Query 000196
Match_columns 1874
No_of_seqs 495 out of 2426
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 00:21:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/000196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u6g_C TIP120 protein, CAND1; 100.0 4.6E-33 1.6E-37 400.4 76.2 932 111-1117 8-1055(1230)
2 4fdd_A Transportin-1; heat rep 100.0 2.2E-32 7.5E-37 378.1 59.1 758 166-1133 26-820 (852)
3 1qgr_A Protein (importin beta 100.0 1E-30 3.6E-35 364.8 66.1 779 154-1097 3-871 (876)
4 2bpt_A Importin beta-1 subunit 100.0 1.7E-30 5.8E-35 361.9 64.6 758 110-1116 5-832 (861)
5 1u6g_C TIP120 protein, CAND1; 100.0 9E-31 3.1E-35 376.6 63.4 959 24-1116 86-1151(1230)
6 2bpt_A Importin beta-1 subunit 100.0 5E-30 1.7E-34 357.2 66.9 774 21-1057 1-856 (861)
7 4fdd_A Transportin-1; heat rep 100.0 1.1E-30 3.9E-35 360.9 50.6 655 21-799 125-820 (852)
8 1qgr_A Protein (importin beta 100.0 4E-28 1.4E-32 338.7 64.7 782 111-1058 3-871 (876)
9 1b3u_A Protein (protein phosph 99.9 7.5E-23 2.6E-27 271.5 44.3 574 20-758 6-586 (588)
10 1b3u_A Protein (protein phosph 99.9 1E-21 3.5E-26 260.6 44.7 563 73-802 14-586 (588)
11 1wa5_C Importin alpha RE-expor 99.8 4.3E-14 1.5E-18 196.9 63.3 671 110-998 6-772 (960)
12 2x1g_F Cadmus; transport prote 99.7 2.5E-14 8.7E-19 200.3 54.3 437 614-1108 436-917 (971)
13 2x19_B Importin-13; nuclear tr 99.7 1.8E-13 6.2E-18 191.9 51.8 401 615-1080 423-876 (963)
14 1wa5_C Importin alpha RE-expor 99.7 3.8E-12 1.3E-16 177.3 63.8 736 70-998 7-869 (960)
15 2x1g_F Cadmus; transport prote 99.7 4.1E-12 1.4E-16 177.9 61.5 792 23-988 6-919 (971)
16 2x19_B Importin-13; nuclear tr 99.7 9.2E-12 3.1E-16 174.6 62.4 749 70-950 26-874 (963)
17 1ibr_B P95, importin beta-1 su 99.6 4.1E-13 1.4E-17 171.7 39.1 428 604-1116 6-458 (462)
18 1ibr_B P95, importin beta-1 su 99.6 9.7E-14 3.3E-18 177.6 29.9 380 26-428 3-439 (462)
19 3m1i_C Exportin-1; heat repeat 99.6 1.5E-11 5.3E-16 172.6 51.0 420 614-1100 428-881 (1049)
20 3m1i_C Exportin-1; heat repeat 99.5 2E-09 6.8E-14 151.2 60.5 590 19-739 11-698 (1049)
21 3now_A UNC-45 protein, SD10334 99.4 4.4E-09 1.5E-13 137.4 52.4 673 23-803 5-737 (810)
22 3ibv_A Exportin-T; karyopherin 99.4 3.1E-09 1.1E-13 145.3 52.4 435 615-1105 414-932 (980)
23 2vgl_B AP-2 complex subunit be 99.4 1.5E-10 5E-15 151.6 37.2 498 157-757 18-530 (591)
24 2vgl_B AP-2 complex subunit be 99.4 8.8E-11 3E-15 153.7 34.3 428 72-585 89-527 (591)
25 4hat_C Exportin-1; heat repeat 99.4 8.2E-10 2.8E-14 150.9 43.7 394 655-1116 357-804 (1023)
26 1w63_A Adapter-related protein 99.4 2.8E-10 9.7E-15 149.3 36.9 429 73-585 74-572 (618)
27 2jdq_A Importin alpha-1 subuni 99.3 1.6E-11 5.4E-16 156.3 21.6 356 509-931 27-393 (450)
28 2qk2_A LP04448P; mini spindles 99.3 3.5E-11 1.2E-15 138.4 20.8 190 163-363 25-219 (242)
29 2jdq_A Importin alpha-1 subuni 99.3 9.8E-11 3.3E-15 149.0 25.6 357 26-393 22-392 (450)
30 2qk1_A Protein STU2; STU2P, XM 99.3 3.6E-11 1.2E-15 137.5 17.8 196 163-363 26-234 (249)
31 3ibv_A Exportin-T; karyopherin 99.3 4.5E-08 1.5E-12 133.9 50.5 271 514-801 455-766 (980)
32 1w63_A Adapter-related protein 99.3 6.6E-09 2.3E-13 136.3 40.5 472 157-803 75-577 (618)
33 4hat_C Exportin-1; heat repeat 99.3 2.9E-07 9.9E-12 125.9 57.8 778 108-1000 15-912 (1023)
34 1wa5_B Importin alpha subunit; 99.3 5.5E-11 1.9E-15 154.4 20.4 356 508-931 93-460 (530)
35 3now_A UNC-45 protein, SD10334 99.3 2E-08 6.8E-13 131.3 44.0 360 505-928 333-737 (810)
36 4b8j_A Importin subunit alpha- 99.3 1.8E-10 6E-15 149.7 24.7 360 23-393 73-445 (528)
37 2qk2_A LP04448P; mini spindles 99.3 5.1E-11 1.7E-15 137.1 17.1 195 74-321 20-216 (242)
38 4b8j_A Importin subunit alpha- 99.3 6.6E-11 2.3E-15 153.7 19.5 357 508-931 80-446 (528)
39 1wa5_B Importin alpha subunit; 99.2 4.1E-10 1.4E-14 146.2 24.5 357 24-393 87-459 (530)
40 2vgl_A Adaptor protein complex 99.2 1.7E-07 5.9E-12 122.2 46.3 456 24-532 11-551 (621)
41 2z6g_A B-catenin; FULL-length, 99.1 4.7E-09 1.6E-13 141.5 30.3 489 508-1102 156-668 (780)
42 2z6h_A Catenin beta-1, beta-ca 99.1 5.7E-09 2E-13 138.6 30.1 486 195-803 15-527 (644)
43 3gjx_A Exportin-1; transport, 99.1 1.4E-07 4.8E-12 128.0 43.1 373 677-1116 411-830 (1073)
44 2z6g_A B-catenin; FULL-length, 99.1 6.1E-09 2.1E-13 140.4 29.9 304 25-352 116-430 (780)
45 2z6h_A Catenin beta-1, beta-ca 99.1 3.7E-08 1.3E-12 130.7 36.0 491 507-1103 19-533 (644)
46 3gjx_A Exportin-1; transport, 99.0 7.1E-05 2.4E-09 101.7 63.7 225 19-270 23-276 (1073)
47 1jdh_A Beta-catenin; beta-cate 99.0 1.9E-08 6.5E-13 130.7 27.7 483 507-1095 22-528 (529)
48 2vgl_A Adaptor protein complex 99.0 3.4E-07 1.1E-11 119.5 37.5 507 168-802 54-588 (621)
49 2qk1_A Protein STU2; STU2P, XM 99.0 6E-09 2.1E-13 119.1 16.1 189 122-315 27-225 (249)
50 1jdh_A Beta-catenin; beta-cate 98.9 1.3E-07 4.6E-12 122.7 30.5 308 71-391 19-339 (529)
51 3tpo_A Importin subunit alpha- 98.9 4.5E-08 1.5E-12 126.4 25.4 355 25-391 77-449 (529)
52 3ul1_B Importin subunit alpha- 98.9 2.7E-08 9.1E-13 127.7 22.6 355 26-392 59-431 (510)
53 1oyz_A Hypothetical protein YI 98.9 3E-07 1E-11 108.1 27.9 189 569-802 31-220 (280)
54 1oyz_A Hypothetical protein YI 98.8 2.9E-07 9.9E-12 108.3 23.4 238 481-799 39-278 (280)
55 3ul1_B Importin subunit alpha- 98.8 7.4E-08 2.5E-12 123.6 19.0 355 503-929 59-431 (510)
56 3tpo_A Importin subunit alpha- 98.8 1.8E-07 6.1E-12 120.8 21.5 350 508-928 82-449 (529)
57 2iw3_A Elongation factor 3A; a 98.7 4E-07 1.4E-11 120.5 23.9 305 23-351 13-325 (986)
58 3ltj_A Alpharep-4; protein eng 98.7 5.5E-07 1.9E-11 99.9 20.0 192 494-758 6-197 (201)
59 4hxt_A De novo protein OR329; 98.6 3.6E-07 1.2E-11 105.5 15.8 234 563-806 5-244 (252)
60 2iw3_A Elongation factor 3A; a 98.5 1.1E-06 3.9E-11 116.3 19.4 278 125-419 28-313 (986)
61 4hxt_A De novo protein OR329; 98.5 2.1E-06 7.1E-11 99.0 19.3 237 72-316 5-247 (252)
62 3ltj_A Alpharep-4; protein eng 98.5 4.4E-06 1.5E-10 92.5 19.4 176 569-802 22-197 (201)
63 3ltm_A Alpha-REP4; protein eng 98.4 3E-06 1E-10 94.7 17.5 175 570-802 28-202 (211)
64 3oc3_A Helicase MOT1, MOT1; re 98.4 4.1E-07 1.4E-11 107.2 10.1 227 25-309 175-403 (800)
65 4db8_A Armadillo-repeat protei 98.4 2.4E-06 8.3E-11 98.5 17.0 221 122-350 23-251 (252)
66 3ltm_A Alpha-REP4; protein eng 98.4 4.4E-06 1.5E-10 93.3 18.3 183 506-761 23-205 (211)
67 4db8_A Armadillo-repeat protei 98.4 1.7E-06 5.7E-11 99.9 14.7 231 72-310 15-251 (252)
68 3a6p_A Exportin-5; exportin-5, 98.4 0.0061 2.1E-07 85.8 51.8 230 105-352 7-278 (1204)
69 4db6_A Armadillo repeat protei 98.3 2.9E-06 1E-10 94.7 13.1 194 600-802 13-208 (210)
70 3a6p_A Exportin-5; exportin-5, 98.3 0.00046 1.6E-08 97.1 38.1 485 573-1116 25-632 (1204)
71 2db0_A 253AA long hypothetical 98.3 0.00011 3.9E-09 73.9 22.2 184 598-807 31-214 (253)
72 3l6x_A Catenin delta-1; cateni 98.2 0.00015 5.2E-09 91.7 28.0 345 18-373 42-456 (584)
73 3opb_A SWI5-dependent HO expre 98.2 0.0036 1.2E-07 80.4 40.0 568 110-786 132-760 (778)
74 1xm9_A Plakophilin 1; armadill 98.2 9.7E-05 3.3E-09 92.9 25.4 401 601-1060 4-451 (457)
75 4db6_A Armadillo repeat protei 98.2 1.5E-05 5E-10 88.9 15.9 193 111-310 13-209 (210)
76 1xm9_A Plakophilin 1; armadill 98.2 7.5E-05 2.6E-09 94.0 23.5 314 26-350 4-406 (457)
77 1w3b_A UDP-N-acetylglucosamine 98.1 0.0013 4.6E-08 80.7 33.2 357 1291-1795 5-368 (388)
78 1xqr_A HSPBP1 protein; armadil 98.1 4.6E-05 1.6E-09 88.8 18.0 195 599-801 81-285 (296)
79 3opb_A SWI5-dependent HO expre 98.1 0.024 8.1E-07 73.0 42.6 226 570-802 466-727 (778)
80 4ady_A RPN2, 26S proteasome re 98.1 0.00015 5.1E-09 94.9 22.5 247 83-375 451-701 (963)
81 4ady_A RPN2, 26S proteasome re 98.0 0.0015 5.1E-08 85.6 30.0 291 504-910 394-699 (963)
82 2db0_A 253AA long hypothetical 98.0 0.0013 4.6E-08 66.4 22.2 216 68-310 31-246 (253)
83 2xpi_A Anaphase-promoting comp 98.0 0.006 2E-07 79.8 36.2 167 1567-1794 405-578 (597)
84 1xqr_A HSPBP1 protein; armadil 97.9 0.00034 1.2E-08 81.4 20.7 179 84-270 55-239 (296)
85 3nmz_A APC variant protein; pr 97.9 0.00078 2.7E-08 83.3 24.7 360 19-392 27-451 (458)
86 2xpi_A Anaphase-promoting comp 97.9 0.011 3.8E-07 77.2 37.6 165 1569-1794 339-503 (597)
87 3l6x_A Catenin delta-1; cateni 97.9 0.00069 2.3E-08 85.7 23.1 356 682-1096 47-475 (584)
88 3ieg_A DNAJ homolog subfamily 97.8 0.022 7.6E-07 68.3 35.9 324 1290-1724 8-352 (359)
89 1w3b_A UDP-N-acetylglucosamine 97.8 0.011 3.8E-07 72.4 32.0 334 1290-1722 38-383 (388)
90 3nmz_A APC variant protein; pr 97.7 0.0044 1.5E-07 76.6 26.6 221 124-352 213-452 (458)
91 2of3_A ZYG-9; multifunctional 97.7 0.00094 3.2E-08 75.0 18.2 175 123-316 58-242 (266)
92 2y4t_A DNAJ homolog subfamily 97.7 0.069 2.4E-06 66.6 37.5 139 1567-1756 209-359 (450)
93 1xi4_A Clathrin heavy chain; a 97.6 0.0066 2.3E-07 82.0 27.7 301 1274-1631 1041-1347(1630)
94 2y4t_A DNAJ homolog subfamily 97.6 0.078 2.7E-06 66.0 37.3 325 1290-1724 31-375 (450)
95 3fp2_A TPR repeat-containing p 97.6 0.027 9.4E-07 72.2 33.0 413 1289-1797 29-459 (537)
96 3fp2_A TPR repeat-containing p 97.5 0.021 7.1E-07 73.4 30.7 140 1568-1756 343-492 (537)
97 3hym_B Cell division cycle pro 97.5 0.01 3.5E-07 70.4 25.6 124 1568-1723 192-315 (330)
98 2of3_A ZYG-9; multifunctional 97.5 0.0013 4.4E-08 73.9 15.9 186 165-362 58-248 (266)
99 1vsy_5 Proteasome activator BL 97.5 0.48 1.6E-05 64.1 43.6 187 600-800 761-963 (997)
100 2gw1_A Mitochondrial precursor 97.5 0.082 2.8E-06 67.1 35.3 141 1567-1756 336-479 (514)
101 4ffb_C Protein STU2; tubulin f 97.5 0.00096 3.3E-08 77.7 15.3 193 75-314 15-216 (278)
102 3ieg_A DNAJ homolog subfamily 97.5 0.16 5.6E-06 60.5 36.1 139 1567-1756 186-336 (359)
103 3nmw_A APC variant protein; AR 97.4 0.0071 2.4E-07 72.3 22.0 228 83-315 98-339 (354)
104 3nmw_A APC variant protein; AR 97.4 0.0066 2.2E-07 72.6 20.8 223 125-354 98-338 (354)
105 3hym_B Cell division cycle pro 97.4 0.063 2.2E-06 63.4 29.8 267 1363-1756 31-300 (330)
106 2gw1_A Mitochondrial precursor 97.3 0.047 1.6E-06 69.4 29.2 121 1567-1722 370-493 (514)
107 4ffb_C Protein STU2; tubulin f 97.2 0.001 3.6E-08 77.3 11.7 188 163-356 19-218 (278)
108 3b2a_A TON_1937, putative unch 97.2 0.014 4.9E-07 62.1 18.1 186 22-222 31-217 (265)
109 1xi4_A Clathrin heavy chain; a 97.1 1.9 6.6E-05 58.9 42.3 381 1329-1853 1053-1434(1630)
110 3oc3_A Helicase MOT1, MOT1; re 97.1 0.0069 2.4E-07 72.2 15.9 221 507-800 179-401 (800)
111 3b2a_A TON_1937, putative unch 97.0 0.038 1.3E-06 59.0 19.1 183 71-269 35-218 (265)
112 3vtx_A MAMA; tetratricopeptide 97.0 0.051 1.8E-06 58.1 21.2 170 1567-1797 3-172 (184)
113 1fch_A Peroxisomal targeting s 96.5 0.28 9.7E-06 58.8 25.7 117 1568-1725 216-343 (368)
114 1te4_A Conserved protein MTH18 96.4 0.0011 3.9E-08 67.0 2.8 115 506-668 16-130 (131)
115 3uq3_A Heat shock protein STI1 96.4 0.32 1.1E-05 54.7 23.9 112 1568-1720 138-255 (258)
116 1te4_A Conserved protein MTH18 96.4 0.001 3.4E-08 67.4 2.2 51 569-627 20-70 (131)
117 3grl_A General vesicular trans 96.4 0.49 1.7E-05 59.3 26.1 325 10-349 7-393 (651)
118 2pl2_A Hypothetical conserved 96.4 0.13 4.4E-06 56.8 19.5 168 1568-1797 4-182 (217)
119 4gyw_A UDP-N-acetylglucosamine 96.3 0.05 1.7E-06 71.7 18.2 163 1567-1790 7-169 (723)
120 3tjz_B Coatomer subunit gamma; 96.2 0.13 4.5E-06 60.6 19.0 276 42-356 43-322 (355)
121 4eqf_A PEX5-related protein; a 96.2 0.4 1.4E-05 57.6 24.2 115 1568-1723 212-338 (365)
122 3u4t_A TPR repeat-containing p 96.1 0.44 1.5E-05 54.2 23.2 126 1568-1723 141-266 (272)
123 3cv0_A Peroxisome targeting si 96.1 0.74 2.5E-05 53.8 25.6 116 1568-1724 171-298 (327)
124 3l9t_A Putative uncharacterize 96.1 0.14 4.8E-06 55.4 16.5 135 69-222 71-206 (240)
125 1b89_A Protein (clathrin heavy 96.1 0.12 4.1E-06 62.6 17.9 104 1296-1414 14-117 (449)
126 3sf4_A G-protein-signaling mod 95.9 1.8 6.2E-05 52.3 28.7 128 1569-1725 227-360 (406)
127 2ond_A Cleavage stimulation fa 95.8 0.82 2.8E-05 53.4 23.8 205 1567-1836 48-273 (308)
128 3tjz_B Coatomer subunit gamma; 95.7 0.034 1.2E-06 65.6 10.9 240 506-798 108-348 (355)
129 4a1s_A PINS, partner of inscut 95.7 3.7 0.00013 49.7 30.4 122 1569-1719 263-384 (411)
130 1vsy_5 Proteasome activator BL 95.7 0.032 1.1E-06 75.4 11.9 153 66-223 798-966 (997)
131 2h6f_A Protein farnesyltransfe 95.5 0.92 3.1E-05 54.8 23.3 151 1568-1778 96-246 (382)
132 3mkr_A Coatomer subunit epsilo 95.5 2.7 9.3E-05 48.5 26.7 253 1292-1644 6-263 (291)
133 2pl2_A Hypothetical conserved 95.5 0.63 2.2E-05 51.2 20.0 159 1567-1787 37-206 (217)
134 3u0r_A Apoptosis inhibitor 5; 95.5 0.3 1E-05 58.3 17.4 120 479-631 42-166 (507)
135 2q7f_A YRRB protein; TPR, prot 95.4 0.49 1.7E-05 52.6 19.3 169 1567-1796 55-223 (243)
136 3u4t_A TPR repeat-containing p 95.4 1.2 4.1E-05 50.5 22.9 172 1569-1798 3-174 (272)
137 3vtx_A MAMA; tetratricopeptide 95.4 0.25 8.6E-06 52.5 15.8 135 1567-1756 37-171 (184)
138 4gco_A Protein STI-1; structur 95.2 0.21 7.2E-06 49.6 13.6 120 1559-1720 4-123 (126)
139 3ro2_A PINS homolog, G-protein 95.2 1.8 6.1E-05 50.5 24.4 114 1568-1710 222-335 (338)
140 2ho1_A Type 4 fimbrial biogene 95.2 2.9 9.9E-05 46.5 25.1 170 1568-1798 36-207 (252)
141 3mkr_A Coatomer subunit epsilo 95.2 6 0.0002 45.5 30.6 119 1567-1724 128-246 (291)
142 3grl_A General vesicular trans 95.2 1.2 4.2E-05 55.7 22.7 205 595-801 118-392 (651)
143 4i17_A Hypothetical protein; T 95.2 0.5 1.7E-05 52.3 18.2 156 1567-1756 40-210 (228)
144 2ho1_A Type 4 fimbrial biogene 95.0 1.2 4.3E-05 49.6 21.2 172 1567-1797 69-240 (252)
145 2vq2_A PILW, putative fimbrial 95.0 2.1 7E-05 46.5 22.6 169 1567-1795 6-176 (225)
146 1lrv_A LRV, leucine-rich repea 95.0 0.006 2E-07 68.2 1.3 16 509-524 57-72 (244)
147 4abn_A Tetratricopeptide repea 94.9 0.85 2.9E-05 57.1 21.3 189 1565-1798 98-290 (474)
148 3qky_A Outer membrane assembly 94.9 1 3.5E-05 50.9 20.1 174 1567-1779 13-198 (261)
149 2ond_A Cleavage stimulation fa 94.8 1.9 6.6E-05 50.2 22.8 175 1567-1797 97-272 (308)
150 4g1t_A Interferon-induced prot 94.8 2.2 7.7E-05 53.0 24.6 116 1288-1406 54-187 (472)
151 3uq3_A Heat shock protein STI1 94.7 1.1 3.9E-05 50.0 19.9 173 1568-1795 4-202 (258)
152 3as5_A MAMA; tetratricopeptide 94.7 0.48 1.6E-05 49.8 15.6 150 1290-1452 13-169 (186)
153 3as5_A MAMA; tetratricopeptide 94.7 1 3.4E-05 47.2 18.1 165 1568-1793 7-171 (186)
154 3sf4_A G-protein-signaling mod 94.6 6.2 0.00021 47.4 27.5 112 1290-1406 14-142 (406)
155 4i17_A Hypothetical protein; T 94.5 2 6.9E-05 47.2 20.9 160 1568-1780 6-167 (228)
156 1elw_A TPR1-domain of HOP; HOP 94.4 0.73 2.5E-05 43.9 15.0 114 1568-1722 3-116 (118)
157 2q7f_A YRRB protein; TPR, prot 94.4 1.8 6.1E-05 47.8 20.3 169 1568-1797 22-190 (243)
158 2ooe_A Cleavage stimulation fa 94.3 16 0.00053 46.2 36.8 205 1567-1836 270-495 (530)
159 2lni_A Stress-induced-phosphop 94.2 1.1 3.7E-05 44.0 16.2 117 1567-1724 14-130 (133)
160 2vq2_A PILW, putative fimbrial 94.2 2.8 9.7E-05 45.4 21.2 165 1567-1789 40-205 (225)
161 2vyi_A SGTA protein; chaperone 94.2 1 3.4E-05 43.9 15.7 116 1568-1724 11-126 (131)
162 4gyw_A UDP-N-acetylglucosamine 93.9 0.58 2E-05 61.6 16.8 149 1290-1451 14-169 (723)
163 1na0_A Designed protein CTPR3; 93.9 1.3 4.4E-05 42.6 15.8 116 1567-1723 7-122 (125)
164 4gco_A Protein STI-1; structur 93.9 0.27 9.3E-06 48.7 10.6 103 1290-1401 18-125 (126)
165 3tt9_A Plakophilin-2; cell adh 93.9 0.27 9.3E-06 54.4 11.4 193 600-801 9-227 (233)
166 2h6f_A Protein farnesyltransfe 93.8 2.3 8E-05 51.2 20.8 141 1567-1756 129-270 (382)
167 4eqf_A PEX5-related protein; a 93.6 1.4 4.9E-05 52.6 18.5 180 1568-1798 98-279 (365)
168 3sz7_A HSC70 cochaperone (SGT) 93.5 0.69 2.3E-05 48.0 13.6 114 1567-1721 9-122 (164)
169 4atg_A TAF6; transcription, TF 93.5 1.8 6.3E-05 45.7 16.1 135 576-715 23-160 (196)
170 2dba_A Smooth muscle cell asso 93.3 1.1 3.7E-05 45.1 14.3 117 1567-1721 26-142 (148)
171 1vsy_4 Proteasome activator BL 93.2 29 0.00099 45.6 32.9 335 67-408 230-662 (799)
172 1fch_A Peroxisomal targeting s 93.2 4.3 0.00015 48.2 21.9 184 1567-1797 96-282 (368)
173 4atg_A TAF6; transcription, TF 92.9 1.6 5.5E-05 46.1 14.7 101 701-803 59-162 (196)
174 3upv_A Heat shock protein STI1 92.9 1.8 6E-05 42.3 14.8 114 1568-1722 3-122 (126)
175 4gcn_A Protein STI-1; structur 92.8 1.1 3.7E-05 44.3 13.1 108 1569-1710 8-115 (127)
176 3cv0_A Peroxisome targeting si 92.6 7.5 0.00026 44.9 22.6 178 1567-1797 53-237 (327)
177 3urz_A Uncharacterized protein 92.6 0.97 3.3E-05 49.2 13.6 116 1568-1724 3-134 (208)
178 3ro2_A PINS homolog, G-protein 92.5 11 0.00038 43.4 24.0 158 1290-1452 10-208 (338)
179 4gcn_A Protein STI-1; structur 92.5 0.4 1.4E-05 47.5 9.3 93 1289-1387 12-116 (127)
180 1elr_A TPR2A-domain of HOP; HO 92.4 2.5 8.6E-05 40.9 15.3 121 1568-1723 3-123 (131)
181 4abn_A Tetratricopeptide repea 92.4 1.5 5.2E-05 54.8 16.8 142 1567-1756 135-288 (474)
182 4ga2_A E3 SUMO-protein ligase 92.1 0.3 1E-05 50.1 8.1 108 1576-1724 4-111 (150)
183 1xnf_A Lipoprotein NLPI; TPR, 91.9 2.7 9.2E-05 47.4 16.8 165 1580-1802 16-180 (275)
184 2vyi_A SGTA protein; chaperone 91.8 0.88 3E-05 44.3 11.0 108 1290-1406 17-129 (131)
185 3nf1_A KLC 1, kinesin light ch 91.7 11 0.00038 43.0 22.3 127 1326-1452 28-178 (311)
186 1vsy_4 Proteasome activator BL 91.7 29 0.001 45.5 27.8 262 107-372 332-667 (799)
187 3q49_B STIP1 homology and U bo 91.5 4.5 0.00015 39.8 16.1 117 1567-1724 7-128 (137)
188 3ulq_A Response regulator aspa 91.3 23 0.00078 42.2 25.4 178 1575-1794 109-292 (383)
189 4ga2_A E3 SUMO-protein ligase 91.3 2.5 8.5E-05 43.1 14.1 114 1567-1721 29-143 (150)
190 4a1s_A PINS, partner of inscut 91.3 5.3 0.00018 48.3 19.7 195 1568-1793 47-250 (411)
191 3qky_A Outer membrane assembly 91.2 1.2 4.2E-05 50.3 12.9 124 1290-1416 20-173 (261)
192 3nf1_A KLC 1, kinesin light ch 91.1 1.2 4E-05 51.6 12.9 161 1290-1451 32-219 (311)
193 3l9t_A Putative uncharacterize 91.1 1.3 4.5E-05 48.0 11.6 144 501-680 70-216 (240)
194 1a17_A Serine/threonine protei 91.1 4.1 0.00014 41.6 15.8 113 1568-1721 12-124 (166)
195 2fo7_A Synthetic consensus TPR 91.1 1.7 5.7E-05 42.4 12.2 113 1290-1411 6-123 (136)
196 3gyz_A Chaperone protein IPGC; 90.8 1.4 4.9E-05 45.1 11.5 105 1567-1712 34-138 (151)
197 2fo7_A Synthetic consensus TPR 90.7 7.4 0.00025 37.5 16.7 131 1570-1755 2-132 (136)
198 1xnf_A Lipoprotein NLPI; TPR, 90.6 6.6 0.00023 44.1 18.5 168 1567-1797 41-208 (275)
199 2xcb_A PCRH, regulatory protei 90.6 2.2 7.4E-05 42.9 12.7 107 1567-1714 16-122 (142)
200 2pzi_A Probable serine/threoni 90.5 1.2 4.1E-05 58.7 13.4 134 1567-1756 431-564 (681)
201 1a17_A Serine/threonine protei 90.4 2.1 7.2E-05 43.9 12.8 117 1289-1412 17-138 (166)
202 1upk_A MO25 protein; transfera 90.3 5.3 0.00018 45.7 16.2 193 598-803 77-283 (341)
203 2fbn_A 70 kDa peptidylprolyl i 90.3 4.9 0.00017 42.9 16.0 127 1568-1725 37-169 (198)
204 2qfc_A PLCR protein; TPR, HTH, 90.2 24 0.00083 40.1 23.1 202 1569-1814 75-288 (293)
205 2lni_A Stress-induced-phosphop 90.2 1.6 5.4E-05 42.7 11.1 107 1290-1405 21-132 (133)
206 2xev_A YBGF; tetratricopeptide 90.2 6 0.0002 38.3 15.4 114 1571-1719 4-117 (129)
207 2vgx_A Chaperone SYCD; alterna 90.1 3.3 0.00011 42.0 13.6 105 1567-1712 19-123 (148)
208 3qou_A Protein YBBN; thioredox 90.1 3.5 0.00012 47.4 15.4 167 1567-1793 115-282 (287)
209 3tt9_A Plakophilin-2; cell adh 90.0 7 0.00024 43.0 16.8 107 115-223 13-124 (233)
210 2vsy_A XCC0866; transferase, g 89.9 5.1 0.00017 51.3 18.5 138 1567-1756 21-158 (568)
211 1b89_A Protein (clathrin heavy 89.8 2.4 8.3E-05 51.2 13.8 320 1363-1853 41-361 (449)
212 3u0r_A Apoptosis inhibitor 5; 89.7 41 0.0014 40.4 26.7 121 71-206 67-189 (507)
213 1hxi_A PEX5, peroxisome target 89.7 1.9 6.4E-05 42.1 10.9 105 1568-1713 16-120 (121)
214 3edt_B KLC 2, kinesin light ch 89.7 2.7 9.4E-05 47.4 14.2 126 1290-1415 48-193 (283)
215 3ulq_A Response regulator aspa 89.7 11 0.00039 45.0 20.5 159 1290-1452 189-364 (383)
216 3sz7_A HSC70 cochaperone (SGT) 89.3 2 6.7E-05 44.4 11.4 110 1290-1406 16-130 (164)
217 3upv_A Heat shock protein STI1 89.0 2.1 7.1E-05 41.8 10.8 88 1290-1383 9-101 (126)
218 1qqe_A Vesicular transport pro 89.0 6.7 0.00023 45.0 16.9 190 1568-1802 76-273 (292)
219 2yhc_A BAMD, UPF0169 lipoprote 88.9 15 0.0005 40.1 18.9 191 1569-1791 4-209 (225)
220 3edt_B KLC 2, kinesin light ch 88.6 13 0.00044 41.6 19.0 133 1567-1724 41-181 (283)
221 3fga_B Serine/threonine-protei 88.6 13 0.00045 44.0 18.4 248 58-316 117-372 (403)
222 1p5q_A FKBP52, FK506-binding p 88.5 4.9 0.00017 47.4 15.5 127 1568-1725 146-277 (336)
223 3q15_A PSP28, response regulat 88.2 3.9 0.00013 49.1 14.7 161 1291-1452 107-286 (378)
224 2hr2_A Hypothetical protein; a 88.2 9.8 0.00034 38.9 15.0 124 1617-1773 15-149 (159)
225 1ho8_A Vacuolar ATP synthase s 88.1 25 0.00084 42.5 20.6 55 478-532 418-477 (480)
226 1elr_A TPR2A-domain of HOP; HO 87.9 2.6 8.8E-05 40.8 10.7 107 1290-1406 9-127 (131)
227 2yhc_A BAMD, UPF0169 lipoprote 87.6 14 0.00048 40.3 17.7 117 1612-1756 3-126 (225)
228 1w9c_A CRM1 protein, exportin 87.5 45 0.0015 38.1 22.9 168 170-337 46-229 (321)
229 2ooe_A Cleavage stimulation fa 87.3 26 0.00089 44.0 22.4 176 1567-1797 319-494 (530)
230 4gmo_A Putative uncharacterize 87.2 4.6 0.00016 52.9 15.4 153 157-313 39-217 (684)
231 2vsy_A XCC0866; transferase, g 87.2 5.1 0.00018 51.3 15.7 151 1582-1793 2-155 (568)
232 1hh8_A P67PHOX, NCF-2, neutrop 87.1 5 0.00017 43.2 13.5 117 1290-1415 11-145 (213)
233 2pzi_A Probable serine/threoni 87.1 6.4 0.00022 51.6 16.7 157 1580-1798 402-566 (681)
234 1upk_A MO25 protein; transfera 86.9 49 0.0017 37.9 21.5 192 112-310 80-283 (341)
235 1qqe_A Vesicular transport pro 86.7 18 0.00062 41.3 18.7 188 1569-1798 37-231 (292)
236 2vgx_A Chaperone SYCD; alterna 86.7 3.7 0.00013 41.7 11.2 86 1292-1383 28-118 (148)
237 1na0_A Designed protein CTPR3; 86.6 4.9 0.00017 38.3 11.7 88 1290-1383 14-106 (125)
238 2r5s_A Uncharacterized protein 86.1 3.4 0.00012 43.2 11.0 165 1569-1793 6-171 (176)
239 4gmo_A Putative uncharacterize 86.1 1.5 5.2E-05 57.5 9.8 147 646-802 40-213 (684)
240 3urz_A Uncharacterized protein 86.0 5.6 0.00019 43.0 13.0 149 1291-1451 10-181 (208)
241 1lrv_A LRV, leucine-rich repea 85.5 0.64 2.2E-05 51.8 4.9 64 569-666 178-241 (244)
242 3gyz_A Chaperone protein IPGC; 85.5 7.6 0.00026 39.6 12.8 101 1671-1797 35-135 (151)
243 2b6c_A Hypothetical protein EF 85.4 8.8 0.0003 41.9 14.0 131 72-223 58-188 (220)
244 2xcb_A PCRH, regulatory protei 85.3 3.4 0.00012 41.4 10.1 86 1292-1383 25-115 (142)
245 2fbn_A 70 kDa peptidylprolyl i 84.6 5 0.00017 42.8 11.7 114 1290-1407 43-172 (198)
246 1lsh_A Lipovitellin (LV-1N, LV 84.2 72 0.0024 43.8 25.3 166 123-315 407-581 (1056)
247 1kt0_A FKBP51, 51 kDa FK506-bi 84.1 6.9 0.00024 48.4 14.1 127 1568-1725 267-398 (457)
248 3gw4_A Uncharacterized protein 83.9 15 0.00051 38.7 15.2 127 1325-1451 26-171 (203)
249 1ihg_A Cyclophilin 40; ppiase 83.8 5.5 0.00019 47.7 12.6 125 1569-1725 223-354 (370)
250 3ro3_A PINS homolog, G-protein 83.7 4.8 0.00016 40.5 10.6 60 1290-1349 14-73 (164)
251 2npp_B PP2A, B subunit, serine 83.1 41 0.0014 40.5 19.2 243 64-317 156-406 (449)
252 2ifu_A Gamma-SNAP; membrane fu 82.7 13 0.00046 42.8 15.1 184 1569-1798 36-226 (307)
253 2c2l_A CHIP, carboxy terminus 82.7 20 0.00067 40.8 16.3 113 1568-1721 3-120 (281)
254 1p5q_A FKBP52, FK506-binding p 82.5 5 0.00017 47.3 11.4 118 1290-1410 152-283 (336)
255 3rkv_A Putative peptidylprolyl 82.1 13 0.00043 38.0 13.1 126 1568-1725 10-145 (162)
256 1w9c_A CRM1 protein, exportin 82.0 77 0.0026 36.2 25.0 132 119-251 86-227 (321)
257 3mv2_B Coatomer subunit epsilo 81.8 7.2 0.00024 44.9 11.7 118 1290-1415 105-235 (310)
258 3jxy_A Alkylpurine DNA glycosy 81.6 22 0.00074 39.1 15.3 129 73-222 65-194 (232)
259 1elw_A TPR1-domain of HOP; HOP 81.6 8.9 0.0003 35.9 11.0 87 1290-1382 9-100 (118)
260 2ifu_A Gamma-SNAP; membrane fu 81.3 13 0.00044 43.0 14.3 125 1292-1417 83-221 (307)
261 2kck_A TPR repeat; tetratricop 80.3 12 0.00041 34.6 11.3 87 1693-1798 21-109 (112)
262 1lsh_A Lipovitellin (LV-1N, LV 80.2 11 0.00038 51.8 14.9 132 70-219 392-539 (1056)
263 1hxi_A PEX5, peroxisome target 80.0 6.1 0.00021 38.3 9.2 83 1693-1795 32-114 (121)
264 3gw4_A Uncharacterized protein 79.8 8.2 0.00028 40.9 11.1 126 1290-1415 31-171 (203)
265 2qfc_A PLCR protein; TPR, HTH, 79.8 20 0.00067 41.0 15.1 86 1330-1415 120-220 (293)
266 2e2e_A Formate-dependent nitri 79.5 10 0.00035 39.3 11.5 89 1290-1384 49-145 (177)
267 2e2e_A Formate-dependent nitri 79.3 16 0.00055 37.7 13.0 111 1567-1716 42-153 (177)
268 1ihg_A Cyclophilin 40; ppiase 79.1 6 0.00021 47.4 10.6 23 1290-1312 228-250 (370)
269 2kck_A TPR repeat; tetratricop 78.9 4.5 0.00015 37.7 7.7 51 1364-1415 50-101 (112)
270 3rkv_A Putative peptidylprolyl 78.9 27 0.00091 35.4 14.4 117 1613-1756 11-127 (162)
271 3fga_B Serine/threonine-protei 78.8 56 0.0019 38.6 18.0 198 599-809 129-372 (403)
272 4g26_A Pentatricopeptide repea 78.6 22 0.00075 44.4 15.8 92 1324-1417 104-201 (501)
273 3q49_B STIP1 homology and U bo 78.2 14 0.00048 36.0 11.5 44 1364-1410 53-96 (137)
274 2r5s_A Uncharacterized protein 77.7 12 0.00042 38.8 11.4 148 1290-1447 11-164 (176)
275 3qou_A Protein YBBN; thioredox 77.3 10 0.00035 43.4 11.5 117 1290-1415 122-243 (287)
276 3q15_A PSP28, response regulat 76.7 73 0.0025 37.6 19.6 146 1569-1756 141-291 (378)
277 1hh8_A P67PHOX, NCF-2, neutrop 76.5 30 0.001 36.8 14.6 124 1568-1716 36-159 (213)
278 2xev_A YBGF; tetratricopeptide 76.5 12 0.00042 35.9 10.4 15 1367-1381 52-66 (129)
279 2hr2_A Hypothetical protein; a 75.7 19 0.00066 36.7 11.5 121 1568-1713 10-137 (159)
280 2dba_A Smooth muscle cell asso 74.8 15 0.0005 36.3 10.7 88 1290-1383 33-128 (148)
281 4g1t_A Interferon-induced prot 74.6 37 0.0013 41.6 16.6 153 1547-1724 29-184 (472)
282 1kt0_A FKBP51, 51 kDa FK506-bi 73.9 9.5 0.00033 47.2 10.7 117 1290-1409 273-403 (457)
283 4g26_A Pentatricopeptide repea 73.9 23 0.00078 44.2 14.1 155 1292-1455 33-203 (501)
284 2c2l_A CHIP, carboxy terminus 72.4 8.9 0.0003 43.8 9.2 88 1290-1383 9-101 (281)
285 2kat_A Uncharacterized protein 71.6 8.1 0.00028 36.7 7.4 61 1323-1383 17-82 (115)
286 1wao_1 Serine/threonine protei 71.6 4.4 0.00015 50.5 6.8 89 1292-1386 13-106 (477)
287 3o2t_A Symplekin; heat repeat, 70.8 1.7E+02 0.0058 34.5 21.3 128 169-309 41-182 (386)
288 3gs3_A Symplekin, LD45768P; he 69.6 73 0.0025 35.3 15.2 123 168-303 30-166 (257)
289 3ro3_A PINS homolog, G-protein 69.6 71 0.0024 31.3 14.7 140 1614-1792 10-155 (164)
290 2npp_B PP2A, B subunit, serine 69.5 1.3E+02 0.0046 36.1 18.4 202 598-809 161-405 (449)
291 1wao_1 Serine/threonine protei 67.7 5 0.00017 50.0 6.1 111 1570-1721 7-117 (477)
292 1na3_A Designed protein CTPR2; 67.7 21 0.0007 31.6 9.0 66 1566-1644 6-71 (91)
293 3ma5_A Tetratricopeptide repea 66.7 11 0.00039 34.7 7.0 46 1364-1412 17-62 (100)
294 3ma5_A Tetratricopeptide repea 66.6 20 0.00068 33.0 8.7 65 1567-1644 5-69 (100)
295 1na3_A Designed protein CTPR2; 66.0 56 0.0019 28.5 11.7 80 1613-1723 9-88 (91)
296 4b4t_Q 26S proteasome regulato 65.2 29 0.00098 42.0 12.4 159 1290-1448 60-237 (434)
297 3u3w_A Transcriptional activat 65.2 1.1E+02 0.0038 34.4 16.7 141 1575-1756 121-267 (293)
298 2jak_A Serine/threonine-protei 63.0 1.3E+02 0.0045 35.4 16.2 196 58-262 162-360 (392)
299 3g2s_A C-terminal fragment of 62.7 52 0.0018 33.1 11.1 113 558-675 12-130 (149)
300 4f3v_A ESX-1 secretion system 62.4 37 0.0013 38.3 11.3 113 1296-1416 113-233 (282)
301 4e6h_A MRNA 3'-END-processing 62.4 32 0.0011 44.6 12.2 114 1569-1721 434-550 (679)
302 1zu2_A Mitochondrial import re 62.1 11 0.00038 38.5 6.2 79 1671-1757 42-122 (158)
303 3k9i_A BH0479 protein; putativ 61.5 16 0.00055 34.7 7.2 48 1364-1414 37-84 (117)
304 2if4_A ATFKBP42; FKBP-like, al 59.8 17 0.00058 42.7 8.4 120 1569-1721 179-307 (338)
305 1zu2_A Mitochondrial import re 59.7 25 0.00086 35.8 8.3 59 1694-1756 18-76 (158)
306 2l6j_A TPR repeat-containing p 59.5 42 0.0014 30.8 9.8 64 1568-1644 3-66 (111)
307 1juq_A ADP-ribosylation factor 59.0 46 0.0016 34.4 10.3 113 558-675 14-132 (171)
308 3k9i_A BH0479 protein; putativ 58.9 24 0.00083 33.4 8.0 66 1567-1645 25-90 (117)
309 1hz4_A MALT regulatory protein 58.4 1.1E+02 0.0037 35.8 15.6 162 1290-1451 98-277 (373)
310 1ouv_A Conserved hypothetical 56.8 2.3E+02 0.0078 31.1 22.2 166 1568-1794 37-214 (273)
311 2kc7_A BFR218_protein; tetratr 56.3 23 0.00078 32.1 7.1 50 1363-1415 9-59 (99)
312 2l6j_A TPR repeat-containing p 56.1 83 0.0028 28.6 11.3 82 1613-1725 4-91 (111)
313 4b4t_Q 26S proteasome regulato 54.8 65 0.0022 38.7 13.0 117 1578-1723 104-220 (434)
314 1dvp_A HRS, hepatocyte growth 54.7 80 0.0027 34.2 12.0 111 558-674 6-118 (220)
315 3u3w_A Transcriptional activat 54.4 2.7E+02 0.0091 31.1 20.8 179 1570-1792 76-263 (293)
316 1x5b_A Signal transducing adap 53.9 56 0.0019 33.5 9.9 98 571-674 29-128 (163)
317 3n71_A Histone lysine methyltr 53.9 34 0.0012 42.4 10.0 87 1296-1382 320-421 (490)
318 3mv2_B Coatomer subunit epsilo 53.4 69 0.0024 36.7 11.6 141 1304-1453 85-237 (310)
319 3s4w_B Protein FACD2, fanconi 53.3 57 0.002 44.8 12.4 153 186-348 392-545 (1323)
320 2kat_A Uncharacterized protein 53.0 69 0.0024 29.8 10.2 65 1567-1644 17-81 (115)
321 2kc7_A BFR218_protein; tetratr 52.8 55 0.0019 29.4 9.1 70 1617-1717 4-74 (99)
322 3ldz_A STAM-1, signal transduc 52.7 85 0.0029 31.2 10.8 98 570-674 18-117 (140)
323 3zyq_A Hepatocyte growth facto 52.5 70 0.0024 34.8 11.0 111 558-674 9-121 (226)
324 1ouv_A Conserved hypothetical 51.2 2.8E+02 0.0094 30.4 26.2 168 1567-1795 4-179 (273)
325 4f3v_A ESX-1 secretion system 50.8 64 0.0022 36.4 10.7 128 1325-1453 102-234 (282)
326 4b4t_R RPN7, 26S proteasome re 48.9 31 0.0011 41.9 8.4 87 1362-1448 139-229 (429)
327 3qww_A SET and MYND domain-con 48.5 26 0.00089 42.6 7.6 88 1295-1382 308-410 (433)
328 3qww_A SET and MYND domain-con 47.3 91 0.0031 37.8 12.2 86 1365-1451 309-406 (433)
329 1mhq_A ADP-ribosylation factor 46.2 1.1E+02 0.0037 30.7 10.4 100 571-675 15-120 (148)
330 3rjv_A Putative SEL1 repeat pr 45.0 1.7E+02 0.0059 30.9 13.0 141 1567-1755 16-158 (212)
331 3gs3_A Symplekin, LD45768P; he 44.8 3.6E+02 0.012 29.8 22.3 116 148-269 49-173 (257)
332 3ebb_A Phospholipase A2-activa 44.0 1.4E+02 0.0046 34.2 12.1 98 170-271 165-265 (304)
333 2wxf_A Phosphatidylinositol-4, 40.8 34 0.0012 45.5 7.3 81 1782-1866 485-569 (940)
334 2p58_C Putative type III secre 38.8 1.5E+02 0.0051 27.3 8.6 52 1397-1455 46-97 (116)
335 3spa_A Mtrpol, DNA-directed RN 38.3 1.2E+02 0.0039 40.7 11.3 88 1325-1414 127-224 (1134)
336 3mkq_A Coatomer beta'-subunit; 37.0 1.1E+02 0.0036 40.6 11.8 43 1364-1417 733-775 (814)
337 2y3a_A Phosphatidylinositol-4, 35.8 47 0.0016 44.8 7.4 117 1744-1868 593-724 (1092)
338 3qwp_A SET and MYND domain-con 35.1 1.5E+02 0.0052 35.8 11.5 87 1364-1451 297-395 (429)
339 2xm6_A Protein corresponding t 35.1 6.7E+02 0.023 30.2 36.0 140 1567-1756 289-433 (490)
340 3dad_A FH1/FH2 domain-containi 33.9 3.5E+02 0.012 31.0 13.1 112 24-142 118-233 (339)
341 1elk_A Target of MYB1; superhe 32.0 2.3E+02 0.0079 28.6 10.3 111 558-673 17-132 (157)
342 2uwj_G Type III export protein 31.9 1.5E+02 0.0051 27.2 7.4 52 1397-1455 45-96 (115)
343 3qwp_A SET and MYND domain-con 31.6 1.4E+02 0.0047 36.2 10.2 57 1326-1382 330-399 (429)
344 1pzq_A Erythronolide synthase; 31.4 52 0.0018 24.9 3.7 38 1507-1544 13-50 (60)
345 3zyq_A Hepatocyte growth facto 31.3 1.9E+02 0.0064 31.4 10.2 108 686-802 10-117 (226)
346 3mkq_A Coatomer beta'-subunit; 31.0 2E+02 0.0069 37.8 13.0 102 1334-1453 661-762 (814)
347 3n71_A Histone lysine methyltr 31.0 1.7E+02 0.0058 36.0 11.0 87 1551-1645 331-422 (490)
348 2if4_A ATFKBP42; FKBP-like, al 30.8 1.2E+02 0.0043 35.1 9.5 101 1671-1797 178-295 (338)
349 2fv2_A RCD1 required for cell 30.2 1.2E+02 0.0041 33.2 8.0 113 689-802 103-223 (268)
350 2jak_A Serine/threonine-protei 29.4 4.2E+02 0.014 31.1 13.2 186 599-797 174-361 (392)
351 1elk_A Target of MYB1; superhe 25.8 2.9E+02 0.01 27.9 9.8 114 679-801 12-128 (157)
352 1juq_A ADP-ribosylation factor 25.5 4.6E+02 0.016 26.8 11.3 87 281-369 50-145 (171)
353 4h7y_A Dual specificity protei 25.3 3.6E+02 0.012 27.1 9.6 112 1612-1756 12-124 (161)
354 1x5b_A Signal transducing adap 25.2 4.3E+02 0.015 26.8 11.0 76 682-762 51-128 (163)
355 1t06_A Hypothetical protein; s 25.2 1.1E+02 0.0038 33.4 7.1 127 74-223 53-180 (235)
356 3eg5_B Protein diaphanous homo 25.0 8.8E+02 0.03 28.4 15.8 103 168-272 135-249 (383)
357 4flb_A Regulation of nuclear P 24.7 1.6E+02 0.0053 28.8 7.4 68 68-135 39-107 (132)
358 4e6h_A MRNA 3'-END-processing 24.6 1.2E+03 0.041 29.7 40.9 258 1535-1838 302-575 (679)
359 3dad_A FH1/FH2 domain-containi 24.2 7E+02 0.024 28.5 13.3 67 565-632 165-235 (339)
360 3ldz_A STAM-1, signal transduc 24.1 3.5E+02 0.012 26.7 9.8 60 166-225 55-116 (140)
361 1vdy_A Hypothetical protein (R 23.8 1.5E+02 0.0051 29.3 6.8 63 263-326 31-93 (140)
362 2v5f_A Prolyl 4-hydroxylase su 23.4 4.2E+02 0.014 24.0 12.3 87 1613-1723 5-91 (104)
363 4fu3_A Regulation of nuclear P 22.9 4.5E+02 0.016 25.4 10.5 53 679-736 35-90 (135)
364 1ya0_A SMG-7 transcript varian 22.7 4.5E+02 0.015 32.2 12.5 65 1671-1755 151-215 (497)
365 1dvp_A HRS, hepatocyte growth 22.4 7.2E+02 0.025 26.4 13.2 89 665-762 28-118 (220)
366 3d9j_A RNA-binding protein 16; 22.3 4.2E+02 0.014 26.3 10.0 83 926-1016 29-118 (145)
367 1pc2_A Mitochondria fission pr 22.1 6E+02 0.021 25.4 11.7 88 1612-1725 31-118 (152)
368 2xm6_A Protein corresponding t 21.1 1.1E+03 0.038 28.1 33.7 115 1567-1722 326-450 (490)
369 4fu3_A Regulation of nuclear P 20.1 4E+02 0.014 25.8 9.4 104 898-1016 6-112 (135)
No 1
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=4.6e-33 Score=400.42 Aligned_cols=932 Identities=13% Similarity=0.136 Sum_probs=600.6
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~-g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~ 189 (1874)
+...|.++. +.|.++|..|...|....... ....++.....++.++++|. +.++..|.+|+.+|+.++++++.
T Consensus 8 l~~lL~~l~--s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--- 81 (1230)
T 1u6g_C 8 ISNLLEKMT--SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--- 81 (1230)
T ss_dssp HHHHHHHTT--CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH---
T ss_pred HHHHHHhcC--CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH---
Confidence 445566654 468999999998888765543 22233456677888888886 56788999999999999998876
Q ss_pred hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc--hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000196 190 VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1874)
Q Consensus 190 ~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1874)
++++.+++.++.++.|+++.||.+|+.+++.+...+.... ......+...++|.+..++.+..+++++++|+.+++.+
T Consensus 82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999887665321 11344577889999999998533588999999999999
Q ss_pred HHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC---CCCcchHHHH
Q 000196 268 LRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI---PAERDSGFIA 344 (1874)
Q Consensus 268 l~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~---~~~R~~a~~a 344 (1874)
++..++.+.+++++++..++..+.++++.||..++.+++.++...++.| ++.+|+.++..|.+ ...|..++.+
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~----~~~~l~~l~~~L~~~~~~~~r~~a~~~ 237 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV----FVDLIEHLLSELSKNDSMSTTRTYIQC 237 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 9877777888999999999999999999999999999999998877665 34566666666643 2468899999
Q ss_pred HHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC-CHHHH-H-H-
Q 000196 345 LGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGL-STTLV-D-A- 420 (1874)
Q Consensus 345 lg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~l-s~~l~-~-~- 420 (1874)
+|.++..+|+.+.||++.+++.+...+.+.+...+..++.+++.+++.+|+.+.||++.+++.++..-. ++... + .
T Consensus 238 l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~ 317 (1230)
T 1u6g_C 238 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDED 317 (1230)
T ss_dssp HHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccc
Confidence 999999999999999999999999999876666677899999999999999999999999999986421 21110 0 0
Q ss_pred -----HH------HHH---HhC---CCChHHHHHHHHHHHHHHhc--CCCCCCCCCCCCCCCCCccCCCccccccCCchh
Q 000196 421 -----LE------QIT---VSI---PSLLPTIQDRLLDCISFVLS--KSHYSQARPAATPIRGNVMNIPQQVSDLNGSAP 481 (1874)
Q Consensus 421 -----l~------~i~---~~~---p~l~~~i~~~ll~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1874)
.. +.. +.+ ......++....+.+..+.. ++.+.+..+. .. +.... ...+. +...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~--l~-~~l~~---~l~d~-~~~V 390 (1230)
T 1u6g_C 318 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT--VS-PALIS---RFKER-EENV 390 (1230)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTT--TH-HHHHS---TTSCS-SSHH
T ss_pred cccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHH--HH-HHHHH---HcCCC-chHH
Confidence 00 000 000 00011222222233322221 1000000000 00 00000 00111 2223
Q ss_pred HHHHHHhhcccc--cC----------------C--Cc---chhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCc
Q 000196 482 VQLALQTLARFN--FK----------------G--HD---LLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVS 538 (1874)
Q Consensus 482 ~~~Al~~L~~~~--f~----------------~--~~---l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~ 538 (1874)
...|+++++.+- .. | .. +.+.+-..+...+.++++.+|.++...++.++......
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~-- 468 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA-- 468 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT--
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh--
Confidence 345666555431 00 0 01 11222233445578889999988888877776532211
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHhcCCCh--hHHHHHHHhccC------CCCcchhhccHhhHHHHHHHhCC
Q 000196 539 FTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADV--TVRHSIFSSLYG------NRGFDDFLAQADCLSAIFAALND 610 (1874)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~--~vR~~~l~~l~~------~~~f~~~L~~~~~l~~L~~~l~D 610 (1874)
..+.+..+++.++.. +.|+.+ .+|..++..+.. ...|.+|+ +.+++.++.+++|
T Consensus 469 ---------------l~~~l~~ll~~l~~~-L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~llp~L~~~l~d 530 (1230)
T 1u6g_C 469 ---------------LTQHIPVLVPGIIFS-LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALVPPVVACVGD 530 (1230)
T ss_dssp ---------------TGGGHHHHHHHHHHH-TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTHHHHHHHHTC
T ss_pred ---------------hHHHHHHHHHHHHHH-HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHHHHHHHHHcc
Confidence 123356666666654 567654 888887776631 12244455 3578999999999
Q ss_pred CCHHHHHHHHHHHHhhhcCCc-------CccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHH
Q 000196 611 EDFDVREYAISVAGRLSEKNP-------AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAP 683 (1874)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p-------~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~ 683 (1874)
.++.||..|+.+++.+++..+ ..+.|++..++..++..+...+.+...|+.|+.+++.++...++.+.+|++.
T Consensus 531 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~ 610 (1230)
T 1u6g_C 531 PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPN 610 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHH
Confidence 999999999999999886533 2567888887777777774322567889999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc-ccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc
Q 000196 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-GFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~ 762 (1874)
+++.+.+.+.++ ..+.+++.+++.++... +.++.+++.+++|.+...+.+. +...|.+|+.+++.++...+
T Consensus 611 ~l~~L~~~l~~e-------~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~-~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 611 TLQIFLERLKNE-------ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKN-QRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHHHHHHTTSS-------SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccc-------hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhccc
Confidence 999999988753 35667788888887643 3467899999999999999876 57899999999999999887
Q ss_pred ccccccccchHHHHHHH---HHhcCCCCHHHHHHHHHHHHHhcccCccch-----hhhcc----cCCC--cccc------
Q 000196 763 YVITPYNEYPQLLGLLL---KMLNGELVWSTRREVLKVLGIMGALDPHAH-----KRNQQ----LSGS--HGEV------ 822 (1874)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll---~~l~~~~~~~vr~~al~~lg~lgaldp~~~-----~~~~~----~~~~--~~~~------ 822 (1874)
..+. .+.+.+.+. .++. +.+..++..++.+++.+-.-.|-.. ..... +... .+..
T Consensus 683 ~~~~----~~~v~~~l~~ll~ll~-~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~ 757 (1230)
T 1u6g_C 683 DSLT----AAMIDAVLDELPPLIS-ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLD 757 (1230)
T ss_dssp TTCC----HHHHHHHHTTCGGGSC-TTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred ccCC----HHHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHH
Confidence 5441 123444443 3332 4467788888888887643222110 00000 0000 0000
Q ss_pred -cccCCCCCCCCCCccccccccCCC--CCCC---c-cchH--HHHHHHHHHHc---------------cCC-CchhhHHH
Q 000196 823 -TRAASDSGQHIQPMDEFPMDLWPS--FATS---E-DYYS--TVAINSLMRIL---------------RDP-SLASYHQK 877 (1874)
Q Consensus 823 -~~~~~~~~~~~~~~~~~~~~l~~~--~~~~---~-~~~~--~~vi~~Ll~iL---------------~d~-s~~~~~~~ 877 (1874)
.+.......+....+.+...+... .+.. . +.+. ...+..+.... +++ .....+..
T Consensus 758 ~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (1230)
T 1u6g_C 758 FFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLL 837 (1230)
T ss_dssp HHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHH
Confidence 000000000000001000011000 0000 0 0000 01122222111 111 11111112
Q ss_pred HHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcc
Q 000196 878 VVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPAT 957 (1874)
Q Consensus 878 v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~ 957 (1874)
++.++..+-... ...+ .+++.+.++..+.+.++.+|..+..++|.++ ..++..|+|.++..+..- . +
T Consensus 838 ~l~~l~~~g~~~--~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~---~~~~~~~lp~ll~~l~~~----~--~- 904 (1230)
T 1u6g_C 838 ALLSLGEVGHHI--DLSG-QLELKSVILEAFSSPSEEVKSAASYALGSIS---VGNLPEYLPFVLQEITSQ----P--K- 904 (1230)
T ss_dssp HHHHHHHHHHHS--CCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHSC----G--G-
T ss_pred HHHHHHHhcccC--CCcc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHh---ccCHHHHHHHHHHHHhcc----c--h-
Confidence 222223322211 1222 4677888888888888889998888888876 345667777776666421 1 0
Q ss_pred cccccchhHHHHHHHHHHHh-hhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHHh
Q 000196 958 NRTYRGLPVLHLVQQLCLAL-NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIRL 1036 (1874)
Q Consensus 958 ~~~~~~~~~l~~i~~l~~~l-~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~~ 1036 (1874)
.+...+..+..+.... ++.+.||.+.+++.+++.+++.+. .-+..+..+++.+.... -..++|.+.+.
T Consensus 905 ----~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~-~~r~~~a~~lg~l~~~~------~~~l~p~l~~~ 973 (1230)
T 1u6g_C 905 ----RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE-GTRNVVAECLGKLTLID------PETLLPRLKGY 973 (1230)
T ss_dssp ----GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSST-THHHHHHHHHHHHHHSS------GGGTHHHHTTT
T ss_pred ----hhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcch-hhHHHHHHHHhhhhccC------hHHHHHHHHHH
Confidence 1223455554444333 567999999999999998865331 12334444444443321 14578888888
Q ss_pred hcCCCcHHHHHHHHHHHHhhccc--ccccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHH
Q 000196 1037 FKVDAPVDIRRAAIETLTRLIPR--VQVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLL 1114 (1874)
Q Consensus 1037 ~~~~~~~~vr~~ai~~l~~l~~~--~~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l 1114 (1874)
+..+ +..+|..++.+++.+... ..+.+|+..++++++..+++++.++|++|+.+|+.++...|..+.++++.+.+.+
T Consensus 974 l~~~-~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l 1052 (1230)
T 1u6g_C 974 LISG-SSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1052 (1230)
T ss_dssp SSSS-CHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred hcCC-CHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHH
Confidence 7654 466899999998888654 2344678888888889999989999999999999999998888888998888887
Q ss_pred HhC
Q 000196 1115 LKH 1117 (1874)
Q Consensus 1115 ~~~ 1117 (1874)
...
T Consensus 1053 ~~~ 1055 (1230)
T 1u6g_C 1053 YNE 1055 (1230)
T ss_dssp HHT
T ss_pred HHH
Confidence 664
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.2e-32 Score=378.08 Aligned_cols=758 Identities=12% Similarity=0.146 Sum_probs=534.0
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000196 166 VEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1874)
Q Consensus 166 ~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~ 245 (1874)
+...|..|-..|.++.. .| .....+-.|+..+.+.++.||..|+-.|+..+. .+........-..+-+.+.
T Consensus 26 d~~~r~~Ae~~L~~~~~-~p-----~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~---~~w~~~~~~~~~~ik~~ll 96 (852)
T 4fdd_A 26 DTTIQRTVQQKLEQLNQ-YP-----DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK---AHFQNFPNGVTDFIKSECL 96 (852)
T ss_dssp CHHHHHHHHHHHHHHTT-SH-----HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTT---TSGGGCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh-CC-----CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHH---HccCCCCHHHHHHHHHHHH
Confidence 44567777777776532 22 222333444455578889999999998887653 1222122223345556666
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHH----HH
Q 000196 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTN----YL 321 (1874)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~----yl 321 (1874)
..+.+++ ..+|+.+..+++.++...+. ....++++.++..+++.++.+|+.++.+++.++...+..|... ++
T Consensus 97 ~~l~~~~-~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~ 172 (852)
T 4fdd_A 97 NNIGDSS-PLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 172 (852)
T ss_dssp TTTTCSS-HHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCH
T ss_pred HHHcCCC-HHHHHHHHHHHHHHHHhcCc---cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchH
Confidence 7777664 67899999999999875321 1234466677777888899999999999999998766655432 36
Q ss_pred HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchH
Q 000196 322 KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEP 399 (1874)
Q Consensus 322 ~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p 399 (1874)
+.+++.++..++++. .|..|+.+++.++...+..+.++++.+++.+...+.+.+.+++..++.|++.+++..++.+.|
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 778888888887654 588999999988776666677788889988888887655555668999999999987777777
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc
Q 000196 400 HVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS 479 (1874)
Q Consensus 400 ~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1874)
|++.+++.++..
T Consensus 253 ~l~~l~~~l~~~-------------------------------------------------------------------- 264 (852)
T 4fdd_A 253 HMHNIVEYMLQR-------------------------------------------------------------------- 264 (852)
T ss_dssp GHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Confidence 877766654421
Q ss_pred hhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHH
Q 000196 480 APVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE 559 (1874)
Q Consensus 480 ~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (1874)
+.++++.||..|...+..+..... + .....+.+.
T Consensus 265 -------------------------------~~~~~~~vr~~a~e~l~~l~~~~~--~-------------~~~~~~~~~ 298 (852)
T 4fdd_A 265 -------------------------------TQDQDENVALEACEFWLTLAEQPI--C-------------KDVLVRHLP 298 (852)
T ss_dssp -------------------------------HTCSSHHHHHHHHHHHHHHTTSTT--H-------------HHHHTTTHH
T ss_pred -------------------------------ccCCcHHHHHHHHHHHHHHhcchh--H-------------HHHHHHHHH
Confidence 011122333333222222211000 0 000011233
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC--CCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 560 ELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND--EDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 560 ~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D--~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
.+++.++... ..++.++. . +..+...|.. + .| .+..||.+|..+++.++...|..+.|.
T Consensus 299 ~l~p~ll~~l-~~~e~d~~--~---~~~d~~ed~~----~---------dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~ 359 (852)
T 4fdd_A 299 KLIPVLVNGM-KYSDIDII--L---LKGDVEGGSG----G---------DDTISDWNLRKCSAAALDVLANVYRDELLPH 359 (852)
T ss_dssp HHHHHHHHHT-SCCHHHHH--H---HHC-------------------------CCCCHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHc-CCcHhHHH--H---hcCCcccccc----c---------ccccccchHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444333321 11211111 0 0000000000 0 01 456799999999999999988776665
Q ss_pred HHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHH
Q 000196 638 LRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLAR 717 (1874)
Q Consensus 638 l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~ 717 (1874)
+.+.+.+ +..+ .+++.|+.|+.+|+.+++.+++.+.||++.+++.+++.+.|+ ++.|+.+++.++|.++.
T Consensus 360 l~~~l~~----~l~~-~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 360 ILPLLKE----LLFH-HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-----KALVRSITCWTLSRYAH 429 (852)
T ss_dssp HHHHHHH----HHTC-SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-----SHHHHHHHHHHHHHTHH
T ss_pred HHHHHHH----HhcC-CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHH
Confidence 5444433 3344 579999999999999999999888999999999999999875 88999999999999998
Q ss_pred hcc-cchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000196 718 VGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1874)
Q Consensus 718 ~~g-~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~ 796 (1874)
..+ ....+|+..++|.++..+.|. +..+|..|+++|+.+++..+..+.||. |.+++.|+..++..+ .+....++.
T Consensus 430 ~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~-~~~~~~~~~ 505 (852)
T 4fdd_A 430 WVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQ-HKNLLILYD 505 (852)
T ss_dssp HHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhC-hHHHHHHHH
Confidence 665 357889999999999999986 678999999999999999998888875 899999999997553 344445566
Q ss_pred HHHHhcc-cCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHH---HccCCCch
Q 000196 797 VLGIMGA-LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMR---ILRDPSLA 872 (1874)
Q Consensus 797 ~lg~lga-ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~---iL~d~s~~ 872 (1874)
++|.+.. +.+. ....+|+ ..+++.|+. .+.|++..
T Consensus 506 ai~~l~~~~~~~----------------------------------------~~~~~~~-~~l~p~l~~~~~~l~d~~~~ 544 (852)
T 4fdd_A 506 AIGTLADSVGHH----------------------------------------LNKPEYI-QMLMPPLIQKWNMLKDEDKD 544 (852)
T ss_dssp HHHHHHHHHGGG----------------------------------------GCCHHHH-HHHHHHHHHHHHHSCTTCTT
T ss_pred HHHHHHHHhhhh----------------------------------------hccHHHH-HHHHHHHHHHHHhcccccHH
Confidence 6665531 0000 0112344 466777774 45555432
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcC-----------------CcchhHHHHHHHHHHHHHHHHhHH
Q 000196 873 SYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC-----------------DDYLKDYITWKLGTLVSIVRQHIR 935 (1874)
Q Consensus 873 ~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~-----------------~~~~~~~~~~~l~~lv~~~~~~i~ 935 (1874)
. ..+++++..+...+|..+.||++.+++.++..+++. +...+..++..++.++..+|.++.
T Consensus 545 -~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~ 622 (852)
T 4fdd_A 545 -L-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 622 (852)
T ss_dssp -H-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGH
T ss_pred -H-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHH
Confidence 3 378999999999999999999999999888887642 233667778999999999999999
Q ss_pred HhH--HHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHH
Q 000196 936 KYL--QELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILH 1013 (1874)
Q Consensus 936 ~y~--~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~ 1013 (1874)
+|+ +.+++.+.+.++... + .+++ .++.+++.++...+.+|.+|++.++|.+++.+.+.+ ..-+..+..+++
T Consensus 623 ~~~~~~~~~~~l~~~l~~~~---~--~vr~-~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~-~~v~~~a~~alg 695 (852)
T 4fdd_A 623 QLVARSNILTLMYQCMQDKM---P--EVRQ-SSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF-ISVCNNATWAIG 695 (852)
T ss_dssp HHHHTCCHHHHHHHHTTCSS---H--HHHH-HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTS-HHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHhCCCC---h--hHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccc-hHHHHHHHHHHH
Confidence 998 899999999886543 1 2233 788899999999999999999999999999995422 111223333344
Q ss_pred HH-HHHhcchhhhhhhhHHHHHHhhcCC-CcHHHHHHHHHHHHhhcccc--cccchhHhHHHHHHHHhCC-CCHHHHHHH
Q 000196 1014 TL-EVFGGTLDEHMHLLLPALIRLFKVD-APVDIRRAAIETLTRLIPRV--QVTGHISSLVHHLKLVLDG-KNDELRKDA 1088 (1874)
Q Consensus 1014 ~l-~~~g~~~~~~~~~ilp~l~~~~~~~-~~~~vr~~ai~~l~~l~~~~--~~~~~~~~ii~~l~~~l~~-~~~~l~~~a 1088 (1874)
.+ ..+|+.+.+|++.++|.++++++.. .+..+++.|+.++|+|+... .+.||++.+++++++.|.. .+.+.|..+
T Consensus 696 ~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a 775 (852)
T 4fdd_A 696 EISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSA 775 (852)
T ss_dssp HHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHH
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHH
Confidence 33 4478889999999999999999753 56789999999999998862 3568999999999999964 567889999
Q ss_pred HHHHHHHHHHhccccccchhhHHHHHHhCCCCchhHHHHHHHHhc
Q 000196 1089 VDALCCLAHALGEDFTIFIPSIHKLLLKHRLRHKEFEEIEGRLRR 1133 (1874)
Q Consensus 1089 l~~L~~l~~~~g~~f~~~ip~i~~~l~~~~~~~~~~~~~~~~~~~ 1133 (1874)
+..||.++.+-+......+..+...+.......++......++..
T Consensus 776 ~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 776 FRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999988878788888888877765445555555555543
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1e-30 Score=364.77 Aligned_cols=779 Identities=14% Similarity=0.109 Sum_probs=532.1
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcC--CchhHHHHHHHHHHHHHHHHhh-cch
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRD--PTLAVRERAVEALRACLRVIEK-RET 230 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D--~~~~VR~aA~~al~~~~~~i~~-r~~ 230 (1874)
+..+++++.+... ..|..|...|+++.+. +.+.+++.++..+.+ +++.||..|+.+|+.++..... ++.
T Consensus 3 l~~~L~~~~s~d~-~~r~~A~~~L~~~~~~-------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (876)
T 1qgr_A 3 LITILEKTVSPDR-LELEAAQKFLERAAVE-------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (876)
T ss_dssp HHHHHHGGGCSCH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHHHhc-------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHH
Confidence 4457777765444 4566666677876643 456788888888877 4689999999999987632100 111
Q ss_pred hhHHHHH-------HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcc--hhHHHHHH
Q 000196 231 RWRVQWY-------YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHR--DRLVRLSI 301 (1874)
Q Consensus 231 ~~~~~~~-------~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~--~~~vr~~~ 301 (1874)
.....|. ..+-+.+..++.+++ ..+ ++++.+++.++...+ ...+.+++++.++..+++. ++.+|..+
T Consensus 75 ~~~~~w~~l~~~~~~~ik~~ll~~l~~~~-~~~-~~~~~~l~~i~~~~~--~~~~w~~ll~~l~~~l~~~~~~~~~r~~a 150 (876)
T 1qgr_A 75 QYQQRWLAIDANARREVKNYVLHTLGTET-YRP-SSASQCVAGIACAEI--PVNQWPELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTTCC-SSS-CHHHHHHHHHHHHHG--GGTCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHhCCCc-HHH-HHHHHHHHHHHHhhC--cccccHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 1122332 234445666776654 355 888889999887431 1234556777788888888 89999999
Q ss_pred HHHhHhHhhhC-hhhHHHHHHHHHHHHHHHhhcCC----CCcchHHHHHHHHHhhchhhhhhh--hHHHHHHHHHhhcCC
Q 000196 302 TSLLPRIAHFL-RDRFVTNYLKICMNHILTVLRIP----AERDSGFIALGEMAGALDGELFHY--LPTITSHLREAIAPR 374 (1874)
Q Consensus 302 ~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~L~~~----~~R~~a~~alg~la~~v~~~~~p~--l~~i~~~l~~~L~~~ 374 (1874)
+.+++.++... ++.| ..+++.+++.+...+.++ ..|..|+.+++.++..++..+... .+.+++.+.+.+.+.
T Consensus 151 l~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~ 229 (876)
T 1qgr_A 151 LEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 229 (876)
T ss_dssp HHHHHHHHHHSCHHHH-GGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCHhhH-HhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 99999998754 4433 458899999999999765 247899999999988777654322 234777777776544
Q ss_pred CCCCCchhHHHHHHHHHHhCCCchHHHH-HHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCC
Q 000196 375 RGKPSLEALACVGNIARAMGPVMEPHVR-GLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYS 453 (1874)
Q Consensus 375 ~~~~~~~a~~~l~~l~~~~g~~~~p~l~-~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~ 453 (1874)
+.+.+..++.|++.++...++.+.||+. .+++.++....++
T Consensus 230 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------------------------- 271 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-------------------------------------- 271 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC--------------------------------------
Confidence 4344567999999999999888999998 7777765321000
Q ss_pred CCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhcc
Q 000196 454 QARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANS 533 (1874)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~ 533 (1874)
++.....|++.+..+.- ...+.. .+ +.+ +. .. ...
T Consensus 272 ------------------------~~~v~~~al~~l~~l~~-------~~~~~~---~~--~~~----~~---~~--~~~ 306 (876)
T 1qgr_A 272 ------------------------IDEVALQGIEFWSNVCD-------EEMDLA---IE--ASE----AA---EQ--GRP 306 (876)
T ss_dssp ------------------------SHHHHHHHHHHHHHHHH-------HHHHHH---HH--HHH----HH---HH--SSC
T ss_pred ------------------------chHHHHHHHHHHHHHHH-------HHHhHh---hh--hcc----cc---cc--CCC
Confidence 11112233333332200 000000 00 000 00 00 000
Q ss_pred CCCCcccccccccccccccchhHHHHHHHHHHHHHHhc------CCChhHHHHHHHhccCC-CCcchhhccHhhHHHHHH
Q 000196 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA------DADVTVRHSIFSSLYGN-RGFDDFLAQADCLSAIFA 606 (1874)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~------d~~~~vR~~~l~~l~~~-~~f~~~L~~~~~l~~L~~ 606 (1874)
+.. .........+..+++.++..... |.++.+|.++..+|..- ..+.... -+.+++.+..
T Consensus 307 ~~~------------~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~l~~l~~ 373 (876)
T 1qgr_A 307 PEH------------TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKE 373 (876)
T ss_dssp CSS------------CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHH
T ss_pred ccc------------hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh-HHHHHHHHHH
Confidence 000 00001122345555555554322 45678999887777410 0011111 2356777778
Q ss_pred HhCCCCHHHHHHHHHHHHhhhcCCc-CccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc--cccchHH
Q 000196 607 ALNDEDFDVREYAISVAGRLSEKNP-AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL--IRPYIAP 683 (1874)
Q Consensus 607 ~l~D~~~~VR~~a~~~l~~l~~~~p-~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~--~~py~~~ 683 (1874)
.++|+++.+|.+|+.++|.++...+ ..+.|++..++..++..+.+ ..+..|..|+++++.+++..+.. ..+|++.
T Consensus 374 ~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~ 451 (876)
T 1qgr_A 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD--PSVVVRDTAAWTVGRICELLPEAAINDVYLAP 451 (876)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH
T ss_pred HccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhCchhcccHHHHHH
Confidence 8899999999999999999998765 44556666655555555543 57889999999999999988765 4699999
Q ss_pred HHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc--------------cchhhcHHhHHHHHHHHHhcCc--chhhH
Q 000196 684 IHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG--------------FGMRQYISELMPLIVEALLDGA--AVTKR 747 (1874)
Q Consensus 684 il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g--------------~~~~~~~~~llp~l~~~l~d~~--~~~~r 747 (1874)
+++.++..+.+ .+.++..++.+++.++...+ ..+.||++.++|.++..+.+.. +...|
T Consensus 452 ~l~~l~~~l~~------~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r 525 (876)
T 1qgr_A 452 LLQCLIEGLSA------EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp HHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred HHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHH
Confidence 99999999875 37788999999999988755 4589999999999999998642 34688
Q ss_pred HHHHHHHHHHHhhccccccccccchHHHHHHHHHhcC----------CCC----HHHHHHHHHHHHHhcccCc-cchhhh
Q 000196 748 EVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG----------ELV----WSTRREVLKVLGIMGALDP-HAHKRN 812 (1874)
Q Consensus 748 ~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~----------~~~----~~vr~~al~~lg~lgaldp-~~~~~~ 812 (1874)
..++.+++.++...|....+|. +.+++.++..+.. +.+ +.+|..++.+++.+...-+ .
T Consensus 526 ~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~----- 598 (876)
T 1qgr_A 526 SSAYESLMEIVKNSAKDCYPAV--QKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQ----- 598 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHH--HHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHH-----
T ss_pred HHHHHHHHHHHHHCchhhHHHH--HHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChh-----
Confidence 8999999999999887555543 4666666665542 112 4567777777776531100 0
Q ss_pred cccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCc-hhhHHHHHHHHHHHHHHhCC
Q 000196 813 QQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGL 891 (1874)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~-~~~~~~v~~al~~i~~~~~~ 891 (1874)
+ .. -|...+++.|+.++++++. ...+..++.++..++...|.
T Consensus 599 -----------------------------~-------~~-~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~ 641 (876)
T 1qgr_A 599 -----------------------------D-------AL-QISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGG 641 (876)
T ss_dssp -----------------------------H-------HH-TTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGG
T ss_pred -----------------------------h-------hh-HHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHh
Confidence 0 00 1346688889999987631 24577899999999999999
Q ss_pred CCCCCccchhHHHHHHHhcC-CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHH
Q 000196 892 GCVPYLPKVLPDLFHTVRTC-DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLV 970 (1874)
Q Consensus 892 ~~~~~l~~ilp~ll~~l~~~-~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i 970 (1874)
.+.||++.++|.++..+++. ++.+|..++..++.++..++.++.||++.+++.+.+.+...+... + ....++.++
T Consensus 642 ~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~---~-~~~~~~~~l 717 (876)
T 1qgr_A 642 EFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHR---S-VKPQILSVF 717 (876)
T ss_dssp GGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCG---G-GHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccH---H-hhHHHHHHH
Confidence 99999999999999999987 778999999999999999999999999999999999997632111 1 234788999
Q ss_pred HHHHHHhhhhhhccchhhHHHHHHhcccccccCc-------hhhHHHHHHHHH----HHhc----------chhhhhhhh
Q 000196 971 QQLCLALNDEFRTHLPVILPCCIQVLSDAERCND-------YTYVLDILHTLE----VFGG----------TLDEHMHLL 1029 (1874)
Q Consensus 971 ~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~-------~~~~~~il~~l~----~~g~----------~~~~~~~~i 1029 (1874)
+.++..+|.+|.+|++.++|.+++.+.......+ ......++.++. .+|. .+.+|++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 9999999999999999999999998863210001 122233444443 3443 355677777
Q ss_pred HHHHHHhhcCCC-cHHHHHHHHHHHHhhcccc---cccch-hHhHHHHHHH-HhCCCCHHHHHHHHHHHHHHHH
Q 000196 1030 LPALIRLFKVDA-PVDIRRAAIETLTRLIPRV---QVTGH-ISSLVHHLKL-VLDGKNDELRKDAVDALCCLAH 1097 (1874)
Q Consensus 1030 lp~l~~~~~~~~-~~~vr~~ai~~l~~l~~~~---~~~~~-~~~ii~~l~~-~l~~~~~~l~~~al~~L~~l~~ 1097 (1874)
++.+........ +..+|..|+.+||.++... .+.+| .+.+++++++ .+.++++++|..|..+++.+..
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 766666554433 6899999999999998864 45677 6788999998 9988899999999999998874
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=1.7e-30 Score=361.89 Aligned_cols=758 Identities=13% Similarity=0.158 Sum_probs=532.5
Q ss_pred HHHHHHHhh-cccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHhh----
Q 000196 110 KFSNYMRTV-FEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-RVEYRRFAAVLILKEMAEN---- 183 (1874)
Q Consensus 110 ~~~~~L~~~-l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~-~~~~~r~aA~~~l~~la~~---- 183 (1874)
.+...|... +. .|.++++.|.+.|..+... ..+++.. .+++.+.++ .+...|+.|...|+.....
T Consensus 5 ~l~~~L~~~~~s--~d~~~r~~Ae~~L~~~~~~---~~~~~~~----~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~ 75 (861)
T 2bpt_A 5 EFAQLLENSILS--PDQNIRLTSETQLKKLSND---NFLQFAG----LSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 (861)
T ss_dssp HHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHH---CHHHHHH----HHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred HHHHHHHHcccC--cCHHHHHHHHHHHHHHHhh---CHHHHHH----HHHHHHhCCCCChHHHHHHHHHHHhhccCcChH
Confidence 455667676 63 4899999999999887652 1233433 344444433 4567888888888876422
Q ss_pred --------cCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCCh
Q 000196 184 --------AST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV 254 (1874)
Q Consensus 184 --------~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~ 254 (1874)
.+. .=......|.+.++..|.++++.||..++.+++.+..... + ...| ..+++.+...+.++.+.
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~---p--~~~w-~~ll~~L~~~l~~~~~~ 149 (861)
T 2bpt_A 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL---P--HGAW-PELMKIMVDNTGAEQPE 149 (861)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---G--GTCC-HHHHHHHHHHTSTTSCH
T ss_pred HHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC---c--cccc-HHHHHHHHHHHhcCCCH
Confidence 111 1123455677888899999999999999999988765421 1 0123 45777777777765246
Q ss_pred hHHHHHHHHHHHHHHcchhh---hHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHH-HHHHHHHHHHH
Q 000196 255 HSIHGSLLAVGELLRNTGEF---MMSRYREVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFV-TNYLKICMNHI 328 (1874)
Q Consensus 255 ~~~~~al~~l~~ll~~~~~~---~~~~~~~i~~~ll~~~~~~--~~~vr~~~~~~i~~la~~~~~~f~-~~yl~~~~~~L 328 (1874)
.++++++.+++.+.+..+.. +.++...++..++..+.+. ++.||.+++.++..+..+....+. ..+.+.+++.+
T Consensus 150 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 229 (861)
T 2bpt_A 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Confidence 88999999999999843322 5677888888888888876 789999999999988766554332 11234466666
Q ss_pred HHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhH-HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHH
Q 000196 329 LTVLRIPA--ERDSGFIALGEMAGALDGELFHYLP-TITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLL 405 (1874)
Q Consensus 329 l~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~-~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll 405 (1874)
...+..+. .|..|+.+++.++...++.+.+|++ .+++.+...+.+...+.+..++++|+.+++... +..
T Consensus 230 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~-----~~~--- 301 (861)
T 2bpt_A 230 CEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEI-----DIA--- 301 (861)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH-----HHH---
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-----hhh---
Confidence 66665443 5789999999999998888889998 888888877765433333456666665554310 000
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHH
Q 000196 406 DIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLA 485 (1874)
Q Consensus 406 ~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 485 (1874)
.. .. . +
T Consensus 302 --~~---------------------------~~-----~---------------------------------~------- 307 (861)
T 2bpt_A 302 --YE---------------------------LA-----Q---------------------------------F------- 307 (861)
T ss_dssp --HH---------------------------HH-----H---------------------------------C-------
T ss_pred --hh---------------------------hh-----h---------------------------------c-------
Confidence 00 00 0 0
Q ss_pred HHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHH
Q 000196 486 LQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKL 565 (1874)
Q Consensus 486 l~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~L 565 (1874)
+.. +. . .++ . ....+..+++.+
T Consensus 308 ----~~~---~~-------------~-~~~-~------------------------------------~~~~~~~il~~l 329 (861)
T 2bpt_A 308 ----PQS---PL-------------Q-SYN-F------------------------------------ALSSIKDVVPNL 329 (861)
T ss_dssp ----TTC---SC-------------C-CCC-H------------------------------------HHHHHHHHHHHH
T ss_pred ----cCC---ch-------------h-hHH-H------------------------------------HHHHHHHHHHHH
Confidence 000 00 0 000 0 001122233323
Q ss_pred HHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHH
Q 000196 566 LIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQL 645 (1874)
Q Consensus 566 l~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~ 645 (1874)
+.. +.+++ . +. .|+++.+|..+..+++.++...|..+.|.+.+.+.+.
T Consensus 330 l~~-l~~~~--------------~--d~---------------~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~ 377 (861)
T 2bpt_A 330 LNL-LTRQN--------------E--DP---------------EDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQN 377 (861)
T ss_dssp HHH-TTCCC--------------C--C----------------CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHH-HHhcc--------------c--cc---------------ccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence 221 11110 0 00 1334577778888888877776655555444333322
Q ss_pred HHHHhhCCCChHhHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccch-
Q 000196 646 LTYLEQSSADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGM- 723 (1874)
Q Consensus 646 l~~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~- 723 (1874)
..+ .+++.|+.|+.+++.+++.++ ..+.+|++.+++.+++.+.++ ++.|+.+++.++|.++...+..+
T Consensus 378 ----l~~-~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 378 ----ITA-DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ-----SLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp ----TTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred ----cCC-CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHHHHhhhhcC
Confidence 233 567888888888888887764 667888899999999998875 78899999999999999887655
Q ss_pred -hhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc----ccccccccchHHHHHHHHHhcCCC-CHHHHHHHHHH
Q 000196 724 -RQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG----YVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKV 797 (1874)
Q Consensus 724 -~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~----~~i~p~~~~p~ll~~Ll~~l~~~~-~~~vr~~al~~ 797 (1874)
.+|++.++|.++..+.|. ..+|..|+++|+.+++..+ ..+.||. |.+++.|+..+++.. ++.+|..++++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 679999999999999874 7899999999999999876 4466764 789999999997533 37899999999
Q ss_pred HHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccC---------
Q 000196 798 LGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRD--------- 868 (1874)
Q Consensus 798 lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d--------- 868 (1874)
+|.+....+.. ...| ...+++.++..|.+
T Consensus 524 l~~l~~~~~~~-----------------------------------------~~~~-~~~l~~~l~~~l~~~~~~~~~i~ 561 (861)
T 2bpt_A 524 LTTMVEYATDT-----------------------------------------VAET-SASISTFVMDKLGQTMSVDENQL 561 (861)
T ss_dssp HHHHHHHCCGG-----------------------------------------GHHH-HHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHcchh-----------------------------------------hHHH-HHHHHHHHHHHHHHHHhhhcccC
Confidence 99876422210 0011 12233333333321
Q ss_pred -----CCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHHhHHHhHHHHH
Q 000196 869 -----PSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQHIRKYLQELF 942 (1874)
Q Consensus 869 -----~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~~~i~~y~~~i~ 942 (1874)
......+..+++++..+++.+|..+.||++.++|.++..++..+. .+++.++..++.++...+.++.||++.++
T Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~ 641 (861)
T 2bpt_A 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFS 641 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 112235567899999999999998899999999999999998876 89999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccc-cCchhhHHHHHHHHH-HHhc
Q 000196 943 SLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAER-CNDYTYVLDILHTLE-VFGG 1020 (1874)
Q Consensus 943 ~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~-~~~~~~~~~il~~l~-~~g~ 1020 (1874)
+.+.+.++..+ + . ....++.+++.++..+++.|.||++.++|.+++.+++.+. ..-+..+..++..+. .+|.
T Consensus 642 ~~l~~~l~~~~-~----~-vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 642 PYLLKALNQVD-S----P-VSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHCTT-S----H-HHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhcccc-H----H-HHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 99999986433 1 1 2236788999999999999999999999999999975321 111333334444333 4688
Q ss_pred chhhhhhhhHHHHHHhhcCCC----------cHHHHHHHHHHHHhhccccc-----ccchhHhHHHHHHHHhCCC----C
Q 000196 1021 TLDEHMHLLLPALIRLFKVDA----------PVDIRRAAIETLTRLIPRVQ-----VTGHISSLVHHLKLVLDGK----N 1081 (1874)
Q Consensus 1021 ~~~~~~~~ilp~l~~~~~~~~----------~~~vr~~ai~~l~~l~~~~~-----~~~~~~~ii~~l~~~l~~~----~ 1081 (1874)
.+.+|+..++|.+.+.+.... ...+|..++++++.++.... +.+|++.+++.+.+.+.+. +
T Consensus 716 ~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~ 795 (861)
T 2bpt_A 716 DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSE 795 (861)
T ss_dssp GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCc
Confidence 899999999999999886421 14689999999999987654 7889999999999988653 7
Q ss_pred HHHHHHHHHHHHHHHHHh-ccccccchh-hHHHHHHh
Q 000196 1082 DELRKDAVDALCCLAHAL-GEDFTIFIP-SIHKLLLK 1116 (1874)
Q Consensus 1082 ~~l~~~al~~L~~l~~~~-g~~f~~~ip-~i~~~l~~ 1116 (1874)
.++|..|+.+|+.++..+ |.+|.+|++ .+.+.+.+
T Consensus 796 ~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~ 832 (861)
T 2bpt_A 796 DATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIK 832 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHH
Confidence 789999999999999999 999999998 77777665
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=9e-31 Score=376.62 Aligned_cols=959 Identities=14% Similarity=0.145 Sum_probs=615.9
Q ss_pred HHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChH-----HHHHHHHHHHHHHHhhhc-CCChhhhhhHHHHHhHh
Q 000196 24 DALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGE-----AFSRFMDQLYDRISGLLE-SNDAAENLGALRAIDEL 96 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~-----~~~~~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~l 96 (1874)
.++..+++.|.+.....|. |+..|..++. .+.++ ....+++++.+.+.+.++ ++++..|.+|+.++..+
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~----~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIG----ELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHH----HCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHH----hCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 4555666666665554443 5666665553 33332 245678888888888887 58899999999999999
Q ss_pred hccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHH
Q 000196 97 IDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLI 176 (1874)
Q Consensus 97 i~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~ 176 (1874)
+...+....+....+.+.+...+. ..+..|++.|..+++.++...+. ++++..++.+++.|..+.++..|.+|+.+
T Consensus 162 ~~~~~~~l~~~~~~ll~~l~~~L~-~~~~~vR~~a~~al~~l~~~~~~---~~~~~~l~~l~~~L~~~~~~~~r~~a~~~ 237 (1230)
T 1u6g_C 162 LSRQGGLLVNFHPSILTCLLPQLT-SPRLAVRKRTIIALGHLVMSCGN---IVFVDLIEHLLSELSKNDSMSTTRTYIQC 237 (1230)
T ss_dssp HHHTCSSCTTTHHHHHHHHGGGGG-CSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 865322233455666777777775 45789999999999999986332 23344455566666544335678889999
Q ss_pred HHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccC------
Q 000196 177 LKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGR------ 250 (1874)
Q Consensus 177 l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~------ 250 (1874)
++.++...|..|.+|++.+++.++..+.|+++.||+.|..+++.+...... ....++..+++.+...+..
T Consensus 238 l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~l~~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 238 IAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK----EVYPHVSTIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC----CCHHHHHHHHHHHTTCCCCC-----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH----HHHHhHHHHHHHHHHHhCCCCCCCC
Confidence 999999999999999999999999999999999999999999988765431 1123556666666554421
Q ss_pred ------------------------------CCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHH
Q 000196 251 ------------------------------NAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLS 300 (1874)
Q Consensus 251 ------------------------------~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~ 300 (1874)
...|++|.+|+.+++.+....++.+.+++.+++..++..+.++++.||.+
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 393 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD 393 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 01367899999999999987777788999999998888888899999999
Q ss_pred HHHHhHhHhhhC------------------hhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh
Q 000196 301 ITSLLPRIAHFL------------------RDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL 360 (1874)
Q Consensus 301 ~~~~i~~la~~~------------------~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l 360 (1874)
++.+++.+.... +....+.+++.+++.+...++++. .|..++.++|.++...+..+.+|+
T Consensus 394 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l 473 (1230)
T 1u6g_C 394 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI 473 (1230)
T ss_dssp HHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH
T ss_pred HHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH
Confidence 999988776532 123345677888888888887654 578899999999998877788999
Q ss_pred HHHHHHHHHhhcCCCC--CCCchhHHHHHHHHHHhCCC-chHHHHHHHHHHHhcC--CCHH----HHHHHHHHHHhCCC-
Q 000196 361 PTITSHLREAIAPRRG--KPSLEALACVGNIARAMGPV-MEPHVRGLLDIMFSAG--LSTT----LVDALEQITVSIPS- 430 (1874)
Q Consensus 361 ~~i~~~l~~~L~~~~~--~~~~~a~~~l~~l~~~~g~~-~~p~l~~ll~~ll~~~--ls~~----l~~~l~~i~~~~p~- 430 (1874)
+.+++.+...+.+... ..+..++.+++.+....|+. |.||++.++|.++.+- -+.. ...++..+++.+.+
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~ 553 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL 553 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999977653 23457888888888888875 9999999999988642 2222 23345555555432
Q ss_pred ------ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccc-ccCCCcchhhH
Q 000196 431 ------LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARF-NFKGHDLLEFA 503 (1874)
Q Consensus 431 ------l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~-~f~~~~l~~~v 503 (1874)
-.....+.++..+...+... ..+.+....|+.++|.+ ...|..+.+++
T Consensus 554 ~~~~~~~~~~~~~~ll~~ll~~l~~~-------------------------d~~~~vr~~a~~~lg~L~~~~g~~~~~~~ 608 (1230)
T 1u6g_C 554 DQPSSFDATPYIKDLFTCTIKRLKAA-------------------------DIDQEVKERAISCMGQIICNLGDNLGSDL 608 (1230)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHSCS-------------------------SSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhcc-------------------------CCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence 11222334444433222110 01223445677777776 22244455555
Q ss_pred HHHHhhhcc-CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHH
Q 000196 504 RDSVVLYLD-DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIF 582 (1874)
Q Consensus 504 ~~~~~~~l~-~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l 582 (1874)
..++..+.+ -.++.+|..++.++..+...... ......+..+++.|.. .+.++++.+|..++
T Consensus 609 ~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~----------------~~~~~~~~~i~~~L~~-~l~~~~~~~r~~a~ 671 (1230)
T 1u6g_C 609 PNTLQIFLERLKNEITRLTTVKALTLIAGSPLK----------------IDLRPVLGEGVPILAS-FLRKNQRALKLGTL 671 (1230)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSC----------------CCCHHHHHHHHHHHHH-HTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhCccc----------------cchHHHHHHHHHHHHH-HHHhCCHHHHHHHH
Confidence 554432222 12456888888888776542110 0134567777776655 56789999999998
Q ss_pred HhccCC-CCcchhhccHhhHHHH---HHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCC-ChH
Q 000196 583 SSLYGN-RGFDDFLAQADCLSAI---FAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSA-DNK 657 (1874)
Q Consensus 583 ~~l~~~-~~f~~~L~~~~~l~~L---~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~-~~~ 657 (1874)
.+++.- ......+....+.+.+ ...++|++.+++..++.+|+.+.+.+|..+.+++..++..++..+... . ...
T Consensus 672 ~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~ 750 (1230)
T 1u6g_C 672 SALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSP-LLQGG 750 (1230)
T ss_dssp HHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCT-TCCHH
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCc-ccchH
Confidence 888510 0000001112222222 234578899999999999999999998776555555555555444433 1 111
Q ss_pred hHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHH
Q 000196 658 CREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEA 737 (1874)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~ 737 (1874)
.......++..++...+. .+.++.+++.++..+..+........+...+..++|.+....|+... .+++.++..
T Consensus 751 ~~~~l~~~~~~l~~~~~~--~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~----~~~~~~~~~ 824 (1230)
T 1u6g_C 751 ALSAMLDFFQALVVTGTN--NLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP----AVVGQFIQD 824 (1230)
T ss_dssp HHHHHHHHHHHHHTTCCT--TCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSH----HHHTTTTTT
T ss_pred HHHHHHHHHHHHHhcCCC--CCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhH----HHHHHHHHH
Confidence 111111222233332211 34667777777654432110001334566778899999888777654 344445555
Q ss_pred HhcC-cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccC
Q 000196 738 LLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLS 816 (1874)
Q Consensus 738 l~d~-~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~ 816 (1874)
+++. .+...+..++.++|.+....+ +.+ +|++.+.+...+.+. ++.||.+|..++|.++.-.
T Consensus 825 ~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~---~~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~----------- 887 (1230)
T 1u6g_C 825 VKNSRSTDSIRLLALLSLGEVGHHID--LSG---QLELKSVILEAFSSP-SEEVKSAASYALGSISVGN----------- 887 (1230)
T ss_dssp TTTTTCCHHHHHHHHHHHHHHHHHSC--CCS---CTHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHT-----------
T ss_pred hCCCCccHHHHHHHHHHHHHhcccCC--Ccc---cccHHHHHHHHhCCC-CHHHHHHHHHHhHHHhccC-----------
Confidence 5432 244567788888888754322 222 478999999999765 8999999999999875200
Q ss_pred CCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhC-CCCCC
Q 000196 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMG-LGCVP 895 (1874)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~-~~~~~ 895 (1874)
....++.+++.+.+. ........+++..++...+ ....|
T Consensus 888 --------------------------------------~~~~lp~ll~~l~~~--~~~~~~~l~al~e~i~~~~~~~~~~ 927 (1230)
T 1u6g_C 888 --------------------------------------LPEYLPFVLQEITSQ--PKRQYLLLHSLKEIISSASVVGLKP 927 (1230)
T ss_dssp --------------------------------------HHHHHHHHHHHHHSC--GGGHHHHHHHHHHHHHSSCSTTTHH
T ss_pred --------------------------------------HHHHHHHHHHHHhcc--chhhHHHHHHHHHHHhcCChhhHHh
Confidence 012344555555443 2334567788888887653 34457
Q ss_pred CccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHH
Q 000196 896 YLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCL 975 (1874)
Q Consensus 896 ~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~ 975 (1874)
|.++|.+.++..+...+...|..+...+|.++.... ..++| .+.+.+...+ +.....++.++..+..
T Consensus 928 ~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~---~~l~p----~l~~~l~~~~------~~~R~~~~~~l~~~~~ 994 (1230)
T 1u6g_C 928 YVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP---ETLLP----RLKGYLISGS------SYARSSVVTAVKFTIS 994 (1230)
T ss_dssp HHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG---GGTHH----HHTTTSSSSC------HHHHHHHHHHTGGGCC
T ss_pred hHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh---HHHHH----HHHHHhcCCC------HHHHHHHHHHHHHHHc
Confidence 888888888887766666688888788888765432 23444 3444444322 0011123333332222
Q ss_pred HhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHH-HhcchhhhhhhhHHHHHHhhcC---------------
Q 000196 976 ALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEV-FGGTLDEHMHLLLPALIRLFKV--------------- 1039 (1874)
Q Consensus 976 ~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~-~g~~~~~~~~~ilp~l~~~~~~--------------- 1039 (1874)
..+..+.+|++.++|.++..+++++.. -|..+...+.++.. -+..+.+++..++|.+.+....
T Consensus 995 ~~~~~~~~~l~~~~~~ll~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~ 1073 (1230)
T 1u6g_C 995 DHPQPIDPLLKNCIGDFLKTLEDPDLN-VRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKH 1073 (1230)
T ss_dssp SSCCTHHHHHHHHSTTTHHHHSSSSTH-HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEE
T ss_pred cCchhhHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCccc
Confidence 334567788999999999999764421 13334444443333 2345567888889988876521
Q ss_pred --CCcHHHHHHHHHHHHhhcccc-cccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHh
Q 000196 1040 --DAPVDIRRAAIETLTRLIPRV-QVTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1040 --~~~~~vr~~ai~~l~~l~~~~-~~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~ 1116 (1874)
+...++|+.|.+++..+...- +-.+ +..++..++..|.+ +.+++..+...|..|+..-......+++.+...+.+
T Consensus 1074 ~vd~~l~~rk~a~~~~~~ll~~~~~~i~-~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 1151 (1230)
T 1u6g_C 1074 TVDDGLDIRKAAFECMYTLLDSCLDRLD-IFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRA 1151 (1230)
T ss_dssp EEETHHHHHHHHHHHHHHHHHSSCSSSC-HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCHHHHTTTTTTHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHcccCc-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 122489999999999997651 1111 44455556677776 589999999999999887766666666666665544
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=5e-30 Score=357.20 Aligned_cols=774 Identities=13% Similarity=0.115 Sum_probs=527.0
Q ss_pred CcHHHHHHHHHHH-cCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhh
Q 000196 21 GSLDALNRILADL-CTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELI 97 (1874)
Q Consensus 21 ~~~~~~~~~~~~L-~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li 97 (1874)
|.+..+.+++.++ .+++.+.++ |...|..+-. ++...++..+.+. +.++ .+...|..|...+...+
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~--------~~~~~~~~~l~~i---l~~~~~~~~vR~~A~~~lk~~i 69 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSN--------DNFLQFAGLSSQV---LIDENTKLEGRILAALTLKNEL 69 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHH--------HCHHHHHHHHHHH---HTCTTSCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHh--------hCHHHHHHHHHHH---HhCCCCChHHHHHHHHHHHhhc
Confidence 5677889999999 888655554 6555544321 1123344334332 2233 46777888888888876
Q ss_pred ccccC-------------cchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC--CCcchHHHHHHHHHHHhhhc
Q 000196 98 DVALG-------------ENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG--GAMTADEVEFQVKMALDWLR 162 (1874)
Q Consensus 98 ~~~~~-------------~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~--g~~~~~~v~~~~~~~~~~l~ 162 (1874)
...-. -.......+-+.|...+. ..+..++..++.+++.++... +..++++++. +++.+.
T Consensus 70 ~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~----L~~~l~ 144 (861)
T 2bpt_A 70 VSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLIAAIADIELPHGAWPELMKI----MVDNTG 144 (861)
T ss_dssp CCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHH----HHHHTS
T ss_pred cCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHHHhhCcccccHHHHHH----HHHHHh
Confidence 43100 000111122234444453 457899999999999998862 2357666555 444555
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCcc---chhchHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTV---FNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWY 237 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~---~~~~l~~il~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~ 237 (1874)
+++++..|++|+.+++.+++..+.. +.++++.+++.+..++.|+ ++.||.+|.++++.++..+...... ... .
T Consensus 145 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~-~~~-~ 222 (861)
T 2bpt_A 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMER-EGE-R 222 (861)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS-HHH-H
T ss_pred cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccC-hhH-H
Confidence 4436788999999999999875543 6789999999999999998 8999999999999876554321110 001 1
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~--- 313 (1874)
..+++.+...+.++ ++++|++++.+++.++...++.+.+++. .++..++..+.+.++.||..++..+..++....
T Consensus 223 ~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 301 (861)
T 2bpt_A 223 NYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIA 301 (861)
T ss_dssp HHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 22444444445554 5889999999999999988888889999 899988888889999999999999998886531
Q ss_pred -------------hhHHHHHHHHHHHHHHHhhcCCC---------CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhh
Q 000196 314 -------------DRFVTNYLKICMNHILTVLRIPA---------ERDSGFIALGEMAGALDGELFHYLPTITSHLREAI 371 (1874)
Q Consensus 314 -------------~~f~~~yl~~~~~~Ll~~L~~~~---------~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L 371 (1874)
..+...+++.++|.++..++... .|..|..+++.++...|+. .++.+++.+.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~~~l~~~l~~~l 378 (861)
T 2bpt_A 302 YELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---ILEPVLEFVEQNI 378 (861)
T ss_dssp HHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHT
T ss_pred hhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HHHHHHHHHHHHc
Confidence 12455677889999988886421 3567888888888887753 3566777777777
Q ss_pred cCCCCCCCchhHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000196 372 APRRGKPSLEALACVGNIARAMG-PVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1874)
Q Consensus 372 ~~~~~~~~~~a~~~l~~l~~~~g-~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1874)
.+.+.+.+..++.++|.+++..+ ..+.++++.+++.
T Consensus 379 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~------------------------------------------- 415 (861)
T 2bpt_A 379 TADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPS------------------------------------------- 415 (861)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH-------------------------------------------
T ss_pred CCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-------------------------------------------
Confidence 54433334456667666654332 1222333222221
Q ss_pred CCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhh
Q 000196 451 HYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLV 530 (1874)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~ 530 (1874)
+...+.++++.||.+|+.+++.+.
T Consensus 416 --------------------------------------------------------l~~~l~d~~~~vr~~a~~~l~~l~ 439 (861)
T 2bpt_A 416 --------------------------------------------------------ILNLMNDQSLQVKETTAWCIGRIA 439 (861)
T ss_dssp --------------------------------------------------------HHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------HHHHcCCCcHHHHHHHHHHHHHHH
Confidence 123344567888887776665553
Q ss_pred hccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCC
Q 000196 531 ANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALND 610 (1874)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D 610 (1874)
..... .+. .. +++ +.+++.++..++|
T Consensus 440 ~~~~~------------------------------------------------~~~-~~---~~~--~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 440 DSVAE------------------------------------------------SID-PQ---QHL--PGVVQACLIGLQD 465 (861)
T ss_dssp HHHGG------------------------------------------------GSC-TT---TTH--HHHHHHHHHHHTS
T ss_pred HHhhh------------------------------------------------hcC-CH---HHH--HHHHHHHHHHhcc
Confidence 21000 000 00 111 2356666667777
Q ss_pred CCHHHHHHHHHHHHhhhcCCc----CccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHH
Q 000196 611 EDFDVREYAISVAGRLSEKNP----AYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHK 686 (1874)
Q Consensus 611 ~~~~VR~~a~~~l~~l~~~~p----~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~ 686 (1874)
+ +.||..|..+++.+++..+ ..+.|++..++..++..+...+.+...|..++.+++.+++..+..+.||+..+++
T Consensus 466 ~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~ 544 (861)
T 2bpt_A 466 H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544 (861)
T ss_dssp C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHH
Confidence 6 7888888888888887643 4566888887766666665431346789999999999999999889999999999
Q ss_pred HHHHHhhccCCC----------CCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHH
Q 000196 687 ALVARLLEGTGI----------NANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQ 756 (1874)
Q Consensus 687 ~ll~~l~~~~~~----------~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~ 756 (1874)
.++..+.+.... +....++..++.+++.++...|..+.||++.++|.++..+++..+..+|+.++.+++.
T Consensus 545 ~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~ 624 (861)
T 2bpt_A 545 FVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHH
Confidence 998887642000 0134567788999999999999999999999999999999876321789999999999
Q ss_pred HHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCc
Q 000196 757 VVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPM 836 (1874)
Q Consensus 757 l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (1874)
++...|..+.||. |.+++.++..++++ ++.+|..++.++|.
T Consensus 625 l~~~~~~~~~~~l--~~i~~~l~~~l~~~-~~~vr~~a~~~l~~------------------------------------ 665 (861)
T 2bpt_A 625 LAASLGKGFEKYL--ETFSPYLLKALNQV-DSPVSITAVGFIAD------------------------------------ 665 (861)
T ss_dssp HHHHHGGGGHHHH--HHHHHHHHHHHHCT-TSHHHHHHHHHHHH------------------------------------
T ss_pred HHHHHhhhHHHHH--HHHHHHHHHHhccc-cHHHHHHHHHHHHH------------------------------------
Confidence 9988887777764 67888888877433 34555554444433
Q ss_pred cccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCC--cc
Q 000196 837 DEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCD--DY 914 (1874)
Q Consensus 837 ~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~--~~ 914 (1874)
+++.+|..+.||++.++|.++..+++.+ +.
T Consensus 666 ------------------------------------------------l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 697 (861)
T 2bpt_A 666 ------------------------------------------------ISNSLEEDFRRYSDAMMNVLAQMISNPNARRE 697 (861)
T ss_dssp ------------------------------------------------HHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTT
T ss_pred ------------------------------------------------HHHHhchhccchHHHHHHHHHHHhCCccccHh
Confidence 3333444445677788888888887654 67
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccc-----cccchhHHHHHHHHHHHhh---hhhhccch
Q 000196 915 LKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR-----TYRGLPVLHLVQQLCLALN---DEFRTHLP 986 (1874)
Q Consensus 915 ~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~-----~~~~~~~l~~i~~l~~~l~---~~f~~yl~ 986 (1874)
+|+.++..++.++..++..+.||++.+++.+.+.......++... ......++.++..++..++ ..|.+|++
T Consensus 698 vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~ 777 (861)
T 2bpt_A 698 LKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVG 777 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHH
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 899999999999999999999999999999988766321100000 0012367788888888887 67999999
Q ss_pred hhHHHHHHhccccc---ccCchhhHHHHHHHHHH-H-hcchhhhhh-hhHHHHHHhhc--CCCcHHHHHHHHHHHHhhc
Q 000196 987 VILPCCIQVLSDAE---RCNDYTYVLDILHTLEV-F-GGTLDEHMH-LLLPALIRLFK--VDAPVDIRRAAIETLTRLI 1057 (1874)
Q Consensus 987 ~llp~ll~~l~~~~---~~~~~~~~~~il~~l~~-~-g~~~~~~~~-~ilp~l~~~~~--~~~~~~vr~~ai~~l~~l~ 1057 (1874)
.+++.+...+.+.+ ...-|..+..++..+.. + |+.+.+|+. .++|.+++.++ .+....++..|-=+++.+.
T Consensus 778 ~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 778 TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 99999999885421 11113445556665544 6 788888888 88999998886 3445667777666666554
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.1e-30 Score=360.94 Aligned_cols=655 Identities=16% Similarity=0.180 Sum_probs=471.3
Q ss_pred CcHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcc
Q 000196 21 GSLDALNRILADLCTHGNP-KEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDV 99 (1874)
Q Consensus 21 ~~~~~~~~~~~~L~s~~~~-~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~ 99 (1874)
.-++++..+++.+.+.+.. ++.|...|..+++........+.+.+.++.+...+.+++++++...|.+|+.++..++..
T Consensus 125 ~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 125 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4577899999999887543 445777788888665433322222344677788888888899999999999999988865
Q ss_pred ccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 100 ALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 100 ~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
..+.....+..+.+.+...+. +.|.++++.|+++|++++...+.....+++..++.++..++ +.++..|..|+.+|..
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~-~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ-DQDENVALEACEFWLT 282 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc-CCcHHHHHHHHHHHHH
Confidence 321112223345555555553 56889999999999999987433333345555555555554 4556789999999999
Q ss_pred HHhh--cCccchhchHHHHHHHHHhh-----------cC-----------CchhHHHHHHHHHHHHHHHHhhcchhhHHH
Q 000196 180 MAEN--ASTVFNVHVAEFVDAIWVAL-----------RD-----------PTLAVRERAVEALRACLRVIEKRETRWRVQ 235 (1874)
Q Consensus 180 la~~--~p~~~~~~l~~il~~i~~~l-----------~D-----------~~~~VR~aA~~al~~~~~~i~~r~~~~~~~ 235 (1874)
+++. +...+.+++..++|.++..+ .| .+..||.+|+.+++.+.....+ .
T Consensus 283 l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-------~ 355 (852)
T 4fdd_A 283 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-------E 355 (852)
T ss_dssp HTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-------G
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-------H
Confidence 9975 33457889999999999988 45 4557899999999988775541 2
Q ss_pred HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000196 236 WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 236 ~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
.+..+++.+...+.++ +|.+|++|+.+++.+.+++++.+.+++.++++.++..+++.++.||.+++.+++.++.+.+..
T Consensus 356 ~~~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 434 (852)
T 4fdd_A 356 LLPHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ 434 (852)
T ss_dssp GHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 3455667676667766 599999999999999998888888999999999999999999999999999999999876544
Q ss_pred HHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 316 FVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 316 f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
....|++.+++.++..|.+.. .|..|+.+++.++...+..+.||++.+++.+...+.....+....+++|++.++...
T Consensus 435 ~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~ 514 (852)
T 4fdd_A 435 PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSV 514 (852)
T ss_dssp CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 345688999999999997543 578999999999999999999999999999999886443222235789999999999
Q ss_pred CCCc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCc
Q 000196 394 GPVM--EPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQ 471 (1874)
Q Consensus 394 g~~~--~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1874)
|+.+ .+|++.++|.+++. + +.+ ..
T Consensus 515 ~~~~~~~~~~~~l~p~l~~~---------~-------------------~~l----~d---------------------- 540 (852)
T 4fdd_A 515 GHHLNKPEYIQMLMPPLIQK---------W-------------------NML----KD---------------------- 540 (852)
T ss_dssp GGGGCCHHHHHHHHHHHHHH---------H-------------------HHS----CT----------------------
T ss_pred hhhhccHHHHHHHHHHHHHH---------H-------------------Hhc----cc----------------------
Confidence 9865 35888888876631 0 000 00
Q ss_pred cccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCccccccccccccc
Q 000196 472 QVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRT 550 (1874)
Q Consensus 472 ~~~~~~~~~~~~~Al~~L~~~~-f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~ 550 (1874)
++. ....++++++.+. --|..+.+|+..++.. |..++.
T Consensus 541 -----~~~-~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~----------------~~~~l~------------------- 579 (852)
T 4fdd_A 541 -----EDK-DLFPLLECLSSVATALQSGFLPYCEPVYQR----------------CVNLVQ------------------- 579 (852)
T ss_dssp -----TCT-THHHHHHHHHHHHHHHGGGGHHHHHHHHHH----------------HHHHHH-------------------
T ss_pred -----ccH-HHHHHHHHHHHHHHHHhHhHHHHHHHHHHH----------------HHHHHH-------------------
Confidence 000 1122344444331 0122334444443211 111110
Q ss_pred ccchhHHHHHHHHH-HHHH----HhcCCChhHHHHHHHhccC-----CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHH
Q 000196 551 GGKRRRLIEELVEK-LLIA----AVADADVTVRHSIFSSLYG-----NRGFDDFLAQADCLSAIFAALNDEDFDVREYAI 620 (1874)
Q Consensus 551 ~~~~~~~~~~vl~~-Ll~~----~~~d~~~~vR~~~l~~l~~-----~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~ 620 (1874)
..+.+ .... ...+++.++|..++..++. +..|.+++..+.+++.++.+++|+++.||+.++
T Consensus 580 ---------~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~ 650 (852)
T 4fdd_A 580 ---------KTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 650 (852)
T ss_dssp ---------HHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHH
T ss_pred ---------HHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHH
Confidence 00000 0000 1122345555554444321 245666664557899999999999999999999
Q ss_pred HHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCC
Q 000196 621 SVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINA 700 (1874)
Q Consensus 621 ~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~ 700 (1874)
.+++.++..+|..+.|++..++..++..+.. ++...|..|++++|.++...+..+.||+..+++.+++.++++. .
T Consensus 651 ~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~--~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~---~ 725 (852)
T 4fdd_A 651 ALLGDLTKACFQHVKPCIADFMPILGTNLNP--EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN---T 725 (852)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHTCCT--TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS---C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC---C
Confidence 9999999999999999999877767766643 4678899999999999999998999999999999999998642 3
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Q 000196 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~ 780 (1874)
...++.+++.++|.|+..+++.+.||++++++.++..|.+..+.++|+.|..+|+.++...+..+ .+.+...+-.
T Consensus 726 ~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~-----~~~~~~~~~~ 800 (852)
T 4fdd_A 726 PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGV-----IQDFIFFCDA 800 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGT-----GGGHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhH-----HHHHHHHHHH
Confidence 56899999999999999988889999999999999999877778899999999999998865432 2334433333
Q ss_pred Hhc-CCCCHHHHHHHHHHHH
Q 000196 781 MLN-GELVWSTRREVLKVLG 799 (1874)
Q Consensus 781 ~l~-~~~~~~vr~~al~~lg 799 (1874)
+.+ .+..++++....+++.
T Consensus 801 ~~~~~~~~~~l~~~~~~~l~ 820 (852)
T 4fdd_A 801 VASWINPKDDLRDMFCKILH 820 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHH
Confidence 332 2235677776666653
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.98 E-value=4e-28 Score=338.66 Aligned_cols=782 Identities=14% Similarity=0.123 Sum_probs=533.5
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCC-CcchhHHHHHHHHHHHHh-------
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGD-RVEYRRFAAVLILKEMAE------- 182 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~-~~~~~r~aA~~~l~~la~------- 182 (1874)
+...|..+. +.|.++++.|.+.|..+... ..+++ +..+++.+.++ .+...|..|..+|+....
T Consensus 3 l~~~L~~~~--s~d~~~r~~A~~~L~~~~~~---~~~~~----~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (876)
T 1qgr_A 3 LITILEKTV--SPDRLELEAAQKFLERAAVE---NLPTF----LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (876)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHHHHH---HHHHH----HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhc---ChhhH----HHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhH
Confidence 344555655 35899999999999887652 12333 33444444433 456789898889888642
Q ss_pred -----hcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCC-ChhH
Q 000196 183 -----NASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNA-PVHS 256 (1874)
Q Consensus 183 -----~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~-~~~~ 256 (1874)
..+..-......+.+.++.+|.++++.+ ..++.+++.++..... ..+| ..+++.+...+.+++ +..+
T Consensus 74 ~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~-----~~~w-~~ll~~l~~~l~~~~~~~~~ 146 (876)
T 1qgr_A 74 AQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP-----VNQW-PELIPQLVANVTNPNSTEHM 146 (876)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG-----GTCC-TTHHHHHHHHHHCTTCCHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCc-----cccc-HHHHHHHHHHHhCCCCCHHH
Confidence 2333334455667778899999998888 8888888887654211 0112 345666666666652 4688
Q ss_pred HHHHHHHHHHHHHc-chhhhHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhChhhHHH-HHHHHHHHHHHHhh
Q 000196 257 IHGSLLAVGELLRN-TGEFMMSRYREVAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLRDRFVT-NYLKICMNHILTVL 332 (1874)
Q Consensus 257 ~~~al~~l~~ll~~-~~~~~~~~~~~i~~~ll~~~~~~--~~~vr~~~~~~i~~la~~~~~~f~~-~yl~~~~~~Ll~~L 332 (1874)
+++++.+++.+.+. .++.+.+++..++..++..+.+. +..+|..++.++..++.+.+..+.. .+.+.+++.+...+
T Consensus 147 r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~ 226 (876)
T 1qgr_A 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (876)
T ss_dssp HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 99999999999884 35566778888888888888776 6889999999999988765543321 11134677777666
Q ss_pred cCCC--CcchHHHHHHHHHhhchhhhhhhhH-HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000196 333 RIPA--ERDSGFIALGEMAGALDGELFHYLP-TITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMF 409 (1874)
Q Consensus 333 ~~~~--~R~~a~~alg~la~~v~~~~~p~l~-~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll 409 (1874)
...+ .|..++.+++.++...++.+.||++ .+++.+...+.+.....+..++++|..+++... .+. .
T Consensus 227 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~-----~~~------~ 295 (876)
T 1qgr_A 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM-----DLA------I 295 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-----HHH------H
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH-----hHh------h
Confidence 5543 4789999999999999988889998 899988887754433334567777777766421 000 0
Q ss_pred hcCCCHHHHHHHHHHHHh-CC--CChHHH---HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHH
Q 000196 410 SAGLSTTLVDALEQITVS-IP--SLLPTI---QDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQ 483 (1874)
Q Consensus 410 ~~~ls~~l~~~l~~i~~~-~p--~l~~~i---~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (1874)
. ..+. ..+. .| .....+ .+.++ .
T Consensus 296 ~------~~~~---~~~~~~~~~~~~~~~~~~~~~ll------------------------------------------~ 324 (876)
T 1qgr_A 296 E------ASEA---AEQGRPPEHTSKFYAKGALQYLV------------------------------------------P 324 (876)
T ss_dssp H------HHHH---HHHSSCCSSCCCCHHHHHHHHHH------------------------------------------H
T ss_pred h------hccc---cccCCCccchhHHHHHHHHHHHh------------------------------------------H
Confidence 0 0000 0000 00 000000 00000 0
Q ss_pred HHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHH
Q 000196 484 LALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVE 563 (1874)
Q Consensus 484 ~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 563 (1874)
..++.|.... .-.+++++.+|++|+.++..+..... ...+..+++
T Consensus 325 ~ll~~l~~~~---------------~d~~~~~~~~r~~a~~~l~~l~~~~~--------------------~~~~~~~l~ 369 (876)
T 1qgr_A 325 ILTQTLTKQD---------------ENDDDDDWNPCKAAGVCLMLLATCCE--------------------DDIVPHVLP 369 (876)
T ss_dssp HHHHHTTCCC---------------SSCCTTCCCHHHHHHHHHHHHHHHHG--------------------GGGHHHHHH
T ss_pred HHHHHhhccc---------------ccccccccHHHHHHHHHHHHHHHHCc--------------------HhhHHHHHH
Confidence 0111111000 00023467899999888877764221 122455665
Q ss_pred HHHHHHhcCCChhHHHHHHHhccC-CCC-----cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc--c
Q 000196 564 KLLIAAVADADVTVRHSIFSSLYG-NRG-----FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV--L 635 (1874)
Q Consensus 564 ~Ll~~~~~d~~~~vR~~~l~~l~~-~~~-----f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v--~ 635 (1874)
.+ ...+.|+++.+|.+++.+|+. ... +.+++ +.+++.++..++|+++.||..|+.++++++...+..+ .
T Consensus 370 ~l-~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 446 (876)
T 1qgr_A 370 FI-KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND 446 (876)
T ss_dssp HH-HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred HH-HHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence 44 345789999999999988852 111 22233 4578889999999999999999999999999887653 4
Q ss_pred hHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc--------------cccccchHHHHHHHHHHhhccCCCCCC
Q 000196 636 PALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--------------RLIRPYIAPIHKALVARLLEGTGINAN 701 (1874)
Q Consensus 636 p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--------------~~~~py~~~il~~ll~~l~~~~~~~~~ 701 (1874)
|++..++..++..+.+ +++.|+.++++|+.+++.++ +.+.||++.+++.+++.+.+... .+
T Consensus 447 ~~l~~~l~~l~~~l~~---~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~ 521 (876)
T 1qgr_A 447 VYLAPLLQCLIEGLSA---EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQ 521 (876)
T ss_dssp TTHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CS
T ss_pred HHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--ch
Confidence 7788877777776643 37789999999999998754 45889999999999999886421 24
Q ss_pred hhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcC----------cc----hhhHHHHHHHHHHHHhhcc-cccc
Q 000196 702 NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDG----------AA----VTKREVAVSTLGQVVQSTG-YVIT 766 (1874)
Q Consensus 702 ~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~----------~~----~~~r~~A~~~Lg~l~~~~~-~~i~ 766 (1874)
..++..++.+++.++...|..+.+|+..++|.+++.+.+. .+ .+.|..++.+|+.++...| ..+.
T Consensus 522 ~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 601 (876)
T 1qgr_A 522 NNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL 601 (876)
T ss_dssp TTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh
Confidence 5788889999999999999999999999999999988641 11 3457788999999999998 7778
Q ss_pred ccccchHHHHHHHHHhcCCCC-HHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCC
Q 000196 767 PYNEYPQLLGLLLKMLNGELV-WSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWP 845 (1874)
Q Consensus 767 p~~~~p~ll~~Ll~~l~~~~~-~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 845 (1874)
||. |.+++.+++.+++... +.+|..++.++|.+..-..
T Consensus 602 ~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~--------------------------------------- 640 (876)
T 1qgr_A 602 QIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG--------------------------------------- 640 (876)
T ss_dssp TTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG---------------------------------------
T ss_pred HHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH---------------------------------------
Confidence 875 7899999999976531 4789999999887642000
Q ss_pred CCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcC--CcchhHHHHHHH
Q 000196 846 SFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTC--DDYLKDYITWKL 923 (1874)
Q Consensus 846 ~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~--~~~~~~~~~~~l 923 (1874)
.....|+ ..+++.|...|.+.........++.++..+.+..|..+.||++.+++.++..+.+. +..++..++..+
T Consensus 641 --~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l 717 (876)
T 1qgr_A 641 --GEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVF 717 (876)
T ss_dssp --GGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHH
T ss_pred --hhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHH
Confidence 0011233 44668888888876444567788999999999999888899999999999999873 456899999999
Q ss_pred HHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccc-----cccchhHHHHHHHHHHHhh----------hhhhccchhh
Q 000196 924 GTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNR-----TYRGLPVLHLVQQLCLALN----------DEFRTHLPVI 988 (1874)
Q Consensus 924 ~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~-----~~~~~~~l~~i~~l~~~l~----------~~f~~yl~~l 988 (1874)
|.++..+|..+.+|++.+++.+.+.......++... ......++.++..++..++ ..|.||++.+
T Consensus 718 ~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 718 GDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 999999999999999999999988765331000000 0112246777777777766 3689999999
Q ss_pred HHHHHHhccccc-ccCchhhHHHHHHHHH-HHhc-chhhh-hhhhHHHHHH-hhcCCCcHHHHHHHHHHHHhhcc
Q 000196 989 LPCCIQVLSDAE-RCNDYTYVLDILHTLE-VFGG-TLDEH-MHLLLPALIR-LFKVDAPVDIRRAAIETLTRLIP 1058 (1874)
Q Consensus 989 lp~ll~~l~~~~-~~~~~~~~~~il~~l~-~~g~-~~~~~-~~~ilp~l~~-~~~~~~~~~vr~~ai~~l~~l~~ 1058 (1874)
++.+...+.+.+ ...-|..+..++..+. .+|. .+.+| ...++|.+++ .+.. .+..+|..|..++|.+++
T Consensus 798 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~-~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 798 LSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRS-KTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhc-CCHhHHHHHHHHHHHHHH
Confidence 988877765431 1111333444444443 2455 56667 4567888888 7744 367899999999998864
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.93 E-value=7.5e-23 Score=271.53 Aligned_cols=574 Identities=13% Similarity=0.054 Sum_probs=388.5
Q ss_pred CCcHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhc
Q 000196 20 GGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELID 98 (1874)
Q Consensus 20 ~~~~~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~ 98 (1874)
+.+...+..+++.|++++...|. |++.|..++. .+.++ +..+++...+.+.+ +++...|..+..+++.+..
T Consensus 6 ~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~----~~~~~---~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~ 77 (588)
T 1b3u_A 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIAL----ALGVE---RTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTT 77 (588)
T ss_dssp TTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHH----HSCHH---HHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSG
T ss_pred CCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHH----HhCHH---HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHh
Confidence 34556789999999998765554 7777766652 33333 23345566666655 5677788888888888765
Q ss_pred cccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH-HHHHHHhhhcCCCcchhHHHHHHHH
Q 000196 99 VALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVEYRRFAAVLIL 177 (1874)
Q Consensus 99 ~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~~~r~aA~~~l 177 (1874)
..++. .....+.+.|..++. ..+..|+..|+++++.++..- ..+.+.. .++.+.+.. .+.++..|.+|+.++
T Consensus 78 ~~~~~--~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~---~~~~~~~~l~~~l~~l~-~~~~~~~R~~a~~~l 150 (588)
T 1b3u_A 78 LVGGP--EYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLVKRLA-GGDWFTSRTSACGLF 150 (588)
T ss_dssp GGTSG--GGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHHHHHH-TCSSHHHHHHHGGGH
T ss_pred ccCcH--HHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHH
Confidence 53221 123345556666654 468899999999999998752 2232222 333333322 345678899999999
Q ss_pred HHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000196 178 KEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 178 ~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 257 (1874)
+.++...+.. ..+.+++.+...+.|+++.||.+|+.+++.+...... ..+...+++.+...+.++ ++.+|
T Consensus 151 ~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~d~-~~~vr 220 (588)
T 1b3u_A 151 SVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL------DNVKSEIIPMFSNLASDE-QDSVR 220 (588)
T ss_dssp HHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH------HHHHHTHHHHHHHHHTCS-CHHHH
T ss_pred HHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH------HhHHHHHHHHHHHHhcCC-cHHHH
Confidence 9999887753 4677888888999999999999999999988765431 234566777777777666 47899
Q ss_pred HHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC-
Q 000196 258 HGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA- 336 (1874)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~- 336 (1874)
.+|+.+++.+....++. ...+.+.+.+....++++..||.+++.+++.++...+.. .+.+.+++.+...++++.
T Consensus 221 ~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~ 295 (588)
T 1b3u_A 221 LLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEA 295 (588)
T ss_dssp TTHHHHHHHHHHHSCHH--HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc---cchhHHHHHHHHHhCCCcH
Confidence 99999999998754421 223345566666678889999999999999998754332 245678888888887654
Q ss_pred -CcchHHHHHHHHHhhchhhhh--hhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCC
Q 000196 337 -ERDSGFIALGEMAGALDGELF--HYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGL 413 (1874)
Q Consensus 337 -~R~~a~~alg~la~~v~~~~~--p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~l 413 (1874)
.|..|..++|.++...|.... ++++.+++.+...+.+.+..++..++.+++.++..+|+.. ..+.
T Consensus 296 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~---------- 363 (588)
T 1b3u_A 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN--TIEH---------- 363 (588)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH--HHHH----------
T ss_pred HHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH--HHHH----------
Confidence 588999999999998886533 5677778777777755443334455555555555444311 0011
Q ss_pred CHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccc
Q 000196 414 STTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFN 493 (1874)
Q Consensus 414 s~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~ 493 (1874)
T Consensus 364 -------------------------------------------------------------------------------- 363 (588)
T 1b3u_A 364 -------------------------------------------------------------------------------- 363 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCC
Q 000196 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1874)
Q Consensus 494 f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1874)
+...+...+.+++++||.+|..+++.+..... .......+++.|.. ...|+
T Consensus 364 ---------l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~-------------------~~~~~~~~lp~l~~-~~~d~ 414 (588)
T 1b3u_A 364 ---------LLPLFLAQLKDECPEVRLNIISNLDCVNEVIG-------------------IRQLSQSLLPAIVE-LAEDA 414 (588)
T ss_dssp ---------THHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-------------------HHHHHHHHHHHHHH-HHTCS
T ss_pred ---------HHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC-------------------HHHHHHHHHHHHHH-HhcCC
Confidence 11122233445566777776666655543210 01123444554444 35778
Q ss_pred ChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhC
Q 000196 574 DVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQS 652 (1874)
Q Consensus 574 ~~~vR~~~l~~l~~-~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~ 652 (1874)
++.+|..++.++.. ...+.+....+.+++.++..++|++..||..|+..++.++...+... .+. .++..+..+..+
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~-~llp~l~~~~~~ 491 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHA-TIIPKVLAMSGD 491 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHH-HTHHHHHHTTTC
T ss_pred CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHH-HHHHHHHHHhhC
Confidence 88888888777641 00001111124578888999999999999999999999988654321 122 233334444444
Q ss_pred CCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHH
Q 000196 653 SADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMP 732 (1874)
Q Consensus 653 ~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp 732 (1874)
.+...|..++.+++.+++.++.. .|.+.+++.++..+.|+ ++.|+..++.+++.++...|..+. .+.++|
T Consensus 492 -~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~-----~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p 561 (588)
T 1b3u_A 492 -PNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-----VANVRFNVAKSLQKIGPILDNSTL--QSEVKP 561 (588)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-----CHHHHHHHHHHHHHHGGGSCHHHH--HHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC-----CchHHHHHHHHHHHHHHHhchhhh--HHHHHH
Confidence 67888999999999999887643 37788888898888875 789999999999999988776542 267888
Q ss_pred HHHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 733 LIVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 733 ~l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
.+...+.|. +.++|..|..+|+.+.
T Consensus 562 ~l~~l~~d~-d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 562 ILEKLTQDQ-DVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCS-SHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCC-chhHHHHHHHHHHHhh
Confidence 888866665 6899999999998763
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.91 E-value=1e-21 Score=260.62 Aligned_cols=563 Identities=14% Similarity=0.096 Sum_probs=384.7
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH
Q 000196 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1874)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~ 152 (1874)
.+.+.++++++..|..|+.++..+.... | .......+.++|.... ..+.+|+..+++++|.+...-|. .++++.
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~~-~-~~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~--~~~~~~ 87 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALAL-G-VERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGG--PEYVHC 87 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHS-C-HHHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTS--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHh-C-HHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCc--HHHHHH
Confidence 3455677899999999999998886532 2 1122334567777666 35789999999999988765221 123333
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchh
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETR 231 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~ 231 (1874)
.++.+...+ .+.+...|.+|+..|+.++...|. .+.+ .++|.+.....++++.+|.+|+.+++.+.....
T Consensus 88 ll~~L~~l~-~~~~~~vR~~a~~~L~~l~~~~~~~~~~~---~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~----- 158 (588)
T 1b3u_A 88 LLPPLESLA-TVEETVVRDKAVESLRAISHEHSPSDLEA---HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS----- 158 (588)
T ss_dssp GHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTSCHHHHHH---THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-----
T ss_pred HHHHHHHHH-hCchHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-----
Confidence 333333322 445667899999999999988775 2222 345555566678889999999998887654322
Q ss_pred hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000196 232 WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1874)
Q Consensus 232 ~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~ 311 (1874)
......+++.+...+.++ ++++|.+++.+++.+.+..+.. .+...+++.+....++.+..||..++.+++.++..
T Consensus 159 --~~~~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 159 --SAVKAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp --HHHHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 112345566555666665 4788999999999998754421 23455667777777888999999999999999876
Q ss_pred ChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHH
Q 000196 312 LRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNI 389 (1874)
Q Consensus 312 ~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l 389 (1874)
.+.. .+.+.++|.+...+.++. .|..|..++|.++..+|.+ .+.+.+++.+...+.+....++..+..+++.+
T Consensus 234 ~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~ 308 (588)
T 1b3u_A 234 LPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp SCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 6543 234667777777776543 5889999999999888764 24566777777777665444455677788887
Q ss_pred HHHhCCCch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcc
Q 000196 390 ARAMGPVME--PHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVM 467 (1874)
Q Consensus 390 ~~~~g~~~~--p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~ 467 (1874)
+..+|+... ++++.++|.
T Consensus 309 ~~~~~~~~~~~~~~~~l~p~------------------------------------------------------------ 328 (588)
T 1b3u_A 309 CENLSADCRENVIMSQILPC------------------------------------------------------------ 328 (588)
T ss_dssp HHTSCTTTHHHHHHHTHHHH------------------------------------------------------------
T ss_pred HHHhChhhhhhHHHHHHHHH------------------------------------------------------------
Confidence 777765432 222222221
Q ss_pred CCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccc
Q 000196 468 NIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRS 547 (1874)
Q Consensus 468 ~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~ 547 (1874)
+..++.++++.||.+|+.+++.+.....
T Consensus 329 ---------------------------------------l~~~l~d~~~~vR~~a~~~l~~l~~~~~------------- 356 (588)
T 1b3u_A 329 ---------------------------------------IKELVSDANQHVKSALASVIMGLSPILG------------- 356 (588)
T ss_dssp ---------------------------------------HHHHHTCSCHHHHHHHHTTGGGGHHHHC-------------
T ss_pred ---------------------------------------HHHHhcCCCHHHHHHHHHHHHHHHHHhh-------------
Confidence 1123445677888877776666543211
Q ss_pred cccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhc----cHhhHHHHHHHhCCCCHHHHHHHHHHH
Q 000196 548 NRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLA----QADCLSAIFAALNDEDFDVREYAISVA 623 (1874)
Q Consensus 548 ~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~----~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1874)
.......+++.++. .+.|++++||..++.+++. +...+. .+.+++.+...++|++..||..++..+
T Consensus 357 ------~~~~~~~l~p~l~~-~l~d~~~~Vr~~a~~~l~~---l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l 426 (588)
T 1b3u_A 357 ------KDNTIEHLLPLFLA-QLKDECPEVRLNIISNLDC---VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYM 426 (588)
T ss_dssp ------HHHHHHHTHHHHHH-HHTCSCHHHHHHHHTTCHH---HHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ------HhHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 01112334443333 4679999999999998852 211111 245678888889999999999999999
Q ss_pred HhhhcCCcCcc-chHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCCh
Q 000196 624 GRLSEKNPAYV-LPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702 (1874)
Q Consensus 624 ~~l~~~~p~~v-~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1874)
+.++...+..+ .+.+-+ .+..+..+ ++...|+.|+..++.+++..+.. .+.+.+++.+...+.+ .+.
T Consensus 427 ~~l~~~~~~~~~~~~l~~----~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~-----~~~ 494 (588)
T 1b3u_A 427 PLLAGQLGVEFFDEKLNS----LCMAWLVD-HVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGD-----PNY 494 (588)
T ss_dssp HHHHHHHCGGGCCHHHHH----HHHHGGGC-SSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTC-----SCH
T ss_pred HHHHHHcCHHHHHHHHHH----HHHHHhcC-CcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhC-----CCH
Confidence 99987655432 333332 33333334 56789999999999999886643 2456677777665554 378
Q ss_pred hHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHh
Q 000196 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKML 782 (1874)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l 782 (1874)
.++..++.+++.++...|.. .|.+.++|.+...+.|. +.++|..++++|+.++...|.... .+.+++.+..++
T Consensus 495 ~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~----~~~~~p~l~~l~ 567 (588)
T 1b3u_A 495 LHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPILDNSTL----QSEVKPILEKLT 567 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGSCHHHH----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHhchhhh----HHHHHHHHHHHc
Confidence 89999999999999877754 47889999999999886 578999999999999987765311 146777777754
Q ss_pred cCCCCHHHHHHHHHHHHHhc
Q 000196 783 NGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 783 ~~~~~~~vr~~al~~lg~lg 802 (1874)
++.++.+|..+..+++.+.
T Consensus 568 -~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 568 -QDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp -TCSSHHHHHHHHHHHHHTT
T ss_pred -CCCchhHHHHHHHHHHHhh
Confidence 4568999999999988764
No 11
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.77 E-value=4.3e-14 Score=196.85 Aligned_cols=671 Identities=10% Similarity=0.117 Sum_probs=389.4
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhh-cC--
Q 000196 110 KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAEN-AS-- 185 (1874)
Q Consensus 110 ~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~r~aA~~~l~~la~~-~p-- 185 (1874)
.+...|...+. .|.+++ |.+.|..+-.. ++|...++ +.+. ...+...|.+|...++..... ..
T Consensus 6 ~l~~~L~~~~s--pd~~~r--Ae~~L~~~~~~-----p~~~~~L~----~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 6 TVAKFLAESVI--ASTAKT--SERNLRQLETQ-----DGFGLTLL----HVIASTNLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHHHHHTTS--GGGHHH--HHHHHHHHHTS-----TTHHHHHH----HHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHHHhcC--CCHHHH--HHHHHHHhhcC-----CCHHHHHH----HHHhcCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 45566666553 356666 77788777443 33433333 3332 234456788888888876654 32
Q ss_pred ---ccch-hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHH
Q 000196 186 ---TVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSL 261 (1874)
Q Consensus 186 ---~~~~-~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al 261 (1874)
..+. ..-..|-..++.++.++...||...+.+++.++..-- + .+| +.+++.+.+.+.+++ ...++|++
T Consensus 73 ~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~---p---~~W-p~ll~~L~~~l~s~~-~~~~~~aL 144 (960)
T 1wa5_C 73 NGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDF---P---DRW-PTLLSDLASRLSNDD-MVTNKGVL 144 (960)
T ss_dssp SSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS---T---TTC-TTHHHHHHTTCCSSC-TTHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhC---c---cch-hHHHHHHHHHhCCCC-HHHHHHHH
Confidence 1232 2444566778888877779999999998887654311 1 234 567888888887664 56899999
Q ss_pred HHHHHHHHcch------h-------hhHHHHHHHHH---HHHHHhhcc--h-h------HHHHHHHHHhHhHhhhChhhH
Q 000196 262 LAVGELLRNTG------E-------FMMSRYREVAE---IVLRYLEHR--D-R------LVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 262 ~~l~~ll~~~~------~-------~~~~~~~~i~~---~ll~~~~~~--~-~------~vr~~~~~~i~~la~~~~~~f 316 (1874)
.++..+.+... + .+...+..+++ .+...++.. + . .++..++.++..+..+.-..+
T Consensus 145 ~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~ 224 (960)
T 1wa5_C 145 TVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEF 224 (960)
T ss_dssp HHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 99999987321 1 12222222222 222223322 1 1 222335555555544443445
Q ss_pred HHHHHHHHHHHHHHhhcCC--------CC---------cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCC-
Q 000196 317 VTNYLKICMNHILTVLRIP--------AE---------RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKP- 378 (1874)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~--------~~---------R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~- 378 (1874)
.+..++..++.+...|... ++ |..++.++..++...++.+.||++.+++.+.+.+.......
T Consensus 225 ~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~ 304 (960)
T 1wa5_C 225 FEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPK 304 (960)
T ss_dssp HHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 5556677778777776431 11 34678899999888888899999999988877774321111
Q ss_pred ----CchhHHHHHHHHHHhC--CCch--HHHHHHHH-HHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC
Q 000196 379 ----SLEALACVGNIARAMG--PVME--PHVRGLLD-IMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSK 449 (1874)
Q Consensus 379 ----~~~a~~~l~~l~~~~g--~~~~--p~l~~ll~-~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~ 449 (1874)
...++++|..+++.-. ..|. |++..++. .++ ..+.
T Consensus 305 ~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~-------------------------------~~m~----- 348 (960)
T 1wa5_C 305 YDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIIL-------------------------------PNVT----- 348 (960)
T ss_dssp SHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHH-------------------------------HHHS-----
T ss_pred cHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhH-------------------------------HhcC-----
Confidence 1246666665543110 1121 33333331 111 0110
Q ss_pred CCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHh
Q 000196 450 SHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKL 529 (1874)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l 529 (1874)
+. . +|.+ .|.+ .-.+|+++... +++...+|++|...+..+
T Consensus 349 --~~----------------~---~d~e---------------~w~~-dp~e~i~~d~e---~~d~~s~R~aa~~~L~~l 388 (960)
T 1wa5_C 349 --LR----------------E---EDVE---------------LFED-DPIEYIRRDLE---GSDTDTRRRACTDFLKEL 388 (960)
T ss_dssp --CC----------------G---GGTT---------------TTTT-CHHHHHHHHHH---C----CHHHHHHHHHHHH
T ss_pred --CC----------------H---HHHH---------------HHhc-CHHHHHHhccC---cccccCcHHHHHHHHHHH
Confidence 00 0 0000 0000 01234444322 233457888877666555
Q ss_pred hhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC
Q 000196 530 VANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN 609 (1874)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~ 609 (1874)
..... ..++..+++.+.. .+.... .-.
T Consensus 389 ~~~~~--------------------~~v~~~~l~~i~~-------------~l~~~~--------------------~~~ 415 (960)
T 1wa5_C 389 KEKNE--------------------VLVTNIFLAHMKG-------------FVDQYM--------------------SDP 415 (960)
T ss_dssp HHHCH--------------------HHHHHHHHHHHHH-------------HHHHHH--------------------C--
T ss_pred HHHcc--------------------hhHHHHHHHHHHH-------------HHHHhc--------------------cCc
Confidence 43110 0111111111100 011000 001
Q ss_pred CCCHHHHHHHHHHHHhhhcCC-----cC-------ccchHHHHHHHHHHHHHhhC-CCChHhHHHHHHHHHHHHHhCccc
Q 000196 610 DEDFDVREYAISVAGRLSEKN-----PA-------YVLPALRRHLIQLLTYLEQS-SADNKCREESAKLLGCLIRNCERL 676 (1874)
Q Consensus 610 D~~~~VR~~a~~~l~~l~~~~-----p~-------~v~p~l~~~l~~~l~~l~~~-~~~~~~r~~a~~~L~~l~~~~~~~ 676 (1874)
+++...|++|+.++|.++... |. .+.+.+.+.+ +..+... +..+..|..|++++|.+++..+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v---~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-- 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI---APDLTSNNIPHIILRVDAIKYIYTFRNQLT-- 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT---HHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh---HHHhcCCCCCCceehHHHHHHHHHHHhhCC--
Confidence 345778999999999997542 11 2223333322 3334322 0267889999999999987653
Q ss_pred cccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc-----------ccchhhcHHhHHHHHHHHHhcCc---
Q 000196 677 IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG-----------GFGMRQYISELMPLIVEALLDGA--- 742 (1874)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~-----------g~~~~~~~~~llp~l~~~l~d~~--- 742 (1874)
..++.++++.++..+.+. +..|+.+++.++..+++.. .+.+.||++++++.++..+....
T Consensus 491 -~~~l~~~l~~l~~~L~d~-----~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~ 564 (960)
T 1wa5_C 491 -KAQLIELMPILATFLQTD-----EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP 564 (960)
T ss_dssp -HHHHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH
T ss_pred -HHHHHHHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCC
Confidence 357888999999998864 6788999999999988742 35689999999999999987531
Q ss_pred -chhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhc----CCCCHHHHHHHHHHHHHhccc-CccchhhhcccC
Q 000196 743 -AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLN----GELVWSTRREVLKVLGIMGAL-DPHAHKRNQQLS 816 (1874)
Q Consensus 743 -~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~----~~~~~~vr~~al~~lg~lgal-dp~~~~~~~~~~ 816 (1874)
.....+.+..+++.++...+..+.||. +.+++.|.+.+. ++.++..+..++.++|.+... .|-
T Consensus 565 ~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~--------- 633 (960)
T 1wa5_C 565 EKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQ--------- 633 (960)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG---------
T ss_pred CcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc---------
Confidence 112446889999999999988889985 467777776663 344667777778888776521 110
Q ss_pred CCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCC
Q 000196 817 GSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPY 896 (1874)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~ 896 (1874)
.-.-|...+++.+..+|.... .+..+.+.+.+..+++.. ..+.||
T Consensus 634 ---------------------------------~~~~~~~~~~p~~~~iL~~~~-~~~~~~~~~i~~~l~~~~-~~~~~~ 678 (960)
T 1wa5_C 634 ---------------------------------NLPLLVDSMMPTFLTVFSEDI-QEFIPYVFQIIAFVVEQS-ATIPES 678 (960)
T ss_dssp ---------------------------------GHHHHHHHHHHHHHHHHHTTC-TTTHHHHHHHHHHHHHHC-SSCCTT
T ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHhhh-HhhHHHHHHHHHHHHHhc-cCCCHH
Confidence 001134567778888886432 356677888888888776 667889
Q ss_pred ccchhHHHH--HHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHH
Q 000196 897 LPKVLPDLF--HTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLC 974 (1874)
Q Consensus 897 l~~ilp~ll--~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~ 974 (1874)
+.+++|.++ ..++.. .....+...+..++....+.+.. ++.++..+........ . ....+.+++.++
T Consensus 679 ~~~~~~~l~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~-~-------~~~a~~ll~~i~ 747 (960)
T 1wa5_C 679 IKPLAQPLLAPNVWELK--GNIPAVTRLLKSFIKTDSSIFPD-LVPVLGIFQRLIASKA-Y-------EVHGFDLLEHIM 747 (960)
T ss_dssp TGGGHHHHTSGGGGCCT--TTHHHHHHHHHHHHHHHGGGCSC-SHHHHHHHHHHHTCTT-T-------HHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHhcCC--CCchhHHHHHHHHHHhChHHHHH-HHHHHHHHHHHhCCCc-c-------cchHHHHHHHHH
Confidence 999999887 544432 11122222222222221111111 1445555444443221 0 126889999999
Q ss_pred HHhhhh-hhccchhhHHHHHHhccc
Q 000196 975 LALNDE-FRTHLPVILPCCIQVLSD 998 (1874)
Q Consensus 975 ~~l~~~-f~~yl~~llp~ll~~l~~ 998 (1874)
..++.+ |.||++.+++.++..+..
T Consensus 748 ~~~~~~~~~~yl~~i~~~l~~~l~~ 772 (960)
T 1wa5_C 748 LLIDMNRLRPYIKQIAVLLLQRLQN 772 (960)
T ss_dssp HHSCHHHHGGGHHHHHHHHHHGGGS
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999988 999999999999999965
No 12
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.74 E-value=2.5e-14 Score=200.31 Aligned_cols=437 Identities=13% Similarity=0.104 Sum_probs=269.7
Q ss_pred HHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhh
Q 000196 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1874)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1874)
.-|..+..++..++...|..+++.+-+.+.+.+......+.+++.++.++.+++.+++.+.....++++.+++ +++.+.
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~ 514 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIP 514 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcC
Confidence 5788888999999988886666766666666655432222568899999999999999887777788888888 555555
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchH
Q 000196 694 EGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQ 773 (1874)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ 773 (1874)
.. +.++.|+..++.++|.++...+... .|++.++|.++..| | ..++..|..+|..+++.++..+.||. ++
T Consensus 515 ~~---d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~--~~ 584 (971)
T 2x1g_F 515 YE---KLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYA--DP 584 (971)
T ss_dssp TT---TSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHH--HH
T ss_pred cc---ccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccH--HH
Confidence 21 1378899999999999998766543 79999999999999 4 46899999999999999888788885 78
Q ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCcc
Q 000196 774 LLGLLLKMLNGEL-VWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSED 852 (1874)
Q Consensus 774 ll~~Ll~~l~~~~-~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 852 (1874)
+++.+..++.... +...+..++.++|.+...-|.... . + .-+
T Consensus 585 ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~-~-----------------------------------~-~~~ 627 (971)
T 2x1g_F 585 LLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI-P-----------------------------------K-YLD 627 (971)
T ss_dssp HHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH-H-----------------------------------H-HHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH-H-----------------------------------H-HHH
Confidence 9999999997642 578899999999886421111000 0 0 000
Q ss_pred chHHHHHHHHHHHccCCC----chhhHHHHHHHHHHHHHHhCC-------------CCCCCccchhHHHHHHHhcC--Cc
Q 000196 853 YYSTVAINSLMRILRDPS----LASYHQKVVGSLMFIFKSMGL-------------GCVPYLPKVLPDLFHTVRTC--DD 913 (1874)
Q Consensus 853 ~~~~~vi~~Ll~iL~d~s----~~~~~~~v~~al~~i~~~~~~-------------~~~~~l~~ilp~ll~~l~~~--~~ 913 (1874)
-+...++..+..+++.+. ........+..+..+++.++. .+.++.++++|.+...+... ++
T Consensus 628 ~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 707 (971)
T 2x1g_F 628 IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEI 707 (971)
T ss_dssp HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccH
Confidence 011233444444444332 111222455666677776653 34567889999999888754 44
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhh------hhccchh
Q 000196 914 YLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDE------FRTHLPV 987 (1874)
Q Consensus 914 ~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~------f~~yl~~ 987 (1874)
.+.+.++..++.++...+..+.||+|.+++.+...+.... ...++.+++.++..++.+ +...+..
T Consensus 708 ~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~---------~~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~ 778 (971)
T 2x1g_F 708 DVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRC---------CAPTLEISKTAIVMFFKDEGCKPLMQQLLRE 778 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--C---------CHHHHHHHHHHHTTCCC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCC---------chHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 6889999999999999999999999999999988877533 136788888888877764 4455555
Q ss_pred hHHHHHHhcccc---cccCchhhHHHHHHHHHHHhcchh------hh-hhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhc
Q 000196 988 ILPCCIQVLSDA---ERCNDYTYVLDILHTLEVFGGTLD------EH-MHLLLPALIRLFKVDAPVDIRRAAIETLTRLI 1057 (1874)
Q Consensus 988 llp~ll~~l~~~---~~~~~~~~~~~il~~l~~~g~~~~------~~-~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~ 1057 (1874)
++..+++.+... +.....+.....+..+..+...-. +. +..+++..+..+... .....++++..+..+.
T Consensus 779 ~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~-~~~~~~s~~~fl~~~i 857 (971)
T 2x1g_F 779 FIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLP-ESGAIRNSIQFLTHFV 857 (971)
T ss_dssp HHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSS-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence 555555555432 111112222223332222222111 33 444555555555432 2333456677776653
Q ss_pred cccc--------ccchhHhHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhccccccchh
Q 000196 1058 PRVQ--------VTGHISSLVHHLKLVLDGK-NDELRKDAVDALCCLAHALGEDFTIFIP 1108 (1874)
Q Consensus 1058 ~~~~--------~~~~~~~ii~~l~~~l~~~-~~~l~~~al~~L~~l~~~~g~~f~~~ip 1108 (1874)
.... +..+.+.++..++..+.+. .......+.++|..+....|..+..|+.
T Consensus 858 ~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~ 917 (971)
T 2x1g_F 858 MQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAMNRKYAAEMAVWMK 917 (971)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 3210 1223344444444433322 2344455566677777666655555554
No 13
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.69 E-value=1.8e-13 Score=191.90 Aligned_cols=401 Identities=15% Similarity=0.158 Sum_probs=261.9
Q ss_pred HHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhc
Q 000196 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLE 694 (1874)
Q Consensus 615 VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~ 694 (1874)
-|..+.+++..++...|..+.+.+.+.+.+.+.....+ .+++.++.++.+++.+++.+.....++++.+++.+. .+.+
T Consensus 423 ~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~ 500 (963)
T 2x19_B 423 YRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEP-YSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCS-CCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCC
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCC
Confidence 47778888888887766555555544444444222133 578899999999999999887777788888777443 3332
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHH
Q 000196 695 GTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1874)
Q Consensus 695 ~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~l 774 (1874)
.++.++..++.++|..+...+.. .+|++.+++.++..|.+ ..++..|+.+|..+++.++..+.||. +++
T Consensus 501 -----~~~~vr~~~~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~--~~i 569 (963)
T 2x19_B 501 -----SNVQLADTVMFTIGALSEWLADH-PVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYDLPPYA--ANI 569 (963)
T ss_dssp -----CSHHHHHHHHHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTH--HHH
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHhhH--HHH
Confidence 26779999999999998865533 37899999999999965 57899999999999998888888885 789
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccc
Q 000196 775 LGLLLKMLNGE-LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDY 853 (1874)
Q Consensus 775 l~~Ll~~l~~~-~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 853 (1874)
++.+..++... -+...+..++.++|.+..--| ... ...
T Consensus 570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~---------------------------------------~~~- 608 (963)
T 2x19_B 570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEE---------------------------------------ILK- 608 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHH---------------------------------------HHH-
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHH---------------------------------------HHH-
Confidence 99999988753 357889888999988642111 000 001
Q ss_pred hHHHHHHHHHH----HccCCCchh---hHHHHHHHHHHHHHHhCCC----------------------CCCCccchhHHH
Q 000196 854 YSTVAINSLMR----ILRDPSLAS---YHQKVVGSLMFIFKSMGLG----------------------CVPYLPKVLPDL 904 (1874)
Q Consensus 854 ~~~~vi~~Ll~----iL~d~s~~~---~~~~v~~al~~i~~~~~~~----------------------~~~~l~~ilp~l 904 (1874)
|...+++.+.. +.+.+...+ .....++++..+++.++.. +.++++.++|.+
T Consensus 609 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (963)
T 2x19_B 609 NLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLI 688 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHH
Confidence 11222222222 222221111 1224677788888887642 234678888888
Q ss_pred HHHHhcC--CcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHH--Hhhhh
Q 000196 905 FHTVRTC--DDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCL--ALNDE 980 (1874)
Q Consensus 905 l~~l~~~--~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~--~l~~~ 980 (1874)
+..+... ++.+.+.++..++.++..++.++.||+|++++.+........ ...++.+++.+.. ..++.
T Consensus 689 ~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---------~~~~l~l~~~li~~f~~~~~ 759 (963)
T 2x19_B 689 QKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP---------QASALDLTRQLVHIFAHEPA 759 (963)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC---------CHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC---------ccHHHHHHHHHHHHhCCCcc
Confidence 8877653 456788888999999988899999999999998876655322 1257888888877 44444
Q ss_pred hhccchhhHHHHH----HhcccccccCchhhHH---HHHHHHHHHh--cch-hhh-hhhhHHHHHHhhcCCCcHHHHHHH
Q 000196 981 FRTHLPVILPCCI----QVLSDAERCNDYTYVL---DILHTLEVFG--GTL-DEH-MHLLLPALIRLFKVDAPVDIRRAA 1049 (1874)
Q Consensus 981 f~~yl~~llp~ll----~~l~~~~~~~~~~~~~---~il~~l~~~g--~~~-~~~-~~~ilp~l~~~~~~~~~~~vr~~a 1049 (1874)
+.++++.++..++ ..+.+ +-........ .++..+.... ..+ .+. +..+++.++..+.. ....+.+.+
T Consensus 760 ~~~~~~~~l~~~~~~~l~~~~~-~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-~~~~~~~~~ 837 (963)
T 2x19_B 760 HFPPIEALFLLVTSVTLTLFQQ-GPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKF-PEAPTVKAS 837 (963)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH-CTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTC-SCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhh-CcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 5666655554444 34432 1111223333 3333333211 111 233 56667777777753 467788899
Q ss_pred HHHHHhhccccc--------ccchhHhHHHHHHHHhCCC
Q 000196 1050 IETLTRLIPRVQ--------VTGHISSLVHHLKLVLDGK 1080 (1874)
Q Consensus 1050 i~~l~~l~~~~~--------~~~~~~~ii~~l~~~l~~~ 1080 (1874)
+..+..+..... +..+...++..++.++.+.
T Consensus 838 l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 876 (963)
T 2x19_B 838 CGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQ 876 (963)
T ss_dssp HHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999998875421 3456677777777777643
No 14
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.69 E-value=3.8e-12 Score=177.29 Aligned_cols=736 Identities=10% Similarity=0.091 Sum_probs=412.1
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhccc-CCChHHHHHHHHHHHHHhhhC-C----
Q 000196 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEV-KRDREILVLASKVLGHLARAG-G---- 143 (1874)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~-~~d~~v~~~aa~~lg~l~~~~-g---- 143 (1874)
|.+.+.. ..+++.+.| |-..++.+-..+ .|..+|..++.. +.+.++|..|+-.|.+.+... .
T Consensus 7 l~~~L~~-~~spd~~~r--Ae~~L~~~~~~p---------~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~ 74 (960)
T 1wa5_C 7 VAKFLAE-SVIASTAKT--SERNLRQLETQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG 74 (960)
T ss_dssp HHHHHHH-TTSGGGHHH--HHHHHHHHHTST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred HHHHHHH-hcCCCHHHH--HHHHHHHhhcCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCccc
Confidence 4444444 345666666 555555552211 266677777632 346899999999999887642 1
Q ss_pred --CcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000196 144 --AMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1874)
Q Consensus 144 --~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~ 220 (1874)
....+-....=..+++.+..+. ...|..+..++..|+.. .| ..-+.+++.++..+.++++..+.++..++..
T Consensus 75 ~~~l~~~~k~~ik~~ll~~l~~~~-~~ir~~l~~~ia~ia~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~ 149 (960)
T 1wa5_C 75 NHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHS 149 (960)
T ss_dssp CBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 2344444444445666665443 56788888889999876 44 2447888999999988888899999999988
Q ss_pred HHHHHhh--cchhhH---HHHHHH-------HHHHHHhhccCCCC--hhHH------HHHHHHHHHHHH-cchhhhHHHH
Q 000196 221 CLRVIEK--RETRWR---VQWYYR-------MFEATQDGLGRNAP--VHSI------HGSLLAVGELLR-NTGEFMMSRY 279 (1874)
Q Consensus 221 ~~~~i~~--r~~~~~---~~~~~~-------i~~~~~~~l~~~~~--~~~~------~~al~~l~~ll~-~~~~~~~~~~ 279 (1874)
+++.... +....+ ...+.. ++..+...+.++.. ...+ +.++.++..+.. ..++++..++
T Consensus 150 i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~ 229 (960)
T 1wa5_C 150 IFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI 229 (960)
T ss_dssp HHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 7764321 111111 112222 22233334544321 1112 223333433322 2234555566
Q ss_pred HHHHHHHHHHhhcc---------------hhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC----CCC---
Q 000196 280 REVAEIVLRYLEHR---------------DRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI----PAE--- 337 (1874)
Q Consensus 280 ~~i~~~ll~~~~~~---------------~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~----~~~--- 337 (1874)
...++.++..+... ...+|+.++.++-.++...++.|. .|++.++..+...+.+ ...
T Consensus 230 ~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (960)
T 1wa5_C 230 QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFG-PMINEFIQITWNLLTSISNQPKYDIL 308 (960)
T ss_dssp HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHCCSCTTSHHH
T ss_pred HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCcCcHHH
Confidence 66666555544221 135788899999998877777774 5888888888887752 122
Q ss_pred cchHHHHHHHHHhhch--hhhh--hhhHHHH-HHHHHhhcCC-------CCC----------------CCchhHHHHHHH
Q 000196 338 RDSGFIALGEMAGALD--GELF--HYLPTIT-SHLREAIAPR-------RGK----------------PSLEALACVGNI 389 (1874)
Q Consensus 338 R~~a~~alg~la~~v~--~~~~--p~l~~i~-~~l~~~L~~~-------~~~----------------~~~~a~~~l~~l 389 (1874)
+..++.-+..++..-. ..+. +|++.++ ..+...+.-. ..+ ++..+..++..+
T Consensus 309 ~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l 388 (960)
T 1wa5_C 309 VSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKEL 388 (960)
T ss_dssp HHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHH
Confidence 3456666665543221 1233 7788777 4555554210 111 112344455555
Q ss_pred HHHhCCCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCC
Q 000196 390 ARAMGPVMEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNI 469 (1874)
Q Consensus 390 ~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 469 (1874)
+..+|+.+.|.+-..+..+++. . ...+
T Consensus 389 ~~~~~~~v~~~~l~~i~~~l~~----------------------------------~-~~~~------------------ 415 (960)
T 1wa5_C 389 KEKNEVLVTNIFLAHMKGFVDQ----------------------------------Y-MSDP------------------ 415 (960)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHH----------------------------------H-HC--------------------
T ss_pred HHHcchhHHHHHHHHHHHHHHH----------------------------------h-ccCc------------------
Confidence 5554432222111111111110 0 0000
Q ss_pred CccccccCCchhHHHHHHhhcccccC------CC-------cchhhHHHHHhhhccCC---ChHHHHHHHHHhHHhhhcc
Q 000196 470 PQQVSDLNGSAPVQLALQTLARFNFK------GH-------DLLEFARDSVVLYLDDE---DKATRKDAALCCCKLVANS 533 (1874)
Q Consensus 470 ~~~~~~~~~~~~~~~Al~~L~~~~f~------~~-------~l~~~v~~~~~~~l~~~---~~~VR~aAa~~~~~l~~~~ 533 (1874)
..+-..+..|+-++|.+.-. |. .+.+|+...+.+.+.++ ++-||.+|+.+++++..-.
T Consensus 416 ------~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~ 489 (960)
T 1wa5_C 416 ------SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL 489 (960)
T ss_dssp --------CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS
T ss_pred ------chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC
Confidence 00001122344433333100 10 34455556666766666 7888887776666543100
Q ss_pred CCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCH
Q 000196 534 FSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDF 613 (1874)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~ 613 (1874)
..+.+ ..+++.++.++.|++.
T Consensus 490 --------------------~~~~l---------------------------------------~~~l~~l~~~L~d~~~ 510 (960)
T 1wa5_C 490 --------------------TKAQL---------------------------------------IELMPILATFLQTDEY 510 (960)
T ss_dssp --------------------CHHHH---------------------------------------HHHHHHHHHHTTCSCH
T ss_pred --------------------CHHHH---------------------------------------HHHHHHHHHHhCCCCh
Confidence 00001 1345666677788888
Q ss_pred HHHHHHHHHHHhhhcC-----------CcCccchHHHHHHHHHHHHHhhCCC-C-h--HhHHHHHHHHHHHHHhCccccc
Q 000196 614 DVREYAISVAGRLSEK-----------NPAYVLPALRRHLIQLLTYLEQSSA-D-N--KCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 614 ~VR~~a~~~l~~l~~~-----------~p~~v~p~l~~~l~~~l~~l~~~~~-~-~--~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
.||..|..++.++++. .+..+.|++..++..++..+... + . . ...+.+..+|+.++...++.+.
T Consensus 511 ~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~-~~~~~~~~~~e~l~~al~~vv~~~~~~~~ 589 (960)
T 1wa5_C 511 VVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH-GSSPEKLAENEFLMRSIFRVLQTSEDSIQ 589 (960)
T ss_dssp HHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT-CCCHHHHTSCHHHHHHHHHHHHHHTTTTG
T ss_pred hHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHhhh
Confidence 9999999999998874 23457799988777776665542 1 0 1 1346788999999999999999
Q ss_pred cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcc-cchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g-~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
||++.+++.+...+........++.+...++.+++.++...+ +.+.++.+.++|.+...|+.. ..+....+...++.+
T Consensus 590 p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 590 PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFV 668 (960)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHH
Confidence 999999999988876531112356677778999999998744 578889999999999999743 345677788888888
Q ss_pred HhhccccccccccchHHHHHHH--HHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCC
Q 000196 758 VQSTGYVITPYNEYPQLLGLLL--KMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQP 835 (1874)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll--~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1874)
.... ..+.|| ++++++.+. ..++... .-..++++++. |..+..
T Consensus 669 ~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~---~~~~~~~~L~~------~~~~~~----------------------- 713 (960)
T 1wa5_C 669 VEQS-ATIPES--IKPLAQPLLAPNVWELKG---NIPAVTRLLKS------FIKTDS----------------------- 713 (960)
T ss_dssp HHHC-SSCCTT--TGGGHHHHTSGGGGCCTT---THHHHHHHHHH------HHHHHG-----------------------
T ss_pred HHhc-cCCCHH--HHHHHHHHcCHHHhcCCC---CchhHHHHHHH------HHHhCh-----------------------
Confidence 8766 334554 356777776 5554321 11223333322 110000
Q ss_pred ccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCC-CCCCccchhHHHHHHHhcCC-c
Q 000196 836 MDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLG-CVPYLPKVLPDLFHTVRTCD-D 913 (1874)
Q Consensus 836 ~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~-~~~~l~~ilp~ll~~l~~~~-~ 913 (1874)
+ .+. . ...++..+.+.+.+... ...++..+..|+..++.. +.||++.+++.++..+.... +
T Consensus 714 -~----~~~---~------~~~~l~~~~~~~~~~~~---~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~ 776 (960)
T 1wa5_C 714 -S----IFP---D------LVPVLGIFQRLIASKAY---EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776 (960)
T ss_dssp -G----GCS---C------SHHHHHHHHHHHTCTTT---HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCH
T ss_pred -H----HHH---H------HHHHHHHHHHHhCCCcc---cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcH
Confidence 0 000 0 12344445555555542 246888999999999888 89999999999999887663 3
Q ss_pred chhHHHHHHHHHHHHHHHHh-HHHhHH-----HHHHHHHHhhcCC--CCCcccccccchhHHHHHHHHHHH---hhhhhh
Q 000196 914 YLKDYITWKLGTLVSIVRQH-IRKYLQ-----ELFSLISELWSSF--SLPATNRTYRGLPVLHLVQQLCLA---LNDEFR 982 (1874)
Q Consensus 914 ~~~~~~~~~l~~lv~~~~~~-i~~y~~-----~i~~~i~~~~~~~--~~~~~~~~~~~~~~l~~i~~l~~~---l~~~f~ 982 (1874)
..+..++..++.++-..++. +.+.++ ..+.++...|-.. ..... ..+. .++..+..+... .+..+.
T Consensus 777 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~--~erk-~~~~gl~~ll~~~~~~~~~~~ 853 (960)
T 1wa5_C 777 RYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNL--LDRK-IALIGVLNMVINGQFFQSKYP 853 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSH--HHHH-HHHHHHHHHHHSCHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCH--HHHH-HHHHHHHHHHhcccccchhHH
Confidence 34323333344443222221 223332 1123333344211 00000 1122 233333333322 245566
Q ss_pred ccchhhHHHHHHhccc
Q 000196 983 THLPVILPCCIQVLSD 998 (1874)
Q Consensus 983 ~yl~~llp~ll~~l~~ 998 (1874)
+.++.++..+++++..
T Consensus 854 ~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 854 TLISSTMNSIIETASS 869 (960)
T ss_dssp GGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6777788877777754
No 15
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.67 E-value=4.1e-12 Score=177.89 Aligned_cols=792 Identities=9% Similarity=0.013 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhhccc
Q 000196 23 LDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELIDVA 100 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~li~~~ 100 (1874)
...+.++++.+-+++.+.++ |-..|..+ .-+++. +..+ ..++ ++.+...|..|...+...+...
T Consensus 6 ~~~l~~~l~~~~~~d~~~r~~A~~~L~~~------~~~p~~----w~~~----~~lL~~~~~~~vr~~aa~~L~~~i~~~ 71 (971)
T 2x1g_F 6 IARLEEAVVSFYRSNSQNQAITHEWLTDA------EASPQA----WQFS----WQLMQLGKSQEVQFFGAITLHSKLMKH 71 (971)
T ss_dssp -----CTHHHHHTSTTTC----CHHHHHT------TTSTHH----HHHH----HHHTCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHH------HcCHHH----HHHH----HHHHhcCCcHHHHHHHHHHHHHHHHcc
Confidence 34566777777676544443 42222221 122332 2212 2333 3567788988999998887653
Q ss_pred cCc----chhHHHH-HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhh-hcCCCcchhHHHHH
Q 000196 101 LGE----NASKVSK-FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDW-LRGDRVEYRRFAAV 174 (1874)
Q Consensus 101 ~~~----~~~~~~~-~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~-l~~~~~~~~r~aA~ 174 (1874)
-.. ....++. ..+++...- .+...++...+.++..++......|+++++.++..+-.- +..-.+...+..++
T Consensus 72 w~~l~~~~~~~ir~~ll~~l~~~~--~~~~~vr~kl~~~la~i~~~~~p~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l 149 (971)
T 2x1g_F 72 WHEVPPENREELKQKILESIVRFA--GGPKIVLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIML 149 (971)
T ss_dssp GGGCCGGGHHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHTTCC------HHHHHHHHTC----CHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHhccccccCCCHHHHHHHH
Confidence 221 2222332 233333332 225789999999999999873226887777666553210 00001345788999
Q ss_pred HHHHHHHhhc------------CccchhchHHHHHHHHHhhcCCc-h-------hHHHHHHHHHHHHHHH--Hhhcchhh
Q 000196 175 LILKEMAENA------------STVFNVHVAEFVDAIWVALRDPT-L-------AVRERAVEALRACLRV--IEKRETRW 232 (1874)
Q Consensus 175 ~~l~~la~~~------------p~~~~~~l~~il~~i~~~l~D~~-~-------~VR~aA~~al~~~~~~--i~~r~~~~ 232 (1874)
.+|+.+++.. ...+..+++.+++.+...+.+.. + .++.+|.++++.++.. +... .
T Consensus 150 ~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~ 226 (971)
T 2x1g_F 150 EVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---G 226 (971)
T ss_dssp HHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---G
T ss_pred HHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---c
Confidence 9999888631 13355677788777766665332 2 6889999988877662 3211 2
Q ss_pred HHHHHHHHHHHHHh-hc----------cCCCChhHHHHHHHHHHHHHHcch-hhhHHHHHHHHHHHHHH-------hhcc
Q 000196 233 RVQWYYRMFEATQD-GL----------GRNAPVHSIHGSLLAVGELLRNTG-EFMMSRYREVAEIVLRY-------LEHR 293 (1874)
Q Consensus 233 ~~~~~~~i~~~~~~-~l----------~~~~~~~~~~~al~~l~~ll~~~~-~~~~~~~~~i~~~ll~~-------~~~~ 293 (1874)
...++..++. +.. -+ ...++.+.+.+|+.++.+++.... +...+.+..+++.++.. ...+
T Consensus 227 ~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 305 (971)
T 2x1g_F 227 CVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKR 305 (971)
T ss_dssp HHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 3344554554 310 00 000124678899999999998422 11223334444433322 1233
Q ss_pred h---hHHHHHHHHHhHhHhhhChhhHH----------HHHHHHHHHHHHHhhcC----C-C--CcchHHHHHHHHHhhc-
Q 000196 294 D---RLVRLSITSLLPRIAHFLRDRFV----------TNYLKICMNHILTVLRI----P-A--ERDSGFIALGEMAGAL- 352 (1874)
Q Consensus 294 ~---~~vr~~~~~~i~~la~~~~~~f~----------~~yl~~~~~~Ll~~L~~----~-~--~R~~a~~alg~la~~v- 352 (1874)
+ +.+...++.++..++......|. ..++..+++.++..... . + .+..++.....++...
T Consensus 306 d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~ 385 (971)
T 2x1g_F 306 ENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVF 385 (971)
T ss_dssp SCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 4 26666777777777754443333 14667788888876643 2 2 2456776666666532
Q ss_pred -----------hhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCHHHHHHH
Q 000196 353 -----------DGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLSTTLVDAL 421 (1874)
Q Consensus 353 -----------~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~~l~~~l 421 (1874)
...+.|+++.+++.+...+.-.... . ... ..+.-.+-.... .....+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~---~-----------~~~-~d~~e~~~f~~~-----R~~~~~~l 445 (971)
T 2x1g_F 386 AMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEK---S-----------LAK-WSSDDLECFRCY-----RQDISDTF 445 (971)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHHHHTSCCCTT---T-----------TSC-SCHHHHHHHHHH-----HHHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcc---c-----------ccc-cCHhHHHHHHHH-----HHHHHHHH
Confidence 1124567777777766655211110 0 000 000000000000 00001111
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchh
Q 000196 422 EQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLE 501 (1874)
Q Consensus 422 ~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~ 501 (1874)
..++..++ ..+.+. +.+
T Consensus 446 ~~~~~~~~---~~~l~~------------------------------------------------------------~~~ 462 (971)
T 2x1g_F 446 MYCYDVLN---DYILEI------------------------------------------------------------LAA 462 (971)
T ss_dssp HHHHTTCT---THHHHH------------------------------------------------------------HHH
T ss_pred HHHHHHHh---HHHHHH------------------------------------------------------------HHH
Confidence 11111111 000000 112
Q ss_pred hHHHHHhhhcc-CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHh-cCCChhHHH
Q 000196 502 FARDSVVLYLD-DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV-ADADVTVRH 579 (1874)
Q Consensus 502 ~v~~~~~~~l~-~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~-~d~~~~vR~ 579 (1874)
++...+..+-. ..++..|.+|..+++.+....... ....+..+++ ++.... .|+++.||.
T Consensus 463 ~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~-----------------~~~~l~~l~~-~l~~l~~~d~~~~vr~ 524 (971)
T 2x1g_F 463 MLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGE-----------------EKRQIPRLMR-VLAEIPYEKLNVKLLG 524 (971)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------------------CHHHHHHH-HHHHSCTTTSCHHHHH
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChh-----------------hhHHHHHHHH-HHHhcCccccCHHHHH
Confidence 22222211111 246677877777766654211100 0123444444 222112 267899999
Q ss_pred HHHHhccCCCCcchhhc-----cHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCC
Q 000196 580 SIFSSLYGNRGFDDFLA-----QADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSA 654 (1874)
Q Consensus 580 ~~l~~l~~~~~f~~~L~-----~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~ 654 (1874)
+++..++ +|..++. -+.+++.++.++ | +.|+..|..++.++++.++..+.|++..++..++..+.....
T Consensus 525 ~a~~~l~---~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~ 598 (971)
T 2x1g_F 525 TALETMG---SYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRM 598 (971)
T ss_dssp HHHHHHH---HTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHH---HHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence 9999885 3333332 134677888888 4 789999999999999988888889988877666665654312
Q ss_pred ChHhHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCC-ChhHHHH---HHHHHHHHHHhcc---------
Q 000196 655 DNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINA-NNGIISG---VLVTVGDLARVGG--------- 720 (1874)
Q Consensus 655 ~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~-~~~v~~~---~~~~l~~La~~~g--------- 720 (1874)
+...+.....+++.++...+ +...||+..++..++..+..-..... +..-... .+.+++.+....+
T Consensus 599 ~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 678 (971)
T 2x1g_F 599 KNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATD 678 (971)
T ss_dssp CHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccc
Confidence 45778889999999998765 66778888888877776653210000 1212222 3334444333222
Q ss_pred ----cchhhcHHhHHHHHHHHHhcC-cchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHH
Q 000196 721 ----FGMRQYISELMPLIVEALLDG-AAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVL 795 (1874)
Q Consensus 721 ----~~~~~~~~~llp~l~~~l~d~-~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al 795 (1874)
+.+.++.++++|.+...+.+. .+..+.+.++..++.++...|..+.|| .|.+++.++..+++... ..++
T Consensus 679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~--l~~~~~~l~~~~~~~~~----~~~l 752 (971)
T 2x1g_F 679 QPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPM--LQDLCLFIVASFQTRCC----APTL 752 (971)
T ss_dssp -----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTH--HHHHHHHHHHHCC--CC----HHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhcccc--HHHHHHHHHHHHhcCCc----hHHH
Confidence 357888999999999988753 355788999999999999888888898 58999999988876433 2245
Q ss_pred HHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCC--Cchh
Q 000196 796 KVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDP--SLAS 873 (1874)
Q Consensus 796 ~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~--s~~~ 873 (1874)
.++|.+- .-+.. + ..+. +...+.+ ..++...+.+|... ....
T Consensus 753 ~l~~~~i--~~~~~------------------~-----~~~~----------~~l~~~~-~~~~~~~~~~l~~~~~~~~~ 796 (971)
T 2x1g_F 753 EISKTAI--VMFFK------------------D-----EGCK----------PLMQQLL-REFIQHSFKLFESTPEQNFS 796 (971)
T ss_dssp HHHHHHH--TTCCC--------------------------------------HHHHHHH-HHHHHHHHHHHTSCTTTHHH
T ss_pred HHHHHHH--HHhCC------------------C-----cchH----------HHHHHHH-HHHHHHHHHHHhcccccCCc
Confidence 5555431 10100 0 0000 0011122 22333445555543 1112
Q ss_pred hHHHHHHHHHHHHHH----hCCCC--CCC-ccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHH------HHhHHHhHHH
Q 000196 874 YHQKVVGSLMFIFKS----MGLGC--VPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIV------RQHIRKYLQE 940 (1874)
Q Consensus 874 ~~~~v~~al~~i~~~----~~~~~--~~~-l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~------~~~i~~y~~~ 940 (1874)
.++.+.++...++.. ....+ .|. ++.+++..+..+...++.....++..+..++..- .+.+.++.+.
T Consensus 797 ~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~ 876 (971)
T 2x1g_F 797 NISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQ 876 (971)
T ss_dssp HTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Confidence 234455555444433 22222 266 7888888888877655544445555555555442 2233444455
Q ss_pred HHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhh
Q 000196 941 LFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVI 988 (1874)
Q Consensus 941 i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~l 988 (1874)
++..+....... .|.+ .. ..+..++..+....++++++|+...
T Consensus 877 l~~~l~~~~~~~-~~~s---~~-~~~a~~l~~l~~~~~~~~~~~l~~~ 919 (971)
T 2x1g_F 877 TLYTAMMCVGYL-TPRS---QV-DKFADILLAMNRKYAAEMAVWMKSL 919 (971)
T ss_dssp HHHHHHHHHHTT-SCGG---GG-GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc-CChh---HH-HHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 555544433211 1111 11 1455666677766677777766543
No 16
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.66 E-value=9.2e-12 Score=174.57 Aligned_cols=749 Identities=11% Similarity=0.026 Sum_probs=420.3
Q ss_pred HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC-CCcchH
Q 000196 70 LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG-GAMTAD 148 (1874)
Q Consensus 70 l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~-g~~~~~ 148 (1874)
+.+.+..+..+++...|..|-..+..+-.-+ .+..++..++..+.+.+++-.|+.+|.+.+... .....+
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 4555555566678888887777777764332 133455556654568899999999999888753 334444
Q ss_pred HHHHHHHHHHhhhcCC--CcchhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHhhcC-----CchhHHHHHHHHHHH
Q 000196 149 EVEFQVKMALDWLRGD--RVEYRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRD-----PTLAVRERAVEALRA 220 (1874)
Q Consensus 149 ~v~~~~~~~~~~l~~~--~~~~~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D-----~~~~VR~aA~~al~~ 220 (1874)
-....=..+++++.+. .....|.....++..|+.. .|.. -+++++.+...++. +++..++.+...|..
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~ 172 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDA----WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTV 172 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTT----STTHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc----cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHh
Confidence 4444455556665431 2456777788888888876 3432 24667777777765 466788888888888
Q ss_pred HHHHHhhcch---------hhHHHHHHHHHHHHHhhccCCCCh-hHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh
Q 000196 221 CLRVIEKRET---------RWRVQWYYRMFEATQDGLGRNAPV-HSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL 290 (1874)
Q Consensus 221 ~~~~i~~r~~---------~~~~~~~~~i~~~~~~~l~~~~~~-~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~ 290 (1874)
+.+.+..+.. ..-..+.+.+++-+...+.+..+. .....++.++...+....... ....+++.++..+
T Consensus 173 l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~--~~~~ll~~l~~~l 250 (963)
T 2x19_B 173 LPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQ--DCEALIQAAFAAL 250 (963)
T ss_dssp HHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGG--GTHHHHHHHHHHT
T ss_pred CHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcc--cchHHHHHHHHHh
Confidence 7754422210 000123455655555555443221 356666666655444111111 1134556566555
Q ss_pred hcchhHHHHHHHHHhHhHhhhC-hhhHHHHHHHHHHHHHHHh-------hcCCCC--cchHHHHHHHHHhhchhhhh---
Q 000196 291 EHRDRLVRLSITSLLPRIAHFL-RDRFVTNYLKICMNHILTV-------LRIPAE--RDSGFIALGEMAGALDGELF--- 357 (1874)
Q Consensus 291 ~~~~~~vr~~~~~~i~~la~~~-~~~f~~~yl~~~~~~Ll~~-------L~~~~~--R~~a~~alg~la~~v~~~~~--- 357 (1874)
.++.+|.+++.++..+..-. +..+. ..+..+++.++.. +...+. .....+.+..++......+.
T Consensus 251 --~~~~~~~~a~~~l~~i~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~ 327 (963)
T 2x19_B 251 --QDSELFDSSVEAIVNAISQPDAQRYV-NTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQV 327 (963)
T ss_dssp --TSTTTHHHHHHHHHHHHTCTTGGGCH-HHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred --CCchHHHHHHHHHHHHHcccccccCH-HHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCc
Confidence 35778999999998887532 22222 2333444433322 222111 11223333333332222222
Q ss_pred ---hhhHHHHHHHHHhhcC-----CCCCCCchhHHHHHHHHHHhCC-----------CchHHHHHHHHHHHhcCCCHHHH
Q 000196 358 ---HYLPTITSHLREAIAP-----RRGKPSLEALACVGNIARAMGP-----------VMEPHVRGLLDIMFSAGLSTTLV 418 (1874)
Q Consensus 358 ---p~l~~i~~~l~~~L~~-----~~~~~~~~a~~~l~~l~~~~g~-----------~~~p~l~~ll~~ll~~~ls~~l~ 418 (1874)
+++..+++.+...... ...+....++.+|..+++.... .+.|++..+++.++..-.
T Consensus 328 ~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~----- 402 (963)
T 2x19_B 328 EHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQ----- 402 (963)
T ss_dssp GGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence 3455566666555543 1223345788899988874321 123333333333322100
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCc-hhHHHHHHhhccc-ccCC
Q 000196 419 DALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGS-APVQLALQTLARF-NFKG 496 (1874)
Q Consensus 419 ~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Al~~L~~~-~f~~ 496 (1874)
.|.- . + + . ... .++.++- +....+.++|..+ ...|
T Consensus 403 ---------~p~~--~--~--~---~-----------------------~~~--~de~~~~~~~r~~~~~~L~~~~~~~~ 439 (963)
T 2x19_B 403 ---------FPSD--E--E--Y---G-----------------------FWS--SDEKEQFRIYRVDISDTLMYVYEMLG 439 (963)
T ss_dssp ---------CCCH--H--H--H---H-----------------------TSC--HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---------CCCc--c--c--c---c-----------------------CCC--hhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000 0 0 0 0 000 0000000 0011122222222 0112
Q ss_pred CcchhhHHHHHhhhc----cCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcC
Q 000196 497 HDLLEFARDSVVLYL----DDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVAD 572 (1874)
Q Consensus 497 ~~l~~~v~~~~~~~l----~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d 572 (1874)
....+.+.+.+...+ ++.++..|.+|..+++.+...... . ..+.+..+++.+. .+.+
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~--------------~---~~~~l~~l~~~l~--~l~~ 500 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV--------------N---YSDVVPGLIGLIP--RISI 500 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS--------------S---CCSHHHHHHHHGG--GSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc--------------h---hhHHHHHHHHHHH--hCCC
Confidence 122233333333333 556788898887777776532110 0 1123445554332 3455
Q ss_pred CChhHHHHHHHhccCCCCcchhhc-c----HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHH
Q 000196 573 ADVTVRHSIFSSLYGNRGFDDFLA-Q----ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLT 647 (1874)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~f~~~L~-~----~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~ 647 (1874)
+++.||.+++..++ +|..++. . +.+++.++..++| +.|+..|..++.++++.++..+.|++..++..+..
T Consensus 501 ~~~~vr~~~~~~l~---~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 501 SNVQLADTVMFTIG---ALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQD 575 (963)
T ss_dssp CSHHHHHHHHHHHH---HTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH---HHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 78889999999885 4434332 1 3467888888877 78999999999999999888888999887666555
Q ss_pred HHhhCCCChHhHHHHHHHHHHHHHhCc-cccccchHHHHHHHHHHhhccCCCCCChhHH---HHHHHHHHHHHHhccc--
Q 000196 648 YLEQSSADNKCREESAKLLGCLIRNCE-RLIRPYIAPIHKALVARLLEGTGINANNGII---SGVLVTVGDLARVGGF-- 721 (1874)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~-~~~~py~~~il~~ll~~l~~~~~~~~~~~v~---~~~~~~l~~La~~~g~-- 721 (1874)
.+...+.+.+.+....++++.++...+ +.+.||+..+++.+...+..-.....++..+ ...+.+++.++...+.
T Consensus 576 ~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~ 655 (963)
T 2x19_B 576 VLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISH 655 (963)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSC
T ss_pred HhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 554421245778888999999998876 7888999999999988876411001133332 3556777777766542
Q ss_pred --------------------chhhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Q 000196 722 --------------------GMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLK 780 (1874)
Q Consensus 722 --------------------~~~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~ 780 (1874)
.+.++...++|.+...+.. ..+..+.+.+...++.++...|..+.|| .|.+++.++.
T Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~--l~~~~~~l~~ 733 (963)
T 2x19_B 656 HEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPM--VPQLCEMLGR 733 (963)
T ss_dssp CC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGG--HHHHHHHHHH
T ss_pred ccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccccc--HHHHHHHHHH
Confidence 2566888999998888753 3345788999999999999888877787 4788888877
Q ss_pred HhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHH
Q 000196 781 MLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAIN 860 (1874)
Q Consensus 781 ~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~ 860 (1874)
.......+ ..+.+++.+.. -|.. . + .+. +...+ +...++.
T Consensus 734 ~~~~~~~~----~~l~l~~~li~--~f~~--~----~-----------------~~~----------~~~~~-~l~~~~~ 773 (963)
T 2x19_B 734 MYSTIPQA----SALDLTRQLVH--IFAH--E----P-----------------AHF----------PPIEA-LFLLVTS 773 (963)
T ss_dssp HHHHSCCH----HHHHHHHHHHH--HHTT--C----T-----------------TTC----------HHHHH-HHHHHHH
T ss_pred HHHcCCcc----HHHHHHHHHHH--HhCC--C----c-----------------chH----------HHHHH-HHHHHHH
Confidence 66543222 34455544321 0000 0 0 000 00000 1134455
Q ss_pred HHHHHcc-CC-CchhhHHHHHHHHHHHHHHhCCCC--CCC-ccchhHHHHHHHhcCCcchhHHHHHHHHHHHHH------
Q 000196 861 SLMRILR-DP-SLASYHQKVVGSLMFIFKSMGLGC--VPY-LPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI------ 929 (1874)
Q Consensus 861 ~Ll~iL~-d~-s~~~~~~~v~~al~~i~~~~~~~~--~~~-l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~------ 929 (1874)
.++.++. +. +..++....+..+..+++.....+ .|. +..+++.++..++..+......++..+..++..
T Consensus 774 ~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~ 853 (963)
T 2x19_B 774 VTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVES 853 (963)
T ss_dssp HHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCH
T ss_pred HHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHH
Confidence 5555554 32 224555566777777777655443 255 888999999888876655566666666666643
Q ss_pred HHHhHHHhHHHHHHHHHHhhc
Q 000196 930 VRQHIRKYLQELFSLISELWS 950 (1874)
Q Consensus 930 ~~~~i~~y~~~i~~~i~~~~~ 950 (1874)
+.+.+.+|.+.++..+.....
T Consensus 854 ~~~~~~~~~~~l~~~l~~~l~ 874 (963)
T 2x19_B 854 VGKVVQEDGRMLLIAVLEAIG 874 (963)
T ss_dssp HHHHTTTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 233445677777766666554
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=4.1e-13 Score=171.70 Aligned_cols=428 Identities=13% Similarity=0.087 Sum_probs=276.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc---------
Q 000196 604 IFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--------- 674 (1874)
Q Consensus 604 L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--------- 674 (1874)
++..+.+++.++|..|-..|..+...++ |.+-..+.+.+ .+++.+...|..|+.+|..+++...
T Consensus 6 ~L~~~~s~d~~~r~~Ae~~L~~~~~~~~----~~~~~~L~~il---~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 6 ILEKTVSPDRLELEAAQKFLERAAVENL----PTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCh----HHHHHHHHHHH---HcCCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 3344556677778777777777554321 11222222222 2221345677777777777764320
Q ss_pred --ccccc-chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCc-chhhHHHH
Q 000196 675 --RLIRP-YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA-AVTKREVA 750 (1874)
Q Consensus 675 --~~~~p-y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~-~~~~r~~A 750 (1874)
..+.+ ....|-..+++.+.+. ++.+ ..+..+++.++...+.. ...++++|.+++.+++.. +...|+.|
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~-----~~~v-~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTE-----TYRP-SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCC-----CSSS-CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCC-----Cchh-hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 11111 1233555667777664 4456 67788899998875431 245889999999998753 57899999
Q ss_pred HHHHHHHHhhc-cccccccccchHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCC
Q 000196 751 VSTLGQVVQST-GYVITPYNEYPQLLGLLLKMLNGEL-VWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASD 828 (1874)
Q Consensus 751 ~~~Lg~l~~~~-~~~i~p~~~~p~ll~~Ll~~l~~~~-~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~ 828 (1874)
+.+|+.+++.. +..+.++ .+.+++.++..+++++ ++.+|.+++++++.+.. +... .
T Consensus 151 l~~l~~l~~~~~~~~~~~~--~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~---~~~~-~---------------- 208 (462)
T 1ibr_B 151 LEAIGYICQDIDPEQLQDK--SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE---FTKA-N---------------- 208 (462)
T ss_dssp HHHHHHHHHHSCGGGTGGG--HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT---TTHH-H----------------
T ss_pred HHHHHHHHHhCCchhhHhH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HHHH-h----------------
Confidence 99999999876 4434444 3679999999998764 78999999999987631 1100 0
Q ss_pred CCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCcc-chhHHHHHH
Q 000196 829 SGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYLP-KVLPDLFHT 907 (1874)
Q Consensus 829 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l~-~ilp~ll~~ 907 (1874)
. ....+...+++.|...+.+++. .....+++++..+....+..+.+|++ .+++.++..
T Consensus 209 ----------~----------~~~~~~~~l~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 209 ----------F----------DKESERHFIMQVVCEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (462)
T ss_dssp ----------H----------TSHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred ----------h----------hhhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000123355666666666543 55668899999999888777789999 999999998
Q ss_pred HhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchh
Q 000196 908 VRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPV 987 (1874)
Q Consensus 908 l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~ 987 (1874)
+++.++.++..++..++.++..... + .. ......... ++ .. .....-+++|++.
T Consensus 268 ~~~~~~~v~~~a~~~l~~~~~~~~~--------~----~~-~~~~~~~~~-~~----~~--------~~~~~~~~~~~~~ 321 (462)
T 1ibr_B 268 MKSDIDEVALQGIEFWSNVCDEEMD--------L----AI-EASEAAEQG-RP----PE--------HTSKFYAKGALQY 321 (462)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHH--------H----HH-HHCCTTCSS-SC----SS--------CCCCCHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHH--------H----HH-hcccccccC-CC----cc--------chhHHHHHHHhhh
Confidence 8887777887777766666543210 0 00 111000000 00 00 0111234568899
Q ss_pred hHHHHHHhcccccc---cCchhhHHHHHHHHHHHhcch-hhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccccc--
Q 000196 988 ILPCCIQVLSDAER---CNDYTYVLDILHTLEVFGGTL-DEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRVQ-- 1061 (1874)
Q Consensus 988 llp~ll~~l~~~~~---~~~~~~~~~il~~l~~~g~~~-~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~~-- 1061 (1874)
++|.+++.+.+.+. ..+......+..++..++..+ +..+..++|.+...+.. ....+|.+|+.++|.++.+.+
T Consensus 322 l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~ 400 (462)
T 1ibr_B 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPS 400 (462)
T ss_dssp HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCTT
T ss_pred ccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCcHH
Confidence 99999998864321 111222223334444433333 34556677777777754 478999999999999998643
Q ss_pred -ccchhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc--ccchhhHHHHHHh
Q 000196 1062 -VTGHISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF--TIFIPSIHKLLLK 1116 (1874)
Q Consensus 1062 -~~~~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f--~~~ip~i~~~l~~ 1116 (1874)
+.++++.+++.+++.+.++++.+|..|..+|+.++..+|..+ .+|++.+.+.+.+
T Consensus 401 ~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 401 QLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999998876 4788888887764
No 18
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.60 E-value=9.7e-14 Score=177.56 Aligned_cols=380 Identities=13% Similarity=0.094 Sum_probs=262.8
Q ss_pred HHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhcccc--
Q 000196 26 LNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELIDVAL-- 101 (1874)
Q Consensus 26 ~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~~-- 101 (1874)
+.+++.++.+++.+.++ |...|..+- .+....|+..+...+ .++ .+...|..|...+..++....
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~--------~~~~~~~~~~L~~il---~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAA--------VENLPTFLVELSRVL---ANPGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHH--------hhChHHHHHHHHHHH---HcCCCChHHHHHHHHHHHHhccccchH
Confidence 56788888888655555 544444432 112333444344322 222 367788889899998875420
Q ss_pred ----------CcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC--CCcchHHHHHHHHHHHhhhcCCC-cch
Q 000196 102 ----------GENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAG--GAMTADEVEFQVKMALDWLRGDR-VEY 168 (1874)
Q Consensus 102 ----------~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~--g~~~~~~v~~~~~~~~~~l~~~~-~~~ 168 (1874)
.-........-+.|...+. ..+..+ +.++.+++.++... ...++++++.++.. +.++. ++.
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~----l~~~~~~~~ 145 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVAN----VTNPNSTEH 145 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHH----HHCTTCCHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHH----hccCCCCHH
Confidence 0011111122334444453 345677 99999999999862 23677776665554 44432 668
Q ss_pred hHHHHHHHHHHHHhhc-CccchhchHHHHHHHHHhhcCC--chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000196 169 RRFAAVLILKEMAENA-STVFNVHVAEFVDAIWVALRDP--TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~~-p~~~~~~l~~il~~i~~~l~D~--~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~ 245 (1874)
.|.+|+.+++.+++.. |..+.++++.+++.+..++.|+ ++.||.+|+.+++.++..+....... .+...+++.+.
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~--~~~~~l~~~l~ 223 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKE--SERHFIMQVVC 223 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHH
Confidence 8999999999999976 7788999999999999999998 79999999999998765443211100 01122344444
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhC------------
Q 000196 246 DGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFL------------ 312 (1874)
Q Consensus 246 ~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~------------ 312 (1874)
..+.++ +.+++.+++.+++.+....++++.+++. .+++.++....+.++.||..++..+..++...
T Consensus 224 ~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~ 302 (462)
T 1ibr_B 224 EATQCP-DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (462)
T ss_dssp HHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred HhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445454 4788999999999999988888888888 89888888888899999999999999887642
Q ss_pred --------hhhHHHHHHHHHHHHHHHhhcCC---------CCcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCC
Q 000196 313 --------RDRFVTNYLKICMNHILTVLRIP---------AERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375 (1874)
Q Consensus 313 --------~~~f~~~yl~~~~~~Ll~~L~~~---------~~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~ 375 (1874)
...+++.|++.++|.++..+... ..|..|..+++.++...|+ ..++.+++.+.+.+.+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~ 379 (462)
T 1ibr_B 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPD 379 (462)
T ss_dssp SSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSS
T ss_pred cCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCC
Confidence 12356668899999999888542 2377999999999999985 456788888888886654
Q ss_pred CCCCchhHHHHHHHHHHhCC-CchHHHHHHHHHHHhc--CCCHHHH----HHHHHHHHhC
Q 000196 376 GKPSLEALACVGNIARAMGP-VMEPHVRGLLDIMFSA--GLSTTLV----DALEQITVSI 428 (1874)
Q Consensus 376 ~~~~~~a~~~l~~l~~~~g~-~~~p~l~~ll~~ll~~--~ls~~l~----~~l~~i~~~~ 428 (1874)
.+.+..++.++|.+++..++ .+.++++.++|.++.. .-++.++ .++..+++.+
T Consensus 380 ~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 380 WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 44456899999999986553 4677888888887764 2344443 3555555544
No 19
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.58 E-value=1.5e-11 Score=172.60 Aligned_cols=420 Identities=13% Similarity=0.167 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc-cccchHHHHHHHHHHh
Q 000196 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL-IRPYIAPIHKALVARL 692 (1874)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~il~~ll~~l 692 (1874)
..|..+-.+|..++...|..+.+.+.+.+.+.+ ..+..+++.++.++.++|.+++.+... -.++++.+++.++...
T Consensus 428 ~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l---~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~ 504 (1049)
T 3m1i_C 428 QLYKSEREVLVYLTHLNVIDTEEIMISKLARQI---DGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLT 504 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---TSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHH
Confidence 457777888888887776655555444443332 222257899999999999998766543 2355677777766532
Q ss_pred hccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccc-------
Q 000196 693 LEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI------- 765 (1874)
Q Consensus 693 ~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i------- 765 (1874)
......+..+.++..++.++|..+...... ..|++.+++.+++.|.+. +..++..|..+|..+++.++..+
T Consensus 505 ~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~~~~~l~~~~~~~ 582 (1049)
T 3m1i_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHET-HEGVQDMACDTFIKIVQKCKYHFVIQQPRE 582 (1049)
T ss_dssp TSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHHTHHHHSCCTTC
T ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 210000013445556788888877654332 468889999999998875 57899999999999999877543
Q ss_pred -cccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccC
Q 000196 766 -TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLW 844 (1874)
Q Consensus 766 -~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 844 (1874)
.||. ++++..+..++..- +..-....++++|.+....|....... -+. .+
T Consensus 583 ~~p~~--~~il~~l~~~~~~~-~~~~~~~~~eai~~ii~~~~~~~~~~~---------------------~~~----~l- 633 (1049)
T 3m1i_C 583 SEPFI--QTIIRDIQKTTADL-QPQQVHTFYKACGIIISEERSVAERNR---------------------LLS----DL- 633 (1049)
T ss_dssp SSCHH--HHHHHTHHHHHTTS-CHHHHHHHHHHHHHHHHTCCSHHHHHH---------------------HHH----HH-
T ss_pred CCcHH--HHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHcCCCHHHHHH---------------------HHH----HH-
Confidence 2664 68899888888653 344456677888876432221000000 000 00
Q ss_pred CCCCCCccchHHHHHHHHHHHc----cCCCc---hh---hHHHHHHHHHHHHHHhCCCCCCCccchhHHHHHHHhcCCcc
Q 000196 845 PSFATSEDYYSTVAINSLMRIL----RDPSL---AS---YHQKVVGSLMFIFKSMGLGCVPYLPKVLPDLFHTVRTCDDY 914 (1874)
Q Consensus 845 ~~~~~~~~~~~~~vi~~Ll~iL----~d~s~---~~---~~~~v~~al~~i~~~~~~~~~~~l~~ilp~ll~~l~~~~~~ 914 (1874)
...++..+-.++ .+++. .+ .-...++++..+++.+|..+.|+++.+++.++..++... .
T Consensus 634 ----------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~-~ 702 (1049)
T 3m1i_C 634 ----------MQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS-S 702 (1049)
T ss_dssp ----------THHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH-H
T ss_pred ----------HHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 011222222222 11111 01 112345677788888999888888888877765544321 0
Q ss_pred hhHHHHHHHHHHH--HHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhhccchhhHHHH
Q 000196 915 LKDYITWKLGTLV--SIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCC 992 (1874)
Q Consensus 915 ~~~~~~~~l~~lv--~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~l 992 (1874)
..+.....-|... .-....++...+.+..++..+.... .+++..+.||++.++..+
T Consensus 703 ~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~----------------------~~l~~~~~~~~~~~l~~l 760 (1049)
T 3m1i_C 703 MISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKA----------------------RNLDDVVKVLVEPLLNAV 760 (1049)
T ss_dssp HHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHC----------------------SCHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhC----------------------CCHHHHHHHHHHHHHHHH
Confidence 0000000000000 0000111222222322222221110 122334678888888888
Q ss_pred HHhcccccccCchhhHHHHHHHHH-HHhcchhhhhhhhHHHHHHh----hcC--CCcHHHHHHHHHHHHhhccc-c----
Q 000196 993 IQVLSDAERCNDYTYVLDILHTLE-VFGGTLDEHMHLLLPALIRL----FKV--DAPVDIRRAAIETLTRLIPR-V---- 1060 (1874)
Q Consensus 993 l~~l~~~~~~~~~~~~~~il~~l~-~~g~~~~~~~~~ilp~l~~~----~~~--~~~~~vr~~ai~~l~~l~~~-~---- 1060 (1874)
+..+.+.....+....+.++..+. .+|..+.+|+..+++.+... +.. +..+++|+..+..++.++.. .
T Consensus 761 l~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~ 840 (1049)
T 3m1i_C 761 LEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFL 840 (1049)
T ss_dssp HHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 887754211111123455555554 37877778887777766544 332 24688999999999998764 1
Q ss_pred cccc-hhHhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000196 1061 QVTG-HISSLVHHLKLVLDGKNDELRKDAVDALCCLAHALG 1100 (1874)
Q Consensus 1061 ~~~~-~~~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g 1100 (1874)
.+.+ ....+++..+..+..+++++.++++..+..++...+
T Consensus 841 ~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 841 ELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp HSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 1223 256778888888988889999999999999998865
No 20
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.49 E-value=2e-09 Score=151.16 Aligned_cols=590 Identities=10% Similarity=0.080 Sum_probs=318.6
Q ss_pred CCCcHHHHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhh
Q 000196 19 GGGSLDALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELI 97 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li 97 (1874)
..+....+.++++.+-+++.+.++ |-..|..+ .-+++.... +... +.++.+...|..|...+...+
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~------~~~p~~~~~----l~~i---L~~s~~~~vr~~aa~~Lk~~i 77 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKF------QDNPDAWQK----ADQI---LQFSTNPQSKFIALSILDKLI 77 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH------HHSTTGGGG----HHHH---HHHCSCHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhCCChHHHHHHHHHHHHH------HhCchHHHH----HHHH---HhhCCCHHHHHHHHHHHHHHH
Confidence 346677888888888887654444 43333322 122332221 2221 123567778888888888887
Q ss_pred ccccCc----chhHHHH-HHHHHHhhcccCC-----ChHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhhhcCCCc
Q 000196 98 DVALGE----NASKVSK-FSNYMRTVFEVKR-----DREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRV 166 (1874)
Q Consensus 98 ~~~~~~----~~~~~~~-~~~~L~~~l~~~~-----d~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~ 166 (1874)
...-.. ....++. ..+++...-+ .. +..++...+.++..++.. ....|+++++.++..+ + .+
T Consensus 78 ~~~W~~l~~~~~~~ir~~ll~~l~~~~~-~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~--~~ 150 (1049)
T 3m1i_C 78 TRKWKLLPNDHRIGIRNFVVGMIISMCQ-DDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S--SS 150 (1049)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHHHHHHHH-CHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T--TC
T ss_pred HhhCccCCHHHHHHHHHHHHHHHHhhCC-ccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c--cC
Confidence 543111 1222332 2333333221 11 367899999999999987 3457888877776654 2 23
Q ss_pred chhHHHHHHHHHHHHhhcC----------------ccchhchHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHHhhcc
Q 000196 167 EYRRFAAVLILKEMAENAS----------------TVFNVHVAEFVDAIWVALRDP-TLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 167 ~~~r~aA~~~l~~la~~~p----------------~~~~~~l~~il~~i~~~l~D~-~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
...+..++.+|+.+++-.. ..|..+++.+++.+...+.+. ++.+|.+|.+++..++..+....
T Consensus 151 ~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~ 230 (1049)
T 3m1i_C 151 VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY 230 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH
Confidence 3457788888888886432 335677888888888888654 57899999999988876543111
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc-hhh---hHHHHHHHHHHHHHHh---------------
Q 000196 230 TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT-GEF---MMSRYREVAEIVLRYL--------------- 290 (1874)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~-~~~---~~~~~~~i~~~ll~~~--------------- 290 (1874)
.....++..+++.+.. +.+.+.+|+.++.+++... ++. ....+..++..++..+
T Consensus 231 -~~~~~ll~~l~~~~l~------~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~ 303 (1049)
T 3m1i_C 231 -IYETNILELLSTKFMT------SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATY 303 (1049)
T ss_dssp -HHSSSHHHHHHTHHHH------SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred -HhhhhHHHHHHHHhCC------CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHh
Confidence 0112344444433322 2577889999999988742 221 2223333333333211
Q ss_pred ---hcchhHHHHHHHHHhHhHhhhCh------hhHHHHHHHHHHHHHHHhhcCCCC--cchHHHHHHHHHhhc------h
Q 000196 291 ---EHRDRLVRLSITSLLPRIAHFLR------DRFVTNYLKICMNHILTVLRIPAE--RDSGFIALGEMAGAL------D 353 (1874)
Q Consensus 291 ---~~~~~~vr~~~~~~i~~la~~~~------~~f~~~yl~~~~~~Ll~~L~~~~~--R~~a~~alg~la~~v------~ 353 (1874)
++.+..+.+.++.++..+...-. ..+ ..++..++++++.+...+++ +..++.-...++... .
T Consensus 304 ~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~ 382 (1049)
T 3m1i_C 304 ANANGNDQSFLQDLAMFLTTYLARNRALLESDESL-RELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKK 382 (1049)
T ss_dssp HHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCG
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhh-HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 12234444555555544432111 112 23567788888877655421 345555555555522 1
Q ss_pred hhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHH--HHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 000196 354 GELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRG--LLDIMFSAGLSTTLVDALEQITVSIPSL 431 (1874)
Q Consensus 354 ~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~--ll~~ll~~~ls~~l~~~l~~i~~~~p~l 431 (1874)
..+.++++.+++.+...+.-.. +... +. ..-|+.|.++.++ -. .. ...+.+++..++...|
T Consensus 383 ~~~~~~l~~Lv~~ll~~m~~~e-d~~~--~~------dd~~e~~r~~~~d~d~~-~~-----~~~~~~~L~~l~~~~~-- 445 (1049)
T 3m1i_C 383 HIYEEICSQLRLVIIENMVRPE-EVLV--VE------NDEGEIVREFVKESDTI-QL-----YKSEREVLVYLTHLNV-- 445 (1049)
T ss_dssp GGGHHHHHHHHHHHHHTCCCCT-TCCE--EE------CTTSCEEECSSCCHHHH-HH-----HHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-ceee--ee------CCCCcchHhhhccchHH-HH-----HHHHHHHHHHHHccCH--
Confidence 2345677777777666553211 1000 00 0011222111100 00 00 0001122222211100
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhc
Q 000196 432 LPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYL 511 (1874)
Q Consensus 432 ~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l 511 (1874)
....+++.+.+..++
T Consensus 446 -----------------------------------------------------------------~~~l~~v~~~l~~~l 460 (1049)
T 3m1i_C 446 -----------------------------------------------------------------IDTEEIMISKLARQI 460 (1049)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHh
Confidence 000111112222222
Q ss_pred c--CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHh----cCCChhHHHHHHHhc
Q 000196 512 D--DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAV----ADADVTVRHSIFSSL 585 (1874)
Q Consensus 512 ~--~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~----~d~~~~vR~~~l~~l 585 (1874)
. +.++..|.+|..+++.+...... ......+..+++.|+...- .|+.+.||..++..+
T Consensus 461 ~~~~~~W~~~eaal~algsia~~~~~----------------~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l 524 (1049)
T 3m1i_C 461 DGSEWSWHNINTLSWAIGSISGTMSE----------------DTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVV 524 (1049)
T ss_dssp TSSSCCHHHHHHHHHHHHHTTTSSCH----------------HHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccCc----------------hhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence 2 23556666666665544321000 0011234555555443211 135566665666666
Q ss_pred cCCCCcchhhc-c----HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccc--------hHHHHHHHHHHHHHhhC
Q 000196 586 YGNRGFDDFLA-Q----ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVL--------PALRRHLIQLLTYLEQS 652 (1874)
Q Consensus 586 ~~~~~f~~~L~-~----~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~--------p~l~~~l~~~l~~l~~~ 652 (1874)
+ +|..++. + +.+++.++..++|+++.||..|..++.++++.++..+. |++..++..+...+..
T Consensus 525 g---ry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~- 600 (1049)
T 3m1i_C 525 G---QYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD- 600 (1049)
T ss_dssp H---HCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-
T ss_pred H---HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh-
Confidence 4 3333321 1 34567777889999999999999999999998775543 8888766555544433
Q ss_pred CCChHhHHHHHHHHHHHHHhCc--cccccchHHHHHHHHHHhhccC-----CCC--CChh---HHHHHHHHHHHHHHhcc
Q 000196 653 SADNKCREESAKLLGCLIRNCE--RLIRPYIAPIHKALVARLLEGT-----GIN--ANNG---IISGVLVTVGDLARVGG 720 (1874)
Q Consensus 653 ~~~~~~r~~a~~~L~~l~~~~~--~~~~py~~~il~~ll~~l~~~~-----~~~--~~~~---v~~~~~~~l~~La~~~g 720 (1874)
-+.+......++++.++...+ +...+|+..+++.++..+.... ..+ .++. .....+.+++.++...|
T Consensus 601 -~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~ 679 (1049)
T 3m1i_C 601 -LQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG 679 (1049)
T ss_dssp -SCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred -CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556677889999998876 3577888888887766543210 000 0111 12355678888889999
Q ss_pred cchhhcHHhHHHHHHHHHh
Q 000196 721 FGMRQYISELMPLIVEALL 739 (1874)
Q Consensus 721 ~~~~~~~~~llp~l~~~l~ 739 (1874)
..+.|+++.+++.++..++
T Consensus 680 ~~f~p~~~~i~~~~l~~~~ 698 (1049)
T 3m1i_C 680 ADFYPQLGHIYYNMLQLYR 698 (1049)
T ss_dssp GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999888877665554
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.43 E-value=4.4e-09 Score=137.44 Aligned_cols=673 Identities=11% Similarity=0.063 Sum_probs=362.1
Q ss_pred HHHHHHHHHHHcCCC--Cchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhc
Q 000196 23 LDALNRILADLCTHG--NPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES-NDAAENLGALRAIDELID 98 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~--~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~ 98 (1874)
+.-+++.|+=+.+.. .+++ +|+.-|-- .+||-.+-. .-|-+.-+.++.+++++ ++.+...+|+..+..+..
T Consensus 5 ~~kv~~m~~i~~~~~~~~~~~~~a~~nl~v----l~re~aga~-~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 79 (810)
T 3now_A 5 STKVKQMMDLTFDLATPIDKRRAAANNLVV----LAKEQTGAE-LLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCE 79 (810)
T ss_dssp HHHHHHHHHHHHSSCCSSHHHHHHHHHHHH----HSSCHHHHH-HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcccccCHHHHHHHHhhcee----eeccccchH-HHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 456777888776543 2333 47554433 345532221 11223345677888876 788899999999999987
Q ss_pred cccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHHHHHhhh--CCCcc------h-------HHHHHHHHHHHhhhc
Q 000196 99 VALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVLGHLARA--GGAMT------A-------DEVEFQVKMALDWLR 162 (1874)
Q Consensus 99 ~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~--~g~~~------~-------~~v~~~~~~~~~~l~ 162 (1874)
.........+..+ .+++..++. +.+.++...++.++..+..+ |+... . .-+...+..+++-+.
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 158 (810)
T 3now_A 80 NSVERTKGVLTELGVPWFMRVLD-QKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSIT 158 (810)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHH-CCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhh
Confidence 6311111111111 246666664 56888889999888877653 32221 1 123344555555554
Q ss_pred CCCc-chhHHHHHHHHHHHHhhcCccchh----ch-HHHHHHHHHh---hcCC--------chhHHHHHHHHHHHHHHHH
Q 000196 163 GDRV-EYRRFAAVLILKEMAENASTVFNV----HV-AEFVDAIWVA---LRDP--------TLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 163 ~~~~-~~~r~aA~~~l~~la~~~p~~~~~----~l-~~il~~i~~~---l~D~--------~~~VR~aA~~al~~~~~~i 225 (1874)
+.+- ...|-+++.+ +..+.|..-.. ++ ..=+..++.. +-+. .+..|..|.-++..+.+.+
T Consensus 159 ~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~ 235 (810)
T 3now_A 159 DRTISGAARDGVIEL---ITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENM 235 (810)
T ss_dssp CTTSCHHHHHHHHHH---HHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTC
T ss_pred ccccChhhHHHHHHH---HHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHh
Confidence 4332 3556666655 45555542110 10 0011222221 2232 4678999998888877654
Q ss_pred hhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHHH
Q 000196 226 EKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSITS 303 (1874)
Q Consensus 226 ~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~vr~~~~~ 303 (1874)
. ....+..+...+-+-+...+..++ .+..-.|.-++..++.+..+.-..-+ +..++.++.++.+.++.+++.+++
T Consensus 236 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~ 312 (810)
T 3now_A 236 Y--YDEAKARFTDQIDEYIKDKLLAPD-MESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACE 312 (810)
T ss_dssp C--SHHHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred c--cchhHHHHHHHHHHHHHHHhccCC-hHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHH
Confidence 4 112233333333333444454443 45556667778777775554333322 246778888889999999999999
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh--hhhh----hHHHHHHHHHhhcCC-
Q 000196 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE--LFHY----LPTITSHLREAIAPR- 374 (1874)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~--~~p~----l~~i~~~l~~~L~~~- 374 (1874)
+++.+|.- + ...+.....-++.|...+++.. .|..|..+|..++...+.+ ..++ +..+++.++..|...
T Consensus 313 al~~aa~~-~-~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~ 390 (810)
T 3now_A 313 CLIAASSK-K-DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPG 390 (810)
T ss_dssp HHHHHTTS-H-HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCC-c-HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCC
Confidence 99997653 2 2222122223488888887543 3667888888887543311 1122 456778888888655
Q ss_pred -CCCCCchhHHHHHHHHHHhCCCchHH-H--HHHHHHHHhcCCCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Q 000196 375 -RGKPSLEALACVGNIARAMGPVMEPH-V--RGLLDIMFSAGLSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKS 450 (1874)
Q Consensus 375 -~~~~~~~a~~~l~~l~~~~g~~~~p~-l--~~ll~~ll~~~ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~ 450 (1874)
+.+....+..+++.++. ++..... + ..++|.|+.. +. . + .+.++.+.+..+..+..+.
T Consensus 391 ~d~~v~~~AveaLayLS~--~~~vk~~lv~d~g~Ip~LV~L---------L~----s-~--d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 391 KDKDIRRWAADGLAYLTL--DAECKEKLIEDKASIHALMDL---------AR----G-G--NQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp CCSSHHHHHHHHHHHHTT--SHHHHHHHHHCHHHHHHHHHH---------HH----T-T--CGGGHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHHHHHHHhC--CcHHHHHHHHccchHHHHHHH---------hC----C-C--ChHHHHHHHHHHHHHcCCc
Confidence 33344567888877754 2222211 1 1344444321 11 0 0 1244455555555544332
Q ss_pred CCCCCCCCCCCCCCCc--cCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHH
Q 000196 451 HYSQARPAATPIRGNV--MNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCK 528 (1874)
Q Consensus 451 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~ 528 (1874)
.-. .+.+....-... ...+. ....++.+....=++.+..- | +-..+..++.++++.+|..|+.+++.
T Consensus 453 d~q-~~~~~l~~la~~s~~~v~~-~~~ld~~~~v~~r~~~Vvea---G------aVp~LV~LL~s~s~~vqe~Aa~aL~N 521 (810)
T 3now_A 453 EKQ-EMLPEMIELAKFAKQHIPE-EHELDDVDFINKRITVLANE---G------ITTALCALAKTESHNSQELIARVLNA 521 (810)
T ss_dssp CCC-CCCCSCGGGTTTTCCSCCC-SSCHHHHHHHHHHHHHHHHT---T------HHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred hhh-hhhHHHHHHHHHhhccCcc-ccccccHHHHHHHHHHHHHC---c------CHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 110 000000000000 00000 00000000000000000000 1 00122344555566666666655555
Q ss_pred hhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHh
Q 000196 529 LVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAAL 608 (1874)
Q Consensus 529 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l 608 (1874)
+... .+.|..++ +...++.|+..+
T Consensus 522 LA~d------------------------------------------~~~r~~Vv--------------~~Gaip~Lv~LL 545 (810)
T 3now_A 522 VCGL------------------------------------------KELRGKVV--------------QEGGVKALLRMA 545 (810)
T ss_dssp HHTS------------------------------------------HHHHHHHH--------------HTTHHHHHHHHH
T ss_pred HcCC------------------------------------------HHHHHHHH--------------HCCCHHHHHHHH
Confidence 4310 00111111 123567777778
Q ss_pred CCCCHHHHHHHHHHHHhhhcC-CcCccch--HHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchH-HH
Q 000196 609 NDEDFDVREYAISVAGRLSEK-NPAYVLP--ALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA-PI 684 (1874)
Q Consensus 609 ~D~~~~VR~~a~~~l~~l~~~-~p~~v~p--~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~-~i 684 (1874)
.+.++.+|+.|..+|++++.. +|..+.+ .....+..++.-+..+ .+...+..|+++|..++....+.....+. ..
T Consensus 546 ~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~ 624 (810)
T 3now_A 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD-CTALENFESLMALTNLASMNESVRQRIIKEQG 624 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 788889999999999998764 5543322 1123344444433332 34445568999999998764322111111 34
Q ss_pred HHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc
Q 000196 685 HKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 685 l~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~ 762 (1874)
++.|+..+.+. ++.++..++.+|+.|+.. .+....++ ...+|.++..+... +...|..|+++|+.++.+..
T Consensus 625 l~~Lv~LL~s~-----~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~ 697 (810)
T 3now_A 625 VSKIEYYLMED-----HLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSV 697 (810)
T ss_dssp HHHHHHHHHSC-----CTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCC-----CHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCH
Confidence 56666666654 678999999999998752 22334444 25788888888754 67899999999999987533
Q ss_pred ccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 763 YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 763 ~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
..+.........++.|+.+|+++ +.+++..++.+++.+..
T Consensus 698 ~~~~~ii~~~g~I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 698 KCCEKILAIASWLDILHTLIANP-SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHTSTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHCCC-CHHHHHHHHHHHHHHHh
Confidence 22111111135788888888765 78999999999988754
No 22
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.42 E-value=3.1e-09 Score=145.28 Aligned_cols=435 Identities=12% Similarity=0.096 Sum_probs=247.7
Q ss_pred HHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHh---hCCCChHhHHHHHHHHHHHHHhCccc------cccchHHHH
Q 000196 615 VREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLE---QSSADNKCREESAKLLGCLIRNCERL------IRPYIAPIH 685 (1874)
Q Consensus 615 VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~---~~~~~~~~r~~a~~~L~~l~~~~~~~------~~py~~~il 685 (1874)
.|.....++..++...|..+++++-..+...+.... .+ .+++.+|.++.+|+.+++.+... ..++++.++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~-~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPE-NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCC-CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 455444455555555666666633333444443321 12 35888999999999999987542 225666677
Q ss_pred HHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHH--HHhcCcchhhHHHHHHHHHHHHhhccc
Q 000196 686 KALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVE--ALLDGAAVTKREVAVSTLGQVVQSTGY 763 (1874)
Q Consensus 686 ~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~--~l~d~~~~~~r~~A~~~Lg~l~~~~~~ 763 (1874)
+.+...+..+.....++.|+..++.++|..+...... ..|++.+++.+++ .+.+. +..+|..|..+|..+++.++.
T Consensus 493 ~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~-~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 493 QILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE-SAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC-CTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhH
Confidence 6666665532212347889999999999888765432 3577777887777 66654 467999999999999999998
Q ss_pred cccccccchHHHHHHHHHhcCC----CCH----------------HHHHHHHHHHHHhc-ccC-ccchhhhcccCCCccc
Q 000196 764 VITPYNEYPQLLGLLLKMLNGE----LVW----------------STRREVLKVLGIMG-ALD-PHAHKRNQQLSGSHGE 821 (1874)
Q Consensus 764 ~i~p~~~~p~ll~~Ll~~l~~~----~~~----------------~vr~~al~~lg~lg-ald-p~~~~~~~~~~~~~~~ 821 (1874)
.+.||. +.++..+..+|... ... +-+...+.++|.+- +.. |.-.+ .
T Consensus 571 ~L~~~~--~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~-~--------- 638 (980)
T 3ibv_A 571 QVVNYT--ESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQ-A--------- 638 (980)
T ss_dssp TCSSSH--HHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHH-H---------
T ss_pred HhhhHH--HHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHH-H---------
Confidence 888875 57888887777521 111 12333555666542 211 11000 0
Q ss_pred ccccCCCCCCCCCCccccccccCCCCCCCccchHHHH----HHHHHHHccCCCch-----hhHHHHHHHHHHHHHHhCCC
Q 000196 822 VTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVA----INSLMRILRDPSLA-----SYHQKVVGSLMFIFKSMGLG 892 (1874)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v----i~~Ll~iL~d~s~~-----~~~~~v~~al~~i~~~~~~~ 892 (1874)
.|...+ +..+-..+...... ..| ..+.|+..+.+.....
T Consensus 639 -------------------------------~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~-~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 639 -------------------------------LYCDSLINALIGKANAALSSDLSALENIISVY-CSLMAIGNFAKGFPAR 686 (980)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHTTSCC--CHHHHHH-HHHHHHHHHHHTSCSC
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHhhcccCccHHHHHH-HHHHHHHHHhccCCcc
Confidence 011111 12222223211111 122 3466667776654322
Q ss_pred ------CCCCccchhHHHHHHHhc--CCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccch
Q 000196 893 ------CVPYLPKVLPDLFHTVRT--CDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGL 964 (1874)
Q Consensus 893 ------~~~~l~~ilp~ll~~l~~--~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~ 964 (1874)
+...+.++++.++..+.. .+..+|+.+...+..++..+|..+.||+|+++..+........ ..
T Consensus 687 ~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e---------~~ 757 (980)
T 3ibv_A 687 GSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE---------LV 757 (980)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT---------HH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH---------HH
Confidence 122345677777777764 3456899999999999999999999999999999886554332 12
Q ss_pred hHHHHHHHHHHHhhhhhhccchhhHHHHHHh----cccccccCc--hh---hHH---HHHHHHHH--Hhcch-h----hh
Q 000196 965 PVLHLVQQLCLALNDEFRTHLPVILPCCIQV----LSDAERCND--YT---YVL---DILHTLEV--FGGTL-D----EH 1025 (1874)
Q Consensus 965 ~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~----l~~~~~~~~--~~---~~~---~il~~l~~--~g~~~-~----~~ 1025 (1874)
..+.+++.+....+.++.+.+..+++++++. |+.++...| |. ..- ..++++.. +++.+ . .+
T Consensus 758 ~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~ 837 (980)
T 3ibv_A 758 DVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVY 837 (980)
T ss_dssp HHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHH
Confidence 6789999999999999888888888776653 433221111 11 111 12222221 11211 1 22
Q ss_pred hhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhcccc---c----ccchhHhHHHHHHHHhCCCCHHHH--------HHHHH
Q 000196 1026 MHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPRV---Q----VTGHISSLVHHLKLVLDGKNDELR--------KDAVD 1090 (1874)
Q Consensus 1026 ~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~~---~----~~~~~~~ii~~l~~~l~~~~~~l~--------~~al~ 1090 (1874)
+..++-.++.....-.....++.|+..+.+++..- + |..|+-.+++....+..+++-+++ ..+..
T Consensus 838 l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~ 917 (980)
T 3ibv_A 838 FDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLTPLCFEMPVNPNFNTRDGQSLVVLGELAG 917 (980)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHGGGC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Confidence 33334444433222245678899999999987752 1 444433355555555544433333 33444
Q ss_pred HHHHHHHHhcccccc
Q 000196 1091 ALCCLAHALGEDFTI 1105 (1874)
Q Consensus 1091 ~L~~l~~~~g~~f~~ 1105 (1874)
++-.+..+.|..|..
T Consensus 918 ~~k~~~~~~g~~~~~ 932 (980)
T 3ibv_A 918 LQKIILEKLGDIYKS 932 (980)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHH
Confidence 455555555655433
No 23
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.41 E-value=1.5e-10 Score=151.58 Aligned_cols=498 Identities=11% Similarity=0.107 Sum_probs=297.6
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 000196 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1874)
Q Consensus 157 ~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1874)
+-+-|.+.....++.+...++..+..|-+ ++..++.++..+.++++.+|+.+..++..+... .++.
T Consensus 18 i~~~L~~~~~~~k~~~~~kli~~~~~G~d------~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--------~~e~ 83 (591)
T 2vgl_B 18 LKAELNNEKKEKRKEAVKKVIAAMTVGKD------VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--------QPDM 83 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHTTCC------CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--------SHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHCCCC------hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--------CchH
Confidence 33444444445566666666666555532 223455566788999999999999998876542 1233
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000196 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 237 ~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f 316 (1874)
...+.+.+...+.+++ ..+|..|+.+++.+ ....+.+ .+++.+...+.++++.||+.++.++..++...++..
T Consensus 84 ~~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i---~~~~~~~---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 84 AIMAVNSFVKDCEDPN-PLIRALAVRTMGCI---RVDKITE---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp HHTTHHHHGGGSSSSS-HHHHHHHHHHHHTC---CSGGGHH---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHHHcC---ChHHHHH---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 3445567777788764 56677766555543 2222333 345567777889999999999999999998777643
Q ss_pred HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 317 VTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~-~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
.+ +..++.+...|.+++ .|..|+.+++.++..-++. ..+..+..+..+...+.+.++-.+..++.++ ..+
T Consensus 157 ~~---~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l----~~l 229 (591)
T 2vgl_B 157 ED---QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCL----SNY 229 (591)
T ss_dssp HH---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH----HTS
T ss_pred cc---ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHH----HHh
Confidence 21 467888888887544 4788999999987665432 2233344444444444322110111233333 334
Q ss_pred CCCchHHHHHHHHHHHhc--CCCHH-HHHHHHHHHHhC------CCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000196 394 GPVMEPHVRGLLDIMFSA--GLSTT-LVDALEQITVSI------PSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464 (1874)
Q Consensus 394 g~~~~p~l~~ll~~ll~~--~ls~~-l~~~l~~i~~~~------p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 464 (1874)
++.-.+....+++.+... ..++. ..++...+..-. |.....+.+++...+...+.
T Consensus 230 ~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~---------------- 293 (591)
T 2vgl_B 230 NPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS---------------- 293 (591)
T ss_dssp CCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT----------------
T ss_pred CCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc----------------
Confidence 443334555666666543 12233 334555554322 22222222332222211110
Q ss_pred CccCCCccccccCCchhHHHHHHhhcccc-cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccc
Q 000196 465 NVMNIPQQVSDLNGSAPVQLALQTLARFN-FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFG 543 (1874)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~Al~~L~~~~-f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~ 543 (1874)
.+......|+++|+.+. ..+..+.+++.. +....++ +..||+.|...+..+....
T Consensus 294 ------------~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~-~~~~~~d-~~~Ir~~al~~L~~l~~~~---------- 349 (591)
T 2vgl_B 294 ------------GEPEVQYVALRNINLIVQKRPEILKQEIKV-FFVKYND-PIYVKLEKLDIMIRLASQA---------- 349 (591)
T ss_dssp ------------SCHHHHHHHHHHHHHHHHHCCSTTTTCTTT-TSCCTTS-CHHHHHHHHHHHHHTCCSS----------
T ss_pred ------------CCccHHHHHHHHHHHHHHhChHHHHHHHHh-heeccCC-hHHHHHHHHHHHHHHCChh----------
Confidence 12335577888888772 223333343332 2222233 4899999987776654210
Q ss_pred cccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC-CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHH
Q 000196 544 ASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG-NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISV 622 (1874)
Q Consensus 544 ~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~-~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~ 622 (1874)
-+..++..|.. ...+.|.++|..++.+++. +..|.+. ...+++.|+..+.|....|+..++..
T Consensus 350 -------------nv~~iv~~L~~-~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~ 413 (591)
T 2vgl_B 350 -------------NIAQVLAELKE-YATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVV 413 (591)
T ss_dssp -------------THHHHHHHHHH-HTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHH
Confidence 14556666654 3578899999999888852 1233211 24578899999999999999999999
Q ss_pred HHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCCh
Q 000196 623 AGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANN 702 (1874)
Q Consensus 623 l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~ 702 (1874)
++.+...+|......+. .+...++.. .++..+..++|+||+.+...++ .+.+++.++..+.+. ++
T Consensus 414 l~~ii~~~p~~~~~~v~----~L~~~l~~~-~~~~~~~~~~wilGey~~~~~~-----~~~~l~~l~~~~~~~-----~~ 478 (591)
T 2vgl_B 414 IRDIFRKYPNKYESIIA----TLCENLDSL-DEPDARAAMIWIVGEYAERIDN-----ADELLESFLEGFHDE-----ST 478 (591)
T ss_dssp HHHHHHHSCSSCCTTHH----HHHHTTTTC-CSHHHHHHHHHHHHTTCTTCTT-----HHHHHHHHSTTCSSS-----CH
T ss_pred HHHHHHHCcchHHHHHH----HHHHHHHhc-cCHHHHHHHHHHHHcccccccC-----HHHHHHHHHHhhccC-----CH
Confidence 99999888864211111 222233444 5677888999999988766543 345666666555443 67
Q ss_pred hHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHH-hcCcchhhHHHHHHHHHHH
Q 000196 703 GIISGVLVTVGDLARVGGFGMRQYISELMPLIVEAL-LDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l-~d~~~~~~r~~A~~~Lg~l 757 (1874)
.++..++.++..+....++.. ...+..+++.. .|..+.++|+-|...++-+
T Consensus 479 ~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 479 QVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 889888999888877655433 23444444543 4655778999988776654
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.40 E-value=8.8e-11 Score=153.72 Aligned_cols=428 Identities=14% Similarity=0.103 Sum_probs=263.5
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH
Q 000196 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1874)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~ 151 (1874)
+.+.+-+++++...|..|+.++..+.. +.....+.+.+..++. +.++.|++.|+.+++++..... +.++
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~------~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p----~~~~ 157 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRV------DKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINA----QMVE 157 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCS------GGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSC----CCHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCh------HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhhCh----hhcc
Confidence 345556677788778777777766631 2234455667888886 5789999999999999998532 2333
Q ss_pred --HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhc
Q 000196 152 --FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKR 228 (1874)
Q Consensus 152 --~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~-~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1874)
..++.+.+.|. +.+...|.+|+.+|.+++...|.. .....+..++.++..+.|.++..+....++++.+ ...
T Consensus 158 ~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l----~~~ 232 (591)
T 2vgl_B 158 DQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY----NPK 232 (591)
T ss_dssp HHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS----CCC
T ss_pred cccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh----CCC
Confidence 35566666664 666788999999999999988865 4556677788888888888888776666555432 111
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc---chhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN---TGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~---~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
+ ......+++.+...+.+.+ ..++..|+.++..+... ..+.+......+...++... ++++.||..++.++
T Consensus 233 ~----~~~~~~~l~~l~~~l~~~~-~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l 306 (591)
T 2vgl_B 233 D----DREAQSICERVTPRLSHAN-SAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNI 306 (591)
T ss_dssp S----HHHHHHHHHHHTTCSCSST-THHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred C----hHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHH
Confidence 1 1234567777777777664 57888888887776532 23444444455555555433 47899999999999
Q ss_pred HhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhH
Q 000196 306 PRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEAL 383 (1874)
Q Consensus 306 ~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~ 383 (1874)
..++...++.|.+ ++..+ . ++.+.. .|..|+..++.++..- -++.+++.+.+.+.+.+...+..+.
T Consensus 307 ~~i~~~~p~~~~~-~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~~~------nv~~iv~~L~~~l~~~d~~~r~~~v 374 (591)
T 2vgl_B 307 NLIVQKRPEILKQ-EIKVF----F-VKYNDPIYVKLEKLDIMIRLASQA------NIAQVLAELKEYATEVDVDFVRKAV 374 (591)
T ss_dssp HHHHHHCCSTTTT-CTTTT----S-CCTTSCHHHHHHHHHHHHHTCCSS------THHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHhChHHHHH-HHHhh----e-eccCChHHHHHHHHHHHHHHCChh------hHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9998877665432 22211 1 111211 3567777777765322 2456777777777554333345788
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 000196 384 ACVGNIARAMGPVMEPHVRGLLDIMFSAG--LSTTLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATP 461 (1874)
Q Consensus 384 ~~l~~l~~~~g~~~~p~l~~ll~~ll~~~--ls~~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~ 461 (1874)
.+++.++..+++....+++.+++.+-..+ ...+...++..+....|.....+...+.+.+.
T Consensus 375 ~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~----------------- 437 (591)
T 2vgl_B 375 RAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLD----------------- 437 (591)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTT-----------------
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHH-----------------
Confidence 89998887765445556666665543332 22233445666666667654433333322210
Q ss_pred CCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccc
Q 000196 462 IRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQ 541 (1874)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~ 541 (1874)
+..+.+....++.+||+|...-..-.+.++.. ..-+.+.++.||.++..++.+++...+..
T Consensus 438 -------------~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l-~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~----- 498 (591)
T 2vgl_B 438 -------------SLDEPDARAAMIWIVGEYAERIDNADELLESF-LEGFHDESTQVQLTLLTAIVKLFLKKPSE----- 498 (591)
T ss_dssp -------------TCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH-STTCSSSCHHHHHHHHHHHHHHHTTCCST-----
T ss_pred -------------hccCHHHHHHHHHHHHcccccccCHHHHHHHH-HHhhccCCHHHHHHHHHHHHHHHhcCchH-----
Confidence 11133345778899999832111111222222 22233457899999999999998643310
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHhcC-CChhHHHHHHHhc
Q 000196 542 FGASRSNRTGGKRRRLIEELVEKLLIAAVAD-ADVTVRHSIFSSL 585 (1874)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d-~~~~vR~~~l~~l 585 (1874)
....+..++..+..| +|++||..+...+
T Consensus 499 ----------------~~~~i~~ll~~~~~d~~d~evrdRA~~y~ 527 (591)
T 2vgl_B 499 ----------------TQELVQQVLSLATQDSDNPDLRDRGYIYW 527 (591)
T ss_dssp ----------------THHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHhhhcCCChHHHHHHHHHH
Confidence 123344555555555 6788888877665
No 25
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.39 E-value=8.2e-10 Score=150.90 Aligned_cols=394 Identities=10% Similarity=0.125 Sum_probs=242.6
Q ss_pred ChHhHHHHHHHHHHHHHh------CccccccchHHHHHHHHHHhhccCC------CCC--------ChhHH---HHHHHH
Q 000196 655 DNKCREESAKLLGCLIRN------CERLIRPYIAPIHKALVARLLEGTG------INA--------NNGII---SGVLVT 711 (1874)
Q Consensus 655 ~~~~r~~a~~~L~~l~~~------~~~~~~py~~~il~~ll~~l~~~~~------~~~--------~~~v~---~~~~~~ 711 (1874)
+.+.-..++.....+++. ....++|++..++..++.++.-+.. ... +.+-. ...-.+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 334334566666666642 2345778888889999888876531 000 11110 112256
Q ss_pred HHHHHHhcccchhhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHhcC----C
Q 000196 712 VGDLARVGGFGMRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYV-ITPYNEYPQLLGLLLKMLNG----E 785 (1874)
Q Consensus 712 l~~La~~~g~~~~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~~-i~p~~~~p~ll~~Ll~~l~~----~ 785 (1874)
|..++...|.+ .+..+++.+.+.+.. ..++..|++|+.++|.++++.... .+++ .|++++.|++++.. +
T Consensus 437 L~~l~~l~~~~---~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~--l~~vi~~Ll~l~~~~~~~d 511 (1023)
T 4hat_C 437 LVYLTHLNVID---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRF--VVTVIKDLLDLCVKKRGKD 511 (1023)
T ss_dssp HHHHHHHCHHH---HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHH--HHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhccCHHH---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHH--HHHHHHHHHHhhhccccCc
Confidence 66666665543 334445555555543 247999999999999998765432 2333 47889988888753 1
Q ss_pred CCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHH
Q 000196 786 LVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRI 865 (1874)
Q Consensus 786 ~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~i 865 (1874)
....+|..++.++|...- +.. ...+ |...+++.|+..
T Consensus 512 ~k~~v~~t~~~~lGry~~---wl~---------------------------------------~~~~-~L~~vl~~L~~~ 548 (1023)
T 4hat_C 512 NKAVVASDIMYVVGQYPR---FLK---------------------------------------AHWN-FLRTVILKLFEF 548 (1023)
T ss_dssp HHHHHHHHHHHHHHTCHH---HHH---------------------------------------HCHH-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH---HHh---------------------------------------ccHH-HHHHHHHHHHHH
Confidence 223455666677776421 110 0012 346778889999
Q ss_pred ccCCCchhhHHHHHHHHHHHHHHhCCCC--------CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHH--hHH
Q 000196 866 LRDPSLASYHQKVVGSLMFIFKSMGLGC--------VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQ--HIR 935 (1874)
Q Consensus 866 L~d~s~~~~~~~v~~al~~i~~~~~~~~--------~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~--~i~ 935 (1874)
|.|+.. ....+++.|+..|...++..+ .||+++++..+...+..-++..+..++.++|.++..++. ...
T Consensus 549 l~~~~~-~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~ 627 (1023)
T 4hat_C 549 MHETHE-GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERN 627 (1023)
T ss_dssp TTCSCH-HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred hhcCCH-HHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHH
Confidence 876642 356689999999998876443 479999999888888766667778889999999987753 345
Q ss_pred HhHHHHHHHHHHhhcCCC-----CCcc----cccccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchh
Q 000196 936 KYLQELFSLISELWSSFS-----LPAT----NRTYRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYT 1006 (1874)
Q Consensus 936 ~y~~~i~~~i~~~~~~~~-----~~~~----~~~~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~ 1006 (1874)
.++..+++.+.+.|+... .|.- ........++++...++.++|..|.||+..++|.++++.+..
T Consensus 628 ~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~------- 700 (1023)
T 4hat_C 628 RLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAV------- 700 (1023)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-------
Confidence 688888888887776421 0000 001122456888888999999999999999999998887531
Q ss_pred hHHHHHHHHHHHhcchhhhhhhhHHHHHHhhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHHH----HHhCCCC
Q 000196 1007 YVLDILHTLEVFGGTLDEHMHLLLPALIRLFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHLK----LVLDGKN 1081 (1874)
Q Consensus 1007 ~~~~il~~l~~~g~~~~~~~~~ilp~l~~~~~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l~----~~l~~~~ 1081 (1874)
...+-.++..-|.....+- .++. -..+|+..++.+...+.. .+.......++++++ .--....
T Consensus 701 -s~~i~~~~~~~g~~~~~~~------~~r~-----~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~ 768 (1023)
T 4hat_C 701 -SSMISAQVAAEGLIATKTP------KVRG-----LRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNV 768 (1023)
T ss_dssp -HHHHHHHHHHHCGGGGGSH------HHHH-----HHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSC
T ss_pred -HHHHHHHHHhCCchhhccH------HHHH-----HHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCC
Confidence 1112233333343332210 1111 123555666655544332 232223333444443 3223334
Q ss_pred HHHH-HHHHHHHHHHHHHhccccccchhhHHHHHHh
Q 000196 1082 DELR-KDAVDALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1082 ~~l~-~~al~~L~~l~~~~g~~f~~~ip~i~~~l~~ 1116 (1874)
++.| ...++++..++.++|..+.+.+|.|...+..
T Consensus 769 ~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~ 804 (1023)
T 4hat_C 769 PDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFE 804 (1023)
T ss_dssp GGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4555 5678999999999999988899998888765
No 26
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.38 E-value=2.8e-10 Score=149.28 Aligned_cols=429 Identities=14% Similarity=0.087 Sum_probs=253.3
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH
Q 000196 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF 152 (1874)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~ 152 (1874)
.+.+++.+++...|.-|-+++..+..-. +....-..+.+.+-+. +.++.++..|.+++|.+.. +++++.
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~----~e~~~l~in~l~kDL~-~~n~~vr~lAL~~L~~i~~------~~~~~~ 142 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDER----QDVHLLMTNCIKNDLN-HSTQFVQGLALCTLGCMGS------SEMCRD 142 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHS-CSSSHHHHHHHHHHHHHCC------HHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHhcC-CCCHhHHHHHHHHHHhcCC------HHHHHH
Confidence 3456778889988888888888886542 2233445677777775 5688999999999999863 456666
Q ss_pred HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhh
Q 000196 153 QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW 232 (1874)
Q Consensus 153 ~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~ 232 (1874)
.++.+...|. +++...|.+|+.++..+....|+.+. .+++.+...|.|+++.|+.+|..++..+... .+..
T Consensus 143 l~~~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~----~~~~ 213 (618)
T 1w63_A 143 LAGEVEKLLK-TSNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCER----SPDM 213 (618)
T ss_dssp HHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS----HHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHh----ChHH
Confidence 6666666665 45668899999999999999998654 5566667888999999999999998876421 1100
Q ss_pred HHHHHHHHHHHHHhhcc---------------CCCChhHHHHHHHHHHHHHHcchh---hhH------------------
Q 000196 233 RVQWYYRMFEATQDGLG---------------RNAPVHSIHGSLLAVGELLRNTGE---FMM------------------ 276 (1874)
Q Consensus 233 ~~~~~~~i~~~~~~~l~---------------~~~~~~~~~~al~~l~~ll~~~~~---~~~------------------ 276 (1874)
...+..+.+.+...|. .+++|- +...+.+++.+....++ .+.
T Consensus 214 -~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 291 (618)
T 1w63_A 214 -LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL-QVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGN 291 (618)
T ss_dssp -HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH-HHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHH
Confidence 1122222222222111 011222 11222233222211100 000
Q ss_pred ----------------HHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--C
Q 000196 277 ----------------SRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--E 337 (1874)
Q Consensus 277 ----------------~~~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~ 337 (1874)
+.+ ......+..++.++++.||..++.++..++...+..|. .| ...++.++.+++ .
T Consensus 292 aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-~~----~~~i~~~l~d~d~~I 366 (618)
T 1w63_A 292 AILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQ-RH----RSTIVDCLKDLDVSI 366 (618)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHG-GG----HHHHHHGGGSSCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHH-HH----HHHHHHHccCCChhH
Confidence 111 12333444555666777777777777777765444322 22 334445555433 3
Q ss_pred cchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCH
Q 000196 338 RDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG--LST 415 (1874)
Q Consensus 338 R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~--ls~ 415 (1874)
|..|+++++.++..- . ++.+++.+.+.+.+.+.+.+..++.+++.++..+.+.+..|++.+++.+-..+ ...
T Consensus 367 r~~alelL~~l~~~~--n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~ 440 (618)
T 1w63_A 367 KRRAMELSFALVNGN--N----IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRD 440 (618)
T ss_dssp HHHHHHHHHHHCCSS--S----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCS
T ss_pred HHHHHHHHHHHcccc--c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHH
Confidence 666777776665421 1 23344444444433332334578999999999988888889999887766544 455
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccccc-
Q 000196 416 TLVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNF- 494 (1874)
Q Consensus 416 ~l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f- 494 (1874)
+....+.++....|.+...+...+.+.+..- .........++.+||+|..
T Consensus 441 ~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~-----------------------------~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 441 DAVPNLIQLITNSVEMHAYTVQRLYKAILGD-----------------------------YSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp SHHHHHHHHHHHSCSTHHHHHHHHHHHHHHC-----------------------------CSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHhcc-----------------------------cccHHHHHHHHHHHhhhHHH
Confidence 5677888888888988877777776665410 0011133468899999831
Q ss_pred -C-C-------Ccch-hhHHHHHhhhcc--CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHH
Q 000196 495 -K-G-------HDLL-EFARDSVVLYLD--DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELV 562 (1874)
Q Consensus 495 -~-~-------~~l~-~~v~~~~~~~l~--~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 562 (1874)
. | .... ..+.+.+..++. ..++.||.++..++.++....+. . .+.+
T Consensus 492 i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~------------------~----~~~l 549 (618)
T 1w63_A 492 LVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC------------------T----VNRI 549 (618)
T ss_dssp HTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS------------------C----HHHH
T ss_pred hcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc------------------h----HHHH
Confidence 0 0 0000 111222222332 45789998888888888764321 1 2233
Q ss_pred HHHHHHHhcCCChhHHHHHHHhc
Q 000196 563 EKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
..++.....|+|.+||..+...+
T Consensus 550 ~~~L~~~~~~~d~evrdRA~~y~ 572 (618)
T 1w63_A 550 KKVVSIYGSSIDVELQQRAVEYN 572 (618)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444445666777776665544
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.35 E-value=1.6e-11 Score=156.32 Aligned_cols=356 Identities=14% Similarity=0.101 Sum_probs=234.9
Q ss_pred hhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHH--HHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 509 LYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIE--ELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 509 ~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
..+.++++.+|..|+.++.+++..... ......+. .+++.|+.....+.++.+|..++.+|.
T Consensus 27 ~~l~s~~~~~r~~A~~~L~~l~~~~~~----------------~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~ 90 (450)
T 2jdq_A 27 EMIFSKSPEQQLSATQKFRKLLSKEPN----------------PPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLT 90 (450)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHSSSS----------------CCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhcCCCC----------------CcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 445677899999999999988642110 00122222 466666665444448999999888874
Q ss_pred CCCCcc----hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHH
Q 000196 587 GNRGFD----DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 587 ~~~~f~----~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
.-.... ..+.....++.++..+++++++||..|+.+|+.++...+..-...+. ..+..++..+..+ .+...|..
T Consensus 91 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~ 169 (450)
T 2jdq_A 91 NIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRN 169 (450)
T ss_dssp HHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHH
T ss_pred HHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHH
Confidence 200000 11223457899999999999999999999999999876532111111 1122233334433 56788999
Q ss_pred HHHHHHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHHHHh
Q 000196 662 SAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALL 739 (1874)
Q Consensus 662 a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~~l~ 739 (1874)
|+++|+.++... +..-..++..+++.++..+.+. ++.++..++.+++.++....+...... ..++|.++..|.
T Consensus 170 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~ 244 (450)
T 2jdq_A 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS-----DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM 244 (450)
T ss_dssp HHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccC-----CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence 999999999765 3333344567778888888764 678888999999988764322221111 357888999888
Q ss_pred cCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCc
Q 000196 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1874)
Q Consensus 740 d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~ 819 (1874)
+. +..+|..|+.+|+.++...+........ ..+++.|+.+++++ ++.+|.++++++|.++.-.+...+
T Consensus 245 ~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~--------- 312 (450)
T 2jdq_A 245 HN-DYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQ--------- 312 (450)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHH---------
T ss_pred CC-chhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHH---------
Confidence 65 6789999999999998765432111111 35888999999765 789999999999988642211100
Q ss_pred ccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc--
Q 000196 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL-- 897 (1874)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l-- 897 (1874)
.....-+++.|+..|++++. ..+..++.++.++..........++
T Consensus 313 --------------------------------~~~~~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 313 --------------------------------TVIDANIFPALISILQTAEF-RTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp --------------------------------HHHHTTHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred --------------------------------HHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 00011346677788876643 4566788888888765322222222
Q ss_pred cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000196 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1874)
Q Consensus 898 ~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1874)
..++|.++..++..++.++..++..|+.++....
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 3589999999998888899999999988887544
No 28
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=3.5e-11 Score=138.38 Aligned_cols=190 Identities=14% Similarity=0.168 Sum_probs=160.3
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~ 241 (1874)
++++|..|.+|+..|..+++++|....+.+..+++.+...+. |++..||.+|+.+++.+...+.. .-..+...++
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~----~~~~~~~~il 100 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK----RFSNYASACV 100 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG----GGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHH
Confidence 468899999999999999999888766778899999999995 99999999999999999876542 2245788899
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh-hhChhhHHHHH
Q 000196 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA-HFLRDRFVTNY 320 (1874)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la-~~~~~~f~~~y 320 (1874)
+.+...+++++ ..+|.++..++..+....+ ++.+++.++..++++++.||..++..|+.++ .+.++.+...|
T Consensus 101 p~ll~~l~d~~-~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~ 173 (242)
T 2qk2_A 101 PSLLEKFKEKK-PNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL 173 (242)
T ss_dssp HHHHHGGGCCC-HHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH
Confidence 99999999875 6889999999999987542 4678888889999999999999999999965 44455444568
Q ss_pred HHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhHHH
Q 000196 321 LKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTI 363 (1874)
Q Consensus 321 l~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~-~~p~l~~i 363 (1874)
++.++|.+...|.+.. .|..|+.++|.++..+|.+ +.+|++.+
T Consensus 174 l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 174 LKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhc
Confidence 9999999999996543 6899999999999999986 77888664
No 29
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.31 E-value=9.8e-11 Score=148.99 Aligned_cols=357 Identities=11% Similarity=0.055 Sum_probs=239.8
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH--HHHHHHHhhhcCC-ChhhhhhHHHHHhHhhcccc
Q 000196 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD--QLYDRISGLLESN-DAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 26 ~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~--~l~~~i~~l~~s~-~~~~r~~~i~ai~~li~~~~ 101 (1874)
+..+++.|++.+.+.+ .|+..|+.++.. +.++. ....+. .+.+.+.++++++ +...|..++.++..+.....
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~---~~~~~-~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSK---EPNPP-IDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHS---SSSCC-HHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCCCc-HHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 7788999988764444 588888887621 11211 222222 3566666777776 78889999999998876421
Q ss_pred CcchhHH-HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 102 GENASKV-SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 102 ~~~~~~~-~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
......+ ....+.|..++. +++.+++..|+++|+.++.........+++ ..++.++..+.++.+...|..|+.+|+.
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~-~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLS-SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 1111111 134567777775 568999999999999998752111111222 2466666677655667889999999999
Q ss_pred HHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHhhccCCCChhHH
Q 000196 180 MAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 180 la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~i~~~~~~~l~~~~~~~~~ 257 (1874)
++.+. |..-...+..++|.+...+.++++.+|..|+.+|+.+.... ....... -..+++.+...+.++ +++++
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~i~~L~~ll~~~-~~~v~ 251 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP----NDKIQAVIDAGVCRRLVELLMHN-DYKVV 251 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS----HHHHHHHHHTTTHHHHHHHTTCS-CHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC----cHHHHHHHHcCcHHHHHHHHCCC-chhHH
Confidence 99876 65444556888999999999999999999999998765321 1111111 124667777777665 47899
Q ss_pred HHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCC
Q 000196 258 HGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIP 335 (1874)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~ 335 (1874)
..++.+|+.+....++.....++ .+++.++..+++.++.+|+.++.+++.++...+.. .+..+ ..+++.++..|+++
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~~l~~~ 330 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ-IQTVIDANIFPALISILQTA 330 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHH-HHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhcC
Confidence 99999999988755433222222 36778888888999999999999999999755433 22233 36778888888654
Q ss_pred C--CcchHHHHHHHHHhhch-hhhhhhh-HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 336 A--ERDSGFIALGEMAGALD-GELFHYL-PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 336 ~--~R~~a~~alg~la~~v~-~~~~p~l-~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
+ .|..|..+|+.++.... ..+...+ ..+++.+.+.+.+.+.+.+..++.+++.++...
T Consensus 331 ~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 3 57899999999987532 2232233 347778888886654444567888888888753
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.29 E-value=3.6e-11 Score=137.54 Aligned_cols=196 Identities=10% Similarity=0.134 Sum_probs=163.7
Q ss_pred CCCcchhHHHHHHHHHH-HHhhcCccc--hhchHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHh-hcchhhHHHHH
Q 000196 163 GDRVEYRRFAAVLILKE-MAENASTVF--NVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIE-KRETRWRVQWY 237 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~-la~~~p~~~--~~~l~~il~~i~~~l-~D~~~~VR~aA~~al~~~~~~i~-~r~~~~~~~~~ 237 (1874)
++++|..|.+|+..|.. +++++|... ...+..++..+...+ .|++..||.+|+.|++++.+.+. .+ +...++
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~---f~~~y~ 102 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG---FSKDYV 102 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT---SCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc---ccHHHH
Confidence 46788999999999999 999999887 566778999999999 79999999999999999886654 21 222678
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhh-HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhCh---
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM-MSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLR--- 313 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~-~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~--- 313 (1874)
..+++.++..+++.. ..++.++..++..+.+..+... .++++.+++.++..++++++.+|..++.+|.+++...+
T Consensus 103 ~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcc
Confidence 889999999998875 5677888888999888654322 13478899999999999999999999999999997766
Q ss_pred hhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh-hhhhhHHH
Q 000196 314 DRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE-LFHYLPTI 363 (1874)
Q Consensus 314 ~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~-~~p~l~~i 363 (1874)
..|.. |+ +.++|.+...+...+ .|.+|+.|+|.++..+|++ +.||++.+
T Consensus 182 ~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 182 STLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred hhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45654 89 999999999997655 6999999999999999985 88888774
No 31
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.28 E-value=4.5e-08 Score=133.88 Aligned_cols=271 Identities=16% Similarity=0.135 Sum_probs=166.1
Q ss_pred CChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhc-CCChhHHHHHHHhccCCCCcc
Q 000196 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA-DADVTVRHSIFSSLYGNRGFD 592 (1874)
Q Consensus 514 ~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~-d~~~~vR~~~l~~l~~~~~f~ 592 (1874)
.++..+.+|..++..+....... ... . ........+++ +++..++...+. ++.+.||.+.+..++ ++.
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~---~~~---~-~~~~~~lp~l~-~ll~~ll~s~i~~~~hp~V~~~~~~~l~---rys 523 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGP---DAF---F-NEVDKSPTVLS-QILALVTTSQVCRHPHPLVQLLYMEILV---RYA 523 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSG---GGT---B-CSSSCCBCHHH-HHHHHHHHSSTTTCCCHHHHHHHHHHHH---HTG
T ss_pred CCHHHHHHHHHHHHHHHhhcccc---ccc---c-CcccchhHHHH-HHHHHHHhCCCCCCCCHHHHHHHHHHHH---HHH
Confidence 45788888777766554321100 000 0 00011122333 444455443332 778999999999886 444
Q ss_pred hhhc-cHhh----HHHHHH--HhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhC--CCC--------
Q 000196 593 DFLA-QADC----LSAIFA--ALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQS--SAD-------- 655 (1874)
Q Consensus 593 ~~L~-~~~~----l~~L~~--~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~--~~~-------- 655 (1874)
.++. ++++ ++.++. .+.+++..||..|..++.++++.++..+.|++..++..+-..+... +..
T Consensus 524 ~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~ 603 (980)
T 3ibv_A 524 SFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPT 603 (980)
T ss_dssp GGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCC
T ss_pred HHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccc
Confidence 4442 2344 455555 5667888999999999999999999888898887554332222211 000
Q ss_pred ---------hHhHHHHHHHHHHHHHhCc---cccccchHHHHHHHHHHhhccCC--CCC-Chh-HHHHHHHHHHHHHHhc
Q 000196 656 ---------NKCREESAKLLGCLIRNCE---RLIRPYIAPIHKALVARLLEGTG--INA-NNG-IISGVLVTVGDLARVG 719 (1874)
Q Consensus 656 ---------~~~r~~a~~~L~~l~~~~~---~~~~py~~~il~~ll~~l~~~~~--~~~-~~~-v~~~~~~~l~~La~~~ 719 (1874)
.+.+-.-.+++|.++...+ +....|+..++..++..+..... ... +.. -....+.++|.+++..
T Consensus 604 ~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf 683 (980)
T 3ibv_A 604 LNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGF 683 (980)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTS
T ss_pred hhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccC
Confidence 1124456778888887743 34456777777777776553210 000 111 2235678889998754
Q ss_pred ccc------hhhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHH
Q 000196 720 GFG------MRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR 792 (1874)
Q Consensus 720 g~~------~~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~ 792 (1874)
.+. +...+.+.++.++..+.. ..+..+|+.+..++.+++...|..+.|+. |.+++.++...+.. +. .
T Consensus 684 ~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~l--p~~i~~ll~~~~~~---e~-~ 757 (980)
T 3ibv_A 684 PARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKV--PQLISILLNSIDMN---EL-V 757 (980)
T ss_dssp CSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTH--HHHHHHHHHHCCTT---TH-H
T ss_pred CcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHH--HHHHHHHHhcCCHH---HH-H
Confidence 321 455677888888777763 34577999999999999999999888875 78888888654433 22 3
Q ss_pred HHHHHHHHh
Q 000196 793 EVLKVLGIM 801 (1874)
Q Consensus 793 ~al~~lg~l 801 (1874)
..+.++|.+
T Consensus 758 ~fL~l~~ql 766 (980)
T 3ibv_A 758 DVLSFISQL 766 (980)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 456666665
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.27 E-value=6.6e-09 Score=136.29 Aligned_cols=472 Identities=13% Similarity=0.100 Sum_probs=266.2
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 000196 157 ALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW 236 (1874)
Q Consensus 157 ~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~ 236 (1874)
++..+++..-+. |.-+.+.+..+++..|+.+ .-++..+.+.|.|+++.||..|..+++.+. . .+.
T Consensus 75 vik~~~s~~~~~-Krl~Yl~~~~~~~~~~e~~----~l~in~l~kDL~~~n~~vr~lAL~~L~~i~------~----~~~ 139 (618)
T 1w63_A 75 CLKLIASQKFTD-KRIGYLGAMLLLDERQDVH----LLMTNCIKNDLNHSTQFVQGLALCTLGCMG------S----SEM 139 (618)
T ss_dssp HHHHHHSSSHHH-HHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHSCSSSHHHHHHHHHHHHHC------C----HHH
T ss_pred HHHHHcCCchHH-HHHHHHHHHHHhCCCcHHH----HHHHHHHHHhcCCCCHhHHHHHHHHHHhcC------C----HHH
Confidence 444444544444 4445556677766554432 245667778999999999999999988652 1 134
Q ss_pred HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000196 237 YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 237 ~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f 316 (1874)
...+++.+...+.+++ ..+|.+|+.++..+....++.+. .+.+.+...+.++++.|+.+++.++..++..+++.
T Consensus 140 ~~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~- 213 (618)
T 1w63_A 140 CRDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM- 213 (618)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-
Confidence 5677788888888774 68899999999999887666553 23444555667899999999999999998766542
Q ss_pred HHHHHHHHHHHHHHhhcC----C-----------C--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCC
Q 000196 317 VTNYLKICMNHILTVLRI----P-----------A--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRGKPS 379 (1874)
Q Consensus 317 ~~~yl~~~~~~Ll~~L~~----~-----------~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~ 379 (1874)
.+ ++..++|.+...|.+ . . .+...+++++.++..-+. .
T Consensus 214 ~~-~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~----------------------- 268 (618)
T 1w63_A 214 LA-HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-S----------------------- 268 (618)
T ss_dssp HH-HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-H-----------------------
T ss_pred HH-HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-H-----------------------
Confidence 22 334555655555432 0 0 112333333333221100 0
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCH--H-HHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCC
Q 000196 380 LEALACVGNIARAMGPVMEPHVRGLLDIMFSAGLST--T-LVDALEQITVSIPSLLPTIQDRLLDCISFVLSKSHYSQAR 456 (1874)
Q Consensus 380 ~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~ls~--~-l~~~l~~i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~ 456 (1874)
.+.+.+++..++...- ..-+. . +.++.+.+.. +..
T Consensus 269 --------------~~~~~~~L~~l~~~~~-~~~~~~~aV~~ea~~~i~~-l~~-------------------------- 306 (618)
T 1w63_A 269 --------------SEAMNDILAQVATNTE-TSKNVGNAILYETVLTIMD-IKS-------------------------- 306 (618)
T ss_dssp --------------HHTTHHHHHHHHHTSC-CSSTHHHHHHHHHHHHHHH-SCC--------------------------
T ss_pred --------------HHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHh-cCC--------------------------
Confidence 0111222222211100 00000 0 0011111100 000
Q ss_pred CCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCC
Q 000196 457 PAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSG 536 (1874)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~ 536 (1874)
+......|.+.| ..++.+.++++|..|..+++.+....+
T Consensus 307 ---------------------~~~l~~~a~~~L------------------~~~L~~~d~~vr~~aL~~L~~i~~~~p-- 345 (618)
T 1w63_A 307 ---------------------ESGLRVLAINIL------------------GRFLLNNDKNIRYVALTSLLKTVQTDH-- 345 (618)
T ss_dssp ---------------------CHHHHHHHHHHH------------------HHHHTCSSTTTHHHHHHHHHHHHHHHH--
T ss_pred ---------------------CHHHHHHHHHHH------------------HHHHhCCCCchHHHHHHHHHHHHhhCH--
Confidence 000011122222 233555667888888777777764322
Q ss_pred CcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhccC---CCCcchhhccHhhHHHHHHHhCCCCH
Q 000196 537 VSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLYG---NRGFDDFLAQADCLSAIFAALNDEDF 613 (1874)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~---~~~f~~~L~~~~~l~~L~~~l~D~~~ 613 (1874)
..+......++. .+.|++..||..+++.|.. ...+ ..+++.+...+.+.+.
T Consensus 346 -------------------~~~~~~~~~i~~-~l~d~d~~Ir~~alelL~~l~~~~nv------~~iv~eL~~~l~~~d~ 399 (618)
T 1w63_A 346 -------------------NAVQRHRSTIVD-CLKDLDVSIKRRAMELSFALVNGNNI------RGMMKELLYFLDSCEP 399 (618)
T ss_dssp -------------------HHHGGGHHHHHH-GGGSSCHHHHHHHHHHHHHHCCSSST------HHHHHHHHHHHHHCCH
T ss_pred -------------------HHHHHHHHHHHH-HccCCChhHHHHHHHHHHHHcccccH------HHHHHHHHHHHHhCCH
Confidence 111111222222 4578888888888887631 1111 2356666677777889
Q ss_pred HHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhh
Q 000196 614 DVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLL 693 (1874)
Q Consensus 614 ~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~ 693 (1874)
++|..++..+++++...+.....++. .++..+... + ...+.++...+..+++..++. -..++..+...+.
T Consensus 400 e~r~~~v~~I~~la~k~~~~~~~~v~----~ll~lL~~~-~-~~v~~~~~~~l~~ii~~~p~l----~~~~v~~L~~~l~ 469 (618)
T 1w63_A 400 EFKADCASGIFLAAEKYAPSKRWHID----TIMRVLTTA-G-SYVRDDAVPNLIQLITNSVEM----HAYTVQRLYKAIL 469 (618)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHH----HHHHHHHHT-G-GGSCSSHHHHHHHHHHHSCST----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHH----HHHHHHHhc-c-chhHHHHHHHHHHHHhcChhH----HHHHHHHHHHHHh
Confidence 99999999999999987654333333 333333333 2 234445667777888776542 2345566666666
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHhccc----c---hhhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhccccc
Q 000196 694 EGTGINANNGIISGVLVTVGDLARVGGF----G---MRQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGYVI 765 (1874)
Q Consensus 694 ~~~~~~~~~~v~~~~~~~l~~La~~~g~----~---~~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~~i 765 (1874)
+.. ....+...++.++|+.+..... . +...-..+++.+...+.. ..+..+|..++.+++++....+.
T Consensus 470 ~~~---~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-- 544 (618)
T 1w63_A 470 GDY---SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-- 544 (618)
T ss_dssp HCC---SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--
T ss_pred ccc---ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--
Confidence 532 1334455678899998764321 0 011122344555554432 34678999999999998876532
Q ss_pred cccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 766 TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 766 ~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
. .+.+..++.....+.+.++|..|...+..+..
T Consensus 545 ----~-~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 545 ----T-VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp ----C-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred ----h-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 1 23444555555566689999999988877653
No 33
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.27 E-value=2.9e-07 Score=125.86 Aligned_cols=778 Identities=11% Similarity=0.104 Sum_probs=402.3
Q ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh-cCc
Q 000196 108 VSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN-AST 186 (1874)
Q Consensus 108 ~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~-~p~ 186 (1874)
+..+...+..+..+ +.+.++.|-+.|..+-..++... .+...|....+...|+.|+..|+..... ...
T Consensus 15 v~~Le~av~~ly~p--~~~~r~~A~~~L~~~q~sp~aw~---------~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~ 83 (1023)
T 4hat_C 15 IALLDQVVSTFYQG--SGVQQKQAQEILTKFQDNPDAWQ---------KADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1023)
T ss_dssp HHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHCTTGGG---------GHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCccHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 44555666666654 34588888888988877654322 1233333344567888888888876653 322
Q ss_pred cchhchHHHHHHHHHhh----cCC-----chhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHH
Q 000196 187 VFNVHVAEFVDAIWVAL----RDP-----TLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 187 ~~~~~l~~il~~i~~~l----~D~-----~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 257 (1874)
.=......+-..++..+ .+| .+.||..-+.++..++. ++-. ..| +.+++.+...+..+ ....
T Consensus 84 L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~----~~~p--~~W-p~~l~dL~~~l~~~--~~~~ 154 (1023)
T 4hat_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILK----QEWP--QNW-PEFIPELIGSSSSS--VNVC 154 (1023)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHH----HHTT--TTC-TTHHHHHHHHTTTC--HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH----HhCh--hhc-hHHHHHHHHHhcCC--HHHH
Confidence 21222233333333333 343 24555556666555443 2210 123 34566666656543 3456
Q ss_pred HHHHHHHHHHHHcc-----h-----------hhhHHHHHHHHHHHHHHhh-cchhHHHHHHHHHhHhHhhhChhhHHHHH
Q 000196 258 HGSLLAVGELLRNT-----G-----------EFMMSRYREVAEIVLRYLE-HRDRLVRLSITSLLPRIAHFLRDRFVTNY 320 (1874)
Q Consensus 258 ~~al~~l~~ll~~~-----~-----------~~~~~~~~~i~~~ll~~~~-~~~~~vr~~~~~~i~~la~~~~~~f~~~y 320 (1874)
...+.+|..|.+-. . +.|...++.++..+...++ ..++.+..+++.++.....|.+-..+-
T Consensus 155 ~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~-- 232 (1023)
T 4hat_C 155 ENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIY-- 232 (1023)
T ss_dssp HHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHH--
T ss_pred HHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhc--
Confidence 66677776665521 1 1344556666665555554 356778888999999988887754321
Q ss_pred HHHHHHHHH-HhhcCCCCcchHHHHHHHHHh-hc-hh--hhh----hhhHHHHHHH-HHhh----------cCCCCCCCc
Q 000196 321 LKICMNHIL-TVLRIPAERDSGFIALGEMAG-AL-DG--ELF----HYLPTITSHL-REAI----------APRRGKPSL 380 (1874)
Q Consensus 321 l~~~~~~Ll-~~L~~~~~R~~a~~alg~la~-~v-~~--~~~----p~l~~i~~~l-~~~L----------~~~~~~~~~ 380 (1874)
-..+++.++ ..|..++.|..|.+||..++. .. +. .+. ..++.+++.+ ...+ .... ....
T Consensus 233 ~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~-~~D~ 311 (1023)
T 4hat_C 233 ETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANAN-GNDQ 311 (1023)
T ss_dssp SSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTC-TTHH
T ss_pred chhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccc-cchH
Confidence 146778888 777777789999999999876 22 22 122 2233444444 2211 1111 1112
Q ss_pred hhHHHHHHHHHHhCC----------CchHHHHHHHHHHHhcC-CC-HHH----HHHHHHHHHhCC---CChHHHHHHHHH
Q 000196 381 EALACVGNIARAMGP----------VMEPHVRGLLDIMFSAG-LS-TTL----VDALEQITVSIP---SLLPTIQDRLLD 441 (1874)
Q Consensus 381 ~a~~~l~~l~~~~g~----------~~~p~l~~ll~~ll~~~-ls-~~l----~~~l~~i~~~~p---~l~~~i~~~ll~ 441 (1874)
..+..++.+...+|+ .+.+.+..++..|+.+. .. .+. .+.+..+.+.+- .......+-+.+
T Consensus 312 e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~ 391 (1023)
T 4hat_C 312 SFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ 391 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 334444444433332 22344444455666642 22 222 234444443221 111111111222
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCccCCCccc-c----ccCCchhHHHHHHhhccc-ccCCCcchhhHHHHHhhhccC--
Q 000196 442 CISFVLSKSHYSQARPAATPIRGNVMNIPQQV-S----DLNGSAPVQLALQTLARF-NFKGHDLLEFARDSVVLYLDD-- 513 (1874)
Q Consensus 442 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~Al~~L~~~-~f~~~~l~~~v~~~~~~~l~~-- 513 (1874)
.+...+.+-.+.+ ..... .+..+++ . +.++.+.-...=++|... ...+..+.+.+.+.+...+.+
T Consensus 392 L~~vli~km~~P~----e~~iv---e~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~ 464 (1023)
T 4hat_C 392 LRLVIIENMVRPE----EVLVV---ENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSE 464 (1023)
T ss_dssp HHHHHHHSCCCCT----TCCEE---ECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHhcCCCc----ccccC---CCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCC
Confidence 2222233322211 00000 0000001 0 001100000000233221 111111222222222223333
Q ss_pred CChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhc----CCChhHHHHHHHhccCCC
Q 000196 514 EDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVA----DADVTVRHSIFSSLYGNR 589 (1874)
Q Consensus 514 ~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~----d~~~~vR~~~l~~l~~~~ 589 (1874)
.++..|.||.-+++.+...... ....+.+..+++.|+...-. |+...||.+++-.++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~----------------~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lG--- 525 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSE----------------DTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVG--- 525 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCH----------------HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHHcCCCc----------------hhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHH---
Confidence 5799999998888877532110 01245667777766654321 455667777777775
Q ss_pred Ccchhhc-cH----hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCcc--------chHHHHHHHHHHHHHhhCCCCh
Q 000196 590 GFDDFLA-QA----DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYV--------LPALRRHLIQLLTYLEQSSADN 656 (1874)
Q Consensus 590 ~f~~~L~-~~----~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v--------~p~l~~~l~~~l~~l~~~~~~~ 656 (1874)
++-+++. ++ .++..|+..++|+++.|+..|..++..+++.+...+ .|++..++..+..... . -+.
T Consensus 526 ry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~-~-l~~ 603 (1023)
T 4hat_C 526 QYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA-D-LQP 603 (1023)
T ss_dssp TCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT-T-SCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH-h-CCH
Confidence 4444443 22 356778888899999999999999999999776443 4677765544444333 2 456
Q ss_pred HhHHHHHHHHHHHHHhCccc--cccchHHHHHHHHHHhhccC-----CCC--CC---hhHHHHHHHHHHHHHHhcccchh
Q 000196 657 KCREESAKLLGCLIRNCERL--IRPYIAPIHKALVARLLEGT-----GIN--AN---NGIISGVLVTVGDLARVGGFGMR 724 (1874)
Q Consensus 657 ~~r~~a~~~L~~l~~~~~~~--~~py~~~il~~ll~~l~~~~-----~~~--~~---~~v~~~~~~~l~~La~~~g~~~~ 724 (1874)
..+....++++.++++.+.. ...|+..+++.+...+..-. .+. .+ ......++.|++.++...|..+.
T Consensus 604 ~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~ 683 (1023)
T 4hat_C 604 QQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFY 683 (1023)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHH
Confidence 77788999999999987632 44567767766665544210 000 01 12345678888899999999999
Q ss_pred hcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cc
Q 000196 725 QYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIM-GA 803 (1874)
Q Consensus 725 ~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l-ga 803 (1874)
|++..++|.+++..+--+ ..+...+...|..+. +.| .+.. + ..+|+++++.+... +.
T Consensus 684 ~~~~~i~~~~l~~y~~~s---------~~i~~~~~~~g~~~~---~~~-~~r~----~-----r~ik~~il~l~~~~i~~ 741 (1023)
T 4hat_C 684 PQLGHIYYNMLQLYRAVS---------SMISAQVAAEGLIAT---KTP-KVRG----L-----RTIKKEILKLVETYISK 741 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHCGGGG---GSH-HHHH----H-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHhCCchhh---ccH-HHHH----H-----HHHHHHHHHHHHHHHhc
Confidence 999999999887765321 122222333343221 112 2221 1 24777788877552 10
Q ss_pred cCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHH
Q 000196 804 LDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLM 883 (1874)
Q Consensus 804 ldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~ 883 (1874)
.+ +.... ...+. .-++..++.--.+......+..+.....
T Consensus 742 ~~-----------------------------~~~~~----------~~~~~-~~l~~~vl~dY~~~~~~~r~~~vL~l~s 781 (1023)
T 4hat_C 742 AR-----------------------------NLDDV----------VKVLV-EPLLNAVLEDYMNNVPDARDAEVLNCMT 781 (1023)
T ss_dssp CS-----------------------------CHHHH----------HHHTH-HHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred CC-----------------------------CHHHH----------HHHhH-HHHHHHHHHHHHhCChhhccHHHHHHHH
Confidence 00 00000 00011 1122222222222222233467888888
Q ss_pred HHHHHhCCCCCCCccchhHHHH----HHHhc---CCcchhHHHHHHHHHHHHHHHHhHHH----hHHHHHHHHHHhhcCC
Q 000196 884 FIFKSMGLGCVPYLPKVLPDLF----HTVRT---CDDYLKDYITWKLGTLVSIVRQHIRK----YLQELFSLISELWSSF 952 (1874)
Q Consensus 884 ~i~~~~~~~~~~~l~~ilp~ll----~~l~~---~~~~~~~~~~~~l~~lv~~~~~~i~~----y~~~i~~~i~~~~~~~ 952 (1874)
.|+..+|..+.|.++.++..+. ..+.+ ..|+.|..+|..+..++...-..+-. .+..+++.+.-..+..
T Consensus 782 ~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~ 861 (1023)
T 4hat_C 782 TVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN 861 (1023)
T ss_dssp HHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 8999999887777777777664 34543 34678999998888877655333322 3344444443333322
Q ss_pred CCCcccccccchhHHHHHHHHHHH-----hhhhhhccchhhHHHHHHhccccc
Q 000196 953 SLPATNRTYRGLPVLHLVQQLCLA-----LNDEFRTHLPVILPCCIQVLSDAE 1000 (1874)
Q Consensus 953 ~~~~~~~~~~~~~~l~~i~~l~~~-----l~~~f~~yl~~llp~ll~~l~~~~ 1000 (1874)
. .+.....+. .+..++..+... ...-++.|.-.++..++.++.+..
T Consensus 862 ~-r~~~~~~l~-~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 862 N-RDVEVNGLQ-IALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD 912 (1023)
T ss_dssp C-HHHHHHHHH-HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred c-hHHHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 1 110000011 223334444332 122345788888888888887644
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.27 E-value=5.5e-11 Score=154.44 Aligned_cols=356 Identities=12% Similarity=0.101 Sum_probs=235.1
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhcCC-ChhHHHHHHHhc
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADA-DVTVRHSIFSSL 585 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~-~~~vR~~~l~~l 585 (1874)
...+.++++.+|..|+.++.+++...... ....++ ..+++.|+.. +.++ ++.+|..++.+|
T Consensus 93 v~~L~s~~~~~~~~A~~~L~~ll~~~~~~----------------~~~~~~~~g~i~~Lv~~-L~~~~~~~v~~~A~~~L 155 (530)
T 1wa5_B 93 TQQLNSDDMQEQLSATVKFRQILSREHRP----------------PIDVVIQAGVVPRLVEF-MRENQPEMLQLEAAWAL 155 (530)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHTCCSSSC----------------SHHHHHHTTCHHHHHHT-TSTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCCCc----------------cHHHHHHCCCHHHHHHH-hCCCCCHHHHHHHHHHH
Confidence 34567778999999999999887532100 011111 2455666654 4555 899999888887
Q ss_pred cCCCC----cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 586 YGNRG----FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 586 ~~~~~----f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
..-.. ....+.....++.|+.++.+++.+||..|+.+|+.++...|..-...+..-.+..+..+..+ .+...+..
T Consensus 156 ~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~ 234 (530)
T 1wa5_B 156 TNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRT 234 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHH
T ss_pred HHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHH
Confidence 52011 11122234568888899999999999999999999998764321111111112223333334 56788999
Q ss_pred HHHHHHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH-hHHHHHHHHHh
Q 000196 662 SAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS-ELMPLIVEALL 739 (1874)
Q Consensus 662 a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~-~llp~l~~~l~ 739 (1874)
|+++|+.++... +..-......+++.|+..+.+. ++.++..++.+|+.++...++.....+. .++|.++..|.
T Consensus 235 a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-----d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 235 ATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-----DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-----CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 999999999765 3333334556778888888764 6889999999999998654433333333 67899999998
Q ss_pred cCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCc
Q 000196 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1874)
Q Consensus 740 d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~ 819 (1874)
+. +..+|..|+.+|+.++...+....... -..+++.|+.+|+++ ++.+|.+++.+|+.++.-.+...+.
T Consensus 310 ~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~-------- 378 (530)
T 1wa5_B 310 HE-STLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQA-------- 378 (530)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHH--------
T ss_pred CC-ChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHH--------
Confidence 75 678999999999999865433211111 135888999999765 7899999999999987432211000
Q ss_pred ccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCC--CCCCCc
Q 000196 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL--GCVPYL 897 (1874)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~--~~~~~l 897 (1874)
+...-+++.|+..|.+++. .....++.++.++....+. ....++
T Consensus 379 ---------------------------------~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~~~l 424 (530)
T 1wa5_B 379 ---------------------------------VIDANLIPPLVKLLEVAEY-KTKKEACWAISNASSGGLQRPDIIRYL 424 (530)
T ss_dssp ---------------------------------HHHTTCHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred ---------------------------------HHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 0011235567777766543 4566788888888876433 222233
Q ss_pred --cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000196 898 --PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1874)
Q Consensus 898 --~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1874)
..++|.++..+...++.++..++..|..++....
T Consensus 425 ~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 3489999999988888889999888888876554
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.27 E-value=2e-08 Score=131.30 Aligned_cols=360 Identities=12% Similarity=0.053 Sum_probs=219.2
Q ss_pred HHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCC--ChhHHHHHH
Q 000196 505 DSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA--DVTVRHSIF 582 (1874)
Q Consensus 505 ~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~--~~~vR~~~l 582 (1874)
..+..++.+.++.+|.-|+.++|++-...........+ ....+..+++.|.... .++ |+++|..++
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~-----------~~g~i~~Lv~~l~~lL-~~~~~d~~v~~~Av 400 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF-----------GDGAALKLAEACRRFL-IKPGKDKDIRRWAA 400 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS-----------TTTHHHHHHHHHHHHH-HCSSCCSSHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch-----------hhccHHHHHHHHHHHh-cCCCCCHHHHHHHH
Confidence 34445666777899999999999985311000000000 1112444455554433 344 888999888
Q ss_pred HhccC---CCCcchhh-ccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCc-c-----------------------
Q 000196 583 SSLYG---NRGFDDFL-AQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAY-V----------------------- 634 (1874)
Q Consensus 583 ~~l~~---~~~f~~~L-~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~-v----------------------- 634 (1874)
.+|.. ....-..+ .....++.|+..+..++..++..|..+|+.++...+.. .
T Consensus 401 eaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~ 480 (810)
T 3now_A 401 DGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDD 480 (810)
T ss_dssp HHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHH
T ss_pred HHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccccc
Confidence 88741 11100112 12457888999998888999999999999999854210 0
Q ss_pred chHHH---HH-----HHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchH--HHHHHHHHHhhccCCCCCChhH
Q 000196 635 LPALR---RH-----LIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA--PIHKALVARLLEGTGINANNGI 704 (1874)
Q Consensus 635 ~p~l~---~~-----l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~--~il~~ll~~l~~~~~~~~~~~v 704 (1874)
....+ +. .+..|..+..+ +++..+++|+++|+.++.. ++ .+..+- ..++.|++.+++. .+..
T Consensus 481 ~~~v~~r~~~VveaGaVp~LV~LL~s-~s~~vqe~Aa~aL~NLA~d-~~-~r~~Vv~~Gaip~Lv~LL~s~-----~~~~ 552 (810)
T 3now_A 481 VDFINKRITVLANEGITTALCALAKT-ESHNSQELIARVLNAVCGL-KE-LRGKVVQEGGVKALLRMALEG-----TEKG 552 (810)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTC-CCHHHHHHHHHHHHHHHTS-HH-HHHHHHHTTHHHHHHHHHHSS-----CHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HH-HHHHHHHCCCHHHHHHHHccC-----CHHH
Confidence 00111 11 12334444455 6789999999999999853 22 222221 3677788888764 5677
Q ss_pred HHHHHHHHHHHHHhcccch--hh-cHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 000196 705 ISGVLVTVGDLARVGGFGM--RQ-YISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1874)
Q Consensus 705 ~~~~~~~l~~La~~~g~~~--~~-~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1874)
+..++.+|+.++....+.. .. .....+|.++..|....+...+..|+.+|+.++........-... ...++.|..+
T Consensus 553 k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~L 631 (810)
T 3now_A 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYY 631 (810)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHH
Confidence 8889999999886543322 11 234578899988864333345567999999998764211000000 1346667777
Q ss_pred hcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHH
Q 000196 782 LNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINS 861 (1874)
Q Consensus 782 l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~ 861 (1874)
+.++ ++.++++|+++++.+..-+....+ . .. ..-+++.
T Consensus 632 L~s~-~~~Vq~~A~~~L~NLa~~~~~~~~-~---------------------------v~-------------~~g~l~~ 669 (810)
T 3now_A 632 LMED-HLYLTRAAAQCLCNLVMSEDVIKM-F---------------------------EG-------------NNDRVKF 669 (810)
T ss_dssp HHSC-CTTHHHHHHHHHHHHTTSHHHHHH-H---------------------------HS-------------SSSHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChHHHHH-H---------------------------Hh-------------ccCcHHH
Confidence 7654 678999999999988542211100 0 00 0124667
Q ss_pred HHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc--cchhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 000196 862 LMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL--PKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928 (1874)
Q Consensus 862 Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l--~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~ 928 (1874)
|+..++.++. .....++.|+.++.......+...+ ...+|.++..+++.+..++..+.+.++.++.
T Consensus 670 Lv~LL~s~d~-~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 670 LALLCEDEDE-ETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHGGGCSSH-HHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCH-HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 8888876543 4566778888888762111111112 4688999999999888899988888877764
No 36
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.26 E-value=1.8e-10 Score=149.73 Aligned_cols=360 Identities=12% Similarity=0.055 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCCC-hhhhhhHHHHHhHhhcc
Q 000196 23 LDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESND-AAENLGALRAIDELIDV 99 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~~-~~~r~~~i~ai~~li~~ 99 (1874)
.+.+..+++.|.+.+.+.+ .|+..|+.++.. +- .+...... ..+.+.+.+++++++ ...|..|+.++..+...
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~---~~-~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSI---ER-SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTC---SS-SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC---CC-CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 3458899999988764444 477777776521 11 11111111 234666777887776 88899999999999764
Q ss_pred ccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHH
Q 000196 100 ALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLI 176 (1874)
Q Consensus 100 ~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~ 176 (1874)
.. +....+. ...+.|..++. +.+.+++..|+++|+.|+..+......+++ ..++.++..|..+.+...|..|+.+
T Consensus 149 ~~-~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~ 226 (528)
T 4b8j_A 149 TS-ENTKVVIDHGAVPIFVKLLG-SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWT 226 (528)
T ss_dssp CH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHH
T ss_pred CH-HHHHHHHhCCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHH
Confidence 21 1111111 24566777775 468999999999999998642111111221 2466777777656667888999999
Q ss_pred HHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHhhccCCCChh
Q 000196 177 LKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVH 255 (1874)
Q Consensus 177 l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~i~~~~~~~l~~~~~~~ 255 (1874)
|..++.+.|..-...+..+++.+...|.++++.||..|+.+|+.+... ........ -..+++.+...+.+++ ..
T Consensus 227 L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~g~v~~Lv~lL~~~~-~~ 301 (528)
T 4b8j_A 227 LSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG----TNDKIQAVIEAGVCPRLVELLLHPS-PS 301 (528)
T ss_dssp HHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS----CHHHHHHHHHTTCHHHHHHHTTCSC-HH
T ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCHHHHHHHHHcCCC-hh
Confidence 999999877655566788999999999999999999999999876532 11111111 1246677777777764 68
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcc-hhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc
Q 000196 256 SIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHR-DRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR 333 (1874)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~-~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~ 333 (1874)
++..|+.+|+.+.....+.....+ ..+++.++..+.+. ++.||+.++.+|+.++...+.....-+-..+++.|...|.
T Consensus 302 v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~ 381 (528)
T 4b8j_A 302 VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ 381 (528)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh
Confidence 899999999998875443332222 23567777788888 9999999999999999755543222122367788888886
Q ss_pred CCC--CcchHHHHHHHHHhhchhhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 334 IPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 334 ~~~--~R~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
... .|..|+.+|++++.........++ ..+++.+...+...+.+....++.+++.|+...
T Consensus 382 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 382 TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 543 478999999999877444444554 356777888886654444456788888887654
No 37
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.26 E-value=5.1e-11 Score=137.05 Aligned_cols=195 Identities=15% Similarity=0.165 Sum_probs=147.2
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHH
Q 000196 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ 153 (1874)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~ 153 (1874)
+.+.+++++|.+|.+|+.++..++....+.......++.+.|...+..+.+..|+..|+.+++.
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~---------------- 83 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLAL---------------- 83 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH----------------
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH----------------
Confidence 4566789999999999999999988732211122344555555555212345555555555554
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhH
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWR 233 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~ 233 (1874)
++.+.+..|.+|+..++|.|+..++|+++.||++|..|+..++....
T Consensus 84 --------------------------la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------- 130 (242)
T 2qk2_A 84 --------------------------LAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------- 130 (242)
T ss_dssp --------------------------HHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-------
T ss_pred --------------------------HHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-------
Confidence 44444467899999999999999999999999999999998865321
Q ss_pred HHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch--hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh
Q 000196 234 VQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF 311 (1874)
Q Consensus 234 ~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~ 311 (1874)
+..+++.+..++.+. ++.++..++.+++.++...+ .+..+++..+++.++..++++++.||.++..+++.++..
T Consensus 131 ---~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 131 ---LEAQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp ---HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 456778888888876 48999999999999887543 367889999999999999999999999999999999876
Q ss_pred ChhhHHHHHH
Q 000196 312 LRDRFVTNYL 321 (1874)
Q Consensus 312 ~~~~f~~~yl 321 (1874)
.+.+....|+
T Consensus 207 vg~~~~~~~l 216 (242)
T 2qk2_A 207 MGDKAVTPLL 216 (242)
T ss_dssp HCHHHHGGGG
T ss_pred cCHHHHHHHH
Confidence 6554333343
No 38
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.25 E-value=6.6e-11 Score=153.73 Aligned_cols=357 Identities=15% Similarity=0.123 Sum_probs=236.8
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhH-HHHHHHHHHHHHHhcCCC-hhHHHHHHHhc
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR-LIEELVEKLLIAAVADAD-VTVRHSIFSSL 585 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vl~~Ll~~~~~d~~-~~vR~~~l~~l 585 (1874)
+..+.++++.+|..|+.++++++...... .... .-..+++.|+... .+++ +.+|..++.+|
T Consensus 80 v~~L~s~~~~~~~~A~~~L~~l~s~~~~~----------------~~~~~~~~g~v~~Lv~lL-~~~~~~~v~~~A~~~L 142 (528)
T 4b8j_A 80 IGGVYSDDNNLQLEATTQFRKLLSIERSP----------------PIEEVIQSGVVPRFVQFL-TREDFPQLQFEAAWAL 142 (528)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTCSSSC----------------CHHHHHHTTCHHHHHHHH-TCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCCCc----------------hHHHHHHCCCHHHHHHHh-CCCCCHHHHHHHHHHH
Confidence 45567778999999999999887532100 0111 1224566666654 4454 99999888877
Q ss_pred cC---C-CCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHH
Q 000196 586 YG---N-RGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCRE 660 (1874)
Q Consensus 586 ~~---~-~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~ 660 (1874)
+. . ......+.....++.|+..+.+++.+||..|+.+|+.++...|..-...+. ..+..++..+..+ .+...+.
T Consensus 143 ~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~ 221 (528)
T 4b8j_A 143 TNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLR 221 (528)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHH
T ss_pred HHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHH
Confidence 41 0 111111222347889999999999999999999999999876532111111 1223344444344 5788899
Q ss_pred HHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHHHHh
Q 000196 661 ESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALL 739 (1874)
Q Consensus 661 ~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~~l~ 739 (1874)
.++++|+.++...+..-......+++.|+..+.+. ++.++..++.+|+.++..........+ ..++|.++..|.
T Consensus 222 ~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 222 NATWTLSNFCRGKPQPSFEQTRPALPALARLIHSN-----DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 99999999997754433344567788888888764 788999999999998754333222222 257899999998
Q ss_pred cCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCc
Q 000196 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1874)
Q Consensus 740 d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~ 819 (1874)
+. +..++..|+.+|+.++............ ..+++.|+.+|+++.++.+|.+|+++|+.+.+-.+.....
T Consensus 297 ~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~-------- 366 (528)
T 4b8j_A 297 HP-SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQA-------- 366 (528)
T ss_dssp CS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHH--------
T ss_pred CC-ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHH--------
Confidence 76 5789999999999998754332211111 4578888998876647899999999999886422211000
Q ss_pred ccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCCCCCc--
Q 000196 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGCVPYL-- 897 (1874)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~~~~l-- 897 (1874)
.+..-+++.|+.+|.+++ ......++.++.++....+.....++
T Consensus 367 ---------------------------------~~~~~~i~~L~~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 367 ---------------------------------VINAGIIGPLVNLLQTAE-FDIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp ---------------------------------HHHTTCHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ---------------------------------HHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 001123566777776653 34566788888888776333334444
Q ss_pred cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 000196 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVR 931 (1874)
Q Consensus 898 ~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~ 931 (1874)
..+++.++..+...++.++..++..|+.++....
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4688999999988888888888888888876543
No 39
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.22 E-value=4.1e-10 Score=146.15 Aligned_cols=357 Identities=11% Similarity=0.063 Sum_probs=236.3
Q ss_pred HHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhcCC-ChhhhhhHHHHHhHhhccc
Q 000196 24 DALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLESN-DAAENLGALRAIDELIDVA 100 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~s~-~~~~r~~~i~ai~~li~~~ 100 (1874)
..+..+++.|++.+.+.+ .|+..|+.++.. + ......... ..+.+.+.++++++ ++..|..|+.++..+....
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~---~-~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSR---E-HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCC---S-SSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC---C-CCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 347889999988754443 477777766521 1 111111111 23566777888886 8888999999999997642
Q ss_pred cCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHH
Q 000196 101 LGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLIL 177 (1874)
Q Consensus 101 ~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l 177 (1874)
. +....+ ....+.|..++. +.+.+++..|+++|+.|+.........++. ..++.++..+.+ .+...|..|+.+|
T Consensus 163 ~-~~~~~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L 239 (530)
T 1wa5_B 163 S-AQTKVVVDADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTL 239 (530)
T ss_dssp H-HHHHHHHHTTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHH
T ss_pred H-HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHH
Confidence 1 111111 122455666664 458999999999999998742111111111 246666666765 5556788899999
Q ss_pred HHHHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHhhccCCCChh
Q 000196 178 KEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVH 255 (1874)
Q Consensus 178 ~~la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~ 255 (1874)
..|+.+. |..-......+++.++..|.++++.||..|+.+|+.+... ......... ..+++.+...+.++ ++.
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~----~~~~~~~~~~~~~v~~Lv~lL~~~-~~~ 314 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG----PQEAIQAVIDVRIPKRLVELLSHE-STL 314 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS----CHHHHHHHHHTTCHHHHHHGGGCS-CHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC----CHHHHHHHHhcCcHHHHHHHHCCC-Chh
Confidence 9999876 6554556778899999999999999999999999887532 111111222 24667777777765 478
Q ss_pred HHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhc
Q 000196 256 SIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLR 333 (1874)
Q Consensus 256 ~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~ 333 (1874)
++..++.+|+.+....++.....++ .+++.++..+.+.++.||..++.+|+.++...+... ..++ ..+++.|...|.
T Consensus 315 v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~-~~~~~~~~l~~L~~lL~ 393 (530)
T 1wa5_B 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQI-QAVIDANLIPPLVKLLE 393 (530)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHh
Confidence 8999999999988654433322222 467788888899999999999999999998665432 2233 357777777776
Q ss_pred CCC--CcchHHHHHHHHHhhchh--hhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHh
Q 000196 334 IPA--ERDSGFIALGEMAGALDG--ELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARAM 393 (1874)
Q Consensus 334 ~~~--~R~~a~~alg~la~~v~~--~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~ 393 (1874)
... .|..|+.+|+.++...+. +...++ ..+++.+...+...+.+.+..++.++..++...
T Consensus 394 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 394 VAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 443 478999999999876443 333333 236677777775544333456777887777653
No 40
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.18 E-value=1.7e-07 Score=122.25 Aligned_cols=456 Identities=13% Similarity=0.094 Sum_probs=275.3
Q ss_pred HHHHHHHHHHcCCCC---chhhHHHHHHHHHHHHHh-h--hChHHHHHHHHHHH-------------HHHHhhhcCCChh
Q 000196 24 DALNRILADLCTHGN---PKEGASLALRKHIEEQAR-D--LGGEAFSRFMDQLY-------------DRISGLLESNDAA 84 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~---~~~~aa~~l~~~v~~~~~-~--~~~~~~~~~~~~l~-------------~~i~~l~~s~~~~ 84 (1874)
.-+..++++++.... +++.-..|+.++=... + + .++..-.+.+..+. -.+.+++.+++..
T Consensus 11 ~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~-~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~ 89 (621)
T 2vgl_A 11 RGLAVFISDIRNCKSKEAEIKRINKELANIRSKF-KGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYT 89 (621)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH-HSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHH
Confidence 458889999975432 2333555655543322 3 2 23332222322221 3345788899999
Q ss_pred hhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc-C
Q 000196 85 ENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-G 163 (1874)
Q Consensus 85 ~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-~ 163 (1874)
.|..|-+++..+.... +..+.-..|.+++=+. +.++-++..|..+++.+.. +++++..++.+...|. .
T Consensus 90 ~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~-~~n~~ir~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~ 158 (621)
T 2vgl_A 90 EKQIGYLFISVLVNSN----SELIRLINNAIKNDLA-SRNPTFMGLALHCIANVGS------REMAEAFAGEIPKILVAG 158 (621)
T ss_dssp HHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCS
T ss_pred HHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhhccCC------HHHHHHHHHHHHHHHhCC
Confidence 9999999999987553 2233444566666664 5678999999999999843 5677777777777763 4
Q ss_pred CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhh-----------
Q 000196 164 DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRW----------- 232 (1874)
Q Consensus 164 ~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~----------- 232 (1874)
+.+...|..|+.++..+....|+.+.+ +.+++.+...|.|+++.|+.+|..++..+...-.......
T Consensus 159 d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~l 236 (621)
T 2vgl_A 159 DTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRI 236 (621)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 567788888899999999988887653 4667777788999999999999998877643210000000
Q ss_pred ----------------HHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcc--------------h----------
Q 000196 233 ----------------RVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNT--------------G---------- 272 (1874)
Q Consensus 233 ----------------~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~--------------~---------- 272 (1874)
...|.+..+=.+...+...++.+.+..-...+..++... +
T Consensus 237 l~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~ 316 (621)
T 2vgl_A 237 VTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISL 316 (621)
T ss_dssp HHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHH
Confidence 023443333233333332212222221111222222100 0
Q ss_pred ----hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhc-CCC--CcchHHHHH
Q 000196 273 ----EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLR-IPA--ERDSGFIAL 345 (1874)
Q Consensus 273 ----~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~-~~~--~R~~a~~al 345 (1874)
.-..+.....+..+..++.++++.+|..++..+..++...+. ..++......++.+|+ +++ .|..|++.+
T Consensus 317 i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL 393 (621)
T 2vgl_A 317 IIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS---HEAVKTHIETVINALKTERDVSVRQRAVDLL 393 (621)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhccCCCHhHHHHHHHHH
Confidence 001123344555666667788899999999999998876542 0123344555666776 333 245666666
Q ss_pred HHHHhhchhhhhhhhHHHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHhcC--CCHHHHHHHHH
Q 000196 346 GEMAGALDGELFHYLPTITSHLREAIAPRRGKPSLEALACVGNIARAMGPVMEPHVRGLLDIMFSAG--LSTTLVDALEQ 423 (1874)
Q Consensus 346 g~la~~v~~~~~p~l~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~~~~p~l~~ll~~ll~~~--ls~~l~~~l~~ 423 (1874)
..++.. + -++.|+..+.+.+...+...+..+...++.++..+.+++.-|++.+++.+-..| ..++....+..
T Consensus 394 ~~l~~~--~----Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ 467 (621)
T 2vgl_A 394 YAMCDR--S----NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQ 467 (621)
T ss_dssp HHHCCH--H----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHH
T ss_pred HHHcCh--h----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 555422 1 345666666666644332223578899999999999899999998888776544 56666677777
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhccccc----CCCc-
Q 000196 424 ITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNF----KGHD- 498 (1874)
Q Consensus 424 i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f----~~~~- 498 (1874)
+....|.++......+++.+. . + +. ....+..|+..+|+|.. .++.
T Consensus 468 ii~~~~~~~~~~~~~l~~~l~----~-~-----------------------~~-~~~li~~~~wilGEy~~~~~~~~~~~ 518 (621)
T 2vgl_A 468 IVINRDDVQGYAAKTVFEALQ----A-P-----------------------AC-HENLVKVGGYILGEFGNLIAGDPRSS 518 (621)
T ss_dssp HHGGGCSCHHHHHHHHHHHHT----S-S-----------------------SC-CHHHHHHHHHHHHHHTHHHHSSTTSC
T ss_pred HHhCChhHHHHHHHHHHHHHc----C-c-----------------------cc-hHHHHHHHHHHhcchHHHhcccCCCC
Confidence 887888888877777766543 0 0 00 11234567799999831 1111
Q ss_pred chhhHHHHHhhhccCCChHHHHHHHHHhHHhhhc
Q 000196 499 LLEFARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1874)
Q Consensus 499 l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1874)
-.++++. +...+...++.||..+..++.+++..
T Consensus 519 p~~~l~~-l~~~~~~~~~~v~~~~Lta~~Kl~~~ 551 (621)
T 2vgl_A 519 PLIQFNL-LHSKFHLCSVPTRALLLSTYIKFVNL 551 (621)
T ss_dssp HHHHHHH-HHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 0123332 33334456789998888888888754
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.15 E-value=4.7e-09 Score=141.47 Aligned_cols=489 Identities=14% Similarity=0.084 Sum_probs=277.1
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH--HHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL--IEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
..++.++++.||..|+.+++.+...... .... ...+++.|+.....+.++++|..++.+|
T Consensus 156 v~lL~~~d~~vr~~A~~~L~~L~~~~~~------------------~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL 217 (780)
T 2z6g_A 156 TKLLNDEDQVVVNKAAVMVHQLSKKEAS------------------RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217 (780)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTSHHH------------------HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhCCChh------------------HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3556678899999999998887642110 0111 1346666666655667899999888877
Q ss_pred cC---CCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHH
Q 000196 586 YG---NRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREES 662 (1874)
Q Consensus 586 ~~---~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a 662 (1874)
.. .......+.....++.|+..+++++..+|..|+.+|+.|+...+..-......-.+..+..+..+ ++.+.++.+
T Consensus 218 ~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a 296 (780)
T 2z6g_A 218 HNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAIT 296 (780)
T ss_dssp HHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHH
T ss_pred HHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHHHH
Confidence 41 00000111223468889999999999999999999999998765421111111122233333334 467778888
Q ss_pred HHHHHHHHHhCccccccch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHh
Q 000196 663 AKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALL 739 (1874)
Q Consensus 663 ~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~ 739 (1874)
+.+|..++....+.-.... ...++.|+..+++. ........++.++..|+.. . ...+.+ ...+|.++..+.
T Consensus 297 ~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~-~-~~~~~i~~~g~l~~Ll~lL~ 370 (780)
T 2z6g_A 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSVC-S-SNKPAIVEAGGMQALGLHLT 370 (780)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS-T-THHHHHHHTTHHHHHGGGTT
T ss_pred HHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHHHhhcC-h-HHHHHHHHhchHHHHHHHHc
Confidence 8888877743322111101 13456677777754 1344455666677777642 2 122222 246788888888
Q ss_pred cCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCc
Q 000196 740 DGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSH 819 (1874)
Q Consensus 740 d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~ 819 (1874)
+. +...+..|+++|..++...... .....+++.|+.+|+++ ++.+|..++.+|+.++.-.+......
T Consensus 371 ~~-~~~~~~~a~~~L~~L~~~~~~~----~~~~~~i~~Lv~lL~~~-d~~vr~~A~~aL~~L~~~~~~~~~~i------- 437 (780)
T 2z6g_A 371 DP-SQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMV------- 437 (780)
T ss_dssp CS-CHHHHHHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHH-------
T ss_pred CC-chHHHHHHHHHHHHHhccchhh----hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHH-------
Confidence 76 5678888999999998765431 23467899999999754 78999999999998864222110000
Q ss_pred ccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCc-hhhHHHHHHHHHHHHHHhCCC--C--C
Q 000196 820 GEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG--C--V 894 (1874)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~-~~~~~~v~~al~~i~~~~~~~--~--~ 894 (1874)
...-.++.|+..|.+++. ......++.++.+|....+.. . .
T Consensus 438 ----------------------------------~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~ 483 (780)
T 2z6g_A 438 ----------------------------------CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNA 483 (780)
T ss_dssp ----------------------------------HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHH
T ss_pred ----------------------------------HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 001245667777765322 234455666666553211000 0 0
Q ss_pred CCccchhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHHH--hHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHHH
Q 000196 895 PYLPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVRQ--HIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLHL 969 (1874)
Q Consensus 895 ~~l~~ilp~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~~--~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 969 (1874)
-.-...+|.++..++..+. .++..++..|+.+...-.. .+. ..++.++.++.....
T Consensus 484 v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~------------------- 544 (780)
T 2z6g_A 484 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ------------------- 544 (780)
T ss_dssp HHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHH-------------------
T ss_pred HHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcch-------------------
Confidence 0013458888888887765 7888888888777632111 111 112222222221100
Q ss_pred HHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhh--hhhHHHHHHhhcCCCcHHH
Q 000196 970 VQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHM--HLLLPALIRLFKVDAPVDI 1045 (1874)
Q Consensus 970 i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~--~~ilp~l~~~~~~~~~~~v 1045 (1874)
+.+.....-+.. +.+.+.. ....+...+..++..+...-. ..+ .-.+|.++.++... ...+
T Consensus 545 ----------~~~~~aa~al~n--q~~~~~~--~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v 609 (780)
T 2z6g_A 545 ----------DTQRRTSMGGTQ--QQFVEGV--RMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP-IENI 609 (780)
T ss_dssp ----------HHHHTTC--------CCSTTC--CHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS-CHHH
T ss_pred ----------hHHHHHhhcccc--chhhccc--ChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC-CHHH
Confidence 000000000000 0010000 001122233444444332110 001 23689999999764 6789
Q ss_pred HHHHHHHHHhhcccccccchhH--hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000196 1046 RRAAIETLTRLIPRVQVTGHIS--SLVHHLKLVLDGKNDELRKDAVDALCCLAHALGED 1102 (1874)
Q Consensus 1046 r~~ai~~l~~l~~~~~~~~~~~--~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~ 1102 (1874)
+..|+.+|+.++........+. ..+..|...+.++++++|..|..+|+.++..-...
T Consensus 610 ~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~ 668 (780)
T 2z6g_A 610 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668 (780)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHh
Confidence 9999999999875422222222 25677889999999999999999999998765433
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.14 E-value=5.7e-09 Score=138.58 Aligned_cols=486 Identities=13% Similarity=0.052 Sum_probs=265.0
Q ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000196 195 FVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1874)
Q Consensus 195 il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1874)
.++.+...|+++++.||+.|+.+|+.+...-. .+.... ..+++.+...|.+..+.+++..|+.+|..|.....
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-----~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-----SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-----HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-----hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 46667778889999999999999998764321 121221 25667777777654456788888888887654321
Q ss_pred hhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCCC--cchHHHHHHH
Q 000196 273 EFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPAE--RDSGFIALGE 347 (1874)
Q Consensus 273 ~~~~~~~~--~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~~--R~~a~~alg~ 347 (1874)
....+. ..++.++.++++.++.+|..++.+|..++........ .+. ...++.|...|++... +..+..+|+.
T Consensus 90 --~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~-~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 90 --GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp --HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH-HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred --hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH-HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 111111 3567788888899999999999999999976543221 122 5688999999987653 5567788988
Q ss_pred HHhhchhhhhhhh-HHHHHHHHHhhcCCCCC-CCchhHHHHHHHHHHhCCCchHHHH--HHHHHHHhcCCCHHHHHHHHH
Q 000196 348 MAGALDGELFHYL-PTITSHLREAIAPRRGK-PSLEALACVGNIARAMGPVMEPHVR--GLLDIMFSAGLSTTLVDALEQ 423 (1874)
Q Consensus 348 la~~v~~~~~p~l-~~i~~~l~~~L~~~~~~-~~~~a~~~l~~l~~~~g~~~~p~l~--~ll~~ll~~~ls~~l~~~l~~ 423 (1874)
++...++.-.... ...++.+...+.+.... ....+..++..++. .+.....+- ..++.|+..-
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll----------- 233 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHL----------- 233 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTT-----------
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHH-----------
Confidence 8864333211111 23455555555433211 11234455555442 222222221 1222222110
Q ss_pred HHHhCCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHHHHHhhcccccCC---Ccch
Q 000196 424 ITVSIPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQLALQTLARFNFKG---HDLL 500 (1874)
Q Consensus 424 i~~~~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~---~~l~ 500 (1874)
..- +......|+.+|+.+...+ ....
T Consensus 234 -----~~~----------------------------------------------~~~~~~~a~~~L~nL~~~~~~~~~~~ 262 (644)
T 2z6h_A 234 -----TDP----------------------------------------------SQRLVQNCLWTLRNLSDAATKQEGME 262 (644)
T ss_dssp -----TCS----------------------------------------------CHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred -----hcC----------------------------------------------CHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 000 0111222333333221100 0011
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhcCCC-hhHH
Q 000196 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADAD-VTVR 578 (1874)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~-~~vR 578 (1874)
. +-..+..++.++++++|..|+.+++.+...... ....++ ...++.|+......++ +.+|
T Consensus 263 ~-~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~-----------------~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 263 G-LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK-----------------NKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp H-HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-----------------HHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred h-HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-----------------HHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 1 223345667788899999999888887542110 000111 1245555555444333 7898
Q ss_pred HHHHHhccC---CCCcchh----hccHhhHHHHHHHhCCCC-HHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHH
Q 000196 579 HSIFSSLYG---NRGFDDF----LAQADCLSAIFAALNDED-FDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYL 649 (1874)
Q Consensus 579 ~~~l~~l~~---~~~f~~~----L~~~~~l~~L~~~l~D~~-~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l 649 (1874)
..++.+|.. ...-+.. +.....++.|...+.+++ ..+|..|+.+|+.++...... ..... ..+..++..+
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL 403 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLL 403 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHH
Confidence 888777741 1010000 112346788888888775 799999999999998754321 11111 1122222222
Q ss_pred hhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--
Q 000196 650 EQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-- 727 (1874)
Q Consensus 650 ~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-- 727 (1874)
.. .+...|.+|++.++.-. +.+. .....+...++.++..|+... .....+
T Consensus 404 ~~--~~~~vr~~a~~al~n~~---------------------~~~~---~~~~~v~~~a~~aL~~La~~~--~~~~~l~~ 455 (644)
T 2z6h_A 404 VR--AHQDTQRRTSMGGTQQQ---------------------FVEG---VRMEEIVEGCTGALHILARDV--HNRIVIRG 455 (644)
T ss_dssp HH--HHHHHTTC-------------------------------CCS---SCHHHHHHHHHHHHHHHTTSH--HHHHHHHH
T ss_pred hc--cchhhhhHhhhccccch---------------------hccc---ccHHHHHHHHHHHHHHHhcCH--HHHHHHHh
Confidence 22 24455666666554310 0000 013456666777777666432 122222
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
...+|.+++.|.+. +...+..|+.+|+.++...... ........++.|..+++++ ++.+|..+..+|+.++.
T Consensus 456 ~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~l~~~~~~~--~~i~~~g~l~~L~~ll~~~-~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 456 LNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKEAA--EAIEAEGATAPLTELLHSR-NEGVATYAAAVLFRMSE 527 (644)
T ss_dssp TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSHHHH--HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCHHHH--HHHHHcCChhHHHHHHcCC-CHHHHHHHHHHHHHHhc
Confidence 24688999999876 5678999999999887531111 0001123456677777654 78999999999999864
No 43
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.13 E-value=1.4e-07 Score=127.97 Aligned_cols=373 Identities=11% Similarity=0.153 Sum_probs=217.7
Q ss_pred cccchHHHHHHHHHHhhccCCC----C----------CChh---HHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHh
Q 000196 677 IRPYIAPIHKALVARLLEGTGI----N----------ANNG---IISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL 739 (1874)
Q Consensus 677 ~~py~~~il~~ll~~l~~~~~~----~----------~~~~---v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~ 739 (1874)
+.|++..+...++.++..+.+. + .+.+ +....-.++..++..++... +..+++.+.+.+.
T Consensus 411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~---~~i~~~~l~~~~~ 487 (1073)
T 3gjx_A 411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDT---EIIMTKKLQNQVN 487 (1073)
T ss_dssp THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHHhc
Confidence 5566777777777777644210 0 1111 11122345555554433222 2334444444333
Q ss_pred c-CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCC--CHH--HHHHHHHHHHHhcccCccchhhhcc
Q 000196 740 D-GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGEL--VWS--TRREVLKVLGIMGALDPHAHKRNQQ 814 (1874)
Q Consensus 740 d-~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~--~~~--vr~~al~~lg~lgaldp~~~~~~~~ 814 (1874)
. .-++..++++++++|.++........ ....|++++.|+++..... +.+ ++..++.++|... .+. .
T Consensus 488 ~~~~sW~~lea~~~aigaIag~~~~~~E-~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~---~wl---~-- 558 (1073)
T 3gjx_A 488 GTEWSWKNLNTLCWAIGSISGAMHEEDE-KRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP---RFL---R-- 558 (1073)
T ss_dssp SCCCCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH---HHH---H--
T ss_pred CCCCCHHHHhHHHHHHHHHHCcCCcccc-cchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH---HHH---H--
Confidence 2 23588999999999999743321100 0135889999988874332 122 3333445555521 110 0
Q ss_pred cCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCCCC-
Q 000196 815 LSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGLGC- 893 (1874)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~~~- 893 (1874)
...+ |...+++.|+..+.|.. ..+..+++.|+..|...++..+
T Consensus 559 ----------------------------------~h~~-~L~~vl~~L~~~m~~~~-~~vq~aA~~af~~i~~~C~~~lv 602 (1073)
T 3gjx_A 559 ----------------------------------AHWK-FLKTVVNKLFEFMHETH-DGVQDMACDTFIKIAQKCRRHFV 602 (1073)
T ss_dssp ----------------------------------HCHH-HHHHHHHHHHHHTTCCS-TTHHHHHHHHHHHHHHHTGGGGT
T ss_pred ----------------------------------hCHH-HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 0011 34677888888887654 3466789999999999887654
Q ss_pred -------CCCccchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh--HHHhHHHHHHHHHHhhcCCCC-----Cccc-
Q 000196 894 -------VPYLPKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQH--IRKYLQELFSLISELWSSFSL-----PATN- 958 (1874)
Q Consensus 894 -------~~~l~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~--i~~y~~~i~~~i~~~~~~~~~-----~~~~- 958 (1874)
.||+++++..+-.....-.+.....++.++|.++...+.. ...++..+++...+.|+.... ++-.
T Consensus 603 ~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~ 682 (1073)
T 3gjx_A 603 QVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILK 682 (1073)
T ss_dssp SCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGG
T ss_pred hccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhcc
Confidence 4678888887777766666667778889999999877643 357788888888777764210 0000
Q ss_pred cc---ccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhhhhhhhHHHHHH
Q 000196 959 RT---YRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDEHMHLLLPALIR 1035 (1874)
Q Consensus 959 ~~---~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~~~~~ilp~l~~ 1035 (1874)
++ .....++++..++|.++|..|.|++..++|.++++-+. ....+-+++..-|...... ++.+
T Consensus 683 d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~--------~s~~i~~~v~~~g~~~~~~------~~~~ 748 (1073)
T 3gjx_A 683 DPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVYKC--------LSENISAAIQANGEMVTKQ------PLIR 748 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCGGGGSS------HHHH
T ss_pred ChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCCchhhcc------HHHH
Confidence 00 12235677777889999999999999999988876532 1111222333333322211 1111
Q ss_pred hhcCCCcHHHHHHHHHHHHhhccc-ccccchhHhHHHHHHHHh----CCCCHHHH-HHHHHHHHHHHHHhccccccchhh
Q 000196 1036 LFKVDAPVDIRRAAIETLTRLIPR-VQVTGHISSLVHHLKLVL----DGKNDELR-KDAVDALCCLAHALGEDFTIFIPS 1109 (1874)
Q Consensus 1036 ~~~~~~~~~vr~~ai~~l~~l~~~-~~~~~~~~~ii~~l~~~l----~~~~~~l~-~~al~~L~~l~~~~g~~f~~~ip~ 1109 (1874)
.+ ..+|+..++.+...+.. .+.......++++|+..+ ....++.| ...+.++..++.++|..+.+.+|.
T Consensus 749 ~~-----r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~ 823 (1073)
T 3gjx_A 749 SM-----RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQ 823 (1073)
T ss_dssp HH-----HHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHH
T ss_pred HH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHH
Confidence 11 23566666666654433 232233344444444332 22234444 557899999999999999999999
Q ss_pred HHHHHHh
Q 000196 1110 IHKLLLK 1116 (1874)
Q Consensus 1110 i~~~l~~ 1116 (1874)
|...+..
T Consensus 824 il~~vf~ 830 (1073)
T 3gjx_A 824 IFDAVFE 830 (1073)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 44
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.13 E-value=6.1e-09 Score=140.38 Aligned_cols=304 Identities=9% Similarity=-0.012 Sum_probs=182.7
Q ss_pred HHHHHHHHHcCCCCchhh-HHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000196 25 ALNRILADLCTHGNPKEG-ASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~~~-aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~ 103 (1874)
.+..+++.|++++.+.++ +++.++ .+.. ..+ -......+.+++++++...|..|+.++..|.....
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~-~~~~-------~~i---~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~-- 182 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLIN-YQDD-------AEL---ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-- 182 (780)
T ss_dssp ----------CCSCHHHHHHHHHHH-HHHH-------HHH---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH--
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHH-hhhH-------HHH---HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh--
Confidence 367899999998776665 444443 2211 111 12234445566778888999999999999865421
Q ss_pred chhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 104 NASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 104 ~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
....+ ....+.|..++....|.++++.|+++|..|+..... ...++. ..++.+++.|+++ +...|..|+.+|..
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~n 260 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHN 260 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 11111 134555555554345899999999999998764211 111221 2566777777644 46788999999999
Q ss_pred HHhhcCccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHhhccCCCChhHH
Q 000196 180 MAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSI 257 (1874)
Q Consensus 180 la~~~p~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~ 257 (1874)
|+.+.+..-.... ..+++.++..|.+++..+|..|+.+|..+.. . ....+.... ...++.+..-+.+.++...+
T Consensus 261 La~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~--~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~ 336 (780)
T 2z6g_A 261 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G--NQESKLIILASGGPQALVNIMRTYTYEKLL 336 (780)
T ss_dssp HHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T--CHHHHHHHHTTTHHHHHHHHHTTCCCHHHH
T ss_pred HhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--C--ChHHHHHHHHcCCHHHHHHHHhcCCHHHHH
Confidence 9988665433332 4688899999999999999999998885432 1 111111111 12344444445554444455
Q ss_pred HHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCC
Q 000196 258 HGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIP 335 (1874)
Q Consensus 258 ~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~ 335 (1874)
..++.++..|..+.. ..+.+ ..++..++..+.+.+..+++.++.++..++...+... ....+++.|...|+..
T Consensus 337 ~~a~~aL~~Ls~~~~--~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~ 411 (780)
T 2z6g_A 337 WTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSD 411 (780)
T ss_dssp HHHHHHHHHHHTSTT--HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhcChH--HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCC
Confidence 566667777664321 11111 1245677777788888899999999999987654321 1256788888888754
Q ss_pred C--CcchHHHHHHHHHhhc
Q 000196 336 A--ERDSGFIALGEMAGAL 352 (1874)
Q Consensus 336 ~--~R~~a~~alg~la~~v 352 (1874)
. .|..|..+|+.++..-
T Consensus 412 d~~vr~~A~~aL~~L~~~~ 430 (780)
T 2z6g_A 412 DINVVTCAAGILSNLTCNN 430 (780)
T ss_dssp CHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHHHHhCC
Confidence 4 4678899999886543
No 45
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.11 E-value=3.7e-08 Score=130.72 Aligned_cols=491 Identities=14% Similarity=0.091 Sum_probs=276.0
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH--HHHHHHHHHHHhcCCChhHHHHHHHh
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIAAVADADVTVRHSIFSS 584 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1874)
+.+++.++++.||..|+.+++.+..... .....+ ..+++.|+.....++++++|..++.+
T Consensus 19 Lv~lL~~~~~~vr~~A~~~L~~La~~~~------------------~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~ 80 (644)
T 2z6h_A 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEA------------------SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 80 (644)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSTT------------------HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHCCCh------------------hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3456778899999999999988864221 011111 24566666665556688999888777
Q ss_pred ccC-CCCcc--hhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 585 LYG-NRGFD--DFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 585 l~~-~~~f~--~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
|.. ....+ ..+.....++.|...+++++..+|..|+.+|+.++...+.........-.++.+..+..+ ++.+.+..
T Consensus 81 L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~~~~~ 159 (644)
T 2z6h_A 81 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAI 159 (644)
T ss_dssp HHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHH
T ss_pred HHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-CCHHHHHH
Confidence 641 01100 112223468889999999999999999999999998754322111111122333333334 45677777
Q ss_pred HHHHHHHHHHhCccccccch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHH
Q 000196 662 SAKLLGCLIRNCERLIRPYI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEAL 738 (1874)
Q Consensus 662 a~~~L~~l~~~~~~~~~py~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l 738 (1874)
++.+|..++...++.-.... ...++.|+..+++. ....+...++.++..++. .......+ ...+|.++..+
T Consensus 160 a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~----~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll 233 (644)
T 2z6h_A 160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHL 233 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC----CCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC----ChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHH
Confidence 78888888854332111111 13466777777764 244566666777777663 22223322 24688888888
Q ss_pred hcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCC
Q 000196 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1874)
Q Consensus 739 ~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~ 818 (1874)
.+. +...+..|+++|+.++...... .....+++.|+.+++++ ++.+|..+..+++.+..-++.....
T Consensus 234 ~~~-~~~~~~~a~~~L~nL~~~~~~~----~~~~~~i~~Lv~lL~~~-d~~v~~~a~~aL~~L~~~~~~~~~~------- 300 (644)
T 2z6h_A 234 TDP-SQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMM------- 300 (644)
T ss_dssp TCS-CHHHHHHHHHHHHHHGGGCTTC----CSCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHH-------
T ss_pred hcC-CHHHHHHHHHHHHHHhhcchhh----hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHH-------
Confidence 875 5778999999999998764331 22357899999999754 7899999999998875322110000
Q ss_pred cccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCc-hhhHHHHHHHHHHHHHHhCCC-CCC-
Q 000196 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG-CVP- 895 (1874)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~-~~~~~~v~~al~~i~~~~~~~-~~~- 895 (1874)
....-+++.|+..|.+.+. ......++.++.++....+.. ...
T Consensus 301 ----------------------------------v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~ 346 (644)
T 2z6h_A 301 ----------------------------------VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 346 (644)
T ss_dssp ----------------------------------HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ----------------------------------HHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 0011245677777765321 344455666666653211100 000
Q ss_pred -C-ccchhHHHHHHHhcCC-cchhHHHHHHHHHHHHHHH--HhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHH
Q 000196 896 -Y-LPKVLPDLFHTVRTCD-DYLKDYITWKLGTLVSIVR--QHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968 (1874)
Q Consensus 896 -~-l~~ilp~ll~~l~~~~-~~~~~~~~~~l~~lv~~~~--~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~ 968 (1874)
. -...+|.++..++..+ +.++..++..++.+...-. +.+. ..++.++.++...-.. ++. .+.-
T Consensus 347 ~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~---------vr~-~a~~ 416 (644)
T 2z6h_A 347 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD---------TQR-RTSM 416 (644)
T ss_dssp HHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH---------HTT-C---
T ss_pred HHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchh---------hhh-Hhhh
Confidence 0 1246788888887664 3677777776666543100 1110 1122222222211000 000 0000
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchh--hhh--hhhHHHHHHhhcCCCcHH
Q 000196 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLD--EHM--HLLLPALIRLFKVDAPVD 1044 (1874)
Q Consensus 969 ~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~--~~~--~~ilp~l~~~~~~~~~~~ 1044 (1874)
+ +... + +.+ ..........+..++..+...-. ..+ .-.+|.+++++... ..+
T Consensus 417 a-------l~n~--~------------~~~--~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~ 472 (644)
T 2z6h_A 417 G-------GTQQ--Q------------FVE--GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IEN 472 (644)
T ss_dssp ----------------------------CC--SSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCS-CHH
T ss_pred c-------cccc--h------------hcc--cccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCC-CHH
Confidence 0 0000 0 000 00011222334444443322111 111 23689999998754 677
Q ss_pred HHHHHHHHHHhhcccccccchh--HhHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000196 1045 IRRAAIETLTRLIPRVQVTGHI--SSLVHHLKLVLDGKNDELRKDAVDALCCLAHALGEDF 1103 (1874)
Q Consensus 1045 vr~~ai~~l~~l~~~~~~~~~~--~~ii~~l~~~l~~~~~~l~~~al~~L~~l~~~~g~~f 1103 (1874)
++..|..+|+.++........+ ...+..|...+.++++++|..|..+|+.+...-+.+|
T Consensus 473 v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~ 533 (644)
T 2z6h_A 473 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 533 (644)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhh
Confidence 9999999999987642221211 1246678889999999999999999999876544333
No 46
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.04 E-value=7.1e-05 Score=101.72 Aligned_cols=225 Identities=11% Similarity=0.074 Sum_probs=139.7
Q ss_pred CCCcHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhh-cCCChhhhhhHHHHHhHhh
Q 000196 19 GGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLL-ESNDAAENLGALRAIDELI 97 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~-~s~~~~~r~~~i~ai~~li 97 (1874)
+.+....+.+++..+-+++++.++.|.+ ++. +. +-+++.. . ....++ ++.+...|.-|+..+...|
T Consensus 23 ~~~Dv~~Le~lv~~ly~p~~~~r~qA~~---~L~-q~-q~sp~aw----~----~~~~iL~~s~~~~vR~fAa~~L~~~I 89 (1073)
T 3gjx_A 23 QKLDINLLDNVVNCLYHGEGAQQRMAQE---VLT-HL-KEHPDAW----T----RVDTILEFSQNMNTKYYGLQILENVI 89 (1073)
T ss_dssp CCCSHHHHHHHHHTTTCSSHHHHHHHHH---HHH-TS-SCCSCHH----H----HHTCC---CCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCHHHHHHHHH---HHH-HH-HcCchHH----H----HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 5578889999999998876554444332 221 11 1233322 1 122333 3567888999999999998
Q ss_pred ccccCc----chhHHHH-HHHHHHhhccc----CCChHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhhhcCCCcc
Q 000196 98 DVALGE----NASKVSK-FSNYMRTVFEV----KRDREILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVE 167 (1874)
Q Consensus 98 ~~~~~~----~~~~~~~-~~~~L~~~l~~----~~d~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~ 167 (1874)
...-.. ....++. ..+++...-.. ..+..++...+.++..++.. -+..|+++++.++..+- .+.
T Consensus 90 ~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~------~~~ 163 (1073)
T 3gjx_A 90 KTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASR------TSE 163 (1073)
T ss_dssp HHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHH------HCH
T ss_pred HhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhC------CCH
Confidence 753211 1222332 24555554321 13577888999999999986 34568888887776442 123
Q ss_pred hhHHHHHHHHHHHHhhcC----------------ccchhchHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHhhcch
Q 000196 168 YRRFAAVLILKEMAENAS----------------TVFNVHVAEFVDAIWVALR-DPTLAVRERAVEALRACLRVIEKRET 230 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p----------------~~~~~~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~~i~~r~~ 230 (1874)
..+..++.+|+.|.+..- +.|...++.+++.+...|. ..++.+..++.++++.+++++.-...
T Consensus 164 ~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i 243 (1073)
T 3gjx_A 164 SLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYI 243 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHh
Confidence 456778888888876521 1356677778877767774 44678888899999998887641110
Q ss_pred hhHHHHHHHHHHHH-HhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 231 RWRVQWYYRMFEAT-QDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 231 ~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
.. ..+++.+ ...+.+ .+.+.+|+.+|.+++..
T Consensus 244 -~~----~~ll~~L~~~~L~~---~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 244 -FE----TKLISTLIYKFLNV---PMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp -HS----SSHHHHHHHHTSSS---HHHHHHHHHHHHHHHHS
T ss_pred -cc----chHHHHHHHHhcCC---hHHHHHHHHHHHHHHhc
Confidence 01 2344444 344432 46789999999998874
No 47
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.03 E-value=1.9e-08 Score=130.72 Aligned_cols=483 Identities=14% Similarity=0.080 Sum_probs=271.1
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH--HHHHHHHHHHHhcCCChhHHHHHHHh
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI--EELVEKLLIAAVADADVTVRHSIFSS 584 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vl~~Ll~~~~~d~~~~vR~~~l~~ 584 (1874)
+..++.++++.+|..|+.+++.+..... .....+ ...++.|+.....++++++|..+..+
T Consensus 22 Lv~lL~~~~~~v~~~A~~~L~~l~~~~~------------------~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~ 83 (529)
T 1jdh_A 22 LTKLLNDEDQVVVNKAAVMVHQLSKKEA------------------SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGT 83 (529)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHTSHH------------------HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHcCCc------------------cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3456778899999999999888864211 011112 24566666655556788999888777
Q ss_pred ccC-CCC--cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHH
Q 000196 585 LYG-NRG--FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREE 661 (1874)
Q Consensus 585 l~~-~~~--f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~ 661 (1874)
|.. ... ....+.....++.|...++++++.+|..|+.+|+.++...+....-....-.++.+..+-.+ ++.+.+..
T Consensus 84 L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~ 162 (529)
T 1jdh_A 84 LHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAI 162 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHH
T ss_pred HHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHH
Confidence 742 011 00112223468889999999999999999999999998765321111111122233333344 56778888
Q ss_pred HHHHHHHHHHhCccccccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHH
Q 000196 662 SAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEAL 738 (1874)
Q Consensus 662 a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l 738 (1874)
++.+|..++...++.-..... ..++.++..+++. ........+..++..++.. ......+ ...+|.+++.+
T Consensus 163 ~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~----~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~g~~~~L~~ll 236 (529)
T 1jdh_A 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTY----TYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHL 236 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTTS--TTHHHHHHHTTHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC----ChHHHHHHHHHHHHHHhcC--cccHHHHHHCCCHHHHHHHH
Confidence 888888887543221111111 3456666767664 1344555666666666542 2222222 25788888888
Q ss_pred hcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCC
Q 000196 739 LDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGS 818 (1874)
Q Consensus 739 ~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~ 818 (1874)
.+. +...+..|+++|+.++..... ......+++.|++++.++ ++.+|..++.+++.++.-++-....
T Consensus 237 ~~~-~~~~~~~a~~~L~~l~~~~~~----~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~------- 303 (529)
T 1jdh_A 237 TDP-SQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMM------- 303 (529)
T ss_dssp TSS-CHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTTCHHHHHH-------
T ss_pred hCC-ChHHHHHHHHHHHHHhcCChh----hHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCHHHHHH-------
Confidence 876 577889999999999876532 223357899999999654 7899999999999885422210000
Q ss_pred cccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCc-hhhHHHHHHHHHHHHHHhCCC--CC-
Q 000196 819 HGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSL-ASYHQKVVGSLMFIFKSMGLG--CV- 894 (1874)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~-~~~~~~v~~al~~i~~~~~~~--~~- 894 (1874)
....-+++.|+..|.+++. ......++.++.++....+.. ..
T Consensus 304 ----------------------------------~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 349 (529)
T 1jdh_A 304 ----------------------------------VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQN 349 (529)
T ss_dssp ----------------------------------HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHH
T ss_pred ----------------------------------HHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 0011245667777754321 334445666666553211110 00
Q ss_pred CC-ccchhHHHHHHHhcCCc-chhHHHHHHHHHHHHHHH--HhHH--HhHHHHHHHHHHhhcCCCCCcccccccchhHHH
Q 000196 895 PY-LPKVLPDLFHTVRTCDD-YLKDYITWKLGTLVSIVR--QHIR--KYLQELFSLISELWSSFSLPATNRTYRGLPVLH 968 (1874)
Q Consensus 895 ~~-l~~ilp~ll~~l~~~~~-~~~~~~~~~l~~lv~~~~--~~i~--~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~ 968 (1874)
.. -...+|.++..++...+ .++..+++.++.+...-. +.+. ..++.++..+...... ++. .+.-
T Consensus 350 ~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---------v~~-~a~~ 419 (529)
T 1jdh_A 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD---------TQR-RTSM 419 (529)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH---------HC------
T ss_pred HHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH---------HHH-HHhc
Confidence 00 12457888888887654 677777777777653110 1111 1233333333321100 000 0111
Q ss_pred HHHHHHHHhhhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcchhh---h-hhhhHHHHHHhhcCCCcHH
Q 000196 969 LVQQLCLALNDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGTLDE---H-MHLLLPALIRLFKVDAPVD 1044 (1874)
Q Consensus 969 ~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~~~~---~-~~~ilp~l~~~~~~~~~~~ 1044 (1874)
++...+ +.+. .........++.++..+...-+. . -...+|.+++++..+ ..+
T Consensus 420 ~l~n~~---------------------~~~~--~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~-~~~ 475 (529)
T 1jdh_A 420 GGTQQQ---------------------FVEG--VRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IEN 475 (529)
T ss_dssp ---------------------------CBTT--BCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS-CHH
T ss_pred ccCchh---------------------hhcc--ccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC-chH
Confidence 111000 0000 00011112233333333221110 0 023578888888754 678
Q ss_pred HHHHHHHHHHhhcccccccch--hHhHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000196 1045 IRRAAIETLTRLIPRVQVTGH--ISSLVHHLKLVLDGKNDELRKDAVDALCCL 1095 (1874)
Q Consensus 1045 vr~~ai~~l~~l~~~~~~~~~--~~~ii~~l~~~l~~~~~~l~~~al~~L~~l 1095 (1874)
++..|..+++.++........ -...+..|.+.+.+++++++..|..+|..|
T Consensus 476 v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 476 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 999999999998753211111 123467788899989999999999988765
No 48
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.00 E-value=3.4e-07 Score=119.49 Aligned_cols=507 Identities=13% Similarity=0.094 Sum_probs=283.8
Q ss_pred hhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh
Q 000196 168 YRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~ 247 (1874)
.++.+-..++..+..|-+.. ..+..++..+.+++..+|+.+.-++..++. ..++....+.+.+...
T Consensus 54 ~k~~~l~Kli~l~~~G~d~s------~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~--------~~~e~~~L~iN~l~kD 119 (621)
T 2vgl_A 54 SKKKYVCKLLFIFLLGHDID------FGHMEAVNLLSSNRYTEKQIGYLFISVLVN--------SNSELIRLINNAIKND 119 (621)
T ss_dssp HHHHHHHHHHHHHHHSCCCC------SCHHHHHHGGGCSCHHHHHHHHHHHHHSCC--------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCc------hhHHHHHHHhcCCCHHHHHHHHHHHHHHcc--------CCcHHHHHHHHHHHHh
Confidence 34455555555444443322 345667788999999999999988876542 1234455667777788
Q ss_pred ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh--hcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHH
Q 000196 248 LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL--EHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICM 325 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~--~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~ 325 (1874)
+.+++ .-+|-.|+.+++.+. .+ ...+.+...|...+ .++++.||+.|+.++..+....|+.. + + +..+
T Consensus 120 l~~~n-~~ir~lALr~L~~i~--~~----e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-~-~-~~~~ 189 (621)
T 2vgl_A 120 LASRN-PTFMGLALHCIANVG--SR----EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-P-M-GDWT 189 (621)
T ss_dssp HHSCC-HHHHHHHHHHHHHHC--CH----HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-C-C-CSCH
T ss_pred cCCCC-HHHHHHHHHHhhccC--CH----HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-C-c-hhHH
Confidence 88875 455666666666552 22 23345667778888 89999999999999999988777533 2 1 2456
Q ss_pred HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCCC---C-----C-C-c---hhHHHHHHHH
Q 000196 326 NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRRG---K-----P-S-L---EALACVGNIA 390 (1874)
Q Consensus 326 ~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~~---~-----~-~-~---~a~~~l~~l~ 390 (1874)
+.+...|.+.+ .+..|+.+++.++..-+..+.++++.++..+...+....- + . . . .++.+++
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~--- 266 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQ--- 266 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGG---
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHH---
Confidence 66777775433 4678888899988877766778888888877766533211 0 0 0 1 1222222
Q ss_pred HHhCCC----chHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 000196 391 RAMGPV----MEPHVRGLLDIMFSAGLSTTLVDALEQITVSIPS--LLPTIQDRLLDCISFVLSKSHYSQARPAATPIRG 464 (1874)
Q Consensus 391 ~~~g~~----~~p~l~~ll~~ll~~~ls~~l~~~l~~i~~~~p~--l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~ 464 (1874)
.+++. ....+.++++.++... ...|. .......
T Consensus 267 -~~~~~~d~~~~~~l~~~L~~il~~~-------------~~~~ks~~l~~~n~--------------------------- 305 (621)
T 2vgl_A 267 -CYPPPEDPAVRGRLTECLETILNKA-------------QEPPKSKKVQHSNA--------------------------- 305 (621)
T ss_dssp -GSSSCSSHHHHHHHHHHHHHHHHHH-------------HSCCSCSSHHHHHH---------------------------
T ss_pred -HhCCCCCHHHHHHHHHHHHHHHHhh-------------ccCcccccccccch---------------------------
Confidence 22221 1111112222221100 00000 0000000
Q ss_pred CccCCCccccccCCchhHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCccccccc
Q 000196 465 NVMNIPQQVSDLNGSAPVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGA 544 (1874)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~ 544 (1874)
.....-.|..++..+.- ...+....-..+..++.+.++++|..|..++..++...+.
T Consensus 306 -------------~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--------- 362 (621)
T 2vgl_A 306 -------------KNAVLFEAISLIIHHDS-EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--------- 362 (621)
T ss_dssp -------------HHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---------
T ss_pred -------------HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---------
Confidence 00011112222222210 0011111112334567777899999999888888643210
Q ss_pred ccccccccchhHHHHHHHHHHHHHHhc-CCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHH
Q 000196 545 SRSNRTGGKRRRLIEELVEKLLIAAVA-DADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVA 623 (1874)
Q Consensus 545 ~~~~~~~~~~~~~~~~vl~~Ll~~~~~-d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l 623 (1874)
...+......++. .+. |+|..||..+++.+.. -..+ -.-..++..|...+.+.+.+.|..++..+
T Consensus 363 ----------~~~~~~~~~~i~~-~L~~d~d~~Ir~~aL~lL~~--l~~~-~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I 428 (621)
T 2vgl_A 363 ----------HEAVKTHIETVIN-ALKTERDVSVRQRAVDLLYA--MCDR-SNAQQIVAEMLSYLETADYSIREEIVLKV 428 (621)
T ss_dssp ----------HHHHHTTHHHHHH-HHTTCCCHHHHHHHHHHHHH--HCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHH-HhccCCCHhHHHHHHHHHHH--HcCh-hhHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 1223333333333 245 9999999999887731 0001 00123566666777778899999999999
Q ss_pred HhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChh
Q 000196 624 GRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNG 703 (1874)
Q Consensus 624 ~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~ 703 (1874)
+.++...|... ...-.+|.+++..- ++ ....++...+..++...+ .++.| ++..+...+.++. ....
T Consensus 429 ~~la~k~~~~~-~~~v~~Ll~ll~~~----~~-~v~~ev~~~l~~ii~~~~-~~~~~---~~~~l~~~l~~~~---~~~~ 495 (621)
T 2vgl_A 429 AILAEKYAVDY-TWYVDTILNLIRIA----GD-YVSEEVWYRVIQIVINRD-DVQGY---AAKTVFEALQAPA---CHEN 495 (621)
T ss_dssp HHHHHHHCSST-HHHHHHHHHHHHHH----GG-GSCSHHHHHHHHHHGGGC-SCHHH---HHHHHHHHHTSSS---CCHH
T ss_pred HHHHHhcCCcH-HHHHHHHHHHHHhh----cc-cchHHHHHHHHHHHhCCh-hHHHH---HHHHHHHHHcCcc---chHH
Confidence 99998766443 22333455555432 11 233345566666665543 23333 4556677777642 2445
Q ss_pred HHHHHHHHHHHHHHhcccc--hhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 000196 704 IISGVLVTVGDLARVGGFG--MRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKM 781 (1874)
Q Consensus 704 v~~~~~~~l~~La~~~g~~--~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~ 781 (1874)
+...++..+|+-+....+. ..| .+++..+.+.+.+. +..+|..++.++.++....+. ..+.+..+++.
T Consensus 496 li~~~~wilGEy~~~~~~~~~~~p--~~~l~~l~~~~~~~-~~~v~~~~Lta~~Kl~~~~p~-------~~~~i~~~l~~ 565 (621)
T 2vgl_A 496 LVKVGGYILGEFGNLIAGDPRSSP--LIQFNLLHSKFHLC-SVPTRALLLSTYIKFVNLFPE-------VKATIQDVLRS 565 (621)
T ss_dssp HHHHHHHHHHHHTHHHHSSTTSCH--HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHCGG-------GHHHHHHHHSS
T ss_pred HHHHHHHHhcchHHHhcccCCCCH--HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHChH-------HHHHHHHHHHH
Confidence 6666678888876543321 111 24455666666554 678999999999988654321 11233333333
Q ss_pred hcC--CCCHHHHHHHHHHHHHhc
Q 000196 782 LNG--ELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 782 l~~--~~~~~vr~~al~~lg~lg 802 (1874)
... +.+.++|..|......+.
T Consensus 566 ~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 566 DSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp HHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHc
Confidence 333 568999999988877664
No 49
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.96 E-value=6e-09 Score=119.06 Aligned_cols=189 Identities=8% Similarity=0.001 Sum_probs=151.2
Q ss_pred CCChHHHHHHHHHHHH-HhhhCCCcc---hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC-ccch-hchHHH
Q 000196 122 KRDREILVLASKVLGH-LARAGGAMT---ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS-TVFN-VHVAEF 195 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~-l~~~~g~~~---~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p-~~~~-~~l~~i 195 (1874)
+.+-.-|+.|...++. ++....... .+| ...+..+..++..+.+...|.+|+.++++|+++.. ..|. +|...+
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 5688999999999999 875422222 233 23366666777556777789999999999999988 7888 999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---
Q 000196 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG--- 272 (1874)
Q Consensus 196 l~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~--- 272 (1874)
+|.|+..+.|+++.||+++..|+..++..+.. ... ..++..+++.+...++++ .|.++.+++.+++.++...+
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~--~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~ 181 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LAS--SGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGY 181 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCT--TCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-ccc--CCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999988775421 100 002556788888888776 48999999999999998666
Q ss_pred hhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhh
Q 000196 273 EFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 273 ~~~~~~~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
+.+.+++ .++++.+..++++.++.||.+++.+++.++...++.
T Consensus 182 ~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 4577899 999999999999999999999999999998755543
No 50
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.94 E-value=1.3e-07 Score=122.66 Aligned_cols=308 Identities=8% Similarity=-0.025 Sum_probs=187.5
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcch
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~ 147 (1874)
...+.+++++++...|..|+.++..|..... ....+ ....+.|..++...+|.+++..|+++|..|+.... ...
T Consensus 19 i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~--~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~-~~~ 95 (529)
T 1jdh_A 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEA--SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLL 95 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH--HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH-HHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc--cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch-hHH
Confidence 4455567778899999999999999875421 11111 12445555555434589999999999999876421 111
Q ss_pred HHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc-hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 148 DEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH-VAEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 148 ~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~-l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
.+++ ..++.+++.|.++ +...|..|+.+|..++...+..-... -...+|.++..+.++++.+|..++.+|..+...
T Consensus 96 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~- 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG- 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-
Confidence 1222 2456666667543 45678889999999998765431111 246788999999999999999999988865421
Q ss_pred hhcchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH--HHHHHHHHHHhhcchhHHHHHHH
Q 000196 226 EKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY--REVAEIVLRYLEHRDRLVRLSIT 302 (1874)
Q Consensus 226 ~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~--~~i~~~ll~~~~~~~~~vr~~~~ 302 (1874)
....+.... ...++.+..-+.+.++...+.+++.++..+..+.. ....+ ...++.++..+.+.++.+++.++
T Consensus 174 ---~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 174 ---NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp ---CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT--HHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred ---CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 111111111 12334444444444445556666667766654221 12222 13566777778888899999999
Q ss_pred HHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhh-HHHHHHHHHhhcCCC--CC
Q 000196 303 SLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYL-PTITSHLREAIAPRR--GK 377 (1874)
Q Consensus 303 ~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l-~~i~~~l~~~L~~~~--~~ 377 (1874)
.++..++...+..- .....++.|...|...+ .|..|..+|+.++..-.+...... ...++.+.+.+.... ..
T Consensus 249 ~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~ 325 (529)
T 1jdh_A 249 WTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325 (529)
T ss_dssp HHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHH
Confidence 99999987654321 23567888888886544 477899999998764332211111 123444444443221 12
Q ss_pred CCchhHHHHHHHHH
Q 000196 378 PSLEALACVGNIAR 391 (1874)
Q Consensus 378 ~~~~a~~~l~~l~~ 391 (1874)
....++.+++.|+.
T Consensus 326 v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 326 ITEPAICALRHLTS 339 (529)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHc
Confidence 23467777777653
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.94 E-value=4.5e-08 Score=126.45 Aligned_cols=355 Identities=14% Similarity=0.106 Sum_probs=220.8
Q ss_pred HHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHH-HHHHHHHHhhhc-CCChhhhhhHHHHHhHhhcccc
Q 000196 25 ALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFM-DQLYDRISGLLE-SNDAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 25 ~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~-~~l~~~i~~l~~-s~~~~~r~~~i~ai~~li~~~~ 101 (1874)
.+..+++++.|.+.+.+ .|...+++++ .++-.+- ..... ..+++.+.++++ +.+...+..|..+|..+.....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklL---s~~~~~~-i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLL---SREKQPP-IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHH---TSSSCCC-HHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHH---cCCCCch-HHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 47889999998864444 4777777765 2222211 11111 224566667775 4557788889999999876531
Q ss_pred CcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHH-HHHHHHhhhcCCCcc----hhHHHHH
Q 000196 102 GENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEF-QVKMALDWLRGDRVE----YRRFAAV 174 (1874)
Q Consensus 102 ~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~-~~~~~~~~l~~~~~~----~~r~aA~ 174 (1874)
.. ...+. -..+.|..++. +.+.+++..|+++||.|+..+......++.. .++.++..|...... .....++
T Consensus 153 ~~-~~~vv~~Gaip~Lv~LL~-s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 153 EQ-TKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HH-HHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HH-HHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 11 11111 13567777775 5789999999999999987521111112221 355666677533222 2344567
Q ss_pred HHHHHHHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHHHhhccCC
Q 000196 175 LILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRN 251 (1874)
Q Consensus 175 ~~l~~la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~i~~~~~~~l~~~ 251 (1874)
.++..++.+. |..-...+..++|.++..+.++++.|+..|+.||+.+...-. ...+. -..+++.+..-+.++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~-----~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN-----ERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH-----HHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh-----hhHHHHHhccchHHHHHHhcCC
Confidence 7888888764 333345677899999999999999999999999987654211 11111 123455666666665
Q ss_pred CChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHH
Q 000196 252 APVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILT 330 (1874)
Q Consensus 252 ~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~ 330 (1874)
+..++..++.+++.++.+..+....-.+ ..+..+..++.++++.||+.++.+|..++...+.....-.-..++|.|..
T Consensus 306 -~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 306 -ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp -CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred -ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 4678889999999887644322111111 24456677788999999999999999999876643221111357888888
Q ss_pred hhcCCC--CcchHHHHHHHHHhhchhhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHH
Q 000196 331 VLRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIAR 391 (1874)
Q Consensus 331 ~L~~~~--~R~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~ 391 (1874)
.|.+.. .|..|..+|++++..-..+...++ ..+++.+.+.|...+.+....++.++..|..
T Consensus 385 lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 887765 467888999998765433322333 2355666666654433323345556655544
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.93 E-value=2.7e-08 Score=127.72 Aligned_cols=355 Identities=14% Similarity=0.102 Sum_probs=220.4
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHhhhcC-CChhhhhhHHHHHhHhhccccC
Q 000196 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD-QLYDRISGLLES-NDAAENLGALRAIDELIDVALG 102 (1874)
Q Consensus 26 ~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~-~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~~~ 102 (1874)
+..++++|.|.+.+.+ .|+.++++++ .+|-.+- ....++ -+++.+.+++++ .+...+..|..||..|.....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rkll---s~e~~pp-i~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~- 133 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLL---SREKQPP-IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS- 133 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHH---TCSSCCC-HHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCch-HHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-
Confidence 7888999999875544 4888888876 2332211 112221 245667777764 456778889999999875531
Q ss_pred cchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcc----hhHHHHHH
Q 000196 103 ENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVE----YRRFAAVL 175 (1874)
Q Consensus 103 ~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~----~~r~aA~~ 175 (1874)
+....+. -..+.|..++. +.+.++++.|+++|+.|+..+......+++ ..++.++..|...... .....++.
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~-s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLA-SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 1111111 13567777775 578999999999999998752111111111 1355566666533221 23445677
Q ss_pred HHHHHHhhc-CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH--HHHHHHHHHhhccCCC
Q 000196 176 ILKEMAENA-STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW--YYRMFEATQDGLGRNA 252 (1874)
Q Consensus 176 ~l~~la~~~-p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~--~~~i~~~~~~~l~~~~ 252 (1874)
.+..++.+. |..-...+..++|.+...+.++++.|+..|+.||+.+... . ....+. -..+++.+..-+.++
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~----~-~~~~~~i~~~g~i~~Lv~lL~~~- 286 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG----P-NERIEMVVKKGVVPQLVKLLGAT- 286 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS----C-HHHHHHHHTTTCHHHHHHHHTCS-
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc----h-hhhHHHHHhcccchhhhhhhcCC-
Confidence 788888764 3344456778999999999999999999999999876431 1 111111 123455666666665
Q ss_pred ChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHh
Q 000196 253 PVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTV 331 (1874)
Q Consensus 253 ~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~ 331 (1874)
+..++..++.+++.+.....+....-.+ ..+..+..++.++++.||+.++.++..++...+.....-.-..+++.|...
T Consensus 287 ~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~l 366 (510)
T 3ul1_B 287 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366 (510)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred ChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHH
Confidence 3678889999999887644322111111 133445566788899999999999999998666432211113678888888
Q ss_pred hcCCC--CcchHHHHHHHHHhhchhhhhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 332 LRIPA--ERDSGFIALGEMAGALDGELFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 332 L~~~~--~R~~a~~alg~la~~v~~~~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
|++.+ .|..|..+|++++.....+...++ ..+++.+.+.|...+.+....++.++..|...
T Consensus 367 L~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 87654 467889999998765433322333 23556666666544333334566666666543
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.89 E-value=3e-07 Score=108.15 Aligned_cols=189 Identities=12% Similarity=0.106 Sum_probs=142.1
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHH-
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLT- 647 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~- 647 (1874)
.+.|+++.+|..++.+|+. +..++.++.|..+++|+++.||..|+..|+.+..... . .+. +..++.
T Consensus 31 ~L~~~~~~vr~~A~~~L~~-------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~-~~~----l~~~L~~ 97 (280)
T 1oyz_A 31 LLDDHNSLKRISSARVLQL-------RGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-C-EDN----VFNILNN 97 (280)
T ss_dssp HTTCSSHHHHHHHHHHHHH-------HCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-T-HHH----HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHc-------cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-c-chH----HHHHHHH
Confidence 4689999999999999852 1235678899999999999999999999999874321 1 222 223332
Q ss_pred HHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH
Q 000196 648 YLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1874)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1874)
.+..+ .++..|..++++|+.+....+ ++.+.+++.++..+.++ ++.|+..++.+++.+..
T Consensus 98 ~~~~d-~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~-----~~~vR~~a~~aL~~~~~---------- 157 (280)
T 1oyz_A 98 MALND-KSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDK-----STNVRRATAFAISVIND---------- 157 (280)
T ss_dssp HHHHC-SCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHTC------------
T ss_pred HHhcC-CCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCC-----CHHHHHHHHHHHHhcCC----------
Confidence 22344 678899999999999976543 34456778888888875 78999999988886543
Q ss_pred HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 728 SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 728 ~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+..+|.++..+.|. +..+|..|+.+||.+.. ..+..++.|...++++ ++.+|..++++||.+|
T Consensus 158 ~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 KATIPLLINLLKDP-NGDVRNWAAFAININKY----------DNSDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhcc----------CcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence 23678888888876 57899999999998621 1257888888888754 7899999999999876
No 54
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.80 E-value=2.9e-07 Score=108.27 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=163.8
Q ss_pred hHHHHHHhhcccccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHH
Q 000196 481 PVQLALQTLARFNFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEE 560 (1874)
Q Consensus 481 ~~~~Al~~L~~~~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1874)
....|+..|+.+.- +-....+..++.++++.||..|+.+++.+.... ..+..
T Consensus 39 vr~~A~~~L~~~~~------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~----------------------~~~~~ 90 (280)
T 1oyz_A 39 KRISSARVLQLRGG------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK----------------------KCEDN 90 (280)
T ss_dssp HHHHHHHHHHHHCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT----------------------TTHHH
T ss_pred HHHHHHHHHHccCC------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc----------------------ccchH
Confidence 45678888887631 223344557788889999999998887763210 11333
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHhccCCCCcchh--hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH
Q 000196 561 LVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDF--LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1874)
Q Consensus 561 vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~--L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1874)
+++.|...+..|+++.||..++.+|+. +... -..+..++.+...++|+++.||..|+..|+.+.. | ...|.+
T Consensus 91 l~~~L~~~~~~d~~~~vr~~a~~aL~~---l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--~-~~~~~L 164 (280)
T 1oyz_A 91 VFNILNNMALNDKSACVRATAIESTAQ---RCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--K-ATIPLL 164 (280)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHH---HHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------CCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH---HhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--H-HHHHHH
Confidence 444444345689999999999999862 1110 0134678889999999999999999999998765 2 233333
Q ss_pred HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHh
Q 000196 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARV 718 (1874)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~ 718 (1874)
.+ .+ .+ +++..|..|++.|+.+... -+.+++.++..+.++ ++.|+..++.+++.+..
T Consensus 165 ~~-------~l-~d-~~~~vr~~a~~aL~~~~~~--------~~~~~~~L~~~l~d~-----~~~vR~~A~~aL~~~~~- 221 (280)
T 1oyz_A 165 IN-------LL-KD-PNGDVRNWAAFAININKYD--------NSDIRDCFVEMLQDK-----NEEVRIEAIIGLSYRKD- 221 (280)
T ss_dssp HH-------HH-TC-SSHHHHHHHHHHHHHHTCC--------CHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHTTC-
T ss_pred HH-------HH-cC-CCHHHHHHHHHHHHhhccC--------cHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhCC-
Confidence 22 22 33 5788999999999887311 245667778878764 78899998888887641
Q ss_pred cccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000196 719 GGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1874)
Q Consensus 719 ~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~l 798 (1874)
+..+|.++..+.|. ++|..|+.+||.+- . +..++.|...+++..++.++..++..+
T Consensus 222 ---------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~----~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 222 ---------KRVLSVLCDELKKN---TVYDDIIEAAGELG----D--------KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ---------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC----C--------GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ---------HhhHHHHHHHhcCc---cHHHHHHHHHHhcC----c--------hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 35677888888764 38889999999862 1 356788888887766778888877766
Q ss_pred H
Q 000196 799 G 799 (1874)
Q Consensus 799 g 799 (1874)
.
T Consensus 278 ~ 278 (280)
T 1oyz_A 278 K 278 (280)
T ss_dssp T
T ss_pred h
Confidence 4
No 55
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.78 E-value=7.4e-08 Score=123.57 Aligned_cols=355 Identities=13% Similarity=0.112 Sum_probs=221.3
Q ss_pred HHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhcCCChhHHHHH
Q 000196 503 ARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVADADVTVRHSI 581 (1874)
Q Consensus 503 v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~d~~~~vR~~~ 581 (1874)
+.++ +..+.+++++++..|+.++.+++..... +....++ ..+++.|+...-.+.++.++..+
T Consensus 59 i~~~-v~~l~s~d~~~q~~a~~~~rklls~e~~----------------ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~A 121 (510)
T 3ul1_B 59 VEDI-VKGINSNNLESQLQATQAARKLLSREKQ----------------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121 (510)
T ss_dssp HHHH-HHHHTSSCHHHHHHHHHHHHHHHTCSSC----------------CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHH-HHHhcCCCHHHHHHHHHHHHHHhcCCCC----------------chHHHHHHCCCHHHHHHHHCCCCCHHHHHHH
Confidence 3444 3567778899999999999998854321 0012222 24677788765556678898877
Q ss_pred HHhccC--CCCc--chhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH------HHHHHHHhh
Q 000196 582 FSSLYG--NRGF--DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQ 651 (1874)
Q Consensus 582 l~~l~~--~~~f--~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~ 651 (1874)
..+|+. ...- -..+.....++.|..++.+++.+||+.|+.+|+.|+..+|. .+..+ ..++..+..
T Consensus 122 a~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-----~r~~v~~~G~i~~Ll~lL~~ 196 (510)
T 3ul1_B 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-----FRDLVIKHGAIDPLLALLAV 196 (510)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHTTCHHHHHHHTCS
T ss_pred HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-----HHHHHHHcCChHHHHHHHHh
Confidence 766641 0000 01122234688999999999999999999999999987753 23322 223333332
Q ss_pred CC---CChHhHHHHHHHHHHHHHhCccc-cccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH
Q 000196 652 SS---ADNKCREESAKLLGCLIRNCERL-IRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI 727 (1874)
Q Consensus 652 ~~---~~~~~r~~a~~~L~~l~~~~~~~-~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~ 727 (1874)
.+ ........+++.+..+++..... -...+..+++.|+..+.+. ++.++..++.++..|+....+......
T Consensus 197 ~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-----~~~v~~~A~~aL~~L~~~~~~~~~~i~ 271 (510)
T 3ul1_B 197 PDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-----DPEVLADSCWAISYLTDGPNERIEMVV 271 (510)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHHhhchhhhHHHHH
Confidence 20 11233557888888887654221 1223467888888888764 778888999999988754322211111
Q ss_pred -HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCc
Q 000196 728 -SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDP 806 (1874)
Q Consensus 728 -~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp 806 (1874)
..++|.+++.|.+. +..++..|+.+||.++........ ...-...++.|..+|++. +..+|..++.+++.+.+-.+
T Consensus 272 ~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~~~~-~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~ 348 (510)
T 3ul1_B 272 KKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQ-KVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQ 348 (510)
T ss_dssp TTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHH-HHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCH
T ss_pred hcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHHHHH-HHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcH
Confidence 24688888888865 577899999999998765432100 000123445556666544 68999999999998865332
Q ss_pred cchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHH
Q 000196 807 HAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIF 886 (1874)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~ 886 (1874)
...... ...-+++.|+..|++.+. ..+..++.|+.++.
T Consensus 349 ~~~~~v-----------------------------------------~~~g~i~~Lv~lL~~~~~-~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 349 DQIQQV-----------------------------------------VNHGLVPFLVGVLSKADF-KTQKEAAWAITNYT 386 (510)
T ss_dssp HHHHHH-----------------------------------------HHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------------------------------HhcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHH
Confidence 211000 012356778888887764 44557778888877
Q ss_pred HHhCCCCCCCc--cchhHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 000196 887 KSMGLGCVPYL--PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSI 929 (1874)
Q Consensus 887 ~~~~~~~~~~l--~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~ 929 (1874)
.........++ ..+++.|+..++..++.++..++..|..+...
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 64332222222 35788888888888877777777776666543
No 56
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.75 E-value=1.8e-07 Score=120.81 Aligned_cols=350 Identities=13% Similarity=0.104 Sum_probs=221.2
Q ss_pred hhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHH-HHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 508 VLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRL-IEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 508 ~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
+..+.+++++++..|+..+.+++..... +....+ -..+++.|+.....++++.++..+..+|.
T Consensus 82 v~~l~s~d~~~q~~a~~~~rklLs~~~~----------------~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~ 145 (529)
T 3tpo_A 82 VKGINSNNLESQLQATQAARKLLSREKQ----------------PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALT 145 (529)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHTSSSC----------------CCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcCCCC----------------chHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4566778889998999999988753221 001122 23567778877666778899987777664
Q ss_pred C---CCC-cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHH------HHHHHHHhhCC---
Q 000196 587 G---NRG-FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHL------IQLLTYLEQSS--- 653 (1874)
Q Consensus 587 ~---~~~-f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l------~~~l~~l~~~~--- 653 (1874)
. ... -...+.....++.|+.++.+++.+||+.|+.+|+.|+..+|. .+..+ ..++..+....
T Consensus 146 nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-----~r~~i~~~g~i~~Ll~lL~~~~~~~ 220 (529)
T 3tpo_A 146 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-----FRDLVIKHGAIDPLLALLAVPDLST 220 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-----HHHHHHHTTCHHHHHHTTCSSCGGG
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-----HHHHHHHcCCcHHHHHHHhccchhH
Confidence 1 110 001122334688999999999999999999999999987753 23322 22233333220
Q ss_pred CChHhHHHHHHHHHHHHHhCcccc-ccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLI-RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELM 731 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~-~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~ll 731 (1874)
........+++.+..++....... ...+..+++.|+..+.+. ++.+...++.+|..++....+.....+ ..++
T Consensus 221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i 295 (529)
T 3tpo_A 221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-----DPEVLADSCWAISYLTDGPNERIEMVVKKGVV 295 (529)
T ss_dssp SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-----cHHHHHHHHHHHHHhhhhhhhhHHHHHhccch
Confidence 112335678888888876543221 223467888888888764 788888999999988864332211111 3468
Q ss_pred HHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhh
Q 000196 732 PLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKR 811 (1874)
Q Consensus 732 p~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~ 811 (1874)
|.++..|.+. +..++..|+.+|+.++....... ....-...++.|..+|++. ++.+|.+++.+|+.+.+-.+.....
T Consensus 296 ~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~-~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~ 372 (529)
T 3tpo_A 296 PQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQT-QKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQ 372 (529)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCC-ChhHHHHHHHHHHHHHccchHHH-HHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8888888865 57789999999999976543211 0001123556677777654 6899999999999886533221100
Q ss_pred hcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHHhCC
Q 000196 812 NQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKSMGL 891 (1874)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~~~~ 891 (1874)
. ...-+++.|+..|.+.+. ..+..++.|+.++......
T Consensus 373 v-----------------------------------------~~~g~i~~Lv~lL~~~~~-~v~~~A~~aL~nl~~~~~~ 410 (529)
T 3tpo_A 373 V-----------------------------------------VNHGLVPFLVGVLSKADF-KTQKAAAWAITNYTSGGTV 410 (529)
T ss_dssp H-----------------------------------------HHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHSCH
T ss_pred H-----------------------------------------HhcCcHHHHHHHhcCCCH-HHHHHHHHHHHHHHcCCCH
Confidence 0 011256677888877764 3455677788887654322
Q ss_pred CCCCCc--cchhHHHHHHHhcCCcchhHHHHHHHHHHHH
Q 000196 892 GCVPYL--PKVLPDLFHTVRTCDDYLKDYITWKLGTLVS 928 (1874)
Q Consensus 892 ~~~~~l--~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~ 928 (1874)
....++ ..++|.|+..++..++.++..++..|..+..
T Consensus 411 ~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 411 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222222 3478889998888887777777777666654
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.73 E-value=4e-07 Score=120.52 Aligned_cols=305 Identities=10% Similarity=0.185 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhcccc
Q 000196 23 LDALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 23 ~~~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~ 101 (1874)
...+..+++.+.... .+.+.|+..+..++........ .. + .+...+.+.+..+... .+|+.++..|....+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~-~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~ 84 (986)
T 2iw3_A 13 IKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHD---VP--E-HFFGELAKGIKDKKTA--ANAMQAVAHIANQSN 84 (986)
T ss_dssp HHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS---CC--H-HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTT
T ss_pred HHHHHHHHhhccccchhHHHHHHHHHHHHHhccccccc---cc--h-hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcC
Confidence 445667778776543 3444578888887743211111 11 1 2344444555443222 899999999986653
Q ss_pred CcchhHHHHHHHHHHhhccc--CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHH
Q 000196 102 GENASKVSKFSNYMRTVFEV--KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKE 179 (1874)
Q Consensus 102 ~~~~~~~~~~~~~L~~~l~~--~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~ 179 (1874)
.. +..-.-+.+.|..++.. +.+..|+++|..++..++.. ..+.-+...++.++++|.....|..|.+|+.++..
T Consensus 85 ~~-~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~ 160 (986)
T 2iw3_A 85 LS-PSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNA---VNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSA 160 (986)
T ss_dssp CC-TTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---SCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CC-CCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 22 21212222223333322 34578888888899998886 34555677888899999877789999999999999
Q ss_pred HHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHH
Q 000196 180 MAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHG 259 (1874)
Q Consensus 180 la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 259 (1874)
+++.+|..+..+++.++|.+..++.|.+++|..+|..++..+...+.+++. ..++|.+...+.+++ + ...
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-------~~~~~~~~~~~~~p~--~-~~~ 230 (986)
T 2iw3_A 161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-------ERFIPSLIQCIADPT--E-VPE 230 (986)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-------GGGHHHHHHHHHCTT--H-HHH
T ss_pred HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-------hhhHHHHHHHhcChh--h-hHH
Confidence 999999999999999999999999999999999999999999998887764 355666777777663 2 233
Q ss_pred HHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhh--ChhhHHHHHHHHHHHHHHHhhcC---
Q 000196 260 SLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHF--LRDRFVTNYLKICMNHILTVLRI--- 334 (1874)
Q Consensus 260 al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~--~~~~f~~~yl~~~~~~Ll~~L~~--- 334 (1874)
++..|++--. -.+.-.|-+.=+++.+.+.++.+...+++.++.++..+++. +|. -+..|++.++|.+......
T Consensus 231 ~~~~l~~~tf-v~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~-~~~~f~~~l~p~~~~~~~~~~~ 308 (986)
T 2iw3_A 231 TVHLLGATTF-VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQ-VIAPFLGKLLPGLKSNFATIAD 308 (986)
T ss_dssp HHHHHTTCCC-CSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHH-HHHHHHTTTHHHHHHHTTTCCS
T ss_pred HHHHhhcCee-EeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHH-HHhhhhhhhhhHHHHHhhccCC
Confidence 3333322100 01223356666777888888889888988888899999874 333 3556889999998887654
Q ss_pred CCCcchHHHHHHHHHhh
Q 000196 335 PAERDSGFIALGEMAGA 351 (1874)
Q Consensus 335 ~~~R~~a~~alg~la~~ 351 (1874)
+.-|+.|-.|+..+-.+
T Consensus 309 pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 309 PEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33487777776666433
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.69 E-value=5.5e-07 Score=99.87 Aligned_cols=192 Identities=21% Similarity=0.224 Sum_probs=139.6
Q ss_pred cCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCC
Q 000196 494 FKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADA 573 (1874)
Q Consensus 494 f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~ 573 (1874)
+.++.+.+.....++.++.++++.+|..|+.+++.+-.. ..+. .|+. .+.|+
T Consensus 6 ~~~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-----------------------~~~~----~L~~-~l~~~ 57 (201)
T 3ltj_A 6 HHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-----------------------RAVE----PLIK-ALKDE 57 (201)
T ss_dssp -CCCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----------------------GGHH----HHHH-HTTCS
T ss_pred ccccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-----------------------hHHH----HHHH-HHcCC
Confidence 334455566777788999999999999999888775321 1122 2332 35799
Q ss_pred ChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCC
Q 000196 574 DVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS 653 (1874)
Q Consensus 574 ~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~ 653 (1874)
++.+|..++.+|+. +..++.++.|..+++|+++.||..|+..|+.+... ...|.+. . .+ .+
T Consensus 58 ~~~vr~~a~~~L~~-------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~~L~----~---~l-~d- 118 (201)
T 3ltj_A 58 DAWVRRAAADALGQ-------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLI----K---AL-KD- 118 (201)
T ss_dssp SHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHH----H---HT-TC-
T ss_pred CHHHHHHHHHHHHh-------hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHH----H---HH-cC-
Confidence 99999999999852 12346788899999999999999999999997642 1223222 2 22 34
Q ss_pred CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHH
Q 000196 654 ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPL 733 (1874)
Q Consensus 654 ~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~ 733 (1874)
.++..|..|++.|+.+.. +..++.|...+.++ ++.|+..++.+++.+.. +..++.
T Consensus 119 ~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~A~~aL~~~~~----------~~~~~~ 173 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE-----DGWVRQSAADALGEIGG----------ERVRAA 173 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCS----------HHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc----------hhHHHH
Confidence 578899999999998842 23455667777764 78899999999888721 467888
Q ss_pred HHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 734 IVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 734 l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
+...+.|. +..+|..|..+|+.+-
T Consensus 174 L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 174 MEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 88888876 6789999999999853
No 59
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.60 E-value=3.6e-07 Score=105.45 Aligned_cols=234 Identities=14% Similarity=0.132 Sum_probs=157.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHhccC---CCC-cchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH
Q 000196 563 EKLLIAAVADADVTVRHSIFSSLYG---NRG-FDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL 638 (1874)
Q Consensus 563 ~~Ll~~~~~d~~~~vR~~~l~~l~~---~~~-f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l 638 (1874)
+.|+.. +.++++++|..++.+|.. ... ....+.....++.|...+++++.++|..|+.+|+.++..++.......
T Consensus 5 ~~L~~~-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 5 EKLVKL-LTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHH-TTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 344443 466778899888877741 110 111222335789999999999999999999999999987654321111
Q ss_pred HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHH
Q 000196 639 RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLAR 717 (1874)
Q Consensus 639 ~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~ 717 (1874)
..-.++.+..+..+ ++...++.|+++|+.++...+......+. ..++.++..+.+. ++.++..++.+++.++.
T Consensus 84 ~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-----~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 84 DAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-----DSEVQKEAARALANIAS 157 (252)
T ss_dssp HTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHc
Confidence 11122333333344 57889999999999998654433222222 4677788888764 78899999999999876
Q ss_pred hcccchhhc-HHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHH
Q 000196 718 VGGFGMRQY-ISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLK 796 (1874)
Q Consensus 718 ~~g~~~~~~-~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~ 796 (1874)
..+...... -...+|.+++.+.+. +...|..|+.+|+.++........... -...++.|+.+++++ ++.+|..++.
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~v~~~a~~ 234 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTST-DSEVQKEAQR 234 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHCCC-cHHHHHHHHH
Confidence 433221111 145889999999865 578999999999999874332211111 245788999998765 6899999999
Q ss_pred HHHHhcccCc
Q 000196 797 VLGIMGALDP 806 (1874)
Q Consensus 797 ~lg~lgaldp 806 (1874)
+++.++.-.+
T Consensus 235 ~L~~l~~~~~ 244 (252)
T 4hxt_A 235 ALENIKSGGW 244 (252)
T ss_dssp HHHHHHHTCB
T ss_pred HHHHHHcCCC
Confidence 9999875433
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.53 E-value=1.1e-06 Score=116.26 Aligned_cols=278 Identities=10% Similarity=0.099 Sum_probs=197.4
Q ss_pred hHHHHHHHHHHHHHhhh-CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC--ccchhchHHHHHHHHH
Q 000196 125 REILVLASKVLGHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS--TVFNVHVAEFVDAIWV 201 (1874)
Q Consensus 125 ~~v~~~aa~~lg~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p--~~~~~~l~~il~~i~~ 201 (1874)
..-++.|+..+..+... ++..... ...+..+...+. ++... .+|+.++..|++..+ .-+.||+-.++|.++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 102 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIK-DKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICT 102 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHT-SHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHh-ccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 44445666666666543 2211111 122333333332 33333 899999999997643 3569999999999999
Q ss_pred hhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHH
Q 000196 202 ALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYRE 281 (1874)
Q Consensus 202 ~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~ 281 (1874)
++.|....||.||..|+.++...+. . .....++|.+..+|.....|..+.||+.+++.|.+..++.+.-++.+
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~-~------~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVN-P------VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSC-G------GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCC-H------HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 9999999999999999998877654 1 12477888888888766579999999999999999878999999999
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhchhhhhhhhH
Q 000196 282 VAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGALDGELFHYLP 361 (1874)
Q Consensus 282 i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v~~~~~p~l~ 361 (1874)
+++.+-...-+..+.|++++..++..++...... -+.+.+|.|..++.++++-..++..|+... .|..-=.|-+.
T Consensus 176 ~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~----d~~~~~~~~~~~~~~p~~~~~~~~~l~~~t-fv~~v~~~~l~ 250 (986)
T 2iw3_A 176 LIPVLSETMWDTKKEVKAAATAAMTKATETVDNK----DIERFIPSLIQCIADPTEVPETVHLLGATT-FVAEVTPATLS 250 (986)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT----TTGGGHHHHHHHHHCTTHHHHHHHHHTTCC-CCSCCCHHHHH
T ss_pred hhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc----chhhhHHHHHHHhcChhhhHHHHHHhhcCe-eEeeecchhHH
Confidence 9999999999999999999999999988754422 134457888888888865444444444421 12221136666
Q ss_pred HHHHHHHHhhcCCCCCCCchhHHHHHHHHHHhCC--CchHHHHHHHHHHHhc---CCCHHHHH
Q 000196 362 TITSHLREAIAPRRGKPSLEALACVGNIARAMGP--VMEPHVRGLLDIMFSA---GLSTTLVD 419 (1874)
Q Consensus 362 ~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~~g~--~~~p~l~~ll~~ll~~---~ls~~l~~ 419 (1874)
-+++.+..+|..........+...+..|++-+.. +..||++.++|.+-.. ...|+.++
T Consensus 251 ~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~ 313 (986)
T 2iw3_A 251 IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEARE 313 (986)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHH
T ss_pred HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHH
Confidence 6778888888654322224677888899988875 6889999999988753 24566654
No 61
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.52 E-value=2.1e-06 Score=98.99 Aligned_cols=237 Identities=15% Similarity=0.073 Sum_probs=163.2
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHH--HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHH
Q 000196 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVS--KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1874)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~--~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~ 149 (1874)
+.+.+++++++...|..|+.++..+..... +....+. ...+.|..++. ..|.+++..|+++|+.|+.........+
T Consensus 5 ~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 5 EKLVKLLTSTDSETQKEAARDLAEIASGPA-SAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 445677888888899999999999976542 1111111 24567777775 4689999999999999987522122222
Q ss_pred HH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh
Q 000196 150 VE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1874)
Q Consensus 150 v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1874)
++ ..++.++..|.+ .+...|..|+.+|+.++.+.+..-...+ ...++.++..++++++.+|..|+.+|+.+...
T Consensus 83 ~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~--- 158 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG--- 158 (252)
T ss_dssp HHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---
Confidence 22 246666666654 4567889999999999976554322111 35788899999999999999999999887532
Q ss_pred cchhhHHH-HHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 228 RETRWRVQ-WYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 228 r~~~~~~~-~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
....... .-..+++.+...+.++ +.+++..++.+|+.+.....+....-. ...++.++..+++.++.+|+.++.++
T Consensus 159 -~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L 236 (252)
T 4hxt_A 159 -PDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRAL 236 (252)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 1111111 1234667777777765 468899999999998864433222211 23667888888899999999999999
Q ss_pred HhHhhhChhhH
Q 000196 306 PRIAHFLRDRF 316 (1874)
Q Consensus 306 ~~la~~~~~~f 316 (1874)
..++...+..+
T Consensus 237 ~~l~~~~~~~~ 247 (252)
T 4hxt_A 237 ENIKSGGWLEH 247 (252)
T ss_dssp HHHHHTCBCCC
T ss_pred HHHHcCCCccc
Confidence 99998776544
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.47 E-value=4.4e-06 Score=92.53 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=132.7
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
.+.|+++.+|..++.+|+. +..++.++.|...++|+++.||..|+..|+.+... ...|.+.+ .
T Consensus 22 ~L~~~~~~vr~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---~~~~~L~~-------~ 84 (201)
T 3ltj_A 22 NLQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE---RAVEPLIK-------A 84 (201)
T ss_dssp HTTCSCHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH-------H
T ss_pred HhcCCCHHHHHHHHHHHHh-------cCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH---HHHHHHHH-------H
Confidence 4689999999999999852 11235688899999999999999999999987632 22233322 2
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1874)
+ .+ .++..|..|++.|+.+.. +..++.++..+.++ ++.|+..++.+++.+.. +
T Consensus 85 l-~d-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~ 137 (201)
T 3ltj_A 85 L-KD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD----------E 137 (201)
T ss_dssp T-TC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHTC----------G
T ss_pred H-cC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCC----------H
Confidence 2 34 578899999999988732 12445566667654 78899999999888742 3
Q ss_pred hHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 729 ~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
..+|.+...+.|. +..+|..|+.+|+.+ | .+..++.|..+++++ ++.+|.++.+.|+.+.
T Consensus 138 ~~~~~L~~~l~d~-~~~vr~~A~~aL~~~----~--------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 RAVEPLIKALKDE-DGWVRQSAADALGEI----G--------GERVRAAMEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHH----C--------SHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHh----C--------chhHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 5677888888876 678999999999987 1 146778888888654 7899999999998875
No 63
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.45 E-value=3e-06 Score=94.75 Aligned_cols=175 Identities=19% Similarity=0.222 Sum_probs=131.2
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYL 649 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l 649 (1874)
+.|+++.+|..++..|+. +..++.++.|...++|+++.||..|+..|+.+.. + ...|.+.+ .+
T Consensus 28 L~~~~~~vR~~A~~~L~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~-~~~~~L~~-------~l 90 (211)
T 3ltm_A 28 LQDDSYYVRRAAAYALGK-------IGDERAVEPLIKALKDEDAWVRRAAADALGQIGD--E-RAVEPLIK-------AL 90 (211)
T ss_dssp TTCSSHHHHHHHHHHHHH-------HCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G-GGHHHHHH-------HT
T ss_pred HcCCCHHHHHHHHHHHHH-------hCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H-HHHHHHHH-------HH
Confidence 579999999999999852 1224678889999999999999999999999864 2 12233322 22
Q ss_pred hhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHh
Q 000196 650 EQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISE 729 (1874)
Q Consensus 650 ~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~ 729 (1874)
.+ .++..|..|+..|+.+.. +..++.|+..+.++ ++.|+..++.+++.+.. ++
T Consensus 91 -~~-~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~~ 143 (211)
T 3ltm_A 91 -KD-EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-----DWFVRIAAAFALGEIGD----------ER 143 (211)
T ss_dssp -TC-SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCC----------GG
T ss_pred -cC-CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCC----------HH
Confidence 34 578899999999988742 12345566667664 88899999999888732 35
Q ss_pred HHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 730 LMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 730 llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
.+|.+...+.|. +..+|..|+.+|+.+- .|..++.|...++++ ++.||.++..+|+.++
T Consensus 144 ~~~~L~~~l~d~-~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 144 AVEPLIKALKDE-DGWVRQSAADALGEIG------------GERVRAAMEKLAETG-TGFARKVAVNYLETHK 202 (211)
T ss_dssp GHHHHHHHTTCS-SHHHHHHHHHHHHHHC------------SHHHHHHHHHHHHHC-CHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHhC------------chhHHHHHHHHHhCC-CHHHHHHHHHHHHhcC
Confidence 677888888876 6789999999999872 156788888888754 7899999999998876
No 64
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.44 E-value=4.1e-07 Score=107.21 Aligned_cols=227 Identities=14% Similarity=0.093 Sum_probs=136.1
Q ss_pred HHHHHHHHHcCCC-CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc
Q 000196 25 ALNRILADLCTHG-NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGE 103 (1874)
Q Consensus 25 ~~~~~~~~L~s~~-~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~ 103 (1874)
....++.+|-++. +.+.+||.+|+.++........ +. .-.+. |...|+-.++|+|.+-++-++.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG-----R~---------~~~N~-DLAvRLLCVLALDRFGDYVSDq 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD-----IQ---------IRVDS-KLFSKIYEILVTDKFNDFVDDR 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC---------CC---------CCCCT-THHHHHHHHHHHBCCBBCSSSS
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc-----ee---------ccccH-HHHHHHHHHHHhccccccccCe
Confidence 4455666666665 4444666666666644321110 00 11112 5555666666666665542111
Q ss_pred chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhh
Q 000196 104 NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAEN 183 (1874)
Q Consensus 104 ~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~ 183 (1874)
--..||+.||++||.+ .+-... -+. +..++..+ ....|..||+|++.|+++
T Consensus 240 -------------------VVAPVRETaAQtLGaL-~hLp~e-~~I----L~qLV~~l-~~~~WEVRHGGLLGLKYL--- 290 (800)
T 3oc3_A 240 -------------------TVAPVRDAAAYLLSRI-YPLIGP-NDI----IEQLVGFL-DSGDWQVQFSGLIALGYL--- 290 (800)
T ss_dssp -------------------CBCHHHHHHHHHHHHH-TTTSCS-CCH----HHHHTTGG-GCSCHHHHHHHHHHHHHT---
T ss_pred -------------------eeeehHHHHHHHHHHH-HhCChh-HHH----HHHHHhhc-CCCCeeehhhhHHHHHHH---
Confidence 1248999999999999 652211 122 33333322 456789999999999999
Q ss_pred cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCCh-hHHHHHHH
Q 000196 184 ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPV-HSIHGSLL 262 (1874)
Q Consensus 184 ~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~-~~~~~al~ 262 (1874)
-+.+.. ++.+++.++.+|+|++..||..|+++|--+. .+ +.+..++..+.+.|.+-+|- .+..+...
T Consensus 291 -~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA------~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMd 358 (800)
T 3oc3_A 291 -KEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP------IT----DSLDLVLEKCWKNIESEELISVSKTSNLS 358 (800)
T ss_dssp -GGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC------CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHH
T ss_pred -HHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc------ch----hhHHHHHHHHHHHhhhhcccchhhHHHHH
Confidence 223222 8999999999999999999999999886554 11 12344444444444433221 22333344
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000196 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1874)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la 309 (1874)
.|..|......... ...+++.+..+++|.-..||.+++.++-++.
T Consensus 359 LLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 359 LLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 66666653321100 1156777888899999999999999887655
No 65
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.44 E-value=2.4e-06 Score=98.50 Aligned_cols=221 Identities=12% Similarity=0.063 Sum_probs=152.7
Q ss_pred CCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHH
Q 000196 122 KRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAI 199 (1874)
Q Consensus 122 ~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l-~~il~~i 199 (1874)
++|.+++..|++++.+++.........+++ ..++.+++.|+++. ...|..|+.+|+.++.+.+..-...+ ...++.+
T Consensus 23 s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 101 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHH
Confidence 568999999999998765531111122222 25677777886544 67889999999999986554322222 2478999
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhH-HHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHH
Q 000196 200 WVALRDPTLAVRERAVEALRACLRVIEKRETRWR-VQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMS 277 (1874)
Q Consensus 200 ~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~-~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~ 277 (1874)
+..|.++++.||+.|+.+|+.+... . ..+ .... ...++.+...+.++ +.+++..++.+|+.+.....+....
T Consensus 102 ~~lL~~~~~~v~~~a~~~L~~l~~~----~-~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 175 (252)
T 4db8_A 102 VQLLSSPNEQILQEALWALSNIASG----G-NEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQA 175 (252)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHTTS----C-HHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhcC----C-chHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999887432 1 112 2222 24677778778776 4788999999999988654332221
Q ss_pred HH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHHHHHh
Q 000196 278 RY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALGEMAG 350 (1874)
Q Consensus 278 ~~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~alg~la~ 350 (1874)
-. ...++.++..++++++.+|..++.++..++...+... .... ...++.|...+++.+ .|..|..+|++++.
T Consensus 176 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 176 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK-QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 11 2356778888899999999999999999997655432 2222 357888888887654 46788888888753
No 66
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.43 E-value=4.4e-06 Score=93.31 Aligned_cols=183 Identities=22% Similarity=0.240 Sum_probs=130.5
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.+...+.++++.+|..|+..++.+-.. ..+. .|+. .+.|+++.||..++.+|
T Consensus 23 ~L~~~L~~~~~~vR~~A~~~L~~~~~~-----------------------~~~~----~L~~-~l~~~~~~vr~~a~~aL 74 (211)
T 3ltm_A 23 MYIKNLQDDSYYVRRAAAYALGKIGDE-----------------------RAVE----PLIK-ALKDEDAWVRRAAADAL 74 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHCCG-----------------------GGHH----HHHH-HTTCSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCc-----------------------cHHH----HHHH-HHcCCCHHHHHHHHHHH
Confidence 445667888999999999888776321 1122 2333 45799999999999999
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
+. +..++.++.|...++|+++.||..|+..|+.+... ...|.+. .+ + .+ +++..|..|+..
T Consensus 75 ~~-------~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~---~~~~~L~----~~---l-~d-~~~~vr~~a~~a 135 (211)
T 3ltm_A 75 GQ-------IGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLI----KA---L-KD-EDWFVRIAAAFA 135 (211)
T ss_dssp HH-------HCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHH----HH---T-TC-SSHHHHHHHHHH
T ss_pred Hh-------hCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHH----HH---H-hC-CCHHHHHHHHHH
Confidence 62 12246788899999999999999999999998642 1223222 22 2 34 678899999999
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
|+.+.. +..++.|...+.++ ++.|+..++.+++.+.. +..++.+...+.|. +..
T Consensus 136 L~~~~~----------~~~~~~L~~~l~d~-----~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~ 189 (211)
T 3ltm_A 136 LGEIGD----------ERAVEPLIKALKDE-----DGWVRQSAADALGEIGG----------ERVRAAMEKLAETG-TGF 189 (211)
T ss_dssp HHHHCC----------GGGHHHHHHHTTCS-----SHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC-CHH
T ss_pred HHHcCC----------HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC-CHH
Confidence 998832 12455666777664 78899999999887732 56788888888886 678
Q ss_pred hHHHHHHHHHHHHhhc
Q 000196 746 KREVAVSTLGQVVQST 761 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~ 761 (1874)
+|..|..+|+.+....
T Consensus 190 vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 190 ARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999999876554
No 67
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.41 E-value=1.7e-06 Score=99.91 Aligned_cols=231 Identities=16% Similarity=0.135 Sum_probs=157.0
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHH
Q 000196 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1874)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~ 149 (1874)
+.+.+++++++...|..|+.++..++... ......+ ....+.|..++. ..+.+++..|+++|+.|+.........+
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34556788899999999999997766542 1111111 123466777775 4579999999999999987421122223
Q ss_pred HHH-HHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch-hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh
Q 000196 150 VEF-QVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1874)
Q Consensus 150 v~~-~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~-~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1874)
++. .++.+++.|.+ .++..|..|+.+|+.++.+.+.... -.-..+++.++..|.++++.||..|+.+|+.+...
T Consensus 93 ~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--- 168 (252)
T 4db8_A 93 IDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--- 168 (252)
T ss_dssp HHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---
T ss_pred HHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC---
Confidence 322 56677777765 4567889999999999887654311 22235889999999999999999999999887531
Q ss_pred cchhhHHHH-HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH-HHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 228 RETRWRVQW-YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR-EVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 228 r~~~~~~~~-~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~-~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
........ -..+++.+..-+.++ +.+++..++.+|+.+.....+....-.+ ..++.++..+.+.++.+|+.++.+|
T Consensus 169 -~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L 246 (252)
T 4db8_A 169 -GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246 (252)
T ss_dssp -CHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred -ChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence 11111111 134567777777766 4788999999999987644332222222 2667778888899999999999999
Q ss_pred HhHhh
Q 000196 306 PRIAH 310 (1874)
Q Consensus 306 ~~la~ 310 (1874)
..++.
T Consensus 247 ~~l~~ 251 (252)
T 4db8_A 247 EKLQS 251 (252)
T ss_dssp HTTC-
T ss_pred HHHhc
Confidence 98864
No 68
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.36 E-value=0.0061 Score=85.77 Aligned_cols=230 Identities=7% Similarity=0.014 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc-CCCcchhHHHHHHHHHHHHhh
Q 000196 105 ASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR-GDRVEYRRFAAVLILKEMAEN 183 (1874)
Q Consensus 105 ~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~-~~~~~~~r~aA~~~l~~la~~ 183 (1874)
..++.++...|...+.+..|.++++.|.+.|..+-..+. . ...+...|. ...+...|+.|...|+.....
T Consensus 7 ~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~-----~----~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~ 77 (1204)
T 3a6p_A 7 NALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCP-----I----CVPCGLRLAEKTQVAIVRHFGLQILEHVVKF 77 (1204)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCT-----T----HHHHHHHHTSTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCch-----H----HHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 445666777777777655578899999999988866532 1 122223332 344567888888888876643
Q ss_pred -cCccchhchHHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChh
Q 000196 184 -ASTVFNVHVAEFVDAIWVALR-------DPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVH 255 (1874)
Q Consensus 184 -~p~~~~~~l~~il~~i~~~l~-------D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~ 255 (1874)
....=...-..|-..++..+. ++.+.||...+.++..++..- .+ ..| +.+++.+...+.++ ..
T Consensus 78 ~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d---~p---~~W-p~ll~~L~~~~~~~--~~ 148 (1204)
T 3a6p_A 78 RWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE---WP---QHW-PDMLIELDTLSKQG--ET 148 (1204)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH---ST---TTC-TTHHHHHHHHHHTC--HH
T ss_pred hcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh---Cc---ccc-hHHHHHHHHHhcCC--HH
Confidence 222212233344444555443 245889998888887765431 11 123 34455555444432 35
Q ss_pred HHHHHHHHHHHHHHcch--------------hhhHHHHHHHHHHHHHHhhc-------------------chhHHHHHHH
Q 000196 256 SIHGSLLAVGELLRNTG--------------EFMMSRYREVAEIVLRYLEH-------------------RDRLVRLSIT 302 (1874)
Q Consensus 256 ~~~~al~~l~~ll~~~~--------------~~~~~~~~~i~~~ll~~~~~-------------------~~~~vr~~~~ 302 (1874)
.+++++.+|..+.+-.. +.+..++.+++..+...++. .+..++.+++
T Consensus 149 ~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL 228 (1204)
T 3a6p_A 149 QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAAL 228 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHH
Confidence 57888888888865210 12333444555544444332 2345777888
Q ss_pred HHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHhhc
Q 000196 303 SLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIALGEMAGAL 352 (1874)
Q Consensus 303 ~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~alg~la~~v 352 (1874)
.++.....|.+-.+.-..-+.+++.+...+..++.|..|++||..++..-
T Consensus 229 ~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 229 NTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccCHHHHHhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 88887777776544321112478888888887788999999999998643
No 69
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.31 E-value=2.9e-06 Score=94.71 Aligned_cols=194 Identities=17% Similarity=0.153 Sum_probs=134.4
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 600 CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
..+.+...+++++.++|..|+.+|+.++..++.........-.++.+..+..+ +++..++.|+++|+.++...+.....
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 45677788899999999999999999997775432222221122333333344 57889999999999998654432222
Q ss_pred ch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH-HhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 680 YI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI-SELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 680 y~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~-~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
.+ ...++.++..+.+. ++.++..++.+++.++....+.....+ ..++|.+++.+.+. +...|..|+++|+.+
T Consensus 92 i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 92 VIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (210)
T ss_dssp HHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 11 13567778888764 788999999999998864333222222 35799999999876 678999999999999
Q ss_pred HhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
+......... ..-...++.|.+++.++ ++.+|+.|+.+|+.+.
T Consensus 166 ~~~~~~~~~~-~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 166 ASGGNEQKQA-VKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HTSCHHHHHH-HHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHC
T ss_pred HcCCcHHHHH-HHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHh
Confidence 8763221111 11135788888988754 7899999999998774
No 70
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=98.30 E-value=0.00046 Score=97.14 Aligned_cols=485 Identities=11% Similarity=0.081 Sum_probs=248.5
Q ss_pred CChhHHHHHHHhccCCCCcchhhccHhhHH-HHHHHh-CCCCHHHHHHHHHHHHhhhcCC----cCccchHHHHHHHHHH
Q 000196 573 ADVTVRHSIFSSLYGNRGFDDFLAQADCLS-AIFAAL-NDEDFDVREYAISVAGRLSEKN----PAYVLPALRRHLIQLL 646 (1874)
Q Consensus 573 ~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~-~L~~~l-~D~~~~VR~~a~~~l~~l~~~~----p~~v~p~l~~~l~~~l 646 (1874)
.+..+|..+-+.|. .|.. +|+... ...... .+.+..||..|..+|....... |......+|+.+++.+
T Consensus 25 ~~~~~r~~Ae~~L~---~~~~---~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l 98 (1204)
T 3a6p_A 25 STQRYRLEALKFCE---EFKE---KCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELI 98 (1204)
T ss_dssp CCHHHHHHHHHHHH---HHHH---HCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH---HHHh---CchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 37778988877663 1111 222232 223333 4557899999999999877543 3333456676666665
Q ss_pred HHHhhC--CCChHhHHHHHHHHHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc----
Q 000196 647 TYLEQS--SADNKCREESAKLLGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG---- 719 (1874)
Q Consensus 647 ~~l~~~--~~~~~~r~~a~~~L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~---- 719 (1874)
...... ......|...+.++..+++.. ++.. +.+++.++..+.. ++.....++.++..+.+-.
T Consensus 99 ~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~------~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 99 ANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ------GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT------CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC------CHHHHHHHHHHHHHHHHHHcccc
Confidence 432111 024667888899999998773 4333 3444555555543 2344555666666665421
Q ss_pred ----------ccchhhcHHhHHHHHHHHHhcC------------------cchhhHHHHHHHHHHHHhhccccccccccc
Q 000196 720 ----------GFGMRQYISELMPLIVEALLDG------------------AAVTKREVAVSTLGQVVQSTGYVITPYNEY 771 (1874)
Q Consensus 720 ----------g~~~~~~~~~llp~l~~~l~d~------------------~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~ 771 (1874)
...+...++++++.+...+++. .+...+..|+.+++..+...+... .....
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~-i~~~~ 247 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSH-ITAEN 247 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHH-HHTTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHH-HHhcc
Confidence 0124555667888888777541 112244455666655443322110 00111
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCc
Q 000196 772 PQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSE 851 (1874)
Q Consensus 772 p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 851 (1874)
+.+++.++..+.+ +.+|.+|+.||..+....... .... .+ +
T Consensus 248 ~~ll~~l~~~l~~---~~lr~~A~ecL~~i~s~~~~~-~~~~------------------------~l----i------- 288 (1204)
T 3a6p_A 248 CKLLEILCLLLNE---QELQLGAAECLLIAVSRKGKL-EDRK------------------------PL----M------- 288 (1204)
T ss_dssp SHHHHHHHHGGGC---TTTHHHHHHHHHHHHTCCSCH-HHHG------------------------GG----G-------
T ss_pred chHHHHHHHHcCC---HHHHHHHHHHHHHHHhCCCCh-hhHH------------------------HH----H-------
Confidence 2588888877653 478999999998875422100 0000 00 0
Q ss_pred cchHHHHHHHHHHHc--cCC-CchhhHHHHHHHHHHHHHHhC------------CCCCCCccchhHHHHHHHhcCCcchh
Q 000196 852 DYYSTVAINSLMRIL--RDP-SLASYHQKVVGSLMFIFKSMG------------LGCVPYLPKVLPDLFHTVRTCDDYLK 916 (1874)
Q Consensus 852 ~~~~~~vi~~Ll~iL--~d~-s~~~~~~~v~~al~~i~~~~~------------~~~~~~l~~ilp~ll~~l~~~~~~~~ 916 (1874)
..+....+..++..+ .++ ...+.....+..++.++..+| ....+.+..+++.++...+..+..+-
T Consensus 289 ~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs 368 (1204)
T 3a6p_A 289 VLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLR 368 (1204)
T ss_dssp GGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhH
Confidence 001011111222221 111 111111122333333332222 13457788999999998887644444
Q ss_pred HHHHHHHHHHHHHH----HHhHHHhHHHHHHHHHHhhcCCCCCccccc--------------c-------cchhHHHHHH
Q 000196 917 DYITWKLGTLVSIV----RQHIRKYLQELFSLISELWSSFSLPATNRT--------------Y-------RGLPVLHLVQ 971 (1874)
Q Consensus 917 ~~~~~~l~~lv~~~----~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~--------------~-------~~~~~l~~i~ 971 (1874)
...+.....++... .+.+++|++.+++++...+.....|..... . ....+..++.
T Consensus 369 ~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~ 448 (1204)
T 3a6p_A 369 SSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMR 448 (1204)
T ss_dssp HHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 34333333333221 234678999999998543333222211000 0 0001233444
Q ss_pred HHHHHhhhhhhccchhhHHHHHHhcccc--cc-------------------cCc---hhhHHHHHHHHHH-Hhcch-hhh
Q 000196 972 QLCLALNDEFRTHLPVILPCCIQVLSDA--ER-------------------CND---YTYVLDILHTLEV-FGGTL-DEH 1025 (1874)
Q Consensus 972 ~l~~~l~~~f~~yl~~llp~ll~~l~~~--~~-------------------~~~---~~~~~~il~~l~~-~g~~~-~~~ 1025 (1874)
.++...+...-+|+ .+.+.+.+.+. .. +.. .+....+++++.. +.... .++
T Consensus 449 ~i~~v~p~~~l~~v---~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~ 525 (1204)
T 3a6p_A 449 LACRLDPKTSFQMA---GEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREE 525 (1204)
T ss_dssp HHHHHCHHHHHHHH---HHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhcCHHHHHHHH---HHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 44444444433332 23332332210 00 000 0111222333321 10101 133
Q ss_pred hh-hhHHHHHHhhc--CCCcHHHHHHHHHHHHhhcccccc-cchhHhHHHHHHHHhCC------------CCHHHHHHHH
Q 000196 1026 MH-LLLPALIRLFK--VDAPVDIRRAAIETLTRLIPRVQV-TGHISSLVHHLKLVLDG------------KNDELRKDAV 1089 (1874)
Q Consensus 1026 ~~-~ilp~l~~~~~--~~~~~~vr~~ai~~l~~l~~~~~~-~~~~~~ii~~l~~~l~~------------~~~~l~~~al 1089 (1874)
+. .++|.++..+- ...++.+|..++.+++.+..-..- .++++.++.-++..+.. .+.+++..|.
T Consensus 526 l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~ 605 (1204)
T 3a6p_A 526 IPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHAC 605 (1204)
T ss_dssp CCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHH
Confidence 32 35677776642 223566999999999988765332 24777777777766543 1247999999
Q ss_pred HHHHHHHHHhccccccchhhHHHHHHh
Q 000196 1090 DALCCLAHALGEDFTIFIPSIHKLLLK 1116 (1874)
Q Consensus 1090 ~~L~~l~~~~g~~f~~~ip~i~~~l~~ 1116 (1874)
.++..|+..++..+.+|++.|...+..
T Consensus 606 ~al~~L~~~~~~~L~p~~~~i~~~~~~ 632 (1204)
T 3a6p_A 606 SSIIKMCRDYPQLVLPNFDMLYNHVKQ 632 (1204)
T ss_dssp HHHHHHHHHCHHHHGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887654
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.30 E-value=0.00011 Score=73.95 Aligned_cols=184 Identities=16% Similarity=0.230 Sum_probs=134.1
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccc
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI 677 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~ 677 (1874)
.+++..+...|.|+-..||..|+.++..+++..|...-|.+++.+ .+ +..+ .....-.+-++.+|.+++--|+.+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~-vm---~~ks-EaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLF-SL---LKKS-EAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH-HH---HHHC-CSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH-HH---Hhhc-ccCchHHHHHHHHhHHHHhCHHHH
Confidence 367889999999999999999999999999999988777666633 23 2344 333444566789999998888665
Q ss_pred ccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 678 RPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 678 ~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
.+ +++.+....+- .++.++.+..+++++++...+..+ +.++.-+...+.+. +...|.+|+.-++.+
T Consensus 106 ~~----vVp~lfanyri-----gd~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltsk-d~~Dkl~aLnFi~al 171 (253)
T 2db0_A 106 KS----MIPVLFANYRI-----GDEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSK-NREDKLTALNFIEAM 171 (253)
T ss_dssp HH----HHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCS-SHHHHHHHHHHHHTC
T ss_pred Hh----hHHHHHHHHhc-----CCccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCC-ChHHHHHHHHHHHHH
Confidence 44 44455554443 378899999999999999876544 34444555666655 577888998888877
Q ss_pred HhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCcc
Q 000196 758 VQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPH 807 (1874)
Q Consensus 758 ~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~ 807 (1874)
.++...-+.|| ++.|+.+|.+ .+.-||-.+..+++-++-+.|-
T Consensus 172 Gen~~~yv~Pf------LprL~aLL~D-~deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 172 GENSFKYVNPF------LPRIINLLHD-GDEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp CTTTHHHHGGG------HHHHHGGGGC-SSHHHHHHHHHHHHHHHTSCHH
T ss_pred hccCccccCcc------hHHHHHHHcC-cchhhhHHHHHHHHHHHHcCHH
Confidence 66554334554 6677887754 4789999999999988755543
No 72
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.25 E-value=0.00015 Score=91.68 Aligned_cols=345 Identities=13% Similarity=0.067 Sum_probs=200.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHH--HHHHHHHhhhcCCChhhhhhHHHHHh
Q 000196 18 AGGGSLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMD--QLYDRISGLLESNDAAENLGALRAID 94 (1874)
Q Consensus 18 ~~~~~~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~--~l~~~i~~l~~s~~~~~r~~~i~ai~ 94 (1874)
.++.....+..+++.|++.+.+.+ .||..|..+.. -..+ ....+- .-+..+.+++++++...+..|+.||.
T Consensus 42 ~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~-----~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~ 115 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCY-----RNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALK 115 (584)
T ss_dssp CCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-----TCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHc-----CChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHH
Confidence 444455568888999988765444 47777766651 1111 111111 13466778899999999999999999
Q ss_pred HhhccccCcchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc----------
Q 000196 95 ELIDVALGENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---------- 162 (1874)
Q Consensus 95 ~li~~~~~~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~---------- 162 (1874)
.|......++...+.+ ..+.|..++....+.++.+.|+.+|..|+... .....++..-++.+++.+.
T Consensus 116 nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~ 194 (584)
T 3l6x_A 116 NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREP 194 (584)
T ss_dssp HHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC---
T ss_pred HHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccc
Confidence 9975421122222222 24556666653457899999999999998742 1222233333444443330
Q ss_pred -------CCCcchhHHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHhhc------CCchhHHHHHHHHHHHHHHHHh
Q 000196 163 -------GDRVEYRRFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALR------DPTLAVRERAVEALRACLRVIE 226 (1874)
Q Consensus 163 -------~~~~~~~r~aA~~~l~~la~~~p~---~~~~~l~~il~~i~~~l~------D~~~~VR~aA~~al~~~~~~i~ 226 (1874)
...++..+..|..+|+.|+.+.+. .+.. ...+++.++..++ +++..+.+.|..+|+.+.....
T Consensus 195 ~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~-~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 195 NEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp -------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence 112346778888999999865433 2221 1233444444333 4667788888888887654322
Q ss_pred hcchh----------------------hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch---hhhHHHH--
Q 000196 227 KRETR----------------------WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---EFMMSRY-- 279 (1874)
Q Consensus 227 ~r~~~----------------------~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---~~~~~~~-- 279 (1874)
...+. ...-|....++.+..-+.......++..|+-+|..|..+.+ ..+...+
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 11000 00012233444444444333346788899999988876432 2222222
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChh-hHHHHHHHHHHHHHHHhhcCCCC----------cchHHHHHHHH
Q 000196 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRD-RFVTNYLKICMNHILTVLRIPAE----------RDSGFIALGEM 348 (1874)
Q Consensus 280 ~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~-~f~~~yl~~~~~~Ll~~L~~~~~----------R~~a~~alg~l 348 (1874)
...++.++.++.+.+..|++.++.+|..|+..... ..+ -...+|.|...|..... ...|+.+|+++
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 34577888889999999999999999999975432 222 25688889988876521 23566666666
Q ss_pred Hhhchhhhhhhh-HHHHHHHHHhhcC
Q 000196 349 AGALDGELFHYL-PTITSHLREAIAP 373 (1874)
Q Consensus 349 a~~v~~~~~p~l-~~i~~~l~~~L~~ 373 (1874)
+..-........ ...++.+.+.+..
T Consensus 431 ~a~~~~~~~~I~~~g~I~~Lv~LL~s 456 (584)
T 3l6x_A 431 IAENLEAAKKLRETQGIEKLVLINKS 456 (584)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHCCChHHHHHHHhC
Confidence 533222211111 2345555555543
No 73
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.23 E-value=0.0036 Score=80.37 Aligned_cols=568 Identities=11% Similarity=0.062 Sum_probs=287.1
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000196 110 KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1874)
Q Consensus 110 ~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~ 189 (1874)
...+-|+..+.-..|..+.- =-.+.-.|...-+..+++ +.++++.+..- .+....|--++.++..+-+..|+.+.
T Consensus 132 ~ll~~~~~~~~~~~~~~~~~-~l~~~~~l~~~~~~~~~~-~~~l~~~~~~~---~~~~~~~~~~l~i~~~~~~~~~~~~~ 206 (778)
T 3opb_A 132 ALLNELQIRIHYGEDTHVTY-LLSIILQLLNKFKYNFKE-VRFLVKELILR---ISEDEVKSMMLIIFAELQSSFQKDFD 206 (778)
T ss_dssp HHHHHHHHHHHHTCSSCHHH-HHHHHHHHHHHSCCCSTT-TTHHHHHHHTT---TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcchhH-HHHHHHHHHHHcCccccc-hhhHHHHhccc---cChhhhHHHHHHHHHHHHHhCchHHH
Confidence 34444444443234443322 233344455544455566 77777777652 23345677777787888888888888
Q ss_pred hchHHHHHHHH-Hhhc--CCchhHHHHHHHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000196 190 VHVAEFVDAIW-VALR--DPTLAVRERAVEALRACLRVIEKRETR-WRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVG 265 (1874)
Q Consensus 190 ~~l~~il~~i~-~~l~--D~~~~VR~aA~~al~~~~~~i~~r~~~-~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~ 265 (1874)
..+..+++.++ .+=. +.++.+ .+..++.+++-++.+-... +.. ..+.+.+.+.+....+.+...+.+.+++
T Consensus 207 ~~~~~~~~~l~~e~~~~~~~~~~~--~~~~~l~~lfPi~p~~~s~lfl~---e~~~~~l~~~~~~~~~~~~~~a~L~lLs 281 (778)
T 3opb_A 207 KAVVDFMSSLIVEAEIDVGNDPLS--IIVKTLSELYPSLTTLCSEIFLT---KGLSKLFKKRVFEEQDLQFTKELLRLLS 281 (778)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHTTTTHHHHHHHHST---TTHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCccHH--HHHHHHHHHhcCCHHHHHHHHcc---ccHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 89999998554 2222 223222 3566666665544321111 000 1112222223322233455667666666
Q ss_pred HHHH--cchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCC--CcchH
Q 000196 266 ELLR--NTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPA--ERDSG 341 (1874)
Q Consensus 266 ~ll~--~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~--~R~~a 341 (1874)
.... .+-+++..++-+.+..++. +..+|..+...+-.+..+.+..-. -...+...+...|.+++ .|..|
T Consensus 282 aACi~~~cR~~I~~~~~~~L~~~l~-----~~~ir~lAavvL~KL~~~~~~~~~--si~~La~~~~~~L~~~~~~~~~~A 354 (778)
T 3opb_A 282 SACIDETMRTYITENYLQLLERSLN-----VEDVQIYSALVLVKTWSFTKLTCI--NLKQLSEIFINAISRRIVPKVEMS 354 (778)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHTT-----SGGGHHHHHHHHHHHTGGGTCTTC--CHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHhCCcHHHHHHHHhHHHHHHHHhc-----cHHHHHHHHHHHHHHhcCCCCCcC--cHHHHHHHHHHHHhcCCccHHHHH
Confidence 5544 2346676666666555442 356777666666666655432211 13445555566665543 36788
Q ss_pred HHHHHHHHhhchhhhhhh---hHHHHHHHHHhhcCC-CCCCCchhHHHHHHHHHHhCCCch---HHHHHHHHHHHhcCCC
Q 000196 342 FIALGEMAGALDGELFHY---LPTITSHLREAIAPR-RGKPSLEALACVGNIARAMGPVME---PHVRGLLDIMFSAGLS 414 (1874)
Q Consensus 342 ~~alg~la~~v~~~~~p~---l~~i~~~l~~~L~~~-~~~~~~~a~~~l~~l~~~~g~~~~---p~l~~ll~~ll~~~ls 414 (1874)
++.|+-+.... +++.. -+..++.+.+.+... +......++..++.+..... ... +-+..+
T Consensus 355 vEgLaYLSl~~--~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~-~~~~e~~~l~~L---------- 421 (778)
T 3opb_A 355 VEALAYLSLKA--SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPE-EXXXXXXXXXXX---------- 421 (778)
T ss_dssp HHHHHHHTTSS--HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCC-CCCCCCC---------------
T ss_pred HHHHHHHhCCH--HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCc-ccchhhhhhhhh----------
Confidence 88888875322 22211 234455555555431 11111123333333332211 111 111110
Q ss_pred HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccCCCccccccCCchhHHH-HHHhhccc
Q 000196 415 TTLVDALEQITVS-IPSLLPTIQDRLLDCISFVLSKSHYSQARPAATPIRGNVMNIPQQVSDLNGSAPVQL-ALQTLARF 492 (1874)
Q Consensus 415 ~~l~~~l~~i~~~-~p~l~~~i~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Al~~L~~~ 492 (1874)
+..++. .|. . + ..+ +..++++.... -...+..
T Consensus 422 -------k~~A~~~~p~----------------------~--~-------------~~d-~~~~~~~~v~~~~~~~l~e- 455 (778)
T 3opb_A 422 -------XXXXXXXXPA----------------------A--D-------------KVG-AEKAAKEDILLFNEKYILR- 455 (778)
T ss_dssp ---------------------------------------------------------CC-THHHHHHHHHHHHHHHTTT-
T ss_pred -------hhhccccCcc----------------------c--C-------------ccc-ccccchHHHHHHHHHHHHH-
Confidence 000000 000 0 0 000 00000000000 0111111
Q ss_pred ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHH-HHHHHHHHHHHhc
Q 000196 493 NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLI-EELVEKLLIAAVA 571 (1874)
Q Consensus 493 ~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~~Ll~~~~~ 571 (1874)
....| .+..++.++++.+|..|+.++..+.... .. ...++ ...++.|+....+
T Consensus 456 ----aGvIp----~Lv~Ll~S~s~~~re~A~~aL~nLS~d~-~~-----------------R~~lvqqGal~~LL~lL~s 509 (778)
T 3opb_A 456 ----TELIS----FLKREMHNLSPNCKQQVVRIIYNITRSK-NF-----------------IPQLAQQGAVKIILEYLAN 509 (778)
T ss_dssp ----TTHHH----HHHHHGGGSCHHHHHHHHHHHHHHHTSG-GG-----------------HHHHHHTTHHHHHHHHTTC
T ss_pred ----CcCHH----HHHHHHcCCCHHHHHHHHHHHHHHcCCH-HH-----------------HHHHHHCCCHHHHHHHHhc
Confidence 11112 2335567788999999999888885321 00 01111 2345556655444
Q ss_pred CCCh--hHHHHHHHhccCC-CCcchhhc-----cHhhHHHHHHHhCC-CCH-------------HHHHHHHHHHHhhhcC
Q 000196 572 DADV--TVRHSIFSSLYGN-RGFDDFLA-----QADCLSAIFAALND-EDF-------------DVREYAISVAGRLSEK 629 (1874)
Q Consensus 572 d~~~--~vR~~~l~~l~~~-~~f~~~L~-----~~~~l~~L~~~l~D-~~~-------------~VR~~a~~~l~~l~~~ 629 (1874)
.++. .+|..+..+|... ..-++.+. ..+.++.|+..|.. +.. --+..|+.+|..|+..
T Consensus 510 ~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~ 589 (778)
T 3opb_A 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS 589 (778)
T ss_dssp C---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC
Confidence 4333 2777776666310 00011110 12578889988872 221 1266788899999886
Q ss_pred Cc---Cccc-hHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccc-ccch----HH---HHHHHHHHhhccC
Q 000196 630 NP---AYVL-PALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLI-RPYI----AP---IHKALVARLLEGT 696 (1874)
Q Consensus 630 ~p---~~v~-p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~-~py~----~~---il~~ll~~l~~~~ 696 (1874)
.. ..+- ..++ .-.++.+..+..+ ++...|..|+++++.++... ..+ ..++ +. =++.|+..+..+
T Consensus 590 ~~n~~E~~r~~Ii~~~ga~~~L~~LL~s-~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~- 666 (778)
T 3opb_A 590 ETSDGEEVCKHIVSTKVYWSTIENLMLD-ENVPLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQLS- 666 (778)
T ss_dssp CSHHHHHHHHHHHHSHHHHHHHHHGGGC-SSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGCS-
T ss_pred CcccchHHHHHHHHhcCHHHHHHHHHhC-CCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcCC-
Confidence 52 1111 1222 1233445555556 56788999999999999643 222 2222 11 267788888653
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcC-cchhhHHHHHHHHHHHHhh----cc-cccccc
Q 000196 697 GINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDG-AAVTKREVAVSTLGQVVQS----TG-YVITPY 768 (1874)
Q Consensus 697 ~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~-~~~~~r~~A~~~Lg~l~~~----~~-~~i~p~ 768 (1874)
+..++.++..+++.++...+......+ ...++.++..+++. ++.+.|..++.++..+++. .+ ..+.-+
T Consensus 667 ----D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~ 742 (778)
T 3opb_A 667 ----DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLL 742 (778)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHH
T ss_pred ----CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHH
Confidence 778888888888877543322112222 25788888888874 4678999999999999973 22 233334
Q ss_pred ccchHHHHHHHHHhcCCC
Q 000196 769 NEYPQLLGLLLKMLNGEL 786 (1874)
Q Consensus 769 ~~~p~ll~~Ll~~l~~~~ 786 (1874)
.+.+.+.+.|.++++.+.
T Consensus 743 ~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 743 QENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HSCHHHHHHHHHHHSSSS
T ss_pred hcChHHHHHHHHHHhCCC
Confidence 445778888888887654
No 74
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.21 E-value=9.7e-05 Score=92.92 Aligned_cols=401 Identities=12% Similarity=0.080 Sum_probs=204.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcccccc
Q 000196 601 LSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIRP 679 (1874)
Q Consensus 601 l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~p 679 (1874)
++.++..|+.++++++..|...|+.++..++..-..... ..+..++..+ .+ +++..++.|+++|..++...++.-..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~s-~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RS-PNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHH-cC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 556667777788899999999999999776532101111 1222333333 34 57888999999999998643322111
Q ss_pred ch-HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhh-cHHhHHHHHHHHHh--------cC-------c
Q 000196 680 YI-APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQ-YISELMPLIVEALL--------DG-------A 742 (1874)
Q Consensus 680 y~-~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~-~~~~llp~l~~~l~--------d~-------~ 742 (1874)
.+ ...++.|+..++.. .++.++..++.+|+.|+.. +.... .+...+|.+++.|. +. .
T Consensus 82 i~~~G~i~~Lv~lL~~~----~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRT----GNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHTTCHHHHHHHHTTC----CCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHcCCHHHHHHHHhhC----CCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 11 13466777778732 2678999999999999875 33333 33478999999983 11 1
Q ss_pred chhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHhcc----cCccchhhhc
Q 000196 743 AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG-----ELVWSTRREVLKVLGIMGA----LDPHAHKRNQ 813 (1874)
Q Consensus 743 ~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~-----~~~~~vr~~al~~lg~lga----ldp~~~~~~~ 813 (1874)
+......|+++|+.++.. .....-..+.+..++.|+.+|++ ..+.++...++.++..+.. ..|.......
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 223344999999999865 22111111223566677766653 1233455555555544321 0010000000
Q ss_pred c-cCCC--cccc---cccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHH
Q 000196 814 Q-LSGS--HGEV---TRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFK 887 (1874)
Q Consensus 814 ~-~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~ 887 (1874)
. .... ..+. ......... ....+....+........+..+..-+++.|+..|.+.+.......++.|+.++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMM-NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HTC-----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccchhhccchhhh-hccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 0 0000 0000 000000000 0000000000000001112234456778888888765544555566667666643
Q ss_pred HhCCCCCCC-----c--cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCccccc
Q 000196 888 SMGLGCVPY-----L--PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRT 960 (1874)
Q Consensus 888 ~~~~~~~~~-----l--~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~ 960 (1874)
.-+. ..++ + ...+|.++..+++.++.++..+.+.|+.+... .
T Consensus 314 ~~~~-~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~---------------------------- 362 (457)
T 1xm9_A 314 SKGL-MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P---------------------------- 362 (457)
T ss_dssp CSSS-HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G----------------------------
T ss_pred CcCc-chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H----------------------------
Confidence 2111 0001 1 36788899988888877777777766665420 0
Q ss_pred ccchhHHHHHHHHHHHhhhhhhccchhhHHHHHHhccccccc--CchhhHHHHHHHHHHHhcchhhhhh-----hhHHHH
Q 000196 961 YRGLPVLHLVQQLCLALNDEFRTHLPVILPCCIQVLSDAERC--NDYTYVLDILHTLEVFGGTLDEHMH-----LLLPAL 1033 (1874)
Q Consensus 961 ~~~~~~l~~i~~l~~~l~~~f~~yl~~llp~ll~~l~~~~~~--~~~~~~~~il~~l~~~g~~~~~~~~-----~ilp~l 1033 (1874)
.+..++. ...+|.+++.|...+.. .+..+...++.++..+...-+++.. -.+|.|
T Consensus 363 ----~~~~~i~--------------~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L 424 (457)
T 1xm9_A 363 ----LLHRVMG--------------NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI 424 (457)
T ss_dssp ----GGHHHHH--------------HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHH
T ss_pred ----HHHHHHH--------------HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence 1111111 12456677777543211 0112233344444333221122221 246777
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhhcccc
Q 000196 1034 IRLFKVDAPVDIRRAAIETLTRLIPRV 1060 (1874)
Q Consensus 1034 ~~~~~~~~~~~vr~~ai~~l~~l~~~~ 1060 (1874)
+++...+.+..+++.|...|..+....
T Consensus 425 ~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 425 INLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 777765446778888888887776543
No 75
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.21 E-value=1.5e-05 Score=88.95 Aligned_cols=193 Identities=14% Similarity=0.084 Sum_probs=134.4
Q ss_pred HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccch
Q 000196 111 FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFN 189 (1874)
Q Consensus 111 ~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~ 189 (1874)
..++|..++. +.|.+++..|+++|+.|+.........+++ ..++.+++.|.++ +...|..|+.+|+.++.+.+..-.
T Consensus 13 ~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 13 ELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3567888886 578999999999999998642212222222 2566777777644 567889999999999976554322
Q ss_pred hch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHhhccCCCChhHHHHHHHHHHHH
Q 000196 190 VHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW-YYRMFEATQDGLGRNAPVHSIHGSLLAVGEL 267 (1874)
Q Consensus 190 ~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~-~~~i~~~~~~~l~~~~~~~~~~~al~~l~~l 267 (1874)
..+ ...++.++..|.++++.||..|+.+|+.+... ........ -...++.+..-+.++ +.+++..++.+|..+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASG----GNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC----CHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 111 24678899999999999999999999987531 11111111 234667777777766 468899999999999
Q ss_pred HHcchhhhHHHH-HHHHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000196 268 LRNTGEFMMSRY-REVAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1874)
Q Consensus 268 l~~~~~~~~~~~-~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~ 310 (1874)
.....+....-. ...++.+...+.+.++.+|+.++.+|..++.
T Consensus 166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 875333221111 1356778888899999999999999998874
No 76
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.18 E-value=7.5e-05 Score=93.95 Aligned_cols=314 Identities=11% Similarity=0.048 Sum_probs=186.3
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHH-HH-HHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccC
Q 000196 26 LNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFS-RF-MDQLYDRISGLLESNDAAENLGALRAIDELIDVALG 102 (1874)
Q Consensus 26 ~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~-~~-~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~ 102 (1874)
+..+++.|++.+.+.+ .|+..|+.+.. . .+... .. -....+.+.+++++++...+..|..++..|.... .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~----~--~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~ 76 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCF----Q--DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-T 76 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTS----S--CSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-H
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHc----C--ChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-H
Confidence 5678888988875544 48777777651 1 11111 11 1223566778888999999999999999997541 1
Q ss_pred cchhHHHH--HHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc--------CC-------C
Q 000196 103 ENASKVSK--FSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR--------GD-------R 165 (1874)
Q Consensus 103 ~~~~~~~~--~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~--------~~-------~ 165 (1874)
+....+.+ ..+.|..++..+.+.++.+.|+++|+.|+.. ......+++.-++.+++.|. ++ .
T Consensus 77 ~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 77 TNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 12222221 1456666665345899999999999999976 22333355567777777772 11 1
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHHHhhcC------CchhHHHHHHHHHHHHHHHHhhcch-------
Q 000196 166 VEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIWVALRD------PTLAVRERAVEALRACLRVIEKRET------- 230 (1874)
Q Consensus 166 ~~~~r~aA~~~l~~la~~~p~~~~~~l--~~il~~i~~~l~D------~~~~VR~aA~~al~~~~~~i~~r~~------- 230 (1874)
+......|+.+|+.|+.+ |.....-. +..++.++..|++ ++..+.+.|..+|+.+........+
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 223344888999999977 54221111 1455555555543 5667777777777665311100000
Q ss_pred ----------------------------------------hhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 231 ----------------------------------------RWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 231 ----------------------------------------~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
..+.-|....++.+..-|....+.+++.+|+-+|..+..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 0000111223333333343333457788888888887764
Q ss_pred chh---hh-HHHH--HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCC-c-----
Q 000196 271 TGE---FM-MSRY--REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAE-R----- 338 (1874)
Q Consensus 271 ~~~---~~-~~~~--~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~-R----- 338 (1874)
.++ .+ +..+ ...++.++.++.+.+..|++.++++|..++....- ....-...++.|...|..... +
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~--~~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL--HRVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG--HHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH--HHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 433 22 2222 23567888889999999999999999999874322 111224678888888876431 1
Q ss_pred --chHHHHHHHHHh
Q 000196 339 --DSGFIALGEMAG 350 (1874)
Q Consensus 339 --~~a~~alg~la~ 350 (1874)
..++.+|+++..
T Consensus 393 v~~~~l~~l~ni~~ 406 (457)
T 1xm9_A 393 ILSSACYTVRNLMA 406 (457)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 256666666653
No 77
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.13 E-value=0.0013 Score=80.69 Aligned_cols=357 Identities=12% Similarity=0.108 Sum_probs=209.9
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHHH
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWYE 1365 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~E 1365 (1874)
++....+.|.|..|+.+++..+... ++.......|..+|.+.|+.|.+.-.++.+... .. ....+..|.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 5677788899999998887766532 344567778899999999999988777643321 11 122344588
Q ss_pred HhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCCh
Q 000196 1366 KLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGEW 1443 (1874)
Q Consensus 1366 ~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~W 1443 (1874)
+.|+|++|+..|++.+...++. .+...++..++...|+|+.-....+... .+..... ....+.....+|+|
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~~ 151 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDF---IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV----RSDLGNLLKALGRL 151 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHH----HHHHHHHHHTTSCH
T ss_pred HCCCHHHHHHHHHHHHHcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHHccCH
Confidence 9999999999999988754432 3456778888999999865554443211 1111111 11233445556666
Q ss_pred hhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCC
Q 000196 1444 DQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVG 1523 (1874)
Q Consensus 1444 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~ 1523 (1874)
+.-.++....-... ......+..+-.+ .....+.++.+.
T Consensus 152 ~~A~~~~~~al~~~----------------p~~~~~~~~l~~~------------------~~~~g~~~~A~~------- 190 (388)
T 1w3b_A 152 EEAKACYLKAIETQ----------------PNFAVAWSNLGCV------------------FNAQGEIWLAIH------- 190 (388)
T ss_dssp HHHHHHHHHHHHHC----------------TTCHHHHHHHHHH------------------HHTTTCHHHHHH-------
T ss_pred HHHHHHHHHHHHhC----------------CCCHHHHHHHHHH------------------HHHcCCHHHHHH-------
Confidence 65554333211000 0000001100000 000111111111
Q ss_pred CCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 000196 1524 NPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETS 1603 (1874)
Q Consensus 1524 ~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~ 1603 (1874)
..++.+. +.| ++...|...+.+..+.|+++.|...+.++...+|.
T Consensus 191 ---------------------------~~~~al~-----~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-- 235 (388)
T 1w3b_A 191 ---------------------------HFEKAVT-----LDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-- 235 (388)
T ss_dssp ---------------------------HHHHHHH-----HCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT--
T ss_pred ---------------------------HHHHHHh-----cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC--
Confidence 1111111 122 34667888888888888888888888887776542
Q ss_pred cccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHh
Q 000196 1604 HENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKR 1683 (1874)
Q Consensus 1604 ~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~ 1683 (1874)
.+.+....+..++..|+ ..+|+..++..+.... . ...++..+|....
T Consensus 236 --------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p------------------~----~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 236 --------HAVVHGNLACVYYEQGL---IDLAIDTYRRAIELQP------------------H----FPDAYCNLANALK 282 (388)
T ss_dssp --------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCS------------------S----CHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC------------------C----CHHHHHHHHHHHH
Confidence 35666677777888884 5788888877654210 0 0122344444443
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCc
Q 000196 1684 ALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD 1763 (1874)
Q Consensus 1684 ~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~ 1763 (1874)
.. ...++....|.++++.+|+...+|..+|....+ . .-...|++.|-+++... .
T Consensus 283 ~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~-------g~~~~A~~~~~~al~~~------p 336 (388)
T 1w3b_A 283 EK------GSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-------Q-------GNIEEAVRLYRKALEVF------P 336 (388)
T ss_dssp HH------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-------T-------TCHHHHHHHHHHHTTSC------T
T ss_pred Hc------CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-------c-------CCHHHHHHHHHHHHhcC------C
Confidence 32 235677888888888888888888877765432 1 12346778888877663 2
Q ss_pred chHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000196 1764 DSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1874)
Q Consensus 1764 ~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1874)
........+-.+++..|..++....+++.+..
T Consensus 337 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23445566677777888877777666666543
No 78
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.12 E-value=4.6e-05 Score=88.80 Aligned_cols=195 Identities=15% Similarity=0.113 Sum_probs=134.2
Q ss_pred hhHHHHHH-HhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccc
Q 000196 599 DCLSAIFA-ALNDEDFDVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERL 676 (1874)
Q Consensus 599 ~~l~~L~~-~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~ 676 (1874)
..++.++. +++.++++||..|+.+||.++..+|..-.-.+. ..+..++.-+..+ .+...|+.|+++|+.+++..+..
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~ 159 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD-ACDTVRVKALFAISCLVREQEAG 159 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHH
Confidence 35778888 999999999999999999999988742100011 1233344444444 46788999999999999877654
Q ss_pred cccchH-HHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHH
Q 000196 677 IRPYIA-PIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVST 753 (1874)
Q Consensus 677 ~~py~~-~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~ 753 (1874)
...+.. ..++.|+..+++. +..++..++.+|+.++....+ ...++ ..++|.++..|... +..+|+.|+.+
T Consensus 160 ~~~~~~~ggi~~L~~lL~~~-----d~~v~~~A~~aLs~L~~~~~~-~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~a 232 (296)
T 1xqr_A 160 LLQFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPE-HKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGA 232 (296)
T ss_dssp HHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGG-GHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhCChH-HHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHH
Confidence 444443 5777888888764 788999999999999876333 33333 25889999999865 67899999999
Q ss_pred HHHHHhhccccc----cccccchHHHHHHHHHhc-CCCCHHHHHHHHHHHHHh
Q 000196 754 LGQVVQSTGYVI----TPYNEYPQLLGLLLKMLN-GELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 754 Lg~l~~~~~~~i----~p~~~~p~ll~~Ll~~l~-~~~~~~vr~~al~~lg~l 801 (1874)
|+.++....... .+...+..+++.....++ .+...++...+.+++-.+
T Consensus 233 L~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 233 LCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 999998743221 111224566666666666 333456666666665543
No 79
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.024 Score=72.96 Aligned_cols=226 Identities=12% Similarity=0.147 Sum_probs=136.5
Q ss_pred hcCCChhHHHHHHHhcc---CCCCcchhhccHhhHHHHHHHhCCCCHH---HHHHHHHHHHhhh-cCCcCccchHH--HH
Q 000196 570 VADADVTVRHSIFSSLY---GNRGFDDFLAQADCLSAIFAALNDEDFD---VREYAISVAGRLS-EKNPAYVLPAL--RR 640 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~---~~~~f~~~L~~~~~l~~L~~~l~D~~~~---VR~~a~~~l~~l~-~~~p~~v~p~l--~~ 640 (1874)
...+++.+|..+..+|. .+...-..+.+...++.|+..+.+.... +|..|..+|.++. ..+|..+.+.. ..
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~ 545 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALN 545 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTT
T ss_pred HcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcccc
Confidence 34567778877666552 2222222334445688888888766544 8999999999988 44554432200 02
Q ss_pred HHHHHHHHHhhCCCC------------hHhHHHHHHHHHHHHHhCc---ccccc-chH--HHHHHHHHHhhccCCCCCCh
Q 000196 641 HLIQLLTYLEQSSAD------------NKCREESAKLLGCLIRNCE---RLIRP-YIA--PIHKALVARLLEGTGINANN 702 (1874)
Q Consensus 641 ~l~~~l~~l~~~~~~------------~~~r~~a~~~L~~l~~~~~---~~~~p-y~~--~il~~ll~~l~~~~~~~~~~ 702 (1874)
.+..++.-|..+++. ...+-+|+.+|..++.... +.++. .+. ..++.+...+.++ +.
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~-----n~ 620 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE-----NV 620 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS-----SH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC-----CH
Confidence 222333322211011 1236689999999998652 22222 222 3556666666653 77
Q ss_pred hHHHHHHHHHHHHHHhcccch-hhcH----Hh---HHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHH
Q 000196 703 GIISGVLVTVGDLARVGGFGM-RQYI----SE---LMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQL 774 (1874)
Q Consensus 703 ~v~~~~~~~l~~La~~~g~~~-~~~~----~~---llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~l 774 (1874)
.++.+++.++..|+... +.+ ..++ +. =++.++..+.. .+.+.|.+|.++|+.+......+..-....+..
T Consensus 621 ~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia~~ll~~~~g 698 (778)
T 3opb_A 621 PLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIAKELLTKKEL 698 (778)
T ss_dssp HHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHcccc
Confidence 89999999999998632 222 1232 11 27778877754 578899999999998865444332222334578
Q ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHhc
Q 000196 775 LGLLLKMLNGE-LVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 775 l~~Ll~~l~~~-~~~~vr~~al~~lg~lg 802 (1874)
++.++++++.. .+.++|..++.++..+.
T Consensus 699 i~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 699 IENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 88888888752 47889988888877664
No 80
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.05 E-value=0.00015 Score=94.86 Aligned_cols=247 Identities=9% Similarity=0.020 Sum_probs=159.2
Q ss_pred hhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc
Q 000196 83 AAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR 162 (1874)
Q Consensus 83 ~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~ 162 (1874)
...|.||++|++-.--+. ++ ....+.|..++. .++..++..|+-++|.+-.. +-..+.++.++..+.
T Consensus 451 ~~ir~gAaLGLGla~~GS-~~-----eev~e~L~~~L~-dd~~~~~~~AalALGli~vG--Tgn~~ai~~LL~~~~---- 517 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGS-AN-----IEVYEALKEVLY-NDSATSGEAAALGMGLCMLG--TGKPEAIHDMFTYSQ---- 517 (963)
T ss_dssp HHHHHHHHHHHHHHSTTC-CC-----HHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHhcCC-CC-----HHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcc--cCCHHHHHHHHHHHh----
Confidence 567899999999874442 22 134566667664 34556677899999976443 223445555555444
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMF 241 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~ 241 (1874)
++.++..|.++++.|+.+.-+.+.... .++ ..| .|.++.+|.+|+.|++.... . ......++.++
T Consensus 518 e~~~e~vrR~aalgLGll~~g~~e~~~----~li----~~L~~~~dp~vRygaa~alglAya--G----TGn~~aIq~LL 583 (963)
T 4ady_A 518 ETQHGNITRGLAVGLALINYGRQELAD----DLI----TKMLASDESLLRYGGAFTIALAYA--G----TGNNSAVKRLL 583 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCGGGGH----HHH----HHHHHCSCHHHHHHHHHHHHHHTT--T----SCCHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHhhhCCChHHHH----HHH----HHHHhCCCHHHHHHHHHHHHHHhc--C----CCCHHHHHHHH
Confidence 345667788899999988777665432 333 333 37899999999998873211 1 11123344555
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHH-hhcchhHHHHHHHHHhHhHhhhChhhHHHHH
Q 000196 242 EATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRY-LEHRDRLVRLSITSLLPRIAHFLRDRFVTNY 320 (1874)
Q Consensus 242 ~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~-~~~~~~~vr~~~~~~i~~la~~~~~~f~~~y 320 (1874)
..+.. +. +.++|.+|+.+|+.++-+..+ .+..++.. .++.++.||..+..++|.++.-.+.
T Consensus 584 ~~~~~---d~-~d~VRraAViaLGlI~~g~~e--------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------ 645 (963)
T 4ady_A 584 HVAVS---DS-NDDVRRAAVIALGFVLLRDYT--------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------ 645 (963)
T ss_dssp HHHHH---CS-CHHHHHHHHHHHHHHTSSSCS--------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------
T ss_pred HHhcc---CC-cHHHHHHHHHHHHhhccCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------
Confidence 55543 33 357899999999987654332 22333332 3568999999999999999865553
Q ss_pred HHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCCC
Q 000196 321 LKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPTITSHLREAIAPRR 375 (1874)
Q Consensus 321 l~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~~ 375 (1874)
+.++..|...+.+.. .|..|+.+||.++........|.+..+...+.....+++
T Consensus 646 -~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 646 -QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKH 701 (963)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSS
T ss_pred -HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhccc
Confidence 344554444454443 488999999999876666556777777777777776543
No 81
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.99 E-value=0.0015 Score=85.61 Aligned_cols=291 Identities=15% Similarity=0.137 Sum_probs=174.1
Q ss_pred HHHHhhhcc---CCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCC------
Q 000196 504 RDSVVLYLD---DEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADAD------ 574 (1874)
Q Consensus 504 ~~~~~~~l~---~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~------ 574 (1874)
...+.+|+. +.++.+|..|..+++.+.... .. +++.-|... +.+++
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--------------------~~----~~~~lL~~~-L~~~~~~~~~~ 448 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--------------------GR----DTTDYLKNI-IVENSGTSGDE 448 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--------------------TH----HHHHHHHHH-HHHHSSCCSCH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--------------------cH----HHHHHHHHH-HcCcccccccc
Confidence 345567776 567899988888887765311 01 122222222 22223
Q ss_pred --hhHHHHHHHhccCCCCcchhh--ccHhhHHHHHHHhCCCCHHHHHHHHHHHHhh--hcCCcCccchHHHHHHHHHHHH
Q 000196 575 --VTVRHSIFSSLYGNRGFDDFL--AQADCLSAIFAALNDEDFDVREYAISVAGRL--SEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 575 --~~vR~~~l~~l~~~~~f~~~L--~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l--~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
+.+|..+.-+|+. -+. ...+++..|...+.|++..+|..|.-.+|-+ ...|+ +.+..++..
T Consensus 449 ~~~~ir~gAaLGLGl-----a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--------~ai~~LL~~ 515 (963)
T 4ady_A 449 DVDVLLHGASLGIGL-----AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--------EAIHDMFTY 515 (963)
T ss_dssp HHHHHHHHHHHHHHH-----HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--------HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-----HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--------HHHHHHHHH
Confidence 6788887777752 011 1246788888888888888898888888876 33332 112222332
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS 728 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~ 728 (1874)
+..+ .+...|..++..||.+.-..++. ++.++ ..+... .++.++.+++.++|--- .|..-.
T Consensus 516 ~~e~-~~e~vrR~aalgLGll~~g~~e~----~~~li----~~L~~~----~dp~vRygaa~alglAy--aGTGn~---- 576 (963)
T 4ady_A 516 SQET-QHGNITRGLAVGLALINYGRQEL----ADDLI----TKMLAS----DESLLRYGGAFTIALAY--AGTGNN---- 576 (963)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHTTTCGGG----GHHHH----HHHHHC----SCHHHHHHHHHHHHHHT--TTSCCH----
T ss_pred Hhcc-CcHHHHHHHHHHHHhhhCCChHH----HHHHH----HHHHhC----CCHHHHHHHHHHHHHHh--cCCCCH----
Confidence 3233 34567777888888875444433 33333 334432 37788887777766322 222222
Q ss_pred hHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccc
Q 000196 729 ELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHA 808 (1874)
Q Consensus 729 ~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~ 808 (1874)
..+..++..+.+..+..+|..|+.+||.+.-... +..+.++..|....++.+|+.+..++|.+++=.|.
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~- 645 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL- 645 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-
Confidence 3334344444333456799999999998754321 22344445454455799999999999998742221
Q ss_pred hhhhcccCCCcccccccCCCCCCCCCCccccccccCCCCCCCccchHHHHHHHHHHHccCCCchhhHHHHHHHHHHHHHH
Q 000196 809 HKRNQQLSGSHGEVTRAASDSGQHIQPMDEFPMDLWPSFATSEDYYSTVAINSLMRILRDPSLASYHQKVVGSLMFIFKS 888 (1874)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vi~~Ll~iL~d~s~~~~~~~v~~al~~i~~~ 888 (1874)
..++..|.+.+.|+.. .+...++.|+..|...
T Consensus 646 -----------------------------------------------~~aid~L~~L~~D~d~-~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 646 -----------------------------------------------QSAIDVLDPLTKDPVD-FVRQAAMIALSMILIQ 677 (963)
T ss_dssp -----------------------------------------------HHHHHHHHHHHTCSSH-HHHHHHHHHHHHHSTT
T ss_pred -----------------------------------------------HHHHHHHHHHccCCCH-HHHHHHHHHHHHHhcC
Confidence 3466777787777754 4455666677766554
Q ss_pred hCCCCCCCccchhHHHHHHHhc
Q 000196 889 MGLGCVPYLPKVLPDLFHTVRT 910 (1874)
Q Consensus 889 ~~~~~~~~l~~ilp~ll~~l~~ 910 (1874)
......|.+.+++..+...+.+
T Consensus 678 tnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 678 QTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred CccccchHHHHHHHHHHHHHhc
Confidence 4444557788888888887765
No 82
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.97 E-value=0.0013 Score=66.40 Aligned_cols=216 Identities=13% Similarity=0.121 Sum_probs=159.7
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcch
Q 000196 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTA 147 (1874)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~ 147 (1874)
.++.+.+..++...-|..+..|+..+..++.-...-..+.+.++.-.++ .+.-...-...++++|.++.. .+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~----ksEaIpltqeIa~a~G~la~i----~P 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLK----KSEAIPLTQEIAKAFGQMAKE----KP 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH----HCCSHHHHHHHHHHHHHHHHH----CH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh----hcccCchHHHHHHHHhHHHHh----CH
Confidence 4456666677777788899999999888876542222334443333333 244466667889999999986 78
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh
Q 000196 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK 227 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~ 227 (1874)
+.|...++-.+.-.+-. +...|..-..+|++++..-|..+. .++.-|...+.||+..=|-+|.+-++++
T Consensus 103 e~v~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~----~v~rdi~smltskd~~Dkl~aLnFi~al------ 171 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA----SIVRDFMSMLSSKNREDKLTALNFIEAM------ 171 (253)
T ss_dssp HHHHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHTSCSSHHHHHHHHHHHHTC------
T ss_pred HHHHhhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHH------
Confidence 89999999888776532 556788888899999999888754 6777777888899976677776654432
Q ss_pred cchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHh
Q 000196 228 RETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPR 307 (1874)
Q Consensus 228 r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~ 307 (1874)
+..+..+...++|.+..-|.+.+ .-+|-++...|+.+.+.. |.++.++...+.-+++++..|+..|.+.++.
T Consensus 172 --Gen~~~yv~PfLprL~aLL~D~d-eiVRaSaVEtL~~lA~~n-----pklRkii~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 172 --GENSFKYVNPFLPRIINLLHDGD-EIVRASAVEALVHLATLN-----DKLRKVVIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp --CTTTHHHHGGGHHHHHGGGGCSS-HHHHHHHHHHHHHHHTSC-----HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred --hccCccccCcchHHHHHHHcCcc-hhhhHHHHHHHHHHHHcC-----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 12455677888999988888764 678888888999888643 5577777777777899999999999999988
Q ss_pred Hhh
Q 000196 308 IAH 310 (1874)
Q Consensus 308 la~ 310 (1874)
++.
T Consensus 244 l~l 246 (253)
T 2db0_A 244 LLL 246 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 83
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.95 E-value=0.006 Score=79.78 Aligned_cols=167 Identities=14% Similarity=0.123 Sum_probs=104.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|..++.+..+.|+++.|...+.++....+. .+......+..+...|+ ..+|+..+++++...
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG----------THLPYLFLGMQHMQLGN---ILLANEYLQSSYALF 471 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT----------CSHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 35678888888888888888888888887765442 24555666677777774 578888888766431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh------ccc-chHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC------ATK-WGKAWHSWA 1719 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~------~~~-~~k~w~~wA 1719 (1874)
.. + ...+..+|...... ...++..+.|+++.+. +|+ +..+|..+|
T Consensus 472 ~~------------------~----~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 472 QY------------------D----PLLLNELGVVAFNK------SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp CC------------------C----HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred CC------------------C----hHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 10 0 12233344433332 2356778888888777 444 367787777
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
..+.+. .-...|++.|-+++... + ........+..++...|..++..+.+++.+.
T Consensus 524 ~~~~~~--------------g~~~~A~~~~~~~~~~~-----p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 524 HAYRKL--------------KMYDAAIDALNQGLLLS-----T-NDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHT--------------TCHHHHHHHHHHHHHHS-----S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHh--------------cCHHHHHHHHHHHHHhC-----C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 665541 12346777777777664 2 2234456666777777887776666666554
No 84
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.93 E-value=0.00034 Score=81.39 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=119.4
Q ss_pred hhhhhHHHHHhHhhccccCcchhHHHH--HHHHHHh-hcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHh
Q 000196 84 AENLGALRAIDELIDVALGENASKVSK--FSNYMRT-VFEVKRDREILVLASKVLGHLARAGGAMTADEVE-FQVKMALD 159 (1874)
Q Consensus 84 ~~r~~~i~ai~~li~~~~~~~~~~~~~--~~~~L~~-~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~ 159 (1874)
..|..|+..|..+++-. ++...+.+ -.+.|.. ++. +.+++++..|++++|.++.........+++ .-++.++.
T Consensus 55 e~k~~Al~~L~~lv~~~--dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 55 QEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCh--hhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 46667777777776532 12221111 1234555 775 568999999999999998752222222333 25667777
Q ss_pred hhcCCCcchhHHHHHHHHHHHHhhcCccchhch-HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH-
Q 000196 160 WLRGDRVEYRRFAAVLILKEMAENASTVFNVHV-AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWY- 237 (1874)
Q Consensus 160 ~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l-~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~- 237 (1874)
.|.++.+...|..|+.+|+.++.+.|......+ ...++.+...|+++++.||..|+.||+.+... ....+....
T Consensus 132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~----~~~~~~~vv~ 207 (296)
T 1xqr_A 132 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG----HPEHKGTLCS 207 (296)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----CGGGHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC----ChHHHHHHHH
Confidence 776555567889999999999988665333222 25788899999999999999999999987653 111122222
Q ss_pred HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHc
Q 000196 238 YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRN 270 (1874)
Q Consensus 238 ~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~ 270 (1874)
..+++.+..-|..++ .+++..++.+|+.++..
T Consensus 208 ~g~i~~Lv~LL~~~d-~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEH-SPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCC-STHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCC-hhHHHHHHHHHHHHHhC
Confidence 246666666666663 67899999999999875
No 85
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.92 E-value=0.00078 Score=83.25 Aligned_cols=360 Identities=13% Similarity=0.081 Sum_probs=186.4
Q ss_pred CCCcHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHhhhChHH-HHHHHHHHHHHHHhhhcCCC------------hhh
Q 000196 19 GGGSLDALNRILADLCTHGNPKEGASLALRKHIEEQARDLGGEA-FSRFMDQLYDRISGLLESND------------AAE 85 (1874)
Q Consensus 19 ~~~~~~~~~~~~~~L~s~~~~~~~aa~~l~~~v~~~~~~~~~~~-~~~~~~~l~~~i~~l~~s~~------------~~~ 85 (1874)
.+.--+.+..+..+|.+.+.+ + . .+.+. +. +-+++. ..-.-.-.++.+.+++++++ ..-
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~-~-~---~~~ll-~~--~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~ 98 (458)
T 3nmz_A 27 LGTKVEMVYSLLSMLGTHDKD-D-M---SRTLL-AM--SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98 (458)
T ss_dssp ------------------CCH-H-H---HHHHH-HH--HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHH
T ss_pred cCchHHHHHHHHHHhcCCCHH-H-H---HHHHH-HH--HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHH
Confidence 455566778888888665433 1 1 22222 11 222222 10111223555667776533 477
Q ss_pred hhhHHHHHhHhhccccCcchh-HH----------HHHHHHHHhhcccCC-ChH-----HHH-------HHHHHHHHHhhh
Q 000196 86 NLGALRAIDELIDVALGENAS-KV----------SKFSNYMRTVFEVKR-DRE-----ILV-------LASKVLGHLARA 141 (1874)
Q Consensus 86 r~~~i~ai~~li~~~~~~~~~-~~----------~~~~~~L~~~l~~~~-d~~-----v~~-------~aa~~lg~l~~~ 141 (1874)
|.-|.-|+.+++....+.... .. +.+.+.+..++.... +.+ |.. .|.++|++++..
T Consensus 99 ~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~ 178 (458)
T 3nmz_A 99 RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178 (458)
T ss_dssp HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC
Confidence 888999999998886443211 11 111222333343210 111 444 788999988653
Q ss_pred CCCcchHHHH-HHHHHHHhhhcC----------CCcchhHHHHHHHHHHHHhhcCc--cchhchHHHHHHHHHhhcCCch
Q 000196 142 GGAMTADEVE-FQVKMALDWLRG----------DRVEYRRFAAVLILKEMAENAST--VFNVHVAEFVDAIWVALRDPTL 208 (1874)
Q Consensus 142 ~g~~~~~~v~-~~~~~~~~~l~~----------~~~~~~r~aA~~~l~~la~~~p~--~~~~~l~~il~~i~~~l~D~~~ 208 (1874)
.. ....+++ .-++.++..|.. ..+...+..|+.+|..|+.+.+. .+.......+|.++..|+++++
T Consensus 179 ~e-~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~ 257 (458)
T 3nmz_A 179 EE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE 257 (458)
T ss_dssp HH-HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH
T ss_pred HH-HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCH
Confidence 10 1111111 134444444421 12234577888999999977542 1222245678999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHH---HHHHH
Q 000196 209 AVRERAVEALRACLRVIEKRETRWRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY---REVAE 284 (1874)
Q Consensus 209 ~VR~aA~~al~~~~~~i~~r~~~~~~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~---~~i~~ 284 (1874)
.|++.|+.||+.+... .+...+.... ...++.+..-|....+.+++..++.+|..|...+.+ ....+ ...++
T Consensus 258 ~v~~~A~~aL~nLs~~---~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~-nk~~I~~~~Gal~ 333 (458)
T 3nmz_A 258 DLQQVIASVLRNLSWR---ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE-NKADICAVDGALA 333 (458)
T ss_dssp HHHHHHHHHHHHHTSS---CCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHSTTHHH
T ss_pred HHHHHHHHHHHHHhcC---CCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH-HHHHHHHhcCcHH
Confidence 9999999999886421 0111222222 234556666543333467788888888888763322 12222 23556
Q ss_pred HHHHHhhcchh----HHHHHHHHHhHhHhhh--ChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhh
Q 000196 285 IVLRYLEHRDR----LVRLSITSLLPRIAHF--LRDRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALGEMAGALDGE 355 (1874)
Q Consensus 285 ~ll~~~~~~~~----~vr~~~~~~i~~la~~--~~~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~ 355 (1874)
.+...+.+.+. .+++.++.+|..++.+ ..++...... ...++.|...|++.+ .+..|..+|++++..-.+.
T Consensus 334 ~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~ 413 (458)
T 3nmz_A 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD 413 (458)
T ss_dssp HHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHH
Confidence 66677766543 4888899999998863 2222222112 356888888888765 3678899999987433322
Q ss_pred hhhhh--HHHHHHHHHhhcCCCCCCCchhHHHHHHHHHH
Q 000196 356 LFHYL--PTITSHLREAIAPRRGKPSLEALACVGNIARA 392 (1874)
Q Consensus 356 ~~p~l--~~i~~~l~~~L~~~~~~~~~~a~~~l~~l~~~ 392 (1874)
..++ ...++.+.+.+...+.+.+..+..++..|+..
T Consensus 414 -~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 414 -QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp -HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2222 23566666666544433345677777777654
No 86
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.91 E-value=0.011 Score=77.17 Aligned_cols=165 Identities=13% Similarity=0.027 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|..++..+.+.|+++.|...+.++.+..+. .+.+....+......|+ ..+|+..+++.+.....
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPE----------KAVTWLAVGIYYLCVNK---ISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------SHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCC
Confidence 445555555556666666666555555443221 23444445555555553 45566665554431100
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
. ...-..++.+|...|+ .++.++.|+++.+..|+...+|...|..+...
T Consensus 406 ~---------------~~~~~~l~~~~~~~g~-------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 454 (597)
T 2xpi_A 406 F---------------GPAWIGFAHSFAIEGE-------------HDQAISAYTTAARLFQGTHLPYLFLGMQHMQL--- 454 (597)
T ss_dssp C---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH---
T ss_pred C---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCccchHHHHHHHHHHHHc---
Confidence 0 0001122333333332 35566666666666666666666666554331
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
.-...|++.|-+++... +. .......+..+++..|..++..+.+++.+.
T Consensus 455 -----------g~~~~A~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 455 -----------GNILLANEYLQSSYALF-----QY-DPLLLNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp -----------TCHHHHHHHHHHHHHHC-----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHHHHhC-----CC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 12345666776666653 12 234455666777777777766666655543
No 87
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.86 E-value=0.00069 Score=85.75 Aligned_cols=356 Identities=14% Similarity=0.067 Sum_probs=188.5
Q ss_pred HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
++-++.|+..|... ++.+...++.+|..++....+ ....+ ...+|.+++.|... +..+++.|+++|+.++.
T Consensus 47 ~~~i~~LV~~L~s~-----~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~-~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 47 QPELPEVIAMLGFR-----LDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCHHHHHHHTTCS-----CHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCS-SHHHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHCCC-----CHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCC-CHHHHHHHHHHHHHHHc
Confidence 34456667777754 677888888888888753222 11112 24689999999865 67899999999999986
Q ss_pred hccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcccCccchhhhcccCCCcccccccCCCCCCCCCCcccc
Q 000196 760 STGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGALDPHAHKRNQQLSGSHGEVTRAASDSGQHIQPMDEF 839 (1874)
Q Consensus 760 ~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lgaldp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 839 (1874)
..+........--.-++.|+.+|++..+..++..+..+|..+...+..+....
T Consensus 120 ~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~--------------------------- 172 (584)
T 3l6x_A 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV--------------------------- 172 (584)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH---------------------------
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH---------------------------
Confidence 42111000000124577777788765567889998888887765333221111
Q ss_pred ccccCCCCCCCccchHHHHHHHHHHHc-----------------cCCCchhhHHHHHHHHHHHHHHhC--CCCCCCccch
Q 000196 840 PMDLWPSFATSEDYYSTVAINSLMRIL-----------------RDPSLASYHQKVVGSLMFIFKSMG--LGCVPYLPKV 900 (1874)
Q Consensus 840 ~~~l~~~~~~~~~~~~~~vi~~Ll~iL-----------------~d~s~~~~~~~v~~al~~i~~~~~--~~~~~~l~~i 900 (1874)
.-.++.|++.| ++.........+..+|.++...-. ...+--.+-+
T Consensus 173 ----------------~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gl 236 (584)
T 3l6x_A 173 ----------------DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGL 236 (584)
T ss_dssp ----------------HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTH
T ss_pred ----------------hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCc
Confidence 00122232322 111111222223333333321000 0000012345
Q ss_pred hHHHHHHHhcC------CcchhHHHHHHHHHHHHHHHHhHH---Hh-----------------------HHHHHHHHHHh
Q 000196 901 LPDLFHTVRTC------DDYLKDYITWKLGTLVSIVRQHIR---KY-----------------------LQELFSLISEL 948 (1874)
Q Consensus 901 lp~ll~~l~~~------~~~~~~~~~~~l~~lv~~~~~~i~---~y-----------------------~~~i~~~i~~~ 948 (1874)
++.++..++.+ +....+.++..|..|.......+. .| -+.+++.+...
T Consensus 237 i~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~L 316 (584)
T 3l6x_A 237 VDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316 (584)
T ss_dssp HHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHH
Confidence 66777766642 234556666666555543321110 01 12233333333
Q ss_pred hcCCCCCcccccccchhHHHHHHHHHHHh---hhhhhccc--hhhHHHHHHhcccccccCchhhHHHHHHHHHHHhcc--
Q 000196 949 WSSFSLPATNRTYRGLPVLHLVQQLCLAL---NDEFRTHL--PVILPCCIQVLSDAERCNDYTYVLDILHTLEVFGGT-- 1021 (1874)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~l~~i~~l~~~l---~~~f~~yl--~~llp~ll~~l~~~~~~~~~~~~~~il~~l~~~g~~-- 1021 (1874)
+..... +..+..+..++..++..- ...+...+ ...+|.|++.|...+ ..+...+..++..+...
T Consensus 317 L~~s~~-----~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~----~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 317 LKESKT-----PAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH----ERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp HHHCCC-----HHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSC----HHHHHHHHHHHHHHHTTCS
T ss_pred HccCCC-----HHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCC----HHHHHHHHHHHHHHhCChh
Confidence 322110 011123445555554321 12222222 356899999996532 23444455555544321
Q ss_pred hh-hhhhhhHHHHHHhhcCCC-------cHHHHHHHHHHHHhhccccc--ccch-hHhHHHHHHHHhCCC--CHHHHHHH
Q 000196 1022 LD-EHMHLLLPALIRLFKVDA-------PVDIRRAAIETLTRLIPRVQ--VTGH-ISSLVHHLKLVLDGK--NDELRKDA 1088 (1874)
Q Consensus 1022 ~~-~~~~~ilp~l~~~~~~~~-------~~~vr~~ai~~l~~l~~~~~--~~~~-~~~ii~~l~~~l~~~--~~~l~~~a 1088 (1874)
.. ..-.-.+|.+++++..+. ..++...|+.+|+.|+.... -... -...|+.|+..+.++ .+.+++.|
T Consensus 388 ~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~A 467 (584)
T 3l6x_A 388 NKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAA 467 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHH
Confidence 11 122457899999997541 46888999999998865411 1111 224677888899875 67899999
Q ss_pred HHHHHHHH
Q 000196 1089 VDALCCLA 1096 (1874)
Q Consensus 1089 l~~L~~l~ 1096 (1874)
..+|+.|.
T Consensus 468 a~vL~nl~ 475 (584)
T 3l6x_A 468 ALVLQTIW 475 (584)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999886
No 88
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.84 E-value=0.022 Score=68.30 Aligned_cols=324 Identities=12% Similarity=0.032 Sum_probs=192.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~ 1364 (1874)
.+|....+.|.|..|+.+++...... ++.....-.+..+|..+|+.+.+...++..... . .....+..+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56778888999999999988776532 334567788999999999999998888754321 1 112334468
Q ss_pred HHhcCHHHHHHHHHHHHhccCCC-chhHHhHhh------------HhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhH
Q 000196 1365 EKLQRWDDALKAYTNKASQASNP-HIVLEATLG------------RMRCLAALARWEELNNLCKEYW--TPAEPAARLEM 1429 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~-~~~~~~~~g------------~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~ 1429 (1874)
.+.|+|++|+..|++.+...+.. +. .+.... +-.++...|+|+.-....+... .+... ..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~ 156 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEE-KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA----EL 156 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccCh-HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch----HH
Confidence 89999999999999988654410 11 122222 2478888888877666555422 11122 22
Q ss_pred HHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHH-HHHHHHHHhcChhhhHHHHHHHHHHhHhh
Q 000196 1430 APMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTF-FRAVLLVRRGKVLESYERAYSNMVRVQQL 1508 (1874)
Q Consensus 1430 ~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~a~~~i~~~~~~esy~ray~~l~~lq~L 1508 (1874)
....+.+...+|+|+.-..+....-... ......+ ..+......++
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~la~~~~~~~~------------------ 203 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLK---------------SDNTEAFYKISTLYYQLGD------------------ 203 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------SCCHHHHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCC------------------
Confidence 2345667788888888776655432110 0000011 11111111111
Q ss_pred hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHH
Q 000196 1509 SELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQA 1588 (1874)
Q Consensus 1509 ~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a 1588 (1874)
.++.+++ +++=+...+.+...|...-.+. .....+..+....+.|+++.|
T Consensus 204 --~~~A~~~--------------------~~~a~~~~~~~~~~~~~~~~~~--------~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 204 --HELSLSE--------------------VRECLKLDQDHKRCFAHYKQVK--------KLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp --HHHHHHH--------------------HHHHHHHCTTCHHHHHHHHHHH--------HHHHHHHHHHHHHHTTCHHHH
T ss_pred --HHHHHHH--------------------HHHHHhhCccchHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHH
Confidence 1111111 1111111122222332222221 245566678889999999999
Q ss_pred HHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcch
Q 000196 1589 RSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNV 1668 (1874)
Q Consensus 1589 ~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1668 (1874)
...+.++....|... . .........+..+...|+ ..+|+..++..+.....
T Consensus 254 ~~~~~~~~~~~~~~~-~-----~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~-------------------- 304 (359)
T 3ieg_A 254 TSKYESVMKTEPSVA-E-----YTVRSKERICHCFSKDEK---PVEAIRICSEVLQMEPD-------------------- 304 (359)
T ss_dssp HHHHHHHHHHCCSSH-H-----HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHHHHHHhcCCCch-H-----HHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCcc--------------------
Confidence 999999887655310 0 001234456788888885 68999999987753110
Q ss_pred hhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1669 PLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1669 ~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
...++..+|...... ...++....|+++++++|+...+|..++.....
T Consensus 305 --~~~~~~~~~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 305 --NVNALKDRAEAYLIE------EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp --CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 123444555554443 246789999999999999999999988877554
No 89
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.77 E-value=0.011 Score=72.37 Aligned_cols=334 Identities=14% Similarity=0.129 Sum_probs=192.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++.+..+++.+.+|..+.+...... +......-.|..+|.+.|+.+.+...++.+... .+ .......+
T Consensus 38 ~l~~~~~~~~~~~~a~~~~~~a~~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSAHFSTLAIKQN------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 56777788889999998887766432 344567788999999999999999888754321 11 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
.+.|+|++|+..|++.+...++. ......+-.++..+|+|+.-....+... .+..... ....+.+....|+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQYNPDL---YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA----WSNLGCVFNAQGE 184 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHHCTTC---THHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHcCC
Confidence 89999999999999988765443 3445667788999999987665554321 1111111 1123456677888
Q ss_pred hhhHHHHHhhcCC-CCcchhhccccccccCCCCCchHHHH-HHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcC
Q 000196 1443 WDQMAEYVSRLDD-GDESKLRGLGNTAANGDGSSNGTFFR-AVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTL 1520 (1874)
Q Consensus 1443 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~-a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~ 1520 (1874)
++.-..+....-. ++ .....++. +......++ |..|.. .+++++.. .
T Consensus 185 ~~~A~~~~~~al~~~p----------------~~~~~~~~lg~~~~~~~~----~~~A~~---------~~~~al~~--~ 233 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDP----------------NFLDAYINLGNVLKEARI----FDRAVA---------AYLRALSL--S 233 (388)
T ss_dssp HHHHHHHHHHHHHHCT----------------TCHHHHHHHHHHHHTTTC----TTHHHH---------HHHHHHHH--C
T ss_pred HHHHHHHHHHHHhcCC----------------CcHHHHHHHHHHHHHcCC----HHHHHH---------HHHHHHhh--C
Confidence 8776655443211 00 00001100 111111111 111111 11112111 1
Q ss_pred CCCCCchhhHHHHHHHHHHHH--hhhccCCHHHHHHHHHHHHhh-cCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 000196 1521 PVGNPVAEGRRAIIRNMWTER--IQGTKRNVEVWQALLAVRALV-LPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQ 1597 (1874)
Q Consensus 1521 ~~~~~~~~~~~~~l~~~W~~R--l~~~~~~~~~w~~iL~~R~~v-l~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~ 1597 (1874)
|+. . ..|... ......+++.=.. ..+..+ +.| ++...|..++.+..+.|+++.|...+.++..
T Consensus 234 p~~----~-------~~~~~l~~~~~~~g~~~~A~~--~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 234 PNH----A-------VVHGNLACVYYEQGLIDLAID--TYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp TTC----H-------HHHHHHHHHHHHTTCHHHHHH--HHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCC----H-------HHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 110 0 011110 0001112211111 111111 223 3467889999999999999999999998887
Q ss_pred CCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHH
Q 000196 1598 YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLK 1677 (1874)
Q Consensus 1598 ~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~ 1677 (1874)
..|. .+......+.++...|+ ..+|+..+++.+... + -.+..+..
T Consensus 300 ~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~---p-------------------~~~~~~~~ 344 (388)
T 1w3b_A 300 LCPT----------HADSLNNLANIKREQGN---IEEAVRLYRKALEVF---P-------------------EFAAAHSN 344 (388)
T ss_dssp HCTT----------CHHHHHHHHHHHHTTTC---HHHHHHHHHHHTTSC---T-------------------TCHHHHHH
T ss_pred hCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---C-------------------CcHHHHHH
Confidence 6542 35666677777777784 678988888754311 0 01223444
Q ss_pred HhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1678 LGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1678 ~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
+|.-.... ...++....|+++++.+|+...+|..+|...
T Consensus 345 l~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 345 LASVLQQQ------GKLQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHHTT------TCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 44443332 2357888999999999999999999888754
No 90
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.72 E-value=0.0044 Score=76.56 Aligned_cols=221 Identities=9% Similarity=-0.012 Sum_probs=142.0
Q ss_pred ChHHHHHHHHHHHHHhhhCCCcchHHH---HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch--HHHHHH
Q 000196 124 DREILVLASKVLGHLARAGGAMTADEV---EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV--AEFVDA 198 (1874)
Q Consensus 124 d~~v~~~aa~~lg~l~~~~g~~~~~~v---~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l--~~il~~ 198 (1874)
+..+.+.|+++|..|+.... .....+ ...++.+++.|.+ .+...+..|+.+|+.|+.+........+ ...+|.
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~-~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~ 290 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDV-ANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCc-ccHHHHHHcCCcHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHH
Confidence 36789999999999987421 122222 2347888888864 4456788899999999875211111122 246777
Q ss_pred HHHhh-cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHhhccCCCCh---hHHHHHHHHHHHHHH---
Q 000196 199 IWVAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPV---HSIHGSLLAVGELLR--- 269 (1874)
Q Consensus 199 i~~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~i~~~~~~~l~~~~~~---~~~~~al~~l~~ll~--- 269 (1874)
++..| +..++.+++.|+.||..+...- ...+.... ...++.+..-|...++. +++..|+.+|..|..
T Consensus 291 LV~lLl~s~~~~v~~~A~~aL~nLs~~~----~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 291 LMECALEVKKESTLKSVLSALWNLSAHC----TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHHHHHC----HHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCC----HHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 77764 5678899999999988876421 11222332 34566666666554322 467777777777764
Q ss_pred cchhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHH
Q 000196 270 NTGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA--ERDSGFIA 344 (1874)
Q Consensus 270 ~~~~~~~~~~~--~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~a 344 (1874)
...+. ...+. ..++.++..+.+++..+++.++.+|..++..+++. ..... ...++.|...|+..+ .|..|..+
T Consensus 367 ~~~~~-~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~A 444 (458)
T 3nmz_A 367 TNEDH-RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 444 (458)
T ss_dssp TCHHH-HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHH-HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred CCHHH-HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 22222 12221 25667888888999999999999999998655543 22112 457888888887654 36788899
Q ss_pred HHHHHhhc
Q 000196 345 LGEMAGAL 352 (1874)
Q Consensus 345 lg~la~~v 352 (1874)
|.+++..-
T Consensus 445 L~nL~~~~ 452 (458)
T 3nmz_A 445 LRNLMANR 452 (458)
T ss_dssp HHHHHTCC
T ss_pred HHHHHcCC
Confidence 99887654
No 91
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.70 E-value=0.00094 Score=74.98 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=122.9
Q ss_pred CChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhc---CCCcchhHHHHHHHHHHHHhhcC---ccchhc-hHHH
Q 000196 123 RDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLR---GDRVEYRRFAAVLILKEMAENAS---TVFNVH-VAEF 195 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~---~~~~~~~r~aA~~~l~~la~~~p---~~~~~~-l~~i 195 (1874)
.|..-+..|.+.|-..... .++-+-..++.++.|+. -+++.+.=..++.+|..+..... ..|..| ...+
T Consensus 58 ~d~k~~~~ale~L~~~l~~----~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADT----SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHH----CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhh----ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4666666566655554433 23333444556688874 34454555677888877765432 235555 5889
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhh
Q 000196 196 VDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFM 275 (1874)
Q Consensus 196 l~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~ 275 (1874)
+|.++.-++|++..||+++...+..+..+.. ...+++.+..|+.+.+ |++|.+++..++.++...|-.
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~----------~~~v~~~l~~g~ksKN-~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG----------PLKMTPMLLDALKSKN-ARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC----------HHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHCSG-
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHhcCCC-
Confidence 9999999999999999999998877655422 3467777888998775 999999999999999855532
Q ss_pred HHHHHHHH---HHHHHHhhcchhHHHHHHHHHhHhHhhhChhhH
Q 000196 276 MSRYREVA---EIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 276 ~~~~~~i~---~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f 316 (1874)
+ ...+ ..+..++++++..||.+|++++..+-...++.+
T Consensus 202 -~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 202 -P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp -G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred -c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 1 2234 667778899999999999999887665555554
No 92
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.66 E-value=0.069 Score=66.56 Aligned_cols=139 Identities=13% Similarity=0.072 Sum_probs=103.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHH------------HHHHHHHHhcCCcchHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVM------------YAYLKYQWSLGEDLKRKE 1634 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~------------~e~~k~lw~~g~~~~~~~ 1634 (1874)
.+...|..++.+..+.|+++.|...+.++.+..|. .+... +..+..+...|+ ..+
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~ 275 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD----------HKRCFAHYKQVKKLNKLIESAEELIRDGR---YTD 275 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHHHHHHHHHHHTC---HHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------hHHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHH
Confidence 34688999999999999999999999998876553 12222 223777778884 689
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000196 1635 AFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1874)
Q Consensus 1635 Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1874)
|+..++..+.... .+......++..+|...... ...++.+..|+++++.+|+...+
T Consensus 276 A~~~~~~~l~~~p------------------~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~p~~~~~ 331 (450)
T 2y4t_A 276 ATSKYESVMKTEP------------------SIAEYTVRSKERICHCFSKD------EKPVEAIRVCSEVLQMEPDNVNA 331 (450)
T ss_dssp HHHHHHHHHHHCC------------------SSHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCC------------------cchHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCcccHHH
Confidence 9999988775311 12344566777777776654 35789999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
|..+|..+... .-...|+..|-+++.+.
T Consensus 332 ~~~l~~~~~~~--------------~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 332 LKDRAEAYLIE--------------EMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHh--------------cCHHHHHHHHHHHHHhC
Confidence 99999887541 12347888888888874
No 93
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.63 E-value=0.0066 Score=81.99 Aligned_cols=301 Identities=14% Similarity=0.140 Sum_probs=172.2
Q ss_pred HHHhhhCCCCCCCCHHHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc
Q 000196 1274 AEFMEHDEKPLPIDIRLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK 1353 (1874)
Q Consensus 1274 ~e~m~~~~~~l~i~~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~ 1353 (1874)
.+|.++-++ .+...+|.++...+.|..|..+.|..- ...+..+. ++..++..|-+.-.......
T Consensus 1041 ~eyI~kLd~---~d~~eIA~Iai~lglyEEAf~IYkKa~----------~~~~A~~V---Lie~i~nldrAiE~Aervn~ 1104 (1630)
T 1xi4_A 1041 MEYINRLDN---YDAPDIANIAISNELFEEAFAIFRKFD----------VNTSAVQV---LIEHIGNLDRAYEFAERCNE 1104 (1630)
T ss_pred HHHHHHhhh---ccHHHHHHHHHhCCCHHHHHHHHHHcC----------CHHHHHHH---HHHHHhhHHHHHHHHHhcCC
Confidence 344444443 456789999999999999987776531 11222233 34477777777766653322
Q ss_pred hhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCC-ChHHHHhHHHH
Q 000196 1354 ELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPA-EPAARLEMAPM 1432 (1874)
Q Consensus 1354 ~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~-~~~~~~~~~~~ 1432 (1874)
..-.-..+..+++.|+|++|..+|++. .+ .+.......|+.++|+|+++..+.+.--... ++. +-..
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA----dD----~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~----Idt~ 1172 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKARESY----VETE 1172 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc----CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc----ccHH
Confidence 111223345589999999999999764 23 3456779999999999999887765321111 111 1123
Q ss_pred HHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHH
Q 000196 1433 AANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELE 1512 (1874)
Q Consensus 1433 ~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~Ele 1512 (1874)
.+.+..++++++.++.|++... ...+..+|..+.+ .+.+..|...-.+. ..|.+.-..+++ +.|++
T Consensus 1173 LafaYAKl~rleele~fI~~~n---~ad~~~iGd~le~-----eg~YeeA~~~Y~kA---~ny~rLA~tLvk---Lge~q 1238 (1630)
T 1xi4_A 1173 LIFALAKTNRLAELEEFINGPN---NAHIQQVGDRCYD-----EKMYDAAKLLYNNV---SNFGRLASTLVH---LGEYQ 1238 (1630)
T ss_pred HHHHHHhhcCHHHHHHHHhCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHhh---hHHHHHHHHHHH---hCCHH
Confidence 5667888899999999875322 1222223322211 12333333322221 234443334333 46788
Q ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHH
Q 000196 1513 EVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTL 1592 (1874)
Q Consensus 1513 Eii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L 1592 (1874)
++++....... .++|.+--..|-+.-+.-.-......++ .+.+..-..++.-.+.|+++.|.+.+
T Consensus 1239 ~AIEaarKA~n-----------~~aWkev~~acve~~Ef~LA~~cgl~Ii----v~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1239 AAVDGARKANS-----------TRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred HHHHHHHHhCC-----------HHHHHHHHHHHhhhhHHHHHHHHHHhhh----cCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88875532211 2677654333321111111111111122 23444457777889999999999999
Q ss_pred HHHhcCCCCCCc-----ccccCCCChHHHHHHHHHHHhcCCcch
Q 000196 1593 VKLLQYDPETSH-----ENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1874)
Q Consensus 1593 ~~l~~~~~~~~~-----~~~~~~~~~~v~~e~~k~lw~~g~~~~ 1631 (1874)
.+.+++++.-.. ..+...-.|.-.+|++|+.|.+++..+
T Consensus 1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 988877643100 011123468888999999999987543
No 94
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.62 E-value=0.078 Score=66.05 Aligned_cols=325 Identities=12% Similarity=0.042 Sum_probs=184.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~ 1364 (1874)
.++....+++.|..|+.+++...... ++.....-.+..+|..+|+.+.+.-.+..+... . ........|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 56777888899999998888766432 334567778899999999999998888754321 1 111234458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhH------------hhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHhHH
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEAT------------LGRMRCLAALARWEELNNLCKEYWT--PAEPAARLEMA 1430 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~------------~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~~~ 1430 (1874)
.+.|++++|+..|++.+...++.....+.. ...-.++...|+|+.-....+.... +... ...
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~ 180 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA----ELR 180 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHH
Confidence 899999999999998876543321000111 1224456777777665555443211 1111 112
Q ss_pred HHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHH-HhHhhh
Q 000196 1431 PMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMV-RVQQLS 1509 (1874)
Q Consensus 1431 ~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~-~lq~L~ 1509 (1874)
...+.+...+|+|+.-.++....- ...... ..++..+. -.....
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~------------------------------~~~~~~-----~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAAS------------------------------KLKNDN-----TEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHH------------------------------HHHCSC-----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH------------------------------HhCCCC-----HHHHHHHHHHHHHcC
Confidence 234456666777766554433221 110000 00000000 000111
Q ss_pred hHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHH
Q 000196 1510 ELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQAR 1589 (1874)
Q Consensus 1510 EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~ 1589 (1874)
+.++.+.+ +++=+...+.+...|..+-.++ ....++..+..+.+.|+++.|.
T Consensus 226 ~~~~A~~~--------------------~~~~~~~~p~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 226 DHELSLSE--------------------VRECLKLDQDHKRCFAHYKQVK--------KLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp CHHHHHHH--------------------HHHHHHHCTTCHHHHHHHHHHH--------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHH--------------------HHHHHHhCCChHHHHHHHHHHH--------HHHHHHHHHHHHHHcCCHHHHH
Confidence 12222111 1111111222333333221111 1345677799999999999999
Q ss_pred HHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchh
Q 000196 1590 STLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVP 1669 (1874)
Q Consensus 1590 ~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1669 (1874)
..+.++....|.. +. .........+..++..|+ ..+|+..++..+.....
T Consensus 278 ~~~~~~l~~~p~~-~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~--------------------- 327 (450)
T 2y4t_A 278 SKYESVMKTEPSI-AE-----YTVRSKERICHCFSKDEK---PVEAIRVCSEVLQMEPD--------------------- 327 (450)
T ss_dssp HHHHHHHHHCCSS-HH-----HHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHCTT---------------------
T ss_pred HHHHHHHhcCCcc-hH-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcc---------------------
Confidence 9999988765531 00 002345666778888885 68999999887643110
Q ss_pred hHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1670 LIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1670 l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
.+.++..+|.-.... ...++....|+++++++|+...+|..++.....
T Consensus 328 -~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 328 -NVNALKDRAEAYLIE------EMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp -CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 123344444444433 345788999999999999999999998876554
No 95
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.59 E-value=0.027 Score=72.19 Aligned_cols=413 Identities=14% Similarity=0.053 Sum_probs=206.5
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHH
Q 000196 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESW 1363 (1874)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~ 1363 (1874)
..+|....+.+.|.+|+.+++...... ++.......+..+|..+|+.+.+...++.+-.. .+ ....+..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 356888888999999998888776532 344567778888899999988888877754321 11 1123345
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchh-HHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIV-LEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~-~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
|.++|+|++|+..|+ .+...++.... .........+-.+++.++..............+. .......+..++
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~ 175 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS------NTSLASFFGIFD 175 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC------HHHHHHHHHTSC
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch------HhHHHHHHHhcC
Confidence 788899999999885 55433222110 0011111112222222222211110000000010 111222222222
Q ss_pred hhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCC
Q 000196 1443 WDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPV 1522 (1874)
Q Consensus 1443 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~ 1522 (1874)
-+............ ......+..++..+.... .+.|..+..... +.+.-++++++. .|.
T Consensus 176 ~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~-~~~~~~a~~~~~--~A~~~~~~~l~~--~p~ 234 (537)
T 3fp2_A 176 SHLEVSSVNTSSNY----------------DTAYALLSDALQRLYSAT-DEGYLVANDLLT--KSTDMYHSLLSA--NTV 234 (537)
T ss_dssp HHHHHHTSCCCCSS----------------CSSHHHHHHHHHHHHTCS-HHHHHHHHHHHH--HHHHHHHHHHC----CC
T ss_pred hHHHHHHHhhcccc----------------ccHHHHHHHHHHHHHHhh-hhhhHHHHHHHH--HHHHHHHHHHHH--CCC
Confidence 22211111100000 011112333333333221 112221111110 011112222221 111
Q ss_pred CCCchhhHHHHHHHHHHHH--hhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 000196 1523 GNPVAEGRRAIIRNMWTER--IQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDP 1600 (1874)
Q Consensus 1523 ~~~~~~~~~~~l~~~W~~R--l~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~ 1600 (1874)
. ......+...|..+ +.....+++.-...+.- .+-..|. ...|...+.+..+.|+++.|...+.++...+|
T Consensus 235 ~----~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~-~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 307 (537)
T 3fp2_A 235 D----DPLRENAALALCYTGIFHFLKNNLLDAQVLLQE-SINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307 (537)
T ss_dssp C----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-HHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT
T ss_pred c----chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC
Confidence 1 11111122223221 11122333322222211 1112344 78999999999999999999999999887655
Q ss_pred CCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhh
Q 000196 1601 ETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGS 1680 (1874)
Q Consensus 1601 ~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~ 1680 (1874)
. .+.+.+..+.+++..|+ ..+|+..+++.+..... . ..++..+|.
T Consensus 308 ~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~------------------~----~~~~~~la~ 352 (537)
T 3fp2_A 308 E----------YPPTYYHRGQMYFILQD---YKNAKEDFQKAQSLNPE------------------N----VYPYIQLAC 352 (537)
T ss_dssp T----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT------------------C----SHHHHHHHH
T ss_pred C----------CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhCCC------------------C----HHHHHHHHH
Confidence 2 46778888999999995 68999999987653211 0 122334444
Q ss_pred hHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccC
Q 000196 1681 WKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAK 1760 (1874)
Q Consensus 1681 w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~ 1760 (1874)
..... ...++....|+++.+.+|+...+|..+|..+... .-...|++.|-+++...+...
T Consensus 353 ~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 353 LLYKQ------GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR--------------GDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHT------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHcCCcch
Confidence 44332 2457888999999999999999999998776541 123467788888777654322
Q ss_pred CCcchHHhHHHHHHHHHhc----------CCcHHHHHHHHhcccCCC
Q 000196 1761 GVDDSLQDILRLLTLWFNH----------GATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1761 ~~~~~~q~~~RlLtLwf~~----------g~~~~v~~~~~~~~~~ip 1797 (1874)
.....+.....+-.++... |+..+....+++.+..-|
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC
Confidence 2222222233444555555 666666666666654444
No 96
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.53 E-value=0.021 Score=73.36 Aligned_cols=140 Identities=14% Similarity=0.084 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++....|. .+.+....+.++...|+ ..+|+..++..+....
T Consensus 343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT----------LPEVPTFFAEILTDRGD---FDTAIKQYDIAKRLEE 409 (537)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhCC---HHHHHHHHHHHHHcCC
Confidence 3577888999999999999999999998877553 35677788889988885 6899999998765432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHH----------hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKL----------GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHS 1717 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~----------g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~ 1717 (1874)
...... .........+.++... |+| ++.+..|+++++.+|+...+|..
T Consensus 410 ~~~~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~A~~~~~~a~~~~p~~~~~~~~ 467 (537)
T 3fp2_A 410 VQEKIH---------VGIGPLIGKATILARQSSQDPTQLDEEKF-------------NAAIKLLTKACELDPRSEQAKIG 467 (537)
T ss_dssp HCSSCS---------STTHHHHHHHHHHHHHHTC----CCHHHH-------------HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhH---------HHHHHHHHHHHHHHHHhhccchhhhHhHH-------------HHHHHHHHHHHHhCCCCHHHHHH
Confidence 111000 0000012235666666 554 67889999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1718 WALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1718 wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
+|..+... + -...|++.|-+++.+.
T Consensus 468 l~~~~~~~-------g-------~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 468 LAQLKLQM-------E-------KIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHT-------T-------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHh-------c-------cHHHHHHHHHHHHHhC
Confidence 98876541 1 2347888898888875
No 97
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.51 E-value=0.01 Score=70.40 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=87.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|..++.+..+.|+++.|...+.++....+..... ......+.+....+..+...|+ ..+|+..+++.+....
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE-VTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIP 267 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS-CTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc-ccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCc
Confidence 46778889999999999999999998887654322110 0011235678888999999995 6899999998775321
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.. ..-...++.++...|+| ++....|+++.+++|+...+|..+|....
T Consensus 268 ~~---------------~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 268 QN---------------ASTYSAIGYIHSLMGNF-------------ENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp TC---------------SHHHHHHHHHHHHHTCH-------------HHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred cc---------------hHHHHHHHHHHHHhccH-------------HHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 10 11123356666655554 67889999999999999999999887643
No 98
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.51 E-value=0.0013 Score=73.87 Aligned_cols=186 Identities=10% Similarity=-0.007 Sum_probs=137.4
Q ss_pred CcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 000196 165 RVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEAT 244 (1874)
Q Consensus 165 ~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~ 244 (1874)
+++..|.+|+..|....+..|+.+...++-++.-+.-.+.|+++.|-..+.+.+..++..+.+++.....+-...++|.+
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~L 137 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYL 137 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 56678999999998888877877777777777755555679999999999999999888877655444445567889999
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHH
Q 000196 245 QDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKIC 324 (1874)
Q Consensus 245 ~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~ 324 (1874)
...++++. ..+|.++-.++..+....+ ...+.+.++..+.++|..+|..++..+..+-.-.+..+ ...
T Consensus 138 veKlGd~k-~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~-----~~~ 205 (266)
T 2of3_A 138 LLKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP-----LKS 205 (266)
T ss_dssp HHGGGCSS-HHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG-----GGG
T ss_pred HHHhCCCh-HHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc-----ccc
Confidence 99999885 4667777777766654221 12355667777899999999999988887654222222 223
Q ss_pred H---HHHHHhhcCCC--CcchHHHHHHHHHhhchhhhhhhhHH
Q 000196 325 M---NHILTVLRIPA--ERDSGFIALGEMAGALDGELFHYLPT 362 (1874)
Q Consensus 325 ~---~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~~p~l~~ 362 (1874)
+ +.+...+.+.+ .|.+|+.|+..+-..+|+.+..|++.
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~ 248 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCC
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 5 66777776544 69999999999999999987776643
No 99
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.50 E-value=0.48 Score=64.10 Aligned_cols=187 Identities=12% Similarity=0.067 Sum_probs=106.0
Q ss_pred hHHHHHHHhCCCCH-HHHHH-HHHHHHhhhcCCcCccchHHHHHHHHHHHHHhh-CCCChHhHHHHHHHHHHHHH-hCcc
Q 000196 600 CLSAIFAALNDEDF-DVREY-AISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQ-SSADNKCREESAKLLGCLIR-NCER 675 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~-~VR~~-a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~-~~~~~~~r~~a~~~L~~l~~-~~~~ 675 (1874)
+++.++...++++. ++... |..++..++... +.+.....++..+..+.. + .++ .|..++..+..+.- +.--
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~---~~~~~~~~~l~~l~~~~~~s-~sW-~R~~~L~~lq~~~f~n~f~ 835 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP---IRKNHVAAIVDYVCSSNVAL-SSN-QTKLQLAFIQHFLSAELLQ 835 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC---CCHHHHHHHHHHSSCTTTTS-CSS-SHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcC-CcH-HHHHHHHHHHHHHHHHHHH
Confidence 45555555555543 55555 666677666433 122222222233322222 3 567 88888777766653 3322
Q ss_pred ccccchHHHHHHHHHHhhccCCCCCC-hhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhc-----------Ccc
Q 000196 676 LIRPYIAPIHKALVARLLEGTGINAN-NGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLD-----------GAA 743 (1874)
Q Consensus 676 ~~~py~~~il~~ll~~l~~~~~~~~~-~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d-----------~~~ 743 (1874)
.-..-...|...++..|.|+ . .+|+..+..+|+.+....+. .....+++..+.+.+.. ..+
T Consensus 836 l~~~~~~~i~~~v~~~L~D~-----q~~EVRe~Aa~tLsgll~c~~~--~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~ 908 (997)
T 1vsy_5 836 LTEEEKNKILEFVVSNLYNE-----QFVEVRVRAASILSDIVHNWKE--EQPLLSLIERFAKGLDVNKYTSKERQKLSKT 908 (997)
T ss_dssp SCTTHHHHTHHHHTTTTTCS-----SCHHHHHHHHHHHHHHHHSCCS--HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHHHHHHcCCc--hhhHHHHHHHHHHHHhhcccccccccccchH
Confidence 22222356777888888875 7 88999999999988765412 01112233333322211 011
Q ss_pred hhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 744 VTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 744 ~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
..+|..|+.+||.++.+.++.+-|..-.|+++..|.+.+.+ +..++..+=++++.
T Consensus 909 ~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~--~~~i~~tvk~tlse 963 (997)
T 1vsy_5 909 DIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWART--SGMTGNAAKNTISE 963 (997)
T ss_dssp CHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSS--CSSHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCC--CCchHHHHHHHHHH
Confidence 25788999999999999877653233456666666555544 33477777777766
No 100
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.49 E-value=0.082 Score=67.14 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=99.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+.+..+.|+++.|...+.++....|. .+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE----------APEVPNFFAEILTDKND---FDKALKQYDLAIELE 402 (514)
T ss_dssp SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT----------CSHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhh
Confidence 35678999999999999999999999988776542 35677788888888885 688999998876543
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhh---cCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRA---LPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~---~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.... .....+.++..+|..... . ...++....|+++++.+|+...+|..+|..+.
T Consensus 403 ~~~~----------------~~~~~~~~~~~l~~~~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 403 NKLD----------------GIYVGIAPLVGKATLLTRNPTV------ENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460 (514)
T ss_dssp HTSS----------------SCSSCSHHHHHHHHHHHTSCCT------THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hccc----------------hHHHHHHHHHHHHHHHhhhhhc------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 2110 000112234444444433 2 24578899999999999999999999887755
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.. + -...|+..|-+++.+.
T Consensus 461 ~~-------g-------~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 461 QQ-------E-------DIDEAITLFEESADLA 479 (514)
T ss_dssp HT-------T-------CHHHHHHHHHHHHHHC
T ss_pred Hh-------c-------CHHHHHHHHHHHHHhc
Confidence 31 1 2346888888888875
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00096 Score=77.68 Aligned_cols=193 Identities=13% Similarity=0.062 Sum_probs=121.2
Q ss_pred HhhhcCCChhhhhhHHHHHhHhhccccCcc--h---hHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHH
Q 000196 75 SGLLESNDAAENLGALRAIDELIDVALGEN--A---SKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1874)
Q Consensus 75 ~~l~~s~~~~~r~~~i~ai~~li~~~~~~~--~---~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~ 149 (1874)
.+-+.|++|..|..|+..+..++....... . ....++...+...+. +.+..|...|.+++..++...|...
T Consensus 15 ~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~--- 90 (278)
T 4ffb_C 15 EERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSS--- 90 (278)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC------
T ss_pred HHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhh---
Confidence 355789999999999999888875421110 0 001112223334432 2344555555555555444311100
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHH-hhcCCchhHHHHHHHHHHHHHHHHhhc
Q 000196 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWV-ALRDPTLAVRERAVEALRACLRVIEKR 228 (1874)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~-~l~D~~~~VR~aA~~al~~~~~~i~~r 228 (1874)
+....+..++..++|.++. ++.|+++.+|..|.+++-.++....
T Consensus 91 ---------------------------------~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-- 135 (278)
T 4ffb_C 91 ---------------------------------LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-- 135 (278)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--
T ss_pred ---------------------------------cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--
Confidence 0011234566778887775 6899999999999988876654321
Q ss_pred chhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchh-h--hHHHHHHHHHHHHHHhhcchhHHHHHHHHHh
Q 000196 229 ETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGE-F--MMSRYREVAEIVLRYLEHRDRLVRLSITSLL 305 (1874)
Q Consensus 229 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~-~--~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i 305 (1874)
....+++.+..++...+ +.++.+++.+|..++...|. . ..+.+..++..+...++++++.||.++..++
T Consensus 136 -------~~~~~~e~l~~~l~~Kn-pkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 136 -------SITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp -------SSHHHHHHHGGGGGCSC-HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11345677777887764 78899999999999885432 1 3345667777888889999999999999999
Q ss_pred HhHhhhChh
Q 000196 306 PRIAHFLRD 314 (1874)
Q Consensus 306 ~~la~~~~~ 314 (1874)
..+-.+.++
T Consensus 208 ~~ly~~~G~ 216 (278)
T 4ffb_C 208 VEIYKVTGN 216 (278)
T ss_dssp HHHHTC---
T ss_pred HHHHHHhCc
Confidence 988766553
No 102
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.48 E-value=0.16 Score=60.49 Aligned_cols=139 Identities=13% Similarity=0.074 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHH------------HHHHHHHHHhcCCcchHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQV------------MYAYLKYQWSLGEDLKRKE 1634 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v------------~~e~~k~lw~~g~~~~~~~ 1634 (1874)
++...|...+.+..+.|+++.|...+.++....|.. +.. .+..+..+...|+ ..+
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~ 252 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH----------KRCFAHYKQVKKLNKLIESAEELIRDGR---YTD 252 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----------HHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc----------hHHHHHHHHHHHHHHHHHHHHHHHHcCC---HHH
Confidence 457899999999999999999999999988775531 221 1233566777774 689
Q ss_pred HHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000196 1635 AFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1874)
Q Consensus 1635 Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1874)
|+..++..+.... .+.....+.+..+|...... ...++.+..|.++++.+|+...+
T Consensus 253 A~~~~~~~~~~~~------------------~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~ 308 (359)
T 3ieg_A 253 ATSKYESVMKTEP------------------SVAEYTVRSKERICHCFSKD------EKPVEAIRICSEVLQMEPDNVNA 308 (359)
T ss_dssp HHHHHHHHHHHCC------------------SSHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCC------------------CchHHHHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCcccHHH
Confidence 9999988765321 12334556666667666554 35788999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
|+..|..+... .-...|+..|-+++.+.
T Consensus 309 ~~~~~~~~~~~--------------g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 309 LKDRAEAYLIE--------------EMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHhcC
Confidence 99999876541 12347888999988875
No 103
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.42 E-value=0.0071 Score=72.33 Aligned_cols=228 Identities=11% Similarity=0.037 Sum_probs=144.8
Q ss_pred hhhhhhHHHHHhHhhccccCcchhHH---HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcc-hHHHH-HHHHHH
Q 000196 83 AAENLGALRAIDELIDVALGENASKV---SKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT-ADEVE-FQVKMA 157 (1874)
Q Consensus 83 ~~~r~~~i~ai~~li~~~~~~~~~~~---~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~-~~~v~-~~~~~~ 157 (1874)
...|..|..+|..|.... .+....+ .-+.+.|..++. +++.++...|+++|+.|+...+... ..+++ .-++.+
T Consensus 98 ~~~q~~Aa~aL~nLa~~~-~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGD-VANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHTSSC-HHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 445777888888886442 1122223 123667777775 5689999999999999986311111 12222 246666
Q ss_pred HhhhcCCCcchhHHHHHHHHHHHHhhcCccchhc--hHHHHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHhhcchh
Q 000196 158 LDWLRGDRVEYRRFAAVLILKEMAENASTVFNVH--VAEFVDAIWVALRDPTL----AVRERAVEALRACLRVIEKRETR 231 (1874)
Q Consensus 158 ~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~--l~~il~~i~~~l~D~~~----~VR~aA~~al~~~~~~i~~r~~~ 231 (1874)
++.|....+...+..|+.+|..|+.+++..=... ....+|.++..|+++++ .|++.|+.+|+.+...+...+ .
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~-~ 254 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE-D 254 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCH-H
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCH-H
Confidence 6665433445567778888889987554321111 24678888888887665 489999999998765433111 1
Q ss_pred hHHHHH-HHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhH
Q 000196 232 WRVQWY-YRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRI 308 (1874)
Q Consensus 232 ~~~~~~-~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~--~i~~~ll~~~~~~~~~vr~~~~~~i~~l 308 (1874)
.+.... ...++.+..-|.+.+ .+++..|+.+|..+.....+.. ..+. ..++.++.+++++++.+|+.++.+|..|
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~-~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLSARNPKDQ-EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHH-HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCC-hHHHHHHHHHHHHHhCCCHHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 222221 235677777777654 5778888888888764322221 1121 2466777778889999999999999999
Q ss_pred hhhChhh
Q 000196 309 AHFLRDR 315 (1874)
Q Consensus 309 a~~~~~~ 315 (1874)
+...+..
T Consensus 333 ~~~~~~~ 339 (354)
T 3nmw_A 333 MANRPAK 339 (354)
T ss_dssp HTTCCGG
T ss_pred HcCCHHH
Confidence 9877754
No 104
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.36 E-value=0.0066 Score=72.63 Aligned_cols=223 Identities=10% Similarity=-0.017 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHHHhhhCCCcchHHH--HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHH
Q 000196 125 REILVLASKVLGHLARAGGAMTADEV--EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIW 200 (1874)
Q Consensus 125 ~~v~~~aa~~lg~l~~~~g~~~~~~v--~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l--~~il~~i~ 200 (1874)
.++.+.|+++|..|+.........+. ...++.+++.|.+ .+...+..|+.+|+.|+.+........+ ...+|.++
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 67899999999999864211122221 2348888888864 4456788899999999876221111122 24577777
Q ss_pred Hhh-cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHH--HHHHHHHHhhccCCCCh---hHHHHHHHHHHHHHH---cc
Q 000196 201 VAL-RDPTLAVRERAVEALRACLRVIEKRETRWRVQWY--YRMFEATQDGLGRNAPV---HSIHGSLLAVGELLR---NT 271 (1874)
Q Consensus 201 ~~l-~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~--~~i~~~~~~~l~~~~~~---~~~~~al~~l~~ll~---~~ 271 (1874)
..| +.+++.+++.|+.||..+... ....+.... ...++.+..-+...++. +++..|+.+|..|.. ..
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~----~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAH----CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTT----CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcc----ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 764 567889999999998876541 111223332 34666666666554322 467777777777764 22
Q ss_pred hhhhHHHHH--HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcCCC--CcchHHHHHH
Q 000196 272 GEFMMSRYR--EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRIPA--ERDSGFIALG 346 (1874)
Q Consensus 272 ~~~~~~~~~--~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~~~--~R~~a~~alg 346 (1874)
.+. ...+. ..++.++..+.+++..+++.++.+|..++..+++. ..... ...++.|...|+..+ .|..|..+|.
T Consensus 253 ~~~-~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~-~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 253 EDH-RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp HHH-HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH-HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHH-HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHH-HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 221 12221 25677888888999999999999999998655432 11112 356888888887654 3678999999
Q ss_pred HHHhhchh
Q 000196 347 EMAGALDG 354 (1874)
Q Consensus 347 ~la~~v~~ 354 (1874)
+++..-+.
T Consensus 331 nL~~~~~~ 338 (354)
T 3nmw_A 331 NLMANRPA 338 (354)
T ss_dssp HHHTTCCG
T ss_pred HHHcCCHH
Confidence 98876554
No 105
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.063 Score=63.38 Aligned_cols=267 Identities=14% Similarity=0.048 Sum_probs=160.8
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC--CCChHHHHhHHHHHHHHHHHc
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT--PAEPAARLEMAPMAANAAWNM 1440 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~--~~~~~~~~~~~~~~a~aaw~l 1440 (1874)
.+-..|+|++|+..|++.+...++. ......+..|+..+|+|+......+.... +.+.. .....+.+.+..
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 103 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV----SWFAVGCYYLMV 103 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----HHHHHHHHHHHh
Confidence 3556699999999999988765443 23456688999999999887766654321 11111 223445677788
Q ss_pred C-ChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhc
Q 000196 1441 G-EWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCT 1519 (1874)
Q Consensus 1441 ~-~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~ 1519 (1874)
| +|+.-.++....-... ... ...+..+-.+ .....+.++.+++
T Consensus 104 ~~~~~~A~~~~~~a~~~~---------------~~~-~~~~~~l~~~------------------~~~~~~~~~A~~~-- 147 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE---------------KTY-GPAWIAYGHS------------------FAVESEHDQAMAA-- 147 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC---------------TTC-THHHHHHHHH------------------HHHHTCHHHHHHH--
T ss_pred hhhHHHHHHHHHHHHHhC---------------Ccc-HHHHHHHHHH------------------HHHccCHHHHHHH--
Confidence 8 8886655544321100 000 1111111000 0011112222211
Q ss_pred CCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 000196 1520 LPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYD 1599 (1874)
Q Consensus 1520 ~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~ 1599 (1874)
+++=+.. .| ++...|...+.+..+.|+++.|...+.++....
T Consensus 148 ------------------~~~a~~~-------------------~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 189 (330)
T 3hym_B 148 ------------------YFTAAQL-------------------MK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189 (330)
T ss_dssp ------------------HHHHHHH-------------------TT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ------------------HHHHHHh-------------------cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 1100000 01 134567778899999999999999999998876
Q ss_pred CCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHh
Q 000196 1600 PETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLG 1679 (1874)
Q Consensus 1600 ~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g 1679 (1874)
|. .+.+....+.++...|+ ..+|+..++..+......... ......+.++..+|
T Consensus 190 ~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~la 243 (330)
T 3hym_B 190 PE----------DPFVMHEVGVVAFQNGE---WKTAEKWFLDALEKIKAIGNE-------------VTVDKWEPLLNNLG 243 (330)
T ss_dssp TT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTTSCS-------------CTTTTCCHHHHHHH
T ss_pred CC----------ChHHHHHHHHHHHHccc---HHHHHHHHHHHHHHhhhcccc-------------ccccHHHHHHHHHH
Confidence 53 46778888899999995 689999999877654321110 00011123344445
Q ss_pred hhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1680 SWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1680 ~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
...... ...++....|+++.+.+|+...+|..+|..+...= -...|++.|-+++.+.
T Consensus 244 ~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------------~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 244 HVCRKL------KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG--------------NFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHT------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT--------------CHHHHHHHHHTTTTTC
T ss_pred HHHHHh------cCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhc--------------cHHHHHHHHHHHHccC
Confidence 444433 24578899999999999999999999998766421 2346788888887764
No 106
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.047 Score=69.42 Aligned_cols=121 Identities=12% Similarity=0.016 Sum_probs=82.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh---cCCcchHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS---LGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~---~g~~~~~~~Al~~l~~~~ 1643 (1874)
.+...|...+.+..+.|+++.|...+.++....+.... ......+.+..+..+.. .| +..+|+..++..+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~---~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG----IYVGIAPLVGKATLLTRNPTVE---NFIEATNLLEKAS 442 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS----CSSCSHHHHHHHHHHHTSCCTT---HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch----HHHHHHHHHHHHHHHhhhhhcC---CHHHHHHHHHHHH
Confidence 34678999999999999999999999988765442110 00113467778888888 77 4789999998876
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
...... ......++++|...|+ .++....|+++.+++|+...+|.......
T Consensus 443 ~~~~~~---------------~~~~~~la~~~~~~g~-------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 443 KLDPRS---------------EQAKIGLAQMKLQQED-------------IDEAITLFEESADLARTMEEKLQAITFAE 493 (514)
T ss_dssp HHCTTC---------------HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HhCccc---------------HHHHHHHHHHHHHhcC-------------HHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 531100 0011234444444443 57788999999999999999988765443
No 107
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.001 Score=77.35 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=123.6
Q ss_pred CCCcchhHHHHHHHHHHHHhhcCcc-----chhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc--hhhHHH
Q 000196 163 GDRVEYRRFAAVLILKEMAENASTV-----FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE--TRWRVQ 235 (1874)
Q Consensus 163 ~~~~~~~r~aA~~~l~~la~~~p~~-----~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~--~~~~~~ 235 (1874)
.+++|..|.+|+.-+..+....+.. ....+..+.+.+-..+.|++..|...|++++..++....... ......
T Consensus 19 ~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~ 98 (278)
T 4ffb_C 19 TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNIT 98 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHH
Confidence 5789999999999998887765432 223344556666678899999999999999988765432111 112234
Q ss_pred HHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhh-hCh
Q 000196 236 WYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAH-FLR 313 (1874)
Q Consensus 236 ~~~~i~~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~-~~~ 313 (1874)
+...+++.+... ++++. ..++..++.++-.+++.... ...+.+.++..+.++++.+|..++..+..+.. |..
T Consensus 99 ~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~~~~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCGLDTS-----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHTSSS-----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhcCc-----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCC
Confidence 566777877764 77764 45667777777666653221 12345667777899999999999888887543 333
Q ss_pred hhH-HHHHHHHHHHHHHHhhcCCC--CcchHHHHHHHHHhhchhhh
Q 000196 314 DRF-VTNYLKICMNHILTVLRIPA--ERDSGFIALGEMAGALDGEL 356 (1874)
Q Consensus 314 ~~f-~~~yl~~~~~~Ll~~L~~~~--~R~~a~~alg~la~~v~~~~ 356 (1874)
... ....++.+++.+...|.+.+ .|..|..+++.+-..+|..+
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~ 218 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNS 218 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcch
Confidence 221 22356777888888887543 69999999999999998643
No 108
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.18 E-value=0.014 Score=62.14 Aligned_cols=186 Identities=17% Similarity=0.188 Sum_probs=127.1
Q ss_pred cHHHHHHHHHHHcCCCCchh-hHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccc
Q 000196 22 SLDALNRILADLCTHGNPKE-GASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLESNDAAENLGALRAIDELIDVA 100 (1874)
Q Consensus 22 ~~~~~~~~~~~L~s~~~~~~-~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~ 100 (1874)
+.+.+.-++.-|.++++..+ +|-..|.+.+ ++++...-...+..+.+.|.++++++|-....-|+-+++.|++.-
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~Leell----K~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v 106 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEIL----KRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV 106 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH----HHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHH----HhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC
Confidence 45567777777777655444 3555555555 444333333344455666667888877766777888888887653
Q ss_pred cCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHH
Q 000196 101 LGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEM 180 (1874)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~l 180 (1874)
. -..+...+..+.+..++. .++.-....|++.+|.+ . .....+..+...++.+ ..++...+.||+.++.++
T Consensus 107 p-L~~~~y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl-k-----v~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 107 P-MGSKTFLKAAKTLVSLLE-SPDDMMRIETIDVLSKL-Q-----PLEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp C-BCHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC-C-----BSCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhCcC-C-----cccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHh
Confidence 1 134556778889999986 67888999999999998 2 2222334455555555 567777889999999999
Q ss_pred HhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 181 AENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 181 a~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
+..+.+ ...+..|+..|-..|+.+++.+++-|..++..++
T Consensus 178 a~~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 178 LNSSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp GGGCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred hcccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 987543 1345566777777888889999999998876554
No 109
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.11 E-value=1.9 Score=58.88 Aligned_cols=381 Identities=15% Similarity=0.105 Sum_probs=205.1
Q ss_pred HHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHH
Q 000196 1329 EALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWE 1408 (1874)
Q Consensus 1329 e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~ 1408 (1874)
+.+..|+.++|+.+.|.-+.+..... ..-...++|++|+|++|.+.+++. +. .+....+=+++.+.|+|+
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~~--~~A~~VLie~i~nldrAiE~Aerv-----n~---p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDVN--TSAVQVLIEHIGNLDRAYEFAERC-----NE---PAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCH--HHHHHHHHHHHhhHHHHHHHHHhc-----CC---HHHHHHHHHHHHhCCCHH
Confidence 44677888888888888888865432 111233578888899998888753 11 233446667888888886
Q ss_pred HHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHh
Q 000196 1409 ELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRR 1488 (1874)
Q Consensus 1409 ~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~ 1488 (1874)
+-.+....- .+++.-. -.+.++-++|+|+..-+|+......... ...+..
T Consensus 1123 EAIdsYiKA---dD~say~----eVa~~~~~lGkyEEAIeyL~mArk~~~e-------------~~Idt~---------- 1172 (1630)
T 1xi4_A 1123 EAIDSYIKA---DDPSSYM----EVVQAANTSGNWEELVKYLQMARKKARE-------------SYVETE---------- 1172 (1630)
T ss_pred HHHHHHHhc---CChHHHH----HHHHHHHHcCCHHHHHHHHHHHHhhccc-------------ccccHH----------
Confidence 555443321 1221111 1366788888888887777543210000 000000
Q ss_pred cChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCccc
Q 000196 1489 GKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTED 1568 (1874)
Q Consensus 1489 ~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~ 1568 (1874)
... +| -++.++.|++++++ .++ ...+. .|-+++.....--+.- .. + ..
T Consensus 1173 --Laf----aY---AKl~rleele~fI~---~~n--------~ad~~-~iGd~le~eg~YeeA~-~~-------Y---~k 1220 (1630)
T 1xi4_A 1173 --LIF----AL---AKTNRLAELEEFIN---GPN--------NAHIQ-QVGDRCYDEKMYDAAK-LL-------Y---NN 1220 (1630)
T ss_pred --HHH----HH---HhhcCHHHHHHHHh---CCC--------HHHHH-HHHHHHHhcCCHHHHH-HH-------H---Hh
Confidence 000 11 12345666776652 211 11232 3666665433211110 00 0 11
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|.+.++..-|.|+++.|..+-.++.. +..-.+.+-..-..|+ -..|......++.
T Consensus 1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n---------------~~aWkev~~acve~~E---f~LA~~cgl~Iiv---- 1278 (1630)
T 1xi4_A 1221 VSNFGRLASTLVHLGEYQAAVDGARKANS---------------TRTWKEVCFACVDGKE---FRLAQMCGLHIVV---- 1278 (1630)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHhCC---------------HHHHHHHHHHHhhhhH---HHHHHHHHHhhhc----
Confidence 46999999999999999999998776521 2221222222223332 3344443322211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
.+..+-.+++|.... ...++.+..|+.++.+++.+.-.|..+|....+
T Consensus 1279 ----------------------~~deLeeli~yYe~~------G~feEAI~LlE~aL~LeraH~gmftELaiLyaK---- 1326 (1630)
T 1xi4_A 1279 ----------------------HADELEELINYYQDR------GYFEELITMLEAALGLERAHMGMFTELAILYSK---- 1326 (1630)
T ss_pred ----------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh----
Confidence 122233344444332 346889999999999999888888887766543
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc-CCChhhHHHHHHH
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA-HVNINTWLVVLPQ 1807 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~-~ip~~~wl~~ipQ 1807 (1874)
| ..+-+..+++.|-..+...+--.-+ ...+--..+..|...+|+......+|.++.. .-....|-.
T Consensus 1327 y--------~peklmEhlk~f~~rini~k~~r~~-e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~---- 1393 (1630)
T 1xi4_A 1327 F--------KPQKMREHLELFWSRVNIPKVLRAA-EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKD---- 1393 (1630)
T ss_pred C--------CHHHHHHHHHHHHHhcccchHhHHH-HHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHH----
Confidence 2 1234556677787666532100000 2344567788888888876655545544421 111223333
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHH
Q 000196 1808 IIARIHSNNRAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLR 1853 (1874)
Q Consensus 1808 Liari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~~~~R 1853 (1874)
.+.... + -.+....+.=....||..+-+-|.++..--+..|
T Consensus 1394 ~i~kv~--n---~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R 1434 (1630)
T 1xi4_A 1394 IITKVA--N---VELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTR 1434 (1630)
T ss_pred Hhcccc--c---HHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHH
Confidence 222222 2 2445555555558999998887777754333333
No 110
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.07 E-value=0.0069 Score=72.22 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=141.2
Q ss_pred HhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhcc
Q 000196 507 VVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSLY 586 (1874)
Q Consensus 507 ~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~ 586 (1874)
+..-+.++.+++|.-||.+++.++.....+. ++.. ..+.|--+|...+-+|.
T Consensus 179 L~~DLFdp~WEiRHGAALGLREILR~hG~GA-------GR~~---------------------~~N~DLAvRLLCVLALD 230 (800)
T 3oc3_A 179 ISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-------DIQI---------------------RVDSKLFSKIYEILVTD 230 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CCC---------------------CCCTTHHHHHHHHHHHB
T ss_pred HHHHhcCcchhhhhHHHHHHHHHHHHhccCC-------ceec---------------------cccHHHHHHHHHHHHhc
Confidence 3344667899999999999999987543221 1110 01113334444445553
Q ss_pred CCCCcchhhccHhhHHHHHHHhCCC-CHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 587 GNRGFDDFLAQADCLSAIFAALNDE-DFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 587 ~~~~f~~~L~~~~~l~~L~~~l~D~-~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
+|..|.+ |. ...||++|.++||.+ .+.|.. .. ++.+++..+ .. ..++.|.-++-.
T Consensus 231 ---RFGDYVS-------------DqVVAPVRETaAQtLGaL-~hLp~e-~~----IL~qLV~~l-~~-~~WEVRHGGLLG 286 (800)
T 3oc3_A 231 ---KFNDFVD-------------DRTVAPVRDAAAYLLSRI-YPLIGP-ND----IIEQLVGFL-DS-GDWQVQFSGLIA 286 (800)
T ss_dssp ---CCBBCSS-------------SSCBCHHHHHHHHHHHHH-TTTSCS-CC----HHHHHTTGG-GC-SCHHHHHHHHHH
T ss_pred ---ccccccc-------------CeeeeehHHHHHHHHHHH-HhCChh-HH----HHHHHHhhc-CC-CCeeehhhhHHH
Confidence 6666553 43 467999999999999 777765 23 333344333 33 467877766655
Q ss_pred HHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 666 LGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 666 L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
|--+ .+.+.. ++.+++.++..+.|. +.+|+..++.++-.++ ....++.++..+-+.|.+.++..
T Consensus 287 LKYL----~DLL~~-Ld~Vv~aVL~GL~D~-----DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLS 350 (800)
T 3oc3_A 287 LGYL----KEFVED-KDGLCRKLVSLLSSP-----DEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELIS 350 (800)
T ss_dssp HHHT----GGGCCC-HHHHHHHHHHHTTCS-----SHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCC
T ss_pred HHHH----HHHHHH-HHHHHHHHHhhcCCc-----ccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccc
Confidence 5544 444444 889999999999985 7789888777765555 23457788888888887543222
Q ss_pred -hHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 000196 746 -KREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGI 800 (1874)
Q Consensus 746 -~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~ 800 (1874)
.......-|+.++...... ...|++++.|..++++. -..||.++++++-.
T Consensus 351 ASTgSVMdLLAkL~s~p~~a----~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~t 401 (800)
T 3oc3_A 351 VSKTSNLSLLTKIYRENPEL----SIPPERLKDIFPCFTSP-VPEVRTSILNMVKN 401 (800)
T ss_dssp TTHHHHHHHHHHHHHHCTTC----CCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTT
T ss_pred hhhHHHHHHHHHHHcCCccc----ccChHHHHHHHhhhcCC-cHHHHHHHHHHHHH
Confidence 2233455667777665321 12368888999999766 57999999998644
No 111
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.00 E-value=0.038 Score=58.98 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=124.1
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHH
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADE 149 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~ 149 (1874)
...+.++++..|...|..++.+++.++....+. ....+.++.+-+-.++. ..|..|.-.|.+|++.|... .....+-
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk-~~dEkval~A~r~L~~LLe~-vpL~~~~ 112 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS-QENEKVTIKALRALGYLVKD-VPMGSKT 112 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCC-STTHHHHHHHHHHHHHHHTT-CCBCHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHcC-CCCCHHH
Confidence 445678899999999999999999999875332 23445666666666664 67899999999999999874 3455555
Q ss_pred HHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc
Q 000196 150 VEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE 229 (1874)
Q Consensus 150 v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~ 229 (1874)
+...++.....+. ++++-.+.-|...++-+ .+..+ .+.+.+.|...+..+++.+..+|..++-.+.....+.
T Consensus 113 y~Kl~~aL~dlik-~~~~il~~eaae~Lgkl---kv~~~---~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~- 184 (265)
T 3b2a_A 113 FLKAAKTLVSLLE-SPDDMMRIETIDVLSKL---QPLED---SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS- 184 (265)
T ss_dssp HHHHHHHHHHHTT-SCCHHHHHHHHHHHHHC---CBSCC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC-
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHHHHhCcC---Ccccc---hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH-
Confidence 5555555555444 66667777777777666 33333 4456666667778899999999988877654432211
Q ss_pred hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000196 230 TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1874)
Q Consensus 230 ~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1874)
.....++.++-.-+... +...+.-|+.++..++.
T Consensus 185 -----~i~~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 185 -----GHLTLILDEIPSLLQND-NEFIVELALDVLEKALS 218 (265)
T ss_dssp -----CCGGGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 12333444444445555 56788888888877765
No 112
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.96 E-value=0.051 Score=58.07 Aligned_cols=170 Identities=17% Similarity=0.214 Sum_probs=125.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
|....|..++...++.|+++.|...+.++.+.+|+ .+.+.+..+.++...|+ ..+|+..++......
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~a~~~~~~~~~~~ 69 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN----------NVETLLKLGKTYMDIGL---PNDAIESLKKFVVLD 69 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999988763 46778888899999995 678998888765432
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. .+.++..+|...... ...+.....|.++.+.+|+...+|+.+|..+...
T Consensus 70 ~~----------------------~~~~~~~~~~~~~~~------~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~- 120 (184)
T 3vtx_A 70 TT----------------------SAEAYYILGSANFMI------DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM- 120 (184)
T ss_dssp CC----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred ch----------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-
Confidence 11 123344555554443 3467888999999999999999999998776541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.-...|++.|-+++... .........+=.+++..|..++....+++.+..=|
T Consensus 121 -------------g~~~~A~~~~~~~l~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 121 -------------GEHDKAIEAYEKTISIK------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp -------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred -------------CCchhHHHHHHHHHHhc------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 12347899999999875 23345566677778888888877777777665433
No 113
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=96.52 E-value=0.28 Score=58.85 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+....
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN----------DYLLWNKLGATLANGNQ---SEEAVAAYRRALELQP 282 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 5788899999999999999999999998876542 36677888889989995 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc-----------hHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW-----------GKAWH 1716 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~-----------~k~w~ 1716 (1874)
.. ..-...++.+|...|+ .++....|+++++++|+. ..+|.
T Consensus 283 ~~---------------~~~~~~l~~~~~~~g~-------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 283 GY---------------IRSRYNLGISCINLGA-------------HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp TC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred Cc---------------HHHHHHHHHHHHHCCC-------------HHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 00 0111234555555554 467889999999999987 78999
Q ss_pred HHHHHHHHH
Q 000196 1717 SWALFNTAV 1725 (1874)
Q Consensus 1717 ~wA~~n~~~ 1725 (1874)
.+|..+...
T Consensus 335 ~l~~~~~~~ 343 (368)
T 1fch_A 335 TLRLALSML 343 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988876653
No 114
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.43 E-value=0.0011 Score=66.97 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=69.6
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.+...++++++.+|..|+.+++.+-. .. + +.|+. .+.|+++.||..++.+|
T Consensus 16 ~l~~~L~~~~~~vR~~A~~~L~~~~~-----------------------~~-~----~~L~~-~L~d~~~~vR~~A~~aL 66 (131)
T 1te4_A 16 PRGSHMADENKWVRRDVSTALSRMGD-----------------------EA-F----EPLLE-SLSNEDWRIRGAAAWII 66 (131)
T ss_dssp -----CCSSCCCSSSSCCSSTTSCSS-----------------------TT-H----HHHHH-GGGCSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCc-----------------------hH-H----HHHHH-HHcCCCHHHHHHHHHHH
Confidence 44566778888888776644432210 01 1 22332 46789999999998888
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
+. + ..++.++.|..+++|+++.||..|+..|+++.. + ..+..++..+ .+ .++..|..|+..
T Consensus 67 ~~---~----~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~---~a~~~L~~~l-~d-~~~~vr~~A~~a 127 (131)
T 1te4_A 67 GN---F----QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------E---RVRAAMEKLA-ET-GTGFARKVAVNY 127 (131)
T ss_dssp GG---G----CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------H---HHHHHHHHHT-TS-CCTHHHHHHHHH
T ss_pred Hh---c----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------H---HHHHHHHHHH-hC-CCHHHHHHHHHH
Confidence 62 1 124567788888889999999999999998763 1 1111222223 33 567788888877
Q ss_pred HHH
Q 000196 666 LGC 668 (1874)
Q Consensus 666 L~~ 668 (1874)
|+.
T Consensus 128 L~~ 130 (131)
T 1te4_A 128 LET 130 (131)
T ss_dssp GGG
T ss_pred HHh
Confidence 653
No 115
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.41 E-value=0.32 Score=54.67 Aligned_cols=112 Identities=11% Similarity=0.006 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+....
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------DARGYSNRAAALAKLMS---FPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc----------cHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCH
Confidence 4678899999999999999999999998877553 36777888888888885 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc------ccchHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA------TKWGKAWHSWAL 1720 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~------~~~~k~w~~wA~ 1720 (1874)
. .+.++..+|...... ...++....|+++.+++ |+...+|..++.
T Consensus 205 ~----------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 205 N----------------------FVRAYIRKATAQIAV------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred H----------------------HHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 0 133455555555443 34678889999999999 777777766553
No 116
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.41 E-value=0.001 Score=67.43 Aligned_cols=51 Identities=24% Similarity=0.436 Sum_probs=25.4
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhh
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLS 627 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~ 627 (1874)
.+.|+++.+|..++.+|+. +.. + .++.|..+++|+++.||..|+..|+++.
T Consensus 20 ~L~~~~~~vR~~A~~~L~~---~~~----~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~ 70 (131)
T 1te4_A 20 HMADENKWVRRDVSTALSR---MGD----E-AFEPLLESLSNEDWRIRGAAAWIIGNFQ 70 (131)
T ss_dssp -CCSSCCCSSSSCCSSTTS---CSS----T-THHHHHHGGGCSCHHHHHHHHHHHGGGC
T ss_pred HhcCCCHHHHHHHHHHHHH---hCc----h-HHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 3455555555555555531 111 1 1355555555555556655555555543
No 117
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.38 E-value=0.49 Score=59.25 Aligned_cols=325 Identities=13% Similarity=0.110 Sum_probs=160.4
Q ss_pred ccCCCCCCCCCCcHHHHHHHHHHHcCCC--CchhhHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHhhhcC--CChhh
Q 000196 10 YIGPPAPGAGGGSLDALNRILADLCTHG--NPKEGASLALRKHIEEQARDLGGEAFSRFMDQLYDRISGLLES--NDAAE 85 (1874)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~L~s~~--~~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~l~~~i~~l~~s--~~~~~ 85 (1874)
+.|++.+|+++.+.+.+.++.+.|.+.. +++|.|..+|+.+- |+...+-...-++.|.+ .++. .|.+.
T Consensus 7 ~~g~~~~~~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~s----k~y~~~Vg~~~l~~li~----~L~~d~~D~e~ 78 (651)
T 3grl_A 7 VMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLS----KKYRLEVGIQAMEHLIH----VLQTDRSDSEI 78 (651)
T ss_dssp -----------CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTT----TTTTTHHHHHTHHHHHH----HHHSCTTCHHH
T ss_pred hhCCCCCCCCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHH----HHhHHHhhhhhHHHHHH----HHhcccccHHH
Confidence 4667777888999999999999998775 45666887777763 44333322222222222 2221 34433
Q ss_pred hhhHHHHHhHhhccccCcch---------hHHH----------HHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcc
Q 000196 86 NLGALRAIDELIDVALGENA---------SKVS----------KFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMT 146 (1874)
Q Consensus 86 r~~~i~ai~~li~~~~~~~~---------~~~~----------~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~ 146 (1874)
=.+.+-.+-.++.....+.. ..-- .....|..++. ..|..++-.+.+.|..|+...+...
T Consensus 79 v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~ 157 (651)
T 3grl_A 79 IGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQV 157 (651)
T ss_dssp HHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHH
Confidence 34344444333322211000 0001 12235566665 5789999999999999998744322
Q ss_pred hH-HHH--HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc--chhchHHHHHHHHHhhcCCch----hHHHHHHHH
Q 000196 147 AD-EVE--FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV--FNVHVAEFVDAIWVALRDPTL----AVRERAVEA 217 (1874)
Q Consensus 147 ~~-~v~--~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~--~~~~l~~il~~i~~~l~D~~~----~VR~aA~~a 217 (1874)
.+ ++. .-+++++..|. ++++..|-.|+.+|.+|+.+.+.. +. -+...|+.++.-+++... .|-+.+...
T Consensus 158 Q~~Il~~p~gi~~Lv~lL~-d~rE~iRneallLL~~Lt~~n~~iQklV-AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l 235 (651)
T 3grl_A 158 QQIILVSPMGVSRLMDLLA-DSREVIRNDGVLLLQALTRSNGAIQKIV-AFENAFERLLDIITEEGNSDGGIVVEDCLIL 235 (651)
T ss_dssp HHHHHHSTTHHHHHHGGGG-CSSHHHHHHHHHHHHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCHHHHHHH-HHhccHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 22 221 35677777775 456889999999999999987752 11 122335555555544333 232222332
Q ss_pred HHHHHHHHhhcchhhHHHHHH-HHHHHHHhhccCCC---Chh-----HHHHHHHHHHHHHHcchhh--hHHHHHH-----
Q 000196 218 LRACLRVIEKRETRWRVQWYY-RMFEATQDGLGRNA---PVH-----SIHGSLLAVGELLRNTGEF--MMSRYRE----- 281 (1874)
Q Consensus 218 l~~~~~~i~~r~~~~~~~~~~-~i~~~~~~~l~~~~---~~~-----~~~~al~~l~~ll~~~~~~--~~~~~~~----- 281 (1874)
+..++ . ..+..+..+.. .+.+.+..-+.... .|. ...+++.+++-|+...+.. ...+-..
T Consensus 236 l~nLL---r-~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g 311 (651)
T 3grl_A 236 LQNLL---K-NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311 (651)
T ss_dssp HHHHH---T-TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHH---h-cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence 33222 1 11112222221 13333333333221 122 2345555666665533221 1111111
Q ss_pred HHHHHHHHhhcc--hhHHHHHHHHHhHhHhhhCh---hhHHHHH------HHHHHHHHHHhhcCC---CCcchHHHHHHH
Q 000196 282 VAEIVLRYLEHR--DRLVRLSITSLLPRIAHFLR---DRFVTNY------LKICMNHILTVLRIP---AERDSGFIALGE 347 (1874)
Q Consensus 282 i~~~ll~~~~~~--~~~vr~~~~~~i~~la~~~~---~~f~~~y------l~~~~~~Ll~~L~~~---~~R~~a~~alg~ 347 (1874)
++..+++..-.. ...|+..++.+++.+..-++ +.|.+.- .+.++..|+..+.+. ..|.+|+.|+..
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a 391 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC 391 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 344555555443 56789999999998876554 2333210 022333344444321 247788877776
Q ss_pred HH
Q 000196 348 MA 349 (1874)
Q Consensus 348 la 349 (1874)
..
T Consensus 392 y~ 393 (651)
T 3grl_A 392 FL 393 (651)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 118
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.35 E-value=0.13 Score=56.85 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=122.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+..-.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~~~P 70 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ----------DPEALYWLARTQLKLGL---VNPALENGKTLVARTP 70 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 4578899999999999999999999999887663 47788888999999995 6899999998775311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHH-----------hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKL-----------GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWH 1716 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~-----------g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~ 1716 (1874)
. ...-...++.++... |++ ++.+..|++|++++|++..+|.
T Consensus 71 ~---------------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~-------------~~A~~~~~~al~~~P~~~~~~~ 122 (217)
T 2pl2_A 71 R---------------YLGGYMVLSEAYVALYRQAEDRERGKGYL-------------EQALSVLKDAERVNPRYAPLHL 122 (217)
T ss_dssp T---------------CHHHHHHHHHHHHHHHHTCSSHHHHHHHH-------------HHHHHHHHHHHHHCTTCHHHHH
T ss_pred C---------------cHHHHHHHHHHHHHhhhhhhhhcccccCH-------------HHHHHHHHHHHHhCcccHHHHH
Confidence 0 011123456666666 544 6788999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000196 1717 SWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1874)
Q Consensus 1717 ~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1874)
.+|...... + -...|+..|-+++.+. ........+-.+++..|..++....+++.+..-
T Consensus 123 ~lg~~~~~~-------g-------~~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 123 QRGLVYALL-------G-------ERDKAEASLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHHHT-------T-------CHHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHc-------C-------ChHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 998775531 1 2347899999998873 223344556666777788777766666665543
Q ss_pred C
Q 000196 1797 N 1797 (1874)
Q Consensus 1797 p 1797 (1874)
|
T Consensus 182 P 182 (217)
T 2pl2_A 182 P 182 (217)
T ss_dssp T
T ss_pred C
Confidence 3
No 119
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.32 E-value=0.05 Score=71.75 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=121.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++.+.|..++.+.++.|+++.|...+.++.+.+|+ .+...+..+..+..+|+ ..+|+..+++.++-
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~----------~~~a~~nLg~~l~~~g~---~~eA~~~~~~Al~l- 72 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE----------FAAAHSNLASVLQQQGK---LQEALMHYKEAIRI- 72 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH-
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-
Confidence 34788999999999999999999999999988763 46777888889999995 68999999887642
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. -.+.++..+|.-..++ ...++.++.|++|++++|++..+|+.+|....+.
T Consensus 73 ~P---------------------~~~~a~~nLg~~l~~~------g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~- 124 (723)
T 4gyw_A 73 SP---------------------TFADAYSNMGNTLKEM------QDVQGALQCYTRAIQINPAFADAHSNLASIHKDS- 124 (723)
T ss_dssp CT---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred CC---------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-
Confidence 11 1244566666665554 3468899999999999999999999999775541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHH
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQ 1790 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~ 1790 (1874)
.-...|++.|-+++.+. .........+-.+....|+..+..+.++
T Consensus 125 -------------g~~~eAi~~~~~Al~l~------P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 125 -------------GNIPEAIASYRTALKLK------PDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp -------------TCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHhC------CCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 12347899999999985 2334556666777777777665444433
No 120
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.21 E-value=0.13 Score=60.64 Aligned_cols=276 Identities=14% Similarity=0.110 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHHHhhhChHHHHH-HHHHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcc
Q 000196 42 GASLALRKHIEEQARDLGGEAFSR-FMDQLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFE 120 (1874)
Q Consensus 42 ~aa~~l~~~v~~~~~~~~~~~~~~-~~~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~ 120 (1874)
+....+.+++--.. .++.|.+ ....+.-.+.+++.++|...|+-+-+++..+.... .+.- . ..|.+.+=+.
T Consensus 43 kc~~~l~kll~l~~---~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i-L---v~Nsl~kDl~ 114 (355)
T 3tjz_B 43 KCAHILTKILYLIN---QGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI-I---VTSSLTKDMT 114 (355)
T ss_dssp HHHHHHHHHHHHHH---HTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG-G---GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH-H---HHHHHHhhcC
Confidence 34445777764443 3344532 33455666778999999999998999998887663 2211 2 2344444443
Q ss_pred cCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHH
Q 000196 121 VKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIW 200 (1874)
Q Consensus 121 ~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~ 200 (1874)
..++-++..|-++++++... ...+.+...++.++ .+++...|.+|+.+..-+....|+.+. .+++.+-
T Consensus 115 -~~N~~iR~lALRtL~~I~~~---~m~~~l~~~lk~~L----~d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~ 182 (355)
T 3tjz_B 115 -GKEDSYRGPAVRALCQITDS---TMLQAIERYMKQAI----VDKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQ 182 (355)
T ss_dssp -SSCHHHHHHHHHHHHHHCCT---TTHHHHHHHHHHHH----TCSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHH
T ss_pred -CCcHhHHHHHHHHHhcCCCH---HHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHH
Confidence 35688999999999999764 34555555666665 467778888888888888888888765 4566666
Q ss_pred HhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh-ccCCCChhHHHHHHHHHHHHHHcchhhhHHHH
Q 000196 201 VALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG-LGRNAPVHSIHGSLLAVGELLRNTGEFMMSRY 279 (1874)
Q Consensus 201 ~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~-l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~ 279 (1874)
..+.|+++-|...|..++..+. +.+ ...+.++.+.+..+ +.+ +| +-+.+++.+.....+--...-
T Consensus 183 ~ll~d~n~~V~~~Al~lL~ei~----~~d----~~a~~kLv~~l~~~~l~~--~~----~q~~llr~l~~~~~~d~~~~~ 248 (355)
T 3tjz_B 183 EAASSDNIMVQYHALGLLYHVR----KND----RLAVSKMISKFTRHGLKS--PF----AYCMMIRVASRQLEDEDGSRD 248 (355)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHSSCCSC--HH----HHHHHHHHHTCC---------
T ss_pred HHhcCCCccHHHHHHHHHHHHH----hhc----hHHHHHHHHHHhcCCCcC--hH----HHHHHHHHHHHhccccchhhH
Confidence 7889999999766655554432 122 12344555544432 222 22 223333332221111000122
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcC--CCCcchHHHHHHHHHhhchhhh
Q 000196 280 REVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRI--PAERDSGFIALGEMAGALDGEL 356 (1874)
Q Consensus 280 ~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~--~~~R~~a~~alg~la~~v~~~~ 356 (1874)
.++++.+...++|.++.|.-.++.+|-.+....... +......+...|.+ +..|-.|+..|..++..-+..+
T Consensus 249 ~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v 322 (355)
T 3tjz_B 249 SPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV 322 (355)
T ss_dssp --------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-----------
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH
Confidence 346666777778999999988888777665433221 23334444455543 3467888888888776555433
No 121
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=96.17 E-value=0.4 Score=57.57 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=83.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|..++.+..+.|+++.|...+.++....|. .+.+....+..+...|+ ..+|+..+++.+....
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE----------DYSLWNRLGATLANGDR---SEEAVEAYTRALEIQP 278 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Confidence 5778999999999999999999999998877553 36677888888888885 6899999998765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------------hHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------------GKAW 1715 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------------~k~w 1715 (1874)
.. ..-...++.+|..+|+| ++....|++|.+++|+. ..+|
T Consensus 279 ~~---------------~~~~~~l~~~~~~~g~~-------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 330 (365)
T 4eqf_A 279 GF---------------IRSRYNLGISCINLGAY-------------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIW 330 (365)
T ss_dssp TC---------------HHHHHHHHHHHHHHTCC-------------HHHHHHHHHHHHHHHCC------------CHHH
T ss_pred Cc---------------hHHHHHHHHHHHHCCCH-------------HHHHHHHHHHHHhCcccCCCcccchhhhHHHHH
Confidence 00 00112345555555443 67889999999999873 5677
Q ss_pred HHHHHHHH
Q 000196 1716 HSWALFNT 1723 (1874)
Q Consensus 1716 ~~wA~~n~ 1723 (1874)
..++..+.
T Consensus 331 ~~l~~~~~ 338 (365)
T 4eqf_A 331 AALRIALS 338 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776644
No 122
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.12 E-value=0.44 Score=54.20 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+..+...++++.|...+.++...+|. .+...+..+......|+.....+|+..+++.+....
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN----------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 4566777775666667999999999998877653 255666677777777753223568888888765443
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
..+. .. ....+.++..+|...... ...++....|+++++++|+...+|..+.....
T Consensus 211 ~~~~-------------~~-~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 211 PGGA-------------KY-KDELIEANEYIAYYYTIN------RDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp GGGG-------------GG-HHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred cccc-------------cc-hHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 2110 01 344667888888877664 45789999999999999999999988776543
No 123
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=96.09 E-value=0.74 Score=53.84 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++...+|. .+......+..+...|+ ..+|+..+++.+....
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD----------DAQLWNKLGATLANGNR---PQEALDAYNRALDINP 237 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC
Confidence 4678889999999999999999999998876542 36777888888988885 6899999988765321
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc------------chHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK------------WGKAW 1715 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~------------~~k~w 1715 (1874)
. ...++..+|...... ...++....|+++++.+|+ ...+|
T Consensus 238 ~----------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 238 G----------------------YVRVMYNMAVSYSNM------SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred C----------------------CHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 0 112333344443332 2357788999999999998 78888
Q ss_pred HHHHHHHHH
Q 000196 1716 HSWALFNTA 1724 (1874)
Q Consensus 1716 ~~wA~~n~~ 1724 (1874)
..+|.....
T Consensus 290 ~~l~~~~~~ 298 (327)
T 3cv0_A 290 DFFRMLLNV 298 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888877654
No 124
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.06 E-value=0.14 Score=55.42 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=94.6
Q ss_pred HHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhh-hCCCcch
Q 000196 69 QLYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLAR-AGGAMTA 147 (1874)
Q Consensus 69 ~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~-~~g~~~~ 147 (1874)
++......|.+++....|..|+.+|..+ . . .....+.++..++....=.|++.++.+++.++. .+...
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~-~-------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K-------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T-------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-c-C-------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 4555666788888888999999988877 3 1 134667777756544456999999999999986 43222
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
.++...+|..++..+.||.|+. .++--+.. | .+......+++.|-....|++..||.+-+++|+.+.
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase-~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATE-GLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHH-HTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHH-hhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 2566778998777766665543 33222221 3 345666778888888888999999999999998754
No 125
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=96.06 E-value=0.12 Score=62.56 Aligned_cols=104 Identities=17% Similarity=0.120 Sum_probs=5.8
Q ss_pred HhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHH
Q 000196 1296 EKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALK 1375 (1874)
Q Consensus 1296 ~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~ 1375 (1874)
.+++...+|.-|.|.. +.+..+-.|.+.|.+.|+.+.|.=.+..............-++.+|+|++|..
T Consensus 14 ~~~~~ld~A~~fae~~-----------~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----------NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----------CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4666677777776654 11245566666666666666554433322211122222234677788888888
Q ss_pred HHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHH
Q 000196 1376 AYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLC 1414 (1874)
Q Consensus 1376 ~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~ 1414 (1874)
+|+......+++ ......+.|+.++|+|+.+.++.
T Consensus 83 yl~~ark~~~~~----~i~~~Li~~Y~Klg~l~e~e~f~ 117 (449)
T 1b89_A 83 YLQMARKKARES----YVETELIFALAKTNRLAELEEFI 117 (449)
T ss_dssp ------------------------------CHHHHTTTT
T ss_pred HHHHHHHhCccc----hhHHHHHHHHHHhCCHHHHHHHH
Confidence 666554321111 12345667777778877766554
No 126
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=95.89 E-value=1.8 Score=52.26 Aligned_cols=128 Identities=11% Similarity=-0.018 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|..++.+..+.|+++.|...+.++....+..... .....+....+.+....|+ ..+|+..++..+.....
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc----hHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999998877543221100 0113456677788888885 68899999886653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1874)
..+....+.++..+|...... ...++....|++|.++.+.. ..++..+|..+
T Consensus 300 ----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 357 (406)
T 3sf4_A 300 ----------------LNDRIGEGRACWSLGNAYTAL------GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQ 357 (406)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCcHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 112334566667777766554 34688899999998885543 45666666665
Q ss_pred HHH
Q 000196 1723 TAV 1725 (1874)
Q Consensus 1723 ~~~ 1725 (1874)
...
T Consensus 358 ~~~ 360 (406)
T 3sf4_A 358 MVL 360 (406)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 127
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=95.78 E-value=0.82 Score=53.42 Aligned_cols=205 Identities=13% Similarity=0.140 Sum_probs=141.3
Q ss_pred ccHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcch
Q 000196 1567 EDVETWLKFASLCRK-------SGRI-------SQARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk-------~g~~-------~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~ 1631 (1874)
.+.+.|+.++.+..+ .|++ +.|...+.++.. .+|. .+.+-+.++.++...|+
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~----------~~~~~~~~~~~~~~~~~--- 114 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----------NMLLYFAYADYEESRMK--- 114 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT----------CHHHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHhcCC---
Confidence 457888888888764 4776 889999999887 5542 35677889999999985
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1632 ~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
..+|...+++.+.. . + .+.. .++..+|.+..+. ...++....|.+|++.+|..
T Consensus 115 ~~~A~~~~~~al~~-~--p---------------~~~~---~~~~~~~~~~~~~------~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 115 YEKVHSIYNRLLAI-E--D---------------IDPT---LVYIQYMKFARRA------EGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHHHHHHHHHHTS-S--S---------------SCTH---HHHHHHHHHHHHH------HCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHHHHhc-c--c---------------cCcc---HHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCC
Confidence 67899888886641 1 0 0111 1567777777654 35788999999999999998
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000196 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1874)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1874)
...|..+|...... . .-...|++.|-+++...+ ........+..+....|+.++....+++
T Consensus 168 ~~~~~~~a~~~~~~------~-------~~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 168 HHVYVTAALMEYYC------S-------KDKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp THHHHHHHHHHHHT------S-------CCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------c-------CCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888777654321 0 123467888888888752 2345567777777888998888888888
Q ss_pred cccC--CChh----hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCch
Q 000196 1792 GFAH--VNIN----TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQ 1836 (1874)
Q Consensus 1792 ~~~~--ip~~----~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPq 1836 (1874)
.+.. +|+. .|..++ ++..+.+.. .-...++.+..+.+|.
T Consensus 229 al~~~~l~p~~~~~l~~~~~-~~~~~~g~~-----~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 229 VLTSGSLPPEKSGEIWARFL-AFESNIGDL-----ASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHSSSSCGGGCHHHHHHHH-HHHHHHSCH-----HHHHHHHHHHHHHTTT
T ss_pred HHhccCCCHHHHHHHHHHHH-HHHHHcCCH-----HHHHHHHHHHHHHccc
Confidence 8874 5653 565554 333444432 2234667777788886
No 128
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.70 E-value=0.034 Score=65.61 Aligned_cols=240 Identities=12% Similarity=0.103 Sum_probs=105.1
Q ss_pred HHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHHHHHhc
Q 000196 506 SVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHSIFSSL 585 (1874)
Q Consensus 506 ~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~~l~~l 585 (1874)
.+.+-+.|+++.+|-.|..++|++.... ++..+ ...+..++.|.++.||.+++-+.
T Consensus 108 sl~kDl~~~N~~iR~lALRtL~~I~~~~-----------------------m~~~l-~~~lk~~L~d~~pyVRk~A~l~~ 163 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPAVRALCQITDST-----------------------MLQAI-ERYMKQAIVDKVPSVSSSALVSS 163 (355)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCTT-----------------------THHHH-HHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHhhcCCCcHhHHHHHHHHHhcCCCHH-----------------------HHHHH-HHHHHHHcCCCCHHHHHHHHHHH
Confidence 3344567889999999999999986432 12322 23455678999999999887665
Q ss_pred cCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHH
Q 000196 586 YGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKL 665 (1874)
Q Consensus 586 ~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~ 665 (1874)
..--..++.+. ..++..+..+++|.++.|...|+.++..+.+..+. .+..++..+... +. + -+.+-..
T Consensus 164 ~kL~~~~pe~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--------a~~kLv~~l~~~-~l-~-~~~~q~~ 231 (355)
T 3tjz_B 164 LHLLKCSFDVV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--------AVSKMISKFTRH-GL-K-SPFAYCM 231 (355)
T ss_dssp HHHTTTCHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--------HHHHHHHHHHSS-CC-S-CHHHHHH
T ss_pred HHHhccCHHHH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--------HHHHHHHHHhcC-CC-c-ChHHHHH
Confidence 31011122221 23566677889999999999999999999876632 222233333221 11 0 0122222
Q ss_pred HHHHHHhC-ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcch
Q 000196 666 LGCLIRNC-ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAV 744 (1874)
Q Consensus 666 L~~l~~~~-~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~ 744 (1874)
+-.++... ++.-......+++.+.+.++. .++.|.-.++.+|-.+.......+ ....+.+...+.. .+.
T Consensus 232 llr~l~~~~~~d~~~~~~~~~~~l~~~L~~-----~~~aVvyEa~k~I~~l~~~~~~~~----~~a~~~L~~fLss-~d~ 301 (355)
T 3tjz_B 232 MIRVASRQLEDEDGSRDSPLFDFIESCLRN-----KHEMVVYEAASAIVNLPGCSAKEL----APAVSVLQLFCSS-PKA 301 (355)
T ss_dssp HHHHHTCC-----------------CCCCC-----SSHHHHHHHHHHHTC---------------CCCTHHHHHHS-SSS
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcC-----CChHHHHHHHHHHHhccCCCHHHH----HHHHHHHHHHHcC-CCc
Confidence 22222221 111011224455556666654 367777777766655544222222 1222333334443 357
Q ss_pred hhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 000196 745 TKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVL 798 (1874)
Q Consensus 745 ~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~l 798 (1874)
+.|=.|+..|..++...+..+.... ..+.+.+++ .+..++.-|+..+
T Consensus 302 niryvaLr~L~~l~~~~P~~v~~~n------~~ie~li~d-~n~sI~t~Aittl 348 (355)
T 3tjz_B 302 ALRYAAVRTLNKVAMKHPSAVTACN------LDLENLVTD-ANRSIATLAITTL 348 (355)
T ss_dssp SSHHHHHHCC--------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHCcHHHHHHH------HHHHHHccC-CcHhHHHHHHHHh
Confidence 7999999999998877655544322 122333433 3555665554444
No 129
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=95.69 E-value=3.7 Score=49.74 Aligned_cols=122 Identities=13% Similarity=-0.042 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|..++.+..+.|+++.|...+.++....+..... .....+....+.+++..|+ ..+|+..+++.+.....
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER----EVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999998877653321100 0124566778888888995 68899999887653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
..+....+.++..+|...... ...++....|++|.++.++.......|-
T Consensus 336 ----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 384 (411)
T 4a1s_A 336 ----------------LGDRIGEARACWSLGNAHSAI------GGHERALKYAEQHLQLAXXXXXXXXXXX 384 (411)
T ss_dssp ----------------HTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ----------------CCChHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHhhcccchhhhh
Confidence 112345677788888877665 3578899999999999886655444443
No 130
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=95.67 E-value=0.032 Score=75.44 Aligned_cols=153 Identities=11% Similarity=0.106 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhhhc-CCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCC-hHHHHHHHHHHHHHhhhC
Q 000196 66 FMDQLYDRISGLLE-SNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRD-REILVLASKVLGHLARAG 142 (1874)
Q Consensus 66 ~~~~l~~~i~~l~~-s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d-~~v~~~aa~~lg~l~~~~ 142 (1874)
+.+.+.+.+.+..+ +++| .|.+.+.-+-.+.-...-- ......+..+.+..++. ++. .+|+..|+.+|..|...+
T Consensus 798 ~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~-D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 798 HVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLY-NEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTT-CSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcC
Confidence 34555666666665 6788 8887665554443211000 11122456677777774 567 899999999999998753
Q ss_pred CCcchHHHHHHHHHHHhhhcC-----------CCcchhHHHHHHHHHHHHhhcCccc--hhchHHHHHHHHHhhcCCchh
Q 000196 143 GAMTADEVEFQVKMALDWLRG-----------DRVEYRRFAAVLILKEMAENASTVF--NVHVAEFVDAIWVALRDPTLA 209 (1874)
Q Consensus 143 g~~~~~~v~~~~~~~~~~l~~-----------~~~~~~r~aA~~~l~~la~~~p~~~--~~~l~~il~~i~~~l~D~~~~ 209 (1874)
+. ...++..+....+.+.. .+...+||||++.|+++....|..+ -+++|+++..+-...+||.+
T Consensus 876 ~~--~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~- 952 (997)
T 1vsy_5 876 KE--EQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM- 952 (997)
T ss_dssp CS--HHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-
T ss_pred Cc--hhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-
Confidence 12 12223333333333311 1122689999999999999999987 68999999999889999887
Q ss_pred HHHHHHHHHHHHHH
Q 000196 210 VRERAVEALRACLR 223 (1874)
Q Consensus 210 VR~aA~~al~~~~~ 223 (1874)
|+.++-++++.+-.
T Consensus 953 i~~tvk~tlseFkr 966 (997)
T 1vsy_5 953 TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999887643
No 131
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.55 E-value=0.92 Score=54.82 Aligned_cols=151 Identities=9% Similarity=-0.054 Sum_probs=105.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|..+..+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ...+|+..+++.+..-.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~----------~~~a~~~~g~~l~~~g~--d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA----------NYTVWHFRRVLLKSLQK--DLHEEMNYITAIIEEQP 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc----------CHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHHCC
Confidence 4788999999999999999999999999988763 46777788888888884 16899999998775311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
.. ..--..++.++..+|+| ++.+..|.+|++++|+.+.+|+..|......=
T Consensus 164 ~~---------------~~a~~~~g~~~~~~g~~-------------~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g- 214 (382)
T 2h6f_A 164 KN---------------YQVWHHRRVLVEWLRDP-------------SQELEFIADILNQDAKNYHAWQHRQWVIQEFK- 214 (382)
T ss_dssp TC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-
T ss_pred CC---------------HHHHHHHHHHHHHccCH-------------HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC-
Confidence 00 00112244555555443 45788999999999999999999887765421
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN 1778 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~ 1778 (1874)
. | ..|+..|-++|.+.+ . .......+-.+++.
T Consensus 215 ------~------~-~eAl~~~~~al~l~P-----~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 215 ------L------W-DNELQYVDQLLKEDV-----R-NNSVWNQRYFVISN 246 (382)
T ss_dssp ------C------C-TTHHHHHHHHHHHCT-----T-CHHHHHHHHHHHHH
T ss_pred ------C------h-HHHHHHHHHHHHhCC-----C-CHHHHHHHHHHHHH
Confidence 0 1 247888888888752 2 23334444455555
No 132
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.54 E-value=2.7 Score=48.51 Aligned_cols=253 Identities=11% Similarity=0.055 Sum_probs=149.1
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHH---HHHHHHHHHhhcCChHHHhHHHHHHhchh--hhhhcHHHHHH
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVA---VVEALIHINNQLHQHEAAVGILTYAQKEL--DVQLKESWYEK 1366 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~---~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~--~~~~~~~~~E~ 1366 (1874)
.+-+..-|.|..|+-+.+..-. .+|.. .-..|.+.|-.+|++|.+..-++...... ........+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc--------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcC
Confidence 3557788999999988765432 12333 33468899999999999887665321110 12223345778
Q ss_pred hcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhH
Q 000196 1367 LQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQM 1446 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~ 1446 (1874)
.|++++|++.|++.+....+|+. .+....+-.++.+.|+++.-....+. +.+.+ .....+....++|+++.-
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~----~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTLHQ---GDSLE----CMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHH----HHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHH----HHHHHHHHHHHCCCHHHH
Confidence 89999999999988764323432 34445555778899999877766654 22222 223445667778887776
Q ss_pred HHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCCCCCc
Q 000196 1447 AEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPVGNPV 1526 (1874)
Q Consensus 1447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~~~~~ 1526 (1874)
.+.+..+-.. .++.....- ..++-.+ .......+|.+
T Consensus 150 ~~~l~~~~~~-----------------~p~~~~~~l-------------~~a~~~l--~~~~~~~~eA~----------- 186 (291)
T 3mkr_A 150 RKELKKMQDQ-----------------DEDATLTQL-------------ATAWVSL--AAGGEKLQDAY----------- 186 (291)
T ss_dssp HHHHHHHHHH-----------------CTTCHHHHH-------------HHHHHHH--HHCTTHHHHHH-----------
T ss_pred HHHHHHHHhh-----------------CcCcHHHHH-------------HHHHHHH--HhCchHHHHHH-----------
Confidence 6544432110 000000000 0000000 00001111111
Q ss_pred hhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccc
Q 000196 1527 AEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHEN 1606 (1874)
Q Consensus 1527 ~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~ 1606 (1874)
...+.++.. .| ++...|...+....+.|+++.|...+.+++..+|.
T Consensus 187 -----------------------~~~~~~l~~-----~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----- 232 (291)
T 3mkr_A 187 -----------------------YIFQEMADK-----CS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG----- 232 (291)
T ss_dssp -----------------------HHHHHHHHH-----SC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----
T ss_pred -----------------------HHHHHHHHh-----CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Confidence 122222221 23 35778889999999999999999999999887663
Q ss_pred ccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1607 VRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1607 ~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
.|......+.+++..|+. ...+...++.++.
T Consensus 233 -----~~~~l~~l~~~~~~~g~~--~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 -----HPETLINLVVLSQHLGKP--PEVTNRYLSQLKD 263 (291)
T ss_dssp -----CHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHH
Confidence 477888889999999963 2334566666543
No 133
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.47 E-value=0.63 Score=51.16 Aligned_cols=159 Identities=17% Similarity=0.072 Sum_probs=109.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-----------CCcchHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-----------GEDLKRKEA 1635 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~-----------g~~~~~~~A 1635 (1874)
++...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+... | +..+|
T Consensus 37 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~~~~~~~~~~~~g---~~~~A 103 (217)
T 2pl2_A 37 QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR----------YLGGYMVLSEAYVALYRQAEDRERGKG---YLEQA 103 (217)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHHHTCSSHHHHHH---HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhhhhhhhccccc---CHHHH
Confidence 56899999999999999999999999999887763 356667777777777 7 46889
Q ss_pred HHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHH
Q 000196 1636 FARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAW 1715 (1874)
Q Consensus 1636 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w 1715 (1874)
+..+++.+..-. -.+.++..+|...... ...++.+..|++|++++ +...+|
T Consensus 104 ~~~~~~al~~~P----------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 104 LSVLKDAERVNP----------------------RYAPLHLQRGLVYALL------GERDKAEASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHCT----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHC-CCHHHH
T ss_pred HHHHHHHHHhCc----------------------ccHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcc-cchHHH
Confidence 999888765311 0133455556555543 34688999999999999 889999
Q ss_pred HHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHH
Q 000196 1716 HSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQI 1787 (1874)
Q Consensus 1716 ~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~ 1787 (1874)
..+|......= -...|+..|-+++... + ........+-.+++..|..++-..
T Consensus 155 ~~la~~~~~~g--------------~~~~A~~~~~~al~~~-----P-~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 155 SALAELYLSMG--------------RLDEALAQYAKALEQA-----P-KDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHHT--------------CHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHcC--------------CHHHHHHHHHHHHHhC-----C-CChHHHHHHHHHHHHccCHHHHHH
Confidence 99988755421 2247888899988875 2 234445566667777776655433
No 134
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.46 E-value=0.3 Score=58.26 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=69.0
Q ss_pred chhHHHHHHhhccc--ccCCCcchhhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhH
Q 000196 479 SAPVQLALQTLARF--NFKGHDLLEFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRR 556 (1874)
Q Consensus 479 ~~~~~~Al~~L~~~--~f~~~~l~~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (1874)
.+.+.+|-+.+..| .|+ .+.+-.-++.+.+.++++..||+.|++.+..+... . ...
T Consensus 42 ~k~K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~------------------~i~ 99 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--E------------------NLP 99 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--T------------------CHH
T ss_pred HHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--h------------------hhh
Confidence 44678999999988 453 23344445666778899999999999888777532 1 112
Q ss_pred HHHHHHHHHHHHHhcCCCh---hHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCc
Q 000196 557 LIEELVEKLLIAAVADADV---TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNP 631 (1874)
Q Consensus 557 ~~~~vl~~Ll~~~~~d~~~---~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p 631 (1874)
-+.+|+.+|+ .+|... .|+.+.++-+. .|+ ...+..+|..+...+..+|+.+++.|..-....|
T Consensus 100 kiaDvL~QlL---qtdd~~E~~~V~~sL~sllk----~Dp----k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~ 166 (507)
T 3u0r_A 100 RVADILTQLL---QTDDSAEFNLVNNALLSIFK----MDA----KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLP 166 (507)
T ss_dssp HHHHHHHHHT---TCCCHHHHHHHHHHHHHHHH----HCH----HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSC
T ss_pred hHHHHHHHHH---hccchHHHHHHHHHHHHHHh----cCh----HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcc
Confidence 2444444443 344322 23344444442 122 2245555544433456788888887765444333
No 135
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.43 E-value=0.49 Score=52.60 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=116.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|..++.+..+.|+++.|...+.++....+. .+.+.+..+.+++..|+ ..+|+..+++.+...
T Consensus 55 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 121 (243)
T 2q7f_A 55 EDAIPYINFANLLSSVNELERALAFYDKALELDSS----------AATAYYGAGNVYVVKEM---YKEAKDMFEKALRAG 121 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----------chHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC
Confidence 34788999999999999999999999988876542 36777888888888885 678999888876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. . ..++..+|.-.... ...++.+..|+++++.+|+...+|..+|......
T Consensus 122 ~~------------------~----~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 172 (243)
T 2q7f_A 122 ME------------------N----GDLFYMLGTVLVKL------EQPKLALPYLQRAVELNENDTEARFQFGMCLANE- 172 (243)
T ss_dssp CC------------------S----HHHHHHHHHHHHHT------SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-
T ss_pred CC------------------C----HHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-
Confidence 11 0 12233344433332 2457788999999999999989998888776542
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHV 1796 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~i 1796 (1874)
+ -...|++.|-+++... .........+-.+.+..|+..+....+++.+..-
T Consensus 173 ------~-------~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 173 ------G-------MLDEALSQFAAVTEQD------PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp ------T-------CCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred ------C-------CHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 1 1135677777777664 1223445666667777788777776666665433
No 136
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.40 E-value=1.2 Score=50.46 Aligned_cols=172 Identities=10% Similarity=0.002 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.++..+....+.|+++.|...+.++...+|. .+.+.+..+...+..|+ ..+|+..++..+. ..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~-~~- 67 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN----------SPYIYNRRAVCYYELAK---YDLAQKDIETYFS-KV- 67 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC----------CSTTHHHHHHHHHHTTC---HHHHHHHHHHHHT-TS-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHh-cc-
Confidence 456889999999999999999999999887653 24456677788888885 6899999988765 21
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
.+....++++..+|...... ...++.+..|+++++.+|+...+|...|..+...
T Consensus 68 -----------------~~~~~~~~~~~~lg~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~--- 121 (272)
T 3u4t_A 68 -----------------NATKAKSADFEYYGKILMKK------GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK--- 121 (272)
T ss_dssp -----------------CTTTCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT---
T ss_pred -----------------CchhHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---
Confidence 12233566677777776654 3578999999999999999999999999886641
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.-...|++.|-+++... +. .......+-...+..++..+....+++.+..-|.
T Consensus 122 -----------~~~~~A~~~~~~al~~~-----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 122 -----------GNFPLAIQYMEKQIRPT-----TT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp -----------TCHHHHHHHHGGGCCSS-----CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred -----------cCHHHHHHHHHHHhhcC-----CC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 12346788888777663 22 2222223321333344655655666665544443
No 137
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.37 E-value=0.25 Score=52.50 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=99.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+.+..+.|+++.|...+.++....+. .+.+....+...+..++ ...|+..++..+...
T Consensus 37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~---~~~a~~~~~~a~~~~ 103 (184)
T 3vtx_A 37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------SAEAYYILGSANFMIDE---KQAAIDALQRAIALN 103 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999988776542 46777788888888885 578888887765431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
... ..-...++.+|..+|+ .++.++.|+++++.+|+...+|+..|......
T Consensus 104 ~~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~- 154 (184)
T 3vtx_A 104 TVY---------------ADAYYKLGLVYDSMGE-------------HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK- 154 (184)
T ss_dssp TTC---------------HHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred ccc---------------hHHHHHHHHHHHHhCC-------------chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC-
Confidence 100 0111234555555444 46788999999999999999999999876541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
+ -...|++.|-++|.+.
T Consensus 155 ------g-------~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 155 ------G-------LRDEAVKYFKKALEKE 171 (184)
T ss_dssp ------T-------CHHHHHHHHHHHHHTT
T ss_pred ------C-------CHHHHHHHHHHHHhCC
Confidence 1 2347899999998874
No 138
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=95.24 E-value=0.21 Score=49.59 Aligned_cols=120 Identities=18% Similarity=0.089 Sum_probs=88.5
Q ss_pred HHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHH
Q 000196 1559 RALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFAR 1638 (1874)
Q Consensus 1559 R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~ 1638 (1874)
|...+.| +..+.|........+.|+++.|.....++...+|. .+.+.+..+..++..|+ ..+|+..
T Consensus 4 r~a~inP-~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~---~~~A~~~ 69 (126)
T 4gco_A 4 RLAYINP-ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE----------NAILYSNRAACLTKLME---FQRALDD 69 (126)
T ss_dssp ---CCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred HHHHHCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHhhHHHhhcc---HHHHHHH
Confidence 3334444 34778888899999999999999999999887663 46778888999999995 6899999
Q ss_pred HHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHH
Q 000196 1639 LQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSW 1718 (1874)
Q Consensus 1639 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~w 1718 (1874)
++..+.- .. -.++++..+|.-...+ ...++.+..|++|++++|+...++..+
T Consensus 70 ~~~al~~-~p---------------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 70 CDTCIRL-DS---------------------KFIKGYIRKAACLVAM------REWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHH-CT---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHh-hh---------------------hhhHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 9887642 11 0133455555544443 245788999999999999999998877
Q ss_pred HH
Q 000196 1719 AL 1720 (1874)
Q Consensus 1719 A~ 1720 (1874)
+.
T Consensus 122 ~~ 123 (126)
T 4gco_A 122 RN 123 (126)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 139
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.23 E-value=1.8 Score=50.46 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|..++.+..+.|+++.|...+.++....+..... ...+.+....+.+++..|+ ..+|+..+++.+....
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR----AVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH
Confidence 36689999999999999999999998877543211000 0114556677788888885 6889999888665332
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1874)
. ..+....+.++..+|...... ...++....|++|.++.++
T Consensus 295 ~----------------~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 295 E----------------LKDRIGEGRACWSLGNAYTAL------GNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp H----------------HTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHC---
T ss_pred h----------------cCCcHHHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHh
Confidence 1 112334566666677766554 3468888999999888764
No 140
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.22 E-value=2.9 Score=46.54 Aligned_cols=170 Identities=15% Similarity=0.075 Sum_probs=120.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+......|+++.|...+.++...++. .+.+.+..+..++..|+ ..+|+..+++.+....
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~ 102 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS----------SADAHAALAVVFQTEME---PKLADEEYRKALASDS 102 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCc
Confidence 3788999999999999999999999998876542 36777888888888885 6889999988765321
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh--hcccchHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ--CATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~--~~~~~~k~w~~wA~~n~~~ 1725 (1874)
. ...++..+|.-.... ...++....|.++.+ ..|....+|..+|......
T Consensus 103 ~----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 154 (252)
T 2ho1_A 103 R----------------------NARVLNNYGGFLYEQ------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM 154 (252)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT
T ss_pred C----------------------cHHHHHHHHHHHHHH------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc
Confidence 0 022333334333332 245778899999998 7788888888888765431
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.-...|+..|-+++... .........+-.+++..|+..+....+++.+..-|.
T Consensus 155 --------------g~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 207 (252)
T 2ho1_A 155 --------------KKPAQAKEYFEKSLRLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207 (252)
T ss_dssp --------------TCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC
T ss_pred --------------CCHHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 12346788888888774 223455677777888888888877777777665543
No 141
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.21 E-value=6 Score=45.54 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=82.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+.+..+.|+++.|...+.++...+|. .....+..+-..+..+. .+..+|+..+++++...
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~----------~~~~~l~~a~~~l~~~~-~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED----------ATLTQLATAWVSLAAGG-EKLQDAYYIFQEMADKC 196 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC----------cHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHhC
Confidence 55788999999999999999999999998876542 22333333322332321 15789999999988652
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
... ..--..+|.++..+|+| ++....|++|++.+|+...+|..++.+...
T Consensus 197 p~~---------------~~~~~~la~~~~~~g~~-------------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 197 SPT---------------LLLLNGQAACHMAQGRW-------------EAAEGVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp CCC---------------HHHHHHHHHHHHHTTCH-------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CCc---------------HHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 110 00012245556555555 678899999999999999999999876543
No 142
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.20 E-value=1.2 Score=55.73 Aligned_cols=205 Identities=17% Similarity=0.226 Sum_probs=115.7
Q ss_pred hccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHH---HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHH
Q 000196 595 LAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALR---RHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1874)
Q Consensus 595 L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1874)
+..++.+..|+..++.+++.+|..++++|..|+..+|..+...+. .-+..++.-| .+ .....|.+++.+|..+.+
T Consensus 118 ~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL-~d-~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 118 IKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL-AD-SREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-GC-SSHHHHHHHHHHHHHHHT
T ss_pred HcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-hC-chHHHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999999998764332222 1122223223 33 334567777777777776
Q ss_pred hCccc-----cccchHHHHHHH-------------------HHHhhccC----------------------C--CCCChh
Q 000196 672 NCERL-----IRPYIAPIHKAL-------------------VARLLEGT----------------------G--INANNG 703 (1874)
Q Consensus 672 ~~~~~-----~~py~~~il~~l-------------------l~~l~~~~----------------------~--~~~~~~ 703 (1874)
..+.. +..-++.++..+ ...++... . ......
T Consensus 196 ~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Q 275 (651)
T 3grl_A 196 SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQ 275 (651)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHH
T ss_pred CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHH
Confidence 54421 111122222211 11111100 0 001111
Q ss_pred HHHH---HHHHHHHHHHhcccc--h-----hhcHHhHHHHHHHHHhc-CcchhhHHHHHHHHHHHHhhccc-------cc
Q 000196 704 IISG---VLVTVGDLARVGGFG--M-----RQYISELMPLIVEALLD-GAAVTKREVAVSTLGQVVQSTGY-------VI 765 (1874)
Q Consensus 704 v~~~---~~~~l~~La~~~g~~--~-----~~~~~~llp~l~~~l~d-~~~~~~r~~A~~~Lg~l~~~~~~-------~i 765 (1874)
...+ ++..+..+..-++.. . .-+-..+++.+++.+.. ......|..|+.++|.++++... .-
T Consensus 276 k~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~ 355 (651)
T 3grl_A 276 KVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355 (651)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhcc
Confidence 2223 344444444332210 1 11122346666666543 22456888999999998876532 11
Q ss_pred cccc-cchHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 000196 766 TPYN-EYPQLLGLLLKMLNGELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 766 ~p~~-~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~l 801 (1874)
.|+. ..|.++..|+.++.+.+...+|.+++.|+...
T Consensus 356 vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay 392 (651)
T 3grl_A 356 APSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCF 392 (651)
T ss_dssp ESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 2332 24778888888887667889999999988764
No 143
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.19 E-value=0.5 Score=52.26 Aligned_cols=156 Identities=15% Similarity=0.036 Sum_probs=113.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~ 106 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN----------LANAYIGKSAAYRDMKN---NQEYIATLTEGIKAV 106 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS----------HHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc----------hHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHC
Confidence 45677888999999999999999999999887653 36778888999999995 689999999877532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~~ 1724 (1874)
... ......++.++..+|.+.... ...++.+..|++|++.+|+ ...+|..+|..+..
T Consensus 107 p~~---------------~~~~~~~~~~~~~~g~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 107 PGN---------------ATIEKLYAIYYLKEGQKFQQA------GNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp TTC---------------HHHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCc---------------HHHHHHHHHHHHHHhHHHHHh------ccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 210 111244678899999998765 4689999999999999999 88999999988765
Q ss_pred HHHhhhc----cCCC---------CchhhHHHHHHHHHHHHHhhc
Q 000196 1725 VMSHYTL----RGLP---------SVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1725 ~~~~~~~----~~~~---------~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.-...-. -... .........|+..|-+++.+.
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4332100 0000 011223467788888887774
No 144
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.02 E-value=1.2 Score=49.65 Aligned_cols=172 Identities=13% Similarity=0.026 Sum_probs=120.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+.+..+.|+++.|...+.++....+. .+.+....+..+...|+ ..+|+..+++.+. .
T Consensus 69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~-~ 134 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR----------NARVLNNYGGFLYEQKR---YEEAYQRLLEASQ-D 134 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTT-C
T ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----------cHHHHHHHHHHHHHHhH---HHHHHHHHHHHHh-C
Confidence 34678999999999999999999999998876542 35677788888888885 6889998887654 0
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. ....+.++..+|...... ...++....|.++.+.+|+...+|..+|..+...
T Consensus 135 ~~-------------------~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~- 188 (252)
T 2ho1_A 135 TL-------------------YPERSRVFENLGLVSLQM------KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE- 188 (252)
T ss_dssp TT-------------------CTTHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-
T ss_pred cc-------------------CcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc-
Confidence 00 111344455555555443 3467889999999999999999999888776541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.-...|+..|-+++... .........+..+.+..|+..+....+++.+..-|
T Consensus 189 -------------g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 189 -------------REYVPARQYYDLFAQGG------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp -------------TCHHHHHHHHHHHHTTS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred -------------CCHHHHHHHHHHHHHhC------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 12346777888877653 22344455666667777887776666665544333
No 145
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.02 E-value=2.1 Score=46.53 Aligned_cols=169 Identities=12% Similarity=-0.028 Sum_probs=104.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..++..|+ ..+|+..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~~~ 72 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK----------NELAWLVRAEIYQYLKV---NDKAQESFRQALSIK 72 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC
Confidence 34677888888888888888888888877765442 35666777777777774 577888877765431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh--hcccchHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ--CATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~--~~~~~~k~w~~wA~~n~~ 1724 (1874)
.. .+.++..+|.-..... ...++.+..|+++++ .+|....+|+.+|.....
T Consensus 73 ~~----------------------~~~~~~~l~~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 73 PD----------------------SAEINNNYGWFLCGRL-----NRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp TT----------------------CHHHHHHHHHHHHTTT-----CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred CC----------------------ChHHHHHHHHHHHHhc-----CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 10 0223333444333220 245677788888887 556666777777766543
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccC
Q 000196 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAH 1795 (1874)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ 1795 (1874)
. .-...|+..|-+++... + ........+-.+.+..|+..+....+++.+..
T Consensus 126 ~--------------~~~~~A~~~~~~~~~~~-----~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 126 Q--------------GQFGLAEAYLKRSLAAQ-----P-QFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp T--------------TCHHHHHHHHHHHHHHS-----T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred c--------------CCHHHHHHHHHHHHHhC-----C-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 12235677777777663 1 22344556666667777776666655555443
No 146
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.00 E-value=0.006 Score=68.22 Aligned_cols=16 Identities=31% Similarity=0.142 Sum_probs=9.4
Q ss_pred hhccCCChHHHHHHHH
Q 000196 509 LYLDDEDKATRKDAAL 524 (1874)
Q Consensus 509 ~~l~~~~~~VR~aAa~ 524 (1874)
.++.|+++.||.+|+.
T Consensus 57 ~ll~d~~~~VR~~AA~ 72 (244)
T 1lrv_A 57 QYLADPFWERRAIAVR 72 (244)
T ss_dssp GGTTCSSHHHHHHHHT
T ss_pred HHhcCCCHHHHHHHHH
Confidence 4455666666666554
No 147
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.95 E-value=0.85 Score=57.14 Aligned_cols=189 Identities=13% Similarity=0.096 Sum_probs=133.4
Q ss_pred CcccHHHHHHHHHHHHhcCCh-hHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 000196 1565 PTEDVETWLKFASLCRKSGRI-SQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLA 1643 (1874)
Q Consensus 1565 ~~e~~~~wlk~a~laRk~g~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~ 1643 (1874)
+.++...|...+......|++ +.|...+.++...+|. .+...+..+.++|..|+ ..+|+..++..+
T Consensus 98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al 164 (474)
T 4abn_A 98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE----------LVEAWNQLGEVYWKKGD---VTSAHTCFSGAL 164 (474)
T ss_dssp CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Confidence 446789999999999999999 9999999999887653 46788889999999995 689999988865
Q ss_pred HHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCC---CCCCHHHHHHHHHHHHhhcccchHHHHHHHH
Q 000196 1644 MELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGL---DDESIPEIIAAYRNATQCATKWGKAWHSWAL 1720 (1874)
Q Consensus 1644 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~---~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~ 1720 (1874)
.. . +. +.++..+|.-......+. .....++.+..|++|++++|+...+|+.+|.
T Consensus 165 ~~-~--------------------p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 221 (474)
T 4abn_A 165 TH-C--------------------KN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN 221 (474)
T ss_dssp TT-C--------------------CC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hh-C--------------------CC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 32 0 01 244555555443320000 0024578899999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1721 FNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1721 ~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.+...+-.. +. ...-...|+..|-+++.+.+. ..........+=.+++..|+.++....+++.+..-|-
T Consensus 222 ~~~~~~~~~---~~---~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 222 AYLSLYFNT---GQ---NPKISQQALSAYAQAEKVDRK---ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHHHHHHT---TC---CHHHHHHHHHHHHHHHHHCGG---GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhh---cc---ccchHHHHHHHHHHHHHhCCC---cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 887652211 10 123566899999999988521 0034555666777778888888877777776654443
No 148
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.90 E-value=1 Score=50.93 Aligned_cols=174 Identities=10% Similarity=0.046 Sum_probs=108.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...+...+....+.|+++.|...+.++....|... ..+.+.+..+...+..|+ ..+|+..++.++...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~ 82 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-------WAADAQFYLARAYYQNKE---YLLAASEYERFIQIY 82 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-------chHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999987765310 126778889999999995 689999999987643
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCC--CCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH--
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPP--GLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN-- 1722 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~--~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n-- 1722 (1874)
... .....+++.+|.-.....+ .......++.+..|+++++.+|+...++..++...
T Consensus 83 p~~-------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~ 143 (261)
T 3qky_A 83 QID-------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL 143 (261)
T ss_dssp TTC-------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred CCC-------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH
Confidence 211 1123334444443333100 00123568899999999999998766664332221
Q ss_pred --------HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc
Q 000196 1723 --------TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH 1779 (1874)
Q Consensus 1723 --------~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~ 1779 (1874)
+.+-..+... .-...|+..|-+++...+ +.....+...++-.+++..
T Consensus 144 ~~~~~~~~~~la~~~~~~-------g~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 144 RAKLARKQYEAARLYERR-------ELYEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-------cCHHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHh
Confidence 1111111111 123578888888887642 1122444566666666655
No 149
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.84 E-value=1.9 Score=50.17 Aligned_cols=175 Identities=10% Similarity=0.077 Sum_probs=117.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChH-HHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQ-VMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~-v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
+....|+.++.+..+.|+++.|.....++...+|. .+. +.+.++.++...|+ ..+|...+++.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI----------DPTLVYIQYMKFARRAEG---IKSGRMIFKKARED 163 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS----------CTHHHHHHHHHHHHHHHC---HHHHHHHHHHHHTS
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc----------CccHHHHHHHHHHHHhcC---HHHHHHHHHHHHhc
Confidence 56889999999999999999999999999886542 244 77888888888885 57888888876531
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
.. .. +.++...|.-.... ....++....|.+|++.+|+...+|..+|.+..+
T Consensus 164 ~p------------------~~----~~~~~~~a~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~- 215 (308)
T 2ond_A 164 AR------------------TR----HHVYVTAALMEYYC-----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH- 215 (308)
T ss_dssp TT------------------CC----THHHHHHHHHHHHT-----SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred CC------------------CC----HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 10 01 22232222211111 1457899999999999999999999999877432
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.+ -...|+..|-+++.... ..++....-..++..+...+|+..++....++.+...|
T Consensus 216 ------~g-------~~~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 216 ------LN-------EDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp ------TC-------CHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred ------CC-------CHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence 11 23477888888887410 01112233345556666778888777766666655444
No 150
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.75 E-value=2.2 Score=52.97 Aligned_cols=116 Identities=12% Similarity=0.054 Sum_probs=70.4
Q ss_pred HHHHHHHHHhccchhhhhhhccchhccccc---ccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-------hhh
Q 000196 1288 IRLLGALAEKCRAFAKALHYKEMEFEGARS---NRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-------LDV 1357 (1874)
Q Consensus 1288 ~~~l~~~a~~c~a~a~AL~y~E~~~~~~~~---~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-------~~~ 1357 (1874)
+..||.+-..-|.|..|+-+++....-.+. ...++....+...|..+|..+|+.+.+...+..+... ...
T Consensus 54 yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~ 133 (472)
T 4g1t_A 54 CNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRI 133 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccch
Confidence 346788888889999999888765431110 0012223345667899999999999998776643211 001
Q ss_pred hhcHH-----H-HHHh--cCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000196 1358 QLKES-----W-YEKL--QRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1358 ~~~~~-----~-~E~l--g~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
..... | +-++ +++++|+++|++.+...|+. .+...++..++..+|.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~---~~~~~~~~~~~~~l~~ 187 (472)
T 4g1t_A 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN---PEFTSGLAIASYRLDN 187 (472)
T ss_dssp CCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcC
Confidence 11111 1 2233 46999999999998765543 3455555555544443
No 151
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=94.73 E-value=1.1 Score=49.96 Aligned_cols=173 Identities=11% Similarity=0.038 Sum_probs=112.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+....+.|+++.|...+.++...+ . .+.+.+..+..++..|+ ..+|+..++..+....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~----------~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~~ 69 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K----------DITYLNNRAAAEYEKGE---YETAISTLNDAVEQGR 69 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c----------cHHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCc
Confidence 46789999999999999999999999988764 1 36778889999999995 6899999998765322
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc------------------
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT------------------ 1709 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~------------------ 1709 (1874)
.. ..+....+.++..+|...... ...++.+..|++++++++
T Consensus 70 ~~---------------~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 70 EM---------------RADYKVISKSFARIGNAYHKL------GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKA 128 (258)
T ss_dssp HT---------------TCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred cc---------------ccchHHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHH
Confidence 11 112233466666677666554 346777777777777544
Q ss_pred --------cchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCC
Q 000196 1710 --------KWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGA 1781 (1874)
Q Consensus 1710 --------~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~ 1781 (1874)
....+|...|...... .-...|+..|-+++...+ ........+-.+.+..|+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 129 EAEAYVNPEKAEEARLEGKEYFTK--------------SDWPNAVKAYTEMIKRAP------EDARGYSNRAAALAKLMS 188 (258)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCcchHHHHHHHHHHHHHh--------------cCHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhCC
Confidence 4444444444433220 123467777777776641 223445556666677777
Q ss_pred cHHHHHHHHhcccC
Q 000196 1782 TEEVQIALQKGFAH 1795 (1874)
Q Consensus 1782 ~~~v~~~~~~~~~~ 1795 (1874)
.++....+++.+..
T Consensus 189 ~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 189 FPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655543
No 152
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.67 E-value=0.48 Score=49.76 Aligned_cols=150 Identities=16% Similarity=0.127 Sum_probs=104.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----h-hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----D-VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----~-~~~~~~~~ 1364 (1874)
.++....+.+.|..|+.+++...... +........+..+|...|+.+.+...+....... . .......+
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45777778889999998888766432 3345677789999999999999988887543211 1 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
.+.|+|++|+..|++.+...++. ......+..++..+|+|+.-....+... .+... ......+.+.+..|+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG----KVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHhcCcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCC
Confidence 88999999999999988654432 3456778889999999987766655422 11122 223455678888999
Q ss_pred hhhHHHHHhh
Q 000196 1443 WDQMAEYVSR 1452 (1874)
Q Consensus 1443 Wd~~~~~~~~ 1452 (1874)
|+.-.++...
T Consensus 160 ~~~A~~~~~~ 169 (186)
T 3as5_A 160 HEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987776554
No 153
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=94.66 E-value=1 Score=47.23 Aligned_cols=165 Identities=12% Similarity=-0.004 Sum_probs=108.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+....+.|+++.|...+.++....+ ..+.+.+..+..++..|+ ..+|+..+++.+....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADA----------FDVDVALHLGIAYVKTGA---VDRGTELLERSLADAP 73 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS----------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----------cChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCC
Confidence 366788889999999999999998877765543 236677778888888885 6789988888765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
. ...++..+|...... ...++....|+++.+.+|+...+|..+|......
T Consensus 74 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 123 (186)
T 3as5_A 74 D----------------------NVKVATVLGLTYVQV------QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-- 123 (186)
T ss_dssp T----------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred C----------------------CHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc--
Confidence 0 012233333333322 2346788889999999998888888888765431
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
+ -...|+..|-+++... .........+-.+.+..|+..+....+++.+
T Consensus 124 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 124 -----G-------RFDEAIDSFKIALGLR------PNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp -----T-------CHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----C-------cHHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 2346777777777764 1223445556666677777766655555543
No 154
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.55 E-value=6.2 Score=47.38 Aligned_cols=112 Identities=13% Similarity=0.007 Sum_probs=72.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch------h-----
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE------L----- 1355 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~------~----- 1355 (1874)
.+|....+.|.|..|+.+++......+ .++ ......|..+|...|+++.+...++.+-.. .
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 568888899999999999988765321 122 245667889999999999998877643211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccC---CCchhHHhHhhHhHHHHHhhC
Q 000196 1356 DVQLKESWYEKLQRWDDALKAYTNKASQAS---NPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1356 ~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~---~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
.....+..|...|+|++|+..|++.+...+ ++.........+-.++..+|+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 011234458899999999999998775321 111112233445556666666
No 155
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.51 E-value=2 Score=47.16 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=107.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+....+.|+++.|...+.++...+|. ..+.+.+..+...+..|+ ..+|+..++..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~- 72 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN---------QDSVTAYNCGVCADNIKK---YKEAADYFDIAIKKN- 72 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---------CCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC---------CCcHHHHHHHHHHHHhhc---HHHHHHHHHHHHHhC-
Confidence 4688999999999999999999999998887641 124566668888889995 689999998876421
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
+..+.++..+|.-.... ...++.+..|+++++.+|+....+..++.+...+-.
T Consensus 73 ---------------------p~~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 125 (228)
T 4i17_A 73 ---------------------YNLANAYIGKSAAYRDM------KNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQ 125 (228)
T ss_dssp ---------------------CSHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred ---------------------cchHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhH
Confidence 11344455555555443 346788999999999999988665555544333322
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc--hHHhHHHHHHHHHhcC
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD--SLQDILRLLTLWFNHG 1780 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~--~~q~~~RlLtLwf~~g 1780 (1874)
.+... .-...|++.|-+++.+. .. .......+-.+++..|
T Consensus 126 ~~~~~-------~~~~~A~~~~~~al~~~------p~~~~~~~~~~l~~~~~~~~ 167 (228)
T 4i17_A 126 KFQQA-------GNIEKAEENYKHATDVT------SKKWKTDALYSLGVLFYNNG 167 (228)
T ss_dssp HHHHT-------TCHHHHHHHHHHHTTSS------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-------ccHHHHHHHHHHHHhcC------CCcccHHHHHHHHHHHHHHH
Confidence 22111 23458999999999874 23 2344444555555544
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=94.42 E-value=0.73 Score=43.93 Aligned_cols=114 Identities=11% Similarity=0.046 Sum_probs=86.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+..+...|+++.|...+.++....|. .+.+.+..+...+..|+ ..+|+..+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH----------NHVLYSNRSAAYAKKGD---YQKAYEDGCKTVDLKP 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC----------cHHHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCc
Confidence 4678999999999999999999999998876542 36778888999999995 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
. ...++..+|...... ...++....|+++.+.+|+...+|..++...
T Consensus 70 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 D----------------------WGKGYSRKAAALEFL------NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred c----------------------cHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 0 123344445444433 2467888999999999999999999888653
No 157
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.39 E-value=1.8 Score=47.83 Aligned_cols=169 Identities=13% Similarity=0.034 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|+..+....+.|+++.|...+.++...+|. .+.+.+..+..++..|+ ..+|+..++..+....
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE----------DAIPYINFANLLSSVNE---LERALAFYDKALELDS 88 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC
Confidence 3678899999999999999999999998876542 36778888999999995 6899999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMS 1727 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~ 1727 (1874)
. .+.++..+|.-.... ...++.+..|+++.+.+|+...+|+..|......
T Consensus 89 ~----------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-- 138 (243)
T 2q7f_A 89 S----------------------AATAYYGAGNVYVVK------EMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-- 138 (243)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT--
T ss_pred c----------------------chHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--
Confidence 0 123334444433332 2457888999999999999999999888775531
Q ss_pred hhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1728 HYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1728 ~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
+ -...|+..|-+++... .........+-.+++..|+.++....+++.+..-|
T Consensus 139 -----~-------~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 190 (243)
T 2q7f_A 139 -----E-------QPKLALPYLQRAVELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190 (243)
T ss_dssp -----S-------CHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT
T ss_pred -----c-------cHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 1 2346788888888764 22344566777788888988887777777665444
No 158
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=94.33 E-value=16 Score=46.17 Aligned_cols=205 Identities=13% Similarity=0.129 Sum_probs=137.5
Q ss_pred ccHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHhc-CCCCCCcccccCCCChHHHHHHHHHHHhcCCcch
Q 000196 1567 EDVETWLKFASLCRK-------SGRIS-------QARSTLVKLLQ-YDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLK 1631 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk-------~g~~~-------~a~~~L~~l~~-~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~ 1631 (1874)
.+.+.|+.++.+..+ .|+++ .|...+.++.. ..|. .+.+.+.++.+....|+
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~----------~~~l~~~~~~~~~~~g~--- 336 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK----------NMLLYFAYADYEESRMK--- 336 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS----------CHHHHHHHHHHHHHTTC---
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc----------cHHHHHHHHHHHHhcCC---
Confidence 458999999999986 69987 78888888875 4442 46788889999998885
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1632 ~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
..+|...+++.+.. .. .+ .+.++..+|.+.... ...++....|.+|++..|..
T Consensus 337 ~~~A~~~~~~al~~-~p-----------------~~---~~~~~~~~~~~~~~~------~~~~~A~~~~~~Al~~~~~~ 389 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI-ED-----------------ID---PTLVYIQYMKFARRA------EGIKSGRMIFKKAREDARTR 389 (530)
T ss_dssp HHHHHHHHHHHHHS-SS-----------------SC---HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHhCc-cc-----------------cC---chHHHHHHHHHHHHh------cCHHHHHHHHHHHHhccCCc
Confidence 67899988887652 10 01 124566777766543 24678899999999999888
Q ss_pred hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000196 1712 GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1874)
Q Consensus 1712 ~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1874)
+..|..+|...+.. .+ -...|.+.|-+++...+ ........+..+....|+..+....+++
T Consensus 390 ~~~~~~~a~~~~~~------~~-------~~~~A~~~~e~al~~~p------~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 390 HHVYVTAALMEYYC------SK-------DKSVAFKIFELGLKKYG------DIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp THHHHHHHHHHHHH------TC-------CHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH------cC-------ChhHHHHHHHHHHHHCC------CCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 78877777654331 11 12467777888887642 2344456666667778888888888888
Q ss_pred cccCC--Chh----hHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCch
Q 000196 1792 GFAHV--NIN----TWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQ 1836 (1874)
Q Consensus 1792 ~~~~i--p~~----~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPq 1836 (1874)
.+... ++. .|..++-- -.+.+ +. ..+..+..+..+.+|.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~-e~~~G--~~---~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAF-ESNIG--DL---ASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHH-HHHSS--CH---HHHHHHHHHHHHHTHH
T ss_pred HHhccCCCHHHHHHHHHHHHHH-HHHcC--CH---HHHHHHHHHHHHHCch
Confidence 77643 333 67665532 22333 31 3355666667777773
No 159
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=94.25 E-value=1.1 Score=43.95 Aligned_cols=117 Identities=12% Similarity=0.086 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|...+..+.+.|+++.|...+.++...++. .+.+.+..+.++...|+ ..+|+..+++.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~ 80 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK----------DAKLYSNRAACYTKLLE---FQLALKDCEECIQLE 80 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT----------CHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhC
Confidence 45889999999999999999999999998876542 36777888888888884 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
.. .+.++..+|.-.... ...++....|+++.+.+|+...+|..++.....
T Consensus 81 ~~----------------------~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 81 PT----------------------FIKGYTRKAAALEAM------KDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred CC----------------------chHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 10 122344444433332 245788899999999999999999988876543
No 160
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.23 E-value=2.8 Score=45.37 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=111.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~-g~~~~~~~Al~~l~~~~~~ 1645 (1874)
++...|...+.+..+.|+++.|...+.++....+. .+.+....+.++... |+ ..+|+..++..+.
T Consensus 40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~- 105 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD----------SAEINNNYGWFLCGRLNR---PAESMAYFDKALA- 105 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHT-
T ss_pred cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhcCc---HHHHHHHHHHHHc-
Confidence 34678899999999999999999999998876542 356777888888888 84 6889999988765
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
.... .....++..+|...... ...++.+..|.++++.+|+...+|..+|..+...
T Consensus 106 ~~~~-------------------~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 106 DPTY-------------------PTPYIANLNKGICSAKQ------GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp STTC-------------------SCHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred CcCC-------------------cchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 1100 11234445555554443 3467889999999999999999999988876542
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHH
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIAL 1789 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~ 1789 (1874)
+ -...|+..|-+++... +.........+..+....|...+....+
T Consensus 161 -------~-------~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 161 -------G-------QLGDADYYFKKYQSRV-----EVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp -------T-------CHHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------C-------CHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 1236677777777664 2022333344445556666655544333
No 161
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.18 E-value=1 Score=43.90 Aligned_cols=116 Identities=13% Similarity=0.054 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+..+...|+++.|...+.++....+. .+.+.+..+.+++..|+ ..+|+..++..+....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~ 77 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA----------NAVYFCNRAAAYSKLGN---YAGAVQDCERAICIDP 77 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhhc---hHHHHHHHHHHHhcCc
Confidence 4678999999999999999999999998876542 36777888888888885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
. ...++..+|...... ...++....|+++.+.+|+...+|+.+|.....
T Consensus 78 ------------------~----~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 78 ------------------A----YSKAYGRMGLALSSL------NKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ------------------T----CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ------------------c----CHHHHHHHHHHHHHh------CCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 0 123455555555443 346788999999999999999999988877654
No 162
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.94 E-value=0.58 Score=61.61 Aligned_cols=149 Identities=14% Similarity=0.059 Sum_probs=102.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----~~~~~~~~ 1364 (1874)
.||.+..+-|.|..|+-+.+....-. ++.....-.|..+|.++|+.+.|.-.++.+-. ..+ ....+..|
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l~------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 46777777788888888887766532 34467778899999999999999887775432 111 11234458
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc--CCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYW--TPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~--~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
.++|+|++|+++|++.++..++. .+....+-.++..+|+++.-....+... .+...+.. ...+.+...+|+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~----~~L~~~l~~~g~ 160 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY----CNLAHCLQIVCD 160 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH----HHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH----hhhhhHHHhccc
Confidence 89999999999999988765443 4567778889999999987665554321 22222222 234567888999
Q ss_pred hhhHHHHHh
Q 000196 1443 WDQMAEYVS 1451 (1874)
Q Consensus 1443 Wd~~~~~~~ 1451 (1874)
|+.-.+...
T Consensus 161 ~~~A~~~~~ 169 (723)
T 4gyw_A 161 WTDYDERMK 169 (723)
T ss_dssp CTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 998766544
No 163
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=93.93 E-value=1.3 Score=42.61 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=86.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|...+....+.|+++.|...+.++....+. .+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----------NAEAWYNLGNAYYKQGD---YDEAIEYYQKALELD 73 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC----------cHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhC
Confidence 34688999999999999999999999998876542 35677788888888885 688999988876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.. . ...+..+|...... ...++....|+++.+.+|+...++..+|....
T Consensus 74 ~~------------------~----~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 74 PN------------------N----AEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp TT------------------C----HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred Cc------------------c----HHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 10 0 22344445444433 24678899999999999999999988887654
No 164
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.89 E-value=0.27 Score=48.74 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hh----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-EL----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~----~~~~~~~~~ 1364 (1874)
..|....+-|.|..|+.+.+..+... +......-.+..+|..+|+.+.+...++.+-. .. ..-..+..|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD------PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45778888899999998887766432 34456677788888888888887776664322 10 011234457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHH
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCL 1401 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl 1401 (1874)
.++|+|++|+..|++.++-.|+. .+...++-+||
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~---~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSN---EEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCC---HHHHHHHHHhc
Confidence 88888888888888887654443 34444444553
No 165
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=93.88 E-value=0.27 Score=54.35 Aligned_cols=193 Identities=10% Similarity=0.051 Sum_probs=110.7
Q ss_pred hHHHHHHHhCCCCH--HHHHHHHHHHHhhhcCCcCccchHHH-HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcc-
Q 000196 600 CLSAIFAALNDEDF--DVREYAISVAGRLSEKNPAYVLPALR-RHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER- 675 (1874)
Q Consensus 600 ~l~~L~~~l~D~~~--~VR~~a~~~l~~l~~~~p~~v~p~l~-~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~- 675 (1874)
.++.++..++.+++ +++..|...+..++..++..-.-... ..+..++. +..+ ++...++.|+++|..++....+
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~-lL~s-~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQ-LLKV-QNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHH-GGGC-CCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHH-HHcC-CCHHHHHHHHHHHHHHHhCCHHH
Confidence 36667777776666 88888888888888766432100011 11222333 3345 5788999999999999864332
Q ss_pred --ccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHh-------c------
Q 000196 676 --LIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALL-------D------ 740 (1874)
Q Consensus 676 --~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~-------d------ 740 (1874)
.+.. ...++.|+..++.. .+..++..+..+|-.|+...... ......-+|.+++.+. +
T Consensus 87 k~~I~~--~GaI~~Lv~lL~~~----~~~~~~e~a~~aL~nLS~~~~~k-~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~ 159 (233)
T 3tt9_A 87 KLEVAE--LNGVPRLLQVLKQT----RDLETKKQITGLLWNLSSNDKLK-NLMITEALLTLTENIIIPFSGWPEGDYPKA 159 (233)
T ss_dssp HHHHHH--TTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTSGGGH-HHHHHHHHHHHCCCCCHHHHCCCGGGCCCC
T ss_pred HHHHHH--cCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcChhhH-HHHHhccHHHHHHHHhccccCCcccccccc
Confidence 1211 13566777777642 26778888888888887543211 1223344666655331 1
Q ss_pred --CcchhhHHHHHHHHHHHHhhccccccccccchHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHh
Q 000196 741 --GAAVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLLLKMLNG-----ELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 741 --~~~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~-----~~~~~vr~~al~~lg~l 801 (1874)
..+.+++.+|..+|..++......=.-..+.+.+++.|+.+++. ..+.+.++.++.+|.-+
T Consensus 160 ~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 160 NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 12457889999999988754211101111235577777777753 12345556655555443
No 166
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.84 E-value=2.3 Score=51.22 Aligned_cols=141 Identities=8% Similarity=0.050 Sum_probs=98.8
Q ss_pred ccHHHHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGR-ISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
++...|...+.+..+.|+ ++.|...+.++...+|. .+.+.+-.+.++...|+ ..+|+..+++.+..
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~----------~~~a~~~~g~~~~~~g~---~~eAl~~~~kal~l 195 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK----------NYQVWHHRRVLVEWLRD---PSQELEFIADILNQ 195 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---CTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHh
Confidence 346778888888888997 99999999999988763 36677777778878885 46799988887653
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
-... ..--..++.++..+|+| ++.+..|.+|++++|++..+|+..|.....+
T Consensus 196 dP~~---------------~~a~~~lg~~~~~~g~~-------------~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 196 DAKN---------------YHAWQHRQWVIQEFKLW-------------DNELQYVDQLLKEDVRNNSVWNQRYFVISNT 247 (382)
T ss_dssp CTTC---------------HHHHHHHHHHHHHHTCC-------------TTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CccC---------------HHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 1100 00112345555555554 4578999999999999999999999876542
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
... ........++..|-++|.+.
T Consensus 248 ~~~--------~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 248 TGY--------NDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp TCS--------CSHHHHHHHHHHHHHHHHHS
T ss_pred cCc--------chHHHHHHHHHHHHHHHHHC
Confidence 210 01122445578999999885
No 167
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=93.57 E-value=1.4 Score=52.56 Aligned_cols=180 Identities=11% Similarity=0.053 Sum_probs=105.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++...+|. .+.+....+..++..|+ ..+|+..+++.+....
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p 164 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPN----------NLKALMALAVSYTNTSH---QQDACEALKNWIKQNP 164 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHcccc---HHHHHHHHHHHHHhCc
Confidence 4678899999999999999999999998877552 36777888889999995 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~~~ 1725 (1874)
..... .....-.+.++..+|..... ....++.+..|+++++.+|+ ...+|..+|......
T Consensus 165 ~~~~~------------~~~~~~~~~~~~~l~~~~~~------~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 165 KYKYL------------VKNKKGSPGLTRRMSKSPVD------SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp HHHCC-------------------------------C------CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred cchHH------------HhhhccchHHHHHHHHHHhh------hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 00000 00000011122222222221 12345667777777777777 667777777654431
Q ss_pred HHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1726 MSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1726 ~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.-...|+..|-+++... .........+-.+++..|...+....+++.+..-|.
T Consensus 227 --------------g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 227 --------------GEFNRAIDAFNAALTVR------PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp --------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred --------------CCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 12235666666666653 122334555666666677766666666665544443
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.54 E-value=0.69 Score=48.04 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=88.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+..+.+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+..-
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA----------NPIYLSNRAAAYSASGQ---HEKAAEDAELATVVD 75 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------CHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999887653 46788888999999995 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
. ..+.++..+|.-...+ ...++.+..|+++++++|+...+|+..+..
T Consensus 76 p----------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 76 P----------------------KYSKAWSRLGLARFDM------ADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp T----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred C----------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 1 0134455555555443 246788999999999999999888776655
No 169
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=93.46 E-value=1.8 Score=45.70 Aligned_cols=135 Identities=17% Similarity=0.229 Sum_probs=90.0
Q ss_pred hHHHHHHHhccCCCCcchhhccHhhHHHHHHHh--CCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCC
Q 000196 576 TVRHSIFSSLYGNRGFDDFLAQADCLSAIFAAL--NDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSS 653 (1874)
Q Consensus 576 ~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l--~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~ 653 (1874)
..|.+++++|..+..+.+.+ |-++.++.... +=.+..+-...++....|..+.--.+.||+.+++...++.+-...
T Consensus 23 ~~r~~aL~sL~~D~gL~~Ll--Pyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~ 100 (196)
T 4atg_A 23 DMKDIAIECLEKESGLQQLV--PYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKS 100 (196)
T ss_dssp TTHHHHHHHHHHCSSCTTTH--HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCChhhhH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcc
Confidence 56999999997544333222 23333333221 222456666677888888876656678999999998888764321
Q ss_pred -CChHhHHHHHHHHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHH
Q 000196 654 -ADNKCREESAKLLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDL 715 (1874)
Q Consensus 654 -~~~~~r~~a~~~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~L 715 (1874)
+....|+.|+.+++.+++..+......-+.|+..+.+.+.|+. ......-+++.++..+
T Consensus 101 l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~---~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 101 IVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN---RSEDSQYGALYCLSIL 160 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT---SCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC---CChHHHHHHHHHHHHh
Confidence 2226899999999999998776655556788999999998763 2444455666665544
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.27 E-value=1.1 Score=45.07 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=84.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+..+.+.|+++.|...+.++...++... ..+.+.+..+..+...|+ ..+|+..++..+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-------DQAVLHRNRAACHLKLED---YDKAETEASKAIEKD 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-------HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-------HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhC
Confidence 4589999999999999999999999999987755210 014667777888888885 688999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
... ..-...++.++...|+ .++....|+++++++|+...+|..++..
T Consensus 96 ~~~---------------~~~~~~~a~~~~~~~~-------------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 96 GGD---------------VKALYRRSQALEKLGR-------------LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp SCC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ccC---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 100 0011224444544444 4678899999999999999998877765
No 171
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=93.22 E-value=29 Score=45.60 Aligned_cols=335 Identities=10% Similarity=0.106 Sum_probs=175.7
Q ss_pred HHHHHHHHHhhhcC-CChhhhhhHHHHHhHhhccc-cCcchhHHHHHHHHHHhhcccCCChH--------HHHHHHHHHH
Q 000196 67 MDQLYDRISGLLES-NDAAENLGALRAIDELIDVA-LGENASKVSKFSNYMRTVFEVKRDRE--------ILVLASKVLG 136 (1874)
Q Consensus 67 ~~~l~~~i~~l~~s-~~~~~r~~~i~ai~~li~~~-~~~~~~~~~~~~~~L~~~l~~~~d~~--------v~~~aa~~lg 136 (1874)
++.|..++...+++ .+...=.+....|...+... .+.....+.++.+.+...+.|++.-. +...+..-..
T Consensus 230 ~~~iFt~~lr~l~~~~~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~~L~~~f~k 309 (799)
T 1vsy_4 230 MTFMFNRLQGHLRTDGQIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVHAFIKSYHG 309 (799)
T ss_dssp HHHHHHHHHHHHHTTCCCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcCCccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 66677766666653 11211122333333334332 12235567888888888887765432 2223333334
Q ss_pred HHhhh--------CC--Ccc----hHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC---ccchhchHHHHHHH
Q 000196 137 HLARA--------GG--AMT----ADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS---TVFNVHVAEFVDAI 199 (1874)
Q Consensus 137 ~l~~~--------~g--~~~----~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p---~~~~~~l~~il~~i 199 (1874)
|+-.- +. .++ ..||+-..+-++-.+.+ ++.....-+..+++.||.-.| +.+ +|.+++.+
T Consensus 310 R~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fS-K~~~~~~~~~~~l~~La~l~P~~~~lV---lP~vL~r~ 385 (799)
T 1vsy_4 310 RVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQN-KNPDIANYYISCFAYLLELDPSNAYLI---YDKILIDL 385 (799)
T ss_dssp HHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTCCTTHHHH---HHHHHHHH
T ss_pred HHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHHhcCCCcccee---hHHHHHHH
Confidence 44321 10 112 34566666666655554 344445667888999999778 654 45666666
Q ss_pred HHhhcC---CchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcch----
Q 000196 200 WVALRD---PTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTG---- 272 (1874)
Q Consensus 200 ~~~l~D---~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~---- 272 (1874)
..+|.. ..+.--.+|..++..+...+.... ..+ .++..++..++.|++.++ ..---.++..+..+...-+
T Consensus 386 y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~-~yr-~hl~~lL~l~LpgID~ND-~~KT~~tl~fi~~i~s~ipi~d~ 462 (799)
T 1vsy_4 386 YDTLADQFINSRHRIISSLKQFTRVIRFIVMDK-LYR-VHITNVLSMLVSKLDMND-TNLTSNLINGIVSIAAFIPIQDL 462 (799)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTST-TGG-GHHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHHTSCBCCC
T ss_pred HHHhccccccchhHHHHHHHHHHHHHHHHhcCc-ccH-HHHHHHHHHHhccCCccc-HHHHHHHHHHHHHHHHhcccccc
Confidence 677655 344444567888887777666332 233 366788888999998774 4434455555555543100
Q ss_pred ----hh--------------------------------------------hHHHHHHHHHHHHHHhhcc-hhHHHHHHHH
Q 000196 273 ----EF--------------------------------------------MMSRYREVAEIVLRYLEHR-DRLVRLSITS 303 (1874)
Q Consensus 273 ----~~--------------------------------------------~~~~~~~i~~~ll~~~~~~-~~~vr~~~~~ 303 (1874)
+. +..-....++.++.+++++ +..+-..+..
T Consensus 463 s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~ 542 (799)
T 1vsy_4 463 TGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQ 542 (799)
T ss_dssp CCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHH
T ss_pred CCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 11 1112222344555555532 2222233333
Q ss_pred HhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcch---HHHHHHHHHhhchhhhhhhhHHHHHHHHHhhcCC-----C
Q 000196 304 LLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDS---GFIALGEMAGALDGELFHYLPTITSHLREAIAPR-----R 375 (1874)
Q Consensus 304 ~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~---a~~alg~la~~v~~~~~p~l~~i~~~l~~~L~~~-----~ 375 (1874)
++..+.....++..+..++.++.++.+-......+.. +..-++.++.+-++.+..++|.++..|+..+.++ .
T Consensus 543 ~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~~a~~~~~P~~~~~~~p~l~~~i~~~i~~ga~s~rs 622 (799)
T 1vsy_4 543 TTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPLAALVRRNNGLSKELVRTLLFHIKEQIKRGAGSVRS 622 (799)
T ss_dssp HHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTTTCSCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4444433333333344555555555443332222222 2222566666655555677788887777655332 1
Q ss_pred C-C--CCc----hhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 000196 376 G-K--PSL----EALACVGNIARAMGPVMEPHVRGLLDIM 408 (1874)
Q Consensus 376 ~-~--~~~----~a~~~l~~l~~~~g~~~~p~l~~ll~~l 408 (1874)
. + +.. --+.+++.+....|+.+.+|.+++++.+
T Consensus 623 ~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il 662 (799)
T 1vsy_4 623 TSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFM 662 (799)
T ss_dssp SSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHH
T ss_pred ccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHH
Confidence 1 1 111 2356777777777787888877766543
No 172
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.16 E-value=4.3 Score=48.20 Aligned_cols=184 Identities=11% Similarity=0.063 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~ 162 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELKPD----------NQTALMALAVSFTNESL---QRQACEILRDWLRYT 162 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 35778899999999999999999999998877652 36777888899999995 689999999877532
Q ss_pred cCCCcccccc-ccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc--chHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAA-STSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK--WGKAWHSWALFNT 1723 (1874)
Q Consensus 1647 ~~~~~~~~~~-~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~--~~k~w~~wA~~n~ 1723 (1874)
.......... ...............+.++ ..|+| ++.+..|.++++.+|+ ...+|...|....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLF-------------LEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp TTTGGGCC---------------CTTHHHH-HHHHH-------------HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccH-------------HHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 2110000000 0000000000001223333 44443 5566777777777777 6677777776644
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.. .-...|+..|-+++... .........+-.+.+..|+..+....+++.+..-|
T Consensus 229 ~~--------------g~~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 282 (368)
T 1fch_A 229 LS--------------GEYDKAVDCFTAALSVR------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282 (368)
T ss_dssp HT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred Hc--------------CCHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 31 12235666676666653 12233445556666677776666666665554333
No 173
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=92.92 E-value=1.6 Score=46.15 Aligned_cols=101 Identities=10% Similarity=0.156 Sum_probs=76.8
Q ss_pred ChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCc--chhhHHHHHHHHHHHHhhccccccccccchHHHHHH
Q 000196 701 NNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGA--AVTKREVAVSTLGQVVQSTGYVITPYNEYPQLLGLL 778 (1874)
Q Consensus 701 ~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~--~~~~r~~A~~~Lg~l~~~~~~~i~p~~~~p~ll~~L 778 (1874)
+.......+..+..|..+-.-.+.||+.+++|.++.++-... ....|+-|...|+.++...+... | .-.|.++..+
T Consensus 59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~-~L~~RI~~tl 136 (196)
T 4atg_A 59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY-K-TLAPRVLKTL 136 (196)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS-T-THHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC-c-hHHHHHHHHH
Confidence 444556666677777776666899999999999999985321 22699999999999999988642 2 2348889999
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHhcc
Q 000196 779 LKMLNGE-LVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 779 l~~l~~~-~~~~vr~~al~~lg~lga 803 (1874)
.+.+.++ .+...+.-|+..+..+|.
T Consensus 137 ~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 137 KGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 8888544 477888889888888873
No 174
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.89 E-value=1.8 Score=42.31 Aligned_cols=114 Identities=11% Similarity=0.002 Sum_probs=85.8
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+..+.+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+....
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----------DARGYSNRAAALAKLMS---FPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCC
Confidence 3678999999999999999999999999887653 36778888889999995 6899999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc------ccchHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA------TKWGKAWHSWALF 1721 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~------~~~~k~w~~wA~~ 1721 (1874)
. ..+++..+|.-...+ ...++.+..|+++.+++ |+...+|..++..
T Consensus 70 ~----------------------~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 N----------------------FVRAYIRKATAQIAV------KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred C----------------------cHHHHHHHHHHHHHH------hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 0 133444555544443 24578899999999999 8888888777755
Q ss_pred H
Q 000196 1722 N 1722 (1874)
Q Consensus 1722 n 1722 (1874)
.
T Consensus 122 ~ 122 (126)
T 3upv_A 122 S 122 (126)
T ss_dssp H
T ss_pred H
Confidence 4
No 175
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=92.84 E-value=1.1 Score=44.28 Aligned_cols=108 Identities=10% Similarity=0.034 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|-.....+.+.|+++.|.....++..++|. .+.+..-.+.+++..|+ ..+|+..++..+.-...
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----------~~~~~~nlg~~~~~~~~---~~~A~~~~~~al~~~~~ 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----------NITFYNNKAAVYFEEKK---FAECVQFCEKAVEVGRE 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHhHHHHHHHhhh---HHHHHHHHHHHHHhCcc
Confidence 566778889999999999999999999888763 35667778888889995 68999999887643211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK 1710 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~ 1710 (1874)
........+++|..+|.....+ ...++.++.|++|++.+|+
T Consensus 75 ---------------~~~~~~~~a~~~~~lg~~~~~~------~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 ---------------TRADYKLIAKAMSRAGNAFQKQ------NDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------------TTCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSCC
T ss_pred ---------------cchhhHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCcC
Confidence 1123456899999999988775 4689999999999988775
No 176
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=92.63 E-value=7.5 Score=44.92 Aligned_cols=178 Identities=12% Similarity=-0.005 Sum_probs=118.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+.+....+..++..|+ ..+|+..++..+...
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~ 119 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK----------DIAVHAALAVSHTNEHN---ANAALASLRAWLLSQ 119 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 35788999999999999999999999998877542 36777888899999995 689999998876532
Q ss_pred cCCCccccccccccccccCcchhhH------HHHHHHH-hhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLI------ARVYLKL-GSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~------a~~~~~~-g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
..... ..... +.....+ |.|.. ......++....|.++.+.+|+...+|...|
T Consensus 120 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 120 PQYEQ---------------LGSVNLQADVDIDDLNVQSEDFFF-----AAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp TTTTT---------------C--------------------CCT-----TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CccHH---------------HHHHHhHHHHHHHHHHHHHHhHHH-----HHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 11100 00000 0000011 21100 0123457788999999999999999999888
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
..+... .-...|++.|-+++... .........+-.+++..|..++....+++.+..-|
T Consensus 180 ~~~~~~--------------~~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 180 VLYNLS--------------NNYDSAAANLRRAVELR------PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHT--------------TCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHh--------------ccHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 775531 12346788888888764 22345566777788888888877777777665444
No 177
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.63 E-value=0.97 Score=49.22 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHH----------------HHHHHHhcCCcch
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA----------------YLKYQWSLGEDLK 1631 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e----------------~~k~lw~~g~~~~ 1631 (1874)
..+.++.-+....+.|+++.|...+.++...+|. .+.+.+. .+..+...|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--- 69 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID----------RTEMYYWTNVDKNSEISSKLATELALAYKKNRN--- 69 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH----------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC---
Confidence 3567888889999999999999999998876552 2344444 7888888885
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc
Q 000196 1632 RKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW 1711 (1874)
Q Consensus 1632 ~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~ 1711 (1874)
..+|+..+++.+..-... ..--..++.+|...|+ .++.+..|+++++++|+.
T Consensus 70 ~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNN---------------VDCLEACAEMQVCRGQ-------------EKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHcCCCC
Confidence 689999999877532100 0011224455544444 477889999999999999
Q ss_pred hHHHHHHHHHHHH
Q 000196 1712 GKAWHSWALFNTA 1724 (1874)
Q Consensus 1712 ~k~w~~wA~~n~~ 1724 (1874)
..+|+.+|.+.+.
T Consensus 122 ~~a~~~lg~~~~~ 134 (208)
T 3urz_A 122 LAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 178
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=92.54 E-value=11 Score=43.41 Aligned_cols=158 Identities=13% Similarity=0.041 Sum_probs=97.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch------h-----
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE------L----- 1355 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~------~----- 1355 (1874)
..|....+.+.|..|+.+++......+ .++ ....-.+..+|...|+++.+...+..+... .
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGT-----EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCc-----ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 457788889999999999988765321 122 245568899999999999998877643211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhC--------------------HHHHHH
Q 000196 1356 DVQLKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALAR--------------------WEELNN 1412 (1874)
Q Consensus 1356 ~~~~~~~~~E~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~--------------------w~~l~~ 1412 (1874)
.....+..|...|+|++|+..|++.+... .++.........+-.++..+|+ ++.-..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 01123345788999999999999976532 1211112234566677788888 765554
Q ss_pred HHhhhcC----CCChHHHHhHHHHHHHHHHHcCChhhHHHHHhh
Q 000196 1413 LCKEYWT----PAEPAARLEMAPMAANAAWNMGEWDQMAEYVSR 1452 (1874)
Q Consensus 1413 ~~~~~~~----~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~ 1452 (1874)
..+.... ..+...........+...+..|+|+.-.++...
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 208 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4432110 001122222333456677888888887666553
No 179
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=92.50 E-value=0.4 Score=47.55 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=68.2
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc-hhh-----------
Q 000196 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK-ELD----------- 1356 (1874)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~~----------- 1356 (1874)
..||....+.+.|.+|+.+.+..+.- ++......-.+..+|..+|+.+.+.-.+..+-. ..+
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIEL------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 46899999999999999998877653 234456777889999999999988876654321 000
Q ss_pred hhhcHHHHHHhcCHHHHHHHHHHHHhccCCC
Q 000196 1357 VQLKESWYEKLQRWDDALKAYTNKASQASNP 1387 (1874)
Q Consensus 1357 ~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~ 1387 (1874)
....+..++++|+|++|+++|++.+...+++
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 1123445889999999999999988765554
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.42 E-value=2.5 Score=40.91 Aligned_cols=121 Identities=11% Similarity=0.020 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT----------NMTYITNQAAVYFEKGD---YNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhcc
Confidence 3578999999999999999999999998876542 36777888888888885 6889999988765422
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.. .......+.++..+|...... ...++....|+++.+..| ....+...+....
T Consensus 70 ~~---------------~~~~~~~~~~~~~la~~~~~~------~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 70 EN---------------REDYRQIAKAYARIGNSYFKE------EKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HS---------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred cc---------------chhHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 10 112234467777778777654 357889999999999988 4677776665543
No 181
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.41 E-value=1.5 Score=54.78 Aligned_cols=142 Identities=14% Similarity=0.141 Sum_probs=100.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc---------CCcchHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL---------GEDLKRKEAFA 1637 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~---------g~~~~~~~Al~ 1637 (1874)
++...|..++.+..+.|+++.|...+.++...+|. +......+.+++.. | +..+|+.
T Consensus 135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----------~~~~~~lg~~~~~~~~~~~~~~~g---~~~~A~~ 200 (474)
T 4abn_A 135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-----------KVSLQNLSMVLRQLQTDSGDEHSR---HVMDSVR 200 (474)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-----------HHHHHHHHHHHTTCCCSCHHHHHH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------HHHHHHHHHHHHHhccCChhhhhh---hHHHHHH
Confidence 45789999999999999999999999999887642 45667777777777 6 4678999
Q ss_pred HHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc---cchHH
Q 000196 1638 RLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT---KWGKA 1714 (1874)
Q Consensus 1638 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~---~~~k~ 1714 (1874)
.+++.+...... ..--..++.+|..+ +.. . +.+....++.+..|++|++++| +...+
T Consensus 201 ~~~~al~~~p~~---------------~~~~~~lg~~~~~~--~~~-~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 260 (474)
T 4abn_A 201 QAKLAVQMDVLD---------------GRSWYILGNAYLSL--YFN-T--GQNPKISQQALSAYAQAEKVDRKASSNPDL 260 (474)
T ss_dssp HHHHHHHHCTTC---------------HHHHHHHHHHHHHH--HHH-T--TCCHHHHHHHHHHHHHHHHHCGGGGGCHHH
T ss_pred HHHHHHHhCCCC---------------HHHHHHHHHHHHHH--HHh-h--ccccchHHHHHHHHHHHHHhCCCcccCHHH
Confidence 988876531100 01112355555555 000 0 0001235788999999999999 99999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1715 WHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1715 w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
|+.+|..+... .-...|+..|-+++.+.
T Consensus 261 ~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 261 HLNRATLHKYE--------------ESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC
Confidence 99999886641 12347899999999885
No 182
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.08 E-value=0.3 Score=50.11 Aligned_cols=108 Identities=11% Similarity=0.005 Sum_probs=76.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccc
Q 000196 1576 ASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSA 1655 (1874)
Q Consensus 1576 a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~ 1655 (1874)
..+.|+.|.++.|...+.++...+|. .+...+..+++.+..|+ ..+|+..+++.+.--.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~----------~~~~~~~la~~y~~~~~---~~~A~~~~~~al~~~p-------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQ----------KSIKGFYFAKLYYEAKE---YDLAKKYICTYINVQE-------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHH----------HHTTHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcc----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--------
Confidence 45567778888888888877654321 24556778899999995 6899999998775311
Q ss_pred cccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000196 1656 ASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1656 ~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
-.+.++..+|.-.... ...++.+..|++|++++|+...+|+.+|....+
T Consensus 63 --------------~~~~a~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 63 --------------RDPKAHRFLGLLYELE------ENTDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp --------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHc------CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 0133455555555443 246788999999999999999999999987654
No 183
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=91.85 E-value=2.7 Score=47.45 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=103.9
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccc
Q 000196 1580 RKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTS 1659 (1874)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~ 1659 (1874)
..+|+++.|...+.++....+...+ ..+.+.+..+......|+ ..+|+..+++.+.....
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~----------- 75 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDD------ERAQLLYERGVLYDSLGL---RALARNDFSQALAIRPD----------- 75 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHH------HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCC-----------
T ss_pred CccchHHHHHHHHHHHHhcccccCc------hhHHHHHHHHHHHHHccc---HHHHHHHHHHHHHcCCC-----------
Confidence 4457788888888887765321111 135677788888888885 68899999887653110
Q ss_pred cccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchh
Q 000196 1660 LTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAP 1739 (1874)
Q Consensus 1660 ~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~ 1739 (1874)
.+.++..+|...... ...++.+..|+++++.+|+...+|+.+|...... +
T Consensus 76 -----------~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-------g------ 125 (275)
T 1xnf_A 76 -----------MPEVFNYLGIYLTQA------GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-------G------ 125 (275)
T ss_dssp -----------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-------T------
T ss_pred -----------cHHHHHHHHHHHHHc------cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh-------c------
Confidence 123344455544433 2467889999999999999999999998776541 1
Q ss_pred hHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChhhHH
Q 000196 1740 QFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNINTWL 1802 (1874)
Q Consensus 1740 ~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~~wl 1802 (1874)
-...|+..|-+++...+ .+. .....+.+.+..|+..+....+.+.+...|...|.
T Consensus 126 -~~~~A~~~~~~a~~~~~-----~~~--~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (275)
T 1xnf_A 126 -RDKLAQDDLLAFYQDDP-----NDP--FRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 180 (275)
T ss_dssp -CHHHHHHHHHHHHHHCT-----TCH--HHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred -cHHHHHHHHHHHHHhCC-----CCh--HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH
Confidence 23467777777777642 222 22223334455566666666666666555555444
No 184
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=91.80 E-value=0.88 Score=44.30 Aligned_cols=108 Identities=13% Similarity=-0.024 Sum_probs=55.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++......+.|..|+.+++...... +........+..+|..+|+.+.+...+...... .. ....+..+
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555566666777776666554321 222345556666666666666666555532211 00 11122345
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
.+.|+|++|...|++.+...++. ......+-.|+..+|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDN---ETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHhc
Confidence 66666666666666665543322 2233444555555554
No 185
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.70 E-value=11 Score=42.98 Aligned_cols=127 Identities=14% Similarity=0.160 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhhcCChHHHhHHHHHHhch--------hh-----hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCC
Q 000196 1326 AVVEALIHINNQLHQHEAAVGILTYAQKE--------LD-----VQLKESWYEKLQRWDDALKAYTNKASQA-----SNP 1387 (1874)
Q Consensus 1326 ~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~--------~~-----~~~~~~~~E~lg~W~~Al~~y~~~~~~~-----~~~ 1387 (1874)
.....|..+|...|+.+.+.-.++.+... .. ....+..|...|+|++|+..|++.+... .++
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44556677777777777777666543220 00 1122334778899999999998877531 222
Q ss_pred chhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCC------CChHHHHhHHHHHHHHHHHcCChhhHHHHHhh
Q 000196 1388 HIVLEATLGRMRCLAALARWEELNNLCKEYWTP------AEPAARLEMAPMAANAAWNMGEWDQMAEYVSR 1452 (1874)
Q Consensus 1388 ~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~------~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~ 1452 (1874)
.........+-.|+..+|+|+.-....+..... .+...........+.+.+..|+|+.-.++...
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222445567778888899987666555432110 01111222333456677888888877665553
No 186
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=91.69 E-value=29 Score=45.53 Aligned_cols=262 Identities=9% Similarity=0.053 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcC--CCcchhHHHHHHHHHHHH
Q 000196 107 KVSKFSNYMRTVFEV---KRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG--DRVEYRRFAAVLILKEMA 181 (1874)
Q Consensus 107 ~~~~~~~~L~~~l~~---~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~--~~~~~~r~aA~~~l~~la 181 (1874)
...+|..-+..++-. +.+..++..+..++..|+........-.++..++++-+-|.+ -....+-.+|+..+..++
T Consensus 332 ~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~ 411 (799)
T 1vsy_4 332 CHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVI 411 (799)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 345565544322211 468999999999999999852211245777888888887764 333344466777777666
Q ss_pred hhc--CccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcc------------------------------
Q 000196 182 ENA--STVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRE------------------------------ 229 (1874)
Q Consensus 182 ~~~--p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~------------------------------ 229 (1874)
.-. ...+.+|+..++...+.++-=.++.---.+...+..++..+.-.+
T Consensus 412 r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 491 (799)
T 1vsy_4 412 RFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGES 491 (799)
T ss_dssp HHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccc
Confidence 542 235678999999999998854444333345555554444222110
Q ss_pred ------------------hhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHhh
Q 000196 230 ------------------TRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYLE 291 (1874)
Q Consensus 230 ------------------~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~~ 291 (1874)
...-.+|...+++.+..-+.+..+.....+--.++..++...++ +-++.++..+..+..
T Consensus 492 ~~~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~ 568 (799)
T 1vsy_4 492 SKTFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFW 568 (799)
T ss_dssp SSSCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Confidence 01133566666666665554322222222222234444443332 233444445555443
Q ss_pred cc-hhHHHHHHHHH----hHhHhhhChhhHHHHHHHHHHHHHHHhhcCC--------C--Ccc----hHHHHHHHHHhhc
Q 000196 292 HR-DRLVRLSITSL----LPRIAHFLRDRFVTNYLKICMNHILTVLRIP--------A--ERD----SGFIALGEMAGAL 352 (1874)
Q Consensus 292 ~~-~~~vr~~~~~~----i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~--------~--~R~----~a~~alg~la~~v 352 (1874)
+. .+...+++..+ +..++..+|+ ..+.+++.+...+...+.+. + .|. --+..|+.+....
T Consensus 569 ~n~~~~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~ 647 (799)
T 1vsy_4 569 SNDSFKEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNC 647 (799)
T ss_dssp SCSCCCSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcC
Confidence 32 12222333333 4566667777 44556666666665444332 0 122 3566777777888
Q ss_pred hhhhhhhhHHHHHHHHHhhc
Q 000196 353 DGELFHYLPTITSHLREAIA 372 (1874)
Q Consensus 353 ~~~~~p~l~~i~~~l~~~L~ 372 (1874)
|..+.+|-+++++.+.-.+.
T Consensus 648 g~~lL~y~deL~~il~~~~~ 667 (799)
T 1vsy_4 648 HESLLEYSDELITFMKYLYD 667 (799)
T ss_dssp GGGGGTTHHHHHHHHHHHHH
T ss_pred cHHHHccHHHHHHHHHHHHH
Confidence 88888999999998887664
No 187
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.47 E-value=4.5 Score=39.78 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=85.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+..+.+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALELD 73 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhC
Confidence 45789999999999999999999999998887653 36777888888888885 688999988876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhccc-----chHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATK-----WGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~-----~~k~w~~wA~~ 1721 (1874)
.. .++++..+|.-...+ ...++.+..|+++++++|+ ....|...+..
T Consensus 74 p~----------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 74 GQ----------------------SVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred ch----------------------hHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 10 123444555544443 2457888999999999988 66666666655
Q ss_pred HHH
Q 000196 1722 NTA 1724 (1874)
Q Consensus 1722 n~~ 1724 (1874)
...
T Consensus 126 ~~~ 128 (137)
T 3q49_B 126 KKK 128 (137)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 188
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=91.35 E-value=23 Score=42.21 Aligned_cols=178 Identities=8% Similarity=-0.004 Sum_probs=117.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 000196 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQS 1654 (1874)
Q Consensus 1575 ~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~ 1654 (1874)
.+......|+++.|...+.++........+. .....+.+..+.+.+..|+ ..+|+..+++.+.-....
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~~~----- 176 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDR----IEKAEFFFKMSESYYYMKQ---TYFSMDYARQAYEIYKEH----- 176 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCH----HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhC-----
Confidence 7888999999999999999987652211100 0123556667777888885 688999998876544321
Q ss_pred ccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch------HHHHHHHHHHHHHHHh
Q 000196 1655 AASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG------KAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1655 ~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~------k~w~~wA~~n~~~~~~ 1728 (1874)
.......+.++..+|.-...+ ...++.+..|.+|.++.++.. .+|+..|..+..
T Consensus 177 ----------~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~---- 236 (383)
T 3ulq_A 177 ----------EAYNIRLLQCHSLFATNFLDL------KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS---- 236 (383)
T ss_dssp ----------STTHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred ----------ccchHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH----
Confidence 112445678888888877665 357899999999998876543 355555555432
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhccc
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~ 1794 (1874)
.+ -...|++.|-+++.+................+-.+++..|+.++....+++.+.
T Consensus 237 ---~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 237 ---QS-------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp ---TT-------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CC-------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11 234678888888876321111134455567777888888988877776666653
No 189
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=91.30 E-value=2.5 Score=43.06 Aligned_cols=114 Identities=10% Similarity=-0.063 Sum_probs=81.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
+....|+.++++..+.|+++.|...+.++...+|. .+.+.+..+.+....|+ ..+|+..++..+.--
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~~~---~~~A~~~~~~al~~~ 95 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER----------DPKAHRFLGLLYELEEN---TDKAVECYRRSVELN 95 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCc---hHHHHHHHHHHHHhC
Confidence 45677899999999999999999999999988763 46788888899999995 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHH-HHHHHHhhcccchHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIA-AYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~-~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
... ..--..+|.+|...|++ ++..+ .+++|++++|+...+|.-.+..
T Consensus 96 p~~---------------~~~~~~la~~~~~~~~~-------------~~aa~~~~~~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 96 PTQ---------------KDLVLKIAELLCKNDVT-------------DGRAKYWVERAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp TTC---------------HHHHHHHHHHHHHHCSS-------------SSHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCC---------------HHHHHHHHHHHHHcCCh-------------HHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 100 00112244455444443 23344 4588999999999988766644
No 190
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=91.30 E-value=5.3 Score=48.33 Aligned_cols=195 Identities=11% Similarity=-0.026 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....++..+....+.|+++.|...+.++....+.. +. ....+.+..+...+..|+ ..+|+..+++.+....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~-----~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~ 117 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED-LR-----TLSAIYSQLGNAYFYLGD---YNKAMQYHKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSC-HH-----HHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccC-hh-----HHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 36678899999999999999999999988765421 00 001456777888888895 6889999888765432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh------cccchHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC------ATKWGKAWHSWALF 1721 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~------~~~~~k~w~~wA~~ 1721 (1874)
. ..+....+.++..+|...... ...++.+..|.++.++ .+....+|..+|..
T Consensus 118 ~----------------~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 118 S----------------MNDRLGEAKSSGNLGNTLKVM------GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV 175 (411)
T ss_dssp H----------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H----------------ccCchHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 1 123455677888888877665 3578899999999888 44556677777777
Q ss_pred HHHHHHhhh---ccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000196 1722 NTAVMSHYT---LRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1722 n~~~~~~~~---~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
+...-+... ..............|++.|-+++.+................+-.+++..|+.++....+++.+
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 655432000 000011122345667777777666532111111112233444455666676666555555443
No 191
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=91.25 E-value=1.2 Score=50.27 Aligned_cols=124 Identities=14% Similarity=0.000 Sum_probs=83.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh-------hhhcH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD-------VQLKE 1361 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~-------~~~~~ 1361 (1874)
.+|....+-+.|..|+-+++......+. ++......-.|..+|.++|+++.+...++..-.. .+ .-..+
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYGRT---HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGCSC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCC---CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 4577778889999999999887654321 1112456678899999999999999888754321 10 11223
Q ss_pred HHHHH--------hcCHHHHHHHHHHHHhccCCCchhHHhH--------------hhHhHHHHHhhCHHHHHHHHhh
Q 000196 1362 SWYEK--------LQRWDDALKAYTNKASQASNPHIVLEAT--------------LGRMRCLAALARWEELNNLCKE 1416 (1874)
Q Consensus 1362 ~~~E~--------lg~W~~Al~~y~~~~~~~~~~~~~~~~~--------------~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1874)
..|.+ .|+|++|+..|++.+...++........ ..+-+|+..+|+|+.-....+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44677 9999999999999887665542212222 4556788888888766555543
No 192
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.12 E-value=1.2 Score=51.61 Aligned_cols=161 Identities=11% Similarity=0.076 Sum_probs=98.4
Q ss_pred HHHHHHHhccchhhhhhhccchhccccccc--CCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh--------h---
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNR--MDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL--------D--- 1356 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~--~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~--------~--- 1356 (1874)
.++......+.|.+|+.+++.......... ..+........|..+|..+|+.+.+...++.+.... .
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 456666677778888877776553211000 011223456788999999999999988776433210 0
Q ss_pred --hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhc-------CCCC
Q 000196 1357 --VQLKESWYEKLQRWDDALKAYTNKASQA-----SNPHIVLEATLGRMRCLAALARWEELNNLCKEYW-------TPAE 1422 (1874)
Q Consensus 1357 --~~~~~~~~E~lg~W~~Al~~y~~~~~~~-----~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~-------~~~~ 1422 (1874)
.......|...|+|++|+.+|++.+... .++.........+-.|+..+|+|+.-....+... ....
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 1123345889999999999999987542 2222224455677889999999976665554321 1112
Q ss_pred hHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000196 1423 PAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1423 ~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
+ .........+.+...+|+|+.-.++..
T Consensus 192 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 192 P-NVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp H-HHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 222333345677788888887766544
No 193
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.08 E-value=1.3 Score=47.97 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=87.5
Q ss_pred hhHHHHHhhhccCCChHHHHHHHHHhHHhhhccCCCCcccccccccccccccchhHHHHHHHHHHHHHHhcCCChhHHHH
Q 000196 501 EFARDSVVLYLDDEDKATRKDAALCCCKLVANSFSGVSFTQFGASRSNRTGGKRRRLIEELVEKLLIAAVADADVTVRHS 580 (1874)
Q Consensus 501 ~~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~Ll~~~~~d~~~~vR~~ 580 (1874)
+....++..+..++...||..|+..++++ . . ..++++.+-.....|+.+.||..
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--~-----------------------~~~~L~~ir~~va~D~~WrVre~ 123 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--K-----------------------DKEILIFMRDEVSKDNNWRVQEV 123 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--T-----------------------SHHHHHHHHHTGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--C-----------------------cHHHHHHHHHHhCCCCCccHHHH
Confidence 34445666777788889998888766655 2 1 12233333332467888888888
Q ss_pred HHHhccCCCCcchhh--ccHh-hHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChH
Q 000196 581 IFSSLYGNRGFDDFL--AQAD-CLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNK 657 (1874)
Q Consensus 581 ~l~~l~~~~~f~~~L--~~~~-~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~ 657 (1874)
+-.++. +++ ..++ .++.+..-+.|+++.||+.|+..+--.+.. |.. ..-...+..++..+..+ ++.-
T Consensus 124 lA~a~~------~~~~~~~pe~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~--k~dp~~ll~iL~~L~~D-~s~y 193 (240)
T 3l9t_A 124 LAKAFD------EFCKKIEYKKALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYF--KENPNEAIRRIADLKED-VSEY 193 (240)
T ss_dssp HHHHHH------HHHHHHCTTTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTT--TTCHHHHHHHHHTTTTC-SCHH
T ss_pred HHHHHH------HHHHhcCHHHHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chh--hcCHHHHHHHHHHhcCC-hHHH
Confidence 777664 222 1222 466677778889999999888875332222 211 01123345566666666 6666
Q ss_pred hHHHHHHHHHHHHHhCccccccc
Q 000196 658 CREESAKLLGCLIRNCERLIRPY 680 (1874)
Q Consensus 658 ~r~~a~~~L~~l~~~~~~~~~py 680 (1874)
+|..-++.|-++.+..|+.+..+
T Consensus 194 VrKSVan~LrD~SK~~Pd~V~~~ 216 (240)
T 3l9t_A 194 VRKSVGNALRDISKKFPDLVKIE 216 (240)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCHHHHHHH
Confidence 77777888888888777654443
No 194
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=91.06 E-value=4.1 Score=41.56 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
....|...+....+.|+++.|...+.++...++. .+.+.+..+......|+ ..+|+..+++.+....
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~a~~~~~ 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTEC---YGYALGDATRAIELDK 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCc
Confidence 3678999999999999999999999998876542 36777788888888885 6889999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
. .+.++..+|...... ...++....|+++++.+|+...+|..++..
T Consensus 79 ~----------------------~~~~~~~~a~~~~~~------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 79 K----------------------YIKGYYRRAASNMAL------GKFRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp T----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred c----------------------cHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 123445555544443 246788999999999999998888666654
No 195
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=91.05 E-value=1.7 Score=42.36 Aligned_cols=113 Identities=15% Similarity=0.067 Sum_probs=57.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-----~~~~~~~~ 1364 (1874)
.++....+.+.|..|+.+++...... +......-.+..+|...|+.+.+...++....... .......+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 45566666777777777776554321 22234445566666666666666665553321100 01122235
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHH
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELN 1411 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~ 1411 (1874)
.+.|+|++|+..|++.+...++. ......+.+++...|+++.-.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHH
Confidence 56666666666666655433221 223344455555555554443
No 196
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=90.77 E-value=1.4 Score=45.08 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=79.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+.--
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~----------~~~~~~~lg~~~~~~g~---~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY----------NVDYIMGLAAIYQIKEQ---FQQAADLYAVAFALG 100 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhC
Confidence 45889999999999999999999999999988763 46777888888888995 689999998876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
... ..---.++.||..+|+ .++.+..|++|++++|+..
T Consensus 101 P~~---------------~~~~~~lg~~~~~lg~-------------~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KND---------------YTPVFHTGQCQLRLKA-------------PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSC---------------CHHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHCCCHH
T ss_pred CCC---------------cHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCHH
Confidence 110 1111235666655555 4778899999999998653
No 197
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=90.68 E-value=7.4 Score=37.46 Aligned_cols=131 Identities=19% Similarity=0.225 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000196 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1874)
Q Consensus 1570 ~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~ 1649 (1874)
..|...+....+.|+++.|...+.++....+. .+......+......|+ ..+|+..+++.+.....
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~~~- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR----------SAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc----------chhHHHHHHHHHHHhcC---HHHHHHHHHHHHHHCCC-
Confidence 46888899999999999999999988765442 35666777888888885 67899988886643110
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhh
Q 000196 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHY 1729 (1874)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~ 1729 (1874)
...++..+|...... ...++..+.|.++.+..|+...+|..+|.....
T Consensus 68 ---------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----- 115 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQ------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK----- 115 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-----
T ss_pred ---------------------chHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----
Confidence 022344445444332 346788999999999999999999888876542
Q ss_pred hccCCCCchhhHHHHHHHHHHHHHhh
Q 000196 1730 TLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1874)
Q Consensus 1730 ~~~~~~~~~~~~~~~ai~~f~~si~~ 1755 (1874)
. .-...|+..|-+++..
T Consensus 116 --~-------~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 116 --Q-------GDYDEAIEYYQKALEL 132 (136)
T ss_dssp --T-------TCHHHHHHHHHHHHHH
T ss_pred --H-------ccHHHHHHHHHHHHcc
Confidence 1 1233567777776654
No 198
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=90.60 E-value=6.6 Score=44.08 Aligned_cols=168 Identities=11% Similarity=-0.038 Sum_probs=108.8
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...|...+....+.|+++.|...+.++...+|. .+.+....+.+++..|+ ..+|+..+++.+...
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----------MPEVFNYLGIYLTQAGN---FDAAYEAFDSVLELD 107 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----------cHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998877653 36777888889999995 689999999877532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. . +.++..+|.-.... ...++.+..|+++++.+|+....+...+ .+...
T Consensus 108 ~~------------------~----~~~~~~la~~~~~~------g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~- 157 (275)
T 1xnf_A 108 PT------------------Y----NYAHLNRGIALYYG------GRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQK- 157 (275)
T ss_dssp TT------------------C----THHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHH-
T ss_pred cc------------------c----cHHHHHHHHHHHHh------ccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHh-
Confidence 10 0 12333444433332 2457889999999999998764333222 22110
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
.-...|+..|-+++...+ .. .....+..+.+..++..+....+.+.+..-|
T Consensus 158 -------------~~~~~A~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 158 -------------LDEKQAKEVLKQHFEKSD-----KE--QWGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp -------------HCHHHHHHHHHHHHHHSC-----CC--STHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred -------------cCHHHHHHHHHHHHhcCC-----cc--hHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 122356666666666532 11 1234456666666666556666666665544
No 199
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=90.56 E-value=2.2 Score=42.89 Aligned_cols=107 Identities=15% Similarity=0.077 Sum_probs=78.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+..-
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY----------DARYFLGLGACRQSLGL---YEQALQSYSYGALMD 82 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998887653 46777888888888885 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKA 1714 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~ 1714 (1874)
... ....-.++.+|..+|+ .++.+..|+++++++|+....
T Consensus 83 p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~~~ 122 (142)
T 2xcb_A 83 INE---------------PRFPFHAAECHLQLGD-------------LDGAESGFYSARALAAAQPAH 122 (142)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHHTCGGG
T ss_pred CCC---------------cHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCcch
Confidence 110 0111234555555444 467889999999998866443
No 200
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=90.50 E-value=1.2 Score=58.65 Aligned_cols=134 Identities=16% Similarity=-0.013 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|+..+.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+...
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 497 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW----------RWRLVWYRAVAELLTGD---YDSATKHFTEVLDTF 497 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHS
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc----------hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Confidence 45788999999999999999999999998877653 46778888888888995 689999999876532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
... ..-...+|.++..+|+|. + +..|++|++++|+...+|+..|......
T Consensus 498 P~~---------------~~~~~~lg~~~~~~g~~~-------------~-~~~~~~al~~~P~~~~a~~~lg~~~~~~- 547 (681)
T 2pzi_A 498 PGE---------------LAPKLALAATAELAGNTD-------------E-HKFYQTVWSTNDGVISAAFGLARARSAE- 547 (681)
T ss_dssp TTC---------------SHHHHHHHHHHHHHTCCC-------------T-TCHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred CCC---------------hHHHHHHHHHHHHcCChH-------------H-HHHHHHHHHhCCchHHHHHHHHHHHHHc-
Confidence 110 111234677777777763 4 5789999999999999999999875541
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
+ -...|+..|-+++.+.
T Consensus 548 ------g-------~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 548 ------G-------DRVGAVRTLDEVPPTS 564 (681)
T ss_dssp ------T-------CHHHHHHHHHTSCTTS
T ss_pred ------C-------CHHHHHHHHHhhcccC
Confidence 1 2247888888887764
No 201
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.43 E-value=2.1 Score=43.85 Aligned_cols=117 Identities=10% Similarity=0.008 Sum_probs=73.9
Q ss_pred HHHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHH
Q 000196 1289 RLLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESW 1363 (1874)
Q Consensus 1289 ~~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~ 1363 (1874)
..+|....+.+.|.+|+.+++...... +......-.+..+|..+|+.+.+...+..+... . . ....+..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 356777788888999998887766432 233566677888888899988888777654321 1 0 1122345
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHH
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNN 1412 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~ 1412 (1874)
+.+.|++++|..+|++.+...++... .....+....+.+.|+++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~-~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKD-AKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999888765443321 1112344444556666654443
No 202
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.31 E-value=5.3 Score=45.67 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=122.0
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH---HH---HHHHHHHHHHhhCCCChHhHHHHHHHHHHHHH
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA---LR---RHLIQLLTYLEQSSADNKCREESAKLLGCLIR 671 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~---l~---~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~ 671 (1874)
.+.+..|...+..=+++.|..+..++..+....+..=.|. +. +++..++...+ .++..-.+..+|-+.++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe----~~diAl~~G~mLRecir 152 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE----SPEIALNCGIMLRECIR 152 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG----STTTHHHHHHHHHHHHT
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc----cchhHhHHHHHHHHHHH
Confidence 3568888888888899999999999999988876543332 21 22222333222 23333333344444443
Q ss_pred hC--ccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc----ccchhhcHHhHHHHHHHHHhcCcchh
Q 000196 672 NC--ERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG----GFGMRQYISELMPLIVEALLDGAAVT 745 (1874)
Q Consensus 672 ~~--~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~----g~~~~~~~~~llp~l~~~l~d~~~~~ 745 (1874)
+- ...+. -.+.+..+...+.. .+-++.+.++.++.++.... .+.+...++.++..+-..|+.. +--
T Consensus 153 ~e~la~~iL--~~~~f~~fF~yv~~-----~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYV 224 (341)
T 1upk_A 153 HEPLAKIIL--WSEQFYDFFRYVEM-----STFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYV 224 (341)
T ss_dssp SHHHHHHHH--HSGGGGHHHHHTTC-----SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHH
T ss_pred hHHHHHHHh--ccHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cch
Confidence 21 00000 00111122233333 36778888899998876533 2456667778888887766544 555
Q ss_pred hHHHHHHHHHHHHhhcc--ccccccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 000196 746 KREVAVSTLGQVVQSTG--YVITPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMGA 803 (1874)
Q Consensus 746 ~r~~A~~~Lg~l~~~~~--~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lga 803 (1874)
.|..+++-||.+...-. .++.-|..-|+-|..++++|++. +..++.+|+.++-...|
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 67789999998886532 23566777789999999999765 89999999999876544
No 203
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=90.27 E-value=4.9 Score=42.93 Aligned_cols=127 Identities=10% Similarity=-0.060 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccccc-CC-----CChHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR-YH-----GPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~-~~-----~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~ 1641 (1874)
....|...+..+.+.|+++.|...+.++....+........ .. ....+.+..+..++..|+ ..+|+..++.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~ 113 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD---YPKAIDHASK 113 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHH
Confidence 36778999999999999999999999988775531100000 00 001566777888888885 6899999888
Q ss_pred HHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
.+.... ..+++++.+|.-...+ ...++.+..|+++++++|+...+|..++..
T Consensus 114 al~~~p----------------------~~~~~~~~lg~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 114 VLKIDK----------------------NNVKALYKLGVANMYF------GFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHST----------------------TCHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHhCc----------------------ccHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 765311 0123344444444433 235778899999999999999999998877
Q ss_pred HHHH
Q 000196 1722 NTAV 1725 (1874)
Q Consensus 1722 n~~~ 1725 (1874)
...+
T Consensus 166 ~~~~ 169 (198)
T 2fbn_A 166 VNKL 169 (198)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 204
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=90.25 E-value=24 Score=40.15 Aligned_cols=202 Identities=10% Similarity=-0.037 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|..-+....+.|+++.|...+.+.....+... . . .....+.+..+.+....|+ ..+|+..+++.+.....
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHP-E-F--QQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCH-H-H--HHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCCh-h-H--HHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhc
Confidence 56777888888999999999999888776543210 0 0 0001222333444455563 67899988876532111
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh---cccch----HHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC---ATKWG----KAWHSWALF 1721 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~---~~~~~----k~w~~wA~~ 1721 (1874)
..+....+.++..+|.-.... ...++.+..|++|.++ .++.. .+|+..|..
T Consensus 148 ----------------~~~~~~~~~~~~~lg~~y~~~------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~ 205 (293)
T 2qfc_A 148 ----------------GIDVYQNLYIENAIANIYAEN------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA 205 (293)
T ss_dssp ----------------SSCTTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ----------------CCchHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHH
Confidence 112233577777788777654 4578999999999854 33321 455555555
Q ss_pred HHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHH-HHHHHhcc---cCC
Q 000196 1722 NTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEV-QIALQKGF---AHV 1796 (1874)
Q Consensus 1722 n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v-~~~~~~~~---~~i 1796 (1874)
+.. .+ -...|+..|-+++.+... .+..+. -.....+=.+++..|+.++. ...+++.+ ...
T Consensus 206 y~~-------~~-------~y~~Al~~~~kal~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 206 LYL-------DS-------RYEESLYQVNKAIEISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHH-------TT-------CHHHHHHHHHHHHHHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHH-------Hh-------hHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHh
Confidence 442 11 224677777777776421 111222 23345555677788887665 44455443 445
Q ss_pred ChhhHHHHHHHHHHhccC
Q 000196 1797 NINTWLVVLPQIIARIHS 1814 (1874)
Q Consensus 1797 p~~~wl~~ipQLiari~~ 1814 (1874)
....+-..+-++|+|+.|
T Consensus 271 ~~~~~~~~~~~~~~~~~~ 288 (293)
T 2qfc_A 271 EMHAYKEALVNKISRLEH 288 (293)
T ss_dssp TCHHHHHHHHHHHHHC--
T ss_pred CcHhhHHHHHHHHHHHhh
Confidence 556667777788888744
No 205
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.23 E-value=1.6 Score=42.70 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=62.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1874)
.++....+.+.|..|+.+++...... +........+..+|..+|+.+.+...++.+... . . ....+..|
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRN------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTC------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 45666677778888888777665422 233456667777888888888777766643221 0 0 11223346
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA 1405 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg 1405 (1874)
.+.|+|++|..+|++.+...++. .+....+-+|+..+|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSC---KEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGG---THHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhc
Confidence 77788888888887776543221 233344444544443
No 206
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=90.18 E-value=6 Score=38.31 Aligned_cols=114 Identities=17% Similarity=0.090 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCC
Q 000196 1571 TWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCP 1650 (1874)
Q Consensus 1571 ~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~ 1650 (1874)
.+...+....+.|+++.|...+.++....|... ..+.+.+..+...+..|+ ..+|+..++..+.....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~~~~lg~~~~~~~~---~~~A~~~~~~~~~~~p~-- 71 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGV-------YTPNALYWLGESYYATRN---FQLAEAQFRDLVSRYPT-- 71 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-------ccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHCCC--
Confidence 466788889999999999999999887655310 113677888888889995 68999999987764211
Q ss_pred ccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1651 VIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1651 ~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
......+++.+|...... ...++....|+++++.+|+...++...+
T Consensus 72 -----------------~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 72 -----------------HDKAAGGLLKLGLSQYGE------GKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp -----------------STTHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred -----------------CcccHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 112345566666665544 3468889999999999998876655444
No 207
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=90.09 E-value=3.3 Score=42.01 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+.-.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY----------DSRFFLGLGACRQAMGQ---YDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc----------cHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999998887653 46777788888888885 689999998876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG 1712 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~ 1712 (1874)
... ....-.++.+|..+|+ .++....|.++++++|+..
T Consensus 86 p~~---------------~~~~~~lg~~~~~~g~-------------~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 86 IXE---------------PRFPFHAAECLLQXGE-------------LAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TTC---------------THHHHHHHHHHHHTTC-------------HHHHHHHHHHHHHHHTTCG
T ss_pred CCC---------------chHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHHCcCCC
Confidence 100 0111224444444444 5778899999999988654
No 208
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=90.06 E-value=3.5 Score=47.45 Aligned_cols=167 Identities=11% Similarity=-0.011 Sum_probs=113.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+.+.++..+..+...|+++.|...+.+++..+|. .+...+..+..+...|+ ..+|+..++.....-
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~la~~~~~~g~---~~~A~~~l~~~~~~~ 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ----------NGEIGLLLAETLIALNR---SEDAEAVLXTIPLQD 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS----------CHHHHHHHHHHHHHTTC---HHHHHHHHTTSCGGG
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc----------chhHHHHHHHHHHHCCC---HHHHHHHHHhCchhh
Confidence 45688999999999999999999999999887763 47888899999999995 688998887643210
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
. +. .. ..+..+.-+.... ..++.+..|+++++.+|+...+|+.+|......
T Consensus 182 p-------------------~~-~~--~~~~~~~~l~~~~------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~- 232 (287)
T 3qou_A 182 Q-------------------DT-RY--QGLVAQIELLXQA------ADTPEIQQLQQQVAENPEDAALATQLALQLHQV- 232 (287)
T ss_dssp C-------------------SH-HH--HHHHHHHHHHHHH------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred c-------------------ch-HH--HHHHHHHHHHhhc------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-
Confidence 0 00 00 1111111111110 113467889999999999999999999875531
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
.-...|+..|.+.+...+ .+ .-+.-.+|..++-..|...+.....++.+
T Consensus 233 -------------g~~~~A~~~l~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 233 -------------GRNEEALELLFGHLRXDL-----TAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp -------------TCHHHHHHHHHHHHHHCT-----TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------ccHHHHHHHHHHHHhccc-----ccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 133478999999988752 22 13345667777777777666555555443
No 209
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=90.01 E-value=7 Score=42.99 Aligned_cols=107 Identities=12% Similarity=0.054 Sum_probs=71.1
Q ss_pred HHhhcccCCCh--HHHHHHHHHHHHHhhhCCCcchHHHH-HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chh
Q 000196 115 MRTVFEVKRDR--EILVLASKVLGHLARAGGAMTADEVE-FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNV 190 (1874)
Q Consensus 115 L~~~l~~~~d~--~v~~~aa~~lg~l~~~~g~~~~~~v~-~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~-~~~ 190 (1874)
+..++. ++|+ ++...|++++..|+..........++ .-++.+++.|.+ .+...+..|+.+|+-|+.+.+.. ..-
T Consensus 13 lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk~~I 90 (233)
T 3tt9_A 13 AVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNKLEV 90 (233)
T ss_dssp HHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 334454 4455 78888999999888642111222222 257777888865 44567888999999999765431 111
Q ss_pred chHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHH
Q 000196 191 HVAEFVDAIWVALR-DPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 191 ~l~~il~~i~~~l~-D~~~~VR~aA~~al~~~~~ 223 (1874)
.=...+|.++..|+ .++..+|+.|..||..+..
T Consensus 91 ~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 11356788888887 4789999999988887753
No 210
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.92 E-value=5.1 Score=51.29 Aligned_cols=138 Identities=16% Similarity=0.119 Sum_probs=102.3
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
++...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+...
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG----------HPEAVARLGRVRWTQQR---HAEAAVLLQQASDAA 87 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999887653 36777888899999995 689999999876531
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
.. .+.++..+|...... ...++.+..|+++.+.+|+...+|..+|......-
T Consensus 88 p~----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 88 PE----------------------HPGIALWLGHALEDA------GQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp TT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred CC----------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 10 133445555554443 24578899999999999999999999987765420
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
. -.-...|++.|-+++...
T Consensus 140 ~-----------~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 140 D-----------WRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp C-----------CTTHHHHHHHHHHHHHHT
T ss_pred c-----------cccHHHHHHHHHHHHhcC
Confidence 0 012346788888888775
No 211
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=89.82 E-value=2.4 Score=51.23 Aligned_cols=320 Identities=13% Similarity=0.185 Sum_probs=120.9
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCC
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGE 1442 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~ 1442 (1874)
.+-+.|++++|.++|.+. +++ .......+++..+|+|+.+..+-+..-.. .++ ..+-+-.+.+..++|+
T Consensus 41 A~l~~g~~~eAIdsfika----~D~----~~y~~V~~~ae~~g~~EeAi~yl~~ark~-~~~--~~i~~~Li~~Y~Klg~ 109 (449)
T 1b89_A 41 AQLQKGMVKEAIDSYIKA----DDP----SSYMEVVQAANTSGNWEELVKYLQMARKK-ARE--SYVETELIFALAKTNR 109 (449)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHcCCHHHHHHHHHcC----CCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHh-Ccc--chhHHHHHHHHHHhCC
Confidence 367789999999999753 233 23456777889999999887655432111 000 1112233458888999
Q ss_pred hhhHHHHHhhcCCCCcchhhccccccccCCCCCchHHHHHHHHHHhcChhhhHHHHHHHHHHhHhhhhHHHHHHhhcCCC
Q 000196 1443 WDQMAEYVSRLDDGDESKLRGLGNTAANGDGSSNGTFFRAVLLVRRGKVLESYERAYSNMVRVQQLSELEEVIDYCTLPV 1522 (1874)
Q Consensus 1443 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~esy~ray~~l~~lq~L~EleEii~~~~~~~ 1522 (1874)
|+.+.++++... ...+.++|..+.. .+.+..|...-.+. +.|.+--..++++. +++++++.
T Consensus 110 l~e~e~f~~~pn---~~a~~~IGd~~~~-----~g~yeeA~~~Y~~a---~n~~~LA~~L~~Lg---~yq~AVea----- 170 (449)
T 1b89_A 110 LAELEEFINGPN---NAHIQQVGDRCYD-----EKMYDAAKLLYNNV---SNFGRLASTLVHLG---EYQAAVDG----- 170 (449)
T ss_dssp HHHHTTTTTCC------------------------CTTTHHHHHHHT---TCHHHHHHHHHTTT---CHHHHHHH-----
T ss_pred HHHHHHHHcCCc---HHHHHHHHHHHHH-----cCCHHHHHHHHHHh---hhHHHHHHHHHHhc---cHHHHHHH-----
Confidence 999998876321 1233334433211 11111122111111 12232222222222 22222221
Q ss_pred CCCchhhHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 000196 1523 GNPVAEGRRAIIRNMWTERIQGTKRNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPET 1602 (1874)
Q Consensus 1523 ~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~ 1602 (1874)
.|.. .+..+|......|...|.|+.|..+-.++.
T Consensus 171 -----------------------------------~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------ 204 (449)
T 1b89_A 171 -----------------------------------ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------ 204 (449)
T ss_dssp -----------------------------------HHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------
T ss_pred -----------------------------------HHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------
Confidence 1111 246788888899999999999955432210
Q ss_pred CcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhH
Q 000196 1603 SHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWK 1682 (1874)
Q Consensus 1603 ~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~ 1682 (1874)
..|.- +. -...+|.+.|.|
T Consensus 205 --------~~ad~-----------------------l~-----------------------------~lv~~Yek~G~~- 223 (449)
T 1b89_A 205 --------VHADE-----------------------LE-----------------------------ELINYYQDRGYF- 223 (449)
T ss_dssp --------TCHHH-----------------------HH-----------------------------HHHHHHHHTTCH-
T ss_pred --------hCHhh-----------------------HH-----------------------------HHHHHHHHCCCH-
Confidence 01210 00 123446556665
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCC
Q 000196 1683 RALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGV 1762 (1874)
Q Consensus 1683 ~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~ 1762 (1874)
+++++.|+.+..+++.+.-+|..+|....+ | ..+-+...++.|...|.+.+--.-+
T Consensus 224 ------------eEai~lLe~aL~le~ah~~~ftel~il~~k----y--------~p~k~~ehl~~~~~~ini~k~~~~~ 279 (449)
T 1b89_A 224 ------------EELITMLEAALGLERAHMGMFTELAILYSK----F--------KPQKMREHLELFWSRVNIPKVLRAA 279 (449)
T ss_dssp ------------HHHHHHHHHHTTSTTCCHHHHHHHHHHHHT----T--------CHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred ------------HHHHHHHHHHhCCcHHHHHHHHHHHHHHHh----c--------CHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 567888888888888888888888766443 2 1234555666665444331000000
Q ss_pred cchHHhHHHHHHHHHhcCCcHHHHHHHHhcc-cCCChhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhhHHH
Q 000196 1763 DDSLQDILRLLTLWFNHGATEEVQIALQKGF-AHVNINTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQALMYP 1841 (1874)
Q Consensus 1763 ~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~-~~ip~~~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPqa~ly~ 1841 (1874)
...+--+-+..|.+.+++......+|.++. ..=....|..+| ..+... .+....+.=....||..+-.-
T Consensus 280 -~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~----~kv~n~-----elyYkai~fyl~~~p~~l~~l 349 (449)
T 1b89_A 280 -EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII----TKVANV-----ELYYRAIQFYLEFKPLLLNDL 349 (449)
T ss_dssp -HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHH----HHCSST-----HHHHHHHHHHHHHCGGGHHHH
T ss_pred -HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHH----hchhHH-----HHHHHHHHHHHhcCHHHHHHH
Confidence 112223446667778887766555665553 223334444443 333332 233333333347888887777
Q ss_pred HHHHhcCCcHHH
Q 000196 1842 LLVACKSISNLR 1853 (1874)
Q Consensus 1842 L~v~~kS~~~~R 1853 (1874)
|+++..--+..|
T Consensus 350 l~~l~~~ld~~r 361 (449)
T 1b89_A 350 LMVLSPRLDHTR 361 (449)
T ss_dssp HHHHGGGCCHHH
T ss_pred HHHHHhccCcHH
Confidence 777755444444
No 212
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.75 E-value=41 Score=40.44 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=79.9
Q ss_pred HHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHH
Q 000196 71 YDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEV 150 (1874)
Q Consensus 71 ~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v 150 (1874)
.+.+.+|+...|...|..||-+|-.++.- ..+.|.++.|.+++. .+|..-+...-++|-.|.... +..-+
T Consensus 67 i~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLq-tdd~~E~~~V~~sL~sllk~D---pk~tl 136 (507)
T 3u0r_A 67 INAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQ-TDDSAEFNLVNNALLSIFKMD---AKGTL 136 (507)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHC---HHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHh-ccchHHHHHHHHHHHHHHhcC---hHHHH
Confidence 45567889999999888888877777633 247899999999997 568888888888888877641 12222
Q ss_pred HHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcC-ccchhchHHHH-HHHHHhhcCC
Q 000196 151 EFQVKMALDWLRGDRVEYRRFAAVLILKEMAENAS-TVFNVHVAEFV-DAIWVALRDP 206 (1874)
Q Consensus 151 ~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p-~~~~~~l~~il-~~i~~~l~D~ 206 (1874)
..++..+.. +.+..|.-.+.+|+.-....| ..+...+..++ ..|-..|.|-
T Consensus 137 ~~lf~~i~~-----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV 189 (507)
T 3u0r_A 137 GGLFSQILQ-----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV 189 (507)
T ss_dssp HHHHHHHHH-----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcc-----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence 333333333 346788888888776555544 35555555544 4455666554
No 213
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=89.74 E-value=1.9 Score=42.13 Aligned_cols=105 Identities=12% Similarity=-0.028 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|+..+....+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..+++.+.--.
T Consensus 16 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~P 82 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPE----------REEAWRSLGLTQAENEK---DGLAIIALNHARMLDP 82 (121)
T ss_dssp GCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCT
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 3456889999999999999999999999887663 46777888888888885 6899999988765311
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1874)
. ...-...++.+|...|+| ++.+..|+++++.+|++.+
T Consensus 83 ~---------------~~~~~~~la~~~~~~g~~-------------~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 83 K---------------DIAVHAALAVSHTNEHNA-------------NAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp T---------------CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHC-------
T ss_pred C---------------CHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCcCCCC
Confidence 0 011123466777777765 5677899999999887643
No 214
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.69 E-value=2.7 Score=47.41 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=74.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccc--cCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch---------hh--
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSN--RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE---------LD-- 1356 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~--~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---------~~-- 1356 (1874)
.+|.+....+.|..|+.+++......... ...+........|..+|..+|+.+.+...+..+... ..
T Consensus 48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 127 (283)
T 3edt_B 48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA 127 (283)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 44555566666777776666544321000 001112345667888999999999888777643321 00
Q ss_pred --hhhcHHHHHHhcCHHHHHHHHHHHHhcc-----CCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1357 --VQLKESWYEKLQRWDDALKAYTNKASQA-----SNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1357 --~~~~~~~~E~lg~W~~Al~~y~~~~~~~-----~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
....+..|...|+|++|+.+|++.+... ++..........+-+|+..+|+|+.-....+
T Consensus 128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1122335788899999999998877531 1122223455677788888898876554443
No 215
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=89.67 E-value=11 Score=44.96 Aligned_cols=159 Identities=11% Similarity=-0.014 Sum_probs=93.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc------h-hh----hh
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK------E-LD----VQ 1358 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~------~-~~----~~ 1358 (1874)
.+|.+...-|.|.+|+.+.+....-.+............-.|..+|..+|+.+.|.-.++.+-. . .. ..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 4566666777788888887766532211100011123556789999999999998887764332 1 10 11
Q ss_pred hcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhC---HHHHHHHHhhhcCCCChHHHHhHHHH
Q 000196 1359 LKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALAR---WEELNNLCKEYWTPAEPAARLEMAPM 1432 (1874)
Q Consensus 1359 ~~~~~~E~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~---w~~l~~~~~~~~~~~~~~~~~~~~~~ 1432 (1874)
..+..|.++|++++|+.+|++.+... .++.. ......+-.++...|+ ++......+.. ............
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY-LSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 23445889999999999999987532 12211 1112334455667777 44444444432 122333444556
Q ss_pred HHHHHHHcCChhhHHHHHhh
Q 000196 1433 AANAAWNMGEWDQMAEYVSR 1452 (1874)
Q Consensus 1433 ~a~aaw~l~~Wd~~~~~~~~ 1452 (1874)
.+...+.+|+++.-.+|...
T Consensus 345 la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 67888889999887766553
No 216
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.31 E-value=2 Score=44.45 Aligned_cols=110 Identities=14% Similarity=0.002 Sum_probs=68.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++....+.+.|.+|+.+++..+... +......-.+..+|..+|+.+.+.-.++.+... .+ ....+..|
T Consensus 16 ~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 16 SEGNAAMARKEYSKAIDLYTQALSIA------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45667777788888888777666432 334566677888888888888877766643221 00 11233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
.++|+|++|+.+|++.+...++... .-...++.+|...+++
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~l~~~~~~~~~ 130 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGS-DAMKRGLETTKRKIEE 130 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHHHHHH
Confidence 7888888888888887765443321 1134555666555554
No 217
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=89.01 E-value=2.1 Score=41.79 Aligned_cols=88 Identities=11% Similarity=0.011 Sum_probs=53.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.+|....+.+.|..|+.+++..+... ++.....-.+..+|..+|+.+.+.-.++.+-.. .+ .-..+..+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRA------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45777778888888888887766432 233455666777777777777666655543211 00 11223346
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000196 1365 EKLQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~ 1383 (1874)
.++|+|++|+..|++.+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 6777777777777766654
No 218
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.96 E-value=6.7 Score=45.05 Aligned_cols=190 Identities=11% Similarity=0.059 Sum_probs=111.6
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHh
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSL-GEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~-g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
....|...+.+.++.|+++.|...+.++..+.+.... . ..........+.++..+ |+ ..+|+..+++.+.-.
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~--~--~~~a~~~~~lg~~~~~~lg~---~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ--F--RRGANFKFELGEILENDLHD---YAKAIDCYELAGEWY 148 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--H--HHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC--H--HHHHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHHHH
Confidence 3678889999999999999999998888765432110 0 00123344555666665 74 689999998866532
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH-------HHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK-------AWHSWA 1719 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k-------~w~~wA 1719 (1874)
.. .......+.++..+|.-...+ ...++.+..|+++++..|+... +|...|
T Consensus 149 ~~----------------~~~~~~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 149 AQ----------------DQSVALSNKCFIKCADLKALD------GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HH----------------TTCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred Hh----------------CCChHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 21 112234577888888888765 4589999999999999886543 344444
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCChh
Q 000196 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNIN 1799 (1874)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~~ 1799 (1874)
..... . .-...|+..|-+++.+.+.... ......+..+.. .++.++..+..+++...-.-+...
T Consensus 207 ~~~~~-------~-------g~~~~A~~~~~~al~l~p~~~~-~~~~~~l~~l~~-~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 207 LCQLA-------A-------TDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLID-AVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHH-------T-------TCHHHHHHHHHGGGCC----------HHHHHHHHH-HHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHH-------c-------CCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHH-HHHcCCHHHHHHHHHHhccCCccH
Confidence 33221 1 1245788899888887532110 111111222333 445555555666666553334444
Q ss_pred hHH
Q 000196 1800 TWL 1802 (1874)
Q Consensus 1800 ~wl 1802 (1874)
.|.
T Consensus 271 ~~~ 273 (292)
T 1qqe_A 271 KWK 273 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 219
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=88.92 E-value=15 Score=40.11 Aligned_cols=191 Identities=10% Similarity=-0.021 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|...+....+.|+++.|...+.++....|... ..+...+..+...+..|+ ..+|+..++.+++....
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~a~~~lg~~~~~~~~---~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-------YSQQVQLDLIYAYYKNAD---LPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-------THHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHCcC
Confidence 45678888999999999999999999887655311 124677888889999995 68999999998864321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhh-----hHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH-
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGS-----WKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN- 1722 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~-----w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n- 1722 (1874)
.... ..---.++.++..+|. |.............++.+..|+++++.+|+...+|.......
T Consensus 74 ~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 74 HPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp CTTH------------HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred CCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 1000 0001224444444331 100000001123578899999999999999877765332211
Q ss_pred --HH-------HHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHh
Q 000196 1723 --TA-------VMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQK 1791 (1874)
Q Consensus 1723 --~~-------~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~ 1791 (1874)
.. +-..+.. ..-...|+..|-+.+...+ +....-+...++-.+++..|...+..+.++.
T Consensus 142 ~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~ 209 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTE-------RGAWVAVVNRVEGMLRDYP---DTQATRDALPLMENAYRQMQMNAQAEKVAKI 209 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHST---TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------cCcHHHHHHHHHHHHHHCc---CCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 11 0011111 1123578888888887642 1122335677888888888887766555543
No 220
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.62 E-value=13 Score=41.58 Aligned_cols=133 Identities=14% Similarity=0.027 Sum_probs=90.4
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.....|...+.+....|+++.|...+.++..........+. ...+.+....+.+++..|+ ..+|+..+++.+...
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~ 115 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH--PAVAATLNNLAVLYGKRGK---YKEAEPLCKRALEIR 115 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence 34788999999999999999999999887754210000000 0124556677888888885 688999998876543
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhh--------cccchHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQC--------ATKWGKAWHSW 1718 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~--------~~~~~k~w~~w 1718 (1874)
... ...+....+.++..+|...... ...++....|+++.+. ++....+|..+
T Consensus 116 ~~~--------------~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 116 EKV--------------LGKFHPDVAKQLNNLALLCQNQ------GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp HHH--------------HCTTCHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHH--------------cCCCChHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 210 0011234567777777776554 3578899999999988 66677788888
Q ss_pred HHHHHH
Q 000196 1719 ALFNTA 1724 (1874)
Q Consensus 1719 A~~n~~ 1724 (1874)
|..+..
T Consensus 176 a~~~~~ 181 (283)
T 3edt_B 176 ASCYLK 181 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 221
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=88.56 E-value=13 Score=43.96 Aligned_cols=248 Identities=13% Similarity=0.138 Sum_probs=127.6
Q ss_pred hChHHHHHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHH
Q 000196 58 LGGEAFSRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVL 135 (1874)
Q Consensus 58 ~~~~~~~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l 135 (1874)
..+....+|+++ ++.++.+++.|+|+++|..--..+-.+.+...+ ..+.+++- .+.+-+.+-......-+..--+++
T Consensus 117 f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~-~R~~Irk~innif~~fiye~e~~~GIaeLLeil 195 (403)
T 3fga_B 117 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 195 (403)
T ss_dssp CCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred cChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 344445566544 566788999999999998544444333322111 11223222 222222221111222233456677
Q ss_pred HHHhhh-CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHH
Q 000196 136 GHLARA-GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1874)
Q Consensus 136 g~l~~~-~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA 214 (1874)
|.+... .-.+..++..++.+.+++.-....-......-..++.+..+.-|++..+.+..++ ..|..-..++. |
T Consensus 196 gsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~tns~Ke-v---- 269 (403)
T 3fga_B 196 GSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKTHSPKE-V---- 269 (403)
T ss_dssp HHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HTCCSSCHHHH-H----
T ss_pred HHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHH-HhCCCCCcHHH-H----
Confidence 877764 2234567777777777766554333333333334455566666766555544444 23333222221 1
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHH----HHHH-
Q 000196 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEI----VLRY- 289 (1874)
Q Consensus 215 ~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~----ll~~- 289 (1874)
.-|+.+.+++..-++..-......++..+...+.++. -.+...|+...+.= .--..+.++...+++. +.+.
T Consensus 270 -lFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~h-fqVAErAL~~wnNe--~i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 270 -MFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp -HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHhccH--HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 1234333333333333334556677777777887764 45566665543100 0001222233333333 3332
Q ss_pred hhcchhHHHHHHHHHhHhHhhhChhhH
Q 000196 290 LEHRDRLVRLSITSLLPRIAHFLRDRF 316 (1874)
Q Consensus 290 ~~~~~~~vr~~~~~~i~~la~~~~~~f 316 (1874)
.+|=++.||..+.+++..+.+.++.-|
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~d~~lF 372 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEMNQKLF 372 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHccCHHHHHHHHHHHHHHHHhCHHHH
Confidence 345689999999999999888777654
No 222
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=88.46 E-value=4.9 Score=47.40 Aligned_cols=127 Identities=12% Similarity=-0.036 Sum_probs=90.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCccccc-----CCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVR-----YHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~-----~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
....|...+....+.|+++.|...+.++..+.|........ ......+.+..+.++...|+ ..+|+..++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA---FSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Confidence 46788999999999999999999999998876642100000 00003566777788888885 68999999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
+.... ..+++++.+|.-...+ ...++.+..|++|++++|+...+|..+|...
T Consensus 223 l~~~p----------------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 223 LELDS----------------------NNEKGLSRRGEAHLAV------NDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHCT----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHhCC----------------------CcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 65311 0134455566555544 2468899999999999999999999998876
Q ss_pred HHH
Q 000196 1723 TAV 1725 (1874)
Q Consensus 1723 ~~~ 1725 (1874)
...
T Consensus 275 ~~~ 277 (336)
T 1p5q_A 275 QRI 277 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 223
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=88.20 E-value=3.9 Score=49.12 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=99.6
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch----h--hh------h
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE----L--DV------Q 1358 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~--~~------~ 1358 (1874)
.|......|.|..|+.+.+....-..............-.|..+|..+|+++.+...+..+-.. . .. .
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 4667778889999998887665322111000111234567899999999999988777643221 1 11 1
Q ss_pred hcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC----CCChHHHHhHHH
Q 000196 1359 LKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT----PAEPAARLEMAP 1431 (1874)
Q Consensus 1359 ~~~~~~E~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~----~~~~~~~~~~~~ 1431 (1874)
..+..|..+|+|++|++.|++.+... .++.........+-.|+..+|+++.-..+.+.... ..++.. .....
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 23445889999999999999987532 12211123345667788899999766655543221 012222 33334
Q ss_pred HHHHHHHHcCChhhHHHHHhh
Q 000196 1432 MAANAAWNMGEWDQMAEYVSR 1452 (1874)
Q Consensus 1432 ~~a~aaw~l~~Wd~~~~~~~~ 1452 (1874)
..+.+.+++|+++.-.++...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 556788889999887766553
No 224
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=88.15 E-value=9.8 Score=38.92 Aligned_cols=124 Identities=18% Similarity=0.113 Sum_probs=78.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHH
Q 000196 1617 YAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPE 1696 (1874)
Q Consensus 1617 ~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~ 1696 (1874)
+.....+...|+ ..+|+...++.+.-....+.. .........+.+|.-+|.=...+ ...++
T Consensus 15 ~~~G~~l~~~g~---~eeAi~~Y~kAL~l~p~~~~~----------~a~~~~~~~a~a~~n~g~al~~L------gr~~e 75 (159)
T 2hr2_A 15 LSDAQRQLVAGE---YDEAAANCRRAMEISHTMPPE----------EAFDHAGFDAFCHAGLAEALAGL------RSFDE 75 (159)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHTTSCTT----------SCCCHHHHHHHHHHHHHHHHHHT------TCHHH
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHhhCCCCcch----------hhhhhccchHHHHHHHHHHHHHC------CCHHH
Confidence 455566667774 688999888876533221100 00011122344565566555544 24678
Q ss_pred HHHHHHHHHhh-------cccchHHH----HHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch
Q 000196 1697 IIAAYRNATQC-------ATKWGKAW----HSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS 1765 (1874)
Q Consensus 1697 i~~~y~~a~~~-------~~~~~k~w----~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~ 1765 (1874)
.+..|.+|+++ +|++.++| +..|.....+ .-...|+.+|-++|.+.+...|...-
T Consensus 76 Al~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l--------------gr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 76 ALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL--------------GRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred HHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC--------------CCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 88889999988 99999999 8888665432 13348999999999998766665555
Q ss_pred HHhHHHHH
Q 000196 1766 LQDILRLL 1773 (1874)
Q Consensus 1766 ~q~~~RlL 1773 (1874)
++.+-+.+
T Consensus 142 ~~~~~~~~ 149 (159)
T 2hr2_A 142 KERMMEVA 149 (159)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 225
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=88.07 E-value=25 Score=42.54 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=39.5
Q ss_pred CchhHHHHHHhhccc-ccC--CCcchh--hHHHHHhhhccCCChHHHHHHHHHhHHhhhc
Q 000196 478 GSAPVQLALQTLARF-NFK--GHDLLE--FARDSVVLYLDDEDKATRKDAALCCCKLVAN 532 (1874)
Q Consensus 478 ~~~~~~~Al~~L~~~-~f~--~~~l~~--~v~~~~~~~l~~~~~~VR~aAa~~~~~l~~~ 532 (1874)
|+...+.||.=+|+| .+. |....+ -.++.+..++.|++++||..|-.++.+++..
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 455778999999998 332 221111 1346678899999999999999988887753
No 226
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=87.86 E-value=2.6 Score=40.85 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=67.6
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh-h-----------h
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL-D-----------V 1357 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~-~-----------~ 1357 (1874)
.+|....+.+.|.+|+.+++...... +........+..+|...|+.+.+.-.+....... . .
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 46777778888888988887766432 2334566778888888888888877666432110 0 1
Q ss_pred hhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhC
Q 000196 1358 QLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALAR 1406 (1874)
Q Consensus 1358 ~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~ 1406 (1874)
...+..|.+.|+|++|..+|++.+...+++ +....+-+|...+++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTP----DVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHHHH
Confidence 122335788888888888888877654432 333444455554443
No 227
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=87.63 E-value=14 Score=40.27 Aligned_cols=117 Identities=18% Similarity=0.129 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCC
Q 000196 1612 PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDD 1691 (1874)
Q Consensus 1612 ~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~ 1691 (1874)
++...+..+..+...|+ ..+|+..++.++..... ......+++.+|......
T Consensus 3 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~~~~~p~-------------------~~~~~~a~~~lg~~~~~~------ 54 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGN---WRQAITQLEALDNRYPF-------------------GPYSQQVQLDLIYAYYKN------ 54 (225)
T ss_dssp CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHCTT-------------------STTHHHHHHHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-------------------ChHHHHHHHHHHHHHHhc------
Confidence 46778888999999995 78999999998864321 112233444444444433
Q ss_pred CCHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHHH----hhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1692 ESIPEIIAAYRNATQCATKWGK---AWHSWALFNTAVMS----HYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1692 ~~~~~i~~~y~~a~~~~~~~~k---~w~~wA~~n~~~~~----~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
...++.+..|.++++.+|+... +|+.+|....+.-. .+...........-...|+..|-+.+...
T Consensus 55 ~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 55 ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 2357788999999999998765 78888877654210 00000000111235568899998888764
No 228
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=87.47 E-value=45 Score=38.13 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhhcCc---cchhchHHHHHHHHHhhcCCchhHHHHH-HHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 000196 170 RFAAVLILKEMAENAST---VFNVHVAEFVDAIWVALRDPTLAVRERA-VEALRACLRVIEKRETRWRVQWYYRMFEATQ 245 (1874)
Q Consensus 170 r~aA~~~l~~la~~~p~---~~~~~l~~il~~i~~~l~D~~~~VR~aA-~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~ 245 (1874)
|..-+.++....+.+++ .....++.+++.++.--++..|..|++- ...+..+..-+.+.-....+..+..+++.+.
T Consensus 46 KkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL 125 (321)
T 1w9c_A 46 KRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTL 125 (321)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44555566666666655 3456778888887777666667777653 3333334444443334466778888888888
Q ss_pred hhccCC--CChhHHHHHHHHHHHHHHcchhh-h---HHHHHHHHHHHHHHhhcchhHHHHHHHHHhHh----Hhhh--Ch
Q 000196 246 DGLGRN--APVHSIHGSLLAVGELLRNTGEF-M---MSRYREVAEIVLRYLEHRDRLVRLSITSLLPR----IAHF--LR 313 (1874)
Q Consensus 246 ~~l~~~--~~~~~~~~al~~l~~ll~~~~~~-~---~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~----la~~--~~ 313 (1874)
+-++++ +-+|.|.+--..|.++..++-.. + .+.+..+++.++-..+|.++.|....+.++-. ++.. ..
T Consensus 126 ~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~ 205 (321)
T 1w9c_A 126 NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAA 205 (321)
T ss_dssp HHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHH
Confidence 877653 23788998888999988855432 2 25778889999999999999999887655544 3321 12
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCC
Q 000196 314 DRFVTNYLKICMNHILTVLRIPAE 337 (1874)
Q Consensus 314 ~~f~~~yl~~~~~~Ll~~L~~~~~ 337 (1874)
..|.+.|+-.++..++.++.+...
T Consensus 206 ~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 206 QSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCchh
Confidence 346667778888888888876543
No 229
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=87.33 E-value=26 Score=44.03 Aligned_cols=176 Identities=9% Similarity=0.070 Sum_probs=112.0
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
+....|+.++.+..+.|+++.|.....++...+|. .+..+.+.++.++...| +..+|...++..+...
T Consensus 319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~~~~~~~~---~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI---------DPTLVYIQYMKFARRAE---GIKSGRMIFKKAREDA 386 (530)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS---------CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCT
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc---------CchHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999998876442 11246677777777777 3577888777654311
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVM 1726 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~ 1726 (1874)
. .......+.++. +|.. ....++..+.|..+++.+|+....|..+|.+..+
T Consensus 387 ~-----------------~~~~~~~~~a~~---~~~~-------~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-- 437 (530)
T 2ooe_A 387 R-----------------TRHHVYVTAALM---EYYC-------SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-- 437 (530)
T ss_dssp T-----------------CCTHHHHHHHHH---HHHH-------TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--
T ss_pred C-----------------CchHHHHHHHHH---HHHH-------cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh--
Confidence 0 001111222211 1211 1357889999999999999999999999877321
Q ss_pred HhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1727 SHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1727 ~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
. .-...|...|-+++...+. .+.....-..+.+..-.++|+.+.+.....+.....|
T Consensus 438 -----~-------g~~~~Ar~~~~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 438 -----L-------NEDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp -----T-------TCHHHHHHHHHHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred -----C-------CCHhhHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1 1234677888888875311 0111111223344455667888777766666655554
No 230
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=87.24 E-value=4.6 Score=52.86 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=83.8
Q ss_pred HHhhhcCCCcchhHHHHHHHHHHHHhhcCc-cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHH
Q 000196 157 ALDWLRGDRVEYRRFAAVLILKEMAENAST-VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQ 235 (1874)
Q Consensus 157 ~~~~l~~~~~~~~r~aA~~~l~~la~~~p~-~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~ 235 (1874)
+++-|++ .+...|..|+.+|+.|+++... .+.-+-..|.+.|-..|.|++..||.+|+.||+.+...- +.....+
T Consensus 39 ll~~L~S-~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~---g~d~~~~ 114 (684)
T 4gmo_A 39 VLKDLKS-PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE---EADFCVH 114 (684)
T ss_dssp HHHHHSS-SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS---CHHHHHH
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc---CchHHHH
Confidence 4445554 4557899999999999975332 222233334445556789999999999999999875321 1111111
Q ss_pred -----HHH---HHHHHHHhhccCC------CC-------hhHHHHHHHHHHHHHHcchhhhHHHH-HHHHHHHHHHhhc-
Q 000196 236 -----WYY---RMFEATQDGLGRN------AP-------VHSIHGSLLAVGELLRNTGEFMMSRY-REVAEIVLRYLEH- 292 (1874)
Q Consensus 236 -----~~~---~i~~~~~~~l~~~------~~-------~~~~~~al~~l~~ll~~~~~~~~~~~-~~i~~~ll~~~~~- 292 (1874)
.+. .++......+... .. ++.....+.+|..|.+.+.+.+..-. ...+..++..+.+
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~ 194 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISA 194 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhc
Confidence 111 1222221111110 00 12233455566666665544332211 1233444444422
Q ss_pred --chhHHHHHHHHHhHhHhhhCh
Q 000196 293 --RDRLVRLSITSLLPRIAHFLR 313 (1874)
Q Consensus 293 --~~~~vr~~~~~~i~~la~~~~ 313 (1874)
....++.++..+|-.++..++
T Consensus 195 ~~~~~~v~~~a~~~L~~ls~dn~ 217 (684)
T 4gmo_A 195 DIAPQDIYEEAISCLTTLSEDNL 217 (684)
T ss_dssp CCSCHHHHHHHHHHHHHHHTTCH
T ss_pred CCCcHHHHHHHHHHHHHHhccCH
Confidence 346799999999998887655
No 231
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=87.17 E-value=5.1 Score=51.27 Aligned_cols=151 Identities=10% Similarity=0.002 Sum_probs=90.6
Q ss_pred cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccc
Q 000196 1582 SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLT 1661 (1874)
Q Consensus 1582 ~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~ 1661 (1874)
+|+++.|...+.++...+|. .+...+..+..++..|+ ..+|+..+++.+....
T Consensus 2 ~g~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p-------------- 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ----------DFVAWLMLADAELGMGD---TTAGEMAVQRGLALHP-------------- 54 (568)
T ss_dssp -------------------C----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHTTST--------------
T ss_pred CccHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC--------------
Confidence 46778888888777765542 46778888999999995 6899999888664210
Q ss_pred cccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhH
Q 000196 1662 TATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQF 1741 (1874)
Q Consensus 1662 ~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~ 1741 (1874)
..+.++..+|.-.... ...++....|++|++.+|+...+|+.+|..+.+. + -
T Consensus 55 --------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------g-------~ 106 (568)
T 2vsy_A 55 --------GHPEAVARLGRVRWTQ------QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-------G-------Q 106 (568)
T ss_dssp --------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-------T-------C
T ss_pred --------CCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-------C-------C
Confidence 0133455555554443 3467889999999999999999999998775541 1 2
Q ss_pred HHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhc---CCcHHHHHHHHhcc
Q 000196 1742 VVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNH---GATEEVQIALQKGF 1793 (1874)
Q Consensus 1742 ~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~---g~~~~v~~~~~~~~ 1793 (1874)
...|++.|-+++.+.+ ........+-.+.... |+.++..+.+++.+
T Consensus 107 ~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 107 AEAAAAAYTRAHQLLP------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 3478888999888752 2344556666677777 77766666555554
No 232
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=87.09 E-value=5 Score=43.16 Aligned_cols=117 Identities=14% Similarity=0.090 Sum_probs=72.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~ 1364 (1874)
.+|....+.+.|..|+.+++.... + .....-.+..+|..+|+.+.+...+..+... . .....+..|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~--------~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQD--------P-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSS--------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcC--------C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 456777788888889888776541 1 2456677888888888888887777643321 0 011233457
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCc-------------hhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPH-------------IVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~-------------~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
.+.|+|++|+..|++.+...++.. ...+....+-.|+..+|+|+.-....+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 788888888888888776433211 012344555566666676655544443
No 233
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.07 E-value=6.4 Score=51.64 Aligned_cols=157 Identities=10% Similarity=-0.068 Sum_probs=108.2
Q ss_pred HhcCChhHHHHHHHHHh--------cCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCc
Q 000196 1580 RKSGRISQARSTLVKLL--------QYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV 1651 (1874)
Q Consensus 1580 Rk~g~~~~a~~~L~~l~--------~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~ 1651 (1874)
-..|+++.|...+.++. ..+| ..+...+..+..+...|+ ..+|+..++..+..-..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p----------~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~--- 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS----------ESVELPLMEVRALLDLGD---VAKATRKLDDLAERVGW--- 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT----------TCSHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHCC---
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc----------cchhHHHHHHHHHHhcCC---HHHHHHHHHHHhccCcc---
Confidence 67899999999998887 4333 245778888999999995 68999999987753211
Q ss_pred cccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhc
Q 000196 1652 IQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTL 1731 (1874)
Q Consensus 1652 ~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~ 1731 (1874)
.++++..+|.-.... ...++.+..|++|++++|+...+|+..|..+.+.
T Consensus 466 -------------------~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~------ 514 (681)
T 2pzi_A 466 -------------------RWRLVWYRAVAELLT------GDYDSATKHFTEVLDTFPGELAPKLALAATAELA------ 514 (681)
T ss_dssp -------------------CHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH------
T ss_pred -------------------hHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc------
Confidence 123344444444333 2357889999999999999999999999886542
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1732 RGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1732 ~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
++.+ . ++.|-+++.+. + ........+=.+++..|..++....+++.+..=|-
T Consensus 515 -g~~~-------~-~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 515 -GNTD-------E-HKFYQTVWSTN-----D-GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp -TCCC-------T-TCHHHHHHHHC-----T-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred -CChH-------H-HHHHHHHHHhC-----C-chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 1111 2 44556666664 2 23445566777788889888877778877765553
No 234
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=86.86 E-value=49 Score=37.90 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=108.7
Q ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhhh-CCCcc--hHHHHHHHHHHHhhh-cCCCcchhHHHHHHHHHHHHhhcC--
Q 000196 112 SNYMRTVFEVKRDREILVLASKVLGHLARA-GGAMT--ADEVEFQVKMALDWL-RGDRVEYRRFAAVLILKEMAENAS-- 185 (1874)
Q Consensus 112 ~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~-~g~~~--~~~v~~~~~~~~~~l-~~~~~~~~r~aA~~~l~~la~~~p-- 185 (1874)
...|...++ .-|.+.++-++.++..+... .|+.. .+++... +.++.+| .+.....--.-+=.+|++.+.+-+
T Consensus 80 l~~Li~~l~-~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 80 LSTLVADLQ-LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp HHHHHHTGG-GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHhcc-cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 334555565 34789999999999988875 23322 2344432 2233332 221111111222234555554411
Q ss_pred c-cch-hchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHH
Q 000196 186 T-VFN-VHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLA 263 (1874)
Q Consensus 186 ~-~~~-~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~ 263 (1874)
. .++ +++-.++ .-+..|+-.|-..|...++.++.--..-....-...|..++.....-+.++ ...++.-|+..
T Consensus 158 ~~iL~~~~f~~fF----~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSlKL 232 (341)
T 1upk_A 158 KIILWSEQFYDFF----RYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKL 232 (341)
T ss_dssp HHHHHSGGGGHHH----HHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred HHHhccHHHHHHH----HHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHHHH
Confidence 1 221 2333333 456678888844444444444331110001122233455666555544454 48899999999
Q ss_pred HHHHHHc--chhhhHHHHHH--HHHHHHHHhhcchhHHHHHHHHHhHhHhh
Q 000196 264 VGELLRN--TGEFMMSRYRE--VAEIVLRYLEHRDRLVRLSITSLLPRIAH 310 (1874)
Q Consensus 264 l~~ll~~--~~~~~~~~~~~--i~~~ll~~~~~~~~~vr~~~~~~i~~la~ 310 (1874)
||+++-. ....|..|+.+ -+..++.++++++..||-.+.++.....+
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 9999883 44567776653 45577788899999999999999987664
No 235
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.73 E-value=18 Score=41.32 Aligned_cols=188 Identities=15% Similarity=0.080 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...+-+-+.+.+..|+++.|..+..++..+.+..... ..........+.++...|+ ..+|+..+++.+.-...
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~ 109 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE----DEAGNTYVEAYKCFKSGGN---SVNAVDSLENAIQIFTH 109 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence 4556666788899999999999988877653211000 0013445566677778885 68899999886643211
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1874)
..+....+.++..+|.-.... ....++.+.+|++|+++.|+. ..+|..+|.+.
T Consensus 110 ----------------~g~~~~~a~~~~~lg~~~~~~-----lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 168 (292)
T 1qqe_A 110 ----------------RGQFRRGANFKFELGEILEND-----LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK 168 (292)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHT-----TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 122334577788888777652 035799999999999998754 34555556554
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.+ .+ -...|+..|-+++..........+. .....++-.+++..|+..+....+++.+.--|.
T Consensus 169 ~~-------~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 231 (292)
T 1qqe_A 169 AL-------DG-------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231 (292)
T ss_dssp HH-------TT-------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HH-------hC-------CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 32 11 2347899999999875311000111 123566777788889988888888888775554
No 236
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=86.68 E-value=3.7 Score=41.68 Aligned_cols=86 Identities=8% Similarity=-0.075 Sum_probs=41.1
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHHHH
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWYEK 1366 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~E~ 1366 (1874)
+....+.|.|..|+.+++..... +++.......|..+|..+|+++.+.-.++.+... . . .-..+..|..
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVL------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44445555566666555544322 1223344455556666666666555555432210 0 0 0112223555
Q ss_pred hcCHHHHHHHHHHHHhc
Q 000196 1367 LQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~ 1383 (1874)
+|++++|+.+|++.+..
T Consensus 102 ~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 102 XGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 66666666666655543
No 237
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=86.57 E-value=4.9 Score=38.30 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=47.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~ 1364 (1874)
.++....+.+.|.+|+.+++...... +........+..+|...|+.+.+...++..... . . .......|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 34555566666777776666554321 222345556666666667666666655533211 0 0 11123345
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000196 1365 EKLQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~ 1383 (1874)
.+.|+|++|...|++.+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666777777776666544
No 238
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=86.07 E-value=3.4 Score=43.19 Aligned_cols=165 Identities=14% Similarity=0.030 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
.+.++..+....+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+..-.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~----------~~~a~~~la~~~~~~g~---~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQS----------RGDVKLAKADCLLETKQ---FELAQELLATIPLEYQ- 71 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT----------SHHHHHHHHHHHHHTTC---HHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------cHHHHHHHHHHHHHCCC---HHHHHHHHHHhhhccC-
Confidence 345788899999999999999999887766542 46788889999999995 6889988776432100
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~ 1728 (1874)
+ .....+.+.+.+ .+.. . . .+.+..|+++++.+|+...+|+.+|......
T Consensus 72 ~---------------~~~~~~~~~~~~-~~~~----~-----~--~~a~~~~~~al~~~P~~~~~~~~la~~~~~~--- 121 (176)
T 2r5s_A 72 D---------------NSYKSLIAKLEL-HQQA----A-----E--SPELKRLEQELAANPDNFELACELAVQYNQV--- 121 (176)
T ss_dssp C---------------HHHHHHHHHHHH-HHHH----T-----S--CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---
T ss_pred C---------------hHHHHHHHHHHH-Hhhc----c-----c--chHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence 0 000111121111 1111 0 1 1347889999999999999999999875541
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcc
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGF 1793 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~ 1793 (1874)
.-...|+..|-+++...+ .+ .......+-.++...|...+....+++.+
T Consensus 122 -----------g~~~~A~~~~~~~l~~~p-----~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 122 -----------GRDEEALELLWNILKVNL-----GAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp -----------TCHHHHHHHHHHHHTTCT-----TTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHHhCc-----ccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 123478888888887742 22 12234455667777788777666666554
No 239
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=86.06 E-value=1.5 Score=57.49 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=87.5
Q ss_pred HHHHhhCCCChHhHHHHHHHHHHHHHhCccccccch-HHHHHHHH-HHhhccCCCCCChhHHHHHHHHHHHHHHhcccch
Q 000196 646 LTYLEQSSADNKCREESAKLLGCLIRNCERLIRPYI-APIHKALV-ARLLEGTGINANNGIISGVLVTVGDLARVGGFGM 723 (1874)
Q Consensus 646 l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~py~-~~il~~ll-~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~ 723 (1874)
+..|+ + .+++.|..||.+|+.+++... .-+-.. ..++..++ +.+.|+ +..|+.+++.+++.|+...|.++
T Consensus 40 l~~L~-S-~~~~~r~~A~~al~~l~~~~~-~~~l~~~~~~v~~ll~~lL~D~-----~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 40 LKDLK-S-PDAKSRTTAAGAIANIVQDAK-CRKLLLREQVVHIVLTETLTDN-----NIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHHHS-S-SCCSHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHHHTTTTCS-----CHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHcC-C-CCHHHHHHHHHHHHHHHcCcH-HHHHHHHcCCHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHhhcCchH
Confidence 33444 3 578899999999999986321 111111 13444433 345553 88899999999999998888766
Q ss_pred hhcH--HhHHHHHHHHHhcC-------------cch-------hhHHHHHHHHHHHHhhccccc---cccccchHHHHHH
Q 000196 724 RQYI--SELMPLIVEALLDG-------------AAV-------TKREVAVSTLGQVVQSTGYVI---TPYNEYPQLLGLL 778 (1874)
Q Consensus 724 ~~~~--~~llp~l~~~l~d~-------------~~~-------~~r~~A~~~Lg~l~~~~~~~i---~p~~~~p~ll~~L 778 (1874)
..++ ..++|.+...+... ... ..-++++..|..++++....+ .-....|.++..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 5543 23666666655321 000 112356777778877665432 1112234444444
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 779 LKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 779 l~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
... +....+++.+++.||..+.
T Consensus 192 ~~~--~~~~~~v~~~a~~~L~~ls 213 (684)
T 4gmo_A 192 ISA--DIAPQDIYEEAISCLTTLS 213 (684)
T ss_dssp HHH--CCSCHHHHHHHHHHHHHHH
T ss_pred Hhc--CCCcHHHHHHHHHHHHHHh
Confidence 332 2235789999999988764
No 240
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=86.05 E-value=5.6 Score=42.99 Aligned_cols=149 Identities=11% Similarity=-0.019 Sum_probs=84.2
Q ss_pred HHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHH----------------HHHHHhhcCChHHHhHHHHHHhc-
Q 000196 1291 LGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEA----------------LIHINNQLHQHEAAVGILTYAQK- 1353 (1874)
Q Consensus 1291 l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~----------------L~~iy~~L~~~D~~~Gi~~~~~~- 1353 (1874)
.|....+-|.|..|+.+++......+ +.....-. |..+|..+|+.|.+...++.+-.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNI------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCH------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35566677888888888877664321 12233334 88999999999999888775432
Q ss_pred hh---h-hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhh--CHHHHHHHHhhhcCCCChHHHH
Q 000196 1354 EL---D-VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALA--RWEELNNLCKEYWTPAEPAARL 1427 (1874)
Q Consensus 1354 ~~---~-~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg--~w~~l~~~~~~~~~~~~~~~~~ 1427 (1874)
.. . ....+..|...|+|++|+.+|++.+...++. .+....+-.++...| ++.......+..... .+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 157 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN---LAANIFLGNYYYLTAEQEKKKLETDYKKLSSP-TKMQ-- 157 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-CHHH--
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC-Cchh--
Confidence 11 1 1223445889999999999999998765543 233444444544444 344444333332221 1111
Q ss_pred hHHHHHHHHHHHcCChhhHHHHHh
Q 000196 1428 EMAPMAANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1428 ~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
........+...+|+++.-..+.+
T Consensus 158 ~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 158 YARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Confidence 001112334455667766555544
No 241
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=85.48 E-value=0.64 Score=51.79 Aligned_cols=64 Identities=30% Similarity=0.379 Sum_probs=43.7
Q ss_pred HhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHH
Q 000196 569 AVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTY 648 (1874)
Q Consensus 569 ~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~ 648 (1874)
...|+++.||..+...+.. +.|..+++|+++.||..+...++ ...+..
T Consensus 178 ll~D~d~~VR~aaa~~l~~--------------~~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~ 225 (244)
T 1lrv_A 178 MTQDPEPEVRRIVASRLRG--------------DDLLELLHDPDWTVRLAAVEHAS------------------LEALRE 225 (244)
T ss_dssp STTCSSHHHHHHHHHHCCG--------------GGGGGGGGCSSHHHHHHHHHHSC------------------HHHHHH
T ss_pred HHcCCCHHHHHHHHHhCCH--------------HHHHHHHcCCCHHHHHHHHHcCC------------------HHHHHH
Confidence 4678999999998887631 12345578999999998888754 023444
Q ss_pred HhhCCCChHhHHHHHHHH
Q 000196 649 LEQSSADNKCREESAKLL 666 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L 666 (1874)
| .+ .++.+|+.+...|
T Consensus 226 L-~D-~~~~VR~aa~~~L 241 (244)
T 1lrv_A 226 L-DE-PDPEVRLAIAGRL 241 (244)
T ss_dssp C-CC-CCHHHHHHHHCCC
T ss_pred c-cC-CCHHHHHHHHHHh
Confidence 6 45 6788887776544
No 242
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=85.45 E-value=7.6 Score=39.55 Aligned_cols=101 Identities=10% Similarity=-0.071 Sum_probs=74.2
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHH
Q 000196 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYF 1750 (1874)
Q Consensus 1671 ~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~ 1750 (1874)
.+..++.+|.-..+. ...++.+..|+++++++|+...+|+.+|...... .-...|+..|-
T Consensus 35 ~~~~~~~lg~~~~~~------g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~--------------g~~~~Ai~~~~ 94 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNK------GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK--------------EQFQQAADLYA 94 (151)
T ss_dssp HHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------------ccHHHHHHHHH
Confidence 345566666655443 3578999999999999999999999999876541 12348999999
Q ss_pred HHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1751 HSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1751 ~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
+++.+.+ ........+=..++..|..++-...+++.+..-|
T Consensus 95 ~al~l~P------~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 95 VAFALGK------NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHSS------SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHhhCC------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999863 2334556777778888998887777777765433
No 243
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=85.43 E-value=8.8 Score=41.93 Aligned_cols=131 Identities=11% Similarity=-0.027 Sum_probs=88.4
Q ss_pred HHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHH
Q 000196 72 DRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVE 151 (1874)
Q Consensus 72 ~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~ 151 (1874)
..+.+|.+++.-.+|+.|+..++..-.... .....++...++..+.=.+.+..|.++|.+.... ++
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~-------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~----~~--- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS-------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH----LT--- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS----GG---
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC----hH---
Confidence 344577888777888888888876642211 1233445556654455678887778888876531 11
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
...+.+.+|+.++..+.+|.|.+..+ +-.-..+...+++.+-..+.|++.-||.|.+.+|+.+..
T Consensus 124 ~~~~~i~~W~~s~~~w~rR~ai~~~l-------~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 124 ELPTIFALFYGAENFWNRRVALNLQL-------MLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp GHHHHHHHHTTCSSHHHHHHHHHTTT-------TCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH-------HHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 12345778999888888888866443 222235566777777778999999999999999998753
No 244
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=85.33 E-value=3.4 Score=41.37 Aligned_cols=86 Identities=12% Similarity=-0.024 Sum_probs=46.8
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcHHHHHH
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKESWYEK 1366 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~~~~E~ 1366 (1874)
+....+.+.|..|+.+++...... ++.....-.|..+|..+|+++.+...++.+... . . .-..+..|.+
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 445556666777776666554321 233455556666677777776666655543210 0 0 1112334566
Q ss_pred hcCHHHHHHHHHHHHhc
Q 000196 1367 LQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~ 1383 (1874)
+|+|++|+.+|++.+..
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 67777777777666543
No 245
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=84.57 E-value=5 Score=42.80 Aligned_cols=114 Identities=12% Similarity=-0.026 Sum_probs=58.1
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc-----------HHHHHHHHHHHhhcCChHHHhHHHHHHhch-h--
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP-----------VAVVEALIHINNQLHQHEAAVGILTYAQKE-L-- 1355 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~-----------~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~-- 1355 (1874)
.+|....+.+.|..|+.+.+......+... +... ......+..+|..+|+.+.+.-.+..+... .
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 121 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHTE-EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence 457777888889999988876654321110 0000 134445566666666666665554432210 0
Q ss_pred --hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCH
Q 000196 1356 --DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARW 1407 (1874)
Q Consensus 1356 --~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w 1407 (1874)
..-..+..|.++|+|++|+..|++.+...++. .+....+-+|+..+|+.
T Consensus 122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN---LDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHHHH
Confidence 01112334566666666666666665443322 23334445555555544
No 246
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=84.16 E-value=72 Score=43.76 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=91.9
Q ss_pred CChHHHHHHHHHHHHHhhh----CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHH
Q 000196 123 RDREILVLASKVLGHLARA----GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDA 198 (1874)
Q Consensus 123 ~d~~v~~~aa~~lg~l~~~----~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~ 198 (1874)
.++.+++.|.-++|.|+.. .+.-..+.++...+.+.+.+.. .++..+..++.+|+-+.. |.. ++.+.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~g~--p~~----l~~l~~- 478 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNAGQ--PNS----IKKIQR- 478 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTC--GGG----HHHHHT-
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhccCC--hhH----HHHHHH-
Confidence 3566778888899988874 1223445666666666666643 345566667777666553 322 111111
Q ss_pred HHHhh----cCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhh
Q 000196 199 IWVAL----RDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEF 274 (1874)
Q Consensus 199 i~~~l----~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~ 274 (1874)
++.+. .+...+||.+|..||+.+.. .++. .....+++...+ ...+.++|.+|+.+| +++.+..
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~----~~p~---~v~~il~~i~~n---~~e~~EvRiaA~~~L---m~t~P~~ 545 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAK----RDPR---KVQEIVLPIFLN---VAIKSELRIRSCIVF---FESKPSV 545 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGG----TCHH---HHHHHHHHHHHC---TTSCHHHHHHHHHHH---HHTCCCH
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhh----hchH---HHHHHHHHHhcC---CCCChHHHHHHHHHH---HHHCcCH
Confidence 11122 12346799999999886532 1111 122223332222 122468888877665 4432211
Q ss_pred hHHHHHHHHHHHHHHh-hcchhHHHHHHHHHhHhHhhhChhh
Q 000196 275 MMSRYREVAEIVLRYL-EHRDRLVRLSITSLLPRIAHFLRDR 315 (1874)
Q Consensus 275 ~~~~~~~i~~~ll~~~-~~~~~~vr~~~~~~i~~la~~~~~~ 315 (1874)
. ++..+...+ .+++..|+..+...|-.++......
T Consensus 546 --~----~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 546 --A----LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp --H----HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred --H----HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 1 222222223 4588999999999999999866443
No 247
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=84.09 E-value=6.9 Score=48.44 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCc---ccc--cCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSH---ENV--RYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~---~~~--~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~ 1642 (1874)
....|...+..+.+.|+++.|.....++..+++.... +.. .......+.+..+.++...|+ ..+|+..++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~---~~~A~~~~~~a 343 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE---YTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 3678899999999999999999999998876553100 000 000003556667777788884 68899999887
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
+.... -.+++++.+|.-...+ ...++.+..|++|++++|++..+|..++...
T Consensus 344 l~~~p----------------------~~~~a~~~~g~a~~~~------g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 344 LGLDS----------------------ANEKGLYRRGEAQLLM------NEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHST----------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HhcCC----------------------ccHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 65311 0134455555555443 2457889999999999999999999888776
Q ss_pred HHH
Q 000196 1723 TAV 1725 (1874)
Q Consensus 1723 ~~~ 1725 (1874)
..+
T Consensus 396 ~~~ 398 (457)
T 1kt0_A 396 KKA 398 (457)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 248
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=83.85 E-value=15 Score=38.75 Aligned_cols=127 Identities=7% Similarity=-0.026 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhcCChHHHhHHHHHHhc------hh-----hhhhcHHHHHHhcCHHHHHHHHHHHHhc---cC-CCch
Q 000196 1325 VAVVEALIHINNQLHQHEAAVGILTYAQK------EL-----DVQLKESWYEKLQRWDDALKAYTNKASQ---AS-NPHI 1389 (1874)
Q Consensus 1325 ~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~------~~-----~~~~~~~~~E~lg~W~~Al~~y~~~~~~---~~-~~~~ 1389 (1874)
......+..+|...|+++.+.-.++.+.. .. ........|...|+|++|+..|++.+.. .+ ++..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34556677777777777777665553321 00 0112233578889999999999887653 22 1111
Q ss_pred hHHhHhhHhHHHHHhhCHHHHHHHHhhhc----CCCChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000196 1390 VLEATLGRMRCLAALARWEELNNLCKEYW----TPAEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1390 ~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~----~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
.......+-.++..+|+|+.-....+... ...++..........+.+.+.+|+|+.-..+..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 12334566677888889876655544321 011222222223455678888888887766544
No 249
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=83.84 E-value=5.5 Score=47.71 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC----Ccc---cccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPET----SHE---NVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~----~~~---~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~ 1641 (1874)
...|...+..+.+.|+++.|...+.++..+.+.. ..+ ... ...+.+.+..+.++...|+ ..+|+..+++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~---~~~A~~~~~~ 298 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSD---WQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccC---HHHHHHHHHH
Confidence 5678999999999999999999988887631110 000 000 0124566677777778884 6889998887
Q ss_pred HHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
.+.. . .-.+++++.+|.-...+ ...++.+..|++|.+++|+...+|..++..
T Consensus 299 al~~-~---------------------p~~~~a~~~lg~~~~~~------g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 299 ALEI-D---------------------PSNTKALYRRAQGWQGL------KEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHTT-C---------------------TTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHh-C---------------------chhHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6531 1 01245566666666554 346889999999999999999999988877
Q ss_pred HHHH
Q 000196 1722 NTAV 1725 (1874)
Q Consensus 1722 n~~~ 1725 (1874)
...+
T Consensus 351 ~~~~ 354 (370)
T 1ihg_A 351 KQKI 354 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 250
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=83.66 E-value=4.8 Score=40.53 Aligned_cols=60 Identities=18% Similarity=0.005 Sum_probs=27.7
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILT 1349 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~ 1349 (1874)
.++......+.|..|+.+.+......+............-.+..+|..+|+.+.+...++
T Consensus 14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 73 (164)
T 3ro3_A 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556666777777776665443211000000001123345555555555555554443
No 251
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=83.08 E-value=41 Score=40.48 Aligned_cols=243 Identities=14% Similarity=0.143 Sum_probs=126.2
Q ss_pred HHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000196 64 SRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1874)
Q Consensus 64 ~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~ 141 (1874)
.+|++. ++.++.+++.|+|+++|..--..+-.+.+...+ ....+++- .+.+.+.+-......-+...-+.+|.+...
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTT-THHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 444433 566777889999999998544444444332212 22223322 232222221122223334566678877664
Q ss_pred -CCCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 000196 142 -GGAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRA 220 (1874)
Q Consensus 142 -~g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~ 220 (1874)
.-.+..++..++...+++......-......=..++.++.+..|++..+.+..++ ..|..-..++. | .-|+.
T Consensus 235 fa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~tns~Ke-v-----lFL~e 307 (449)
T 2npp_B 235 FALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKTHSPKE-V-----MFLNE 307 (449)
T ss_dssp CCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HTCCSSCHHHH-H-----HHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHH-HhCCCCCchHH-H-----HHHHH
Confidence 1234567777777766766553333333322334445556666666554444443 23332221121 1 23444
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHh-----hcchh
Q 000196 221 CLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVGELLRNTGEFMMSRYREVAEIVLRYL-----EHRDR 295 (1874)
Q Consensus 221 ~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~~~~~~~~~~i~~~ll~~~-----~~~~~ 295 (1874)
+.+++..-++..-......++..+...+.++. -.+...|+...+.= .--..+..+-..++..++..+ +|=++
T Consensus 308 leeile~~~~~ef~~i~~~lF~~la~ci~S~h-fqVAErAL~~w~N~--~i~~li~~n~~~IlPii~p~L~~~s~~HWn~ 384 (449)
T 2npp_B 308 LEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALYYWNNE--YIMSLISDNAAKILPIMFPSLYRNSKTHWNK 384 (449)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSC-HHHHHHHHGGGGCH--HHHHHHHTTHHHHHHHHHHHHTSCTTCCSST
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHCCH--HHHHHHHhchhhhHHhhHHHHHHHHHHhcCH
Confidence 44444333333444566778888888887764 45566665443100 000122223334445554433 45589
Q ss_pred HHHHHHHHHhHhHhhhChhhHH
Q 000196 296 LVRLSITSLLPRIAHFLRDRFV 317 (1874)
Q Consensus 296 ~vr~~~~~~i~~la~~~~~~f~ 317 (1874)
.||..+..++..+...++.-|-
T Consensus 385 ~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 385 TIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp THHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHH
Confidence 9999999999999888887653
No 252
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=82.69 E-value=13 Score=42.82 Aligned_cols=184 Identities=7% Similarity=0.017 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...+-+.+.+.+..|+++.|..++.++..+.+..... ..........+.+....|+ ..+|+..+++.+.-...
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~~~ 108 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSL----FHAAKAFEQAGMMLKDLQR---MPEAVQYIEKASVMYVE 108 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTC---GGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999988876553211000 0012233444566666775 46788888876643221
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFN 1722 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n 1722 (1874)
..+....+.++..+|.-... ...++.+.+|++|+++.+.. ..+|..+|.+.
T Consensus 109 ----------------~g~~~~~a~~~~~lg~~~~~-------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~ 165 (307)
T 2ifu_A 109 ----------------NGTPDTAAMALDRAGKLMEP-------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLL 165 (307)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 12234467788888876643 35899999999999988754 34555555553
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcc-hHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh
Q 000196 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDD-SLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~-~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~ 1798 (1874)
.. .+ -...|+..|-+++.+.... +... .......+..+.+..|+..+....+++.+ ..|.
T Consensus 166 ~~-------~g-------~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~ 226 (307)
T 2ifu_A 166 VR-------QQ-------KFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPG 226 (307)
T ss_dssp HH-------TT-------CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred HH-------cC-------CHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence 32 11 2347788888888764211 1111 12244555566677788888888888887 5553
No 253
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=82.69 E-value=20 Score=40.80 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..++..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~-- 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL----------VAVYYTNRALCYLKMQQ---PEQALADCRRALEL-- 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTS--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh--
Confidence 4678899999999999999999999999887653 46778888889988985 68899988875431
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc-----hHHHHHHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW-----GKAWHSWALF 1721 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~-----~k~w~~wA~~ 1721 (1874)
.+ -.++++..+|.-...+ ...++.+..|++|.+++|+. ...|......
T Consensus 68 -~p-------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 120 (281)
T 2c2l_A 68 -DG-------------------QSVKAHFFLGQCQLEM------ESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (281)
T ss_dssp -CT-------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred -CC-------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH
Confidence 10 0123445555544443 24578899999999999865 3455555433
No 254
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=82.53 E-value=5 Score=47.32 Aligned_cols=118 Identities=14% Similarity=-0.005 Sum_probs=74.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCC---------cHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDAN---------PVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---- 1355 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~---------~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---- 1355 (1874)
.+|....+.+.|..|+.+.+..+...+....... .....-.|..+|..+|+++.|.-.++.+-.. .
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 4566777778888888877766543221100000 0245667888888888888888777654321 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000196 1356 DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1874)
Q Consensus 1356 ~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1874)
..-..+..|.++|+|++|+.+|++.+...++. .+....+-.|+..+|+++.-
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNN---KAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHH
Confidence 11223445788889999999998888654443 34556677788888887644
No 255
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=82.08 E-value=13 Score=37.96 Aligned_cols=126 Identities=10% Similarity=-0.022 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcC--------CCCCCccccc-CCCChHHHHHHHHHHHhcCCcchHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQY--------DPETSHENVR-YHGPPQVMYAYLKYQWSLGEDLKRKEAFAR 1638 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~--------~~~~~~~~~~-~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~ 1638 (1874)
....|...+..+.+.|+++.|.....++... ++.. ++... ....+.+.+..+..+...|+ ..+|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~~~~~---~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGE-PEWVELDRKNIPLYANMSQCYLNIGD---LHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTS-HHHHHHHHTHHHHHHHHHHHHHHHTC---HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCH-HHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHH
Confidence 3678899999999999999999998887765 1110 00000 00123556667777888885 6789998
Q ss_pred HHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch-HHHHH
Q 000196 1639 LQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG-KAWHS 1717 (1874)
Q Consensus 1639 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~-k~w~~ 1717 (1874)
++..+.- .. ..+++++.+|.-...+ ...++.+..|++|++++|+.. .++..
T Consensus 86 ~~~al~~-~p---------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~~ 137 (162)
T 3rkv_A 86 SSEVLKR-EE---------------------TNEKALFRRAKARIAA------WKLDEAEEDLKLLLRNHPAAASVVARE 137 (162)
T ss_dssp HHHHHHH-ST---------------------TCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHhc-CC---------------------cchHHHHHHHHHHHHH------hcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8876642 11 1234555555555444 246788899999999999987 55666
Q ss_pred HHHHHHHH
Q 000196 1718 WALFNTAV 1725 (1874)
Q Consensus 1718 wA~~n~~~ 1725 (1874)
++.....+
T Consensus 138 l~~~~~~~ 145 (162)
T 3rkv_A 138 MKIVTERR 145 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 256
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=82.01 E-value=77 Score=36.22 Aligned_cols=132 Identities=13% Similarity=0.176 Sum_probs=92.9
Q ss_pred cccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHHHHHHHhhhcC--CCcchhHHHHHHHHHHHHhhcCccch----hch
Q 000196 119 FEVKRDREILVLASKVLGHLARAGGAMTADEVEFQVKMALDWLRG--DRVEYRRFAAVLILKEMAENASTVFN----VHV 192 (1874)
Q Consensus 119 l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~~~~~~~~l~~--~~~~~~r~aA~~~l~~la~~~p~~~~----~~l 192 (1874)
.|...|++|....+..+.++-..-....+..++..++..++-+.. +.-...|.+=-.+|+++..+|...+. +++
T Consensus 86 vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f 165 (321)
T 1w9c_A 86 VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF 165 (321)
T ss_dssp CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH
Confidence 344678999999988888886543333445555555555565653 23346888988999999999988654 467
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHH----HHHHHHHHHhhccCC
Q 000196 193 AEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQW----YYRMFEATQDGLGRN 251 (1874)
Q Consensus 193 ~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~----~~~i~~~~~~~l~~~ 251 (1874)
..+++.|.-|.+++...|-+.+.+.+..++..+++ ......++ |..++..+...+.|+
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~-~~~~~~~Fy~~fy~~il~~if~VlTDs 227 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ-EEAAAQSFYQTYFCDILQHIFSVVTDT 227 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 88899999999999999999999988888887764 22333344 445555555556554
No 257
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=81.78 E-value=7.2 Score=44.90 Aligned_cols=118 Identities=12% Similarity=0.107 Sum_probs=80.4
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----------hhhh
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----------DVQL 1359 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----------~~~~ 1359 (1874)
.+|.+....|.+..||..++..+...+ +.+..+..-.++.||-++|++|.|.-+++..+... -.++
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~----~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDE----AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSC----STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCC----CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHH
Confidence 567777778889999999887654221 01345677788999999999999999997543221 1344
Q ss_pred cHHHHH-Hhc--CHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1360 KESWYE-KLQ--RWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1360 ~~~~~E-~lg--~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
.+.|.. ..| ++++|...|++..+..++ +.....++.|+.++|+|+......+
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~----~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPT----WKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS----HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCC----cccHHHHHHHHHHcCCHHHHHHHHH
Confidence 445533 224 799999999987654332 2234556669999999987766554
No 258
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=81.64 E-value=22 Score=39.15 Aligned_cols=129 Identities=13% Similarity=0.091 Sum_probs=74.7
Q ss_pred HHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHH-HHHHHHhhhCCCcchHHHH
Q 000196 73 RISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLAS-KVLGHLARAGGAMTADEVE 151 (1874)
Q Consensus 73 ~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa-~~lg~l~~~~g~~~~~~v~ 151 (1874)
.+.+|.+++.-..|..|+..+....... ....+..+..|+. ..++=++.+..| .++|.+........
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~---~~~~l~~~~~~l~----~~~nWd~~D~~a~~~~g~~~~~~p~~~----- 132 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHI---NETHIPFLEELIV----TKSWWDSVDSIVPTFLGDIFLKHPELI----- 132 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGC---CGGGHHHHHHHHT----SSCCHHHHHHHTTTHHHHHHHHCGGGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc----cCCChHHHHHhhHHHHHHHHHHCHHHH-----
Confidence 3456777654444444444443221111 1112223333333 344566666553 67777766421111
Q ss_pred HHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHH
Q 000196 152 FQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACL 222 (1874)
Q Consensus 152 ~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~ 222 (1874)
.+.+.+|..++..+.+|.|.+..+.. ........+++.+...+.|++.-||.|.+.+|+.+.
T Consensus 133 --~~~l~~W~~s~~~w~rR~ai~~~l~~-------~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~ 194 (232)
T 3jxy_A 133 --SAYIPKWIASDNIWLQRAAILFQLKY-------KQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYA 194 (232)
T ss_dssp --GGTHHHHHHSSCHHHHHHHHHTTTTC-------GGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHhcCCchHHHHHHHHHHHHH-------HhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 23467899888888888886654322 223344566666777889999999999999999875
No 259
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=81.60 E-value=8.9 Score=35.92 Aligned_cols=87 Identities=14% Similarity=0.021 Sum_probs=43.0
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~ 1364 (1874)
.++......+.|..|+.+++...... +......-.+..+|..+|+.+.+.-.++..... .+ ....+..+
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566666677777777666554321 222344445555555555555555544432210 00 01122235
Q ss_pred HHhcCHHHHHHHHHHHHh
Q 000196 1365 EKLQRWDDALKAYTNKAS 1382 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~ 1382 (1874)
.+.|++++|...|++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 555555555555555544
No 260
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=81.27 E-value=13 Score=42.99 Aligned_cols=125 Identities=11% Similarity=0.118 Sum_probs=74.4
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-----------hhhc
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-----------VQLK 1360 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-----------~~~~ 1360 (1874)
+.+-.+.+.|..|+.+.+....-.+..............|..+|.. |+++.+...++.+-.... ....
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 4444555677777777765443211100000112455678888988 999988877664322110 1122
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhccCC-C--chhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000196 1361 ESWYEKLQRWDDALKAYTNKASQASN-P--HIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1874)
Q Consensus 1361 ~~~~E~lg~W~~Al~~y~~~~~~~~~-~--~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1874)
+..|.++|+|++|+.+|++.+...++ + ........+...|+..+|+++.-....+..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34588999999999999998753211 1 111234567778888999998776666553
No 261
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=80.28 E-value=12 Score=34.58 Aligned_cols=87 Identities=17% Similarity=0.035 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCc-chHHhHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD-DSLQDILR 1771 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~-~~~q~~~R 1771 (1874)
..++.+..|.++++.+|+...+|...|...... .-...|+..|-+++...+ . ........
T Consensus 21 ~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~--------------~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~ 81 (112)
T 2kck_A 21 NYTESIDLFEKAIQLDPEESKYWLMKGKALYNL--------------ERYEEAVDCYNYVINVIE-----DEYNKDVWAA 81 (112)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHTSC-----CTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHhCc-----ccchHHHHHH
Confidence 457788999999999999999999888775531 123478889999988752 2 13556677
Q ss_pred HHHHHHhc-CCcHHHHHHHHhcccCCCh
Q 000196 1772 LLTLWFNH-GATEEVQIALQKGFAHVNI 1798 (1874)
Q Consensus 1772 lLtLwf~~-g~~~~v~~~~~~~~~~ip~ 1798 (1874)
+-.+++.. |...+..+.+++.+..-|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 77788888 8888888888887766554
No 262
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=80.23 E-value=11 Score=51.80 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=87.6
Q ss_pred HHHHHHhhhcCC----ChhhhhhHHHHHhHhhcccc----CcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhh
Q 000196 70 LYDRISGLLESN----DAAENLGALRAIDELIDVAL----GENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARA 141 (1874)
Q Consensus 70 l~~~i~~l~~s~----~~~~r~~~i~ai~~li~~~~----~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~ 141 (1874)
+.+.+.++++++ +..-|..++++++.|+.... ......+..+.++|...+. ..|.+-+..+-++||.+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~-~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSD-RAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHh-cCChHHHHHHHHHhhccCCh
Confidence 455566777653 44556789999999976421 1133456778888888886 45788888999999998653
Q ss_pred CCCcchHHHHHHHHHHHhhhcC------CCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhh--cCCchhHHHH
Q 000196 142 GGAMTADEVEFQVKMALDWLRG------DRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVAL--RDPTLAVRER 213 (1874)
Q Consensus 142 ~g~~~~~~v~~~~~~~~~~l~~------~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l--~D~~~~VR~a 213 (1874)
. . ++.+.+++.. +.....|.+|+++|+.++..-|.. +-+.++... ++.+++||-+
T Consensus 471 ~---~-------l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 N---S-------IKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp G---G-------HHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHH
T ss_pred h---H-------HHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHHH
Confidence 1 1 3444455532 223357789999999998665543 334445555 3457899999
Q ss_pred HHHHHH
Q 000196 214 AVEALR 219 (1874)
Q Consensus 214 A~~al~ 219 (1874)
|+..|=
T Consensus 534 A~~~Lm 539 (1056)
T 1lsh_A 534 SCIVFF 539 (1056)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998663
No 263
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=80.03 E-value=6.1 Score=38.32 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRL 1772 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~Rl 1772 (1874)
..++.+..|+++++.+|+...+|+.+|...... .-...|+..|-+++.+. + ........+
T Consensus 32 ~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~-----P-~~~~~~~~l 91 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN--------------EKDGLAIIALNHARMLD-----P-KDIAVHAAL 91 (121)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC-----T-TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhC-----C-CCHHHHHHH
Confidence 357788999999999999999999999876541 12347899999999985 2 234455666
Q ss_pred HHHHHhcCCcHHHHHHHHhcccC
Q 000196 1773 LTLWFNHGATEEVQIALQKGFAH 1795 (1874)
Q Consensus 1773 LtLwf~~g~~~~v~~~~~~~~~~ 1795 (1874)
-.++...|..++....+++.+..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777777766666666665543
No 264
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=79.79 E-value=8.2 Score=40.88 Aligned_cols=126 Identities=11% Similarity=-0.028 Sum_probs=76.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch----h-h-------h
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE----L-D-------V 1357 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~----~-~-------~ 1357 (1874)
.++......+.|..|+.+.+....-.......+........|..+|...|+++.+...+..+... . + .
T Consensus 31 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 110 (203)
T 3gw4_A 31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANA 110 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHH
Confidence 45666677788888888877655321110000111234567889999999999888777643221 0 0 1
Q ss_pred hhcHHHHHHhcCHHHHHHHHHHHHhcc---CCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1358 QLKESWYEKLQRWDDALKAYTNKASQA---SNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1358 ~~~~~~~E~lg~W~~Al~~y~~~~~~~---~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
......+...|+|++|+..|++.+... .++.........+-.++..+|+|+.-....+
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 122335788999999999999977421 1221111223556677888899876655443
No 265
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=79.75 E-value=20 Score=40.95 Aligned_cols=86 Identities=8% Similarity=-0.006 Sum_probs=48.1
Q ss_pred HHHHHHhhcCChHHHhHHHHHHhc----hh-------hhhhcHHHHHHhcCHHHHHHHHHHHHh---ccCCCchh-HHhH
Q 000196 1330 ALIHINNQLHQHEAAVGILTYAQK----EL-------DVQLKESWYEKLQRWDDALKAYTNKAS---QASNPHIV-LEAT 1394 (1874)
Q Consensus 1330 ~L~~iy~~L~~~D~~~Gi~~~~~~----~~-------~~~~~~~~~E~lg~W~~Al~~y~~~~~---~~~~~~~~-~~~~ 1394 (1874)
.+..+|...|+++.+...+..+-. .. -....+..|...|+|++|+.+|++.+. ..++.... ....
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~ 199 (293)
T 2qfc_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 345556666666666555443211 00 011123457778888888888888762 22222111 1344
Q ss_pred hhHhHHHHHhhCHHHHHHHHh
Q 000196 1395 LGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1395 ~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
..+-.|+..+|+|+.-..+.+
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~ 220 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HhHHHHHHHHhhHHHHHHHHH
Confidence 566777888888876665554
No 266
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=79.46 E-value=10 Score=39.29 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=45.8
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHH-HhhcCCh--HHHhHHHHHHhch-h---h-hhhcH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHI-NNQLHQH--EAAVGILTYAQKE-L---D-VQLKE 1361 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~i-y~~L~~~--D~~~Gi~~~~~~~-~---~-~~~~~ 1361 (1874)
.+|.+....+.|..|+.+++...... ++.......+..+ |...|+. +.+...+...... . . ....+
T Consensus 49 ~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 122 (177)
T 2e2e_A 49 LLGEYYLWQNDYSNSLLAYRQALQLR------GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 44555556666666666665554321 1223444555555 6666665 5555554432210 0 0 11223
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcc
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQA 1384 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~~ 1384 (1874)
..|.+.|+|++|...|++.+...
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcccHHHHHHHHHHHHhhC
Confidence 34666667777777776666543
No 267
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=79.35 E-value=16 Score=37.69 Aligned_cols=111 Identities=11% Similarity=0.059 Sum_probs=76.6
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKY-QWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~-lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
++...|..++.+....|+++.|...+.++...+|. .+.+.+..+.. ....|+.. ..+|+..++..+..
T Consensus 42 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~l~~~~~~~~-~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE----------NAELYAALATVLYYQASQHM-TAQTRAMIDKALAL 110 (177)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS----------CHHHHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHh
Confidence 45788999999999999999999999998876552 36677778888 55667410 16899988887653
Q ss_pred hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHH
Q 000196 1646 LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWH 1716 (1874)
Q Consensus 1646 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~ 1716 (1874)
... ...++..+|...... ...++....|+++++.+|+....+.
T Consensus 111 ~p~----------------------~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 111 DSN----------------------EITALMLLASDAFMQ------ANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp CTT----------------------CHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred CCC----------------------cHHHHHHHHHHHHHc------ccHHHHHHHHHHHHhhCCCCccHHH
Confidence 210 022344444444333 2457788999999999997755443
No 268
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=79.15 E-value=6 Score=47.37 Aligned_cols=23 Identities=13% Similarity=0.082 Sum_probs=14.5
Q ss_pred HHHHHHHhccchhhhhhhccchh
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEF 1312 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~ 1312 (1874)
.+|....+.+.|..|+.+.+...
T Consensus 228 ~~g~~~~~~g~~~~Ai~~y~kAl 250 (370)
T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVL 250 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 45666666677777776665544
No 269
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=78.94 E-value=4.5 Score=37.68 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=28.9
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHh-hCHHHHHHHHh
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAAL-ARWEELNNLCK 1415 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~L-g~w~~l~~~~~ 1415 (1874)
+.+.|+|++|+.+|++.+...++... .+....+-.|+..+ |+|+.-....+
T Consensus 50 ~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 50 LYNLERYEEAVDCYNYVINVIEDEYN-KDVWAAKADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSCCTTC-HHHHHHHHHHHTTCSSCSHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCcccch-HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 55666777777777666654333001 33445566666677 77665554444
No 270
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=78.93 E-value=27 Score=35.42 Aligned_cols=117 Identities=9% Similarity=-0.056 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~ 1692 (1874)
.....+.+..++..|+ ..+|+..++..+.-+......... . .+.........+.++..+|.-...+ .
T Consensus 11 a~~~~~~G~~~~~~~~---~~~A~~~y~~al~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~nla~~~~~~------~ 77 (162)
T 3rkv_A 11 VEALRQKGNELFVQKD---YKEAIDAYRDALTRLDTLILREKP-G---EPEWVELDRKNIPLYANMSQCYLNI------G 77 (162)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSCT-T---SHHHHHHHHTHHHHHHHHHHHHHHH------T
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcccCCC-C---HHHHHHHHHHHHHHHHHHHHHHHhc------C
Confidence 3455677788888885 688999888866542210000000 0 0000000222333444444433333 2
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
..++.+..|.+|++++|++.++|+..|..+... .-...|+..|-+++.+.
T Consensus 78 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~--------------g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 78 DLHEAEETSSEVLKREETNEKALFRRAKARIAA--------------WKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH--------------hcHHHHHHHHHHHHhcC
Confidence 346788999999999999999999999886642 12347899999999885
No 271
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=78.83 E-value=56 Score=38.64 Aligned_cols=198 Identities=11% Similarity=0.137 Sum_probs=114.3
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCcc---
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCER--- 675 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~--- 675 (1874)
.++..|+..+..+++.-|...-.+|.++-..... .-+++|+.+.+.+...-+......--.+.++.+|.++.....
T Consensus 129 ~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~-~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLk 207 (403)
T 3fga_B 129 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 207 (403)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCch
Confidence 4666777888889999999888888887655432 236667766665555434311112234677888888865321
Q ss_pred ------------------ccccchHHHHHHHHHHhhccCCCCCChhHHH-------------------HHHHHHHHHHHh
Q 000196 676 ------------------LIRPYIAPIHKALVARLLEGTGINANNGIIS-------------------GVLVTVGDLARV 718 (1874)
Q Consensus 676 ------------------~~~py~~~il~~ll~~l~~~~~~~~~~~v~~-------------------~~~~~l~~La~~ 718 (1874)
.+..|-+++...+.+.+..+ +.+.. ..+.=++++.+.
T Consensus 208 eehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD------p~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~ 281 (403)
T 3fga_B 208 EEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD------STLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDV 281 (403)
T ss_dssp HHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC------GGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC------chhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHh
Confidence 12234455666666655432 22221 122334445554
Q ss_pred cc-cchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHH-----HHHhhccccccccccchHHHHHHHHHhcCCCCHHHHH
Q 000196 719 GG-FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLG-----QVVQSTGYVITPYNEYPQLLGLLLKMLNGELVWSTRR 792 (1874)
Q Consensus 719 ~g-~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg-----~l~~~~~~~i~p~~~~p~ll~~Ll~~l~~~~~~~vr~ 792 (1874)
.+ .++.+....++..+..++... +..+-+.|+.-.. .++... .-..+|-+++.|.+..++.=+..+|.
T Consensus 282 ~~~~~f~~i~~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n-----~~~IlPii~p~L~~~~~~HWn~~v~~ 355 (403)
T 3fga_B 282 IEPSEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDN-----AAKILPIMFPSLYRNSKTHWNKTIHG 355 (403)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTT-----HHHHHHHHHHHHHHTTSCCSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 44 467777777788877887755 4555555543321 111111 11123445555555444444789999
Q ss_pred HHHHHHHHhcccCccch
Q 000196 793 EVLKVLGIMGALDPHAH 809 (1874)
Q Consensus 793 ~al~~lg~lgaldp~~~ 809 (1874)
.+..++..+.-+||..+
T Consensus 356 l~~~vlk~l~e~d~~lF 372 (403)
T 3fga_B 356 LIYNALKLFMEMNQKLF 372 (403)
T ss_dssp HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHhCHHHH
Confidence 99999999888887643
No 272
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=78.57 E-value=22 Score=44.37 Aligned_cols=92 Identities=7% Similarity=-0.054 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHhhcCChHHHhHHHHHHhch---hh---hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhH
Q 000196 1324 PVAVVEALIHINNQLHQHEAAVGILTYAQKE---LD---VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGR 1397 (1874)
Q Consensus 1324 ~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~---~~---~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~ 1397 (1874)
+..++..|+..|.+.|+.|.|..+++..... ++ ....-..|-+.|++++|.+.|++-....-.|+ ......+
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd--~~ty~~L 181 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE--EPELAAL 181 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC--HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC--HHHHHHH
Confidence 3567889999999999999999999865431 11 11222348899999999999998766554554 2456789
Q ss_pred hHHHHHhhCHHHHHHHHhhh
Q 000196 1398 MRCLAALARWEELNNLCKEY 1417 (1874)
Q Consensus 1398 m~cl~~Lg~w~~l~~~~~~~ 1417 (1874)
|+++.+.|+++....+.+.+
T Consensus 182 i~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHH
Confidence 99999999998887776653
No 273
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=78.22 E-value=14 Score=36.02 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=22.7
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHH
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEEL 1410 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l 1410 (1874)
+.++|+|++|+..|++.+...++. ......+-.|+..+|+|+.-
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A 96 (137)
T 3q49_B 53 YLKMQQPEQALADCRRALELDGQS---VKAHFFLGQCQLEMESYDEA 96 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCchh---HHHHHHHHHHHHHHhhHHHH
Confidence 455666666666666555433221 23344455555555555443
No 274
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=77.74 E-value=12 Score=38.81 Aligned_cols=148 Identities=14% Similarity=-0.016 Sum_probs=87.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchhh-hhh---cH-HHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKELD-VQL---KE-SWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~~-~~~---~~-~~~ 1364 (1874)
.++....+-|.|..|+.+++...... ++.....-.|..+|...|+++.+...++....... ... .. ..+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL------QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 55677778888999998887766432 33456777889999999999999887765322110 000 00 001
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHH-HhHHHHHHHHHHHcCCh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWTPAEPAAR-LEMAPMAANAAWNMGEW 1443 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~-~~~~~~~a~aaw~l~~W 1443 (1874)
...+...+|+..|++.+...++. .+....+-.|+..+|+++.-....+..... +|... .......+.+...+|++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDN---FELACELAVQYNQVGRDEEALELLWNILKV-NLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HhhcccchHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccChHHHHHHHHHHHHHhCCC
Confidence 11122345788888888655443 456677788899999998766655543221 11110 01112334566667776
Q ss_pred hhHH
Q 000196 1444 DQMA 1447 (1874)
Q Consensus 1444 d~~~ 1447 (1874)
+.-.
T Consensus 161 ~~A~ 164 (176)
T 2r5s_A 161 NAIA 164 (176)
T ss_dssp CHHH
T ss_pred CcHH
Confidence 6533
No 275
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=77.29 E-value=10 Score=43.36 Aligned_cols=117 Identities=11% Similarity=-0.018 Sum_probs=73.3
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hhh----hhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LDV----QLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~~----~~~~~~~ 1364 (1874)
.++....+-|.+..|+.+++...... ++.....-.|..+|...|++|.+...++..... .+. -.....+
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLS------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 45666667777888887777665432 334566677888888888888888777643211 000 0111124
Q ss_pred HHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1365 EKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
.+.|++++|++.|++.+...++. .+....+-.+|...|+++.-.....
T Consensus 196 ~~~~~~~~a~~~l~~al~~~P~~---~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 196 LXQAADTPEIQQLQQQVAENPED---AALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp HHHHTSCHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhcccCccHHHHHHHHhcCCcc---HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 55667777888888877654433 4556677778888888865554444
No 276
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=76.75 E-value=73 Score=37.57 Aligned_cols=146 Identities=10% Similarity=0.015 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...+..++.+....|++..|...+.++....+....... .........+......|+ ..+|+..+++.+.-...
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~~lg~~y~~~~~---~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI---RTIQSLFVIAGNYDDFKH---YDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH---HHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh---hHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHH
Confidence 567778888999999999999998887764322110000 012334455666777784 68899998886653321
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHh-----hcccchHHHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQ-----CATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~-----~~~~~~k~w~~wA~~n~ 1723 (1874)
..+....+.++.-+|.-.... ...++.+.+|++|++ .+|....+++.+|..+.
T Consensus 215 ----------------~~~~~~~~~~~~~lg~~y~~~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 215 ----------------IQNDRFIAISLLNIANSYDRS------GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHH------TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred ----------------cCCHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 122345666777777665554 346889999999998 56666777777777655
Q ss_pred HHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1724 AVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1724 ~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.. + -...|+..|-+++.+.
T Consensus 273 ~~-------g-------~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 273 KA-------G-------QTQKAFQFIEEGLDHI 291 (378)
T ss_dssp HT-------T-------CHHHHHHHHHHHHHHC
T ss_pred HC-------C-------CHHHHHHHHHHHHHHH
Confidence 31 1 2246788888888875
No 277
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=76.51 E-value=30 Score=36.77 Aligned_cols=124 Identities=8% Similarity=0.024 Sum_probs=85.4
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhc
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELS 1647 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~ 1647 (1874)
+...|...+.+..+.|+++.|...+.++...+|. .+...+..+..+...|+ ..+|+..++..+....
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~~ 102 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH----------LAVAYFQRGMLYYQTEK---YDLAIKDLKEALIQLR 102 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----------chHHHHHHHHHHHHccc---HHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999998877652 36777888888888885 6899999998775432
Q ss_pred CCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHH
Q 000196 1648 SCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWH 1716 (1874)
Q Consensus 1648 ~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~ 1716 (1874)
...... ............+.++..+|...... ...++....|+++.+++|+......
T Consensus 103 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~ 159 (213)
T 1hh8_A 103 GNQLID------YKILGLQFKLFACEVLYNIAFMYAKK------EEWKKAEEQLALATSMKSEPRHSKI 159 (213)
T ss_dssp TCSEEE------CGGGTBCCEEEHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred CccHHH------HHHhccccCccchHHHHHHHHHHHHc------cCHHHHHHHHHHHHHcCcccccchH
Confidence 211000 00000011223456666666666554 3568899999999999997654433
No 278
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=76.48 E-value=12 Score=35.95 Aligned_cols=15 Identities=7% Similarity=0.116 Sum_probs=6.0
Q ss_pred hcCHHHHHHHHHHHH
Q 000196 1367 LQRWDDALKAYTNKA 1381 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~ 1381 (1874)
.|+|++|+..|++.+
T Consensus 52 ~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 52 TRNFQLAEAQFRDLV 66 (129)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 344444444444333
No 279
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=75.74 E-value=19 Score=36.73 Aligned_cols=121 Identities=8% Similarity=-0.014 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC---ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG---PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~---~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
....|+.......+.|+++.|.....+++.++|...... .... ......-.+..+...|+ ..+|+...+..+.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-a~~~~~~~a~a~~n~g~al~~Lgr---~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-AFDHAGFDAFCHAGLAEALAGLRS---FDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-CCCHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-hhhhccchHHHHHHHHHHHHHCCC---HHHHHHHHHHHHH
Confidence 367899999999999999999999999998877521000 0000 01245556666777784 6899999888765
Q ss_pred HhcCCCccccccccccccccCcchhhHHHHH----HHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchH
Q 000196 1645 ELSSCPVIQSAASTSLTTATSTNVPLIARVY----LKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGK 1713 (1874)
Q Consensus 1645 ~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~----~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k 1713 (1874)
-++.. .+-.+-.++.+ +.+|.=+..+ ...++.+..|++|++++|+..-
T Consensus 86 l~n~~---------------~e~~pd~~~A~~~~~~~rG~aL~~l------gr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 86 YFNRR---------------GELNQDEGKLWISAVYSRALALDGL------GRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHH---------------CCTTSTHHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHCCS
T ss_pred hhhcc---------------ccCCCchHHHHHHHHHhHHHHHHHC------CCHHHHHHHHHHHHhcCCCcHH
Confidence 32210 00011234555 8888887766 4689999999999999996543
No 280
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.81 E-value=15 Score=36.28 Aligned_cols=88 Identities=19% Similarity=0.114 Sum_probs=45.5
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCc---HHHHHHHHHHHhhcCChHHHhHHHHHHhch-h---h-hhhcH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANP---VAVVEALIHINNQLHQHEAAVGILTYAQKE-L---D-VQLKE 1361 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~---~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---~-~~~~~ 1361 (1874)
.++....+.+.|..|+-+++...... ++. ......+..+|..+++.+.+.-.++..... . . .....
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGLD------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHc------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 45666677777888887777665421 222 234445555666666666555554432211 0 0 01122
Q ss_pred HHHHHhcCHHHHHHHHHHHHhc
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~ 1383 (1874)
..|.+.|+|++|..+|++.+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 2355566666666666655543
No 281
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=74.56 E-value=37 Score=41.56 Aligned_cols=153 Identities=8% Similarity=-0.017 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHH---HHHHH
Q 000196 1547 RNVEVWQALLAVRALVLPPTEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYA---YLKYQ 1623 (1874)
Q Consensus 1547 ~~~~~w~~iL~~R~~vl~~~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e---~~k~l 1623 (1874)
......+.-+..+.-..+.......+-.++.+....|+++.|...+.++..+.+..... ...|..... .+.+.
T Consensus 29 ~~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~----~~~~~~~~~~~nla~~y 104 (472)
T 4g1t_A 29 NSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD----QAEIRSLVTWGNYAWVY 104 (472)
T ss_dssp CCHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG----GCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc----ccchHHHHHHHHHHHHH
Confidence 34444555444444444444446677788999999999999999998876542211000 012333332 34455
Q ss_pred HhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHH
Q 000196 1624 WSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRN 1703 (1874)
Q Consensus 1624 w~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~ 1703 (1874)
...|+ ..+|+..+++.+.-.....+ ......+.++..+|.=..... ....++.+..|++
T Consensus 105 ~~~g~---~~~A~~~~~ka~~i~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~----~~~y~~A~~~~~k 163 (472)
T 4g1t_A 105 YHMGR---LSDVQIYVDKVKHVCEKFSS--------------PYRIESPELDCEEGWTRLKCG----GNQNERAKVCFEK 163 (472)
T ss_dssp HHTTC---HHHHHHHHHHHHHHHHHSCC--------------SSCCCCHHHHHHHHHHHHHHC----TTHHHHHHHHHHH
T ss_pred HHcCC---hHHHHHHHHHHHHHhHhccc--------------ccchhhHHHHHHHHHHHHHHc----cccHHHHHHHHHH
Confidence 57784 68899888876542211100 001112344444443222221 2346889999999
Q ss_pred HHhhcccchHHHHHHHHHHHH
Q 000196 1704 ATQCATKWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1704 a~~~~~~~~k~w~~wA~~n~~ 1724 (1874)
|++++|+...+|..+|.....
T Consensus 164 al~~~p~~~~~~~~~~~~~~~ 184 (472)
T 4g1t_A 164 ALEKKPKNPEFTSGLAIASYR 184 (472)
T ss_dssp HHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999988877554
No 282
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=73.91 E-value=9.5 Score=47.15 Aligned_cols=117 Identities=12% Similarity=-0.023 Sum_probs=65.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccC-C--------CCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRM-D--------ANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L---- 1355 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~-~--------~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~---- 1355 (1874)
.+|....+.+.|..|+.+.+..+...+.... . +......-.|..+|.++++++.|.-.+..+-.. .
T Consensus 273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 352 (457)
T 1kt0_A 273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK 352 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH
Confidence 4566677777788888777665542211000 0 000244556777777888887777666543211 0
Q ss_pred hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHH
Q 000196 1356 DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEE 1409 (1874)
Q Consensus 1356 ~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~ 1409 (1874)
..-..+..|.++|+|++|+..|++.+...++. .+....+-+|+..+|+++.
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~---~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN---KAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHHH
Confidence 01123345777888888888888777543332 2344556667777777654
No 283
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=73.90 E-value=23 Score=44.20 Aligned_cols=155 Identities=8% Similarity=-0.001 Sum_probs=98.8
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCCh---------HHHhHHHHHHhch------hh
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQH---------EAAVGILTYAQKE------LD 1356 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~---------D~~~Gi~~~~~~~------~~ 1356 (1874)
...+-|+|....|+..++.-.... . .....++..|+..|..-+.. +.+..++...... ..
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~G----v-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNG----V-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHT----C-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcC----C-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 345567788888887775433221 1 12346778899988876653 4455566543211 11
Q ss_pred hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhhcC-CCChHHHHhHHHHHHH
Q 000196 1357 VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEYWT-PAEPAARLEMAPMAAN 1435 (1874)
Q Consensus 1357 ~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~-~~~~~~~~~~~~~~a~ 1435 (1874)
.+..-..|-+.|+|++|++.|++-....-.|+ ......+|.++...|+++......+.+-. ...|+.. .-.....
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~--ty~~Li~ 183 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR--LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP--ELAALLK 183 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH--HHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHH
Confidence 12222348899999999999988655443444 34567899999999999887777665421 1122221 2234567
Q ss_pred HHHHcCChhhHHHHHhhcCC
Q 000196 1436 AAWNMGEWDQMAEYVSRLDD 1455 (1874)
Q Consensus 1436 aaw~l~~Wd~~~~~~~~~~~ 1455 (1874)
+.-+.|++|...++++.|..
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHH
Confidence 88899999999999998853
No 284
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=72.37 E-value=8.9 Score=43.77 Aligned_cols=88 Identities=11% Similarity=-0.032 Sum_probs=53.9
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHH
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWY 1364 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~ 1364 (1874)
.+|....+.+.|..|+-+++...... ++.....-.+..+|..+|+++.+...++.+... . .....+..|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRN------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45666677777888887776655432 233455666777777777777777666643321 0 011223346
Q ss_pred HHhcCHHHHHHHHHHHHhc
Q 000196 1365 EKLQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~ 1383 (1874)
.++|+|++|+..|++.+..
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777776643
No 285
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=71.57 E-value=8.1 Score=36.66 Aligned_cols=61 Identities=13% Similarity=-0.017 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-hh----hhhcHHHHHHhcCHHHHHHHHHHHHhc
Q 000196 1323 NPVAVVEALIHINNQLHQHEAAVGILTYAQKE-LD----VQLKESWYEKLQRWDDALKAYTNKASQ 1383 (1874)
Q Consensus 1323 ~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~~----~~~~~~~~E~lg~W~~Al~~y~~~~~~ 1383 (1874)
+.....-.|..+|...|+++.+...++.+-.. .+ ....+..|.+.|+|++|...|++.+..
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34566677888888888888888777654321 11 112334578888999999998887653
No 286
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=71.56 E-value=4.4 Score=50.52 Aligned_cols=89 Identities=12% Similarity=0.029 Sum_probs=55.9
Q ss_pred HHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhch-h----hhhhcHHHHHH
Q 000196 1292 GALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKE-L----DVQLKESWYEK 1366 (1874)
Q Consensus 1292 ~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~-~----~~~~~~~~~E~ 1366 (1874)
|....+-+.|.+|+.+.+..+... +........|..+|.++|+.+.|...++.+-.. . .....+..|.+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334455677788887777665432 233566677788888888888877776654321 1 01123345777
Q ss_pred hcCHHHHHHHHHHHHhccCC
Q 000196 1367 LQRWDDALKAYTNKASQASN 1386 (1874)
Q Consensus 1367 lg~W~~Al~~y~~~~~~~~~ 1386 (1874)
+|+|++|++.|++.++..++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~ 106 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPH 106 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTT
T ss_pred cCCHHHHHHHHHHHHHhCCC
Confidence 88888888888887765433
No 287
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=70.83 E-value=1.7e+02 Score=34.46 Aligned_cols=128 Identities=14% Similarity=0.249 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhh
Q 000196 169 RRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDG 247 (1874)
Q Consensus 169 ~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~ 247 (1874)
.|...+.=.++|+-+ .|.+ +++|++.|+..-.|++..||.-.++-+...+. +. .++...+++.+..-
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsL----l~~fl~~il~f~~d~~~~vRk~~a~FieEa~~----~~----~el~~~~l~~L~~L 108 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTL----LDNFLDEIIAFQADKSIEVRKFVIGFIEEACK----RD----IELLLKLIANLNML 108 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGG----GGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH----HC----GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHH----HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHH
Confidence 466666666776554 5654 45777777777789999999988887766543 11 22345566655555
Q ss_pred ccCCCChhHHHHHHHHHHHHH----H----cch-----hhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHh
Q 000196 248 LGRNAPVHSIHGSLLAVGELL----R----NTG-----EFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIA 309 (1874)
Q Consensus 248 l~~~~~~~~~~~al~~l~~ll----~----~~~-----~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la 309 (1874)
+.+. +..+...++.+...+- + +.+ +.....+..+-..++...++.+..||-.++..+-.+.
T Consensus 109 L~d~-d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 109 LRDE-NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HTCS-SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 5554 3455666665544442 2 111 2455566667778888888899999988876666543
No 288
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=69.62 E-value=73 Score=35.35 Aligned_cols=123 Identities=14% Similarity=0.208 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHHhh-cCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHh
Q 000196 168 YRRFAAVLILKEMAEN-ASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQD 246 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~-~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~ 246 (1874)
..|...+.=.++++-+ .|. .+++|++.++....|++..||.-.++-+...+. . ..+....+++.+..
T Consensus 30 ~~kl~~L~qa~el~~~~dp~----ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~----~----k~~l~~~~l~~L~~ 97 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE----LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK----V----KVELLPHVINVVSM 97 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG----GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH----H----CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHh----HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHH
Confidence 4667766666776655 554 456777777776789999999988877765542 1 12345566666665
Q ss_pred hccCCCChhHHHHHHHHHHHH----HH----cch-----hhhHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 000196 247 GLGRNAPVHSIHGSLLAVGEL----LR----NTG-----EFMMSRYREVAEIVLRYLEHRDRLVRLSITS 303 (1874)
Q Consensus 247 ~l~~~~~~~~~~~al~~l~~l----l~----~~~-----~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~ 303 (1874)
-+.+. +..+...++.+...+ ++ ..+ +.....+.++=..++...++.+..||-.++.
T Consensus 98 Ll~d~-d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iK 166 (257)
T 3gs3_A 98 LLRDN-SAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIK 166 (257)
T ss_dssp HTTCS-CHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHH
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHH
Confidence 56654 355566666655444 33 111 2344555555567777778888888877663
No 289
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=69.57 E-value=71 Score=31.32 Aligned_cols=140 Identities=13% Similarity=0.018 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCC
Q 000196 1614 QVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDES 1693 (1874)
Q Consensus 1614 ~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~ 1693 (1874)
.+....+...+..|+ ..+|+..+++.+..... ..+....+.++..+|.-.... ..
T Consensus 10 ~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~l~~~~~~~------g~ 64 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGN---FRDAVIAHEQRLLIAKE----------------FGDKAAERIAYSNLGNAYIFL------GE 64 (164)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH----------------HTCHHHHHHHHHHHHHHHHHT------TC
T ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHH----------------hCCchHHHHHHHHHHHHHHHc------CC
Confidence 445667778888885 67899998886653321 122345667777777776654 35
Q ss_pred HHHHHHHHHHHHhhcccc------hHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHH
Q 000196 1694 IPEIIAAYRNATQCATKW------GKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQ 1767 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q 1767 (1874)
.++.+..|+++.++.++. ..+|+.+|..+.. .+ -...|++.|-+++.+............
T Consensus 65 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~-------~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 65 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-------LQ-------DYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TT-------CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-------Hh-------hHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 788999999998876643 3344445544332 11 123566666666665321111111122
Q ss_pred hHHHHHHHHHhcCCcHHHHHHHHhc
Q 000196 1768 DILRLLTLWFNHGATEEVQIALQKG 1792 (1874)
Q Consensus 1768 ~~~RlLtLwf~~g~~~~v~~~~~~~ 1792 (1874)
....+-.+.+..|+..+....+++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3344455556667766555555444
No 290
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=69.55 E-value=1.3e+02 Score=36.11 Aligned_cols=202 Identities=11% Similarity=0.160 Sum_probs=113.6
Q ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc---
Q 000196 598 ADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE--- 674 (1874)
Q Consensus 598 ~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~--- 674 (1874)
..++..|+..+..+++.-|...-.+|.++-..... ..+++|+.+...+...-+......--.+.++.+|.++....
T Consensus 161 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PL 239 (449)
T 2npp_B 161 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 239 (449)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTT-THHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 35777788888889999999998999887665432 35777777766555443331111223467788888875432
Q ss_pred ------------------cccccchHHHHHHHHHHhhccCCCCCChhHH---------------HHHHHHHHHHHHhcc-
Q 000196 675 ------------------RLIRPYIAPIHKALVARLLEGTGINANNGII---------------SGVLVTVGDLARVGG- 720 (1874)
Q Consensus 675 ------------------~~~~py~~~il~~ll~~l~~~~~~~~~~~v~---------------~~~~~~l~~La~~~g- 720 (1874)
+.+.-|-+++...+.+.+..+. .....+. ...+.-+.++.+..+
T Consensus 240 Keehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp--~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~ 317 (449)
T 2npp_B 240 KEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS--TLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEP 317 (449)
T ss_dssp CHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCG--GGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCH
T ss_pred cHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCc--HhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCH
Confidence 1122344555555555554320 0011111 112233344444443
Q ss_pred cchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHH--HHHhhccccccccccchHHHHHHHHHh----cCCCCHHHHHHH
Q 000196 721 FGMRQYISELMPLIVEALLDGAAVTKREVAVSTLG--QVVQSTGYVITPYNEYPQLLGLLLKML----NGELVWSTRREV 794 (1874)
Q Consensus 721 ~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg--~l~~~~~~~i~p~~~~p~ll~~Ll~~l----~~~~~~~vr~~a 794 (1874)
.++.+....++..+..++... +..+-+.|+.... .+..- +..+ ...+++.+...| ++.=+..+|..+
T Consensus 318 ~ef~~i~~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~l----i~~n--~~~IlPii~p~L~~~s~~HWn~~V~~la 390 (449)
T 2npp_B 318 SEFVKIMEPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSL----ISDN--AAKILPIMFPSLYRNSKTHWNKTIHGLI 390 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHH----HHTT--HHHHHHHHHHHHTSCTTCCSSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHH----HHhc--hhhhHHhhHHHHHHHHHHhcCHHHHHHH
Confidence 467777777888888888754 4455555543322 11100 1111 123556666555 222256799999
Q ss_pred HHHHHHhcccCccch
Q 000196 795 LKVLGIMGALDPHAH 809 (1874)
Q Consensus 795 l~~lg~lgaldp~~~ 809 (1874)
..++..+.-+||..+
T Consensus 391 ~~vlk~l~e~d~~lf 405 (449)
T 2npp_B 391 YNALKLFMEMNQKLF 405 (449)
T ss_dssp HHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCHHHH
Confidence 999999888888654
No 291
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=67.75 E-value=5 Score=50.00 Aligned_cols=111 Identities=10% Similarity=-0.063 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000196 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1874)
Q Consensus 1570 ~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~ 1649 (1874)
..|...+..+.+.|+++.|...+.++...+|. .+.+....+..+..+|+ ..+|+..+++.+.. .
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l-~-- 70 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPS----------NAIYYGNRSLAYLRTEC---YGYALGDATRAIEL-D-- 70 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHS-C--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc----------cHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHh-C--
Confidence 34455566778899999999999999887653 36777888889999995 68999998886642 1
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
++ ....-..+|.+|..+|+ .++.++.|++|++.+|+...+|..++..
T Consensus 71 p~------------~~~~~~~lg~~~~~~g~-------------~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 71 KK------------YIKGYYRRAASNMALGK-------------FRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp TT------------CHHHHHHHHHHHHHHTC-------------HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred CC------------CHHHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 00 00011224555554444 4778899999999999998899888765
No 292
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=67.75 E-value=21 Score=31.57 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1566 TEDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1566 ~e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
..+...|...+....+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..+++.+.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~l~~~~~~~~~---~~~A~~~~~~a~~ 71 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN----------NAEAWYNLGNAYYKQGD---YDEAIEYYQKALE 71 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHHhh---HHHHHHHHHHHHh
Confidence 345778999999999999999999999998876542 36777888888888885 6889999988765
No 293
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=66.67 E-value=11 Score=34.72 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=25.7
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHH
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNN 1412 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~ 1412 (1874)
|.+.|+|++|+..|++.+...++. ......+-.|+..+|+|+.-..
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHH
Confidence 555666666666666666543332 2334455566666666654443
No 294
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=66.58 E-value=20 Score=32.99 Aligned_cols=65 Identities=22% Similarity=0.136 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
++...|..++.+..+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..+++.+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD----------YVGTYYHLGKLYERLDR---TDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----------CTHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHh
Confidence 45788999999999999999999999999887663 35677888999999995 6889999887664
No 295
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=66.04 E-value=56 Score=28.49 Aligned_cols=80 Identities=16% Similarity=0.111 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~ 1692 (1874)
+...+..+...+..|+ ..+|+..+++.+..... ....+..+|...... .
T Consensus 9 ~~~~~~la~~~~~~~~---~~~A~~~~~~a~~~~~~----------------------~~~~~~~l~~~~~~~------~ 57 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPN----------------------NAEAWYNLGNAYYKQ------G 57 (91)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTT----------------------CHHHHHHHHHHHHHT------T
T ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCC----------------------CHHHHHHHHHHHHHH------h
Confidence 4566777888888885 68899998887653110 123344555544443 3
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
..++.+..|+++++.+|+...+|..+|....
T Consensus 58 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 58 DYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999998887654
No 296
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.18 E-value=29 Score=42.03 Aligned_cols=159 Identities=8% Similarity=-0.029 Sum_probs=87.9
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----------h-hh
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----------D-VQ 1358 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----------~-~~ 1358 (1874)
.|+.+..+-|.|..|+-+.+....-................+-.++...|+.|.+.-+.+...... . ..
T Consensus 60 ~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (434)
T 4b4t_Q 60 ELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI 139 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 456667777778888766654432111000000001123345667777888887776665322100 0 11
Q ss_pred hcHHHHHHhcCHHHHHHHHHHHHhccC---CCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh---c--CCCChHHHHhHH
Q 000196 1359 LKESWYEKLQRWDDALKAYTNKASQAS---NPHIVLEATLGRMRCLAALARWEELNNLCKEY---W--TPAEPAARLEMA 1430 (1874)
Q Consensus 1359 ~~~~~~E~lg~W~~Al~~y~~~~~~~~---~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~---~--~~~~~~~~~~~~ 1430 (1874)
..+..|+..|+|++|+..|++.+.... +.....+.....++++..+|+|+......+.. . ....+..+..+.
T Consensus 140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 219 (434)
T 4b4t_Q 140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELD 219 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHH
Confidence 234568999999999999998765422 22223567788999999999998776554321 0 011222223333
Q ss_pred HHHHHHHHHcCChhhHHH
Q 000196 1431 PMAANAAWNMGEWDQMAE 1448 (1874)
Q Consensus 1431 ~~~a~aaw~l~~Wd~~~~ 1448 (1874)
.......+..|+|+....
T Consensus 220 ~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 220 LMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 333444455566666544
No 297
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=65.15 E-value=1.1e+02 Score=34.43 Aligned_cols=141 Identities=12% Similarity=-0.015 Sum_probs=92.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCcccc
Q 000196 1575 FASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQS 1654 (1874)
Q Consensus 1575 ~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~ 1654 (1874)
++....+.|+++.|...+.+++.......+ . .....+....+.+....|+ ..+|+..+++.+......
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~--~--~~~~~~~~~lg~~y~~~g~---~~~A~~~~~~al~~~~~~----- 188 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGID--V--YQNLYIENAIANIYAENGY---LKKGIDLFEQILKQLEAL----- 188 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSC--T--THHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhccccc--H--HHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhc-----
Confidence 566667778999999999998875332110 0 0011234445556667774 688999999877644311
Q ss_pred ccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccc------hHHHHHHHHHHHHHHHh
Q 000196 1655 AASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKW------GKAWHSWALFNTAVMSH 1728 (1874)
Q Consensus 1655 ~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n~~~~~~ 1728 (1874)
..+....+.++.-+|....+. ...++.+..|.+|+++.++. ..+|+..|......
T Consensus 189 ----------~~~~~~~~~~~~nlg~~y~~~------~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~--- 249 (293)
T 3u3w_A 189 ----------HDNEEFDVKVRYNHAKALYLD------SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL--- 249 (293)
T ss_dssp ----------SCCHHHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT---
T ss_pred ----------ccchhHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh---
Confidence 123456778888888887765 46789999999999887654 56777777665431
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1729 YTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1729 ~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.+....|++.|-+|+.+.
T Consensus 250 ----------g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 250 ----------EYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp ----------TCCHHHHHHHHHHHHHHH
T ss_pred ----------CCcHHHHHHHHHHHHHHH
Confidence 123346788888877764
No 298
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=63.02 E-value=1.3e+02 Score=35.37 Aligned_cols=196 Identities=13% Similarity=0.143 Sum_probs=97.2
Q ss_pred hChHHHHHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHH-HHHHHhhcccCCChHHHHHHHHHH
Q 000196 58 LGGEAFSRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVALGENASKVSKF-SNYMRTVFEVKRDREILVLASKVL 135 (1874)
Q Consensus 58 ~~~~~~~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~-~~~L~~~l~~~~d~~v~~~aa~~l 135 (1874)
.++....+|++. +..++.+++.|+|+++|..--..+-.+.+...+ ....+++- .+.+.+.+-......-....-+.+
T Consensus 162 f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~-~R~~Irk~i~nif~~fiye~e~~~GIaeLLeil 240 (392)
T 2jak_A 162 FQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLG-LRAYIRKQINNIFYRFIYETEHHNGIAELLEIL 240 (392)
T ss_dssp CCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHH
T ss_pred CChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 344444555543 667788899999999998555444444332211 12223322 233333332222233344566788
Q ss_pred HHHhhhC-CCcchHHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHH
Q 000196 136 GHLARAG-GAMTADEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERA 214 (1874)
Q Consensus 136 g~l~~~~-g~~~~~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA 214 (1874)
|.+...- -.+..++..++.+.+++......-......=..++.+..+.-|++..+.+..++ ..|..-..++...
T Consensus 241 gsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LL-k~WP~tns~Kevl---- 315 (392)
T 2jak_A 241 GSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALL-KYWPKTHSPKEVM---- 315 (392)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHH-HSSCSSCCTTHHH----
T ss_pred HHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHH-HhCCCCCchHHHH----
Confidence 8877641 234566777777766665543222222222223444455666666554444444 3444433333322
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHH
Q 000196 215 VEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLL 262 (1874)
Q Consensus 215 ~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~ 262 (1874)
-|+.+.+++..-++..-.+....++..+...+.++. -.+...|+.
T Consensus 316 --FL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~h-fqVAErAL~ 360 (392)
T 2jak_A 316 --FLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPH-FQVAERALY 360 (392)
T ss_dssp --HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSS-HHHHHHHHG
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHH
Confidence 233333333323333334556667777777776654 344555443
No 299
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=62.67 E-value=52 Score=33.13 Aligned_cols=113 Identities=11% Similarity=0.020 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
+...+++...-...++|+..-..+++.++... - ...+.++.|..-++..++.+...|+.+|..++++++..|...
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~-~----~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~e 86 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDF-E----GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDE 86 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS-S----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC-C----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44444444333445688888888888886322 1 124578888888999999999999999999999998655332
Q ss_pred H--HHHHHHHHHHHhh----CCCChHhHHHHHHHHHHHHHhCcc
Q 000196 638 L--RRHLIQLLTYLEQ----SSADNKCREESAKLLGCLIRNCER 675 (1874)
Q Consensus 638 l--~~~l~~~l~~l~~----~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1874)
+ ++++..+...+.. +..+...++..+.++..-+...+.
T Consensus 87 ias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 87 VGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 2 3445444444431 114567888888888888877654
No 300
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=62.39 E-value=37 Score=38.35 Aligned_cols=113 Identities=9% Similarity=-0.067 Sum_probs=72.9
Q ss_pred HhccchhhhhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh------h-hhhcHHHHHHhc
Q 000196 1296 EKCRAFAKALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL------D-VQLKESWYEKLQ 1368 (1874)
Q Consensus 1296 ~~c~a~a~AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~------~-~~~~~~~~E~lg 1368 (1874)
..-+.|..|.-.++.-... .+... ..-.+.-+|.+.++++.+...++...... . .-..+..++.+|
T Consensus 113 ~~~g~y~eA~~~l~~~~~~------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 113 AAQGNYADAMEALEAAPVA------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHTCHHHHHHHHTSSCCT------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHhc------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 3446677777666544321 11112 33456678999999999998887433211 0 112345689999
Q ss_pred CHHHHHHHHHHHHhccCC-CchhHHhHhhHhHHHHHhhCHHHHHHHHhh
Q 000196 1369 RWDDALKAYTNKASQASN-PHIVLEATLGRMRCLAALARWEELNNLCKE 1416 (1874)
Q Consensus 1369 ~W~~Al~~y~~~~~~~~~-~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~ 1416 (1874)
++++|+.+|++.... +. |....+....+-.||.++|+-++-....+.
T Consensus 186 ~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~ 233 (282)
T 4f3v_A 186 LFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEW 233 (282)
T ss_dssp CHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999988743 22 432345667788899999998776665544
No 301
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=62.39 E-value=32 Score=44.59 Aligned_cols=114 Identities=8% Similarity=0.092 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcC
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSS 1648 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~ 1648 (1874)
...|+.++++.|+.|..+.|.+.+.++.+..+. ..+.+..+++.+-|..|+. ...|.+.++..++.+..
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~---------~~~~lyi~~A~lE~~~~~d--~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL---------VTPDIYLENAYIEYHISKD--TKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG---------SCTHHHHHHHHHHHTTTSC--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------CChHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHCCC
Confidence 568999999999999999999999888764111 1356777888888887642 46788888887776431
Q ss_pred CCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc---cchHHHHHHHHH
Q 000196 1649 CPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT---KWGKAWHSWALF 1721 (1874)
Q Consensus 1649 ~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~---~~~k~w~~wA~~ 1721 (1874)
... ....++++.... ...+.+...|..|++..+ +....|..|+.|
T Consensus 503 ------------------~~~----~w~~y~~fe~~~------~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 503 ------------------DGE----YINKYLDFLIYV------NEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp ------------------CHH----HHHHHHHHHHHH------TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred ------------------chH----HHHHHHHHHHhC------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111 233445554443 346888999999999887 567889999877
No 302
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=62.11 E-value=11 Score=38.48 Aligned_cols=79 Identities=16% Similarity=0.083 Sum_probs=53.2
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCC--chhhHHHHHHHH
Q 000196 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPS--VAPQFVVHAVTG 1748 (1874)
Q Consensus 1671 ~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~--~~~~~~~~ai~~ 1748 (1874)
++.++..+|++..-.. ..+.+++.+..|++|++++|+...+|+.+|..+...-... |. ........|+++
T Consensus 42 ~G~~l~~l~~~~~g~~---al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~-----P~~~~a~g~~~eA~~~ 113 (158)
T 1zu2_A 42 WGGVLLELSQFHSISD---AKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT-----PDETEAKHNFDLATQF 113 (158)
T ss_dssp HHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhh---hHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC-----cchhhhhccHHHHHHH
Confidence 4556666665531000 0012678999999999999999999999998877542110 11 112356789999
Q ss_pred HHHHHhhcc
Q 000196 1749 YFHSIACAA 1757 (1874)
Q Consensus 1749 f~~si~~~~ 1757 (1874)
|-+++.+.+
T Consensus 114 ~~kAl~l~P 122 (158)
T 1zu2_A 114 FQQAVDEQP 122 (158)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 999999863
No 303
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=61.46 E-value=16 Score=34.71 Aligned_cols=48 Identities=21% Similarity=0.182 Sum_probs=30.4
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHH
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLC 1414 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~ 1414 (1874)
|.+.|+|++|+..|++.+...++. .+....+-.|+..+|+++.-....
T Consensus 37 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~ 84 (117)
T 3k9i_A 37 FRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELL 84 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 566777777777777776654432 344555667777777776554443
No 304
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=59.76 E-value=17 Score=42.74 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCC---------ChHHHHHHHHHHHhcCCcchHHHHHHHH
Q 000196 1569 VETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHG---------PPQVMYAYLKYQWSLGEDLKRKEAFARL 1639 (1874)
Q Consensus 1569 ~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~---------~~~v~~e~~k~lw~~g~~~~~~~Al~~l 1639 (1874)
...|...+..+.+.|++..|.....++..+.+.... ....+ ...+.+..+.++...|+ ..+|+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~---~~~A~~~~ 253 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--FQLYGKYQDMALAVKNPCHLNIAACLIKLKR---YDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--HTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--hhhcccHHHHHHHHHHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 677889999999999999999999988776542100 00000 00134445555556664 45677777
Q ss_pred HHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1640 QTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
+..+..-. ..+++++.+|.-...+ ...++....|++|++++|+...+|..++
T Consensus 254 ~~al~~~p----------------------~~~~a~~~lg~a~~~~------g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 254 NIVLTEEE----------------------KNPKALFRRGKAKAEL------GQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHHCT----------------------TCHHHHHHHHHHHHTT------TCHHHHHHHHHHTTC-------------
T ss_pred HHHHHhCC----------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 66553210 0134455555555443 2456777777777777777777776666
Q ss_pred HH
Q 000196 1720 LF 1721 (1874)
Q Consensus 1720 ~~ 1721 (1874)
..
T Consensus 306 ~l 307 (338)
T 2if4_A 306 AL 307 (338)
T ss_dssp --
T ss_pred HH
Confidence 44
No 305
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=59.73 E-value=25 Score=35.80 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1694 IPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1694 ~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
+++.++.|+.|++++|+...+|..|+....++-+.. . + ....+.+..||..|-++|.+.
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~-~-g--~~al~~~~eAi~~le~AL~ld 76 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFH-S-I--SDAKQMIQEAITKFEEALLID 76 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHS-C-H--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccc-h-h--hhhHhHHHHHHHHHHHHHHhC
Confidence 478899999999999999999999998665543211 0 0 012246789999999999986
No 306
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=59.50 E-value=42 Score=30.79 Aligned_cols=64 Identities=19% Similarity=0.074 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1568 DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
+...|...+....+.|+++.|...+.++...+|. .+.+.+..+..++..|+ ..+|+..++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~ 66 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ----------NPVGYSNKAMALIKLGE---YTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 3678999999999999999999999998887653 46778889999999995 6899999888663
No 307
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=58.99 E-value=46 Score=34.44 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
+...+++...-...++|+..-..+++.++.... ...+.++.|..-++..++.|+..|+.+|..++++++..|...
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~-----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~e 88 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELE-----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNE 88 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 344444333323346777777777777753211 124578888888899999999999999999999997654322
Q ss_pred H--HHHHHHHHHHHhh----CCCChHhHHHHHHHHHHHHHhCcc
Q 000196 638 L--RRHLIQLLTYLEQ----SSADNKCREESAKLLGCLIRNCER 675 (1874)
Q Consensus 638 l--~~~l~~~l~~l~~----~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1874)
+ ++++.++...+.. ...+..+|+.++.++..-....+.
T Consensus 89 vas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 89 VGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 2 3444444443431 113567888888888888877654
No 308
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=58.92 E-value=24 Score=33.39 Aligned_cols=66 Identities=20% Similarity=0.266 Sum_probs=56.5
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
++...|..++.+..+.|+++.|...+.++...+|. .+.+.+..+..+...|+ ..+|+..+++.+..
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN----------HQALRVFYAMVLYNLGR---YEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------chHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 45788999999999999999999999999887663 46788889999999995 68999999987654
No 309
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=58.41 E-value=1.1e+02 Score=35.78 Aligned_cols=162 Identities=10% Similarity=-0.040 Sum_probs=90.2
Q ss_pred HHHHHHHhccchhhhhhhccchhcccccccCC--CCcHHHHHHHHHHHhhcCChHHHhHHHHHHhchh----h------h
Q 000196 1290 LLGALAEKCRAFAKALHYKEMEFEGARSNRMD--ANPVAVVEALIHINNQLHQHEAAVGILTYAQKEL----D------V 1357 (1874)
Q Consensus 1290 ~l~~~a~~c~a~a~AL~y~E~~~~~~~~~~~~--~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~~~----~------~ 1357 (1874)
.++......|.|..|+.+.+......+..... +........|..+|...|+.|.+...++..-... . .
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 34566666777778887776654322110000 1112234568889999999999988776432110 0 1
Q ss_pred hhcHHHHHHhcCHHHHHHHHHHHHhccCCCc--hhHHh--HhhHhHHHHHhhCHHHHHHHHhhhcCCCCh--HHHHhHHH
Q 000196 1358 QLKESWYEKLQRWDDALKAYTNKASQASNPH--IVLEA--TLGRMRCLAALARWEELNNLCKEYWTPAEP--AARLEMAP 1431 (1874)
Q Consensus 1358 ~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~--~~~~~--~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~--~~~~~~~~ 1431 (1874)
......+...|++++|...|++.+.....+. ..+.. ..+....+...|+++.-....+........ ........
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 1223347889999999999998764322211 11111 124555677899998777666554322110 00011112
Q ss_pred HHHHHHHHcCChhhHHHHHh
Q 000196 1432 MAANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1432 ~~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
..+.+....|+++.-..++.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~ 277 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLE 277 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 34567777888877666554
No 310
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=56.78 E-value=2.3e+02 Score=31.06 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh----cCCcchHHHHHHHH
Q 000196 1568 DVETWLKFASLCRK----SGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS----LGEDLKRKEAFARL 1639 (1874)
Q Consensus 1568 ~~~~wlk~a~laRk----~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~----~g~~~~~~~Al~~l 1639 (1874)
+...|..++.+... .|+++.|...+.++...+ .+...+..+.+... .|+ ..+|+..+
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~ 101 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------YSNGCHLLGNLYYSGQGVSQN---TNKALQYY 101 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------CHHHHHHHHHHHHHTSSSCCC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------CHHHHHHHHHHHhCCCCcccC---HHHHHHHH
Confidence 35667777777777 788888888877776542 35566666666666 553 56787777
Q ss_pred HHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHH
Q 000196 1640 QTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWA 1719 (1874)
Q Consensus 1640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA 1719 (1874)
+..+.. . .+.++..+|.....-. + .....++.+..|++|.+.. ...+|+.+|
T Consensus 102 ~~a~~~-~-----------------------~~~a~~~lg~~~~~~~-~-~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 102 SKACDL-K-----------------------YAEGCASLGGIYHDGK-V-VTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHT-T-----------------------CHHHHHHHHHHHHHCS-S-SCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHc-C-----------------------CccHHHHHHHHHHcCC-C-cccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 765431 0 1234455555544310 0 1245778888888888765 456677666
Q ss_pred HHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh----cCCcHHHHHHHHhccc
Q 000196 1720 LFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN----HGATEEVQIALQKGFA 1794 (1874)
Q Consensus 1720 ~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~----~g~~~~v~~~~~~~~~ 1794 (1874)
.....-. + ...-...|++.|-+++..+ . ......+=.+++. .++..+....+++.+.
T Consensus 154 ~~~~~~~------~----~~~~~~~A~~~~~~a~~~~-----~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 154 SLYDAGR------G----TPKDLKKALASYDKACDLK-----D---SPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHHHHTS------S----SCCCHHHHHHHHHHHHHTT-----C---HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHcCC------C----CCCCHHHHHHHHHHHHHCC-----C---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 5543210 0 0122346777777777652 1 2334455555555 5555555555555543
No 311
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=56.29 E-value=23 Score=32.13 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=35.1
Q ss_pred HHHHhcCHHHHHHHHHHHHhccCCCchhHH-hHhhHhHHHHHhhCHHHHHHHHh
Q 000196 1363 WYEKLQRWDDALKAYTNKASQASNPHIVLE-ATLGRMRCLAALARWEELNNLCK 1415 (1874)
Q Consensus 1363 ~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~-~~~g~m~cl~~Lg~w~~l~~~~~ 1415 (1874)
.+.+.|+|++|+..|++.+...++. .. ....+-.|+..+|+|+.-....+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4677888899999988887654432 34 55666778888888876655544
No 312
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=56.12 E-value=83 Score=28.62 Aligned_cols=82 Identities=13% Similarity=-0.018 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~ 1692 (1874)
+...+..+..+...|+ ..+|+..++..+..... .+.++..+|.-...+ .
T Consensus 4 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~----------------------~~~~~~~lg~~~~~~------g 52 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGL---YREAVHCYDQLITAQPQ----------------------NPVGYSNKAMALIKL------G 52 (111)
T ss_dssp HHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHCTT----------------------CHHHHHHHHHHHHHT------T
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC----------------------CHHHHHHHHHHHHHh------c
Confidence 3455667788888885 68899999887653110 022333444433332 2
Q ss_pred CHHHHHHHHHHHHhhcccc------hHHHHHHHHHHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKW------GKAWHSWALFNTAV 1725 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~------~k~w~~wA~~n~~~ 1725 (1874)
..++.+..|.++++++|+. .++++..|......
T Consensus 53 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 91 (111)
T 2l6j_A 53 EYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAV 91 (111)
T ss_dssp CHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999987 77777777665543
No 313
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.83 E-value=65 Score=38.73 Aligned_cols=117 Identities=11% Similarity=0.077 Sum_probs=70.4
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccc
Q 000196 1578 LCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAAS 1657 (1874)
Q Consensus 1578 laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~ 1657 (1874)
+....|.++.|.....+.......... ......+....+++.-..|+ ..+|+..++++......
T Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~~~~~~~~--------- 167 (434)
T 4b4t_Q 104 FEQVPDSLDDQIFVCEKSIEFAKREKR----VFLKHSLSIKLATLHYQKKQ---YKDSLALINDLLREFKK--------- 167 (434)
T ss_dssp HCSCCSCHHHHHHHHHHHHHHHHHSSC----CSSHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHTT---------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhCc----cHHHHHHHHHHHHHHHHccC---hHHHHHHHHHHHHHHHh---------
Confidence 334456777776666554432111100 01124556667778878884 68899999887765432
Q ss_pred cccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1658 TSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1658 ~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
..++...+.++..+|+....+ ...+.....|.+|....+..+..+...|.+..
T Consensus 168 -------~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 168 -------LDDKPSLVDVHLLESKVYHKL------RNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp -------SSCSTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred -------cccchhHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 123456778888888877665 35678888888887776654444444444433
No 314
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=54.68 E-value=80 Score=34.18 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
++..+++...-...++|+..-..+.+.++.... ...+.++.|..-++..++.|+..|+.+|..++++++..+...
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~-----~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~e 80 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDV-----TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEE 80 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCc-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 344444433333346788887788887763221 124678888888899999999999999999999987544222
Q ss_pred H--HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 638 L--RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 638 l--~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
+ ++++..+..-+... .+..+++.++.++..-+...+
T Consensus 81 va~~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 81 VFTKENCEMFSSFLEST-PHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HSSHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHhc
Confidence 2 22333333333333 566778877777777766543
No 315
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=54.38 E-value=2.7e+02 Score=31.10 Aligned_cols=179 Identities=10% Similarity=-0.062 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCC
Q 000196 1570 ETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSC 1649 (1874)
Q Consensus 1570 ~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~ 1649 (1874)
..+.+-+....+.|+++.|...+.++....+.. ++ . .....+....+.+....| +..+|+..+++.+.....
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~-~~-~--~~~~~~~~~l~~~~~~~~---~~~~Ai~~~~~al~~~~~- 147 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-PE-F--QQFLQWQYYVAAYVLKKV---DYEYCILELKKLLNQQLT- 147 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCC-HH-H--HHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCC-hH-H--HHHHHHHHHHHHHHHccc---CHHHHHHHHHHHHHHhcc-
Confidence 344455677788999999999999887643211 00 0 000011112333333444 368899999987752111
Q ss_pred CccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc-------cchHHHHHHHHHH
Q 000196 1650 PVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT-------KWGKAWHSWALFN 1722 (1874)
Q Consensus 1650 ~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~-------~~~k~w~~wA~~n 1722 (1874)
..+....+.++.-+|.-.... ...++.+.+|++|.+... ....+|+..|..+
T Consensus 148 ---------------~~~~~~~~~~~~~lg~~y~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 3u3w_A 148 ---------------GIDVYQNLYIENAIANIYAEN------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp ---------------CSCTTHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred ---------------cccHHHHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 112234566677777665554 357889999999985432 2334666666555
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcch-HHhHHHHHHHHHhcCCc-HHHHHHHHhc
Q 000196 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDS-LQDILRLLTLWFNHGAT-EEVQIALQKG 1792 (1874)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~-~q~~~RlLtLwf~~g~~-~~v~~~~~~~ 1792 (1874)
.+. + +| ..|++.|-+++.+.... +..+. -.....+=.+++..|.. ++....+++.
T Consensus 207 ~~~-------~------~y-~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 207 YLD-------S------RY-EESLYQVNKAIEISCRI-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHT-------T------CH-HHHHHHHHHHHHHHHHT-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHH-------h------HH-HHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 431 1 22 46777777777764321 12222 22344555566777744 5555544444
No 316
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.94 E-value=56 Score=33.50 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=68.2
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHHHHHH
Q 000196 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTY 648 (1874)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~ 648 (1874)
.++|+..-..+++.++.... ...+.++.|..-++..++.|+..|+.+|..++++++..|...+ ++++..+...
T Consensus 29 ~~~Dw~~~leicD~I~~~~~-----~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l 103 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGSTPN-----GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAV 103 (163)
T ss_dssp SSCCHHHHHHHHHHHHHSSS-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 46788877777777752111 1246788888888999999999999999999999976543222 3444444444
Q ss_pred HhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 649 LEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 649 l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
+... .++.+++.+..++..-....+
T Consensus 104 ~~~~-~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 104 IKNK-AHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHTT-CCHHHHHHHHHHHHHHHHHTT
T ss_pred HccC-CCHHHHHHHHHHHHHHHHHhc
Confidence 4432 567888888888877777655
No 317
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=53.86 E-value=34 Score=42.36 Aligned_cols=87 Identities=6% Similarity=-0.083 Sum_probs=53.4
Q ss_pred Hhccchhhhhhhccchhcccccc--cCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc---------hhh----hhhc
Q 000196 1296 EKCRAFAKALHYKEMEFEGARSN--RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK---------ELD----VQLK 1360 (1874)
Q Consensus 1296 ~~c~a~a~AL~y~E~~~~~~~~~--~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~---------~~~----~~~~ 1360 (1874)
..-|.|..|+-+.|......... ...+........|..+|..+|+.|.|.-+.+.+-. +.+ ....
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34455666665554443211100 01112235677899999999999999887764321 111 1223
Q ss_pred HHHHHHhcCHHHHHHHHHHHHh
Q 000196 1361 ESWYEKLQRWDDALKAYTNKAS 1382 (1874)
Q Consensus 1361 ~~~~E~lg~W~~Al~~y~~~~~ 1382 (1874)
+..|-..|+|++|...|++.+.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4568899999999999999875
No 318
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=53.37 E-value=69 Score=36.68 Aligned_cols=141 Identities=9% Similarity=-0.032 Sum_probs=83.3
Q ss_pred hhhhccchhcccccccCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHH------hchhhhh-hcHHHHHHhcCHHHHHHH
Q 000196 1304 ALHYKEMEFEGARSNRMDANPVAVVEALIHINNQLHQHEAAVGILTYA------QKELDVQ-LKESWYEKLQRWDDALKA 1376 (1874)
Q Consensus 1304 AL~y~E~~~~~~~~~~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~------~~~~~~~-~~~~~~E~lg~W~~Al~~ 1376 (1874)
|+-++|...... .......-.|..+|...|++|.|.-++... ..+.+.. +....+-+.|+-+.|.+.
T Consensus 85 a~~~l~~l~~~~------~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK------QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566666655321 122344468999999999999998888754 1222211 233458999999999999
Q ss_pred HHHHHhccCC---C-chh-HHhHhhHhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHh
Q 000196 1377 YTNKASQASN---P-HIV-LEATLGRMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1377 y~~~~~~~~~---~-~~~-~~~~~g~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
+++..+..++ . +.. .....+|+.....-++++.-....++.... .+++... .+...+.+++|+|+..+..+.
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~--~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQ--LGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHH--HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccH--HHHHHHHHHcCCHHHHHHHHH
Confidence 9876543321 0 111 122235666555444665554444443222 2222111 122229999999999999887
Q ss_pred hc
Q 000196 1452 RL 1453 (1874)
Q Consensus 1452 ~~ 1453 (1874)
.+
T Consensus 236 ~l 237 (310)
T 3mv2_B 236 LL 237 (310)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 319
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=53.28 E-value=57 Score=44.76 Aligned_cols=153 Identities=10% Similarity=0.017 Sum_probs=95.5
Q ss_pred ccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHH
Q 000196 186 TVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRETRWRVQWYYRMFEATQDGLGRNAPVHSIHGSLLAVG 265 (1874)
Q Consensus 186 ~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~al~~l~ 265 (1874)
..+..|++.++...=..++.+++.||+-+......++... +...+.+.+..+...+.. ..+.+ ..+|+.+|.
T Consensus 392 ~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f---d~~~qqeVl~~Lv~hi~s----g~~~e-Vd~ALdvL~ 463 (1323)
T 3s4w_B 392 LVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF---DTYCQQEVVGALVTHVCS----GTEAE-VDTALDVLL 463 (1323)
T ss_dssp HHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHH----CCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHhhhcC----CCcHH-HHHHHHHHH
Confidence 3567888889888888899999999999999888887653 222233444444444433 22233 556888888
Q ss_pred HHHHcchhhhHHHHHHHHHHHHHHhhc-chhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHHHHHHhhcCCCCcchHHHH
Q 000196 266 ELLRNTGEFMMSRYREVAEIVLRYLEH-RDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMNHILTVLRIPAERDSGFIA 344 (1874)
Q Consensus 266 ~ll~~~~~~~~~~~~~i~~~ll~~~~~-~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~~Ll~~L~~~~~R~~a~~a 344 (1874)
.|....++.+.+ +...+..+|.++++ ....+|+. ..++..+|...+.......-+++.-.+-.+|.+...+.+-...
T Consensus 464 ~L~~~~~~~l~~-~a~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGI 541 (1323)
T 3s4w_B 464 ELIVLNASAMRL-NAAFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGI 541 (1323)
T ss_dssp HHHHHCHHHHHH-THHHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHhcCHHHHhH-HHHHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhH
Confidence 888766665655 33355556666655 45667765 7777777754432211112356666667788777655444444
Q ss_pred HHHH
Q 000196 345 LGEM 348 (1874)
Q Consensus 345 lg~l 348 (1874)
||.+
T Consensus 542 IGav 545 (1323)
T 3s4w_B 542 IGAV 545 (1323)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 320
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=52.99 E-value=69 Score=29.81 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=54.9
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAM 1644 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~ 1644 (1874)
++...|..++.+..+.|+++.|...+.++...+|. .+.+.+..+.++...|+ ..+|+..++..+.
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~---~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT----------YSVAWKWLGKTLQGQGD---RAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------CHHHHHHHHHHHHHHTC---HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC----------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 45789999999999999999999999999887653 35677888999999995 6889999888664
No 321
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=52.79 E-value=55 Score=29.42 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCc-chhhHHHHHHHHhhhHhhcCCCCCCCCHH
Q 000196 1617 YAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATST-NVPLIARVYLKLGSWKRALPPGLDDESIP 1695 (1874)
Q Consensus 1617 ~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~a~~~~~~g~w~~~~~~~~~~~~~~ 1695 (1874)
+..+..+...|+ ..+|+..++..+...... .. -...+|.+|...|+ .+
T Consensus 4 ~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~---------------~~~~~~~lg~~~~~~~~-------------~~ 52 (99)
T 2kc7_A 4 LKTIKELINQGD---IENALQALEEFLQTEPVG---------------KDEAYYLMGNAYRKLGD-------------WQ 52 (99)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHCSST---------------HHHHHHHHHHHHHHHTC-------------HH
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHCCCc---------------HHHHHHHHHHHHHHcCC-------------HH
Confidence 456667777884 688999999876532100 00 11224455554444 46
Q ss_pred HHHHHHHHHHhhcccchHHHHH
Q 000196 1696 EIIAAYRNATQCATKWGKAWHS 1717 (1874)
Q Consensus 1696 ~i~~~y~~a~~~~~~~~k~w~~ 1717 (1874)
+.+..|+++++++|+...+|..
T Consensus 53 ~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 53 KALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HHHHHHHHHHHHCTTSTHHHHH
T ss_pred HHHHHHHHHHhcCCCcHHHHHH
Confidence 7889999999999999988843
No 322
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=52.71 E-value=85 Score=31.18 Aligned_cols=98 Identities=17% Similarity=0.173 Sum_probs=67.4
Q ss_pred hcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHHHHH
Q 000196 570 VADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLT 647 (1874)
Q Consensus 570 ~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~ 647 (1874)
..++|+..-..+++.++... ....+.++.|-.-++..++.+...|+.+|..++++++..+...+ ++++..+..
T Consensus 18 l~~~dw~~ileicD~I~~~~-----~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQSR-----TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp SSSCCHHHHHHHHHHHTTST-----THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHCCC-----cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHH
Confidence 34578888888888876321 11246788888888999999999999999999999976544322 444444333
Q ss_pred HHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 648 YLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 648 ~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
.+. . .++..++....++..-....+
T Consensus 93 l~~-~-~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 93 VLN-K-GHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHH-H-SCHHHHHHHHHHHHHHHHHHT
T ss_pred Hhc-c-CCHHHHHHHHHHHHHHHHHhC
Confidence 332 2 467788888887777766543
No 323
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.48 E-value=70 Score=34.81 Aligned_cols=111 Identities=15% Similarity=0.183 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchH
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPA 637 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~ 637 (1874)
++..+++...-...++|+..-..+.+.++... -. ..+.++.|..-++..++.|+..|+.+|..++++++..+...
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~-~~----~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~e 83 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWESILQICDLIRQGD-TQ----AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDE 83 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS-SC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC-cc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 44444444333345677877777777776321 11 24678888888999999999999999999999988654322
Q ss_pred H--HHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCc
Q 000196 638 L--RRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCE 674 (1874)
Q Consensus 638 l--~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~ 674 (1874)
+ ++++..+...+... .+..+++..+.++..-+...+
T Consensus 84 ias~~fl~~l~~l~~~~-~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 84 VANKQTMEELKDLLKRQ-VEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HSSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhC
Confidence 2 23332222223333 567788888888877776654
No 324
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=51.24 E-value=2.8e+02 Score=30.35 Aligned_cols=168 Identities=11% Similarity=0.010 Sum_probs=111.1
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh----cCCcchHHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS----LGEDLKRKEAFARLQTL 1642 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~----~g~~~~~~~Al~~l~~~ 1642 (1874)
.+...|..++.+..+.|+++.|...+.++... +++...+..+.+++. .|+ ..+|+..+++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------~~~~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a 68 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL------------KENSGCFNLGVLYYQGQGVEKN---LKKAASFYAKA 68 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCcCCC---HHHHHHHHHHH
Confidence 35788999999999999999999999988762 235667777888877 774 68899998876
Q ss_pred HHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Q 000196 1643 AMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFN 1722 (1874)
Q Consensus 1643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n 1722 (1874)
+.. . .+.++..+|.....-. + .....++.+..|++|++.. ...+|+.+|...
T Consensus 69 ~~~-~-----------------------~~~a~~~lg~~~~~g~-~-~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 120 (273)
T 1ouv_A 69 CDL-N-----------------------YSNGCHLLGNLYYSGQ-G-VSQNTNKALQYYSKACDLK--YAEGCASLGGIY 120 (273)
T ss_dssp HHT-T-----------------------CHHHHHHHHHHHHHTS-S-SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHC-C-----------------------CHHHHHHHHHHHhCCC-C-cccCHHHHHHHHHHHHHcC--CccHHHHHHHHH
Confidence 532 0 1334455555544310 0 1246789999999999874 678888888775
Q ss_pred HHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHh----cCCcHHHHHHHHhcccC
Q 000196 1723 TAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFN----HGATEEVQIALQKGFAH 1795 (1874)
Q Consensus 1723 ~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~----~g~~~~v~~~~~~~~~~ 1795 (1874)
..-. + ...-...|++.|-+++..+ .......+=.++.. .++.++....+++.+..
T Consensus 121 ~~~~------~----~~~~~~~A~~~~~~a~~~~--------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 121 HDGK------V----VTRDFKKAVEYFTKACDLN--------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHCS------S----SCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HcCC------C----cccCHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5310 0 1123457899999988763 12334455555555 56666666666655543
No 325
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=50.76 E-value=64 Score=36.39 Aligned_cols=128 Identities=16% Similarity=0.112 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhcCChHHHhHHHHHHhc-hh---hhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHH
Q 000196 1325 VAVVEALIHINNQLHQHEAAVGILTYAQK-EL---DVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRC 1400 (1874)
Q Consensus 1325 ~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~-~~---~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~c 1400 (1874)
.+..-.+..++...|+++.+..++..... .. ..-.....+-+.|+|++|+..++.... .+++........-+=.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCcccHHHHHHHHHHH
Confidence 45556788899999999999988864321 11 111223358899999999999985543 22221001234455567
Q ss_pred HHHhhCHHHHHHHHhhhcCCCC-hHHHHhHHHHHHHHHHHcCChhhHHHHHhhc
Q 000196 1401 LAALARWEELNNLCKEYWTPAE-PAARLEMAPMAANAAWNMGEWDQMAEYVSRL 1453 (1874)
Q Consensus 1401 l~~Lg~w~~l~~~~~~~~~~~~-~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~ 1453 (1874)
+..||+++.-....+..-.... |..........+.+..++|+-+.-....+.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8999999877766654322211 3323334456677888899988877665543
No 326
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.87 E-value=31 Score=41.94 Aligned_cols=87 Identities=11% Similarity=0.040 Sum_probs=61.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh----cCCCChHHHHhHHHHHHHHH
Q 000196 1362 SWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY----WTPAEPAARLEMAPMAANAA 1437 (1874)
Q Consensus 1362 ~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~----~~~~~~~~~~~~~~~~a~aa 1437 (1874)
..|.+.|++++|+++|.+.......+....+...+.||+....++|..+..+.... ....+++.+..+..+.....
T Consensus 139 ~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~ 218 (429)
T 4b4t_R 139 EYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHC 218 (429)
T ss_dssp HHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH
Confidence 34788999999999999876654444444678899999999999998887665431 12224455555666666677
Q ss_pred HHcCChhhHHH
Q 000196 1438 WNMGEWDQMAE 1448 (1874)
Q Consensus 1438 w~l~~Wd~~~~ 1448 (1874)
|..++|....+
T Consensus 219 l~~r~f~~Aa~ 229 (429)
T 4b4t_R 219 LAVRNFKEAAK 229 (429)
T ss_dssp GGTSCHHHHHH
T ss_pred HHhChHHHHHH
Confidence 77777766544
No 327
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=48.53 E-value=26 Score=42.61 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=51.7
Q ss_pred HHhccchhhhhhhccchhcccccc--cCCCCcHHHHHHHHHHHhhcCChHHHhHHHHHHhc---------hhh----hhh
Q 000196 1295 AEKCRAFAKALHYKEMEFEGARSN--RMDANPVAVVEALIHINNQLHQHEAAVGILTYAQK---------ELD----VQL 1359 (1874)
Q Consensus 1295 a~~c~a~a~AL~y~E~~~~~~~~~--~~~~~~~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~---------~~~----~~~ 1359 (1874)
+.+.+.|..|+-+.|......... ...+....+...|..+|..+|+.|.|.-+.+.+-. +.+ ...
T Consensus 308 ~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 308 AKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 334556666666555443211100 01112234567888999999999988877664321 111 122
Q ss_pred cHHHHHHhcCHHHHHHHHHHHHh
Q 000196 1360 KESWYEKLQRWDDALKAYTNKAS 1382 (1874)
Q Consensus 1360 ~~~~~E~lg~W~~Al~~y~~~~~ 1382 (1874)
.+..|...|+|++|+..|++.+.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 34468888999999999988764
No 328
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=47.31 E-value=91 Score=37.75 Aligned_cols=86 Identities=7% Similarity=0.001 Sum_probs=54.7
Q ss_pred HHhcCHHHHHHHHHHHHhccC-----CCchhHHhHhhHhHHHHHhhCHHHHHHHHhh-------hcCCCChHHHHhHHHH
Q 000196 1365 EKLQRWDDALKAYTNKASQAS-----NPHIVLEATLGRMRCLAALARWEELNNLCKE-------YWTPAEPAARLEMAPM 1432 (1874)
Q Consensus 1365 E~lg~W~~Al~~y~~~~~~~~-----~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~-------~~~~~~~~~~~~~~~~ 1432 (1874)
++.|+|++|++.|++.+.... +..+.......+...|..+|+|+.-..+.+. ......++.-..+..
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n- 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK- 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH-
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-
Confidence 456899999999999875321 1112233445667778889999876655543 223334544443333
Q ss_pred HHHHHHHcCChhhHHHHHh
Q 000196 1433 AANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1433 ~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
.+...|.+|+|+.-..+..
T Consensus 388 La~~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHH
Confidence 4568899999988776554
No 329
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=46.22 E-value=1.1e+02 Score=30.73 Aligned_cols=100 Identities=12% Similarity=0.061 Sum_probs=66.7
Q ss_pred cCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHH--HHHHHHHHHH
Q 000196 571 ADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPAL--RRHLIQLLTY 648 (1874)
Q Consensus 571 ~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l--~~~l~~~l~~ 648 (1874)
.++|+..-..+++.++... -...+.++.|..-++..++.|...|+.+|..++++++..|...+ ++++..+...
T Consensus 15 ~~~dw~~~leicD~I~~~~-----~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl 89 (148)
T 1mhq_A 15 SEQDWSAIQNFCEQVNTDP-----NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKV 89 (148)
T ss_dssp SSCCHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHcCC-----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHH
Confidence 4567777667777664211 11245688888888999999999999999999999986553333 3444444333
Q ss_pred Hhh----CCCChHhHHHHHHHHHHHHHhCcc
Q 000196 649 LEQ----SSADNKCREESAKLLGCLIRNCER 675 (1874)
Q Consensus 649 l~~----~~~~~~~r~~a~~~L~~l~~~~~~ 675 (1874)
+.. ...+..+++..+.++..-+...+.
T Consensus 90 ~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 90 LSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp TCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 321 113567788888888887776543
No 330
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=45.04 E-value=1.7e+02 Score=30.89 Aligned_cols=141 Identities=12% Similarity=-0.012 Sum_probs=95.2
Q ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 000196 1567 EDVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMEL 1646 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~ 1646 (1874)
.+...+..++.+....|++..|...+.++... +++...+..+.+....|-..+..+|+..++...+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~- 82 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------------GDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA- 82 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------------TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT-
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC-
Confidence 45788888999999999999999999888653 24566666666665532211367899988876431
Q ss_pred cCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcc--cchHHHHHHHHHHHH
Q 000196 1647 SSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCAT--KWGKAWHSWALFNTA 1724 (1874)
Q Consensus 1647 ~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~--~~~k~w~~wA~~n~~ 1724 (1874)
. .+.++..+|.....-. + ...+.++.+..|++|.+..+ ....+++.+|.++..
T Consensus 83 g-----------------------~~~a~~~Lg~~y~~g~-g-~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~ 137 (212)
T 3rjv_A 83 G-----------------------SKSGEIVLARVLVNRQ-A-GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS 137 (212)
T ss_dssp T-----------------------CHHHHHHHHHHHTCGG-G-SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred C-----------------------CHHHHHHHHHHHHcCC-C-CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence 0 1344556666553210 0 13578999999999999887 457899988877654
Q ss_pred HHHhhhccCCCCchhhHHHHHHHHHHHHHhh
Q 000196 1725 VMSHYTLRGLPSVAPQFVVHAVTGYFHSIAC 1755 (1874)
Q Consensus 1725 ~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~ 1755 (1874)
-. + ...-...|+..|-+++..
T Consensus 138 g~------g----~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 138 GV------H----GPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp TS------S----SSCCHHHHHHHHHHHHHT
T ss_pred CC------C----CCCCHHHHHHHHHHHHHc
Confidence 11 1 112345788899888876
No 331
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=44.78 E-value=3.6e+02 Score=29.78 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHH----HH
Q 000196 148 DEVEFQVKMALDWLRGDRVEYRRFAAVLILKEMAENASTVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRAC----LR 223 (1874)
Q Consensus 148 ~~v~~~~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~----~~ 223 (1874)
.+++..++..++. +.+++...|.-.+.++.+.+..-+ .+++.+++.++..++|+++.|-+.+..+...+ ++
T Consensus 49 ~ll~~~l~~il~~-~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~ 123 (257)
T 3gs3_A 49 ELAEEFLESVLSL-AHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQ 123 (257)
T ss_dssp GGHHHHHHHHHGG-GGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666664 344555667677778877775433 46778888888999999998887777665554 44
Q ss_pred HHhhcchh---hHHHH--HHHHHHHHHhhccCCCChhHHHHHHHHHHHHHH
Q 000196 224 VIEKRETR---WRVQW--YYRMFEATQDGLGRNAPVHSIHGSLLAVGELLR 269 (1874)
Q Consensus 224 ~i~~r~~~---~~~~~--~~~i~~~~~~~l~~~~~~~~~~~al~~l~~ll~ 269 (1874)
.+...... ....| +..+-..+.+-+.+. +..++-.++..+..++-
T Consensus 124 ~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 124 YLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHHH
Confidence 44432210 12333 566777777766554 35778888887777664
No 332
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=43.96 E-value=1.4e+02 Score=34.17 Aligned_cols=98 Identities=7% Similarity=0.020 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhcC--ccchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHh
Q 000196 170 RFAAVLILKEMAENAS--TVFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEK-RETRWRVQWYYRMFEATQD 246 (1874)
Q Consensus 170 r~aA~~~l~~la~~~p--~~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~-r~~~~~~~~~~~i~~~~~~ 246 (1874)
+.-++.++.-+..+.. ..+..+..++++.+...+.+++..+|-|++..+-.+.....+ ++.... ..++..+..
T Consensus 165 ~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~----~~ll~~l~~ 240 (304)
T 3ebb_A 165 QLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK----AQCLSLIST 240 (304)
T ss_dssp HHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH----HHHHHHHHH
Confidence 4444444444333322 245567788899888888889999999998888776554432 322111 123333333
Q ss_pred hccCCCChhHHHHHHHHHHHHHHcc
Q 000196 247 GLGRNAPVHSIHGSLLAVGELLRNT 271 (1874)
Q Consensus 247 ~l~~~~~~~~~~~al~~l~~ll~~~ 271 (1874)
-+....+.|..++++.+||.|+...
T Consensus 241 il~~~~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 241 ILEVVQDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHhccCCHHHHHHHHHHHHHHHhCC
Confidence 3333335799999999999998643
No 333
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=40.82 E-value=34 Score=45.49 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=55.1
Q ss_pred cHHHHHHHHhcccCCChhhHHHHHHHHHHhccCCC----hhHHHHHHHHHHHHHhhCchhhHHHHHHHhcCCcHHHHHHH
Q 000196 1782 TEEVQIALQKGFAHVNINTWLVVLPQIIARIHSNN----RAVRELIQSLLVRIGQSHPQALMYPLLVACKSISNLRRAAA 1857 (1874)
Q Consensus 1782 ~~~v~~~~~~~~~~ip~~~wl~~ipQLiari~~~~----~~v~~~l~~ll~~i~~~hPqa~ly~L~v~~kS~~~~R~~~a 1857 (1874)
++.|.+.--+.+...|.+.|+..+|||+-.|-+.. +-++-++..-+.. ....|+++|.|.+-..+ +....+.
T Consensus 485 d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLl~ra~~n--~~i~h~l~W~l~~e~~~--~~~~~r~ 560 (940)
T 2wxf_A 485 DCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYESYLDCELTKFLLGRALAN--RKIGHFLFWHLRSEMHV--PSVALRF 560 (940)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGCSSSSCHHHHHHHHHHHHC--HHHHHHHHHHHHTTTTC--HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhC--hHHHHHHHHHheecccC--chHHHHH
Confidence 45677777788999999999999999999996652 3333333333333 24678999998875443 3445556
Q ss_pred HHHHHHHhh
Q 000196 1858 QEVVDKVRQ 1866 (1874)
Q Consensus 1858 ~~Il~~~~~ 1866 (1874)
..|++.+..
T Consensus 561 ~~ile~~~~ 569 (940)
T 2wxf_A 561 GLIMEAYCR 569 (940)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 667766544
No 334
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=38.84 E-value=1.5e+02 Score=27.26 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=41.0
Q ss_pred HhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCC
Q 000196 1397 RMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDD 1455 (1874)
Q Consensus 1397 ~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~ 1455 (1874)
++.+|.+-|.|+.-..+.+.... ..+-|++|-|.|++|--+.++.++..+..
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c~-------pdlepw~ALce~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLAY-------PDLEPWLALCEYRLGLGSALESRLNRLAR 97 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCC-------GGGHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHcchhHHHHHHhcCCCCC-------chHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 45568889999988888776531 24568999999999999999999866654
No 335
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=38.33 E-value=1.2e+02 Score=40.68 Aligned_cols=88 Identities=8% Similarity=0.027 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhcCChHHHhHHHHHHhc------hhh---hhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHh
Q 000196 1325 VAVVEALIHINNQLHQHEAAVGILTYAQK------ELD---VQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATL 1395 (1874)
Q Consensus 1325 ~~~~e~L~~iy~~L~~~D~~~Gi~~~~~~------~~~---~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~ 1395 (1874)
..++..|++-|.+-|+.|.|..++..... ..+ .+..-.-|-+.|++++|++.|++-...+-.|+. -...
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv--vTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL--LSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH--HHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH--HHHH
Confidence 45788999999999999999999964221 011 111222378999999999999987665555653 3467
Q ss_pred hHhHHHHHhhCH-HHHHHHH
Q 000196 1396 GRMRCLAALARW-EELNNLC 1414 (1874)
Q Consensus 1396 g~m~cl~~Lg~w-~~l~~~~ 1414 (1874)
.+|.|+.+.|++ +....+.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll 224 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCL 224 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHH
Confidence 889999999985 4443333
No 336
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=36.99 E-value=1.1e+02 Score=40.62 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=31.2
Q ss_pred HHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHHHhhh
Q 000196 1364 YEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNLCKEY 1417 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~~ 1417 (1874)
.++.|+++.|..+|.+. .+ ....+++|..+|+|+.-..+++..
T Consensus 733 a~~~~~~~~A~~~~~~~----g~-------~~~a~~~~~~~~~~~~A~~lA~~~ 775 (814)
T 3mkq_A 733 AETTGKFNLAFNAYWIA----GD-------IQGAKDLLIKSQRFSEAAFLGSTY 775 (814)
T ss_dssp HHHTTCHHHHHHHHHHH----TC-------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHcCchHHHHHHHHHc----CC-------HHHHHHHHHHcCChHHHHHHHHHh
Confidence 56778888888777542 12 234677888899999888888875
No 337
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=35.83 E-value=47 Score=44.77 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhhccccCCCcchHHhHHHHHHHH-------------HhcCCcHHHHHHHHhcccCCChhhHHHHHHHHHH
Q 000196 1744 HAVTGYFHSIACAAHAKGVDDSLQDILRLLTLW-------------FNHGATEEVQIALQKGFAHVNINTWLVVLPQIIA 1810 (1874)
Q Consensus 1744 ~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLw-------------f~~g~~~~v~~~~~~~~~~ip~~~wl~~ipQLia 1810 (1874)
.|+.-|++|+.-+ .......+..||.-| ..|. ++.|.+---+.+...|.+.++..+|||+-
T Consensus 593 ~aL~k~l~sv~w~-----~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~-d~~VR~yAV~~L~~~~d~~l~~yLpQLVQ 666 (1092)
T 2y3a_A 593 QSLPKLLLSIKWN-----KLEDVAQLQALLQIWPKLPPREALELLDFNYP-DQYVREYAVGCLRQMSDEELSQYLLQLVQ 666 (1092)
T ss_dssp GGHHHHHHHSCTT-----CHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCC-CTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCC-----CHHHHHHHHHHHccCCCCCHHHHHHhcCccCC-CHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566665432 222344455555555 2333 23566666778899999999999999999
Q ss_pred hccCCChhHHHHHHHHHHHHHh--hCchhhHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 000196 1811 RIHSNNRAVRELIQSLLVRIGQ--SHPQALMYPLLVACKSISNLRRAAAQEVVDKVRQHS 1868 (1874)
Q Consensus 1811 ri~~~~~~v~~~l~~ll~~i~~--~hPqa~ly~L~v~~kS~~~~R~~~a~~Il~~~~~~~ 1868 (1874)
.|-+..-.-..+..-||.+-.+ ...|+++|.|.+-..+ +....+...|++.+...+
T Consensus 667 aLkyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~--~~~~~r~~~lle~~~~~~ 724 (1092)
T 2y3a_A 667 VLKYEPFLDCALSRFLLERALDNRRIGQFLFWHLRSEVHT--PAVSVQFGVILEAYCRGS 724 (1092)
T ss_dssp HHHHCSSSSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHT
T ss_pred HHhcccccccHHHHHHHHHHhhChHHHHHHHHHeeecccC--chHHHHHHHHHHHHHhhc
Confidence 9955421111223333333333 3678899999887654 334455667777765544
No 338
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=35.14 E-value=1.5e+02 Score=35.76 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=51.6
Q ss_pred HHHhcCHHHHHHHHHHHHhccCC-----CchhHHhHhhHhHHHHHhhCHHHHHHHHhh-------hcCCCChHHHHhHHH
Q 000196 1364 YEKLQRWDDALKAYTNKASQASN-----PHIVLEATLGRMRCLAALARWEELNNLCKE-------YWTPAEPAARLEMAP 1431 (1874)
Q Consensus 1364 ~E~lg~W~~Al~~y~~~~~~~~~-----~~~~~~~~~g~m~cl~~Lg~w~~l~~~~~~-------~~~~~~~~~~~~~~~ 1431 (1874)
+.+.|+|++|++.|++.+..... ..........+..-+..+|+|+.-..+.+. ......+..-..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44567889999998888753211 111223345566667788888766655542 222334444333333
Q ss_pred HHHHHHHHcCChhhHHHHHh
Q 000196 1432 MAANAAWNMGEWDQMAEYVS 1451 (1874)
Q Consensus 1432 ~~a~aaw~l~~Wd~~~~~~~ 1451 (1874)
.+...|..|+|+.-..+..
T Consensus 377 -La~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 377 -VGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp -HHHHHHHTTCHHHHHHHHH
T ss_pred -HHHHHHhcCCHHHHHHHHH
Confidence 3557889999988776544
No 339
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=35.12 E-value=6.7e+02 Score=30.21 Aligned_cols=140 Identities=16% Similarity=0.055 Sum_probs=93.3
Q ss_pred ccHHHHHHHHHHHHhc-----CChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKS-----GRISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQT 1641 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~-----g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~ 1641 (1874)
.+...+..++.+..+. ++++.|...+.++... +++...+..+.+....|...+..+|+..++.
T Consensus 289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~------------~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ------------GDATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4567788888888887 8999999998887654 2355556666666555533245788888887
Q ss_pred HHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Q 000196 1642 LAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALF 1721 (1874)
Q Consensus 1642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~ 1721 (1874)
.+.. . .+.++..+|.+...-. + ...+.++.+..|++|.+.. ...+|+.+|.+
T Consensus 357 a~~~-~-----------------------~~~a~~~Lg~~y~~g~-g-~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~ 408 (490)
T 2xm6_A 357 AAAK-G-----------------------EKAAQFNLGNALLQGK-G-VKKDEQQAAIWMRKAAEQG--LSAAQVQLGEI 408 (490)
T ss_dssp HHHT-T-----------------------CHHHHHHHHHHHHHTS-S-SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHC-C-----------------------CHHHHHHHHHHHHcCC-C-CCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 5532 0 1345667777765421 1 1357899999999999864 57788888877
Q ss_pred HHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1722 NTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1722 n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
+..-. + ...-...|+..|-+++..+
T Consensus 409 y~~g~------g----~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 409 YYYGL------G----VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHTS------S----SCCCHHHHHHHHHHHHHHH
T ss_pred HHcCC------C----CCCCHHHHHHHHHHHHHCC
Confidence 55311 1 1123457899999988775
No 340
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=33.90 E-value=3.5e+02 Score=31.01 Aligned_cols=112 Identities=17% Similarity=0.155 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCCC-chhhHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHhhhcCCChhhhhhHHHHHhHhhcccc
Q 000196 24 DALNRILADLCTHGN-PKEGASLALRKHIEEQARDLGGEAFSRFMDQ-LYDRISGLLESNDAAENLGALRAIDELIDVAL 101 (1874)
Q Consensus 24 ~~~~~~~~~L~s~~~-~~~~aa~~l~~~v~~~~~~~~~~~~~~~~~~-l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~ 101 (1874)
-.+..+++.|.+++. +.++|...|+.++. -+.++...|++. =...+.+++.+.+.+..--++.|+.+|+....
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q-----~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~ 192 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQ-----EDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD 192 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----TCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhh-----cchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc
Confidence 357788899987653 45557777777551 122233333321 02335556667788888889999999977632
Q ss_pred CcchhHH--HHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhC
Q 000196 102 GENASKV--SKFSNYMRTVFEVKRDREILVLASKVLGHLARAG 142 (1874)
Q Consensus 102 ~~~~~~~--~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~ 142 (1874)
|- ...+ ..|..-+-.++. +.+..|.+.|.+.|-.++...
T Consensus 193 Gm-~gvvs~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~s 233 (339)
T 3dad_A 193 GM-LGVVAHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYS 233 (339)
T ss_dssp HH-HHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHC
T ss_pred cc-cchhCCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccC
Confidence 21 1111 234444444443 467899999999999888763
No 341
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.98 E-value=2.3e+02 Score=28.63 Aligned_cols=111 Identities=11% Similarity=0.126 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHhccCCCCcchhhccHhhHHHHHHHhC-CCCHHHHHHHHHHHHhhhcCCcCccch
Q 000196 558 IEELVEKLLIAAVADADVTVRHSIFSSLYGNRGFDDFLAQADCLSAIFAALN-DEDFDVREYAISVAGRLSEKNPAYVLP 636 (1874)
Q Consensus 558 ~~~vl~~Ll~~~~~d~~~~vR~~~l~~l~~~~~f~~~L~~~~~l~~L~~~l~-D~~~~VR~~a~~~l~~l~~~~p~~v~p 636 (1874)
+...+++...-...++|+..-..+++.++.... ...+.++.|..-++ ..++.|+..|+.+|..++++++..+..
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~-----~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~ 91 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEE-----GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHV 91 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSS-----HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCc-----cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 344444433333345777777777777752111 12467888888886 578999999999999999999765533
Q ss_pred HH--HHHHHH-HHHHHhh-CCCChHhHHHHHHHHHHHHHhC
Q 000196 637 AL--RRHLIQ-LLTYLEQ-SSADNKCREESAKLLGCLIRNC 673 (1874)
Q Consensus 637 ~l--~~~l~~-~l~~l~~-~~~~~~~r~~a~~~L~~l~~~~ 673 (1874)
.+ ++++.+ ++..+.. .......++.++.++..-....
T Consensus 92 eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 92 LVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 22 334444 2333322 1123467777777777666554
No 342
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=31.92 E-value=1.5e+02 Score=27.22 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred HhHHHHHhhCHHHHHHHHhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhcCC
Q 000196 1397 RMRCLAALARWEELNNLCKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRLDD 1455 (1874)
Q Consensus 1397 ~m~cl~~Lg~w~~l~~~~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~~~ 1455 (1874)
++.+|.+-|.|+.-..+.+... . ..+-|++|-|.|++|--+.++.++..+..
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c---~----pdlepw~ALce~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNP---W----PALEPWFALCEWHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCC---C----GGGHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcchhHHHHHHhcCCCC---C----chHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4556888999998887776543 1 24568999999999999999998865543
No 343
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=31.62 E-value=1.4e+02 Score=36.16 Aligned_cols=57 Identities=14% Similarity=-0.034 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhcCChHHHhHHHHHHhc---------hhh----hhhcHHHHHHhcCHHHHHHHHHHHHh
Q 000196 1326 AVVEALIHINNQLHQHEAAVGILTYAQK---------ELD----VQLKESWYEKLQRWDDALKAYTNKAS 1382 (1874)
Q Consensus 1326 ~~~e~L~~iy~~L~~~D~~~Gi~~~~~~---------~~~----~~~~~~~~E~lg~W~~Al~~y~~~~~ 1382 (1874)
.+...|..+|...|+.|.|....+.+-. +.+ ....+..|-..|+|++|+..|++.+.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4567888899999999988776653221 011 11234458889999999999998774
No 344
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=31.43 E-value=52 Score=24.89 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=26.7
Q ss_pred hhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHhhh
Q 000196 1507 QLSELEEVIDYCTLPVGNPVAEGRRAIIRNMWTERIQG 1544 (1874)
Q Consensus 1507 ~L~EleEii~~~~~~~~~~~~~~~~~~l~~~W~~Rl~~ 1544 (1874)
.|.|||..++.....++.....++.+.+...|..|-..
T Consensus 13 rldelekalealsaedghddvgqrlesllrrwnsrrad 50 (60)
T 1pzq_A 13 RLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRAD 50 (60)
T ss_dssp HHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhcccC
Confidence 47889998887765555433346778888999887543
No 345
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.27 E-value=1.9e+02 Score=31.35 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=68.0
Q ss_pred HHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhccccc
Q 000196 686 KALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTGYVI 765 (1874)
Q Consensus 686 ~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~~~i 765 (1874)
..++.++.++.....+......++..| .... . --.+.+..|...|+.. +..+...|+..|..++.++|..+
T Consensus 10 ~~~i~kAT~~~~~~~dw~~ileicD~I----~~~~--~--~~k~a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 10 ERLLDKATSQLLLETDWESILQICDLI----RQGD--T--QAKYAVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp HHHHHHHTCTTCSSCCHHHHHHHHHHH----HTTS--S--CHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHH----hCCC--c--cHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHH
Confidence 445555655433233544444433333 2211 1 1256777888888854 56788889999999999999753
Q ss_pred cccccchHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 766 TPYNEYPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 766 ~p~~~~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
..-.--.++++.|..+++...+..|+..++.++..-+
T Consensus 81 ~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 81 HDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2222224677777777765567899999998886543
No 346
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=30.97 E-value=2e+02 Score=37.83 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=58.2
Q ss_pred HHhhcCChHHHhHHHHHHhchhhhhhcHHHHHHhcCHHHHHHHHHHHHhccCCCchhHHhHhhHhHHHHHhhCHHHHHHH
Q 000196 1334 INNQLHQHEAAVGILTYAQKELDVQLKESWYEKLQRWDDALKAYTNKASQASNPHIVLEATLGRMRCLAALARWEELNNL 1413 (1874)
Q Consensus 1334 iy~~L~~~D~~~Gi~~~~~~~~~~~~~~~~~E~lg~W~~Al~~y~~~~~~~~~~~~~~~~~~g~m~cl~~Lg~w~~l~~~ 1413 (1874)
++-++|+.|.|.-+.+.......-...+..+.+.|+++.|..+|.+.- + ..+.+..+..+|.++.+...
T Consensus 661 ~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~----d-------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAH----D-------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----C-------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc----C-------hhhhHHHHHHcCCHHHHHHH
Confidence 445566666665444321111111223334778888888888887531 1 24566666667877776666
Q ss_pred HhhhcCCCChHHHHhHHHHHHHHHHHcCChhhHHHHHhhc
Q 000196 1414 CKEYWTPAEPAARLEMAPMAANAAWNMGEWDQMAEYVSRL 1453 (1874)
Q Consensus 1414 ~~~~~~~~~~~~~~~~~~~~a~aaw~l~~Wd~~~~~~~~~ 1453 (1874)
++..-. ......+..+++.+|+++.-.+....+
T Consensus 730 ~~~a~~-------~~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-------TGKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-------TTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-------cCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 543211 111234567888899999888765543
No 347
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=30.97 E-value=1.7e+02 Score=36.03 Aligned_cols=87 Identities=9% Similarity=-0.002 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhcCCcc--cHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCcccccCCCChHHHH---HHHHHHHh
Q 000196 1551 VWQALLAVRALVLPPTE--DVETWLKFASLCRKSGRISQARSTLVKLLQYDPETSHENVRYHGPPQVMY---AYLKYQWS 1625 (1874)
Q Consensus 1551 ~w~~iL~~R~~vl~~~e--~~~~wlk~a~laRk~g~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~---e~~k~lw~ 1625 (1874)
..++.|..|.-++.+.. ...++-.++.+.+..|+++.|.....+++..... .....+|.+.. -.++++|.
T Consensus 331 l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~-----~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 331 LCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMK-----LYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHH
Confidence 56788889999998764 3788899999999999999999988776643110 01113555544 45678899
Q ss_pred cCCcchHHHHHHHHHHHHHH
Q 000196 1626 LGEDLKRKEAFARLQTLAME 1645 (1874)
Q Consensus 1626 ~g~~~~~~~Al~~l~~~~~~ 1645 (1874)
+|+ ..+|...+++-+.-
T Consensus 406 ~G~---~~eA~~~~~~Al~i 422 (490)
T 3n71_A 406 AGH---IEVGHGMICKAYAI 422 (490)
T ss_dssp TTC---HHHHHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHHHHH
Confidence 995 78999998876543
No 348
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=30.85 E-value=1.2e+02 Score=35.06 Aligned_cols=101 Identities=11% Similarity=-0.074 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccch-----------------HHHHHHHHHHHHHHHhhhccC
Q 000196 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWG-----------------KAWHSWALFNTAVMSHYTLRG 1733 (1874)
Q Consensus 1671 ~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~-----------------k~w~~wA~~n~~~~~~~~~~~ 1733 (1874)
.+..+..+|...... ...++.+..|.+|++++|+.. .+|+.+|..+.+ .+
T Consensus 178 ~a~~~~~~g~~~~~~------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-------~g 244 (338)
T 2if4_A 178 AADRRKMDGNSLFKE------EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-------LK 244 (338)
T ss_dssp HHHHHHHHHHHTCSS------SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-------TT
T ss_pred HHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-------cC
Confidence 466677777765433 456899999999999988754 255555544332 11
Q ss_pred CCCchhhHHHHHHHHHHHHHhhccccCCCcchHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCC
Q 000196 1734 LPSVAPQFVVHAVTGYFHSIACAAHAKGVDDSLQDILRLLTLWFNHGATEEVQIALQKGFAHVN 1797 (1874)
Q Consensus 1734 ~~~~~~~~~~~ai~~f~~si~~~~~~~~~~~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip 1797 (1874)
-...|+..|-++|.+. ........++=.+++..|...+....+++.+..-|
T Consensus 245 -------~~~~A~~~~~~al~~~------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 245 -------RYDEAIGHCNIVLTEE------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp -------CCHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred -------CHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 2237888999998874 23456678888888888998888888888775444
No 349
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=30.24 E-value=1.2e+02 Score=33.24 Aligned_cols=113 Identities=16% Similarity=0.236 Sum_probs=70.3
Q ss_pred HHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcH--HhHHHHHHHHHhcCcchhhHHHHHHHHHHHHhhcc---c
Q 000196 689 VARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYI--SELMPLIVEALLDGAAVTKREVAVSTLGQVVQSTG---Y 763 (1874)
Q Consensus 689 l~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~--~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~~~~---~ 763 (1874)
.|.+...+..++...++.+++..+|.|++....++..|+ .+++|..+..|.-+ +.-.|..|...+.++...-. +
T Consensus 103 yPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G-selSKtvAtfIlqKIL~dd~GL~Y 181 (268)
T 2fv2_A 103 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG-SELSKTVATFILQKILLDDTGLAY 181 (268)
T ss_dssp HHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred hhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-cHHHHHHHHHHHHHHhccchhHHH
Confidence 444443322223456778889999999987666777765 47999999999876 45566777777776653321 1
Q ss_pred ccccccc---chHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 000196 764 VITPYNE---YPQLLGLLLKMLNGELVWSTRREVLKVLGIMG 802 (1874)
Q Consensus 764 ~i~p~~~---~p~ll~~Ll~~l~~~~~~~vr~~al~~lg~lg 802 (1874)
...-+.. .-.++..++..+..+.++.+-+.+++|.-.+.
T Consensus 182 iC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 182 ICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred HHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 1111112 23345555555555667888888888866553
No 350
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=29.41 E-value=4.2e+02 Score=31.12 Aligned_cols=186 Identities=11% Similarity=0.084 Sum_probs=102.2
Q ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcCccchHHHHHHHHHHHHHhhCCCChHhHHHHHHHHHHHHHhCccccc
Q 000196 599 DCLSAIFAALNDEDFDVREYAISVAGRLSEKNPAYVLPALRRHLIQLLTYLEQSSADNKCREESAKLLGCLIRNCERLIR 678 (1874)
Q Consensus 599 ~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~~v~p~l~~~l~~~l~~l~~~~~~~~~r~~a~~~L~~l~~~~~~~~~ 678 (1874)
.++..|+..++.+++.-|.....+|.++-.... ...+++|+.+...+...-+......--.+.++.+|.++....-.++
T Consensus 174 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~-~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLK 252 (392)
T 2jak_A 174 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKFL-GLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK 252 (392)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCc
Confidence 577788888999999999999999988766553 2357778877776655544312222235678899999987654344
Q ss_pred c-chHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHH
Q 000196 679 P-YIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQV 757 (1874)
Q Consensus 679 p-y~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l 757 (1874)
+ +..-+..+++|..+... -+..-....+|+....+..+....+.+..++..| -..+..|...=+.-+..+
T Consensus 253 eehk~Fl~~vLlPLhk~~~----l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~W-----P~tns~KevlFL~eleei 323 (392)
T 2jak_A 253 EEHKIFLLKVLLPLHKVKS----LSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYW-----PKTHSPKEVMFLNELEEI 323 (392)
T ss_dssp HHHHHHHHHTTGGGGTSGG----GGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSS-----CSSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhccCCc----HHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhC-----CCCCchHHHHHHHHHHHH
Confidence 3 33334566677665431 2223345556666665554432222222111111 112334444456666777
Q ss_pred Hhhccccccccc-cchHHHHHHHHHhcCCCCHHHHHHHHHH
Q 000196 758 VQSTGYVITPYN-EYPQLLGLLLKMLNGELVWSTRREVLKV 797 (1874)
Q Consensus 758 ~~~~~~~i~p~~-~~p~ll~~Ll~~l~~~~~~~vr~~al~~ 797 (1874)
.+.++.. .+. ....+...+...+.+ .+-.|...|+..
T Consensus 324 Le~~~~~--~f~~i~~~lF~~la~ci~S-~hfqVAErAL~~ 361 (392)
T 2jak_A 324 LDVIEPS--EFVKIMEPLFRQLAKCVSS-PHFQVAERALYY 361 (392)
T ss_dssp HHTCCHH--HHHHHHHHHHHHHHHHHTC-SSHHHHHHHHGG
T ss_pred HHhCCHH--HHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHH
Confidence 6655332 111 112344444444444 356677666544
No 351
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=25.81 E-value=2.9e+02 Score=27.85 Aligned_cols=114 Identities=9% Similarity=0.128 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHHhHHHHHHHHHhcCcchhhHHHHHHHHHHHH
Q 000196 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYISELMPLIVEALLDGAAVTKREVAVSTLGQVV 758 (1874)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~ 758 (1874)
||-.+ +..++.++.++...+.+......++..+ .... .--.+.+..+...|+...+..+...|+..|..++
T Consensus 12 p~~s~-~~~~IekATs~~l~~~Dw~~~leicD~I----~~~~----~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~v 82 (157)
T 1elk_A 12 PFSSP-VGQRIEKATDGSLQSEDWALNMEICDII----NETE----EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCV 82 (157)
T ss_dssp GGGSH-HHHHHHHHTCTTCSSCCHHHHHHHHHHH----HHSS----SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHcCCCCCCcCHHHHHHHHHHH----hCCC----ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44333 4556666666543334555544444433 2211 1235677788888874335667788999999999
Q ss_pred hhccccccccccchHHHHH-HHHHhc--CCCCHHHHHHHHHHHHHh
Q 000196 759 QSTGYVITPYNEYPQLLGL-LLKMLN--GELVWSTRREVLKVLGIM 801 (1874)
Q Consensus 759 ~~~~~~i~p~~~~p~ll~~-Ll~~l~--~~~~~~vr~~al~~lg~l 801 (1874)
.++|..+....--.++++. |..++. ...+..||..++.++..-
T Consensus 83 kNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 83 KNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 9999764321112467777 677773 233568999888887553
No 352
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=25.53 E-value=4.6e+02 Score=26.82 Aligned_cols=87 Identities=11% Similarity=0.041 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHH-HHHHHHHHHhhcC--------CCCcchHHHHHHHHHhh
Q 000196 281 EVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYL-KICMNHILTVLRI--------PAERDSGFIALGEMAGA 351 (1874)
Q Consensus 281 ~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl-~~~~~~Ll~~L~~--------~~~R~~a~~alg~la~~ 351 (1874)
+.+..+...+.++++.|+..++.++..+...++..|-..+- .+++..|...+.. ...|..++..|..-+.+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45556667778999999999999999999998887754222 4556666666642 12367788888888877
Q ss_pred chhhhhhhhHHHHHHHHH
Q 000196 352 LDGELFHYLPTITSHLRE 369 (1874)
Q Consensus 352 v~~~~~p~l~~i~~~l~~ 369 (1874)
.+. .|++..+...++.
T Consensus 130 f~~--~~~i~~~y~~Lk~ 145 (171)
T 1juq_A 130 LPE--EAKIKDAYHMLKR 145 (171)
T ss_dssp CTT--CHHHHHHHHHHHH
T ss_pred cCC--CcHHHHHHHHHHH
Confidence 765 2455555555543
No 353
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=25.28 E-value=3.6e+02 Score=27.10 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCC
Q 000196 1612 PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAME-LSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLD 1690 (1874)
Q Consensus 1612 ~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~ 1690 (1874)
+|..=..|++.+=+.|+.. ....+..+.+.-.+ +...+ +.....-+-.+.....++.|. ++
T Consensus 12 ~yd~W~~yl~llE~~g~p~-~d~~l~rlrd~YerAia~~P-----------p~k~~~wrrYI~LWIrYA~~~-ei----- 73 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPL-SDALLNKLIGRYSQAIEALP-----------PDKYGQNESFARIQVRFAELK-AI----- 73 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSC-CHHHHHHHHHHHHHHHHHSC-----------GGGGTTCHHHHHHHHHHHHHH-HH-----
T ss_pred CHHHHHHHHHHHHHcCCCc-hhhHHHHHHHHHHHHHHcCC-----------ccccccHHHHHHHHHHHHHHH-Hh-----
Confidence 4666777888887777641 12233333322211 11000 011223456788899999995 33
Q ss_pred CCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhc
Q 000196 1691 DESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACA 1756 (1874)
Q Consensus 1691 ~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~ 1756 (1874)
.++++..+.|+.|.+++++..|.|..+|.| |+- ...+..|-+=..+||.++
T Consensus 74 -~D~d~aR~vy~~a~~~hKkFAKiwi~~AqF--EiR------------qgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 -QEPDDARDYFQMARANCKKFAFVHISFAQF--ELS------------QGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp -HCGGGCHHHHHHHHHHCTTBHHHHHHHHHH--HHH------------TTCHHHHHHHHHHHHHTT
T ss_pred -cCHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHH------------cccHHHHHHHHHHHhccC
Confidence 356788899999998899999999999986 221 124556666677777664
No 354
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=25.24 E-value=4.3e+02 Score=26.77 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH--hHHHHHHHHHhcCcchhhHHHHHHHHHHHHh
Q 000196 682 APIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGAAVTKREVAVSTLGQVVQ 759 (1874)
Q Consensus 682 ~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~llp~l~~~l~d~~~~~~r~~A~~~Lg~l~~ 759 (1874)
...+..+.+++... ++.+...++..+..+...+|..|...+. .++..++..+....+..+|+.++..+..-..
T Consensus 51 keA~ral~krl~~~-----n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 51 KDCLKAIMKRVNHK-----VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 45566777788764 7888888899999999999976654332 3555555555543456788777776666555
Q ss_pred hcc
Q 000196 760 STG 762 (1874)
Q Consensus 760 ~~~ 762 (1874)
..+
T Consensus 126 ~f~ 128 (163)
T 1x5b_A 126 EFQ 128 (163)
T ss_dssp HTT
T ss_pred Hhc
Confidence 443
No 355
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=25.22 E-value=1.1e+02 Score=33.39 Aligned_cols=127 Identities=6% Similarity=-0.044 Sum_probs=74.2
Q ss_pred HHhhhcCCChhhhhhHHHHHhHhhccccCcchhHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhhhCCCcchHHHHHH
Q 000196 74 ISGLLESNDAAENLGALRAIDELIDVALGENASKVSKFSNYMRTVFEVKRDREILVLASKVLGHLARAGGAMTADEVEFQ 153 (1874)
Q Consensus 74 i~~l~~s~~~~~r~~~i~ai~~li~~~~~~~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~lg~l~~~~g~~~~~~v~~~ 153 (1874)
..+|..++.-..|..|++.+..- ......+ ...++..+.-++.+.. .+.+.... + ..
T Consensus 53 a~~Lw~~~~~E~r~lA~li~~~~-----~~~~~~~-------~~~v~~~~nWd~~D~~---~~~l~~~~----~----~~ 109 (235)
T 1t06_A 53 AEELYATGNYDAMYFAGIIADPK-----AMSESDF-------DRWIDGAYFYMLSDYV---VAVTLSES----N----IA 109 (235)
T ss_dssp HHHHHHTCCHHHHHHHHHHCCGG-----GCCHHHH-------HHHHHTCCSHHHHHHT---HHHHHTTS----S----SH
T ss_pred HHHHHcCCcHHHHHHHHHhhCHH-----hcCHHHH-------HHHHhCCCcHHHHHHH---HHHHHhcC----c----hH
Confidence 45677777777776665333211 0111122 2334433445666643 23332221 1 12
Q ss_pred HHHHHhhhcCCCcchhHHHHHHHHHHHHhhcCcc-chhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 000196 154 VKMALDWLRGDRVEYRRFAAVLILKEMAENASTV-FNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLR 223 (1874)
Q Consensus 154 ~~~~~~~l~~~~~~~~r~aA~~~l~~la~~~p~~-~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~ 223 (1874)
.+.+.+|+.++..+.+|.|-+.-...++...... =..++..+++.+-..+.|++..||.|...+|+.+..
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk 180 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAI 180 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Confidence 4557789988888887777552111223222221 235788899988889999999999999999988764
No 356
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=25.00 E-value=8.8e+02 Score=28.36 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHhhcCc--cchhchHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHhhcch-h-hHHHHHHHH---
Q 000196 168 YRRFAAVLILKEMAENAST--VFNVHVAEFVDAIWVALRDPTLAVRERAVEALRACLRVIEKRET-R-WRVQWYYRM--- 240 (1874)
Q Consensus 168 ~~r~aA~~~l~~la~~~p~--~~~~~l~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i~~r~~-~-~~~~~~~~i--- 240 (1874)
...+..+.+|+++..+... .+.. -+..+..|..+|..+++.+|..|.+-|..+..+ ...+. . ..-+.+..+
T Consensus 135 ~~q~~~l~CLkalmN~~~G~~~vl~-~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~-~~~~gG~~~VL~Al~~~~~~ 212 (383)
T 3eg5_B 135 RNQHEIIRCLKAFMNNKFGIKTMLE-TEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL-PQPEDMNERVLEAMTERAEM 212 (383)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHT-CSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTC-CSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHc-ChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhC-cCcCCcHHHHHHHHHHHHHh
Confidence 4457788888888655321 1111 223567778888889999999999888765432 21011 0 001111111
Q ss_pred -----HHHHHhhccCCCChhHHHHHHHHHHHHHHcch
Q 000196 241 -----FEATQDGLGRNAPVHSIHGSLLAVGELLRNTG 272 (1874)
Q Consensus 241 -----~~~~~~~l~~~~~~~~~~~al~~l~~ll~~~~ 272 (1874)
|..++.++.+..+.+...+++..++.++.+..
T Consensus 213 ~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 213 DEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp HTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCC
Confidence 34455677765568888999999999998654
No 357
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=24.72 E-value=1.6e+02 Score=28.79 Aligned_cols=68 Identities=7% Similarity=0.105 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhcCCChhhhhhHHHHHhHhhccccCc-chhHHHHHHHHHHhhcccCCChHHHHHHHHHH
Q 000196 68 DQLYDRISGLLESNDAAENLGALRAIDELIDVALGE-NASKVSKFSNYMRTVFEVKRDREILVLASKVL 135 (1874)
Q Consensus 68 ~~l~~~i~~l~~s~~~~~r~~~i~ai~~li~~~~~~-~~~~~~~~~~~L~~~l~~~~d~~v~~~aa~~l 135 (1874)
.+|++.+.+-++...++.|++.++.++.++.-.... .......|.+.|..++....|++.++...+++
T Consensus 39 ~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~~~~~~~kl~~ll 107 (132)
T 4flb_A 39 STIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIF 107 (132)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTCSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 456666666666677889999999999998653222 22344556666666665433455544433333
No 358
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=24.55 E-value=1.2e+03 Score=29.72 Aligned_cols=258 Identities=10% Similarity=0.019 Sum_probs=141.4
Q ss_pred HHHHHHHhhhccCCH------HHHHHH-HHHH-HhhcCCcccHHHHHHHHHHHHhcCChhHHH-HHHHHHhcCCCCCCcc
Q 000196 1535 RNMWTERIQGTKRNV------EVWQAL-LAVR-ALVLPPTEDVETWLKFASLCRKSGRISQAR-STLVKLLQYDPETSHE 1605 (1874)
Q Consensus 1535 ~~~W~~Rl~~~~~~~------~~w~~i-L~~R-~~vl~~~e~~~~wlk~a~laRk~g~~~~a~-~~L~~l~~~~~~~~~~ 1605 (1874)
...|.+-+.....+. ..-.++ ...+ .+..-| ...+.|+.+++....+|..+.|. ..+.++.+..|.
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~---- 376 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN---- 376 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC----
Confidence 478888776543332 112222 1222 222234 35899999999999999998886 888888776552
Q ss_pred cccCCCChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCc-cccccccccccccCcchhhHHHHHHHHhhhHhh
Q 000196 1606 NVRYHGPPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPV-IQSAASTSLTTATSTNVPLIARVYLKLGSWKRA 1684 (1874)
Q Consensus 1606 ~~~~~~~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~ 1684 (1874)
.+.+-+.++++.+..|+ ...|-+.+++.+..+..... .....+.. ......-..-.+.++..+++...+
T Consensus 377 ------s~~Lwl~~a~~ee~~~~---~e~aR~iyek~l~~l~~~~~~~~~~~p~~-~~~~~~~~~~~~~vWi~y~~~erR 446 (679)
T 4e6h_A 377 ------SAVLAFSLSEQYELNTK---IPEIETTILSCIDRIHLDLAALMEDDPTN-ESAINQLKSKLTYVYCVYMNTMKR 446 (679)
T ss_dssp ------CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHhhhhhhccCcc-hhhhhhhccchHHHHHHHHHHHHH
Confidence 35677899999999996 46777777777654310000 00000000 000000011234566666666554
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhh-cccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHhhccccCCCc
Q 000196 1685 LPPGLDDESIPEIIAAYRNATQC-ATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYFHSIACAAHAKGVD 1763 (1874)
Q Consensus 1685 ~~~~~~~~~~~~i~~~y~~a~~~-~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~~si~~~~~~~~~~ 1763 (1874)
. ...+.....|..|.+. .+...+.|..||..-++. .++. ..|-+-|-+++... .
T Consensus 447 ~------~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~------~~d~-------e~Ar~ife~~Lk~~------p 501 (679)
T 4e6h_A 447 I------QGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI------SKDT-------KTACKVLELGLKYF------A 501 (679)
T ss_dssp H------HCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT------TSCC-------HHHHHHHHHHHHHH------T
T ss_pred c------CCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh------CCCH-------HHHHHHHHHHHHHC------C
Confidence 3 2467888899999987 445567888777643221 0101 12233333333321 1
Q ss_pred chHHhHHHHHHHHHhcCCcHHHHHHHHhcccCCCh-----hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHhhCchhh
Q 000196 1764 DSLQDILRLLTLWFNHGATEEVQIALQKGFAHVNI-----NTWLVVLPQIIARIHSNNRAVRELIQSLLVRIGQSHPQAL 1838 (1874)
Q Consensus 1764 ~~~q~~~RlLtLwf~~g~~~~v~~~~~~~~~~ip~-----~~wl~~ipQLiari~~~~~~v~~~l~~ll~~i~~~hPqa~ 1838 (1874)
+.-.-....+.+....|+.+.+...++.++...|. ..|..+ -+.=.+.+.. .-+..+..++.+.+|..-
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~-~~fE~~~G~~-----~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV-IFFESKVGSL-----NSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH-HHHHHHTCCS-----HHHHHHHHHHHHHSTTCC
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHHHHHcCCH-----HHHHHHHHHHHHhCCCCc
Confidence 11222334444444557777777788888887772 233333 2222333332 236666777778888743
No 359
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=24.15 E-value=7e+02 Score=28.54 Aligned_cols=67 Identities=18% Similarity=0.085 Sum_probs=48.7
Q ss_pred HHHHHhcCCChhHHHHHHHhccCCCCc----chhhccHhhHHHHHHHhCCCCHHHHHHHHHHHHhhhcCCcC
Q 000196 565 LLIAAVADADVTVRHSIFSSLYGNRGF----DDFLAQADCLSAIFAALNDEDFDVREYAISVAGRLSEKNPA 632 (1874)
Q Consensus 565 Ll~~~~~d~~~~vR~~~l~~l~~~~~f----~~~L~~~~~l~~L~~~l~D~~~~VR~~a~~~l~~l~~~~p~ 632 (1874)
|+.+ +.+.+.++..-+|.+|..--.+ +....+++.++.++..++.....|.+.|+++|..++.+.+.
T Consensus 165 Li~v-i~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~ 235 (339)
T 3dad_A 165 LIRV-GAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN 235 (339)
T ss_dssp HHHH-HTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHH-HHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc
Confidence 4443 4667888888888888521111 12234678899999888888889999999999999988754
No 360
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=24.09 E-value=3.5e+02 Score=26.69 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=42.3
Q ss_pred cchhHHHHHHHHHHHHhhcCccchhch--HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 000196 166 VEYRRFAAVLILKEMAENASTVFNVHV--AEFVDAIWVALRDPTLAVRERAVEALRACLRVI 225 (1874)
Q Consensus 166 ~~~~r~aA~~~l~~la~~~p~~~~~~l--~~il~~i~~~l~D~~~~VR~aA~~al~~~~~~i 225 (1874)
+.+...-|+.+|..+..||+..|...+ ..+++.+...+..+++.||+...+.+..-....
T Consensus 55 n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 55 DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 344556688899999999999887544 445655555555678899988887776544433
No 361
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.83 E-value=1.5e+02 Score=29.31 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=45.5
Q ss_pred HHHHHHHcchhhhHHHHHHHHHHHHHHhhcchhHHHHHHHHHhHhHhhhChhhHHHHHHHHHHH
Q 000196 263 AVGELLRNTGEFMMSRYREVAEIVLRYLEHRDRLVRLSITSLLPRIAHFLRDRFVTNYLKICMN 326 (1874)
Q Consensus 263 ~l~~ll~~~~~~~~~~~~~i~~~ll~~~~~~~~~vr~~~~~~i~~la~~~~~~f~~~yl~~~~~ 326 (1874)
.+.++...+-..-...+.++++.++..++++++.+..-++.+|..|+....+.|+. .+..-+.
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~-~~r~~~~ 93 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRR-EMQRNSV 93 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHH-HHHHTTH
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHH-HHHHhHH
Confidence 55566553221111335789999999999999999999999999999988888876 3444333
No 362
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=23.44 E-value=4.2e+02 Score=24.02 Aligned_cols=87 Identities=6% Similarity=0.081 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCC
Q 000196 1613 PQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDE 1692 (1874)
Q Consensus 1613 ~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~ 1692 (1874)
+.-.++-+++...+|+ -..|+.-++..+.......... +. ...--..++.|+.++|+
T Consensus 5 a~dc~~lG~~~~~~~~---y~~A~~W~~~Al~~~~~~~~~~------~~--~~~i~~~L~~~~~~~g~------------ 61 (104)
T 2v5f_A 5 AEDCFELGKVAYTEAD---YYHTELWMEQALRQLDEGEIST------ID--KVSVLDYLSYAVYQQGD------------ 61 (104)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCCCS------SC--HHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHHHccc---hHHHHHHHHHHHHhhhccCCCc------cc--HHHHHHHHHHHHHHccC------------
Confidence 4556788889998885 6889999988776543221000 00 00011234555555554
Q ss_pred CHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q 000196 1693 SIPEIIAAYRNATQCATKWGKAWHSWALFNT 1723 (1874)
Q Consensus 1693 ~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~ 1723 (1874)
.+..+..|++|.+++|+...+.+.++.+..
T Consensus 62 -~~~A~~~~~~al~l~P~~~~~~~n~~~~~~ 91 (104)
T 2v5f_A 62 -LDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (104)
T ss_dssp -HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCCCHHHHhhHHHHHH
Confidence 467889999999999999988888874433
No 363
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=22.89 E-value=4.5e+02 Score=25.43 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=33.6
Q ss_pred cchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhc---ccchhhcHHhHHHHHHH
Q 000196 679 PYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVG---GFGMRQYISELMPLIVE 736 (1874)
Q Consensus 679 py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~---g~~~~~~~~~llp~l~~ 736 (1874)
.+...|+..+...+... .+.-+...++.+..+.... |..+...+...+|.++.
T Consensus 35 ~~a~~iv~~i~~~l~~~-----~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~ 90 (135)
T 4fu3_A 35 KHAGPIVSVWHRELRKA-----KSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFS 90 (135)
T ss_dssp GGHHHHHHHHHHHHHHS-----CTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-----ccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 35677888888888764 3445678889999887654 44444444444444443
No 364
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.72 E-value=4.5e+02 Score=32.16 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHH
Q 000196 1671 IARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCATKWGKAWHSWALFNTAVMSHYTLRGLPSVAPQFVVHAVTGYF 1750 (1874)
Q Consensus 1671 ~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~~~~~~~~~~~~~~~~~~~~ai~~f~ 1750 (1874)
.-+|+.-+|+=..- ....+....+|.+|..+.|+.+.+|+++|...-. + .....|+-.|.
T Consensus 151 ~hr~l~~LGDL~RY------~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-------~-------~~~l~a~y~y~ 210 (497)
T 1ya0_A 151 CQHCLVHLGDIARY------RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-------K-------GDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-------T-------TCHHHHHHHHH
T ss_pred HHHHHHHcccHHHH------HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-------c-------cccHHHHHHHH
Confidence 44677777775322 1346788999999999999999999999966432 0 12346888889
Q ss_pred HHHhh
Q 000196 1751 HSIAC 1755 (1874)
Q Consensus 1751 ~si~~ 1755 (1874)
||+..
T Consensus 211 rsl~~ 215 (497)
T 1ya0_A 211 RSIAV 215 (497)
T ss_dssp HHHSS
T ss_pred HHHhc
Confidence 98875
No 365
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.38 E-value=7.2e+02 Score=26.43 Aligned_cols=89 Identities=10% Similarity=0.006 Sum_probs=57.3
Q ss_pred HHHHHHHhCccccccchHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHhcccchhhcHH--hHHHHHHHHHhcCc
Q 000196 665 LLGCLIRNCERLIRPYIAPIHKALVARLLEGTGINANNGIISGVLVTVGDLARVGGFGMRQYIS--ELMPLIVEALLDGA 742 (1874)
Q Consensus 665 ~L~~l~~~~~~~~~py~~~il~~ll~~l~~~~~~~~~~~v~~~~~~~l~~La~~~g~~~~~~~~--~llp~l~~~l~d~~ 742 (1874)
-|.+++...+. -....+..+.+++... ++.+...++..+..+...+|..|...+. .++..+...+.+..
T Consensus 28 eicd~i~~~~~----~~k~a~r~l~krl~~~-----n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~ 98 (220)
T 1dvp_A 28 LICDEINQKDV----TPKNAFAAIKKKMNSP-----NPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTP 98 (220)
T ss_dssp HHHHHHHTTSS----CHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCS
T ss_pred HHHHhhcCCCc----CHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCC
Confidence 35555554332 2346677788888764 8888888898999999998876543322 24555555555555
Q ss_pred chhhHHHHHHHHHHHHhhcc
Q 000196 743 AVTKREVAVSTLGQVVQSTG 762 (1874)
Q Consensus 743 ~~~~r~~A~~~Lg~l~~~~~ 762 (1874)
+..+|+.++..+..-....+
T Consensus 99 ~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 99 HENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 66788777766666655544
No 366
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=22.31 E-value=4.2e+02 Score=26.27 Aligned_cols=83 Identities=11% Similarity=0.230 Sum_probs=48.3
Q ss_pred HHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHhhhhhh----ccchhhHHHHHHhccc---
Q 000196 926 LVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLALNDEFR----THLPVILPCCIQVLSD--- 998 (1874)
Q Consensus 926 lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l~~~f~----~yl~~llp~ll~~l~~--- 998 (1874)
|..++..++ .+...|+..+.+...... +.....++-++.+++...+.... +|.+.+.+.+.+.+.+
T Consensus 29 LT~~a~~~~-~~~~~IV~~~~~~i~k~~------~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~~~F~~~L~~~f~~~~~ 101 (145)
T 3d9j_A 29 ITKAAIKAI-KFYKHVVQSVEKFIQKCK------PEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYR 101 (145)
T ss_dssp HHHHHHHTG-GGHHHHHHHHHHHHHHSC------GGGHHHHHHHHHHHHHHHHHHHCTTTCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhCC------ccceeehhhhhHHHHHHhhhhcCCccccHHHHHHHHHHHHHHHHHh
Confidence 333344444 467888888877766543 23456899999999998887433 4555555555554432
Q ss_pred ccccCchhhHHHHHHHHH
Q 000196 999 AERCNDYTYVLDILHTLE 1016 (1874)
Q Consensus 999 ~~~~~~~~~~~~il~~l~ 1016 (1874)
.+ ...+....+++..-.
T Consensus 102 ~~-~~~r~kl~rLl~iW~ 118 (145)
T 3d9j_A 102 CP-GDDKSKIVRVLNLWQ 118 (145)
T ss_dssp SC-GGGHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHhc
Confidence 11 223444455555554
No 367
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=22.12 E-value=6e+02 Score=25.39 Aligned_cols=88 Identities=11% Similarity=0.001 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCC
Q 000196 1612 PPQVMYAYLKYQWSLGEDLKRKEAFARLQTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDD 1691 (1874)
Q Consensus 1612 ~~~v~~e~~k~lw~~g~~~~~~~Al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~ 1691 (1874)
.+...+.|+-.|-...+.....+++..|+++++.- .+....+|++.+|--...+
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--------------------~p~~~rd~lY~LAv~~~kl------ 84 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--------------------SKEEQRDYVFYLAVGNYRL------ 84 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--------------------CHHHHHHHHHHHHHHHHHT------
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--------------------CccchHHHHHHHHHHHHHc------
Confidence 46777888777766554334568999999987641 0112345555555544443
Q ss_pred CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000196 1692 ESIPEIIAAYRNATQCATKWGKAWHSWALFNTAV 1725 (1874)
Q Consensus 1692 ~~~~~i~~~y~~a~~~~~~~~k~w~~wA~~n~~~ 1725 (1874)
+..+...+++..+.+.+|+|..+..--..+-+.+
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4578899999999999999988877555554443
No 368
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=21.11 E-value=1.1e+03 Score=28.13 Aligned_cols=115 Identities=10% Similarity=0.010 Sum_probs=76.1
Q ss_pred ccHHHHHHHHHHHHhcC---ChhHHHHHHHHHhcCCCCCCcccccCCCChHHHHHHHHHHHh----cCCcchHHHHHHHH
Q 000196 1567 EDVETWLKFASLCRKSG---RISQARSTLVKLLQYDPETSHENVRYHGPPQVMYAYLKYQWS----LGEDLKRKEAFARL 1639 (1874)
Q Consensus 1567 e~~~~wlk~a~laRk~g---~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~v~~e~~k~lw~----~g~~~~~~~Al~~l 1639 (1874)
.+...|..++.+..+.| +++.|...+.++... +.+...+..+.+... .+ +..+|+..+
T Consensus 326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~g~~~---~~~~A~~~~ 390 (490)
T 2xm6_A 326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK------------GEKAAQFNLGNALLQGKGVKK---DEQQAAIWM 390 (490)
T ss_dssp TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTSSSCC---CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHcCCCCCC---CHHHHHHHH
Confidence 34667788888877766 677888887777653 236666767766665 34 468899998
Q ss_pred HHHHHHhcCCCccccccccccccccCcchhhHHHHHHHHhhhHhhcCCCCCCCCHHHHHHHHHHHHhhc---ccchHHHH
Q 000196 1640 QTLAMELSSCPVIQSAASTSLTTATSTNVPLIARVYLKLGSWKRALPPGLDDESIPEIIAAYRNATQCA---TKWGKAWH 1716 (1874)
Q Consensus 1640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~~~~g~w~~~~~~~~~~~~~~~i~~~y~~a~~~~---~~~~k~w~ 1716 (1874)
+..+..- .+.++..+|.....-. + ...+.++....|++|.+.. |....++.
T Consensus 391 ~~A~~~~------------------------~~~a~~~Lg~~y~~g~-g-~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 391 RKAAEQG------------------------LSAAQVQLGEIYYYGL-G-VERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp HHHHHTT------------------------CHHHHHHHHHHHHHTS-S-SCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHhCC------------------------CHHHHHHHHHHHHcCC-C-CCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 8765310 1334555666554311 1 1357899999999999998 44777777
Q ss_pred HHHHHH
Q 000196 1717 SWALFN 1722 (1874)
Q Consensus 1717 ~wA~~n 1722 (1874)
..+...
T Consensus 445 ~l~~~~ 450 (490)
T 2xm6_A 445 TEKKLT 450 (490)
T ss_dssp HHTTSC
T ss_pred HHHhcC
Confidence 666543
No 369
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=20.13 E-value=4e+02 Score=25.81 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=53.9
Q ss_pred cchhHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHhhcCCCCCcccccccchhHHHHHHHHHHHh
Q 000196 898 PKVLPDLFHTVRTCDDYLKDYITWKLGTLVSIVRQHIRKYLQELFSLISELWSSFSLPATNRTYRGLPVLHLVQQLCLAL 977 (1874)
Q Consensus 898 ~~ilp~ll~~l~~~~~~~~~~~~~~l~~lv~~~~~~i~~y~~~i~~~i~~~~~~~~~~~~~~~~~~~~~l~~i~~l~~~l 977 (1874)
+..+...|..+.++.++ +.++..++-.|. .+.++|+.++.+.+..... .....++-++.++....
T Consensus 6 ~~~l~~~L~~L~~s~~s--------I~~~s~w~l~~~-~~a~~iv~~i~~~l~~~~~------~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 6 ESALEKKLSELSNSQQS--------VQTLSLWLIHHR-KHAGPIVSVWHRELRKAKS------NRKLTFLYLANDVIQNS 70 (135)
T ss_dssp HHHHHHHHHHCCSSTTH--------HHHHHHHHHHTG-GGHHHHHHHHHHHHHHSCT------TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc------chhHHHHHHHHHHHHHH
Confidence 33444445555443333 233444444553 5788899988888775442 23457888888886543
Q ss_pred ---hhhhhccchhhHHHHHHhcccccccCchhhHHHHHHHHH
Q 000196 978 ---NDEFRTHLPVILPCCIQVLSDAERCNDYTYVLDILHTLE 1016 (1874)
Q Consensus 978 ---~~~f~~yl~~llp~ll~~l~~~~~~~~~~~~~~il~~l~ 1016 (1874)
+.+|...+...+|.++...........+....+++....
T Consensus 71 ~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~kl~kll~iW~ 112 (135)
T 4fu3_A 71 KRKGPEFTREFESVLVDAFSHVAREADEGCKKPLERLLNIWQ 112 (135)
T ss_dssp TTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 334444444444444433321111122444555655554
Done!