Similarity=0.230 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc
Q 000196 1547 RNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL 1626 (1874)
Q Consensus 1547 ~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~ 1626 (1874)
.|+..-..||..- .-..|+ .-+.|+--.++--.+..++.|...|.++.... +.++|.+-++++.|..
T Consensus 598 gdv~~ar~il~~a-f~~~pn-seeiwlaavKle~en~e~eraR~llakar~~s-----------gTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 598 GDVPAARVILDQA-FEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSIS-----------GTERVWMKSANLERYL 664 (913)
T ss_pred CCcHHHHHHHHHH-HHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccC-----------CcchhhHHHhHHHHHh
Confidence 4554444444322 222344 46899999999999999999999998876532 3579999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh
Q 000196 1627 GEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ 1706 (1874)
Q Consensus 1627 g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~ 1706 (1874)
|+ .++|++.|++-++.+. ..-|.|+.+|.-..+. +.++.....|..-++
T Consensus 665 d~---~eeA~rllEe~lk~fp----------------------~f~Kl~lmlGQi~e~~------~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 665 DN---VEEALRLLEEALKSFP----------------------DFHKLWLMLGQIEEQM------ENIEMAREAYLQGTK 713 (913)
T ss_pred hh---HHHHHHHHHHHHHhCC----------------------chHHHHHHHhHHHHHH------HHHHHHHHHHHhccc
Confidence 95 6899999987665432 3567799999987664 467888999999999
Q ss_pred hcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHH--HhcCCcHH
Q 000196 1707 CATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLW--FNHGATEE 1784 (1874)
Q Consensus 1707 ~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLw--f~~g~~~~ 1784 (1874)
.+|...--|..+|..-.+.. -++.|=.-+-++.- +++++. .+.|=++= +..|+.+.
T Consensus 714 ~cP~~ipLWllLakleEk~~--------------~~~rAR~ildrarl-----kNPk~~---~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDG--------------QLVRARSILDRARL-----KNPKNA---LLWLESIRMELRAGNKEQ 771 (913)
T ss_pred cCCCCchHHHHHHHHHHHhc--------------chhhHHHHHHHHHh-----cCCCcc---hhHHHHHHHHHHcCCHHH
Confidence 99999999999887643321 11111111222211 123332 23333333 34477777
Q ss_pred HHHHHHhcccCCChh
Q 000196 1785 VQIALQKGFAHVNIN 1799 (1874)
Q Consensus 1785 v~~~~~~~~~~ip~~ 1799 (1874)
....|.+.++..|..
T Consensus 772 a~~lmakALQecp~s 786 (913)
T KOG0495|consen 772 AELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHHHHhCCcc
Confidence 777777777777754
No 315
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=72.05 E-value=40 Score=34.68 Aligned_cols=100 Identities=10% Similarity=0.088 Sum_probs=66.2
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLT 647 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~ 647 (1874)
..++|+..-..+++.++... - ...+.++.|-.-++..++.|...|+.+|..++++++..+...+ ++++..+..
T Consensus 13 l~~~dw~~~l~icD~i~~~~-~----~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 13 LLEEDWELILEICDLINSTP-D----GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred CCCcCHHHHHHHHHHHhCCC-c----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHH
Confidence 34677777777788775321 1 1246788888889999999999999999999999976553322 233433333
Q ss_pred HHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 648 YLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
.+......+..++..+.++..-+...+
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 333331223377788888777776653
No 316
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=71.51 E-value=9.1 Score=33.44 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=37.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
.+.+.|+|++|.++|++.+...++ ..+...++-+|+...|+|+.-....+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD---NPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT---HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 467889999999999998865433 25677888899999999976655544
No 317
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=1.5e+02 Score=42.24 Aligned_cols=220 Identities=13% Similarity=0.134 Sum_probs=132.3
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV 190 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~ 190 (1874)
+...++.+. ..|+.....|-+.++.+.....+..-..+-.+......-+--+.+...|.+.-.++..+...+.+.+.|
T Consensus 43 l~~I~kkL~--KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp 120 (1312)
T KOG0803|consen 43 LDIIVKKLL--KRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSP 120 (1312)
T ss_pred HHHHHHHHh--ccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334455554 357888888888888887753222211111111112222224556678999999999999999999999
Q ss_pred chHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh--------hccCC-----C-----
Q 000196 191 HVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD--------GLGRN-----A----- 252 (1874)
Q Consensus 191 ~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~--------~l~~~-----~----- 252 (1874)
|+..++|..+.+--|+...|-.+|..+++.++..-..|.. -..+-..+++-+.+ .+.+. .
T Consensus 121 ~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v--~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k 198 (1312)
T KOG0803|consen 121 FLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHV--WFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESK 198 (1312)
T ss_pred HHHhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHH--HHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHh
Confidence 9999999999999999999999999998888762221211 00111222222221 12210 0
Q ss_pred ChhHHHHHHHHHHHHHHcchhh--hH---HHHHHH--HHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHH
Q 000196 253 PVHSIHGSLLAVGELLRNTGEF--MM---SRYREV--AEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICM 325 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~--~~---~~~~~i--~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~ 325 (1874)
-.++.-.++.++-.+..+.+.. +. +.+..+ .+..-.+..++.+.|+.+..+++-.+....+..+.+.-...+.
T Consensus 199 ~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~ 278 (1312)
T KOG0803|consen 199 YQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLK 278 (1312)
T ss_pred hHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhh
Confidence 1245667788888777655421 11 111111 2244566688999999999888888777666544443334445
Q ss_pred HHHHHhhcC
Q 000196 326 NHILTVLRI 334 (1874)
Q Consensus 326 ~~Ll~~L~~ 334 (1874)
+.+...++.
T Consensus 279 ~~~~~~~~~ 287 (1312)
T KOG0803|consen 279 PVLLGSIDS 287 (1312)
T ss_pred HHHHccccc
Confidence 555555443
No 318
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=70.98 E-value=18 Score=37.91 Aligned_cols=65 Identities=22% Similarity=0.333 Sum_probs=43.9
Q ss_pred hhhhHHHHHHhhcCCCc---HHHHHHHHHHHHhhcccccccchhH-hHHHHHHHHhCCCCHHHHHHHHHHH
Q 000196 1026 MHLLLPALIRLFKVDAP---VDIRRAAIETLTRLIPRVQVTGHIS-SLVHHLKLVLDGKNDELRKDAVDAL 1092 (1874)
Q Consensus 1026 ~~~ilp~l~~~~~~~~~---~~vr~~ai~~l~~l~~~~~~~~~~~-~ii~~l~~~l~~~~~~l~~~al~~L 1092 (1874)
.+.++..+.+++..... .++...++++++..+.-.+...... .+++.+...+. +++++..|.+||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 34455555555544322 7889999999999888766554433 47777778884 456789998886
No 319
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=70.86 E-value=1.4e+02 Score=33.46 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=74.9
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHH-HHHHHHHHhhhCCCcchHH
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVL-ASKVLGHLARAGGAMTADE 149 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~-aa~~lg~l~~~~g~~~~~~ 149 (1874)
...+.+|.+++--..|..|+..+....... ....+..+ ...++..+.=++.+. +..++|.+... .+
T Consensus 48 ~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~---~~~~~~~~----~~~l~~~~~Wd~vD~~~~~i~g~~~~~----~~-- 114 (208)
T cd07064 48 WELVLELWQQPEREYQYVAIDLLRKYKKFL---TPEDLPLL----EELITTKSWWDTVDSLAKVVGGILLAD----YP-- 114 (208)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHhcC---CHHHHHHH----HHHHcCCchHHHHHHHHHHHhHHHHhC----Ch--
Confidence 344456777655444554444333322111 12222222 234433333455554 44455665442 11
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
...+.+.+|..++.-|.+|.|.+..+...-. .....++..+-..+.|++.-|+.|...+|++...
T Consensus 115 --~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~-------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k 179 (208)
T cd07064 115 --EFEPVMDEWSTDENFWLRRTAILHQLKYKEK-------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSK 179 (208)
T ss_pred --hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhc
Confidence 1246788999998999988887655543322 2234556667778899999999999999987653
No 320
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=70.75 E-value=2.5e+02 Score=34.60 Aligned_cols=233 Identities=17% Similarity=0.140 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhcc---CCCCcchhhccHhhHHHHHHHhC-C-CCHHHHHHHHHHHHhhhcC--C
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLY---GNRGFDDFLAQADCLSAIFAALN-D-EDFDVREYAISVAGRLSEK--N 630 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~---~~~~f~~~L~~~~~l~~L~~~l~-D-~~~~VR~~a~~~l~~l~~~--~ 630 (1874)
+....+.+......|+ .+||.+.+..+. .+..+-..+-+-.+--++..++. | .+..-|+.|++++.++.+. .
T Consensus 23 ~~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 23 LSFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred HHHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 3334444443345555 999999988773 01111111100011112222332 2 2445699999999999988 4
Q ss_pred cCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHH
Q 000196 631 PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLV 710 (1874)
Q Consensus 631 p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~ 710 (1874)
|..+-..+-+.+ ..+-.. .+.+.|..|.+.|.+++-..|+.+..- .-+..++..+.|+ ...+.+.++.
T Consensus 102 ~~~~~~~vvral----vaiae~-~~D~lr~~cletL~El~l~~P~lv~~~--gG~~~L~~~l~d~-----~~~~~~~l~~ 169 (371)
T PF14664_consen 102 PKEIPRGVVRAL----VAIAEH-EDDRLRRICLETLCELALLNPELVAEC--GGIRVLLRALIDG-----SFSISESLLD 169 (371)
T ss_pred cccCCHHHHHHH----HHHHhC-CchHHHHHHHHHHHHHHhhCHHHHHHc--CCHHHHHHHHHhc-----cHhHHHHHHH
Confidence 444433333323 233233 345678889999999886665543210 1123344444442 2223334343
Q ss_pred HHHHHHHhcccchhhcHHh--HHHHHHHHHhcC------cch--hhHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Q 000196 711 TVGDLARVGGFGMRQYISE--LMPLIVEALLDG------AAV--TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780 (1874)
Q Consensus 711 ~l~~La~~~g~~~~~~~~~--llp~l~~~l~d~------~~~--~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~ 780 (1874)
++=.+... +....|+.. =+..++..+.|. .+. ++-..+..++..+.++-...+.--..--.-+..|+.
T Consensus 170 ~lL~lLd~--p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~ 247 (371)
T PF14664_consen 170 TLLYLLDS--PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVD 247 (371)
T ss_pred HHHHHhCC--cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHH
Confidence 33333221 222222211 133333333332 111 233566777777776654432111111156888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcccCc
Q 000196 781 MLNGELVWSTRREVLKVLGIMGALDP 806 (1874)
Q Consensus 781 ~l~~~~~~~vr~~al~~lg~lgaldp 806 (1874)
.|..+ +.++|..++..+-.+--+.|
T Consensus 248 ~L~~p-~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 248 SLRLP-NPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHCCCC
Confidence 88765 67899999988766544443
No 321
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=70.69 E-value=5.4 Score=29.86 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1700 AYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1700 ~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
.|++|++++|+...+|+.+|.+...
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~ 25 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN 25 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999987654
No 322
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=70.58 E-value=27 Score=42.98 Aligned_cols=107 Identities=20% Similarity=0.036 Sum_probs=74.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1874)
.-|..+...+.|..|+.+.+..+... ++.....-.+...|..+|+.+.|...+..+-.. . . .-..+..|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~------P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~ 80 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD------PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 45788899999999998887776532 344567778889999999999998887754321 1 1 11234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA 1405 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg 1405 (1874)
.++|+|++|+..|++.+...++. .+...-+-+|...+-
T Consensus 81 ~~lg~~~eA~~~~~~al~l~P~~---~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLAPGD---SRFTKLIKECDEKIA 118 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHH
Confidence 88999999999999988755443 233344555655553
No 323
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=70.13 E-value=47 Score=42.68 Aligned_cols=201 Identities=17% Similarity=0.131 Sum_probs=114.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHH
Q 000196 1617 YAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPE 1696 (1874)
Q Consensus 1617 ~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~ 1696 (1874)
+=++.++-..|+ .++|++.|++....+.. ...-.+..|++++++|++ ++
T Consensus 8 LY~~~il~e~g~---~~~AL~~L~~~~~~I~D---------------k~~~~E~rA~ll~kLg~~-------------~e 56 (517)
T PF12569_consen 8 LYKNSILEEAGD---YEEALEHLEKNEKQILD---------------KLAVLEKRAELLLKLGRK-------------EE 56 (517)
T ss_pred HHHHHHHHHCCC---HHHHHHHHHhhhhhCCC---------------HHHHHHHHHHHHHHcCCH-------------HH
Confidence 334556656674 68999999875443221 112346788999888886 56
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHH
Q 000196 1697 IIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLW 1776 (1874)
Q Consensus 1697 i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLw 1776 (1874)
....|...++.+|++..-+..+....--... . .. .. ......+...+. ..+...+.+|-+-|-
T Consensus 57 A~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~-~-----~~---~~-~~~~~~~y~~l~-------~~yp~s~~~~rl~L~ 119 (517)
T PF12569_consen 57 AEKIYRELIDRNPDNYDYYRGLEEALGLQLQ-L-----SD---ED-VEKLLELYDELA-------EKYPRSDAPRRLPLD 119 (517)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc-c-----cc---cc-HHHHHHHHHHHH-------HhCccccchhHhhcc
Confidence 7789999999999988777666544311000 0 00 01 122333333332 245566788888887
Q ss_pred HhcCCcH--HHHHHHHhcc-cCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH----------------hhCchh
Q 000196 1777 FNHGATE--EVQIALQKGF-AHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIG----------------QSHPQA 1837 (1874)
Q Consensus 1777 f~~g~~~--~v~~~~~~~~-~~ip~~~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~----------------~~hPqa 1837 (1874)
|-.|+.- .+..-+...+ +.||+ .|-.+-|- ...+. =..++.+|+..+. .+-|..
T Consensus 120 ~~~g~~F~~~~~~yl~~~l~KgvPs-lF~~lk~L----y~d~~--K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~ 192 (517)
T PF12569_consen 120 FLEGDEFKERLDEYLRPQLRKGVPS-LFSNLKPL----YKDPE--KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPST 192 (517)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCch-HHHHHHHH----HcChh--HHHHHHHHHHHHHHhhcccCCCCCccccccCCchH
Confidence 7766431 1111222222 22333 33333331 12222 2456666666653 345888
Q ss_pred hHHHHHHHhcC-CcHHHHHHHHHHHHHHhhccCccc
Q 000196 1838 LMYPLLVACKS-ISNLRRAAAQEVVDKVRQHSGTTR 1872 (1874)
Q Consensus 1838 ~ly~L~v~~kS-~~~~R~~~a~~Il~~~~~~~~~l~ 1872 (1874)
.+|-+...+.- +.......|.+.+++.-.|.|+++
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ 228 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV 228 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH
Confidence 89977765542 223345679999999999999985
No 324
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.06 E-value=29 Score=41.67 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=89.3
Q ss_pred HHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc-c
Q 000196 643 IQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-F 721 (1874)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~ 721 (1874)
-+++..+.+- +...|..|...|-++..+.+..+..+...+++.+.+...|+ +..|+.+....+..+....+ +
T Consensus 61 keLl~qlkHh--NakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~-----~~~vR~~~~qll~~~i~~~~~e 133 (393)
T KOG2149|consen 61 KELLSQLKHH--NAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDD-----DSLVRDALYQLLDSLILPACKE 133 (393)
T ss_pred HHHHhhhcCc--hHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCc-----cccHHHHHHHHHHHHHhhcchh
Confidence 3455555553 56788889999988888877777777777888888887775 67788888888877665444 5
Q ss_pred chhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcccc
Q 000196 722 GMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYV 764 (1874)
Q Consensus 722 ~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~ 764 (1874)
++.|++.-++|.+..+|... ..+.|..++..|..++...+..
T Consensus 134 ~~sp~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 134 DQSPMVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred hhcchHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHcChH
Confidence 67999999999999999876 5789999999999998877543
No 325
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=70.04 E-value=2e+02 Score=32.70 Aligned_cols=122 Identities=16% Similarity=0.038 Sum_probs=80.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....++..+....+.|+++.|...+.++....|... ..+...+..+..+...|+ ..+|+..+++++....
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~la~~~~~~~~---~~~A~~~~~~~l~~~p 101 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-------YAEQAQLDLAYAYYKSGD---YAEAIAAADRFIRLHP 101 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-------hHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHCc
Confidence 478899999999999999999999998877655310 113455677778888884 6899999999876432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCC--CCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPP--GLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~--~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1874)
.. .....++.++|.-..+.-. ..+....++..+.|.++++.+|+...+|..+
T Consensus 102 ~~-------------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 102 NH-------------------PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred CC-------------------CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 11 0112223333333222100 0112346778999999999999887766544
No 326
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.59 E-value=11 Score=40.63 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHH---HHHHhHHHhHHHHHHHHHHhhc
Q 000196 875 HQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVS---IVRQHIRKYLQELFSLISELWS 950 (1874)
Q Consensus 875 ~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~---~~~~~i~~y~~~i~~~i~~~~~ 950 (1874)
...+.+.+..++-..|.+.+|-|++++..+-.++.+.+..+.+..++.|..++. .+|+.+.||..++++++..+=+
T Consensus 131 rf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~~k~ 209 (262)
T KOG3961|consen 131 RFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNTFKN 209 (262)
T ss_pred chhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhhhhcc
Confidence 346788899999999999999999999999999999887777776665555544 4679999999999999876644
No 327
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=69.53 E-value=1.8e+02 Score=35.53 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=93.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch----hhhh-----hc
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE----LDVQ-----LK 1360 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~~~~-----~~ 1360 (1874)
.++..-..+|.|..|+.+.+..+... +......-.|..+|...|+.|.+.-.+...... .... ..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 44566778888889998888776532 233456678899999999999988877643321 1111 13
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCchhHHh-Hh-hHhHHHHHh------hCHHHHHHHHhhhcCCCChHHHHhHHHH
Q 000196 1361 ESWYEKLQRWDDALKAYTNKASQASNPHIVLEA-TL-GRMRCLAAL------ARWEELNNLCKEYWTPAEPAARLEMAPM 1432 (1874)
Q Consensus 1361 ~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~-~~-g~m~cl~~L------g~w~~l~~~~~~~~~~~~~~~~~~~~~~ 1432 (1874)
...+...|++++|+..|++.....+......+. .. ..+..+..- .+|+.+.......... .........
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~---~~~~~~~~~ 269 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD---HGLAFNDLH 269 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc---ccchHHHHH
Confidence 456889999999999999875432211111111 11 333333333 4687776554322111 111111225
Q ss_pred HHHHHHHcCChhhHHHHHhhc
Q 000196 1433 AANAAWNMGEWDQMAEYVSRL 1453 (1874)
Q Consensus 1433 ~a~aaw~l~~Wd~~~~~~~~~ 1453 (1874)
.+.++-..|+++.....+..+
T Consensus 270 ~a~~~~~~~~~~~a~~~L~~l 290 (355)
T cd05804 270 AALALAGAGDKDALDKLLAAL 290 (355)
T ss_pred HHHHHhcCCCHHHHHHHHHHH
Confidence 677777888999888777655
No 328
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=69.39 E-value=4.1e+02 Score=36.05 Aligned_cols=311 Identities=19% Similarity=0.197 Sum_probs=158.7
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHH
Q 000196 1250 VQSLEMAFSSPNIPPEILATLLNLAEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVE 1329 (1874)
Q Consensus 1250 ~~~l~~~l~~~~~p~~i~~~ll~l~e~m~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e 1329 (1874)
...+..++... |...+..+.++...+..+.+ ++ -++|.+|+..+|..-. ..|++...
T Consensus 400 ~~~l~K~~~~~---~~d~~a~l~laql~e~~d~~----------~s--L~~~~~A~d~L~~~~~--------~ip~E~LN 456 (1018)
T KOG2002|consen 400 SNVLGKVLEQT---PVDSEAWLELAQLLEQTDPW----------AS--LDAYGNALDILESKGK--------QIPPEVLN 456 (1018)
T ss_pred HHHHHHHHhcc---cccHHHHHHHHHHHHhcChH----------HH--HHHHHHHHHHHHHcCC--------CCCHHHHH
Confidence 33344444432 34566788888877776642 11 4577788877765432 24677788
Q ss_pred HHHHHHhhcCChHHHhHHHHHHhch------hhh------h---hcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhH
Q 000196 1330 ALIHINNQLHQHEAAVGILTYAQKE------LDV------Q---LKESWYEKLQRWDDALKAYTNKASQASNPHIVLEAT 1394 (1874)
Q Consensus 1330 ~L~~iy~~L~~~D~~~Gi~~~~~~~------~~~------~---~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~ 1394 (1874)
.+..++-.+|++..+.+-+..+... .+. + ..+..+|++++.+.|-+.|..-+.. +
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke----------h 526 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE----------H 526 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----------C
Confidence 8888888888888888777644322 111 1 1234589999999999999887654 3
Q ss_pred hhHhHHHHHhhCH--------HHHHHHHhhh-cCCCChHHHHhHH-HHHHHHHHHcCChhhHHHHHhhcCCC-Ccchhhc
Q 000196 1395 LGRMRCLAALARW--------EELNNLCKEY-WTPAEPAARLEMA-PMAANAAWNMGEWDQMAEYVSRLDDG-DESKLRG 1463 (1874)
Q Consensus 1395 ~g~m~cl~~Lg~w--------~~l~~~~~~~-~~~~~~~~~~~~~-~~~a~aaw~l~~Wd~~~~~~~~~~~~-~~~~~~~ 1463 (1874)
.|++.|+..||.- +....+.+.. .++.+|+.+.-+- -+....-|+.++- ......+..... +.+++.+
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k-~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK-KFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc-HHHHHHhhhccCCchhHHHH
Confidence 5677777777632 1111111111 1334566655444 2333444444431 122233332221 2233333
Q ss_pred cccccccCCCCCchHHHHHHHHHHhcC--hhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Q 000196 1464 LGNTAANGDGSSNGTFFRAVLLVRRGK--VLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTER 1541 (1874)
Q Consensus 1464 ~~~~~~~~~~~~~~~f~~a~~~i~~~~--~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~R 1541 (1874)
+||. ++++...=.++. -...|.+|.... ..++. ..| .++|..-
T Consensus 606 LGN~-----------~~~~l~~~~rn~ek~kk~~~KAlq~y---------~kvL~--~dp-------------kN~yAAN 650 (1018)
T KOG2002|consen 606 LGNV-----------YIQALHNPSRNPEKEKKHQEKALQLY---------GKVLR--NDP-------------KNMYAAN 650 (1018)
T ss_pred hhHH-----------HHHHhcccccChHHHHHHHHHHHHHH---------HHHHh--cCc-------------chhhhcc
Confidence 4431 111111000110 111233221110 11111 001 0112110
Q ss_pred hhh----ccCCHHHHHHHH-HHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHH
Q 000196 1542 IQG----TKRNVEVWQALL-AVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVM 1616 (1874)
Q Consensus 1542 l~~----~~~~~~~w~~iL-~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~ 1616 (1874)
=-| -...++.=-.|+ +||-..- ++.+.||.+|+.+-..|+|..|...-.+.+...- ....+.|.
T Consensus 651 GIgiVLA~kg~~~~A~dIFsqVrEa~~---~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~--------~~~~~~vl 719 (1018)
T KOG2002|consen 651 GIGIVLAEKGRFSEARDIFSQVREATS---DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY--------KKNRSEVL 719 (1018)
T ss_pred chhhhhhhccCchHHHHHHHHHHHHHh---hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCCHHHH
Confidence 000 011122112221 2333322 4578999999999999999999887665543211 12357888
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000196 1617 YAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1617 ~e~~k~lw~~g~~~~~~~Al~~l~~~~ 1643 (1874)
..-++.++..| +-.+|...+..-.
T Consensus 720 ~~Lara~y~~~---~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 720 HYLARAWYEAG---KLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHhh---hHHHHHHHHHHHH
Confidence 88888888888 3567776665543
No 329
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=69.03 E-value=2.7e+02 Score=33.86 Aligned_cols=179 Identities=14% Similarity=0.143 Sum_probs=93.5
Q ss_pred HHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHH-HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhc-----Cc-
Q 000196 114 YMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEV-EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENA-----ST- 186 (1874)
Q Consensus 114 ~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v-~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~-----p~- 186 (1874)
.+.++||.+-.++.....-+.|...++...-.. .++ ..++...++.++.-+.-..+.-+.-.++.+++.. ++
T Consensus 227 ~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe 305 (604)
T KOG4500|consen 227 MLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE 305 (604)
T ss_pred HHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch
Confidence 445555543344555555566666655421110 011 1245555555553333333444444555544431 11
Q ss_pred cch-hc-hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh----hHHHHHHHHHHHHHhhccCCCChhHHHHH
Q 000196 187 VFN-VH-VAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR----WRVQWYYRMFEATQDGLGRNAPVHSIHGS 260 (1874)
Q Consensus 187 ~~~-~~-l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~----~~~~~~~~i~~~~~~~l~~~~~~~~~~~a 260 (1874)
.|. -| =+++++.+...++..+.....++.-|++.+.+ ++.. .+.+++.++++.+.+.=.-..+.+.+|++
T Consensus 306 SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR----~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ 381 (604)
T KOG4500|consen 306 SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR----RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHAC 381 (604)
T ss_pred HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc----cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHH
Confidence 111 11 23488888899998888888999999998764 3321 23445556665554421111246889999
Q ss_pred HHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhcchhHHHH
Q 000196 261 LLAVGELLRNTG--EFMMSRYREVAEIVLRYLEHRDRLVRL 299 (1874)
Q Consensus 261 l~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~~~~~vr~ 299 (1874)
+.+|+-+.--.. ..+.| ..+.+.++.++....|.|..
T Consensus 382 lsALRnl~IPv~nka~~~~--aGvteaIL~~lk~~~ppv~f 420 (604)
T KOG4500|consen 382 LSALRNLMIPVSNKAHFAP--AGVTEAILLQLKLASPPVTF 420 (604)
T ss_pred HHHHHhccccCCchhhccc--cchHHHHHHHHHhcCCcchH
Confidence 999987754111 11111 12455666666655554443
No 330
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=68.92 E-value=48 Score=36.02 Aligned_cols=88 Identities=17% Similarity=0.297 Sum_probs=62.1
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhh---hcCC-CChHHHHhHHHHHHHHH
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKE---YWTP-AEPAARLEMAPMAANAA 1437 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~---~~~~-~~~~~~~~~~~~~a~aa 1437 (1874)
..|.+.|+.++|+++|.+.......+....+....++|-.-..|.|..+..+... .... .+.+.+..+.-+.+-+.
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~ 123 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLAN 123 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3489999999999999997655444444467778999999999999998877643 1111 22345556666666677
Q ss_pred HHcCChhhHHHH
Q 000196 1438 WNMGEWDQMAEY 1449 (1874)
Q Consensus 1438 w~l~~Wd~~~~~ 1449 (1874)
...+++..-.+.
T Consensus 124 l~~r~f~~AA~~ 135 (177)
T PF10602_consen 124 LAQRDFKEAAEL 135 (177)
T ss_pred HHhchHHHHHHH
Confidence 777777765553
No 331
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=68.83 E-value=42 Score=31.97 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=57.2
Q ss_pred HHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000196 240 MFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 240 i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
.|..++..+.++. .-+|-.|+..|+.+++... ......+.++..++..+++.++.|=..++..+..+|...++.
T Consensus 4 ~~~~al~~L~dp~-~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~ 77 (92)
T PF10363_consen 4 TLQEALSDLNDPL-PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE 77 (92)
T ss_pred HHHHHHHHccCCC-cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH
Confidence 3455666677765 4567778889999998554 444567778888899999999999999999999999876653
No 332
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=68.39 E-value=3.6e+02 Score=36.29 Aligned_cols=258 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc---hHHHHHHHHHhh
Q 000196 127 ILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH---VAEFVDAIWVAL 203 (1874)
Q Consensus 127 v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~---l~~il~~i~~~l 203 (1874)
++..+--+||+|+...+.+...+++-+++.+ ..-.+..+-.-+.-...+.-..| +...+|+|-..|
T Consensus 947 vra~~vvTlakmcLah~~LaKr~~P~lvkeL-----------e~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAKRLMPMLVKEL-----------EYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----------HhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHh
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh----------
Q 000196 204 RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE---------- 273 (1874)
Q Consensus 204 ~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~---------- 273 (1874)
+||.+.||+.+..-|..+++. ...+|--.++-..+..+-+.+ .+++.-|=.++++++.....
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~-------~~vKw~G~Lf~Rf~l~l~D~~-edIr~~a~f~~~~vL~~~~P~~f~~~FVe~ 1087 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQF-------GIVKWNGELFIRFMLALLDAN-EDIRNDAKFYISEVLQSEEPNFFPLNFVEY 1087 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhh-------hhhhcchhhHHHHHHHHcccC-HHHHHHHHHHHHHHHhhcCccchHHHHHHH
Q ss_pred ---------------------------------hhHHHHHHHHHHHHHHhhcchhH-HHHHHHHHhHhHhhhChhhHHHH
Q 000196 274 ---------------------------------FMMSRYREVAEIVLRYLEHRDRL-VRLSITSLLPRIAHFLRDRFVTN 319 (1874)
Q Consensus 274 ---------------------------------~~~~~~~~i~~~ll~~~~~~~~~-vr~~~~~~i~~la~~~~~~f~~~ 319 (1874)
.-.|.-=.++..++..+.+.... |....|.-|=.-+...--.|.+.
T Consensus 1088 i~~ln~~~~h~g~~n~~qs~r~~~~fSi~G~d~~aR~~Rm~IY~fLL~~~~de~rf~v~~kiC~~Ila~~~dG~l~~~D~ 1167 (1529)
T KOG0413|consen 1088 IIALNQARRHVGVGNHDQSDRGQVDFSIGGGDPLARPSRMAIYTFLLDSLDDESRFDVKMKICQRILAPIVDGELDFSDY 1167 (1529)
T ss_pred HHHHHHHHHhhCCCCCcccchhceeEeecCCCcccchhhhhHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcCcCChhhc
Q ss_pred HHHHHHHHHHHhhcCCCCc-------------------chHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCc
Q 000196 320 YLKICMNHILTVLRIPAER-------------------DSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSL 380 (1874)
Q Consensus 320 yl~~~~~~Ll~~L~~~~~R-------------------~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~ 380 (1874)
-...++.-.+.+|....-| ..+-.+=|.|...+.+.+..-+-+|+-.+++.|...+.....
T Consensus 1168 ~~q~lL~Daf~ILaskEi~l~~~rgk~p~~~~~dd~~~~~~eA~~~~i~~v~~~~~i~niIPiiIsLK~~Le~~~sPl~r 1247 (1529)
T KOG0413|consen 1168 NVQCLLDDAFLILASKEIQLKMDRGKNPNENAMDDPSPEVLEAATGFIQKVYLDHYIKNIIPIIISLKEFLEQHRSPLQR 1247 (1529)
T ss_pred cHHHHHHHHHHHHhhhhhhhhhhcCCCCccccccccChHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhcCCchHH
Q ss_pred hhHHHHHHHHHHhCCCchHHHHH
Q 000196 381 EALACVGNIARAMGPVMEPHVRG 403 (1874)
Q Consensus 381 ~a~~~l~~l~~~~g~~~~p~l~~ 403 (1874)
..+.|+..+...+...+...+..
T Consensus 1248 ~Lmh~LreilqDyrdE~~~~l~~ 1270 (1529)
T KOG0413|consen 1248 CLMHKLREILQDYRDEMMFELQR 1270 (1529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 333
>PRK14574 hmsH outer membrane protein; Provisional
Probab=68.24 E-value=4.6e+02 Score=36.15 Aligned_cols=124 Identities=10% Similarity=-0.051 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC-CC----cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPE-TS----HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~-~~----~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~ 1643 (1874)
...-.++.-..-.++++..|...+.++....|- .. +...+..+-.....-.+.++=..|+ ..+|.+.++++.
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd---l~~Ae~~le~l~ 443 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND---LPTAQKKLEDLS 443 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 333467777788899999999999998764331 10 0000000112333334444444564 578999999886
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
..-..+. .-...+|.++ .|+ ..+.+..+.|+.+..++|....+-+..|....
T Consensus 444 ~~aP~n~---------------~l~~~~A~v~----~~R---------g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al 495 (822)
T PRK14574 444 STAPANQ---------------NLRIALASIY----LAR---------DLPRKAEQELKAVESLAPRSLILERAQAETAM 495 (822)
T ss_pred HhCCCCH---------------HHHHHHHHHH----Hhc---------CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Confidence 5422110 1111233332 222 35788888898888889987666655554433
No 334
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=68.15 E-value=1.4e+02 Score=35.48 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
+..++..-...++-+-||+++|.+.+.++.+.+.+ ..-..++.+=+.-..|.. +..+|+...+++....
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD----------~~l~qLa~awv~l~~g~e-~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED----------SILTQLAEAWVNLATGGE-KYQDAFYIFEELSDKF 197 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC----------HHHHHHHHHHHHHHHTTT-CCCHHHHHHHHHHCCS
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----------HHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcc
Confidence 34566666677888999999999999998765432 234445554454455542 3578999999876433
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1874)
... ..--.-+|-|++.+|+|- +..+.+.+|.+.+|+...+....
T Consensus 198 ~~t---------------~~~lng~A~~~l~~~~~~-------------eAe~~L~~al~~~~~~~d~LaNl 241 (290)
T PF04733_consen 198 GST---------------PKLLNGLAVCHLQLGHYE-------------EAEELLEEALEKDPNDPDTLANL 241 (290)
T ss_dssp --S---------------HHHHHHHHHHHHHCT-HH-------------HHHHHHHHHCCC-CCHHHHHHHH
T ss_pred CCC---------------HHHHHHHHHHHHHhCCHH-------------HHHHHHHHHHHhccCCHHHHHHH
Confidence 211 001123678888888884 44556777888888877755544
No 335
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.79 E-value=34 Score=39.48 Aligned_cols=90 Identities=14% Similarity=0.088 Sum_probs=62.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh--hhh---hcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL--DVQ---LKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~--~~~---~~~~~~ 1364 (1874)
.+++.-.+-|.+-+|=-.+.....+. ...++.-.|.+.|..+++|..+--+....-..+ +++ -.+..|
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~-------~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF-------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC-------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH
Confidence 56777777777777766555544332 235788899999999999998865554221111 222 234569
Q ss_pred HHhcCHHHHHHHHHHHHhccCC
Q 000196 1365 EKLQRWDDALKAYTNKASQASN 1386 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~ 1386 (1874)
|.+++.++|+++|+..+...++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~ 322 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI 322 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc
Confidence 9999999999999998876544
No 336
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=67.11 E-value=51 Score=34.25 Aligned_cols=111 Identities=16% Similarity=0.200 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
+...+.+.......++|+..-..+++.++... -...+.++.|-.-+...++.++..|+.++..++++++..+...
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~-----~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~e 80 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSP-----DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHRE 80 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTST-----THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44455555444456677777777777775321 1124678888888999999999999999999999997655433
Q ss_pred H--HHHHHHHHHHHhhCCCChH--hHHHHHHHHHHHHHhC
Q 000196 638 L--RRHLIQLLTYLEQSSADNK--CREESAKLLGCLIRNC 673 (1874)
Q Consensus 638 l--~~~l~~~l~~l~~~~~~~~--~r~~a~~~L~~l~~~~ 673 (1874)
+ ++++..+..-+........ +|+.+..++..-...+
T Consensus 81 v~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 81 VASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 3 2333333333444312222 6888888888887766
No 337
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.01 E-value=22 Score=38.49 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=77.9
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHh---Cccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRN---CERL 676 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~---~~~~ 676 (1874)
+++.++..|.+.+..-|..|-+-+.+|....+..+.|.+.+++..+-..+... +.+....+++.|..++.. .+..
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr--d~ev~~~~Lkvlq~lv~~~~~vG~a 192 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR--DDEVICRTLKVLQQLVVSVGCVGAA 192 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhccccchh
Confidence 46677777777777667667666667777777788999988877776666554 556666777777777654 5688
Q ss_pred cccchHHHHHHHHHHhh------ccCCCCCChhHHHHHHHHHHHHHHhcccc
Q 000196 677 IRPYIAPIHKALVARLL------EGTGINANNGIISGVLVTVGDLARVGGFG 722 (1874)
Q Consensus 677 ~~py~~~il~~ll~~l~------~~~~~~~~~~v~~~~~~~l~~La~~~g~~ 722 (1874)
+.||..++++++-..=. |+...+.+.++-.-+-.++..|-..+|+.
T Consensus 193 LVPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpn 244 (262)
T KOG3961|consen 193 LVPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPN 244 (262)
T ss_pred hhhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCCcc
Confidence 88999888887644321 11111122233333345666666666654
No 338
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=66.41 E-value=1.1e+02 Score=33.16 Aligned_cols=116 Identities=15% Similarity=0.016 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~ 1692 (1874)
....+..+..++..|+ ..+|+..+++.+...... ...+.++..+|.=.... .
T Consensus 35 a~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~-------------------~~~~~~~~~la~~~~~~------g 86 (172)
T PRK02603 35 AFVYYRDGMSAQADGE---YAEALENYEEALKLEEDP-------------------NDRSYILYNMGIIYASN------G 86 (172)
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhcc-------------------chHHHHHHHHHHHHHHc------C
Confidence 4556778888888885 689999998876431100 00122333333333322 2
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
..++....|.+|++.+|+...+|..+|......-+.....++......+...|+..|-+++...
T Consensus 87 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 87 EHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 3467888999999999999999988887765533222111111122234556677777666653
No 339
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.25 E-value=13 Score=36.97 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=45.0
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
-+++..+++.|....+...-..|+.-+|.+++..+.....-.+ -..-..+++++.+ ++++||.+|+.++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h-~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNH-EDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS--SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 3566667777754445556677888899999886543111111 1233455666665 4899999999998765
No 340
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=66.24 E-value=2.3e+02 Score=34.47 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=78.7
Q ss_pred hCCCChHhHHHHHHHHHHHHHhCccccccch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc--cchhhcH
Q 000196 651 QSSADNKCREESAKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG--FGMRQYI 727 (1874)
Q Consensus 651 ~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g--~~~~~~~ 727 (1874)
.+ ++......+.-+||.+++.-.-- ..++ ..+++.|+..+-.+...+.+..+..+++.++..++--.. ..+.|
T Consensus 325 ~S-~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~-- 400 (604)
T KOG4500|consen 325 RS-DDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP-- 400 (604)
T ss_pred cC-CchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc--
Confidence 44 55566667778899999763211 1111 245555655554433334466666777777776543111 12222
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
..+...++..+.-. ++.+.-.-+.++..+..+..+...-..+.|+++..|...-++.....+.-+..|++..
T Consensus 401 aGvteaIL~~lk~~-~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~ 472 (604)
T KOG4500|consen 401 AGVTEAILLQLKLA-SPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG 472 (604)
T ss_pred cchHHHHHHHHHhc-CCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence 11233344444322 2334444455555555444433222345689999999988777666777777777643
No 341
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.15 E-value=5.8e+02 Score=36.58 Aligned_cols=260 Identities=10% Similarity=0.096 Sum_probs=121.8
Q ss_pred HHHHHHHhhccc----CCChHHHHHHHHHHHHHhhh--C-CCcchHHHHHHH---HHHHhhhcCCCc-chhHHHHHHHHH
Q 000196 110 KFSNYMRTVFEV----KRDREILVLASKVLGHLARA--G-GAMTADEVEFQV---KMALDWLRGDRV-EYRRFAAVLILK 178 (1874)
Q Consensus 110 ~~~~~L~~~l~~----~~d~~v~~~aa~~lg~l~~~--~-g~~~~~~v~~~~---~~~~~~l~~~~~-~~~r~aA~~~l~ 178 (1874)
++.++...++.. ..|.+|+-..|=|+..+.+. + -..+...+...+ -+.+..|.+..+ --.|+. .++.
T Consensus 45 ~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~--~lle 122 (1266)
T KOG1525|consen 45 SLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYF--YLLE 122 (1266)
T ss_pred HHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHH--HHHH
Confidence 344444444332 45788888888888877664 1 112222222222 222333322111 112222 2333
Q ss_pred HHHhhcCcc-c-----hhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCC
Q 000196 179 EMAENASTV-F-----NVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA 252 (1874)
Q Consensus 179 ~la~~~p~~-~-----~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~ 252 (1874)
.++...+-. | ...+..++..++..++++++.--.- +.+++..+-..........+..++..+...-.++
T Consensus 123 tl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~----~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~- 197 (1266)
T KOG1525|consen 123 TLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN----MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDT- 197 (1266)
T ss_pred HHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH----HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCc-
Confidence 333332111 0 2355667777777888888754222 3333322221222344555666666665544332
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhh
Q 000196 253 PVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVL 332 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L 332 (1874)
+-+|...=..+++.+++-+.+.+...+...+.....+-..++.-...+|-.|-..+++ -+-.++|+|..-|
T Consensus 198 ----~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~-----ll~~vip~l~~eL 268 (1266)
T KOG1525|consen 198 ----IKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ-----LLLAVIPQLEFEL 268 (1266)
T ss_pred ----cHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH-----HHHHHHHHHHHHH
Confidence 3333333334444444433343333322222211222233333444455455444443 3456777777666
Q ss_pred cCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHH
Q 000196 333 RIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALAC 385 (1874)
Q Consensus 333 ~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~ 385 (1874)
..+. .|-.|...+|.|-..-+..+..--+++.......+.+....++...+++
T Consensus 269 ~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~ 323 (1266)
T KOG1525|consen 269 LSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVES 323 (1266)
T ss_pred hcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHH
Confidence 5543 5888888888876665554432234455555555555544444333333
No 342
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=65.61 E-value=91 Score=32.30 Aligned_cols=100 Identities=10% Similarity=0.055 Sum_probs=69.0
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLT 647 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~ 647 (1874)
..++|+..-..+++.++.... . ..+.++.+..-++..++.|...|+.+|..++++++..|-..+ ++++.+++.
T Consensus 14 l~~~dw~~ileicD~In~~~~-~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k 88 (139)
T cd03567 14 NREEDWEAIQAFCEQINKEPE-G----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK 88 (139)
T ss_pred CCCCCHHHHHHHHHHHHcCCc-c----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence 346777777777887753211 1 135688888889999999999999999999999987654333 344555555
Q ss_pred HHhh----CCCChHhHHHHHHHHHHHHHhCc
Q 000196 648 YLEQ----SSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 648 ~l~~----~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
-+.. +..+..++...+.++..-....+
T Consensus 89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4431 11456778888888777776655
No 343
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=65.47 E-value=1.8e+02 Score=32.23 Aligned_cols=130 Identities=13% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHH
Q 000196 1691 DESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDIL 1770 (1874)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~ 1770 (1874)
.+..++.+..|+++++.+|++..+|...|..+... .-...|+..|-+++.+.+ ...+...
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~--------------g~~~~A~~a~~~Al~l~P------~~~~~~~ 111 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWR--------------NDYDNALLAYRQALQLRG------ENAELYA 111 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHhCC------CCHHHHH
Confidence 35678899999999999999999999999775531 234488999999999852 2344444
Q ss_pred HHHH-HHHhcCC--cHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhH-HHHHHHh
Q 000196 1771 RLLT-LWFNHGA--TEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALM-YPLLVAC 1846 (1874)
Q Consensus 1771 RlLt-Lwf~~g~--~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPqa~l-y~L~v~~ 1846 (1874)
-+-+ +++..|. ..+....+.+.+..-|. +..+...+-....+. .+|.+|.- |.-....
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-----------------~~~al~~LA~~~~~~-g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDAN-----------------EVTALMLLASDAFMQ-ADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-----------------ChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence 4444 4677666 35666666666543332 223333333333333 35666664 4444445
Q ss_pred cCCcHHHHHHHH
Q 000196 1847 KSISNLRRAAAQ 1858 (1874)
Q Consensus 1847 kS~~~~R~~~a~ 1858 (1874)
.....+|++.-.
T Consensus 174 ~~~~~~r~~~i~ 185 (198)
T PRK10370 174 NSPRVNRTQLVE 185 (198)
T ss_pred CCCCccHHHHHH
Confidence 555666665443
No 344
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=65.40 E-value=1.1e+02 Score=31.84 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=58.5
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCCh
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEW 1443 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~W 1443 (1874)
+-..|++++|...|+..+...+++........++-+|+...|+|+.-....+.. .+..++.....+...++.+.|+|
T Consensus 58 ~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 58 AYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI---PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---cCcchHHHHHHHHHHHHHHCCCH
Confidence 445699999999999988754443211234567889999999998887776542 12344555666778889999998
Q ss_pred hhHHH
Q 000196 1444 DQMAE 1448 (1874)
Q Consensus 1444 d~~~~ 1448 (1874)
+.-..
T Consensus 135 ~~A~~ 139 (145)
T PF09976_consen 135 DEARA 139 (145)
T ss_pred HHHHH
Confidence 87554
No 345
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=65.16 E-value=4.8e+02 Score=36.03 Aligned_cols=69 Identities=12% Similarity=0.063 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000196 1533 IIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1874)
Q Consensus 1533 ~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1874)
.+...|.+=......+++....|+..=..-.........|.-.-.--|+.+.|+.+...|..++.+++.
T Consensus 187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 456778777676677777666555322222222345777888888889999999999999999888764
No 346
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=65.07 E-value=3.1e+02 Score=37.78 Aligned_cols=147 Identities=10% Similarity=0.036 Sum_probs=84.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
...+.|.+++......|+++.|...+.......|+. +.+.+-.+-+....++. .++... .++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~----------i~~yy~~G~l~~q~~~~---~~~~lv--~~l~~~ 93 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS----------ISALYISGILSLSRRPL---NDSNLL--NLIDSF 93 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc----------eehHHHHHHHHHhhcch---hhhhhh--hhhhhc
Confidence 458889999999999999999999998887776542 23333333344444432 222221 322222
Q ss_pred cCCCcccccc--ccccccccCcch---hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1647 SSCPVIQSAA--STSLTTATSTNV---PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~--~~~~~~~~~~~~---~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
....+-+-.. ..... ...+++ ..+|.||-++|++ ++....|.++++++|+...+--++|++
T Consensus 94 ~~~~~~~~ve~~~~~i~-~~~~~k~Al~~LA~~Ydk~g~~-------------~ka~~~yer~L~~D~~n~~aLNn~AY~ 159 (906)
T PRK14720 94 SQNLKWAIVEHICDKIL-LYGENKLALRTLAEAYAKLNEN-------------KKLKGVWERLVKADRDNPEIVKKLATS 159 (906)
T ss_pred ccccchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 2111000000 00000 000111 2356666666554 567889999999999999999999999
Q ss_pred HHHHHHhhhccCCCCchhhHHHHHHHHHH
Q 000196 1722 NTAVMSHYTLRGLPSVAPQFVVHAVTGYF 1750 (1874)
Q Consensus 1722 n~~~~~~~~~~~~~~~~~~~~~~ai~~f~ 1750 (1874)
..+. +.. ....|...||.-|.
T Consensus 160 ~ae~-dL~-------KA~~m~~KAV~~~i 180 (906)
T PRK14720 160 YEEE-DKE-------KAITYLKKAIYRFI 180 (906)
T ss_pred HHHh-hHH-------HHHHHHHHHHHHHH
Confidence 8775 321 22356666666654
No 347
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=64.94 E-value=3.3e+02 Score=33.23 Aligned_cols=69 Identities=20% Similarity=0.004 Sum_probs=47.0
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
..++.+.+.+..+.+|....+++.++..=.... =...-+.++..+.+||.|.++.||++...+++.++.
T Consensus 22 ~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 22 KIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 345555566666777776666655554433222 112235677888899999999999999999998875
No 348
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=64.37 E-value=3.9e+02 Score=33.88 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccc-hhchHHHHHHHHHh
Q 000196 125 REILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVF-NVHVAEFVDAIWVA 202 (1874)
Q Consensus 125 ~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~-~~~l~~il~~i~~~ 202 (1874)
...|-.|+++||.++.. +......+++. .++.+| +......|..|.+++.+.+..++..- .+..+.+.+.+...
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~---~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQP---LLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHH---HHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 35678899999999886 32223333332 233444 34555789999999999998865421 12245566667777
Q ss_pred hcCCc
Q 000196 203 LRDPT 207 (1874)
Q Consensus 203 l~D~~ 207 (1874)
|.++.
T Consensus 177 L~~~~ 181 (441)
T PF12054_consen 177 LENPE 181 (441)
T ss_pred HcCCC
Confidence 77553
No 349
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=64.17 E-value=1.2e+02 Score=32.00 Aligned_cols=99 Identities=18% Similarity=0.064 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~ 1692 (1874)
-...|+++-.+...|+ -.+|.+..+-++.- +. . ....---++-|+..+|+|
T Consensus 35 l~~lY~~A~~ly~~G~---l~~A~~~f~~L~~~-Dp--~------------~~~y~~gLG~~~Q~~g~~----------- 85 (157)
T PRK15363 35 LNTLYRYAMQLMEVKE---FAGAARLFQLLTIY-DA--W------------SFDYWFRLGECCQAQKHW----------- 85 (157)
T ss_pred HHHHHHHHHHHHHCCC---HHHHHHHHHHHHHh-Cc--c------------cHHHHHHHHHHHHHHhhH-----------
Confidence 4678999999999995 67888877765431 10 0 001112356777777776
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.+.+..|..|..++|+++.++++.|..+..+= -...|.++|-.+|..+
T Consensus 86 --~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG--------------~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 86 --GEAIYAYGRAAQIKIDAPQAPWAAAECYLACD--------------NVCYAIKALKAVVRIC 133 (157)
T ss_pred --HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC--------------CHHHHHHHHHHHHHHh
Confidence 56789999999999999999999998766531 2347888888888875
No 350
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=63.80 E-value=30 Score=30.12 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=49.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1574 KFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1574 k~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
..+....+.|+++.|...+.++....|. .+.+.+..+.+++.+|+ ..+|+..++..+..
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD----------NPEAWYLLGRILYQQGR---YDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT----------HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 4677888999999999999999887652 47889999999999995 68999998887653
No 351
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=63.26 E-value=3.9e+02 Score=33.56 Aligned_cols=120 Identities=11% Similarity=0.028 Sum_probs=70.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...++.++++..+.|+++.|...+.+.++..|+. .........++..-..+ +...+++.++...+.-
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~---------~~~~~~~l~~~~~l~~~--~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD---------RAISLPLCLPIPRLKPE--DNEKLEKLIEKQAKNV 329 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---------ccchhHHHHHhhhcCCC--ChHHHHHHHHHHHHhC
Confidence 468899999999999999999999999998765531 11100011112211222 2355666666544321
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHH--HHHhhcccchHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYR--NATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~--~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
..+++ ..-...++++++..|+| ++..++|+ .+.+.+|+.+. +.++|....+
T Consensus 330 p~~~~-------------~~ll~sLg~l~~~~~~~-------------~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~ 382 (409)
T TIGR00540 330 DDKPK-------------CCINRALGQLLMKHGEF-------------IEAADAFKNVAACKEQLDAND-LAMAADAFDQ 382 (409)
T ss_pred CCChh-------------HHHHHHHHHHHHHcccH-------------HHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH
Confidence 11000 00112457777777777 45677888 47778887766 4467766543
No 352
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=62.39 E-value=12 Score=29.23 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 194 EFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 194 ~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
..+|.+...|.++++.||+.|+.||+.+.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46788899999999999999999998764
No 353
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=62.04 E-value=4.6e+02 Score=33.95 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
..+.++-=|++-.+.|++..|..++..+..++.. +..+.--.+|++-..|+ -++|.+.+..|+.+-.
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~----------DRyiNsK~aKy~LRa~~---~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLA----------DRYINSKCAKYLLRAGR---IEEAEKTASLFTREDV 293 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh----------hHHHHHHHHHHHHHCCC---HHHHHHHHHhhcCCCC
Confidence 3788889999999999999999999988877542 34556668899888884 6789998888765321
Q ss_pred C-CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh--h-------cccchHHHHH
Q 000196 1648 S-CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ--C-------ATKWGKAWHS 1717 (1874)
Q Consensus 1648 ~-~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~--~-------~~~~~k~w~~ 1717 (1874)
. ..+...-...-| -.-.|++|.+.|+|-..+. ....|.++|..-.+ + .....++|..
T Consensus 294 ~~~~~L~~mQc~Wf-------~~e~a~a~~r~~~~~~ALk------~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~ 360 (517)
T PF12569_consen 294 DPLSNLNDMQCMWF-------ETECAEAYLRQGDYGLALK------RFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVD 360 (517)
T ss_pred CcccCHHHHHHHHH-------HHHHHHHHHHHhhHHHHHH------HHHHHHHHHHHHhcccccHHHHHHhhccHHHHHH
Confidence 0 000000000000 1125788888888865542 24445555543221 1 1122345555
Q ss_pred HHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHH
Q 000196 1718 WALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFH 1751 (1874)
Q Consensus 1718 wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~ 1751 (1874)
+=.+.+.+..+. .-.+.+..||+-|++
T Consensus 361 ~L~~ed~l~~~~-------~y~raa~~ai~iYl~ 387 (517)
T PF12569_consen 361 MLRWEDKLRSHP-------FYRRAAKGAIRIYLE 387 (517)
T ss_pred HHHHHHHhhcCH-------HHHHHHHHHHHHHHH
Confidence 555555444321 123455667777765
No 354
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=61.15 E-value=2e+02 Score=34.10 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHh-cCHHHHHHHHHHHHhc---cCCCchhHHhHhhHhHHH
Q 000196 1326 AVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKL-QRWDDALKAYTNKASQ---ASNPHIVLEATLGRMRCL 1401 (1874)
Q Consensus 1326 ~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~l-g~W~~Al~~y~~~~~~---~~~~~~~~~~~~g~m~cl 1401 (1874)
++++.-+++|...|+++.+..++... +..||.. |++++|+++|++...- ...+....+.....-.++
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~l---------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKEL---------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHH---------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH---------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 45667788999999999887766532 2247777 8999999999987642 112211123445566667
Q ss_pred HHhhCHHHHHHHHhhhcCC----C--ChHHHHhHHHHHHHHHHHcCChhhHHHHHhh
Q 000196 1402 AALARWEELNNLCKEYWTP----A--EPAARLEMAPMAANAAWNMGEWDQMAEYVSR 1452 (1874)
Q Consensus 1402 ~~Lg~w~~l~~~~~~~~~~----~--~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~ 1452 (1874)
..+|+|+.-.+..+..... . ....+. ..--+.-+....||....++.++.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~-~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE-YFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH-HHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHH-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888887666555432211 0 112222 111223355566777666665554
No 355
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=61.03 E-value=1e+02 Score=38.15 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=74.8
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch----h-hhhhcHHHHHH
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE----L-DVQLKESWYEK 1366 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~-~~~~~~~~~E~ 1366 (1874)
.++-...+.|..|+-++|..... . ++..-.|.++|...++...+.-++..+-.. . -+......+-+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~--------~-pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRER--------D-PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhc--------C-CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 34444556788888888765432 1 345556889998888887777666543221 1 12344556788
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
.|+++.|+++.++..+..|+ + .+.-..+.+||..+|+|+.-.....
T Consensus 247 k~~~~lAL~iAk~av~lsP~--~-f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS--E-FETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch--h-HHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 89999999999988765443 3 3444668999999999986654444
No 356
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=60.96 E-value=27 Score=44.14 Aligned_cols=79 Identities=18% Similarity=0.303 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCChHHHhHHHHHHhchhh-------hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000196 1329 EALIHINNQLHQHEAAVGILTYAQKELD-------VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1874)
Q Consensus 1329 e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-------~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1874)
+.-|++|.+||+.-..+-+++.-...-+ ....+..+-.+..|++|-++|..-- .+.+.|.||
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~-----------~~e~~~ecl 832 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG-----------DTENQIECL 832 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------chHhHHHHH
Confidence 3457788888888888777774211111 1111122445667999999997531 246799999
Q ss_pred HHhhCHHHHHHHHhhhc
Q 000196 1402 AALARWEELNNLCKEYW 1418 (1874)
Q Consensus 1402 ~~Lg~w~~l~~~~~~~~ 1418 (1874)
..|.+++.|..++...-
T Consensus 833 y~le~f~~LE~la~~Lp 849 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLP 849 (1189)
T ss_pred HHHHhhhhHHHHHHhcC
Confidence 99999999999988763
No 357
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.49 E-value=3.4e+02 Score=32.00 Aligned_cols=293 Identities=14% Similarity=0.160 Sum_probs=139.1
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC--CCHHHHHHHHHHHHhhhcCCcCccchHHHHHH-----
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND--EDFDVREYAISVAGRLSEKNPAYVLPALRRHL----- 642 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D--~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l----- 642 (1874)
.+.|+..+-...+.++.....--|-+-..+-+..++..|++ ++.++--..+..+..-+-.+ ..-|+.+
T Consensus 116 a~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h-----E~nrQ~~m~~~i 190 (461)
T KOG4199|consen 116 AESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH-----EVNRQLFMELKI 190 (461)
T ss_pred hhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-----HHHHHHHHHhhH
Confidence 35666666666666653100000111111224444444444 35566666776666544433 1122222
Q ss_pred HHHHH-HHhhCCCChHhHHHHHHHHHHHHHhCccc-------cccchH-----HHHHHHHHHhhccCCCCCChhHHHHHH
Q 000196 643 IQLLT-YLEQSSADNKCREESAKLLGCLIRNCERL-------IRPYIA-----PIHKALVARLLEGTGINANNGIISGVL 709 (1874)
Q Consensus 643 ~~~l~-~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-------~~py~~-----~il~~ll~~l~~~~~~~~~~~v~~~~~ 709 (1874)
.+++. .+... +-.+.-.+..+.+..+.- ++- ...|.. .++..|+..++.. .+|++...++
T Consensus 191 l~Li~~~l~~~-gk~~~VRel~~a~r~l~~--dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~----~dp~~L~~l~ 263 (461)
T KOG4199|consen 191 LELILQVLNRE-GKTRTVRELYDAIRALLT--DDDIRVVFGQAHGHARTIAKEGILTALTEALQAG----IDPDSLVSLS 263 (461)
T ss_pred HHHHHHHHccc-CccHHHHHHHHHHHHhcC--CCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc----CCccHHHHHH
Confidence 22333 23333 223333455555555531 111 112222 2455666666654 2566777777
Q ss_pred HHHHHHHHhcccchhhcHHhH--HHHHHHHHhcCcchhhHHHH---HHHHHHHHhhcccc--ccccccchHHHHHHHHHh
Q 000196 710 VTVGDLARVGGFGMRQYISEL--MPLIVEALLDGAAVTKREVA---VSTLGQVVQSTGYV--ITPYNEYPQLLGLLLKML 782 (1874)
Q Consensus 710 ~~l~~La~~~g~~~~~~~~~l--lp~l~~~l~d~~~~~~r~~A---~~~Lg~l~~~~~~~--i~p~~~~p~ll~~Ll~~l 782 (1874)
.+++.||... .+-.-+.+. +..+++.+.|..+...|+.+ ++.|..++.+-... |---.-.|.++..+..
T Consensus 264 ~tl~~lAVr~--E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~-- 339 (461)
T KOG4199|consen 264 TTLKALAVRD--EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALR-- 339 (461)
T ss_pred HHHHHHHHHH--HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHH--
Confidence 7777776421 111111111 55677788776666777544 44444544322111 1111112344444443
Q ss_pred cCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHH
Q 000196 783 NGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSL 862 (1874)
Q Consensus 783 ~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~L 862 (1874)
...++.|-.+++-++.++.-=.|- ... ..++. . -...++.++
T Consensus 340 -h~~~p~Vi~~~~a~i~~l~LR~pd----------hsa-------------~~ie~---------G-----~a~~avqAm 381 (461)
T KOG4199|consen 340 -HSDDPLVIQEVMAIISILCLRSPD----------HSA-------------KAIEA---------G-----AADLAVQAM 381 (461)
T ss_pred -cCCChHHHHHHHHHHHHHHhcCcc----------hHH-------------HHHhc---------c-----hHHHHHHHH
Confidence 334678888888888776421111 000 00000 0 012233332
Q ss_pred HHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHH
Q 000196 863 MRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYI 919 (1874)
Q Consensus 863 l~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~ 919 (1874)
- .-|.-...+..++..|.+|+..-...+.+.|..=+..++...+..++..+..+
T Consensus 382 k---ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~a 435 (461)
T KOG4199|consen 382 K---AHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAA 435 (461)
T ss_pred H---hCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHH
Confidence 1 13433345556777777777665666677777777777777776666544443
No 358
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=59.51 E-value=83 Score=45.66 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=92.9
Q ss_pred CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHH
Q 000196 185 STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAV 264 (1874)
Q Consensus 185 p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l 264 (1874)
+..+..|++.++...=..|+.+++.||+-+......++... +...+.+.+..++.-+..| .+.+ .-+|+.+|
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~f---ds~~qqeVv~~Lvthi~sg----~~~e-v~~aL~vL 497 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEF---DSYCQQEVVGALVTHIGSG----NSQE-VDAALDVL 497 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH------HHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHcCC----cHHH-HHHHHHHH
Confidence 44567899999998888999999999999999988887643 2222333344444444332 2234 46888899
Q ss_pred HHHHHcchhhhHHHHHHHHHHHHHHhhc-chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHH
Q 000196 265 GELLRNTGEFMMSRYREVAEIVLRYLEH-RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFI 343 (1874)
Q Consensus 265 ~~ll~~~~~~~~~~~~~i~~~ll~~~~~-~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~ 343 (1874)
..|....++.+.++ ...+..++.++++ ..+.||+. ..++..+|...... ....-+++.-.+-.+|.+...+..-+.
T Consensus 498 ~~L~~~~~~~l~~f-a~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~-~s~i~del~ivIRKQLss~~~~~K~~G 574 (1426)
T PF14631_consen 498 CELAEKNPSELQPF-ATFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSS-SSSIQDELHIVIRKQLSSSNPKYKRIG 574 (1426)
T ss_dssp HHHHHH-HHHHHHT-HHHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHH
T ss_pred HHHHhccHHHHHHH-HHHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCccc-chhhHHHHHHHHHHhhcCCcHHHHHHh
Confidence 88888666666654 3344455555554 34557755 66777777543321 222335666666778877776655555
Q ss_pred HHHHH
Q 000196 344 ALGEM 348 (1874)
Q Consensus 344 alg~l 348 (1874)
.||.+
T Consensus 575 IIGav 579 (1426)
T PF14631_consen 575 IIGAV 579 (1426)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 359
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=58.65 E-value=11 Score=29.83 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=21.7
Q ss_pred cHhhHHHHHHHhCCCCHHHHHHHHHHH
Q 000196 597 QADCLSAIFAALNDEDFDVREYAISVA 623 (1874)
Q Consensus 597 ~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1874)
.+.+...+...+.|+++.||++|++++
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 456677788888999999999998764
No 360
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=58.38 E-value=5.3e+02 Score=33.48 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhh---ccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc-
Q 000196 560 ELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFL---AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV- 634 (1874)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~f~~~L---~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v- 634 (1874)
+++++|++. ..||+..|..+++.++.. --.|.++= -....+..+...+.|.++.+|..+.+.|..+.-.+...+
T Consensus 419 dv~~plvql-l~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 419 DVAQPLVQL-LMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred hhHHHHHHH-hhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 344555554 389999999999888741 01222210 012357778888899999999999999999887665433
Q ss_pred chHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC
Q 000196 635 LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNC 673 (1874)
Q Consensus 635 ~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~ 673 (1874)
...++++-.+.+..+.++ +++...|++..++-++.-.+
T Consensus 498 ~~~~~ki~a~~i~~l~nd-~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLIND-PDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHhhHHHHHHHHhC-CCHHHHHHHHHHHHHhhcCc
Confidence 345677777778778787 88999999999888886443
No 361
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=58.24 E-value=84 Score=40.64 Aligned_cols=107 Identities=15% Similarity=0.222 Sum_probs=75.7
Q ss_pred cchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc
Q 000196 984 HLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ 1061 (1874)
Q Consensus 984 yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~ 1061 (1874)
|-..++|.+++.|+.. |+.....+|+-+..+...+. .+-..|+|.+...+.. .+..+|..++.++..|+..++
T Consensus 327 yq~~i~p~l~kLF~~~----Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~kL~ 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSP----DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPKLS 401 (690)
T ss_pred cccchhhhHHHHhcCc----chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhhhc
Confidence 7778899999999654 45666777887877777765 3446788988877754 368899999999999988765
Q ss_pred ccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000196 1062 VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095 (1874)
Q Consensus 1062 ~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l 1095 (1874)
-...-..++..+.+.-.+.+..+|-....||+-+
T Consensus 402 ~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 402 KRNLNGELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred hhhhcHHHHHHHHhhCccccCcccccceeeeccc
Confidence 4444455666666666555556776666665433
No 362
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.63 E-value=4.2e+02 Score=35.40 Aligned_cols=214 Identities=15% Similarity=0.141 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc-c
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV-L 635 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v-~ 635 (1874)
++..+-+|-. ++.+.+..+|.+++.....+ ...++.+...++++.++...+..++.-|..++.++|.+...-|..- .
T Consensus 61 iNs~llrLaD-aF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~ 139 (970)
T KOG1988|consen 61 INSQLLRLAD-AFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEFNQV 139 (970)
T ss_pred hhHHHHHHHH-HhccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccccch
Confidence 3444444433 46677888999999988642 3445555556788888877777789999999999999998777642 2
Q ss_pred hHHHHHHHHHHHHHhhCCCCh--HhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHH
Q 000196 636 PALRRHLIQLLTYLEQSSADN--KCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVG 713 (1874)
Q Consensus 636 p~l~~~l~~~l~~l~~~~~~~--~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~ 713 (1874)
+++ +..-..++.+. +..+.|+..++...+. |.-.|...+-..+.... .....+..++-.+.
T Consensus 140 hhl-------Ir~sl~S~helE~eaa~~Aaa~Faa~sk~-------FA~si~gkis~mIef~d---~~~~mkL~li~Vfs 202 (970)
T KOG1988|consen 140 HHL-------IRISLDSHHELEVEAAEFAAACFAAQSKD-------FACSICGKISDMIEFLD---LPVPMKLSLIPVFS 202 (970)
T ss_pred hHH-------HHHHhcCccchhhHHHHHHHhhhhhhhhh-------hHHHHHHHHHHHhhccc---CCCCcchhHhHHHH
Confidence 222 11111221111 2222233333332222 22222222222222211 12223333333333
Q ss_pred HHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHH-HHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHH
Q 000196 714 DLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVA-VSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR 792 (1874)
Q Consensus 714 ~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A-~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~ 792 (1874)
.|+.. ...+ +.......+.+.+. ....+-.| +.++..++...-+ ..|+....|++.++.+....+|.
T Consensus 203 ~M~c~--at~A---~ra~~l~m~lv~~t-ps~d~~v~fL~stT~Lasrs~~------ai~eq~d~l~q~~ked~~kivr~ 270 (970)
T KOG1988|consen 203 HMHCH--ATGA---SRAFGLCMSLVSGT-PSIDRVVAFLYSTTNLASRSLV------AISEQSDVLLQFLKEDERKIVRL 270 (970)
T ss_pred Hhcch--hhhh---HHHHHHHHHHhcCC-CcccceeeehhhhHHHHHHHHH------HhHHHHHHHHHhhcCCchhHHHH
Confidence 33321 1111 22233334444433 23334333 5666666655433 24788899999998777888998
Q ss_pred HHHHHHHHh
Q 000196 793 EVLKVLGIM 801 (1874)
Q Consensus 793 ~al~~lg~l 801 (1874)
.+++.+..+
T Consensus 271 ~vl~kl~~L 279 (970)
T KOG1988|consen 271 KVLRKLDFL 279 (970)
T ss_pred HHHHHHHHH
Confidence 888887654
No 363
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=57.60 E-value=79 Score=33.33 Aligned_cols=82 Identities=11% Similarity=-0.019 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHH
Q 000196 1692 ESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILR 1771 (1874)
Q Consensus 1692 ~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~R 1771 (1874)
...++..+.|+..+.++|.....|+.+|..+-.. .-...||.+|-+++.+.. +...-..-
T Consensus 49 G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~--------------g~~~~AI~aY~~A~~L~~------ddp~~~~~ 108 (157)
T PRK15363 49 KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ--------------KHWGEAIYAYGRAAQIKI------DAPQAPWA 108 (157)
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHhcCC------CCchHHHH
Confidence 5689999999999999999999999999875532 234589999999999863 23333444
Q ss_pred HHHHHHhcCCcHHHHHHHHhcc
Q 000196 1772 LLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1772 lLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
+=...|..|+.+.-.+.|+..+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555677777766655555544
No 364
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=57.03 E-value=1.6e+02 Score=34.37 Aligned_cols=109 Identities=15% Similarity=0.187 Sum_probs=79.0
Q ss_pred HHHHHHHHH-HHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1569 VETWLKFAS-LCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1569 ~~~wlk~a~-laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
...|...|- +-.+.|++..|...+..+....|+.. -.|.+.+-.++.++.+|+ ..+|+..++.+++...
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-------~a~~A~y~LG~~y~~~g~---~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-------YQPNANYWLGQLNYNKGK---KDDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-------chHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCC
Confidence 455665555 55778999999999988887666421 136788999999999995 6899999999886543
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
. ......+++++|.-..++ ...+.....|++.++.+|+..
T Consensus 212 ~-------------------s~~~~dAl~klg~~~~~~------g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 212 K-------------------SPKAADAMFKVGVIMQDK------GDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred C-------------------CcchhHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCcCCH
Confidence 1 123455566666665544 356889999999999888764
No 365
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=56.97 E-value=44 Score=35.71 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=58.2
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHH
Q 000196 609 NDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKAL 688 (1874)
Q Consensus 609 ~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~l 688 (1874)
-|+..++|.+|++++-.+...++..+- +..++.....++.+ +...+.-+..+|..++..+|..+.+.++.+++.+
T Consensus 37 vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D---~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l 111 (169)
T PF08623_consen 37 VDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD---EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPL 111 (169)
T ss_dssp EEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS----HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC---cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 377789999999999999888776553 34444444455532 4667888888999999999988888888877777
Q ss_pred HHHhh
Q 000196 689 VARLL 693 (1874)
Q Consensus 689 l~~l~ 693 (1874)
-..++
T Consensus 112 ~~~L~ 116 (169)
T PF08623_consen 112 RKTLS 116 (169)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 77665
No 366
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=56.40 E-value=1.8e+02 Score=36.24 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++..-|.--..+..+.|+...|...+.++...+|. .+-+.+-++..+-+.|+ ..+|+..|++.+.+.
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~----------~~~l~~~~a~all~~g~---~~eai~~L~~~~~~~ 404 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPN----------SPLLQLNLAQALLKGGK---PQEAIRILNRYLFND 404 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------ccHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcC
Confidence 55777778889999999999999999999887763 36788889999988884 579999999987654
Q ss_pred c
Q 000196 1647 S 1647 (1874)
Q Consensus 1647 ~ 1647 (1874)
.
T Consensus 405 p 405 (484)
T COG4783 405 P 405 (484)
T ss_pred C
Confidence 3
No 367
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=56.15 E-value=16 Score=32.07 Aligned_cols=52 Identities=27% Similarity=0.288 Sum_probs=43.9
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1580 RKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
.++|+++.|...+.++...+|. .+.+.+..++++...|+ ..+|...++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~la~~~~~~g~---~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD----------NPEARLLLAQCYLKQGQ---YDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT----------SHHHHHHHHHHHHHTT----HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 5789999999999999887663 57899999999999994 7899999887654
No 368
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=55.50 E-value=30 Score=33.70 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=51.5
Q ss_pred cCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc-cccchHHHHHHHHHHhhcc
Q 000196 631 PAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAPIHKALVARLLEG 695 (1874)
Q Consensus 631 p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~il~~ll~~l~~~ 695 (1874)
|..+.|+++.++..+...+.+- .+++|..|...|..+.+.+|+. +..+...+++.++..+...
T Consensus 2 ~~~l~p~~~~l~~~i~sAMTHi--~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 2 PELLSPFFPLLMLYISSAMTHI--SPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHhHHHHHHHHHHHHHHhC--CHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3445688887777777778776 6889999999999999999988 7888888888888887754
No 369
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=55.48 E-value=67 Score=35.30 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=49.9
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhcc-HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQ-ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~-~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1874)
..+++..+|..+++-+...- -.-|.+ .+.++.++.+..|++..+|..|..++..+.+.+|..+...+
T Consensus 17 ~~~~~~~vr~~Al~~l~~il--~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~ 84 (187)
T PF12830_consen 17 CLSSDDSVRLAALQVLELIL--RQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY 84 (187)
T ss_pred HhCCCHHHHHHHHHHHHHHH--hcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35788999999988774100 011223 35789999999999999999999999999999987654433
No 370
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=55.36 E-value=25 Score=32.00 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=33.3
Q ss_pred HHHHhcCHHHHHHHHHHHHhcc---CCCc-hhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1363 WYEKLQRWDDALKAYTNKASQA---SNPH-IVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~---~~~~-~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
-|..+|+|++|+.+|++.++-. .+.. .......++-.|+..+|+++.-..+.+
T Consensus 14 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 14 VYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4788999999999999987531 1111 112334566677777777776655544
No 371
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=54.82 E-value=1.3e+02 Score=32.20 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|...+..++..|+++.|...+.++....+.. ...+.+....+.++-..|+ ..+|+..++..+.....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-------~~~~~~~~~lg~~~~~~g~---~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-------YDRSYILYNIGLIHTSNGE---HTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-------hhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCcC
Confidence 7789999999999999999999999987664320 0123455666677777784 68899988876542110
Q ss_pred CCccccccccccccccCcchhhHHHHHH-------HHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYL-------KLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~-------~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
.......++.++. .+|++.... ...++....|+++...+|...
T Consensus 105 ---------------~~~~~~~la~i~~~~~~~~~~~g~~~~A~------~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 105 ---------------LPQALNNMAVICHYRGEQAIEQGDSEIAE------AWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred ---------------cHHHHHHHHHHHHHhhHHHHHcccHHHHH------HHHHHHHHHHHHHHHhCcccH
Confidence 0111234566666 444544332 134566667777777777544
No 372
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.70 E-value=2.8e+02 Score=31.63 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=74.5
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccc---cc---
Q 000196 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQ---SA--- 1655 (1874)
Q Consensus 1582 ~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~---~~--- 1655 (1874)
.|+++-|..+..+++.-+|+ +.....-..-.+=++|. +.+||+.|.+.++.|-.+...= ..
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt----------~~v~~KRKlAilka~GK---~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPT----------DTVIRKRKLAILKAQGK---NLEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred hhchhhHHHHHHHHhccCcc----------hhHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 46788888888888765543 11222234445556784 5789999998887665332100 00
Q ss_pred cccccccc------cCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhh
Q 000196 1656 ASTSLTTA------TSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729 (1874)
Q Consensus 1656 ~~~~~~~~------~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~ 1729 (1874)
+...|.+. ..-..+..-.++..+|+-+.-.. + .++..-..++|..|+++++++-++|+..-+.|..+.+..
T Consensus 166 ~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g-g--~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~s 242 (289)
T KOG3060|consen 166 SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG-G--AENLELARKYYERALKLNPKNLRALFGIYLCGSALAQIS 242 (289)
T ss_pred hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-h--HHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHh
Confidence 00000000 00001112233444444333221 1 345677789999999999999999998888887776543
No 373
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=54.63 E-value=2.9e+02 Score=35.54 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 730 LMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 730 llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
.+..+-..|+-. ++..|.+.=.++|-++-+ +|.. .+++.|.++... .+.++...++-.+|.+||
T Consensus 641 ~lR~f~h~l~yg-e~~iRravPLal~llsvS-----NPq~---~vlDtLsk~shd-~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 641 VLRHFGHLLHYG-EPHIRRAVPLALGLLSVS-----NPQV---NVLDTLSKFSHD-GDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHhhhccC-----CCcc---hHHHHHHHhccC-cchHHHHHHHHHhccccC
Confidence 344455555544 456777777788876544 4443 578888887654 467899999999999996
No 374
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=54.09 E-value=34 Score=30.51 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=35.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhh
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKE 1416 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1874)
.|-+.++|++|++++++.+...|+. ......+=.|+..+|+|+.-....+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDD---PELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCccc---chhhHHHHHHHHHhccHHHHHHHHHH
Confidence 4677888999999998887654432 34556677888888888655544443
No 375
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.54 E-value=49 Score=35.47 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000196 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlL 1773 (1874)
+++.+..|++|+.++|+...+...|+..+...-..... ......|...|..+|-++....+ ....+...+++-
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d---~~~A~~~F~kA~~~FqkAv~~~P----~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPD---TAEAEEYFEKATEYFQKAVDEDP----NNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-T----T-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHhcCC----CcHHHHHHHHHH
Confidence 67888999999999999999999999988775442211 12345788999999999998753 123454444443
No 376
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=53.51 E-value=1.2e+02 Score=31.59 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~ 1641 (1874)
...++..++.+-..|.++.|...+..+....++. . ..+...+-.++++..+|+ ..+|+..|+.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~---~----l~~~a~l~LA~~~~~~~~---~d~Al~~L~~ 110 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP---E----LKPLARLRLARILLQQGQ---YDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH---H----HHHHHHHHHHHHHHHcCC---HHHHHHHHHh
Confidence 5678889999999999999999999987643211 1 124566677888888884 6899998865
No 377
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=53.12 E-value=16 Score=26.57 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=20.8
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCC
Q 000196 1361 ESWYEKLQRWDDALKAYTNKASQASN 1386 (1874)
Q Consensus 1361 ~~~~E~lg~W~~Al~~y~~~~~~~~~ 1386 (1874)
+..|.+.|+|++|...|++.+...|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34578899999999999998876543
No 378
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=52.86 E-value=54 Score=31.95 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=55.5
Q ss_pred hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC
Q 000196 273 EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP 335 (1874)
Q Consensus 273 ~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~ 335 (1874)
+.+.|+++.++..+.....|-.+.||..++..+.-+-++.|+..+..++.++++..+..+...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 457788888888888889999999999999999999999998867778899999999998754
No 379
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=52.60 E-value=19 Score=32.44 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 746 KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+...|++++|.+...... -++.+..++++.++++..+.+...+|-.++-++|.++
T Consensus 3 ~lKaaLWaighIgss~~G--~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis 57 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLG--IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS 57 (73)
T ss_pred HHHHHHHHHHhHhcChHH--HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 455799999999865332 1333335799999999988888999999999999886
No 380
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=52.26 E-value=30 Score=25.30 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=24.8
Q ss_pred HHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1672 ARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1672 a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
|+.+..+|...... ...++.+++|++|++++|++
T Consensus 1 a~~~~~lg~~~~~~------~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQL------GNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHT------T-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHCcCC
Confidence 45566667666654 35688999999999999863
No 381
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=52.12 E-value=1.4e+02 Score=37.20 Aligned_cols=79 Identities=14% Similarity=0.349 Sum_probs=56.9
Q ss_pred HHhhhccCCHHHHHHHHHHHHhhcCC-cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHH
Q 000196 1540 ERIQGTKRNVEVWQALLAVRALVLPP-TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA 1618 (1874)
Q Consensus 1540 ~Rl~~~~~~~~~w~~iL~~R~~vl~~-~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e 1618 (1874)
.|-...-.|.+.-.+|.-+=+..+.. ..|...|+.+++.|+|.+.+..-.+...+++.+.|+ .|.+=+-
T Consensus 75 ~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~----------~~dLWI~ 144 (568)
T KOG2396|consen 75 KRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN----------NPDLWIY 144 (568)
T ss_pred hhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC----------CchhHHh
Confidence 44444556777778887665555543 458999999999999999888888888888887764 2333344
Q ss_pred HHHHHHhcCC
Q 000196 1619 YLKYQWSLGE 1628 (1874)
Q Consensus 1619 ~~k~lw~~g~ 1628 (1874)
-|++.+..+.
T Consensus 145 aA~wefe~n~ 154 (568)
T KOG2396|consen 145 AAKWEFEINL 154 (568)
T ss_pred hhhhHHhhcc
Confidence 5677777764
No 382
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=52.09 E-value=20 Score=26.28 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=19.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccC
Q 000196 1361 ESWYEKLQRWDDALKAYTNKASQAS 1385 (1874)
Q Consensus 1361 ~~~~E~lg~W~~Al~~y~~~~~~~~ 1385 (1874)
+..|.+.|+|++|..+|++.++-.+
T Consensus 8 g~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 8 GQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3468999999999999999886543
No 383
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=51.98 E-value=1.8e+02 Score=30.34 Aligned_cols=100 Identities=10% Similarity=0.117 Sum_probs=65.3
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC-CCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHH-H
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQ-L 645 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~-~ 645 (1874)
..++|+..-..+++.++... -. ..+.++.|-.-++ ..++.|...|+.++..++++++..+...+ +.++.+ +
T Consensus 14 l~~~dw~~ileicD~In~~~-~~----~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L 88 (141)
T cd03565 14 LQSEDWGLNMEICDIINETE-DG----PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVL 88 (141)
T ss_pred CCCcCHHHHHHHHHHHhCCC-Cc----HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHH
Confidence 45678888888888886321 11 2457788887776 46888999999999999999987654333 344444 3
Q ss_pred HHHHhhCC-CChHhHHHHHHHHHHHHHhCc
Q 000196 646 LTYLEQSS-ADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 646 l~~l~~~~-~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
+.-+.... .....+...+.++..-....+
T Consensus 89 ~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 89 VKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 33332210 234667777888877776654
No 384
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=51.70 E-value=44 Score=29.79 Aligned_cols=57 Identities=19% Similarity=0.314 Sum_probs=48.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1576 ASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1576 a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
.++..++++++.|..++.++...+|. .+...+.++.++...|+ ..+|+..++..+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~~a~~~~~~g~---~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD----------DPELWLQRARCLFQLGR---YEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc----------cchhhHHHHHHHHHhcc---HHHHHHHHHHHHHH
Confidence 46788999999999999999988663 46788899999999995 68999999987753
No 385
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=51.52 E-value=91 Score=28.28 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=40.4
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCCh
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEW 1443 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~W 1443 (1874)
+...|+|++|...+++.+...++. ......+-.|+...|+|+.-....+..... .+.. .......+.+.+..|++
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELDPDN---ADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDN-AKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-hhHHHHHHHHHHHHHhH
Confidence 445677777777777666543322 234455666666777776555444332111 0110 01222334455556666
Q ss_pred hhHHHHH
Q 000196 1444 DQMAEYV 1450 (1874)
Q Consensus 1444 d~~~~~~ 1450 (1874)
+.-.++.
T Consensus 85 ~~a~~~~ 91 (100)
T cd00189 85 EEALEAY 91 (100)
T ss_pred HHHHHHH
Confidence 6554443
No 386
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=51.50 E-value=4.5e+02 Score=30.56 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhh--------CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC----ccchhchH
Q 000196 126 EILVLASKVLGHLARA--------GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS----TVFNVHVA 193 (1874)
Q Consensus 126 ~v~~~aa~~lg~l~~~--------~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p----~~~~~~l~ 193 (1874)
..++.++..|+.++.. .+....+.+...-...+.+|-+-+..+.=.++...+..+++.+- ..+.....
T Consensus 62 r~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~ 141 (255)
T PF10350_consen 62 RSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPE 141 (255)
T ss_pred HHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 4577788888888742 23456777788888888888644333333444455556665432 23344445
Q ss_pred HHHHHHHHhhcCC-ch---hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCC-------hhHHHHHHH
Q 000196 194 EFVDAIWVALRDP-TL---AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAP-------VHSIHGSLL 262 (1874)
Q Consensus 194 ~il~~i~~~l~D~-~~---~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~-------~~~~~~al~ 262 (1874)
..+..++..+..+ .. ..|+.|.-.+-- ..++.. ++......+...+..+++-...+.. ...+--|+-
T Consensus 142 ~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i-~aiL~a-e~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlN 219 (255)
T PF10350_consen 142 EWLDELLEAIESKGQQKLSITRRSAGLPFLI-LAILSA-EPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALN 219 (255)
T ss_pred HHHHHHHHHHhcccccccccccccCcHHHHH-HHHHhc-CCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHH
Confidence 5666677777666 22 568777654432 233332 2221114444444444432222110 123444566
Q ss_pred HHHHHHH--cchhhhHHHHHHHHHHHHHHhh
Q 000196 263 AVGELLR--NTGEFMMSRYREVAEIVLRYLE 291 (1874)
Q Consensus 263 ~l~~ll~--~~~~~~~~~~~~i~~~ll~~~~ 291 (1874)
+|..+.+ .-++.+.+|+.+.+..-+..+.
T Consensus 220 iLr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 220 ILRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 7777776 3346677777776655554443
No 387
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=50.98 E-value=6.4e+02 Score=32.18 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=99.7
Q ss_pred cHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcccc
Q 000196 22 SLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~ 101 (1874)
+-..+..||+..+......++.-.+|-.. ...+.|...+..+++.|..+-+++.+..|.-. -+..++...-
T Consensus 9 ~~~s~~~if~k~Q~s~aGhrk~~a~l~~~-------~t~~~f~~~flr~vn~IL~~Kk~~si~dRil~--fl~~f~~Y~~ 79 (885)
T COG5218 9 SLESMQLIFNKIQQSSAGHRKSLAELMEM-------LTAHEFSEEFLRVVNTILACKKNPSIPDRILS--FLKRFFEYDM 79 (885)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHH-------HHHHhhHHHHHHHHHHhhccccCCCcHHHHHH--HHHHHHHhcC
Confidence 34557778877765432222221122222 23445655555666666666677777777532 3334444211
Q ss_pred -Ccc--hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHH
Q 000196 102 -GEN--ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILK 178 (1874)
Q Consensus 102 -~~~--~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~ 178 (1874)
.+. ...+..+.-++.+-.. +.|..|+...++.+.+++..-+..-..+...++..+.+-+- ++....|..|+.+|.
T Consensus 80 ~~dpeg~~~V~~~~~h~lRg~e-skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~ 157 (885)
T COG5218 80 PDDPEGEELVAGTFYHLLRGTE-SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF-DREKAVRREAVKVLC 157 (885)
T ss_pred CCChhhhHHHHHHHHHHHhccc-CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 111 2233444444444443 57899999999999999876443333344444444444332 355578889999988
Q ss_pred HHHhhcCccchhchHHHHHHHHHhh-cCCchhHHHHHHHHH
Q 000196 179 EMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEAL 218 (1874)
Q Consensus 179 ~la~~~p~~~~~~l~~il~~i~~~l-~D~~~~VR~aA~~al 218 (1874)
.+-+-...- .. .+...+...+ .||+..||.+|.--+
T Consensus 158 ~~Qe~~~ne-en---~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 158 YYQEMELNE-EN---RIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHhccCCh-HH---HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 876543221 11 1222222223 599999999987544
No 388
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=50.63 E-value=31 Score=25.41 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=22.8
Q ss_pred HHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000196 1672 ARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1874)
Q Consensus 1672 a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1874)
|+++..+|.-...+ ...++.+.+|++|++++|+
T Consensus 1 a~~~~~~g~~~~~~------~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQL------GDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHT------T-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHh------CCchHHHHHHHHHHHHCcC
Confidence 34555555555443 3468899999999999986
No 389
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=50.38 E-value=21 Score=26.30 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccC
Q 000196 1361 ESWYEKLQRWDDALKAYTNKASQAS 1385 (1874)
Q Consensus 1361 ~~~~E~lg~W~~Al~~y~~~~~~~~ 1385 (1874)
+..|.++|+|++|+.+|++.++-.+
T Consensus 8 g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 8 GNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3458899999999999999886543
No 390
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=50.02 E-value=2.3e+02 Score=31.49 Aligned_cols=59 Identities=19% Similarity=0.254 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh
Q 000196 875 HQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQH 933 (1874)
Q Consensus 875 ~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~ 933 (1874)
-..+...+..+|..+|..+.|++..++..+-..-.+.+-..+..+-..+|..+..+|+.
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe 75 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPE 75 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHH
Confidence 34678888899999999888888888877766544444467778778888888888754
No 391
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=49.49 E-value=70 Score=34.47 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=66.8
Q ss_pred HhHHHHHHHHHHHHHhCcccccc------ch----HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhc
Q 000196 657 KCREESAKLLGCLIRNCERLIRP------YI----APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQY 726 (1874)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~~~p------y~----~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~ 726 (1874)
+.|.-+.+++-.+.+..+..+.. +. +.+.+.+++.+... ++.+...++..+..+....+..++.-
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~-----~~~i~~~slri~~~l~~~~~~~Lk~e 111 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSS-----DFPIFSRSLRIFLTLLSRFRSHLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888888777766652 22 23444444444432 46677777888888888777778888
Q ss_pred HHhHHHHHHHH-HhcCc-chhhHHHHHHHHHHHHhh
Q 000196 727 ISELMPLIVEA-LLDGA-AVTKREVAVSTLGQVVQS 760 (1874)
Q Consensus 727 ~~~llp~l~~~-l~d~~-~~~~r~~A~~~Lg~l~~~ 760 (1874)
+..+++.++.. +.... +...|..++.++..++..
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 88888888884 43222 346888899999998864
No 392
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=49.45 E-value=1.6e+02 Score=29.65 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=45.1
Q ss_pred HHHHHhhcCChHHHhHHHHHHhch-h--------hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000196 1331 LIHINNQLHQHEAAVGILTYAQKE-L--------DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1874)
Q Consensus 1331 L~~iy~~L~~~D~~~Gi~~~~~~~-~--------~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1874)
+...|-.+|+++.+..+.+.+-.. + -++ ....+..+|+.++|+...++...+.++.+.......-.--||
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~-lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQ-LASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344566666666666665543211 0 011 233578899999999999888765444211011111222377
Q ss_pred HHhhCHHHHHH
Q 000196 1402 AALARWEELNN 1412 (1874)
Q Consensus 1402 ~~Lg~w~~l~~ 1412 (1874)
.++|++++-..
T Consensus 86 ~~~gr~~eAl~ 96 (120)
T PF12688_consen 86 YNLGRPKEALE 96 (120)
T ss_pred HHCCCHHHHHH
Confidence 88888865443
No 393
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=48.63 E-value=2.8e+02 Score=29.87 Aligned_cols=139 Identities=13% Similarity=0.130 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHhhcCC-cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc
Q 000196 1548 NVEVWQALLAVRALVLPP-TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL 1626 (1874)
Q Consensus 1548 ~~~~w~~iL~~R~~vl~~-~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~ 1626 (1874)
+|..|-++. .+-.-+++ ......+...+....+.|+++.|...+.++.+..+... ..+.+.+..+..+...
T Consensus 14 ~~~~~~~~~-~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~la~~~~~~ 85 (172)
T PRK02603 14 SFTVMADLI-LKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-------DRSYILYNMGIIYASN 85 (172)
T ss_pred HHHHHHHHH-HHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHHHHc
Confidence 344666665 11111111 12366788999999999999999999998876543210 1235666777777788
Q ss_pred CCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCC-CCCCCHHHHHHHHHHHH
Q 000196 1627 GEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPG-LDDESIPEIIAAYRNAT 1705 (1874)
Q Consensus 1627 g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~-~~~~~~~~i~~~y~~a~ 1705 (1874)
|+ ..+|+..+++.+...... ...-..++.++..+|+...+.... ......+...+.|+++.
T Consensus 86 g~---~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 86 GE---HDKALEYYHQALELNPKQ---------------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred CC---HHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 84 688999888766431110 011234677888887765433100 00011344455555556
Q ss_pred hhcccch
Q 000196 1706 QCATKWG 1712 (1874)
Q Consensus 1706 ~~~~~~~ 1712 (1874)
..+|+.+
T Consensus 148 ~~~p~~~ 154 (172)
T PRK02603 148 RLAPNNY 154 (172)
T ss_pred hhCchhH
Confidence 6666554
No 394
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=48.38 E-value=66 Score=30.63 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=45.0
Q ss_pred CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLA 716 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La 716 (1874)
+....|+.|+.+|+.+++..+......-+.|+..+.+.+.|+. ......-+++.++..|.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~---~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPK---KPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHHH
Confidence 4578899999999999998776554455578899999998863 34555667777776663
No 395
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=47.29 E-value=2.1e+02 Score=36.17 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=85.4
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccc
Q 000196 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLT 1661 (1874)
Q Consensus 1582 ~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~ 1661 (1874)
.+++.+|.+...++..+.|. .|-|..|..-+.+..++ ..+|...++.-+....+..+... ..
T Consensus 393 t~n~kLAe~Ff~~A~ai~P~----------Dplv~~Elgvvay~~~~---y~~A~~~f~~~l~~ik~~~~e~~-~w---- 454 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIAPS----------DPLVLHELGVVAYTYEE---YPEALKYFQKALEVIKSVLNEKI-FW---- 454 (611)
T ss_pred hccHHHHHHHHHHHHhcCCC----------cchhhhhhhheeehHhh---hHHHHHHHHHHHHHhhhcccccc-ch----
Confidence 46788899999998887663 46777777777776664 67899988876533221110000 00
Q ss_pred cccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhH
Q 000196 1662 TATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQF 1741 (1874)
Q Consensus 1662 ~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~ 1741 (1874)
..-...++-.+++++++ ++.+..|++|+.+.|+...++-..|..+.- . .-
T Consensus 455 ---~p~~~NLGH~~Rkl~~~-------------~eAI~~~q~aL~l~~k~~~~~asig~iy~l-l-------------gn 504 (611)
T KOG1173|consen 455 ---EPTLNNLGHAYRKLNKY-------------EEAIDYYQKALLLSPKDASTHASIGYIYHL-L-------------GN 504 (611)
T ss_pred ---hHHHHhHHHHHHHHhhH-------------HHHHHHHHHHHHcCCCchhHHHHHHHHHHH-h-------------cC
Confidence 00123456667777665 578899999999999998888888865432 1 13
Q ss_pred HHHHHHHHHHHHhhc
Q 000196 1742 VVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1742 ~~~ai~~f~~si~~~ 1756 (1874)
+-.||++|=+|+.+.
T Consensus 505 ld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 505 LDKAIDHFHKALALK 519 (611)
T ss_pred hHHHHHHHHHHHhcC
Confidence 448999999999885
No 396
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=47.08 E-value=32 Score=26.84 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.9
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhh
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLS 627 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~ 627 (1874)
..++.|..++++++.+|++.|..+|+.|+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46888999999999999999999999876
No 397
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=46.59 E-value=63 Score=30.80 Aligned_cols=59 Identities=24% Similarity=0.235 Sum_probs=45.9
Q ss_pred cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhc
Q 000196 742 AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIMG 802 (1874)
Q Consensus 742 ~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~-~~~vr~~al~~lg~lg 802 (1874)
+++..|+-|...|+.++...+.. .| .-.|.++..+.+.+.++. +...+.-|+..|..+|
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~-~~-~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSS-YP-TLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccc-cc-hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999988753 11 224788888888886543 6678888888888887
No 398
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=46.48 E-value=4e+02 Score=29.26 Aligned_cols=70 Identities=29% Similarity=0.318 Sum_probs=51.5
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcC---CcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEK---NPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL 676 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~---~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~ 676 (1874)
+++-+..+.-+++..||..|+++++.+.+. ||....| .+-.|+.+ +++..|..|..++.++.++.+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp--------~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVP--------TLIALETS-PNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHh--------HhhhhhCC-CChHHHHHHHHHHHHHHHHhHHH
Confidence 455556666678899999999999887763 4443333 34446677 78889999999999999887765
Q ss_pred cc
Q 000196 677 IR 678 (1874)
Q Consensus 677 ~~ 678 (1874)
+.
T Consensus 80 v~ 81 (187)
T PF12830_consen 80 VE 81 (187)
T ss_pred HH
Confidence 54
No 399
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=45.87 E-value=6.4e+02 Score=30.76 Aligned_cols=213 Identities=18% Similarity=0.254 Sum_probs=104.5
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCCh
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEW 1443 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~W 1443 (1874)
..+.|+.+.|=.+..+..+..+++. .-....+-+-+.+-|+++.-.......-.. .+ -..++..++.+++.++|+|
T Consensus 128 A~qrgd~~~an~yL~eaae~~~~~~--l~v~ltrarlll~~~d~~aA~~~v~~ll~~-~p-r~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 128 AQQRGDEDRANRYLAEAAELAGDDT--LAVELTRARLLLNRRDYPAARENVDQLLEM-TP-RHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HHhcccHHHHHHHHHHHhccCCCch--HHHHHHHHHHHHhCCCchhHHHHHHHHHHh-Cc-CChHHHHHHHHHHHHhccH
Confidence 4556666666555555443322221 223344555566666664443333322111 00 1134556899999999999
Q ss_pred hhHHHHHhhcCCCC---cchh--------hccccccccCCCCCch--HHHHHHHHHHhcC--hhhhHHHHHHHHHHhHhh
Q 000196 1444 DQMAEYVSRLDDGD---ESKL--------RGLGNTAANGDGSSNG--TFFRAVLLVRRGK--VLESYERAYSNMVRVQQL 1508 (1874)
Q Consensus 1444 d~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~--~f~~a~~~i~~~~--~~esy~ray~~l~~lq~L 1508 (1874)
+.+..++..+.+.. .... .++.+-.... ...++ .+|+.+-.-.|+. +.-+|. ..+.++.-=
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~-~~~~gL~~~W~~~pr~lr~~p~l~~~~a---~~li~l~~~ 279 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD-NGSEGLKTWWKNQPRKLRNDPELVVAYA---ERLIRLGDH 279 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHhccHHhhcChhHHHHHH---HHHHHcCCh
Confidence 99999998875421 0000 0000000000 00011 2222221111110 111111 122222222
Q ss_pred hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhh-----ccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcC
Q 000196 1509 SELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQG-----TKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSG 1583 (1874)
Q Consensus 1509 ~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~-----~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g 1583 (1874)
.|-++++ .+.+.+.|+.||.. ...|.+..++.+.-+---. .++...|.-+-.+|+|++
T Consensus 280 ~~A~~~i---------------~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tLG~L~~k~~ 342 (400)
T COG3071 280 DEAQEII---------------EDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTLGRLALKNK 342 (400)
T ss_pred HHHHHHH---------------HHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhh
Confidence 3333333 22455667666531 1244555555444443222 244578889999999999
Q ss_pred ChhHHHHHHHHHhcCCCC
Q 000196 1584 RISQARSTLVKLLQYDPE 1601 (1874)
Q Consensus 1584 ~~~~a~~~L~~l~~~~~~ 1601 (1874)
.|..|..+|..+..+.++
T Consensus 343 ~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 343 LWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999988877654
No 400
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=45.77 E-value=3.7e+02 Score=29.94 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=97.2
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1566 ~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
..+.+.+-+-+..+-..|++..|...+..+....|... -.+...+..+...+..|+ ..+|+..++.++..
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-------~a~~A~l~la~a~y~~~~---y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-------YAPQAQLMLAYAYYKQGD---YEEAIAAYERFIKL 71 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-------THHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 34466777888999999999999999999886555321 236778888888888885 68999999999876
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhh-----hHhhcCCCCCCCCHHHHHHHHHHHHhhcccch---HHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGS-----WKRALPPGLDDESIPEIIAAYRNATQCATKWG---KAWHS 1717 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~-----w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~---k~w~~ 1717 (1874)
.... +....+++++|. |...+....+.....+.+..|+..++-.|+.. ++=..
T Consensus 72 yP~~-------------------~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 72 YPNS-------------------PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp -TT--------------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred CCCC-------------------cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 5321 112333333333 21110001123345677888888888888653 22222
Q ss_pred H-------HHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcH
Q 000196 1718 W-------ALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATE 1783 (1874)
Q Consensus 1718 w-------A~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~ 1783 (1874)
. |..-..+...+-+++ .| ..|+.-|-..|..- .++...-+.+.++.......|...
T Consensus 133 l~~l~~~la~~e~~ia~~Y~~~~------~y-~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 133 LAELRNRLAEHELYIARFYYKRG------KY-KAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-------H-HHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc------cH-HHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChH
Confidence 2 222222222232222 22 23444443333321 234455566777777777777653
No 401
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=45.68 E-value=76 Score=42.37 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=62.1
Q ss_pred hHhHHHHHHHHHHHHHhCccccccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHH
Q 000196 656 NKCREESAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLI 734 (1874)
Q Consensus 656 ~~~r~~a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l 734 (1874)
+..|-.++.+|+.+++.-+.-+...+. +++..|+..+.-+ .+..+...++.+|-.|....+..+.+|++.++.++
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D----~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If 157 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFD----TSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIF 157 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhc----ccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 467889999999999987755443333 5666777777653 36777788888988888888889999999999999
Q ss_pred HHHH
Q 000196 735 VEAL 738 (1874)
Q Consensus 735 ~~~l 738 (1874)
...+
T Consensus 158 ~Rl~ 161 (668)
T PF04388_consen 158 GRLL 161 (668)
T ss_pred HHHH
Confidence 8877
No 402
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=45.54 E-value=4.1e+02 Score=31.19 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcc
Q 000196 1551 VWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDL 1630 (1874)
Q Consensus 1551 ~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~ 1630 (1874)
.=.-+...|..+=...+|.+.|.-+..+....|++..|..+..++.++.++ .|.+...++..+..+.++.
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~----------n~~~~~g~aeaL~~~a~~~ 207 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD----------NPEILLGLAEALYYQAGQQ 207 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHhcCCc
Confidence 444455566655444477999999999999999999999999999988653 5888899999998887654
Q ss_pred hHHHHHHHHHHHH
Q 000196 1631 KRKEAFARLQTLA 1643 (1874)
Q Consensus 1631 ~~~~Al~~l~~~~ 1643 (1874)
-..++-..|++.+
T Consensus 208 ~ta~a~~ll~~al 220 (287)
T COG4235 208 MTAKARALLRQAL 220 (287)
T ss_pred ccHHHHHHHHHHH
Confidence 4456666666654
No 403
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=45.52 E-value=3e+02 Score=28.43 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHhhcch----hHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHH
Q 000196 275 MMSRYREVAEIVLRYLEHRD----RLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIAL 345 (1874)
Q Consensus 275 ~~~~~~~i~~~ll~~~~~~~----~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~al 345 (1874)
+......+++.+...++... ..+...++.++.+...+.+....-. ..+++.+...|..+..+..|.+||
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCCHHHHHHHHHhC
Confidence 33444555555555554322 7788888888888877766443221 358888889998888888888876
No 404
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.36 E-value=6.9e+02 Score=30.96 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh--hhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhch-hhhhh
Q 000196 282 VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--DRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALD-GELFH 358 (1874)
Q Consensus 282 i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~--~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~-~~~~p 358 (1874)
+++.++++.....+..+++++.++=.++.-++ ...+. ..++|++...|.+.+.++.|+..+=.+...=. +.|..
T Consensus 346 iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~---~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~Mfa 422 (791)
T KOG1222|consen 346 IVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN---GGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFA 422 (791)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh---ccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHH
Confidence 56667777778888888888887777764332 12222 45678888888887777777777666532211 13445
Q ss_pred hhHHHHHHHHHhh
Q 000196 359 YLPTITSHLREAI 371 (1874)
Q Consensus 359 ~l~~i~~~l~~~L 371 (1874)
|-+.|-...+..+
T Consensus 423 yTdci~~lmk~v~ 435 (791)
T KOG1222|consen 423 YTDCIKLLMKDVL 435 (791)
T ss_pred HHHHHHHHHHHHH
Confidence 5544433333333
No 405
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=45.35 E-value=1.8e+02 Score=30.82 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCC-cchhHHHHHHHHHHHHhhcCccchhchHH--HHHHHHH
Q 000196 125 REILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDR-VEYRRFAAVLILKEMAENASTVFNVHVAE--FVDAIWV 201 (1874)
Q Consensus 125 ~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~-~~~~r~aA~~~l~~la~~~p~~~~~~l~~--il~~i~~ 201 (1874)
.+....+-.++-.|..+|-..|..+-+..++++..++.... +.+.-+.|+-+|..++.++|.. ++.+.+ -++.+..
T Consensus 31 ~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~l-y~~V~~evt~~~Li~ 109 (160)
T PF11841_consen 31 GEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKL-YQLVEQEVTLESLIR 109 (160)
T ss_pred HHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHH-HHHHhccCCHHHHHH
Confidence 36667777888888888644565555667788888875332 4556678899999999987764 333332 2466888
Q ss_pred hhcCCchhHHHHHHHHHHHHH
Q 000196 202 ALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~ 222 (1874)
.|.++++.++.-|..-+.+++
T Consensus 110 hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 110 HLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 888899999877776555543
No 406
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=45.06 E-value=1.1e+03 Score=33.34 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|...+.++++.|+++.|...+.++...+|. .+.+....+-.+...|+ ..+|+..++..+.....
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd----------~~~a~~nLG~aL~~~G~---~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPN----------NSNYQAALGYALWDSGD---IAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC
Confidence 788999999999999999999999999988763 46777778888888885 68999999887653211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1874)
.+.++..+|.-.... ..+++....|++|++++|+...+-..++.
T Consensus 676 ----------------------~~~a~~nLA~al~~l------Gd~~eA~~~l~~Al~l~P~~a~i~~~~g~ 719 (987)
T PRK09782 676 ----------------------DPALIRQLAYVNQRL------DDMAATQHYARLVIDDIDNQALITPLTPE 719 (987)
T ss_pred ----------------------CHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCCchhhhhhhH
Confidence 122333344433332 34678899999999999988765555543
No 407
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=44.70 E-value=4.7e+02 Score=31.93 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=87.8
Q ss_pred HHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCC---------c-----chhHHHHH
Q 000196 856 TVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD---------D-----YLKDYITW 921 (1874)
Q Consensus 856 ~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~---------~-----~~~~~~~~ 921 (1874)
+..++.++.+|+.+..-+....+..-+...+.+-..-+..-++++...+.+.+.+.. . ++...++.
T Consensus 140 s~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~ 219 (356)
T PF03542_consen 140 SEWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFP 219 (356)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHH
Confidence 466788888898777666666676666666654222111225666666666554321 1 13445556
Q ss_pred HHHHHHHHHHHhHH-HhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhccccc
Q 000196 922 KLGTLVSIVRQHIR-KYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAE 1000 (1874)
Q Consensus 922 ~l~~lv~~~~~~i~-~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~ 1000 (1874)
.|+.++.- ..++. .--++|+..+...+.... ..+|+.++.-.+.-+++.+.++++.++-.|-+....
T Consensus 220 ~Ls~LisY-h~~~~k~~qd~iV~~l~~GL~s~~---------a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt-- 287 (356)
T PF03542_consen 220 VLSALISY-HSHFSKQEQDEIVRALESGLGSKT---------AKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTT-- 287 (356)
T ss_pred HHHHHHHH-HHhcCHhHHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc--
Confidence 66665532 23333 335677777776654321 126788888888888999999888888766554422
Q ss_pred ccCchhhHHHHHHHHHHHh
Q 000196 1001 RCNDYTYVLDILHTLEVFG 1019 (1874)
Q Consensus 1001 ~~~~~~~~~~il~~l~~~g 1019 (1874)
...+..+|+.+..++
T Consensus 288 ----~~~Ai~ILEFLs~L~ 302 (356)
T PF03542_consen 288 ----PNMAIHILEFLSSLS 302 (356)
T ss_pred ----hhhHHHHHHHHHHHh
Confidence 224556777665544
No 408
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=43.78 E-value=7.8e+02 Score=31.15 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCC
Q 000196 172 AAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRN 251 (1874)
Q Consensus 172 aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~ 251 (1874)
.-+.+++++++..|..+.|++|.+.+.+.. ++|.- ..++..+..+|.+ .+.+.+..++|.++..+.++
T Consensus 181 ~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q----~~p~~----~~ll~~l~~LI~Q----k~~evL~~ciP~L~g~l~ds 248 (851)
T KOG3723|consen 181 MLLRVLSAVYEKQPQPINPHLPELLALLSQ----LEPEQ----YHLLRLLHVLIKQ----KQLEVLQKCIPFLIGHLKDS 248 (851)
T ss_pred HHHHHHHHHHhcCCCccCcccHHHHHHhcC----CCHHH----HHHHHHHHHHHHh----ccHHHHHHHHHHHHHHhccc
Confidence 456678888999999999999988875543 44432 2345666666664 44567889999999888876
Q ss_pred C
Q 000196 252 A 252 (1874)
Q Consensus 252 ~ 252 (1874)
+
T Consensus 249 ~ 249 (851)
T KOG3723|consen 249 T 249 (851)
T ss_pred c
Confidence 4
No 409
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=43.61 E-value=1.1e+02 Score=38.73 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~Rl 1772 (1874)
.+.++.-.|+.|++-+|....||..++..+.+- +--..||..+.+|+.+. ...++.+.-|
T Consensus 300 ~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN--------------E~E~~ai~AL~rcl~Ld------P~NleaLmaL 359 (579)
T KOG1125|consen 300 DLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN--------------ENEQNAISALRRCLELD------PTNLEALMAL 359 (579)
T ss_pred CchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc--------------cchHHHHHHHHHHHhcC------CccHHHHHHH
Confidence 367889999999999999999999999886651 11126788888888884 2334443333
Q ss_pred HHHHHhcCCcHHHHHHHHhcccCCChhhHHHHH-HHHHHhc--cCCChhHHHHHHHHHHHHHhhCc
Q 000196 1773 LTLWFNHGATEEVQIALQKGFAHVNINTWLVVL-PQIIARI--HSNNRAVRELIQSLLVRIGQSHP 1835 (1874)
Q Consensus 1773 LtLwf~~g~~~~v~~~~~~~~~~ip~~~wl~~i-pQLiari--~~~~~~v~~~l~~ll~~i~~~hP 1835 (1874)
=--.-+-|...+....+.+=+..=|+|.|+..- ++--.-- .-.+.....-|..+....++.+|
T Consensus 360 AVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 360 AVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 222222233333444444545555555554321 0100000 00122334455566666666666
No 410
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.60 E-value=3.5e+02 Score=30.44 Aligned_cols=126 Identities=14% Similarity=0.136 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
|-.+.+++-++.-|=+++|+.|-.+..++..+.-... .....--.|..+--.+.+++ ..+|++.|+.-++-+
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~-----skhDaat~YveA~~cykk~~---~~eAv~cL~~aieIy 103 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG-----SKHDAATTYVEAANCYKKVD---PEEAVNCLEKAIEIY 103 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-----CchhHHHHHHHHHHHhhccC---hHHHHHHHHHHHHHH
Confidence 4478999999999999999999999888765432111 11122233444444556664 689999998765432
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWAL 1720 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~ 1720 (1874)
.. ......-|+-+.-+|+.... .....+..+.+|+.|.++...- -|....-|.
T Consensus 104 t~----------------~Grf~~aAk~~~~iaEiyEs-----dl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ 162 (288)
T KOG1586|consen 104 TD----------------MGRFTMAAKHHIEIAEIYES-----DLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ 162 (288)
T ss_pred Hh----------------hhHHHHHHhhhhhHHHHHhh-----hHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence 21 12233445666666665532 1245677788888887765532 244555554
Q ss_pred H
Q 000196 1721 F 1721 (1874)
Q Consensus 1721 ~ 1721 (1874)
|
T Consensus 163 y 163 (288)
T KOG1586|consen 163 Y 163 (288)
T ss_pred H
Confidence 4
No 411
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.14 E-value=4.1e+02 Score=39.85 Aligned_cols=188 Identities=19% Similarity=0.106 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhhcCCcCc-cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc-cccchHH-HHHHHHHH
Q 000196 615 VREYAISVAGRLSEKNPAY-VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAP-IHKALVAR 691 (1874)
Q Consensus 615 VR~~a~~~l~~l~~~~p~~-v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~-il~~ll~~ 691 (1874)
-...++..++.+...+|.. +.-.+.+ ++-++..... ...+.+..+..+...+++...+. ..+.++. ++..+.+.
T Consensus 896 ~k~~tl~~I~~~i~~~g~~~v~~~~~~-i~~~L~~~~~--~~~~l~~~~~~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~ 972 (2382)
T KOG0890|consen 896 QKKKTLKGIKKLISFMGSKAVSTRLPK-IEFLLQFGTL--FKDELRFLALKAWHIFIRILNDNEKSDILDRNIIAALFPL 972 (2382)
T ss_pred HHHHHHHhHHHHHhhccHHHHHHHhHH-HHHHHHHhhh--cchhHHHHHHHHHHHHHHHHhhhhhcchhhhHHHHHHHHH
Confidence 3466788888888888733 3222222 3233322111 22355667777777777654322 2233333 56666666
Q ss_pred hhccCCC-----------CC-------------ChhH-HHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhh
Q 000196 692 LLEGTGI-----------NA-------------NNGI-ISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTK 746 (1874)
Q Consensus 692 l~~~~~~-----------~~-------------~~~v-~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~ 746 (1874)
+...... +. .+.. ..+...+....++..+.. .-+...++.+...+.+. +..+
T Consensus 973 l~~~~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~~~~r~~~~~--~~l~~~l~~~~~~~~~e-nl~v 1049 (2382)
T KOG0890|consen 973 LEHIELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAIQEARGLLSE--DDLDDQLRDFMKKLKHE-NLPV 1049 (2382)
T ss_pred hccccHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHHHHHHhhccc--cchhhhhHHHHHHhHhh-hhHH
Confidence 5321000 00 0000 011122233333322221 03455566666666654 4567
Q ss_pred HHHHHHHHHHHHhhc--------cccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccch
Q 000196 747 REVAVSTLGQVVQST--------GYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAH 809 (1874)
Q Consensus 747 r~~A~~~Lg~l~~~~--------~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~ 809 (1874)
|-.++.-|+...... ...+.|-....++++.|+..-... .......+.+|||.+||+||..+
T Consensus 1050 r~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~-~~~~~~~~akcLg~lgaidp~~~ 1119 (2382)
T KOG0890|consen 1050 RVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKK-TSQLEELCAKCLGELGAIDPSCH 1119 (2382)
T ss_pred HHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccCchhh
Confidence 766766666555421 111222222334555555443322 24678888899999999999854
No 412
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=43.12 E-value=98 Score=31.17 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=45.5
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHH
Q 000196 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNH 327 (1874)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~ 327 (1874)
.+.++.+.+-+ -...+.++++.++..++++++.|+.-++.+|..++...+..|.. ++..-...
T Consensus 21 ~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~-~~~~~~~~ 83 (122)
T cd03572 21 LYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKR-ELQRNSAQ 83 (122)
T ss_pred HHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHH-HHHHhHHH
Confidence 44555542221 12346678999999999999999999999999999999888875 44444333
No 413
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=42.31 E-value=7.4e+02 Score=30.49 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=35.5
Q ss_pred chhHHHHHHhhccc-ccC--CCcchh--hHHHHHhhhccCCChHHHHHHHHHhHHhhh
Q 000196 479 SAPVQLALQTLARF-NFK--GHDLLE--FARDSVVLYLDDEDKATRKDAALCCCKLVA 531 (1874)
Q Consensus 479 ~~~~~~Al~~L~~~-~f~--~~~l~~--~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~ 531 (1874)
+..++.||.=+|.| ... |..+.+ -.++.+..++.|++++||..|..+.-+++.
T Consensus 381 p~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 381 PIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred CceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 33456788888877 221 322211 133567789999999999999888777764
No 414
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.72 E-value=1.7e+02 Score=34.00 Aligned_cols=82 Identities=18% Similarity=0.243 Sum_probs=59.3
Q ss_pred hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHH
Q 000196 1669 PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTG 1748 (1874)
Q Consensus 1669 ~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~ 1748 (1874)
..+|-+|.+||++ ++.++--+.|+.+||.+.|+|-++++....+ .+ ...|++.
T Consensus 119 cNRAAAy~~Lg~~-------------~~AVkDce~Al~iDp~yskay~RLG~A~~~~-------------gk-~~~A~~a 171 (304)
T KOG0553|consen 119 CNRAAAYSKLGEY-------------EDAVKDCESALSIDPHYSKAYGRLGLAYLAL-------------GK-YEEAIEA 171 (304)
T ss_pred HHHHHHHHHhcch-------------HHHHHHHHHHHhcChHHHHHHHHHHHHHHcc-------------Cc-HHHHHHH
Confidence 4578899999886 4567778899999999999999999875531 12 2367888
Q ss_pred HHHHHhhccccCCCcchHHhHHHHHHHHHhcCC
Q 000196 1749 YFHSIACAAHAKGVDDSLQDILRLLTLWFNHGA 1781 (1874)
Q Consensus 1749 f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~ 1781 (1874)
|-|+|.+.+ ...++..-++....-+.-..
T Consensus 172 ykKaLeldP----~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 172 YKKALELDP----DNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhhhccCC----CcHHHHHHHHHHHHHhcCCC
Confidence 999998863 23356666666665555443
No 415
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=41.66 E-value=2.3e+02 Score=38.04 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=69.2
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
++..|-..+.+ +.-|..++.+||.++...|..+..... .++..+|..|+.+ .+...-..|+.+|..++-..+..+.
T Consensus 71 ~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D-~~~~~~~~al~~LimlLP~ip~~l~ 147 (668)
T PF04388_consen 71 LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFD-TSITVVSSALLVLIMLLPHIPSSLG 147 (668)
T ss_pred HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhc-ccHHHHHHHHHHHHHHhccccchhh
Confidence 34444445544 467899999999999999987655544 3445567777777 6677677788888888888899999
Q ss_pred cchHHHHHHHHHHhh
Q 000196 679 PYIAPIHKALVARLL 693 (1874)
Q Consensus 679 py~~~il~~ll~~l~ 693 (1874)
+|++.++.++...+.
T Consensus 148 ~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 148 PHLPDLFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888763
No 416
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=41.27 E-value=56 Score=25.94 Aligned_cols=32 Identities=31% Similarity=0.599 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 000196 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPE 1601 (1874)
Q Consensus 1570 ~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~ 1601 (1874)
..|+.+++..+..|+++.|...+.++...+|+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 57999999999999999999999999987663
No 417
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=40.86 E-value=1e+02 Score=31.86 Aligned_cols=88 Identities=19% Similarity=0.290 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHH
Q 000196 1285 PIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWY 1364 (1874)
Q Consensus 1285 ~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~ 1364 (1874)
++++..+...-.+++.....+.|+|..+... .........|+.+|.+.+..+.. .-++.....++........
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~------~~~~~~~~~li~ly~~~~~~~ll-~~l~~~~~~yd~~~~~~~c 79 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN------SENPALQTKLIELYAKYDPQKEI-ERLDNKSNHYDIEKVGKLC 79 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC------ccchhHHHHHHHHHHHHCHHHHH-HHHHhccccCCHHHHHHHH
Confidence 4667777777778888999999999877542 12346778999999988665544 3343222345555555667
Q ss_pred HHhcCHHHHHHHHHH
Q 000196 1365 EKLQRWDDALKAYTN 1379 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~ 1379 (1874)
++.|.|++|.-.|.+
T Consensus 80 ~~~~l~~~~~~l~~k 94 (140)
T smart00299 80 EKAKLYEEAVELYKK 94 (140)
T ss_pred HHcCcHHHHHHHHHh
Confidence 888888888888865
No 418
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.60 E-value=5e+02 Score=32.45 Aligned_cols=154 Identities=17% Similarity=0.234 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++.-.+++.+-+.-|+++++-+.+.......--|+ .|+|.-=++..|-+++ +-..|++....-+ ++
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~----------~~Evy~~fAeiLtDqq---qFd~A~k~YD~ai-~L 491 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN----------CPEVYNLFAEILTDQQ---QFDKAVKQYDKAI-EL 491 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------CchHHHHHHHHHhhHH---hHHHHHHHHHHHH-hh
Confidence 44667788888888888999999888776654443 3677777889998887 4677888776533 22
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
... .... ...-..+..+..+ +.+|. ++++...+...+|+++||+.+.|+..+|.+--.
T Consensus 492 E~~--~~~~--------~v~~~plV~Ka~l-~~qwk---------~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ-- 549 (606)
T KOG0547|consen 492 EPR--EHLI--------IVNAAPLVHKALL-VLQWK---------EDINQAENLLRKAIELDPKCEQAYETLAQFELQ-- 549 (606)
T ss_pred ccc--cccc--------cccchhhhhhhHh-hhchh---------hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH--
Confidence 211 0000 0112234444433 33475 467889999999999999999999999976221
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHH
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTL 1775 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtL 1775 (1874)
..-+..||+-|=+|+.+. -+...++...|+
T Consensus 550 ------------~~~i~eAielFEksa~lA-------rt~~E~~~a~s~ 579 (606)
T KOG0547|consen 550 ------------RGKIDEAIELFEKSAQLA-------RTESEMVHAYSL 579 (606)
T ss_pred ------------HhhHHHHHHHHHHHHHHH-------HhHHHHHHHHHH
Confidence 134568999999998884 235556666664
No 419
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=40.35 E-value=1.4e+03 Score=33.08 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=29.8
Q ss_pred hhcchhHHHHHHHHHhHhHhhhCh---hhHHHHHHHHHHHHHHHhhcC
Q 000196 290 LEHRDRLVRLSITSLLPRIAHFLR---DRFVTNYLKICMNHILTVLRI 334 (1874)
Q Consensus 290 ~~~~~~~vr~~~~~~i~~la~~~~---~~f~~~yl~~~~~~Ll~~L~~ 334 (1874)
++.+.+..-++++.+|-.|+..+. .+|+. .+..+.+|...|.-
T Consensus 447 l~~~kEsTLKavLSALWNLSAHcteNKA~iCa--VDGALaFLVg~LSY 492 (2195)
T KOG2122|consen 447 LRNKKESTLKAVLSALWNLSAHCTENKAEICA--VDGALAFLVGTLSY 492 (2195)
T ss_pred HHhcccchHHHHHHHHhhhhhcccccchhhhc--ccchHHHHHhhccc
Confidence 345555566677888887876544 45663 68889999998864
No 420
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=40.07 E-value=5.8e+02 Score=31.06 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=90.8
Q ss_pred CCCcHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhh
Q 000196 19 GGGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li 97 (1874)
.+..+.+++.+.++++++....|+ -...+...+..............+.+.+.+.+.+...+|.....-|++.|.-.++
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 345678899999999988765555 3444555554110112222345566677777777777776655555555554444
Q ss_pred ccccCcchhHHHHHHHHHH---------------hhcccCCChHHHHHHHHHHHHHhhhCC-CcchHHHHHHHHHHHhhh
Q 000196 98 DVALGENASKVSKFSNYMR---------------TVFEVKRDREILVLASKVLGHLARAGG-AMTADEVEFQVKMALDWL 161 (1874)
Q Consensus 98 ~~~~~~~~~~~~~~~~~L~---------------~~l~~~~d~~v~~~aa~~lg~l~~~~g-~~~~~~v~~~~~~~~~~l 161 (1874)
...... ...+.. .+... +++....+.+-..-..+++.++..... ....+. .....+++=++
T Consensus 136 ~~~~~~-~~~~~~-~~~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~l 212 (339)
T PF12074_consen 136 ALSSWK-LDKIDS-KNISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYL 212 (339)
T ss_pred Hhcccc-chhhhh-hhhhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHH
Confidence 310000 000000 00000 111100223333444555555544311 111111 12233333333
Q ss_pred cCCC--cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCc
Q 000196 162 RGDR--VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT 207 (1874)
Q Consensus 162 ~~~~--~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~ 207 (1874)
--.. .+..|..|+..++.+....|..+ -..++..+|.-+.+.+
T Consensus 213 l~s~~~~~~vR~~A~~~l~~l~~~~~~~l---~~~li~~l~~~l~~~~ 257 (339)
T PF12074_consen 213 LCSSNVSWKVRRAALSALKKLYASNPELL---SKSLISGLWKWLSSSE 257 (339)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhChHHH---HHHHHHHHHHHHHhcc
Confidence 2223 67788888999999888888762 3346666776665443
No 421
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.98 E-value=2.1e+02 Score=36.09 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=72.9
Q ss_pred HHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHH
Q 000196 564 KLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRH 641 (1874)
Q Consensus 564 ~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~ 641 (1874)
+-......+||+.+-..+++.++... .. ..+.++.|..-++..+..|...|+.+|..++++|+..|--.+ .++
T Consensus 8 kAT~~~l~~pDWa~NleIcD~IN~~~-~~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 8 KATSESLAEPDWALNLEICDLINSTE-GG----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred HhhcccccCccHHHHHHHHHHHhcCc-cC----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333457899999999999996422 11 247899999999999999999999999999999987653211 334
Q ss_pred HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhC
Q 000196 642 LIQLLTYLEQSSADNKCREESAKLLGCLIRNC 673 (1874)
Q Consensus 642 l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~ 673 (1874)
|.+++....+.+.+..+|+.++.+|..=-...
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af 114 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAF 114 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHc
Confidence 44444444443345677887777766665553
No 422
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=39.83 E-value=80 Score=31.53 Aligned_cols=68 Identities=12% Similarity=0.038 Sum_probs=42.3
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l--~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
++.++..|....+...---|+.=|++++.+.|.. ...+ -..-+.|...|.++++.||..|..|+..++
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4445555532223223333677788888887763 1122 134567889999999999999999988765
No 423
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=39.12 E-value=5.1e+02 Score=31.62 Aligned_cols=93 Identities=12% Similarity=0.157 Sum_probs=49.7
Q ss_pred hHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCC
Q 000196 295 RLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPR 374 (1874)
Q Consensus 295 ~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~ 374 (1874)
..++..++.++..|..|-. .|.+.--++++..+...|.. +.-..++.+|.--+..++..+.++++.|+..+.......
T Consensus 211 ~D~~~~~~~~Ls~LisYh~-~~~k~~qd~iV~~l~~GL~s-~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~i~tt~ 288 (356)
T PF03542_consen 211 ADLQVCVFPVLSALISYHS-HFSKQEQDEIVRALESGLGS-KTAKPCIHALTICCYEMPDSMKKLLPSILLKLSKISTTP 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCHhHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccch
Confidence 4566667777777766533 12222224555555555543 111234444444455567678888888888776544322
Q ss_pred CCCCCchhHHHHHHHHH
Q 000196 375 RGKPSLEALACVGNIAR 391 (1874)
Q Consensus 375 ~~~~~~~a~~~l~~l~~ 391 (1874)
......+++++.+++
T Consensus 289 --~~Ai~ILEFLs~L~~ 303 (356)
T PF03542_consen 289 --NMAIHILEFLSSLSR 303 (356)
T ss_pred --hhHHHHHHHHHHHhh
Confidence 222345666665554
No 424
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=39.02 E-value=4.1e+02 Score=27.77 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
...+..+.+++... ++.+...++..+..++..+|..|...+ .+++..+...+.+..+..+++.++..+..-+.
T Consensus 36 k~a~ral~KRl~~~-----n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 36 KDCLKAIMKRLNHK-----DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 56777888888864 788988899999999999997665443 35677777777764567788888888877776
Q ss_pred hccc
Q 000196 760 STGY 763 (1874)
Q Consensus 760 ~~~~ 763 (1874)
....
T Consensus 111 ~f~~ 114 (144)
T cd03568 111 EFKN 114 (144)
T ss_pred HhCC
Confidence 6543
No 425
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=38.95 E-value=7.1e+02 Score=29.29 Aligned_cols=118 Identities=18% Similarity=0.062 Sum_probs=66.6
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000196 1578 LCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1874)
Q Consensus 1578 laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~ 1657 (1874)
+|-++|++++|...+.++........|+.. ..-..+.|...|-+..+++ +..+|+.-|+.-.+-++......
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~--~~La~~~yn~G~~l~~~~~--~~~~a~~wL~~a~~~l~~~~~~~---- 73 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMA--EELARVCYNIGKSLLSKKD--KYEEAVKWLQRAYDILEKPGKMD---- 73 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHH--HHHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhhhhcc----
Confidence 577899999999999987654322111110 0113556666677767762 36789888887655443211000
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000196 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1874)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1874)
....+..+++.++++.++.=..+.+. .+..+.+.+....+-+-.|+
T Consensus 74 ----~~~~~~~elr~~iL~~La~~~l~~~~---~~~~~ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 74 ----KLSPDGSELRLSILRLLANAYLEWDT---YESVEKALNALRLLESEYGN 119 (278)
T ss_pred ----ccCCcHHHHHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHHhCCC
Confidence 01234457888998888887765431 23333334444444344443
No 426
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=38.48 E-value=4.7e+02 Score=27.10 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=63.3
Q ss_pred HHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcC
Q 000196 664 KLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDG 741 (1874)
Q Consensus 664 ~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~ 741 (1874)
.-|++.++..+ ......+..+.+++... ++.+...++..++.+..++|..|...+ ..++..+...+.+.
T Consensus 27 l~icD~i~~~~----~~~kea~~~l~krl~~~-----~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 27 LEICDLINSSP----DGAKEAARALRKRLKHG-----NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK 97 (140)
T ss_dssp HHHHHHHHTST----THHHHHHHHHHHHHTTS-----SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC----ccHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence 34556665542 22356778888888875 889999999999999999998775554 35666677666654
Q ss_pred cchh---hHHHHHHHHHHHHhhccc
Q 000196 742 AAVT---KREVAVSTLGQVVQSTGY 763 (1874)
Q Consensus 742 ~~~~---~r~~A~~~Lg~l~~~~~~ 763 (1874)
.... +|+.++..+..-....+.
T Consensus 98 ~~~~~~~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 98 KTDPETPVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp TTHHHSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCchhHHHHHHHHHHHHHHHHHCC
Confidence 3333 788888777777666533
No 427
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=38.19 E-value=1.1e+02 Score=30.88 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=36.3
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHH
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRH 641 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~ 641 (1874)
+++..|..-|+|.++.|+..++++|..++...+..|.-.+++-
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~ 80 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRN 80 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 5788889999999999999999999999998876666555554
No 428
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=38.10 E-value=1.6e+02 Score=35.64 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCC
Q 000196 1614 QVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDES 1693 (1874)
Q Consensus 1614 ~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~ 1693 (1874)
..+...|.++-..|. ..++++.|++.+.+.. +.. .+.++|+.+...+ .
T Consensus 439 ~AV~~~AEL~~~Eg~---~~D~i~LLe~~L~~~~-------------------D~~----LH~~Lgd~~~A~N------e 486 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGP---TKDIIKLLEKHLIIFP-------------------DVN----LHNHLGDIMRAQN------E 486 (564)
T ss_pred HHHHHHHHHHHhhCc---cchHHHHHHHHHhhcc-------------------ccH----HHHHHHHHHHHhh------h
Confidence 456677777777774 5789999998776532 112 3788999998764 4
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1694 IPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
+.+.+.+|..|..++|+..++-..+-
T Consensus 487 ~Q~am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 487 PQKAMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHH
Confidence 78999999999999999998877554
No 429
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=36.92 E-value=1.2e+03 Score=32.05 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
++++.-++|..|.+++|+.--||..+++++.+
T Consensus 52 ~le~A~ehYv~AaKldpdnlLAWkGL~nLye~ 83 (1238)
T KOG1127|consen 52 DLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER 83 (1238)
T ss_pred CHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence 47889999999999999999999999888665
No 430
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=36.89 E-value=1.8e+02 Score=28.28 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=38.7
Q ss_pred hhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCC
Q 000196 1395 LGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDD 1455 (1874)
Q Consensus 1395 ~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~ 1455 (1874)
+-++-+|-+-|+|+......... ....+-|++|-|+|++|-=+..+.++..+..
T Consensus 44 lIr~~sLmNrG~Yq~ALl~~~~~-------~~pdL~p~~AL~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 44 LIRLSSLMNRGDYQEALLLPQCH-------CYPDLEPWAALCAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHHHHHHHTT-HHHHHHHHTTS---------GGGHHHHHHHHHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHhhHHHHHHHHhcccC-------CCccHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 44556788899999886555432 1235679999999999999999999986654
No 431
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=36.33 E-value=1e+02 Score=30.27 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH
Q 000196 1619 YLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEII 1698 (1874)
Q Consensus 1619 ~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~ 1698 (1874)
.|+-.|.+|+ +..|++++++++..-....+. -.-..+.+.++..+|.=... ++....-.-..+
T Consensus 2 ~A~~~~~rGn---hiKAL~iied~i~~h~~~~~~------------~~lh~~QG~if~~lA~~ten--~d~k~~yLl~sv 64 (111)
T PF04781_consen 2 KAKDYFARGN---HIKALEIIEDLISRHGEDESS------------WLLHRLQGTIFYKLAKKTEN--PDVKFRYLLGSV 64 (111)
T ss_pred hHHHHHHccC---HHHHHHHHHHHHHHccCCCch------------HHHHHHHhHHHHHHHHhccC--chHHHHHHHHhH
Confidence 5778899997 578999999988654321100 00112334445444443221 111111133456
Q ss_pred HHHHHHHhhcccchHHHHHHH
Q 000196 1699 AAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1699 ~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
+.|.+++.+.|......+..|
T Consensus 65 e~~s~a~~Lsp~~A~~L~~la 85 (111)
T PF04781_consen 65 ECFSRAVELSPDSAHSLFELA 85 (111)
T ss_pred HHHHHHhccChhHHHHHHHHH
Confidence 778888888888755555544
No 432
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=35.93 E-value=44 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=19.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcc
Q 000196 1361 ESWYEKLQRWDDALKAYTNKASQA 1384 (1874)
Q Consensus 1361 ~~~~E~lg~W~~Al~~y~~~~~~~ 1384 (1874)
+..|.++|++++|.++|++.++-.
T Consensus 8 g~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 8 GKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345889999999999999887643
No 433
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=35.80 E-value=3.7e+02 Score=30.45 Aligned_cols=103 Identities=16% Similarity=0.218 Sum_probs=70.0
Q ss_pred CCChhHHHHHHHHHHHHHHhcccchhhcHH--hHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhc-c--cccccc---cc
Q 000196 699 NANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGAAVTKREVAVSTLGQVVQST-G--YVITPY---NE 770 (1874)
Q Consensus 699 ~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~-~--~~i~p~---~~ 770 (1874)
+....++.+++..||.|.+.+...+..|+- +++|..+..+..+ +...+..|...+++|...- | |...-| ..
T Consensus 136 r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~a 214 (293)
T KOG3036|consen 136 RPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSA 214 (293)
T ss_pred CchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHH
Confidence 346678889999999999988877777764 7899999999866 4556778888888776321 1 111112 22
Q ss_pred chHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 771 YPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 771 ~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
.-.+++.++..+.+..+..+-..+++|.-.+.
T Consensus 215 v~~~L~kmv~~l~~~ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 215 VALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS 246 (293)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 23456666555656667777778888866553
No 434
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=35.17 E-value=2.1e+02 Score=29.39 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=52.8
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHH-HHHHHHHHhhcCC-----CCcchHHHHHHHHHhhchh
Q 000196 282 VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLK-ICMNHILTVLRIP-----AERDSGFIALGEMAGALDG 354 (1874)
Q Consensus 282 i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~-~~~~~Ll~~L~~~-----~~R~~a~~alg~la~~v~~ 354 (1874)
.+..+-..+.++++.++..++.++..+....+..|...+-. +.+..+...+.+. ..|..++..+..-+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45556666788999999999999999999988877654444 5666666666542 2356777777777776654
No 435
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=35.01 E-value=97 Score=29.11 Aligned_cols=65 Identities=11% Similarity=0.252 Sum_probs=47.2
Q ss_pred hHHHHHHhhcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000196 1029 LLPALIRLFKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALC 1093 (1874)
Q Consensus 1029 ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~ 1093 (1874)
++-++..++....+.++|+..++++..++.. .++..=...|+..+..+..++++++...|++++-
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4556666666667889999999999999775 2343335566777777777777888888888763
No 436
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=34.83 E-value=2.4e+02 Score=32.48 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=63.4
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc---cccccccc---ch
Q 000196 701 NNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG---YVITPYNE---YP 772 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~---~~i~p~~~---~p 772 (1874)
...++.+++..+|.++.....+...|+ .+++|..+..|.-+ +.-.|..|...+.++...-. ++..-+.. .-
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~ 187 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVA 187 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHH
Confidence 455778889999999987766666666 38999999999876 45567777777777664321 22222222 23
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 773 QLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 773 ~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
.+++.++..+..+.++.+=+-+++|.-.+.
T Consensus 188 ~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 188 MVLNKMVEQLVKQPSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 445555555555667777777888866653
No 437
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=34.69 E-value=48 Score=31.35 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000196 255 HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1874)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~l 308 (1874)
..+||+++.|++++...+-.+.+++.+++..+-+..+ ....|+.++-.++...
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~-~~~~I~~tvk~tl~eF 56 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAN-DPQPIRTTVKKTLSEF 56 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSS-S-SSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 4699999999999997665566777888777655554 3666888777666644
No 438
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=34.54 E-value=1.1e+03 Score=30.03 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHH-HHHHhhcCCchhHHHHHHHHHHHHHHHHh
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVD-AIWVALRDPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~-~i~~~l~D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
+.|.+|..+|+.++...|.. -+..++. .++..|.+++..-|..|+-.+........
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~---~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~ 158 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPES---SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACK 158 (441)
T ss_pred HHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCc
Confidence 57999999999999887652 3345554 57889999999889888888877665544
No 439
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=34.36 E-value=1.4e+03 Score=31.25 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHh
Q 000196 613 FDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARL 692 (1874)
Q Consensus 613 ~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l 692 (1874)
..+|++...++.+..-..- ...+.+...+...+..+ .++++...|+-..++++.++...++.+.|....+++.+....
T Consensus 507 LT~~~a~~t~~~~~n~~~~-~~~~~lenl~~lvl~~~-as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv 584 (947)
T COG5657 507 LTTREAYSTIFDDWNFSVC-SKIGLLENLILLVLSLM-ASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLV 584 (947)
T ss_pred HHHHHHHHHHHHhcccccc-cccccHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHH
Confidence 4578888887776544331 23333444333333333 333566778889999999999999999997777766665544
Q ss_pred hccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHh
Q 000196 693 LEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL 739 (1874)
Q Consensus 693 ~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~ 739 (1874)
........++.+....+..+|.++... ....++.+|.++..+.
T Consensus 585 ~~~~knps~p~~~h~~fe~I~al~~~~----~~~~~~~ip~l~~~l~ 627 (947)
T COG5657 585 EINAKNPSNPQFAHYTFEDIGALVFLK----SGMCEITIPTLVLALV 627 (947)
T ss_pred HHHccCCccHHHHHHHHHHHHHHHHhh----hcccccchHHHHHhhC
Confidence 322111135556666677777766532 2233444555555543
No 440
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=34.32 E-value=1.2e+03 Score=30.58 Aligned_cols=204 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC--CChhhhhhHHHHHhHhh-
Q 000196 21 GSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES--NDAAENLGALRAIDELI- 97 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s--~~~~~r~~~i~ai~~li- 97 (1874)
|+++.-..+++..... .+.+.+. +=.++ .+..++++.-.+...++.+.....+++ .......|.+.-.+..+
T Consensus 337 m~~~~q~~~v~~f~p~-~~~~n~~--lw~~~--~~~~L~~~lr~~~~~~i~~~~~~~~~~~~~~~~~s~g~l~~~~~~Ls 411 (559)
T PF14868_consen 337 MAPDHQSEFVQDFSPS-AETENLL--LWEGF--PLNALSDELRKQIVQEIFTLCFAFCQKWLSPSSCSLGELGQLNFALS 411 (559)
T ss_pred cCHHHHHHHHHhcCcc-ccccchH--HHHhc--cHHhCCHHHHHHHHHHHHHHHHHHHHHhcccCCcCcchHhHHHHHHH
Q ss_pred ----------ccccCcchhHHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC
Q 000196 98 ----------DVALGENASKVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD 164 (1874)
Q Consensus 98 ----------~~~~~~~~~~~~~~~~~L~~~l~~---~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~ 164 (1874)
+.-......-+.....-+...+.. ..++.+...-...++-+...-+...++.+...+-..-.++..+
T Consensus 412 alL~~c~~~~~~~d~~~~~~i~~ii~~lw~~~~~~~v~~~~~l~~~~~~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~ 491 (559)
T PF14868_consen 412 ALLQVCNSSGSTIDMKDQTFIVEIISQLWSFLSSKQVSSQPYLQQTLSLLLSLLSFFIQLLDPQLIEQVLTELTSLFKSE 491 (559)
T ss_pred HHHHHhcccccccCHHHHHHHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhhC
Q ss_pred CcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHhhcc
Q 000196 165 RVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 165 ~~~~~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
.....|.+.+.+++-+++. .|......+-.-+..++..| +|.+-.|+.-|.+|++.+.+.....+
T Consensus 492 pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~~e~ 558 (559)
T PF14868_consen 492 PPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTSHEE 558 (559)
T ss_pred CCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCCccc
No 441
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.15 E-value=1.7e+02 Score=34.03 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=57.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPY 680 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py 680 (1874)
+..++..+++.++.||.+|+..+-.+... |..++-.-....++-+.++-.. ..+ .+.|+.++.+++.... .-+..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~-l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEE-LRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHH-HHHHH
Confidence 34466778899999999999887777666 4333222222233444444333 122 4578888888886642 11111
Q ss_pred hHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHH
Q 000196 681 IAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR 717 (1874)
Q Consensus 681 ~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~ 717 (1874)
+..++..++..+.++ .+.....++..+..+++
T Consensus 80 l~~~~k~l~~~~~~p-----~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDP-----QSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHhcCc-----ccchHHHHHHHHHHhcc
Confidence 222555555555554 23333444444444443
No 442
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=33.71 E-value=7.1e+02 Score=28.17 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=82.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|+-.|-+.-+.|..+.|...-.+++.++|.. -.|.--|--+|..+| +..+|...++.-+.+-
T Consensus 67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~----------GdVLNNYG~FLC~qg---~~~eA~q~F~~Al~~P 133 (250)
T COG3063 67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN----------GDVLNNYGAFLCAQG---RPEEAMQQFERALADP 133 (250)
T ss_pred ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc----------cchhhhhhHHHHhCC---ChHHHHHHHHHHHhCC
Confidence 457889999999999999999999999999887752 245556788898999 4789999888755431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
.-. .....-+.+.-|.++.|+ .+.....|+.+++++|+..-+....|.-
T Consensus 134 ~Y~-------------~~s~t~eN~G~Cal~~gq-------------~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 134 AYG-------------EPSDTLENLGLCALKAGQ-------------FDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred CCC-------------CcchhhhhhHHHHhhcCC-------------chhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 100 001122345556655554 3567789999999999887766666544
No 443
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=32.99 E-value=6.3e+02 Score=26.90 Aligned_cols=113 Identities=15% Similarity=0.028 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHH
Q 000196 1616 MYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIP 1695 (1874)
Q Consensus 1616 ~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~ 1695 (1874)
.+-.+...+..|+ ..+|+..++..+.... +....+.++..+|.-.... ...+
T Consensus 38 ~~~~g~~~~~~g~---~~~A~~~~~~al~l~~-------------------~~~~~~~~~~~lg~~~~~~------g~~~ 89 (168)
T CHL00033 38 YYRDGMSAQSEGE---YAEALQNYYEAMRLEI-------------------DPYDRSYILYNIGLIHTSN------GEHT 89 (168)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHhccc-------------------cchhhHHHHHHHHHHHHHc------CCHH
Confidence 3445566666774 6789988887654211 0111233444455444433 3467
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1696 EIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1696 ~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
+.+..|.+|.+.+|....+|..+|......-+.....++......+...|+..|-+++...
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999999999998887766443222122222222346667778887777653
No 444
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=32.79 E-value=86 Score=22.89 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=22.8
Q ss_pred HHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000196 1673 RVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1874)
Q Consensus 1673 ~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1874)
+.+..+|.-...+ ...++...+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~------~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQL------GDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHT------TSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCC
Confidence 4555566655544 3468899999999999884
No 445
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=32.45 E-value=3.1e+02 Score=29.14 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=64.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHH
Q 000196 205 DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REV 282 (1874)
Q Consensus 205 D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i 282 (1874)
...+.+|..|.-++..+++.-. ..+...+-+-+...+.++ +.+..-.++.++.++....++....-| +.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~-------~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~ 87 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAR-------EEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSEGF 87 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTH
T ss_pred CCCHhHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhH
Confidence 3567899999888888753211 122222222222222222 123455556666666554443322211 123
Q ss_pred HHHHHHHhh--cchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC
Q 000196 283 AEIVLRYLE--HRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA 336 (1874)
Q Consensus 283 ~~~ll~~~~--~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~ 336 (1874)
.+.++.... .+++.++.++++++..-|... .-........+++|...+++.+
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~--~~r~~I~~~~~~~L~~~~~~~~ 141 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLSAACIDK--SCRTFISKNYVSWLKELYKNSK 141 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH--HHHHCCHHHCHHHHHHHTTTCC
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHHcccc
Confidence 444554445 678889999999998655321 1112223566888888886443
No 446
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.64 E-value=2.8e+02 Score=35.30 Aligned_cols=170 Identities=20% Similarity=0.236 Sum_probs=81.8
Q ss_pred CChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc
Q 000196 1339 HQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW 1418 (1874)
Q Consensus 1339 ~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~ 1418 (1874)
++.+.+.|++....+. .-+.....+|++|.-++||+.- .+++ .+..+..++|+.+.-.+++.+..
T Consensus 600 rd~~~a~~vLp~I~k~-~rt~va~Fle~~g~~e~AL~~s-------~D~d-------~rFelal~lgrl~iA~~la~e~~ 664 (794)
T KOG0276|consen 600 RDLEVADGVLPTIPKE-IRTKVAHFLESQGMKEQALELS-------TDPD-------QRFELALKLGRLDIAFDLAVEAN 664 (794)
T ss_pred ccccccccccccCchh-hhhhHHhHhhhccchHhhhhcC-------CChh-------hhhhhhhhcCcHHHHHHHHHhhc
Confidence 6777777876543321 1122344679999888888653 2332 35566777777766666554421
Q ss_pred CCCChHHHH--------hHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcC
Q 000196 1419 TPAEPAARL--------EMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGK 1490 (1874)
Q Consensus 1419 ~~~~~~~~~--------~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~ 1490 (1874)
.+..++. .=.+++-+|.-+..||..+--.-+.... ..-+..++.... ..+....+|+...
T Consensus 665 --s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~--~~~l~~la~~~~-~~g~~N~AF~~~~------- 732 (794)
T KOG0276|consen 665 --SEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGN--AEGLAVLASLAK-KQGKNNLAFLAYF------- 732 (794)
T ss_pred --chHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCC--hhHHHHHHHHHH-hhcccchHHHHHH-------
Confidence 1111211 0012444444444455444322111100 000000000000 0001111222111
Q ss_pred hhhhHHHHHHHHHHhHhhhhHHHHHH-hhcCCCCCCchhhHHHHHHHHHHHHhhh
Q 000196 1491 VLESYERAYSNMVRVQQLSELEEVID-YCTLPVGNPVAEGRRAIIRNMWTERIQG 1544 (1874)
Q Consensus 1491 ~~esy~ray~~l~~lq~L~EleEii~-~~~~~~~~~~~~~~~~~l~~~W~~Rl~~ 1544 (1874)
....|+++.+.++.-|.+-|---+.. |. +.+.+++...|++.|..
T Consensus 733 l~g~~~~C~~lLi~t~r~peAal~ArtYl---------ps~vs~iv~~wk~~l~k 778 (794)
T KOG0276|consen 733 LSGDYEECLELLISTQRLPEAALFARTYL---------PSQVSRIVELWKEDLSK 778 (794)
T ss_pred HcCCHHHHHHHHHhcCcCcHHHHHHhhhC---------hHHHHHHHHHHHHHhhh
Confidence 23457777788887777776554432 21 45677899999988863
No 447
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=31.57 E-value=9.6e+02 Score=30.92 Aligned_cols=113 Identities=20% Similarity=0.157 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc-
Q 000196 556 RLIEELVEKLLIAAVADADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY- 633 (1874)
Q Consensus 556 ~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~-~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~- 633 (1874)
..++.+...++-....|-++.+|...+.+|... .....|+-....++..-=.|.|.+..||..+.+++.-|+..+|..
T Consensus 270 d~i~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d 349 (740)
T COG5537 270 DEIKDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD 349 (740)
T ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch
Confidence 445566665555567788899999888888631 111111111111222223578999999999999999999999853
Q ss_pred -cchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHH
Q 000196 634 -VLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLI 670 (1874)
Q Consensus 634 -v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~ 670 (1874)
+...+.++....|..+..+ .+. .|..+.+.+..+-
T Consensus 350 ~ir~f~eRFk~rILE~~r~D-~d~-VRi~sik~l~~lr 385 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTD-SDC-VRICSIKSLCYLR 385 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cch-hhHHHHHHHHHHH
Confidence 2223333333334333444 333 6777777666553
No 448
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=31.50 E-value=2.1e+02 Score=35.90 Aligned_cols=52 Identities=23% Similarity=0.296 Sum_probs=37.5
Q ss_pred ChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHh
Q 000196 1340 QHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAAL 1404 (1874)
Q Consensus 1340 ~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~L 1404 (1874)
+|....|-++. +.-++.+.+|++|+++|+..++-+++. .+...|+-||+.+.
T Consensus 422 ~p~~~kgy~RK----------g~al~~mk~ydkAleay~eale~dp~~---~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 DPNFIKAYLRK----------GAALRAMKEYDKALEAYQEALELDPSN---AEAIDGYRRCVEAQ 473 (539)
T ss_pred CchHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHh
Confidence 45555555543 334678889999999999988654332 57788999999876
No 449
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=31.39 E-value=1.8e+02 Score=35.23 Aligned_cols=91 Identities=19% Similarity=0.144 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.|-+-.+-+=|+|+++.|+..-..+++++|+. +--.+|+.|.++- ..--+..+++-+.+...
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-------------~~~naklY~nra~---v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-------------KKTNAKLYGNRAL---VNIRLGRLREAISDCNE 312 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-------------cchhHHHHHHhHh---hhcccCCchhhhhhhhh
Confidence 6678888889999999999999888888776642 1225677776652 22233334433333221
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKR 1683 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~ 1683 (1874)
..+..+ ++ ..--...|+|++.+++|-.
T Consensus 313 Al~iD~----sy----ikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 313 ALKIDS----SY----IKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhhcCH----HH----HHHHHHHHHHHHHHHHHHH
Confidence 100000 00 0112357899999999964
No 450
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=31.35 E-value=1.2e+03 Score=29.65 Aligned_cols=87 Identities=21% Similarity=0.233 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHH
Q 000196 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVD 1044 (1874)
Q Consensus 965 ~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~ 1044 (1874)
.+++++..+...-++.+.||+|.+++++.+.= + .....+.++..+. ...-.+.+...+|.++-.+..+...+
T Consensus 181 ~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~--p----~~~~ll~~l~~LI--~Qk~~evL~~ciP~L~g~l~ds~~~~ 252 (851)
T KOG3723|consen 181 MLLRVLSAVYEKQPQPINPHLPELLALLSQLE--P----EQYHLLRLLHVLI--KQKQLEVLQKCIPFLIGHLKDSTHND 252 (851)
T ss_pred HHHHHHHHHHhcCCCccCcccHHHHHHhcCCC--H----HHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHhccccchh
Confidence 57888888888889999999999999764421 0 1112334444332 23334566777888887776666667
Q ss_pred HHHHHHHHHHhhccc
Q 000196 1045 IRRAAIETLTRLIPR 1059 (1874)
Q Consensus 1045 vr~~ai~~l~~l~~~ 1059 (1874)
++...+.-|+...+.
T Consensus 253 i~~~Ilk~ia~~~pv 267 (851)
T KOG3723|consen 253 IILNILKEIAVYEPV 267 (851)
T ss_pred HHHHHHHHHHhcCcc
Confidence 777776666655543
No 451
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=30.88 E-value=9.1e+02 Score=31.48 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=37.8
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc-CCChHHHHHHHHHHHHHhh
Q 000196 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV-KRDREILVLASKVLGHLAR 140 (1874)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~-~~d~~v~~~aa~~lg~l~~ 140 (1874)
.+.+-+.+++...|.|+|++++.--.+. + ...+.. .|..++.. ....+|...|+-++|.+.-
T Consensus 456 LLsdyv~~~~s~~ri~aIlGLglayaGs--q-~e~V~~---lL~Pi~~d~~~~~ev~~~aslsLG~Ifv 518 (878)
T KOG2005|consen 456 LLSDYLQSSSSIHRIGAILGLGLAYAGS--Q-REEVLE---LLSPIMFDTKSPMEVVAFASLSLGMIFV 518 (878)
T ss_pred HHHHhccCCCceeehHHhhhhHHhhcCC--c-hHHHHH---HHhHHhcCCCCchhHHHHHHhhcceeEE
Confidence 4556677888888999999998765442 1 222221 33333321 2235688888888886643
No 452
>PLN02789 farnesyltranstransferase
Probab=30.74 E-value=1e+03 Score=28.69 Aligned_cols=135 Identities=12% Similarity=0.072 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.|=-|-.+-.+.++.+.|.....++...+|. +..+-.-...++-..|+ .-.+++..+.+++.....
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~----------~ytaW~~R~~iL~~L~~--~l~eeL~~~~~~i~~npk 104 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLNPG----------NYTVWHFRRLCLEALDA--DLEEELDFAEDVAEDNPK 104 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCch----------hHHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHCCc
Confidence 344445555566678899999998888877663 24444455566666653 236788888776653211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHh-hcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKR-ALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~-~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
+ ..+ +...| |.. .+. ....++.+..+.++++.+|+++.+|++=+.....+ .
T Consensus 105 ------------------n--yqa--W~~R~-~~l~~l~----~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-~ 156 (320)
T PLN02789 105 ------------------N--YQI--WHHRR-WLAEKLG----PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-G 156 (320)
T ss_pred ------------------c--hHH--hHHHH-HHHHHcC----chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-h
Confidence 0 011 11111 111 121 11235678888999999999999998754433321 0
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
. ...+++.|-++|...
T Consensus 157 ------------~-~~eeL~~~~~~I~~d 172 (320)
T PLN02789 157 ------------G-WEDELEYCHQLLEED 172 (320)
T ss_pred ------------h-HHHHHHHHHHHHHHC
Confidence 1 224667777776653
No 453
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=30.64 E-value=3.6e+02 Score=32.81 Aligned_cols=90 Identities=9% Similarity=0.215 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhh-hhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHH
Q 000196 938 LQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALN-DEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE 1016 (1874)
Q Consensus 938 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~-~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~ 1016 (1874)
.+.++.-+..+|....- ..+...+.-++.+-.++. .+|..-+.+++..+-..+++ ....++.+++....
T Consensus 297 ~~~VIrglLK~WP~tnS------~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS----~HFQVAEraL~~wn 366 (457)
T KOG2085|consen 297 TETVIRGLLKYWPKTNS------SKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSS----PHFQVAERALYLWN 366 (457)
T ss_pred cHHHHHHHHHhcCCCCC------cceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCC----hhHHHHHHHHHHHh
Confidence 47888889999986541 123478888888888775 57888888888777777743 34677777766553
Q ss_pred H--HhcchhhhhhhhHHHHHHhh
Q 000196 1017 V--FGGTLDEHMHLLLPALIRLF 1037 (1874)
Q Consensus 1017 ~--~g~~~~~~~~~ilp~l~~~~ 1037 (1874)
. +-..+.+....|+|.+...+
T Consensus 367 Ne~i~~Li~~n~~~ilPiiFpaL 389 (457)
T KOG2085|consen 367 NEYIRSLISQNAEVILPIVFPAL 389 (457)
T ss_pred hHHHHHHHHhccceeeehhhHHH
Confidence 2 22233444444555544444
No 454
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=30.50 E-value=8.6e+02 Score=28.21 Aligned_cols=144 Identities=13% Similarity=0.092 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh----CCCcchHHHHHHHHHHHhhhcCC-Cc---chhHHHHHHHH
Q 000196 106 SKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA----GGAMTADEVEFQVKMALDWLRGD-RV---EYRRFAAVLIL 177 (1874)
Q Consensus 106 ~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~----~g~~~~~~v~~~~~~~~~~l~~~-~~---~~~r~aA~~~l 177 (1874)
..+.+...++...+-...-.-+...+..+|..++.. ......++...-++..++.+.++ .. -.||-|++-++
T Consensus 92 ~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~ 171 (255)
T PF10350_consen 92 DQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFL 171 (255)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHH
Confidence 344555555444443333445666666677766653 12223444555666677776654 22 47787776544
Q ss_pred -HHHHhhcCccchhchHHHHHHHHHhhcCCch--------hHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhc
Q 000196 178 -KEMAENASTVFNVHVAEFVDAIWVALRDPTL--------AVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGL 248 (1874)
Q Consensus 178 -~~la~~~p~~~~~~l~~il~~i~~~l~D~~~--------~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l 248 (1874)
..+....|..-.+.+...+..++...+.|.. .-|--|.+.|+.++..-.- ......++...+..+..++
T Consensus 172 i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L--~~~~~~yi~~~l~lai~~f 249 (255)
T PF10350_consen 172 ILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKL--SEDVSPYIEDALILAIKGF 249 (255)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHhC
Confidence 3444455543236777777777777766554 3566677777766543211 1233456677777778888
Q ss_pred cCC
Q 000196 249 GRN 251 (1874)
Q Consensus 249 ~~~ 251 (1874)
.++
T Consensus 250 ~s~ 252 (255)
T PF10350_consen 250 SSP 252 (255)
T ss_pred CCc
Confidence 776
No 455
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=30.42 E-value=1e+03 Score=28.71 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=62.4
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHH
Q 000196 1536 NMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQV 1615 (1874)
Q Consensus 1536 ~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v 1615 (1874)
..|+-++.+.......|+.+.....--.+..-.....+-.+..+-..|+...|...|..+........... .......+
T Consensus 231 ~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~ 309 (355)
T cd05804 231 LLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNK-QPARDVGL 309 (355)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchh-hhHHhhhH
Confidence 44666666665666667665544322211111223345688888888999999999887765322100000 00112355
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1616 MYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1616 ~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
.+..+-..|.+|+ ..+|+..|...+.
T Consensus 310 ~~l~A~~~~~~g~---~~~A~~~L~~al~ 335 (355)
T cd05804 310 PLAEALYAFAEGN---YATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 6778888999995 6899999887654
No 456
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=30.38 E-value=2.8e+02 Score=32.47 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000196 1698 IAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1874)
Q Consensus 1698 ~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~ 1755 (1874)
..+|..|..+.|..++.|++.|..... ...-..||=.|.||+..
T Consensus 2 ~~~Y~~A~~l~P~~G~p~nQLAvl~~~--------------~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 2 ERYYRKAIRLLPSNGNPYNQLAVLASY--------------QGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHH-TTBSHHHHHHHHHHHH--------------TT-HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCCCcccchhhhhcc--------------ccchHHHHHHHHHHHhc
Confidence 578999999999999999999966432 12346788999999865
No 457
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=30.26 E-value=1e+03 Score=28.44 Aligned_cols=179 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred cHHHHH---HHHHHHhhcCChHHHhHHH---------HHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhH
Q 000196 1324 PVAVVE---ALIHINNQLHQHEAAVGIL---------TYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVL 1391 (1874)
Q Consensus 1324 ~~~~~e---~L~~iy~~L~~~D~~~Gi~---------~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~ 1391 (1874)
.++++| .|-++|.+=||.|-|.-|. +..++.+..+..+.-|.+.|-+|.|-..|....++..-- .
T Consensus 65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa---~ 141 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA---E 141 (389)
T ss_pred CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh---H
Q ss_pred HhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccC
Q 000196 1392 EATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANG 1471 (1874)
Q Consensus 1392 ~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1471 (1874)
+....++.-|.+-.+|+.-.+.+...-+......+.+++.+..+-|-...-=+..+.....+.. ++...
T Consensus 142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k-----------Alqa~ 210 (389)
T COG2956 142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK-----------ALQAD 210 (389)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH-----------HHhhC
Q ss_pred CCCCchHHHHHHHHHHhcC------------------hhhhHHHHHHHHHHhHhhhhHHHHHH
Q 000196 1472 DGSSNGTFFRAVLLVRRGK------------------VLESYERAYSNMVRVQQLSELEEVID 1516 (1874)
Q Consensus 1472 ~~~~~~~f~~a~~~i~~~~------------------~~esy~ray~~l~~lq~L~EleEii~ 1516 (1874)
..+...+....-+.+.+|. ++|-..+-|..-.++....|...++.
T Consensus 211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
No 458
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=30.25 E-value=2.1e+02 Score=28.75 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=48.8
Q ss_pred hcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhc
Q 000196 725 QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN-GELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 725 ~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~-~~~~~~vr~~al~~lg~lg 802 (1874)
.++..++|.+...|......+-|..+...++.++....- . +++++.++..+- +.......+.++-++..+.
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-----~--~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~ 73 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-----S--DEVLNALMESILKNWTQETVQRQALICLIVLC 73 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-----c--HHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 467889999999998555678898999999999877543 2 467777776653 2222223356677776653
No 459
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.24 E-value=2.8e+02 Score=33.81 Aligned_cols=60 Identities=20% Similarity=0.124 Sum_probs=45.7
Q ss_pred hHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHH
Q 000196 1670 LIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGY 1749 (1874)
Q Consensus 1670 l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f 1749 (1874)
.+|-||+|+.+|. .++++-.++.+++|++.||.|+=|..+-.+-+ ...|+.-|
T Consensus 262 NlA~c~lKl~~~~-------------~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e--------------~~~A~~df 314 (397)
T KOG0543|consen 262 NLAACYLKLKEYK-------------EAIESCNKVLELDPNNVKALYRRGQALLALGE--------------YDLARDDF 314 (397)
T ss_pred HHHHHHHhhhhHH-------------HHHHHHHHHHhcCCCchhHHHHHHHHHHhhcc--------------HHHHHHHH
Confidence 4788898888874 56778888999999999999998888665322 12567777
Q ss_pred HHHHhhc
Q 000196 1750 FHSIACA 1756 (1874)
Q Consensus 1750 ~~si~~~ 1756 (1874)
-+++.+.
T Consensus 315 ~ka~k~~ 321 (397)
T KOG0543|consen 315 QKALKLE 321 (397)
T ss_pred HHHHHhC
Confidence 7777775
No 460
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=29.02 E-value=68 Score=34.05 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHH-HHhCCCchHHH
Q 000196 323 ICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIA-RAMGPVMEPHV 401 (1874)
Q Consensus 323 ~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~-~~~g~~~~p~l 401 (1874)
++=|.|+++|+.+..+...+..||.+...|..++..+-+.-=.-+.+++.....+....||..|..|. ..+|+-+.|++
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~~ 82 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPFM 82 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHHH
Confidence 45577888988777777888888888877776653222111122333332211111235565555555 33555667777
Q ss_pred HHHHHHHHh
Q 000196 402 RGLLDIMFS 410 (1874)
Q Consensus 402 ~~ll~~ll~ 410 (1874)
+.+++-..+
T Consensus 83 ~~L~~~~~~ 91 (174)
T PF04510_consen 83 ENLLPEISK 91 (174)
T ss_pred HHHHHHHHH
Confidence 777665443
No 461
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=28.95 E-value=7.8e+02 Score=26.78 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
+|..+.|-.++.--.-+++-.|..+|..++.++|.. ..|.-.+.+++.+-+.|.- .+|=.-++..+..
T Consensus 122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~--------r~pd~~Ll~aR~laa~g~~---a~Aesafe~a~~~- 189 (251)
T COG4700 122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF--------RSPDGHLLFARTLAAQGKY---ADAESAFEVAISY- 189 (251)
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc--------CCCCchHHHHHHHHhcCCc---hhHHHHHHHHHHh-
Confidence 567888888888888899999999999999887542 2355678899999998853 3344444443322
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.+.--|+|| +|+|+.... -+.+.-.....-+..+.+-.+.|-|-...|-.+..+.+
T Consensus 190 --------------------ypg~~ar~~--Y~e~La~qg--r~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~ 245 (251)
T COG4700 190 --------------------YPGPQARIY--YAEMLAKQG--RLREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERL 245 (251)
T ss_pred --------------------CCCHHHHHH--HHHHHHHhc--chhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 122346665 789987642 11222233333444555555556555555555544433
No 462
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=28.67 E-value=4e+02 Score=33.29 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=71.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 000196 1576 ASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA 1655 (1874)
Q Consensus 1576 a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~ 1655 (1874)
|.-.-..|.++-|.+.|..|....|+ +|-.......++-..+ +..+|++.+++.+.-.. +
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~P~----------N~~~~~~~~~i~~~~n---k~~~A~e~~~kal~l~P---~---- 372 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQPD----------NPYYLELAGDILLEAN---KAKEAIERLKKALALDP---N---- 372 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCC---C----
Confidence 33344457788888888888776552 3444444445555555 57899999998664211 1
Q ss_pred cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1656 ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1656 ~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
..--.-.+|..|++.|+ +.+.+...+..+.-+|++...|..+|..|.++
T Consensus 373 --------~~~l~~~~a~all~~g~-------------~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~ 421 (484)
T COG4783 373 --------SPLLQLNLAQALLKGGK-------------PQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL 421 (484)
T ss_pred --------ccHHHHHHHHHHHhcCC-------------hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 00112335666666555 34667777788888999999999999998874
No 463
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=28.55 E-value=1.1e+02 Score=21.81 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1694 IPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
.+.+...|.+++...|.....|..++.|
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 5677889999999999999999999876
No 464
>PRK05255 hypothetical protein; Provisional
Probab=28.44 E-value=6.6e+02 Score=27.09 Aligned_cols=114 Identities=14% Similarity=0.169 Sum_probs=65.4
Q ss_pred chHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHH
Q 000196 1476 NGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQAL 1555 (1874)
Q Consensus 1476 ~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~i 1555 (1874)
+..++.|+...++-...|.+.|-..++-++--=.+.|.|......-.+........-+-.+.|++||-.- +-+..+.+
T Consensus 50 ~e~L~~Ai~ea~ri~~~eA~RRqlqyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~~--~d~al~e~ 127 (171)
T PRK05255 50 DEDLRDAILEAQRITSHEARRRQLQYIGKLMRNEDVEPIRAALDKLKNKHNQETARFHKLERWRDRLLAE--GDDALTEF 127 (171)
T ss_pred CHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhCCHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhC--CHHHHHHH
Confidence 3478888888877655788999888777665545555555433221111111222334558899999752 33455555
Q ss_pred HHHHHhhcCCccc---HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 000196 1556 LAVRALVLPPTED---VETWLKFASLCRKSGRISQARSTLVKLL 1596 (1874)
Q Consensus 1556 L~~R~~vl~~~e~---~~~wlk~a~laRk~g~~~~a~~~L~~l~ 1596 (1874)
+..- |.-| ...|++-|+--+..++...+.+.|++.+
T Consensus 128 ~~~~-----P~~DrQ~LRqLiR~A~kE~~~~kppk~~R~LF~~L 166 (171)
T PRK05255 128 LEEY-----PDADRQQLRQLIRNAKKEKAQNKPPKSFRELFQYL 166 (171)
T ss_pred HHHC-----chhhHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 5322 4444 4445555555555566666666666544
No 465
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=28.39 E-value=3.4e+02 Score=28.67 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhcC-------CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCc----------hhHH
Q 000196 149 EVEFQVKMALDWLRG-------DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPT----------LAVR 211 (1874)
Q Consensus 149 ~v~~~~~~~~~~l~~-------~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~----------~~VR 211 (1874)
-+.+++-++.+|-.. .+...|+.+=..++..++++.-..|.||...+++.....|..-+ ..++
T Consensus 56 ~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~~~~~~~~~~~~~~~L~ 135 (153)
T PF08146_consen 56 TFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQFNSSKTESKSKSWELW 135 (153)
T ss_pred hhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 456677788888742 23334556666677789999999999999999998777664333 3566
Q ss_pred HHHHHHHHHHHH
Q 000196 212 ERAVEALRACLR 223 (1874)
Q Consensus 212 ~aA~~al~~~~~ 223 (1874)
.....+|..|+.
T Consensus 136 ~~vL~~L~~~F~ 147 (153)
T PF08146_consen 136 RLVLSTLQKCFL 147 (153)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 466
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=28.14 E-value=78 Score=24.25 Aligned_cols=27 Identities=22% Similarity=0.063 Sum_probs=22.5
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHH
Q 000196 195 FVDAIWVALRDPTLAVRERAVEALRAC 221 (1874)
Q Consensus 195 il~~i~~~l~D~~~~VR~aA~~al~~~ 221 (1874)
.++.+...+.++++.++..|+.||+.+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 566677778888999999999999875
No 467
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.13 E-value=2.9e+02 Score=27.43 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=46.6
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHH--HHHHHHHH----HhhCCCChHhHHHHHHHHHH
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRR--HLIQLLTY----LEQSSADNKCREESAKLLGC 668 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~--~l~~~l~~----l~~~~~~~~~r~~a~~~L~~ 668 (1874)
.++++.|..-+++.++.+...|+.++..++++++..+...+.. ++.+++.. ......+...|+.+..++..
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 3577888888889999999999999999999998766655533 23333221 11111244566666665543
No 468
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=28.03 E-value=6.7e+02 Score=25.72 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchh-hHHHHHHHHHHHH
Q 000196 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVT-KREVAVSTLGQVV 758 (1874)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~-~r~~A~~~Lg~l~ 758 (1874)
...+..+.+++..+ ++.+...++..++.+...+|..|...+ ..++..+...+.+..... +|..++..+..-.
T Consensus 36 k~a~r~l~krl~~~-----n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNK-----NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 45667778888864 788888889999999999998775544 356777777776544333 7888888877776
Q ss_pred hhccc
Q 000196 759 QSTGY 763 (1874)
Q Consensus 759 ~~~~~ 763 (1874)
.....
T Consensus 111 ~~f~~ 115 (133)
T smart00288 111 DAFKN 115 (133)
T ss_pred HHHcC
Confidence 66543
No 469
>PF14961 BROMI: Broad-minded protein
Probab=27.93 E-value=1.1e+03 Score=33.25 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=57.5
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000196 1030 LPALIRLFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF 1103 (1874)
Q Consensus 1030 lp~l~~~~~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f 1103 (1874)
+..|.+-++.+.|.++|..|++.|...-.+ +.-.++-+.+-..|...|.++|+.+...++...+.+....+-.+
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 455667777778999999999999877655 33346788888888899999999999999998887766554443
No 470
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=27.72 E-value=1.5e+03 Score=29.66 Aligned_cols=155 Identities=15% Similarity=0.142 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHHHc-----chhhhHHHHHHHHHHHHHHhh---cchhHHHHHHHHHhH-hHhhhChhhHHHHHHHHH
Q 000196 254 VHSIHGSLLAVGELLRN-----TGEFMMSRYREVAEIVLRYLE---HRDRLVRLSITSLLP-RIAHFLRDRFVTNYLKIC 324 (1874)
Q Consensus 254 ~~~~~~al~~l~~ll~~-----~~~~~~~~~~~i~~~ll~~~~---~~~~~vr~~~~~~i~-~la~~~~~~f~~~yl~~~ 324 (1874)
.+.+||-+.++.+|+.- ..+.-.|.-.+.++.+..... .++...-.+ .-++. .||...++-|.++|+..+
T Consensus 145 ~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~a-fPL~t~lLCvS~~e~F~~~W~~~~ 223 (552)
T PF14222_consen 145 SDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNVA-FPLVTTLLCVSPKEFFLSNWLPSL 223 (552)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhhH-HHHHHHHHhcCcHHHHHHHHHHHH
Confidence 46889988888888761 223334444444444432211 123332222 22222 244455566776554368
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHhhch-----h---hhhhhhHHHHHHHHHhhcCCCCCC--Cc-hhHHHHHHHHHHh
Q 000196 325 MNHILTVLRIPAERDSGFIALGEMAGALD-----G---ELFHYLPTITSHLREAIAPRRGKP--SL-EALACVGNIARAM 393 (1874)
Q Consensus 325 ~~~Ll~~L~~~~~R~~a~~alg~la~~v~-----~---~~~p~l~~i~~~l~~~L~~~~~~~--~~-~a~~~l~~l~~~~ 393 (1874)
+..+..-|+....|..++.|+..+.-..= + .....++.|+.. .+..++... .. ..++.+..+...+
T Consensus 224 i~~~~~klKdk~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~---lfp~~kk~~i~~D~~~~~~lv~ii~~I 300 (552)
T PF14222_consen 224 IESLISKLKDKETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKL---LFPKGKKGWIPRDPEPLNPLVQIIRFI 300 (552)
T ss_pred HHHHHhhcCChhhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH---HccCCCCcccCCChhhhhhHHHHHHhH
Confidence 88888888766778899999988653321 1 112233333333 333322211 22 5667777777788
Q ss_pred CCCchHHH-HHHHHHHHhcC
Q 000196 394 GPVMEPHV-RGLLDIMFSAG 412 (1874)
Q Consensus 394 g~~~~p~l-~~ll~~ll~~~ 412 (1874)
|..-..|. +.++=+|+..+
T Consensus 301 ~~~~~df~~~~iI~~LL~~~ 320 (552)
T PF14222_consen 301 GYKHLDFAFRNIIFPLLNVS 320 (552)
T ss_pred hhhCcchHHHHHHHHHHccc
Confidence 86544554 66665666543
No 471
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.71 E-value=6.3e+02 Score=29.66 Aligned_cols=102 Identities=20% Similarity=0.133 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHH
Q 000196 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLL 1773 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlL 1773 (1874)
..+....|.+|.++.|++...|-.||..-...- + . +--..+-.-|-+++... ........-|=
T Consensus 172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a------~-~----~~ta~a~~ll~~al~~D------~~~iral~lLA 234 (287)
T COG4235 172 ASDALLAYRNALRLAGDNPEILLGLAEALYYQA------G-Q----QMTAKARALLRQALALD------PANIRALSLLA 234 (287)
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------C-C----cccHHHHHHHHHHHhcC------CccHHHHHHHH
Confidence 467889999999999999999999986633211 1 1 11224455566666663 22333444444
Q ss_pred HHHHhcCCcHHHHHHHHhcccCCChh-hHHHHHHHHHHhc
Q 000196 1774 TLWFNHGATEEVQIALQKGFAHVNIN-TWLVVLPQIIARI 1812 (1874)
Q Consensus 1774 tLwf~~g~~~~v~~~~~~~~~~ip~~-~wl~~ipQLiari 1812 (1874)
.--|..|+..+-....+.-++.+|.. .|..+|-+.|++-
T Consensus 235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 55688888888777888888888865 7888888888776
No 472
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=27.38 E-value=74 Score=38.61 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=38.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcC
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMG 1441 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~ 1441 (1874)
..+|.+|.|+.|+....-.-......+ ....-+||.++.||+|+.-...+..+..+.- +..++...+|-+|-.||
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~~~s~~---~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ei--e~~ei~~iaa~sa~~l~ 405 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKIIGTTD---STLRCRLRSLHGLARWREALSTAEMMLSNEI--EDEEVLTVAAGSADALQ 405 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhhhcCCc---hHHHHHHHhhhchhhHHHHHHHHHHHhcccc--CChhheeeecccHHHHh
Confidence 345667776666654422110000111 1224467778888888877777766543311 11233334455555555
Q ss_pred Chhh
Q 000196 1442 EWDQ 1445 (1874)
Q Consensus 1442 ~Wd~ 1445 (1874)
-.|+
T Consensus 406 ~~d~ 409 (831)
T PRK15180 406 LFDK 409 (831)
T ss_pred HHHH
Confidence 4443
No 473
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=27.21 E-value=5.1e+02 Score=25.84 Aligned_cols=103 Identities=21% Similarity=0.224 Sum_probs=52.3
Q ss_pred HHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcc---ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc
Q 000196 643 IQLLTYLEQSSADNKCREESAKLLGCLIRNCER---LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG 719 (1874)
Q Consensus 643 ~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~---~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~ 719 (1874)
.+++..+..++.+.+..+.|......+++.-+. .+..|...++..++..=..-. .+.-...+.+++.++ +...
T Consensus 6 rDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~-~~~Fe~~R~~alval---~v~~ 81 (114)
T PF10193_consen 6 RDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFD-IENFEELRQNALVAL---VVAA 81 (114)
T ss_dssp HHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT---TTTTHHHHHHHHHH---HHHS
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCC-ccCHHHHHHHHHHHH---HHHh
Confidence 345555554412455567889999999988665 788888888888877533211 112334555555544 3333
Q ss_pred ccchhhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHH
Q 000196 720 GFGMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQ 756 (1874)
Q Consensus 720 g~~~~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~ 756 (1874)
+.. +.|.+++.+-. .-+-..|...+.+|+.
T Consensus 82 P~~-------~~~~L~~~f~~~~~Sl~qR~~iL~~l~~ 112 (114)
T PF10193_consen 82 PEK-------VAPYLTEEFFSGDYSLQQRMSILSALSL 112 (114)
T ss_dssp GGG-------HHH-HHHHHTTS---THHHHHHHHHHHH
T ss_pred hHH-------HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 333 44445555432 2245577777777764
No 474
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=26.92 E-value=3.2e+02 Score=29.04 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh--chHHHHHHHHH
Q 000196 124 DREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV--HVAEFVDAIWV 201 (1874)
Q Consensus 124 d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~--~l~~il~~i~~ 201 (1874)
..+++..|.-++.++....+....+. +...++.+-.+........|+.++..+--..|+.-.. .-..+++.+..
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~----~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~ 93 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEK----ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLP 93 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHH
Confidence 57888888888888864322222222 2222222222333335677778888877777765332 22356666666
Q ss_pred hhc--CCchhHHHHHHHHHHHHH
Q 000196 202 ALR--DPTLAVRERAVEALRACL 222 (1874)
Q Consensus 202 ~l~--D~~~~VR~aA~~al~~~~ 222 (1874)
.+. .++..+..++++++....
T Consensus 94 ~~~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 94 LASRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp HHH-CTS-HHHHHHHHHHHHHHT
T ss_pred HHhcccCCHHHHHHHHHHHHHHH
Confidence 666 667888899999887654
No 475
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=26.84 E-value=32 Score=35.80 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=72.4
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhc
Q 000196 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQ 1368 (1874)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg 1368 (1874)
..+.....+.+.....+.|+|......+ .......+.|+.+|.+.+.++.+.-.++.. .+++........++.|
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~-----~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENK-----ENNPDLHTLLLELYIKYDPYEKLLEFLKTS-NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTST-----C-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhccc-----ccCHHHHHHHHHHHHhcCCchHHHHHcccc-cccCHHHHHHHHHhcc
Confidence 4455666667778888899998774321 234677789999999998878887777632 3356555556789999
Q ss_pred CHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhh
Q 000196 1369 RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKE 1416 (1874)
Q Consensus 1369 ~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1874)
.|++|.-.|.+.- + ....++++..++.|+...+++..
T Consensus 85 l~~~a~~Ly~~~~----~-------~~~al~i~~~~~~~~~a~e~~~~ 121 (143)
T PF00637_consen 85 LYEEAVYLYSKLG----N-------HDEALEILHKLKDYEEAIEYAKK 121 (143)
T ss_dssp SHHHHHHHHHCCT----T-------HTTCSSTSSSTHCSCCCTTTGGG
T ss_pred hHHHHHHHHHHcc----c-------HHHHHHHHHHHccHHHHHHHHHh
Confidence 9999999997521 1 12233346666666555555544
No 476
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=26.32 E-value=4.2e+02 Score=32.00 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=44.7
Q ss_pred CCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc
Q 000196 572 DADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV 634 (1874)
Q Consensus 572 d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v 634 (1874)
..++++-..++.-++.+. + . -.+.+++|..-++..++.|...|+.+++.++.+|+..+
T Consensus 23 ~enW~~IlDvCD~v~~~~--~--~-~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~ 80 (462)
T KOG2199|consen 23 SENWSLILDVCDKVGSDP--D--G-GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRF 80 (462)
T ss_pred cccHHHHHHHHHhhcCCC--c--c-cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHH
Confidence 346777777777775322 1 1 23689999999999999999999999999999997654
No 477
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=26.11 E-value=1.1e+03 Score=27.51 Aligned_cols=75 Identities=25% Similarity=0.401 Sum_probs=57.5
Q ss_pred hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccccc-chhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000196 1023 DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQVT-GHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGE 1101 (1874)
Q Consensus 1023 ~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~~~-~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~ 1101 (1874)
++|-..++--++.+++++ +..+|..+++.|..+.+.+++. ++.+.++.++.|.+++ +....|+++|-.++..-|.
T Consensus 183 P~~~~~~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t---~~~~eAL~VLd~~v~~s~s 258 (262)
T PF14225_consen 183 PDHEFQILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQT---DLWMEALEVLDEIVTRSGS 258 (262)
T ss_pred chhHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCC---ccHHHHHHHHHHHHhhccc
Confidence 455555666677777654 6789999999999999987754 4888899999999986 4567788888776665554
No 478
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=26.09 E-value=2.2e+03 Score=31.09 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=108.1
Q ss_pred CCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1564 PPTEDVETWLKFASLCRKSGRISQARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1564 ~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
+|.+ .-.||++...--.-+..+-|.+.-.++++ ++.....+ .-.+-++++.+.-.-|.. ..-.+..++.
T Consensus 1454 sPNS-Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeE------KLNiWiA~lNlEn~yG~e---esl~kVFeRA 1523 (1710)
T KOG1070|consen 1454 SPNS-SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEE------KLNIWIAYLNLENAYGTE---ESLKKVFERA 1523 (1710)
T ss_pred CCCc-chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHH------HHHHHHHHHhHHHhhCcH---HHHHHHHHHH
Confidence 4544 67899888777777777766666665553 22221111 123445666665555521 1111122222
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
.+.++ --++|++|....... ++.++..+.|+...+-..+-.+.|..||.|-
T Consensus 1524 cqycd-----------------------~~~V~~~L~~iy~k~------ek~~~A~ell~~m~KKF~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1524 CQYCD-----------------------AYTVHLKLLGIYEKS------EKNDEADELLRLMLKKFGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHhcc-----------------------hHHHHHHHHHHHHHh------hcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 21111 113466666655443 4556777777777766667889999999885
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC--hhh
Q 000196 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN--INT 1800 (1874)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip--~~~ 1800 (1874)
.+.=+ .+.....+..|+++. - .....+-+-++-.|=|.||+.+--...++.-+..=| .+.
T Consensus 1575 l~~ne-------~~aa~~lL~rAL~~l----P-------k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDl 1636 (1710)
T KOG1070|consen 1575 LRQNE-------AEAARELLKRALKSL----P-------KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDL 1636 (1710)
T ss_pred hcccH-------HHHHHHHHHHHHhhc----c-------hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhH
Confidence 53211 111223344444332 1 235677888899999999998765555665565554 567
Q ss_pred HHHHHHHHHHh
Q 000196 1801 WLVVLPQIIAR 1811 (1874)
Q Consensus 1801 wl~~ipQLiar 1811 (1874)
|.-.|=|=+-+
T Consensus 1637 W~VYid~eik~ 1647 (1710)
T KOG1070|consen 1637 WSVYIDMEIKH 1647 (1710)
T ss_pred HHHHHHHHHcc
Confidence 88777765543
No 479
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=3.8e+02 Score=32.78 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=13.7
Q ss_pred HHHHHhccchhhhhhhccchh
Q 000196 1292 GALAEKCRAFAKALHYKEMEF 1312 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~ 1312 (1874)
++.....+.|.+|+.|+|...
T Consensus 222 gk~~~A~~~Yerav~~l~~~~ 242 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRR 242 (397)
T ss_pred chHHHHHHHHHHHHHHhhccc
Confidence 444555567778888887654
No 480
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=25.94 E-value=2.8e+02 Score=26.00 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=47.5
Q ss_pred HHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHH
Q 000196 641 HLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTV 712 (1874)
Q Consensus 641 ~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l 712 (1874)
+|.++...+.+. .+.+.|+....++..++...++.++.=-+.++.++-....+. +..+...++.++
T Consensus 18 fL~Pf~~i~~~~-~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~-----~e~lv~~af~~~ 83 (86)
T PF09324_consen 18 FLKPFEYIMSNN-PSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDN-----DESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHhcc-CcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCC-----CccHHHHHHHHH
Confidence 333444434455 677889999999999999998888887888888888877764 455555555554
No 481
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.84 E-value=1.1e+02 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1695 PEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1695 ~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
+-+-.-|+..+...| ..|.|..||.|
T Consensus 4 dRAR~IyeR~v~~hp-~~k~WikyAkF 29 (32)
T PF02184_consen 4 DRARSIYERFVLVHP-EVKNWIKYAKF 29 (32)
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHh
Confidence 445667888888776 47999999987
No 482
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=25.81 E-value=3.8e+02 Score=28.50 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHH
Q 000196 1477 GTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALL 1556 (1874)
Q Consensus 1477 ~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL 1556 (1874)
..++.|+...++-...+.+.|-..++-++--=.+.|.|......-.+........-+..+.|++||-. .+-+....++
T Consensus 40 e~l~~Ai~~a~ri~~~~arrRQ~qyIGKLmR~~d~e~I~~al~~~~~~~~~~~~~~h~lE~wRdrLi~--~~~~al~e~~ 117 (157)
T PF04751_consen 40 EELRDAIMEARRITSHEARRRQLQYIGKLMREEDPEAIRAALDALKNKSQQETARFHRLERWRDRLIA--DDDSALTEFL 117 (157)
T ss_dssp HHHHHHHHHGGG--SHHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHh--CChHHHHHHH
Confidence 46788888777766778889988888776654455555443321101000112233456899999975 5556666665
Q ss_pred HHHHhhcCCccc---HHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 000196 1557 AVRALVLPPTED---VETWLKFASLCRKSGRISQARSTLVKLL 1596 (1874)
Q Consensus 1557 ~~R~~vl~~~e~---~~~wlk~a~laRk~g~~~~a~~~L~~l~ 1596 (1874)
.-. |.-| ...++.-|+-.++.+....+.+.|++.+
T Consensus 118 ~~~-----p~~D~Q~LRqLiR~a~ke~~~~k~~ka~R~Lfr~L 155 (157)
T PF04751_consen 118 AEY-----PDADRQQLRQLIRNARKEREANKPPKAYRELFRYL 155 (157)
T ss_dssp HHS-----TTS-HHHHHHHHHHHHHHHHTT---HHHHHHHHHH
T ss_pred HHC-----ChhhHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 443 4334 4556666666666677777777776654
No 483
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.65 E-value=1.2e+03 Score=27.83 Aligned_cols=147 Identities=12% Similarity=0.144 Sum_probs=90.1
Q ss_pred HHHHHHHhCCC-CHHHHHH---HHHHHHhhhcCCcCccchHH-HH----HHHHHHHHHhhCCCChHhHHHHHHHHHHHHH
Q 000196 601 LSAIFAALNDE-DFDVREY---AISVAGRLSEKNPAYVLPAL-RR----HLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1874)
Q Consensus 601 l~~L~~~l~D~-~~~VR~~---a~~~l~~l~~~~p~~v~p~l-~~----~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1874)
+..++.++.|. ...+|.. ++.+|..|+-... +...+ ++ .+..++ ++++ +++..-++++.++.-++-
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds--vKs~IV~~gg~~~ii~l~--~~h~-~~p~Vi~~~~a~i~~l~L 359 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS--VKSTIVEKGGLDKIITLA--LRHS-DDPLVIQEVMAIISILCL 359 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc--hHHHHHHhcChHHHHHHH--HHcC-CChHHHHHHHHHHHHHHh
Confidence 67778888873 4566644 4555555554331 11111 11 122222 2455 677788888888888887
Q ss_pred hCccccccchHH-HHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHH
Q 000196 672 NCERLIRPYIAP-IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVA 750 (1874)
Q Consensus 672 ~~~~~~~py~~~-il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A 750 (1874)
..|+.-..+++. .-...++.++.- .....|..+++..|-.++..+.+.-.+++..=+..++..-... +...+..|
T Consensus 360 R~pdhsa~~ie~G~a~~avqAmkah---P~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~-h~tce~~a 435 (461)
T KOG4199|consen 360 RSPDHSAKAIEAGAADLAVQAMKAH---PVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKAN-HETCEAAA 435 (461)
T ss_pred cCcchHHHHHhcchHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhc-CccHHHHH
Confidence 777665555552 445556666643 1255677888999999998887877888877777777665543 34556555
Q ss_pred HHHHHH
Q 000196 751 VSTLGQ 756 (1874)
Q Consensus 751 ~~~Lg~ 756 (1874)
-.+|-.
T Consensus 436 kaALRD 441 (461)
T KOG4199|consen 436 KAALRD 441 (461)
T ss_pred HHHHHh
Confidence 555544
No 484
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=25.57 E-value=97 Score=23.68 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000196 1069 LVHHLKLVLDGKNDELRKDAVDALCCLA 1096 (1874)
Q Consensus 1069 ii~~l~~~l~~~~~~l~~~al~~L~~l~ 1096 (1874)
.+++|+..+..++++++..+..+|..|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3445555565556667777766666553
No 485
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=25.47 E-value=1.1e+03 Score=28.30 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.+.+.+.+|..|++.+|++|.+.+.=|-.+-
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL 83 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYL 83 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 4688999999999999999999887775543
No 486
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=25.38 E-value=1.4e+03 Score=28.34 Aligned_cols=148 Identities=14% Similarity=0.178 Sum_probs=74.2
Q ss_pred HHHHhhhcCCChhh--hhhHHHHHhHhhccccCcchhHHHHHH-HHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchH
Q 000196 72 DRISGLLESNDAAE--NLGALRAIDELIDVALGENASKVSKFS-NYMRTVFEVKRDREILVLASKVLGHLARAGGAMTAD 148 (1874)
Q Consensus 72 ~~i~~l~~s~~~~~--r~~~i~ai~~li~~~~~~~~~~~~~~~-~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~ 148 (1874)
+.+..++.+|+... |.-+.-.++.+..-. +..++.|.. .-+.++-....-++..+..+-.++.+-++.......
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~ae---N~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAE---NRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhh---hhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34446677777665 666666666664332 222222221 111111111223466666666777766653322223
Q ss_pred HHHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchh-chHH-HHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 149 EVEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNV-HVAE-FVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 149 ~v~~-~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~-~l~~-il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
+|.. .++.++=|.+.....-.||+|+ +|+.++.+....... .+.. +-+-++......+...|.-||-|...+..
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~AL-AL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCAL-ALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHH-HhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 3332 3556667776444567888875 566666553322111 1111 12223333334567788888877765543
No 487
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.10 E-value=5.3e+02 Score=30.14 Aligned_cols=52 Identities=8% Similarity=-0.017 Sum_probs=28.5
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
|.+.|+|++|+..|+..+...++.....+....+-.|+..+|+++.-....+
T Consensus 190 y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 190 NYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566667777777766665444332223344445556666666655544433
No 488
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=24.82 E-value=1.1e+03 Score=27.09 Aligned_cols=179 Identities=14% Similarity=0.056 Sum_probs=102.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...+-.-+..+-+.|+++.|...+.++....|.. + -.+...+..+......++ ..+|+...+++++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~------~a~~a~l~la~ayy~~~~---y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-P------YSQQVQLDLIYAYYKNAD---LPLAQAAIDRFIRLN 99 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-h------HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhC
Confidence 356667788999999999999999999988765532 0 012334566666667774 789999999988753
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcC-----------C-CCCCCCHHHHHHHHHHHHhhcccch--
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALP-----------P-GLDDESIPEIIAAYRNATQCATKWG-- 1712 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~-----------~-~~~~~~~~~i~~~y~~a~~~~~~~~-- 1712 (1874)
... +-...+++++|.=...+. . ..+.....+.++.|+..++..|+..
T Consensus 100 P~~-------------------~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 100 PTH-------------------PNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred cCC-------------------CchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 321 123445555553211110 0 0112224566788888998888764
Q ss_pred -HHHHHHHHHHHHHHHh-------hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHH
Q 000196 1713 -KAWHSWALFNTAVMSH-------YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEE 1784 (1874)
Q Consensus 1713 -k~w~~wA~~n~~~~~~-------~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~ 1784 (1874)
.+........+++.++ |.+++ .| +.|+.-|-.-|.- -.++++.-+.+.++..-..+.|...+
T Consensus 161 ~~A~~rl~~l~~~la~~e~~ia~~Y~~~~------~y-~AA~~r~~~v~~~---Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 161 TDATKRLVFLKDRLAKYELSVAEYYTKRG------AY-VAVVNRVEQMLRD---YPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC------ch-HHHHHHHHHHHHH---CCCCchHHHHHHHHHHHHHHcCChHH
Confidence 3444444444443332 22222 23 2344333333322 12345666667777777777776644
No 489
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=24.48 E-value=1.1e+02 Score=26.55 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=23.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHhC
Q 000196 1232 AGFVSCWSQLNATSQKHLVQSLEMAFS 1258 (1874)
Q Consensus 1232 ~aF~s~w~~l~~~~~~~l~~~l~~~l~ 1258 (1874)
..|=..|..+++++|+.+++.++..++
T Consensus 39 VlFE~~W~~~~~~ek~~m~~~l~~~l~ 65 (65)
T TIGR03092 39 VLFEAIWKHANEQEKDEMLETLEQGVK 65 (65)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcC
Confidence 578889999999999999999987653
No 490
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=23.94 E-value=1.2e+03 Score=27.20 Aligned_cols=200 Identities=12% Similarity=0.140 Sum_probs=103.4
Q ss_pred HHHHhhcCccch-hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc--hh-hH-HHHHHHHHHHHHhhccCCC
Q 000196 178 KEMAENASTVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TR-WR-VQWYYRMFEATQDGLGRNA 252 (1874)
Q Consensus 178 ~~la~~~p~~~~-~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~-~~-~~~~~~i~~~~~~~l~~~~ 252 (1874)
..+.++.|..=. +..+.+.+.+++|++.+... +.+.+.+..+...-.++- .. .+ .-.+-..+|.+...+.+++
T Consensus 47 ~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~--e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~ 124 (262)
T PF14225_consen 47 DVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTY--ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPN 124 (262)
T ss_pred HHHHHhCCccccCCCchhHHHHHhCccCCCCcH--HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccc
Confidence 345666666543 67888999999999987642 346666666654422211 11 11 1234566788888777664
Q ss_pred C---hhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHH-hhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHH
Q 000196 253 P---VHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRY-LEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHI 328 (1874)
Q Consensus 253 ~---~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~-~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~L 328 (1874)
+ ..........+..+.+..+ .+.+.+++...-.. .++++.-+++ + +.+-.+.|.+.|--+++.+|
T Consensus 125 ~i~~~~~~~~~A~~La~~a~~~~---~~~La~il~~ya~~~fr~~~dfl~~----v----~~~l~~~f~P~~~~~~l~~L 193 (262)
T PF14225_consen 125 PIQPDQECIEIAEALAQVAEAQG---LPNLARILSSYAKGRFRDKDDFLSQ----V----VSYLREAFFPDHEFQILTFL 193 (262)
T ss_pred cccccHHHHHHHHHHHHHHHhCC---CccHHHHHHHHHhcCCCCHHHHHHH----H----HHHHHHHhCchhHHHHHHHH
Confidence 1 1223344445555554221 12333333322111 0122222222 2 22223445444556778888
Q ss_pred HHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhC
Q 000196 329 LTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMG 394 (1874)
Q Consensus 329 l~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g 394 (1874)
+..|.+.. -|...+..|..+-..+.-. .|+.++++..+...+++. -..+|++.+..+....|
T Consensus 194 l~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~~~~dlispllrlL~t~---~~~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 194 LGLLENGPPWLRRKTLQILKVLLPHVDMR-SPHGADLISPLLRLLQTD---LWMEALEVLDEIVTRSG 257 (262)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHhccccCC-CCcchHHHHHHHHHhCCc---cHHHHHHHHHHHHhhcc
Confidence 88887643 3667777777766665432 345555555555555332 12355555555554444
No 491
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.87 E-value=1.2e+03 Score=27.01 Aligned_cols=152 Identities=18% Similarity=0.111 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcc
Q 000196 1573 LKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVI 1652 (1874)
Q Consensus 1573 lk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~ 1652 (1874)
=+.+=.|--.|+.++|.+.+.+|..--| +.++|..-++-++=++|. -.+|++.++.++.+-. .
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp----------~S~RV~~lkam~lEa~~~---~~~A~e~y~~lL~ddp---t- 118 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFP----------GSKRVGKLKAMLLEATGN---YKEAIEYYESLLEDDP---T- 118 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCC----------CChhHHHHHHHHHHHhhc---hhhHHHHHHHHhccCc---c-
Confidence 3555566677999999999998764323 346887777777777884 6899999998875421 0
Q ss_pred ccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhcc
Q 000196 1653 QSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLR 1732 (1874)
Q Consensus 1653 ~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~ 1732 (1874)
+ ...+ -+|++--... |. ..++++...+-++..++...+||..|..+...
T Consensus 119 --------------~--~v~~-KRKlAilka~---GK----~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~------- 167 (289)
T KOG3060|consen 119 --------------D--TVIR-KRKLAILKAQ---GK----NLEAIKELNEYLDKFMNDQEAWHELAEIYLSE------- 167 (289)
T ss_pred --------------h--hHHH-HHHHHHHHHc---CC----cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-------
Confidence 0 0111 1333333221 21 23566666667778888899999998776542
Q ss_pred CCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHH
Q 000196 1733 GLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEV 1785 (1874)
Q Consensus 1733 ~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v 1785 (1874)
.-...|+-||=..+-.. ....-...|+=-+.+..|+.+.+
T Consensus 168 -------~~f~kA~fClEE~ll~~------P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 168 -------GDFEKAAFCLEELLLIQ------PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred -------hHHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHhhHHHH
Confidence 12234555665555443 33444566777777777765443
No 492
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=23.66 E-value=1e+03 Score=31.12 Aligned_cols=183 Identities=22% Similarity=0.249 Sum_probs=95.0
Q ss_pred HHHHhCCCCCChH---------HHHHHHHHHHHhhhC-------CCCCCCCHHHHHHHHHhccchhhhhhhccchhcccc
Q 000196 1253 LEMAFSSPNIPPE---------ILATLLNLAEFMEHD-------EKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGAR 1316 (1874)
Q Consensus 1253 l~~~l~~~~~p~~---------i~~~ll~l~e~m~~~-------~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~ 1316 (1874)
+..+|..|..|+. .++-..+|+|-|-.. +.|.|==-++|+++|.+-. +|.-.|..|-.-.
T Consensus 644 ld~Il~~pE~pnk~~ii~~~ikslrD~~~Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl----~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 644 LDKILLTPENPNKTCIIEVMIKSLRDVMNLVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKL----ALDTAEHAFVRCG 719 (1189)
T ss_pred HhhHhcCcCCCCcceEEEEEehhhhhHHHHHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhhHhhhhhhhc
Confidence 3456666666642 234445555544321 2233433467888886544 4455566664321
Q ss_pred cccCCCCcHHHHHHHHHHHhhcCC---hHHHhHHHHHHhc-hhhhh---hcHHHHHHhcCHHHHHHHHHHHHhccCCCch
Q 000196 1317 SNRMDANPVAVVEALIHINNQLHQ---HEAAVGILTYAQK-ELDVQ---LKESWYEKLQRWDDALKAYTNKASQASNPHI 1389 (1874)
Q Consensus 1317 ~~~~~~~~~~~~e~L~~iy~~L~~---~D~~~Gi~~~~~~-~~~~~---~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~ 1389 (1874)
. =...+.+..|..|-++=.+ --+.+|=+..+.+ .++.. +....+.++|+|-..+..|...- ++.++
T Consensus 720 d----Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~---~d~dD 792 (1189)
T KOG2041|consen 720 D----YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGG---SDDDD 792 (1189)
T ss_pred c----ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccC---CCcch
Confidence 1 0112344555555443322 2234444443322 12221 12224789999999988886532 12111
Q ss_pred -hHH-hHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCC
Q 000196 1390 -VLE-ATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDG 1456 (1874)
Q Consensus 1390 -~~~-~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~ 1456 (1874)
..+ ....+-.-...+-+|++-.++-..- . +. .-.++|.+++.+++.++.....++++
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~-~--~~-------e~~~ecly~le~f~~LE~la~~Lpe~ 851 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYC-G--DT-------ENQIECLYRLELFGELEVLARTLPED 851 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c--ch-------HhHHHHHHHHHhhhhHHHHHHhcCcc
Confidence 111 2223334456677787766543221 1 11 13478999999999999998888764
No 493
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=23.64 E-value=1.9e+03 Score=29.42 Aligned_cols=224 Identities=17% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHH-HHHHHh-------------hcCCcccHHHHHHHH
Q 000196 1511 LEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQAL-LAVRAL-------------VLPPTEDVETWLKFA 1576 (1874)
Q Consensus 1511 leEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~i-L~~R~~-------------vl~~~e~~~~wlk~a 1576 (1874)
+|+++.+. +...-..|....+.|..+|+.+ +..++. +.--....+-|-+.+
T Consensus 300 ~~d~ilsl---------------m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~a 364 (799)
T KOG4162|consen 300 IEDAILSL---------------MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLA 364 (799)
T ss_pred HHHHHHHH---------------HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHH
Q ss_pred HHHHhcCChhHHHHHHHHHhcCC--CCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 000196 1577 SLCRKSGRISQARSTLVKLLQYD--PETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQS 1654 (1874)
Q Consensus 1577 ~laRk~g~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~ 1654 (1874)
.----.|....|.+.+....... | ..+.+.+=-+|+....-+ ..++++++-.+.++...
T Consensus 365 ls~saag~~s~Av~ll~~~~~~~~~p----------s~~s~~Lmasklc~e~l~--~~eegldYA~kai~~~~------- 425 (799)
T KOG4162|consen 365 LSYSAAGSDSKAVNLLRESLKKSEQP----------SDISVLLMASKLCIERLK--LVEEGLDYAQKAISLLG------- 425 (799)
T ss_pred HHHHHhccchHHHHHHHhhcccccCC----------CcchHHHHHHHHHHhchh--hhhhHHHHHHHHHHHhh-------
Q ss_pred ccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHH-----HHHHHHHhhcccchHHHHHHHHHHHHHHHhh
Q 000196 1655 AASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEII-----AAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729 (1874)
Q Consensus 1655 ~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~-----~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~ 1729 (1874)
.....+.+++|+.+|-=........+..+..+.. +.|++|++++|+++.+-|+.|+.|.+
T Consensus 426 ----------~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~----- 490 (799)
T KOG4162|consen 426 ----------GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAE----- 490 (799)
T ss_pred ----------hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-----
Q ss_pred hccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1730 TLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1730 ~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
..-+..|+.+--++++++ ++++.....-|--++-..+...+-.+.+...+..-|
T Consensus 491 ---------~R~l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 491 ---------QRQLTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred ---------HHhHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
No 494
>PF13041 PPR_2: PPR repeat family
Probab=23.58 E-value=1.4e+02 Score=24.28 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=24.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1874)
.|-+.|+|++|++.|++-.+.+-.|+. .....+|+++
T Consensus 12 ~~~~~~~~~~a~~l~~~M~~~g~~P~~--~Ty~~li~~~ 48 (50)
T PF13041_consen 12 GYCKAGKFEEALKLFKEMKKRGIKPDS--YTYNILINGL 48 (50)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHH
Confidence 478889999999999887655444542 2334555554
No 495
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=23.31 E-value=1.5e+03 Score=28.91 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+.+....|-++|+.|+ ++||++++++++++..
T Consensus 259 ~y~KrRLAmCarklGr---~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGR---LREAIKMFRDLLKEFP 290 (539)
T ss_pred hhhHHHHHHHHHHhCC---hHHHHHHHHHHHhhCC
Confidence 4556678889999995 7899999999987653
No 496
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=23.24 E-value=1.8e+03 Score=29.00 Aligned_cols=214 Identities=12% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcC----------------------CcccHHHHHHHHHHHHhcCChhHHH
Q 000196 1532 AIIRNMWTERIQGTKRNVEVWQALLAVRALVLP----------------------PTEDVETWLKFASLCRKSGRISQAR 1589 (1874)
Q Consensus 1532 ~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~----------------------~~e~~~~wlk~a~laRk~g~~~~a~ 1589 (1874)
+.+.-...+-++....+...|.+-|..|...+. .+.....|+.+....-++|+.....
T Consensus 43 k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR 122 (835)
T KOG2047|consen 43 KQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTR 122 (835)
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHH
Q ss_pred HHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchh
Q 000196 1590 STLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVP 1669 (1874)
Q Consensus 1590 ~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1669 (1874)
.++.+++. .++...+.++=--|.|++-..| -.+-++..++..++ ...+..+
T Consensus 123 ~tfdrALr--------aLpvtqH~rIW~lyl~Fv~~~~---lPets~rvyrRYLk------------------~~P~~~e 173 (835)
T KOG2047|consen 123 RTFDRALR--------ALPVTQHDRIWDLYLKFVESHG---LPETSIRVYRRYLK------------------VAPEARE 173 (835)
T ss_pred HHHHHHHH--------hCchHhhccchHHHHHHHHhCC---ChHHHHHHHHHHHh------------------cCHHHHH
Q ss_pred hHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHH
Q 000196 1670 LIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGY 1749 (1874)
Q Consensus 1670 l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f 1749 (1874)
-.-..+.+.+.|.... .....++..=+...+.-+..++.|+ -+.+++.+.......-.....+...+.-|
T Consensus 174 eyie~L~~~d~~~eaa------~~la~vln~d~f~sk~gkSn~qlw~----elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAA------QRLATVLNQDEFVSKKGKSNHQLWL----ELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred HHHHHHHhccchHHHH------HHHHHhcCchhhhhhcccchhhHHH----HHHHHHHhCcchhcccCHHHHHHhhcccC
Q ss_pred HHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000196 1750 FHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1874)
Q Consensus 1750 ~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1874)
++...--.+-|---+..-|..+..-+..++++.+|
T Consensus 244 ------------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v 278 (835)
T KOG2047|consen 244 ------------TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV 278 (835)
T ss_pred ------------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
No 497
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=22.93 E-value=2.1e+03 Score=29.71 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=36.3
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHH
Q 000196 164 DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRE 212 (1874)
Q Consensus 164 ~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~ 212 (1874)
+++-..|.++...|..++++|.+...--+-.+++++.+--..|.+..-+
T Consensus 484 ~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~s~~~~l~e 532 (1697)
T KOG3687|consen 484 DKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSLSPPPELEE 532 (1697)
T ss_pred cchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcccCCCcchhh
Confidence 4555788999999999999999877777778888877654445444433
No 498
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=22.53 E-value=7.6e+02 Score=32.87 Aligned_cols=108 Identities=15% Similarity=0.061 Sum_probs=64.7
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHhhcC---ccchhch---HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh
Q 000196 158 LDWLRGDRVEYRRFAAVLILKEMAENAS---TVFNVHV---AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR 231 (1874)
Q Consensus 158 ~~~l~~~~~~~~r~aA~~~l~~la~~~p---~~~~~~l---~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1874)
+.+|+..++...=.|+.=+|..++-+.+ ..+..-+ ...+|.|+..|+-.+..|-.+++-+|+.+...+..
T Consensus 524 l~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn---- 599 (717)
T KOG1048|consen 524 LLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN---- 599 (717)
T ss_pred HHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh----
Confidence 3334333333344454445555544422 2333222 34568888999999999989999999987654443
Q ss_pred hHHHHHHHHHHHHHhhccCCC-----ChhHHHHHHHHHHHHHHc
Q 000196 232 WRVQWYYRMFEATQDGLGRNA-----PVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 232 ~~~~~~~~i~~~~~~~l~~~~-----~~~~~~~al~~l~~ll~~ 270 (1874)
+...-...++.+.+.|.+.. +++..-+.+..+.+++..
T Consensus 600 -k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~ 642 (717)
T KOG1048|consen 600 -KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK 642 (717)
T ss_pred -hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH
Confidence 33333445555555554432 378888888889888863
No 499
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=22.43 E-value=9.9e+02 Score=25.73 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=53.3
Q ss_pred HHHHHHHHHHH-HcchhhhHHHHHHHHHHHHHHhhcch-hHHHHHHHHHhHhHhhh-----ChhhHHHHHHHHHHHHHHH
Q 000196 258 HGSLLAVGELL-RNTGEFMMSRYREVAEIVLRYLEHRD-RLVRLSITSLLPRIAHF-----LRDRFVTNYLKICMNHILT 330 (1874)
Q Consensus 258 ~~al~~l~~ll-~~~~~~~~~~~~~i~~~ll~~~~~~~-~~vr~~~~~~i~~la~~-----~~~~f~~~yl~~~~~~Ll~ 330 (1874)
..|..++..|- ...++|+.|.++.+.+.+...+.++. ..+..=++.+-+.++.+ .+.. + .++..+++.+..
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~-~-~~vk~L~~~mv~ 137 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMR-V-DLVKELLPKMVK 137 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccH-H-HHHHHHHHHHHH
Confidence 55667777765 35678999999999988888776653 23332222222222211 1111 1 133444444444
Q ss_pred hh----cCCCCcchHHHHHHHHHhhchhhh
Q 000196 331 VL----RIPAERDSGFIALGEMAGALDGEL 356 (1874)
Q Consensus 331 ~L----~~~~~R~~a~~alg~la~~v~~~~ 356 (1874)
.+ .+..+.+...+++..+...+.+++
T Consensus 138 Sv~elV~~g~E~~~l~rgl~~~e~~v~~~~ 167 (174)
T PF04510_consen 138 SVKELVERGMEVGFLRRGLRDFESFVSRQM 167 (174)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 43 345555666677766666665544
No 500
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=21.97 E-value=1.1e+03 Score=26.13 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh-hhccchhhHHHHH
Q 000196 915 LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE-FRTHLPVILPCCI 993 (1874)
Q Consensus 915 ~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~-f~~yl~~llp~ll 993 (1874)
.-..++..++.+...+|.+..|++.+++..+.+.-...+.+ ....+=.++++...++|-+ |-. ++|.-+
T Consensus 16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~------~~~~~e~~lgaAi~amGpe~vL~----~lPLnl 85 (198)
T PF08161_consen 16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFS------FRKELEQVLGAAIRAMGPEQVLS----ILPLNL 85 (198)
T ss_pred HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcc------hHHHHHHHHHHHHHHCCHHHHHH----HCCCCc
Confidence 34567788899999999998899999999988876554311 1225666777766776643 332 223111
Q ss_pred HhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcC-------CCcHHHHHHHHHHH--------Hhhcc
Q 000196 994 QVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRLFKV-------DAPVDIRRAAIETL--------TRLIP 1058 (1874)
Q Consensus 994 ~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~-------~~~~~vr~~ai~~l--------~~l~~ 1058 (1874)
+. ..+....|.-.+.++.-.. -+..+.-|...++|..-.+... ..+.+.| ..+++ ..+|.
T Consensus 86 ~~--~~~~~~~raWLLPlLr~~i-~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak--~~~~l~~QlWslLP~FC~ 160 (198)
T PF08161_consen 86 DN--ADDSQPGRAWLLPLLRDHI-RNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAK--IYETLVQQLWSLLPGFCN 160 (198)
T ss_pred cC--CCcCCcccchhHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHH--HHHHHHHHHHHHhHHhcC
Confidence 11 1111222333344444322 2445666666677765544321 1122222 12222 22333
Q ss_pred c-ccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000196 1059 R-VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095 (1874)
Q Consensus 1059 ~-~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l 1095 (1874)
. .|+......+-..|...|.+ .+++|..+...|-.|
T Consensus 161 ~P~D~~~~F~~~a~~L~~~L~~-~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 161 YPTDLAESFPSFAKLLGNALYD-QPDLRPIICQALRRL 197 (198)
T ss_pred CcccHHHHHHHHHHHHHHHHhc-CcchHHHHHHHHHHH
Confidence 2 34444335556666667754 578888877777655
Done!